Citrus Sinensis ID: 005235

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------
Protein Sequence
MRERKKSSAVEVSSVKKKKEKKTKDNNEPREQKEKEESQSIMKQQKNTTSRSKKEKQRKTTEDYESLRESELSGDEVHGTDHDVDNADDHHEEDQTDGSEGHRGVEESDSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH
Secondary Structure (PSIPRED)
cccccccccHHccHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHccccccccEEEEEccccEEEEccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEccccEEEEEEEEcccEEEEEEcccccccEEEEEEcccEEEEEcccccccEEEEEccccccccccccccccEEEEEEccccccccEEccccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEcccccccccEEEEEcccccEEEEEccccEEEEEccccEEEcEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEEccccEEccccccHHHHHHHHHcccccccEEEEcccccccEEccHHHHHHHHHHHHcccccccccccccHHHHccccccEccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccEEccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHccHHHHHcccccHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHccccccccHccccccEEEEEEEcccccEEEEEEEEcccEEEEEEccccEEEEEEccccccEEEEEEEccEEEEEccccccHHHHHHHHHHHccccccccccccccccEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEEcccccccccccccccEEEEEEcccccEEEEEEccEEEEHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEccccEEEEEEccccccccHHHHHcHHHHHHHHHcccccEEEEcccccEEEEEEcEEHHHHcccccEEEHHEEcccEEEcccEEEEEEEcccccEEEEEccccEEEEEEc
Coil and Loop (DISEMBL)
mrerkkssaVEVSSVkkkkekktkdnnepreqkeKEESQSIMKQQknttsrskkekqrKTTEDYESLReselsgdevhgtdhdvdnaddhheedqtdgseghrgveesdssedevaprntigdvplewykdekhigydisgkkitKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLkgkaphtdfdqyadyvdwfkyddalhplsnapepkrrfipskwesKKVVQYVRAIRKGlikfdepkeeepkfyllwgddssAAEKAKHlayipapkpklpgheesynpsleyiptqeelNSYQLmyeedrpkfiprrftslrsvpayenAVKDSFERCMdlylcprvrkkrvnidpetlkpklpsrkdlkpypvacyleykgstdgtvrIWEVESGRCLRVLEIGEAIQyvawnplpelpvlavsvGQDVLILntglgneeEQRRVKDLLHvetptapddnmASIVSWLQHdkldgirlRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKklshripfklhglpvssvfhptrsiffvstkknirVYDLLKQRLIKKLETGLKEvssiaihpagdnlivgsregklcwfdmdlsskpyrvlkchpkditnvafhrsyplfascsddctAYVFHGMVysdlnqnplivpleilrghtssngrgvmdckfhprqpwlftagadsVIRLYCH
Flexible Loop (DISEMBL)
mrerkkssavevssvkkkkekktkdnnepreqkekeesqsimkqqknttsrskkekqrkttedyeslreselsgdevhgtDHDVDNADDHHeedqtdgseghrgveesdssedevaprntigdvplewykdekhigydisgkkitkkerqDKLASflanvddskswrKIYDEYNDEEVELTKEEIRLVQRLlkgkaphtdfDQYADYVDWFKYDDALhplsnapepkrrfipskweskkvvQYVRAIRkglikfdepkeeePKFYLLWGDDSSAAEKAKHLAyipapkpklpGHEESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYlcprvrkkrvnidpetlkpklpsrkdlkpypVACYLEykgstdgtvrIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNtglgneeeqrRVKDLLHVETptapddnmaSIVSWLQHDKLDGIRLRHFKMvssvewhrrgDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIffvstkknirvyDLLKQRLIKKLETGLKEvssiaihpagdnliVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRqpwlftagadsvIRLYCH
Low Complexity Region (SEG)
MRerkkssavevssvkkkkekktkDNNEPREQKEKEESQSIMKQQKNTTSRSKKEKQRKTTEDYESLRESELSGDEVHGTDHDVDNADDHHEEDQTDGSEGHRGVeesdssedeVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDepkeeepkFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH
Disordered region (IsUnstruct)
************************************************************************************************************************IGDVPLEWYKDEKHIGYDISGKKIT*******LASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPL********RFIPSKWESKKVVQYVRAIRKGLIKFDE*****PKFYLLWGD******************************************SYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNI**************LKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN********DLLHV********NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC*
Disordered Region (DISOPRED)
*********************************************************************************************************************RNTIGDVPLEWYKDEKHIGYDISGKKITK*****KLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHP**********FIPSKWESKKVVQYVRAIR***************FYLLWGDDS****************PKLPGHEESYNPSLEYIPTQEEL*************FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT*P*DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL******K*HGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH
Disordered Region (DISEMBL)
****************************************************************************VHGTDHDVDNAD*****************************RNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH
Disordered Region (DISPRO)
*****************************************************************************************************************EVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSS*AEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET********ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRERKKSSAVEVSSVKKKKEKKTKDNNEPREQKEKEESQSIMKQQKNTTSRSKKEKQRKTTEDYESLRESELSGDEVHGTDHDVDNADDHHEEDQTDGSEGHRGVEESDSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	707	2.2.26 [Sep-21-2011]
A8ID74	797	Ribosome biogenesis prote	N/A	no	0.848	0.752	0.479	1e-166
Q7ZXX9	728	Ribosome biogenesis prote	N/A	no	0.957	0.929	0.411	1e-156
Q7T0W1	728	Ribosome biogenesis prote	N/A	no	0.841	0.817	0.451	1e-155
A9UZS7	799	Ribosome biogenesis prote	N/A	no	0.842	0.745	0.426	1e-155
A4IHS2	729	Ribosome biogenesis prote	yes	no	0.841	0.816	0.449	1e-155
Q562C2	731	Ribosome biogenesis prote	yes	no	0.828	0.801	0.453	1e-154
A0JMQ0	777	Ribosome biogenesis prote	yes	no	0.847	0.770	0.444	1e-154
P97452	732	Ribosome biogenesis prote	yes	no	0.828	0.800	0.445	1e-154
Q14137	746	Ribosome biogenesis prote	yes	no	0.855	0.810	0.433	1e-152
B4HN85	784	Ribosome biogenesis prote	N/A	no	0.845	0.762	0.425	1e-149

>sp|A8ID74|BOP1_CHLRE Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_111274 PE=3 SV=2

 Score =  587 bits (1513), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 304/634 (47%), Positives = 404/634 (63%), Gaps = 34/634 (5%)

Query: 108 SDSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWR 167
           SDSSEDE   RNT+G+VPL WYKDE+HIGYDI G +ITK +R+D+L   L   D  K+ R
Sbjct: 164 SDSSEDERPNRNTVGNVPLVWYKDEEHIGYDIEGARITKAQRKDRLQQLLDRNDSKKALR 223

Query: 168 KIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFK--YDDALHPLSNAPE 225
            IYD YNDEEV L+KEE+ +V R+  G+ PH + + +     WF    D  + P+ + PE
Sbjct: 224 TIYDPYNDEEVTLSKEELAMVMRIRAGQFPHLEVNPHETEHTWFTDPRDAEVMPIVDRPE 283

Query: 226 PKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEE-----PKFYLLWGDDS----SAAE 276
           PK RF+PSKWE +K+V+ VRAIRKG IK    +EEE     P  YLLW DD     +AA+
Sbjct: 284 PKSRFVPSKWEEQKIVKLVRAIRKGWIKKTPEQEEEERAAGPPAYLLWADDGLTDEAAAK 343

Query: 277 KAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSV 336
               L YIPAPK +LPGH +SYNP  EY+PT+EE+ ++Q+   EDRPK +P+ FTSLR+V
Sbjct: 344 AGSGLTYIPAPKLQLPGHADSYNPPAEYLPTEEEVAAWQMADPEDRPKALPQAFTSLRAV 403

Query: 337 PAYENAVKDSFERCMDLYLCPRVRKKRVNI-DPETLKPKLPSRKDLKPYPVACYLEYKG- 394
           PAY + +K+ FERC+DLYLCPRVR+KR++I  PE L P+LP  +DL+P+P    L Y+G 
Sbjct: 404 PAYTDFIKERFERCLDLYLCPRVRRKRLDIKSPEQLVPQLPKPRDLQPFPTTLALAYEGH 463

Query: 395 --------------------STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVL 434
                                 DGT+R+WEV +GRC R   +   +  VAW P   L ++
Sbjct: 464 MGPVASIAPDPWTGQWLLSGGQDGTLRLWEVRTGRCWRTWVLEGPVSAVAWCPQAGLRLV 523

Query: 435 AVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF 494
           + +VG  V++L +G G EE +    + L V  P                    G+ +R  
Sbjct: 524 SAAVGNCVVLLPSGTGPEEAEEAAAEALRVRGPGRGGGRWVRGGPEEASSSGAGLAVRLR 583

Query: 495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIF 554
             V S+ WH RGDY ++V P G ++A+ +HQLSK+ S     K  G  V   FHPT+  F
Sbjct: 584 FPVRSLAWHGRGDYFASVAPTGNTQAVVVHQLSKRASQNPFRKNRGRVVRVAFHPTKPFF 643

Query: 555 FVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK 614
           FV+T+ ++RVY+L KQ L KKL  G   +S +A+HP GD+++VGS + ++ W+D+DLS+K
Sbjct: 644 FVATQNHVRVYNLAKQALAKKLLGGGGVLSCLALHPGGDHVLVGSDDKRVAWYDLDLSTK 703

Query: 615 PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GH 673
           PY+ L+ H      VAFHRSYPLFAS +DD T  VFHGMVY+DL  NPLIVP++ILR GH
Sbjct: 704 PYKALRYHSAPPRAVAFHRSYPLFASAADDGTVQVFHGMVYADLLTNPLIVPVKILRGGH 763

Query: 674 TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707
           T +   GV DC FHP QPW+FTAGADS I LYC+
Sbjct: 764 TVTASEGVADCAFHPTQPWIFTAGADSKILLYCN 797

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q7ZXX9|BOP1B_XENLA Ribosome biogenesis protein bop1-B OS=Xenopus laevis GN=bop1-b PE=2 SV=1

 Score =  554 bits (1427), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/715 (41%), Positives = 435/715 (60%), Gaps = 38/715 (5%)

Query: 19  KEKKTKDNNEPREQKEKEESQSIMKQQKNTTSRSKKEKQRKTTEDYESLRESELSGDEVH 78
           +E ++  +  P ++ + EESQ    +   T S   +E         E +++   S  E+ 
Sbjct: 23  EENRSLQDGNPLDESDSEESQYSGLEDSGTDSSDDEEDHSS-----EEVQDPGKSPKEII 77

Query: 79  GTDHDVDNADDHHEEDQTDGSEGHRGVEESDSSEDEVAPRNTIGDVPLEWYKDEKHIGYD 138
              H    +      D+ D     +  E   S E+++  RNT+G++P+EWYKD  HIGYD
Sbjct: 78  KVPHRTSKSQADSPADEEDQPNEIKEYENDSSDEEDI--RNTVGNIPMEWYKDLPHIGYD 135

Query: 139 ISGKKITKKER-QDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAP 197
           + G+KI K  R +D+L  FL  +++   WR ++D+   ++++LT E++ LV+RL KG+  
Sbjct: 136 LDGRKIFKPLRSKDQLEEFLDKMENPDYWRTVHDKKTGQDIKLTDEQVDLVERLQKGQFG 195

Query: 198 HTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEP 257
             ++D Y   +D+F ++  +HP++N P  KR FIPS  E +KV + V AI+ G I+  +P
Sbjct: 196 DLNYDPYQPAIDFFTHETMIHPVTNRPADKRSFIPSLIEKEKVSKLVHAIKMGWIQPRKP 255

Query: 258 KEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLM 317
           +++ P +Y LW  +   A   +H  ++PAPK  LPGHE+SYNP  EY+ ++EE  +++  
Sbjct: 256 RDDAPTYYDLWAKEDPNAILGRHKMHVPAPKLPLPGHEQSYNPPPEYLMSEEERLAWEQQ 315

Query: 318 YEEDRP-KFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLP 376
             EDR   F+P+RF  LR+VP Y   + + FERC+DLYLCPR RK RVN+DPE L PKLP
Sbjct: 316 DPEDRKLPFLPQRFNCLRAVPGYARFIHERFERCLDLYLCPRQRKMRVNVDPEDLIPKLP 375

Query: 377 SRKDLKPYPVACYLEYKG--------------------STDGTVRIWEVESGRCLRVLEI 416
             +DL+P+P    + YKG                    S D +VR WEV +GRC++ + +
Sbjct: 376 KPRDLQPFPTIQSMIYKGHKDLVRCISVSPSGQWLVSGSDDCSVRFWEVSTGRCMKSVVL 435

Query: 417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMAS 476
             A++ ++WNP P L ++A  V + V+++N GLG+           H+     P++ +  
Sbjct: 436 EGAVKSISWNPNPVLVLVAACVDRSVVLINPGLGDRLLCSATDQ--HISGYQPPEEEVQQ 493

Query: 477 IVSWLQHDKLD---GIRL--RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS 531
            V+W + +  +   G+RL  +H K V  V +H RGDY + V+P   +  + +HQLS++ S
Sbjct: 494 PVTWEEAEGSEYSSGLRLWIKHQKEVKQVTFHARGDYFAVVLPDNGNSQVLIHQLSRRRS 553

Query: 532 HRIPFKLHGLPVSSV-FHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP 590
              PF+ +   V  V FHPTR  FFV+T++ +RVY+LLKQ L KKL T  K VSSIA+HP
Sbjct: 554 QN-PFRKNKGQVQKVLFHPTRPFFFVATQRYVRVYNLLKQELTKKLLTNCKWVSSIAVHP 612

Query: 591 AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650
           AGDNLI GS + KL WFDMDLS+KPY+VL+ H K +  V+FH+SYPLFAS SDD +  V 
Sbjct: 613 AGDNLICGSYDSKLAWFDMDLSTKPYKVLRHHKKALRAVSFHKSYPLFASGSDDASVIVC 672

Query: 651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
           HGMVY+DL QNPLIVP+++LRGH      GV+D  FHP QPW+F++GAD  IRL+
Sbjct: 673 HGMVYNDLLQNPLIVPVKVLRGHAIHRDLGVLDVMFHPTQPWVFSSGADGTIRLF 727

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Xenopus laevis (taxid: 8355)

>sp|Q7T0W1|BOP1A_XENLA Ribosome biogenesis protein bop1-A OS=Xenopus laevis GN=bop1-a PE=2 SV=1

 Score =  550 bits (1417), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 283/627 (45%), Positives = 406/627 (64%), Gaps = 32/627 (5%)

Query: 107 ESDSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKER-QDKLASFLANVDDSKS 165
           E+DSS++E   RNT+G++P+EWYKD  HIGYD+ G+KI K  R +D+L  FL  +++   
Sbjct: 105 ENDSSDEEDI-RNTVGNIPMEWYKDLPHIGYDLDGRKIFKPLRSKDQLEEFLDKMENPDY 163

Query: 166 WRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPE 225
           WR I+D+   ++++LT E++ LV+RL KG+    ++D Y   +D+F ++  +HP++N P 
Sbjct: 164 WRTIHDKKTGQDIKLTDEQVDLVERLQKGQFGDINYDPYQPAIDFFTHETMIHPVTNRPA 223

Query: 226 PKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIP 285
            KR FIPS  E +KV + V AI+ G I+  +P+E+   +Y LW  +   +   +H  ++P
Sbjct: 224 DKRSFIPSLIEKEKVSKLVHAIKMGWIQPRKPREDTATYYDLWAKEDPNSILGRHKMHVP 283

Query: 286 APKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRP-KFIPRRFTSLRSVPAYENAVK 344
           APK  LPGHE+SYNP  EY+ ++EE  S++    EDR   F+P+RF  LR+VP Y   + 
Sbjct: 284 APKLPLPGHEQSYNPPPEYLMSEEERLSWEQQDPEDRKLPFLPQRFNCLRAVPGYARFIH 343

Query: 345 DSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKG---------- 394
           + FERC+DLYLCPR RK RVN+DPE L PKLP  +DL+P+P    L YKG          
Sbjct: 344 ERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPKPRDLQPFPTIQSLIYKGHKDLVRCISV 403

Query: 395 ----------STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLI 444
                     S D +VR WEV +GRC++ + +  A++ ++WNP P L ++A  V + V++
Sbjct: 404 SPSGQWLVSGSDDCSVRFWEVSTGRCMKSVVLEGAVKSISWNPNPGLVLVAACVDRSVVL 463

Query: 445 LNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL---DGIRL--RHFKMVSS 499
           +N GLG+           H+     P++ +   V+W + +     +G+RL  +H K V  
Sbjct: 464 INPGLGDRLLCSATDQ--HISGYQPPEEEVQQPVTWEEVEGAQYSNGLRLCIKHQKEVKQ 521

Query: 500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV-FHPTRSIFFVST 558
           V +H RGDY + V+P   +  + +HQLS++ S   PF+ +   V  V FHPTR  FFV+T
Sbjct: 522 VTFHARGDYFAVVLPDNGNSQVLIHQLSRRRSQN-PFRKNKGQVQKVLFHPTRPFFFVAT 580

Query: 559 KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV 618
           ++ +RVY+LLKQ L KKL T  K VSSIA+HPAGDNLI GS + KL WFDMDLS+KPY+V
Sbjct: 581 QRYVRVYNLLKQELTKKLLTNCKWVSSIAVHPAGDNLICGSYDSKLAWFDMDLSTKPYKV 640

Query: 619 LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG 678
           L+ H K +  V+FH+SYPLFAS SDD +  V HGMVY+DL QNPLIVP+++LRGH     
Sbjct: 641 LRHHKKALRAVSFHKSYPLFASGSDDGSVIVCHGMVYNDLLQNPLIVPVKVLRGHAIHRD 700

Query: 679 RGVMDCKFHPRQPWLFTAGADSVIRLY 705
            GV+D  FHP QPW+F++GAD+ IRL+
Sbjct: 701 LGVLDVTFHPTQPWVFSSGADATIRLF 727

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Xenopus laevis (taxid: 8355)

>sp|A9UZS7|BOP1_MONBE Ribosome biogenesis protein BOP1 homolog OS=Monosiga brevicollis GN=37129 PE=3 SV=1

 Score =  549 bits (1415), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/638 (42%), Positives = 410/638 (64%), Gaps = 42/638 (6%)

Query: 109 DSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRK 168
           D + DE    N +G +P+EWY+D +HIGYD++GK+I K +++D+L  FL   +   + R 
Sbjct: 162 DDTSDEEHSLNRVGRIPMEWYEDYEHIGYDLNGKRIRKPKQKDRLEKFLDAFEAGNNGRT 221

Query: 169 IYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKR 228
           IYD    +E+ELT ++I +++R+  G+ P T  + Y DYVD+F ++    P+ + PEPKR
Sbjct: 222 IYDPVTGKEIELTDDDINMIKRIQSGQLPDTGINPYEDYVDFFTHEKMQTPVVDKPEPKR 281

Query: 229 RFIPSKWESKKVVQYVRAIRKGLIKF---DEPKE---EEPKFYLLWGDDSSAAE---KAK 279
           RF+PSKWE KK+++ VR+IRKGLIK    D+ K+   EE ++Y +WG++    +   K +
Sbjct: 282 RFVPSKWEHKKIMKIVRSIRKGLIKLPTSDDEKDKSSEEEQYYDVWGNEDDPNDPRIKVR 341

Query: 280 HLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPK-FIPRRFTSLRSVPA 338
              +I APK  LP H ESYNP  EY+PT  E   ++  +E+DR + ++P ++ SLR VPA
Sbjct: 342 QANHIAAPKVALPHHAESYNPPEEYLPTDAEAEKWRNAHEDDRERNYLPHKYGSLRLVPA 401

Query: 339 YENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKG---- 394
           Y+  +++ F RC+DLYLCPR R+ R+N+DPE L PKLP  +DL+P+P A  L Y+G    
Sbjct: 402 YDQYIQERFHRCLDLYLCPRARRIRMNVDPEDLLPKLPKPEDLQPFPSAPSLVYRGHKAR 461

Query: 395 ----------------STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV 438
                           S D T+R+WE+ +GRC+RV+ +   +  VAW P   + ++AV+ 
Sbjct: 462 VTSISCDPTGQWLVSGSDDKTIRVWEISTGRCVRVVTVDAEVNMVAWCPNAGVSIVAVAH 521

Query: 439 GQDVLILNTGLGNEEEQRRVKDLLH--VETPT-APDDNMASIVSW----LQHDKLDGI-- 489
           G  V ++   +      +    L +  +E P+   ++ M +  +W     +    DGI  
Sbjct: 522 GHTVSLICPRVATAAIDKATAVLCNQSIEKPSQGAEEGMRATPTWNRIRGERQDQDGIFF 581

Query: 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV-FH 548
            + H   V  V WH +G+Y ++VMP  E++++ +H L+++ S + PF+     V  V FH
Sbjct: 582 EIPHHAEVMQVTWHHKGNYFASVMPRAETQSVCVHSLNRQ-STQHPFQKRNRDVQRVLFH 640

Query: 549 PTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608
           PT+ +FFV+TK ++RVY+L  Q L+KKL TG++ +SS+AIHPAGDNLI+GS + +LCWFD
Sbjct: 641 PTQPLFFVATKTHVRVYNLQAQALVKKLLTGVRWLSSLAIHPAGDNLIIGSYDKRLCWFD 700

Query: 609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLE 668
           MDLS KPY++L+ H   +  V FH+ YP+FASC DD   +V HGMVY+DL QNPLIVP++
Sbjct: 701 MDLSIKPYKILRYHKYALRQVCFHKKYPIFASCGDDGNVHVLHGMVYNDLGQNPLIVPVK 760

Query: 669 ILRGHT-SSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
           I++ H  +S+G GVMDC FHP QPWLF+AG+D  I+L+
Sbjct: 761 IIKAHNQTSDGMGVMDCTFHPSQPWLFSAGSDGSIKLH 798

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Monosiga brevicollis (taxid: 81824)

>sp|A4IHS2|BOP1_XENTR Ribosome biogenesis protein bop1 OS=Xenopus tropicalis GN=bop1 PE=2 SV=1

 Score =  549 bits (1415), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 282/627 (44%), Positives = 403/627 (64%), Gaps = 32/627 (5%)

Query: 107 ESDSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKER-QDKLASFLANVDDSKS 165
           E+DSS++E   RNT+G++P+EWY+D  HIGYD+ G+KI K  R +D+L  FL  +++   
Sbjct: 106 ENDSSDEEDI-RNTVGNIPMEWYQDFPHIGYDLDGRKIFKPLRSKDQLEQFLDKMENPDY 164

Query: 166 WRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPE 225
           WR ++D+   ++V LT E++ LV+RL +G+    ++D Y   +D+F ++  +HP++N P 
Sbjct: 165 WRTVHDKKTGQDVRLTDEQVDLVERLQRGQFGDINYDPYQPSIDFFTHETMIHPVTNRPA 224

Query: 226 PKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIP 285
            KR FIPS  E +KV + V AI+ G I+  +P+++ P +Y LW  +   A   +H  ++P
Sbjct: 225 DKRSFIPSLIEKEKVSKLVHAIKMGWIQPRKPRDDSPAYYDLWAKEDPNAILGRHKMHVP 284

Query: 286 APKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRP-KFIPRRFTSLRSVPAYENAVK 344
           APK  LPGHE+SYNP  EY+ ++EE  +++    EDR   F+P+RF  LR+VP Y   + 
Sbjct: 285 APKLPLPGHEQSYNPPPEYLMSEEERLAWEQQDPEDRKVPFLPQRFPCLRAVPGYARFIH 344

Query: 345 DSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKG---------- 394
           + FERC+DLYLCPR RK RVN+DPE L PKLP  +DL+P+P    L Y+G          
Sbjct: 345 ERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPKPRDLQPFPTVQSLIYRGHKDLVRCISV 404

Query: 395 ----------STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLI 444
                     S D TVR WEV +GRC++ + +  A++ ++WNP P L ++A  V   V++
Sbjct: 405 APSGQWLVSGSDDCTVRFWEVGTGRCMKSVLLEGAVKSISWNPNPGLVLVAACVEHSVVL 464

Query: 445 LNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL---DGIRL--RHFKMVSS 499
           +N GLG+           H+     P++     VSW + +     +G+RL  +H K V  
Sbjct: 465 INPGLGDRLLCGATDQ--HIGGYQPPEEEGQQPVSWGEAEGTEYSNGLRLCIKHQKAVKQ 522

Query: 500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV-FHPTRSIFFVST 558
           V WH RGDY + V+P   +  + +HQLS++ S   PF+ +   V  V FHPTR  FFV+T
Sbjct: 523 VTWHARGDYFAVVLPDNGNSQVLIHQLSRRRSQN-PFRKNKGQVQKVLFHPTRPFFFVAT 581

Query: 559 KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV 618
           ++ +RVY+LLKQ L KKL T  K VSSIA+HPAGDNLI GS + KL WFDMDLS+KPY+V
Sbjct: 582 QRCVRVYNLLKQELSKKLLTNCKWVSSIAVHPAGDNLICGSYDSKLAWFDMDLSTKPYKV 641

Query: 619 LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG 678
           L+ H K +  V++H+ YPLFAS SDD +  V HGMVY+DL QNPLIVP+++LRGH     
Sbjct: 642 LRHHKKALRAVSYHKQYPLFASGSDDGSVIVCHGMVYNDLLQNPLIVPVKVLRGHAIHRD 701

Query: 679 RGVMDCKFHPRQPWLFTAGADSVIRLY 705
            GV+D  FHP QPW+F++GAD+ IRLY
Sbjct: 702 LGVLDVIFHPTQPWVFSSGADATIRLY 728

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Xenopus tropicalis (taxid: 8364)

>sp|Q562C2|BOP1_RAT Ribosome biogenesis protein BOP1 OS=Rattus norvegicus GN=Bop1 PE=2 SV=1

 Score =  547 bits (1410), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/615 (45%), Positives = 386/615 (62%), Gaps = 29/615 (4%)

Query: 118 RNTIGDVPLEWYKDEKHIGYDISGKKITKKER-QDKLASFLANVDDSKSWRKIYDEYNDE 176
           RNT+G+VPL WY D  H+GYD+ GK+I K  R +D+L  FL  +DD   WR + D+    
Sbjct: 118 RNTVGNVPLAWYDDFPHVGYDLDGKRIYKPLRTRDELDQFLDKMDDPDFWRTVQDKMTGS 177

Query: 177 EVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWE 236
           ++ LT E++ LV RL +G+   + FD Y   VD+F  D  +HP++N P  KR FIPS  E
Sbjct: 178 DLRLTDEQVALVHRLQRGQFGDSGFDPYEPAVDFFSGDIMIHPVTNRPADKRSFIPSLVE 237

Query: 237 SKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEE 296
            +KV + V AI+ G IK   P +  P FY LW  +   A   +H  ++PAPK  LPGH E
Sbjct: 238 KEKVSRLVHAIKMGWIKPRRPPDSTPSFYDLWAQEDPNAVLGRHKMHVPAPKLALPGHAE 297

Query: 297 SYNPSLEYIPTQEE-LNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYL 355
           SYNP  EY+PT+EE L   Q    E +  F+P++F SLR+VPAY   +++ FERC+DLYL
Sbjct: 298 SYNPPPEYLPTEEERLAWMQQEPIERKLNFLPQKFPSLRTVPAYGRFIQERFERCLDLYL 357

Query: 356 CPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKG--------------------S 395
           CPR RK RVN+DPE L PKLP  +DL+P+PV   L Y+G                    S
Sbjct: 358 CPRQRKMRVNVDPEDLIPKLPRPRDLQPFPVCQALVYRGHSDLVRCLSVSPGGQWLASGS 417

Query: 396 TDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ 455
            DGT+R+WEV + RC++ + +G  I+ +AWNP P + ++A ++   V++LN  LG+    
Sbjct: 418 DDGTLRLWEVATARCMKTVRVGGVIRSIAWNPNPTICLVAAAMDDAVVLLNPALGDRLLV 477

Query: 456 RRVKDLLHVETPTAPDDNMASIVSWLQ---HDKLDGIRLR--HFKMVSSVEWHRRGDYLS 510
                LL  ET T P++       WL+    ++  G+RLR  H K V+ V WH RGDYL+
Sbjct: 478 GSTDQLL--ETFTPPEEPTLQPAHWLEVSEEERQRGLRLRICHSKPVTQVTWHGRGDYLA 535

Query: 511 TVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ 570
            V+ +     + +HQLS++ S     + HG      FHPTR    V+++++IR+Y LL+Q
Sbjct: 536 VVLSSQGHTQVLIHQLSRRRSQSPFRRSHGQVQCVAFHPTRPFLLVASQRSIRIYHLLRQ 595

Query: 571 RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVA 630
            L KKL    K VSS+A+HPAGDN+I GS + KL WFD+DLS+KPY+VL+ H K +  VA
Sbjct: 596 ELTKKLMPNCKWVSSMAVHPAGDNIICGSYDSKLVWFDLDLSTKPYKVLRHHKKALRAVA 655

Query: 631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690
           FH  YPLFAS SDD +  V HGMVY+DL QNPL+VP+++L+GH+ +   GV+D  FHP Q
Sbjct: 656 FHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHSLTRDLGVLDVAFHPTQ 715

Query: 691 PWLFTAGADSVIRLY 705
           PW+F++GAD  IRL+
Sbjct: 716 PWVFSSGADGTIRLF 730

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Rattus norvegicus (taxid: 10116)

>sp|A0JMQ0|BOP1_DANRE Ribosome biogenesis protein bop1 OS=Danio rerio GN=bop1 PE=2 SV=1

 Score =  545 bits (1404), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/630 (44%), Positives = 399/630 (63%), Gaps = 31/630 (4%)

Query: 105 VEESD-SSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKER-QDKLASFLANVDD 162
           V+E D  + DE   RNT+G++P+EWYKD  HIGYD+ GKKI K  R +D+L  FL  +++
Sbjct: 149 VDEYDHDTSDEEDIRNTVGNIPMEWYKDYPHIGYDLDGKKIFKPIRNKDELDEFLDKMEN 208

Query: 163 SKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSN 222
              WR + D+    ++ L+ E++ LV RL +GK    +F++Y   VD+F  +  +HP++N
Sbjct: 209 PDYWRTVQDKMTGADIRLSDEQVDLVHRLQQGKFGDVNFNEYEPAVDFFSNEVMIHPVTN 268

Query: 223 APEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLA 282
            P+ KR FIPS  E +KV + V AI+ G IK   PKE  P++Y LW  +   +   +H  
Sbjct: 269 RPQDKRSFIPSLIEKEKVGKLVHAIKMGWIKPRRPKETTPQYYDLWAKEDPNSILGRHKM 328

Query: 283 YIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRP-KFIPRRFTSLRSVPAYEN 341
           ++PAPK KLPGHEESYNP  EY+ ++EE  ++     EDR   F+P++F+ LR+VPA+  
Sbjct: 329 HVPAPKMKLPGHEESYNPPPEYLLSEEERLAWAAQDPEDRKLSFLPQKFSCLRAVPAFSR 388

Query: 342 AVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKG------- 394
            + + FERC+DLYLCPR RK RVN++PE L PKLP  KDL+P+P    L Y+G       
Sbjct: 389 FIHERFERCLDLYLCPRQRKMRVNVNPEDLIPKLPKPKDLQPFPTTQSLVYRGHSSLVRS 448

Query: 395 -------------STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQD 441
                        S D TVR WEV + RCL+ +++G A++ VAWNP P + ++AVS    
Sbjct: 449 ISVSPSGQWLVSGSDDCTVRFWEVSTARCLKTVQVGGAVKGVAWNPNPSICLVAVSYEDS 508

Query: 442 VLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWL-----QHDKLDGIRLRHFKM 496
           VL+LN  LG+         L  + +   P++     V WL      H++   + L+H K 
Sbjct: 509 VLLLNPALGDRLLCTATDQL--ISSYAEPEEVKEQPVQWLVSEGEGHEQGHRLVLKHPKA 566

Query: 497 VSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF 555
           V  V WH +GDYL+ V+P +  S  + +HQ+SK+ +     K  GL     FHP R  FF
Sbjct: 567 VRQVTWHAKGDYLACVLPDSSSSVQVLIHQVSKRRTQNPFRKSKGLVQCVSFHPVRPYFF 626

Query: 556 VSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP 615
           V+T++ +RVY+L+KQ L KKL    K +SS+AIHP GDN+I GS + +L WFD+DLS+KP
Sbjct: 627 VATQRYVRVYNLIKQELTKKLMANCKWISSMAIHPGGDNVICGSYDCRLAWFDLDLSTKP 686

Query: 616 YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS 675
           Y+VL+ H K + +V+FH  YPL AS SDD +  V HGMVY+DL QNPLIVP+++L+GH+ 
Sbjct: 687 YKVLRHHKKALRSVSFHSHYPLLASGSDDGSVIVCHGMVYNDLLQNPLIVPVKVLKGHSI 746

Query: 676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
           ++  GV+D  FHP QPW+F++GAD+ IRLY
Sbjct: 747 THDLGVLDVTFHPTQPWVFSSGADATIRLY 776

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Danio rerio (taxid: 7955)

>sp|P97452|BOP1_MOUSE Ribosome biogenesis protein BOP1 OS=Mus musculus GN=Bop1 PE=1 SV=1

 Score =  544 bits (1402), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/615 (44%), Positives = 387/615 (62%), Gaps = 29/615 (4%)

Query: 118 RNTIGDVPLEWYKDEKHIGYDISGKKITKKER-QDKLASFLANVDDSKSWRKIYDEYNDE 176
           RNT+G+VPL WY +  H+GYD+ GK+I K  R +D+L  FL  +DD   WR + D+    
Sbjct: 119 RNTVGNVPLAWYDEFPHVGYDLDGKRIYKPLRTRDELDQFLDKMDDPDFWRTVQDKMTGR 178

Query: 177 EVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWE 236
           ++ LT E++ LV RL +G+   + F+ Y   VD+F  D  +HP++N P  KR FIPS  E
Sbjct: 179 DLRLTDEQVALVHRLQRGQFGDSGFNPYEPAVDFFSGDIMIHPVTNRPADKRSFIPSLVE 238

Query: 237 SKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEE 296
            +KV + V AI+ G IK   P +  P FY LW  +   A   +H  ++PAPK  LPGH E
Sbjct: 239 KEKVSRMVHAIKMGWIKPRRPHDPTPSFYDLWAQEDPNAVLGRHKMHVPAPKLALPGHAE 298

Query: 297 SYNPSLEYIPTQEELNSY-QLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYL 355
           SYNP  EY+PT+EE +++ Q    E +  F+P++F SLR+VPAY   +++ FERC+DLYL
Sbjct: 299 SYNPPPEYLPTEEERSAWMQQEPVERKLNFLPQKFPSLRTVPAYSRFIQERFERCLDLYL 358

Query: 356 CPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKG--------------------S 395
           CPR RK RVN+DPE L PKLP  +DL+P+PV   L Y+G                    S
Sbjct: 359 CPRQRKMRVNVDPEDLIPKLPRPRDLQPFPVCQALVYRGHSDLVRCLSVSPGGQWLASGS 418

Query: 396 TDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ 455
            DGT+++WEV + RC++ + +G  ++ +AWNP P + ++A ++   VL+LN  LG+    
Sbjct: 419 DDGTLKLWEVATARCMKTVHVGGVVRSIAWNPNPTICLVAAAMDDAVLLLNPALGDRLLV 478

Query: 456 RRVKDLLHVETPTAPDDNMASIVSWLQ---HDKLDGIRLR--HFKMVSSVEWHRRGDYLS 510
                LL   TP  P++       WL+    +   G+RLR  H K V+ V WH RGDYL+
Sbjct: 479 GSTDQLLEAFTP--PEEPALQPARWLEVSEEEHQRGLRLRICHSKPVTQVTWHGRGDYLA 536

Query: 511 TVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ 570
            V+ + E   + +HQ+S++ S     + HG      FHP+R    V+++++IR+Y LL+Q
Sbjct: 537 VVLSSQEHTQVLLHQVSRRRSQSPFRRSHGQVQCVAFHPSRPFLLVASQRSIRIYHLLRQ 596

Query: 571 RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVA 630
            L KKL    K VSS+A+HPAGDN+I GS + KL WFD+DLS+KPY+VL+ H K +  VA
Sbjct: 597 ELTKKLMPNCKWVSSMAVHPAGDNIICGSYDSKLVWFDLDLSTKPYKVLRHHKKALRAVA 656

Query: 631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690
           FH  YPLFAS SDD +  V HGMVY+DL QNPL+VP+++L+GHT +   GV+D  FHP Q
Sbjct: 657 FHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHTLTRDLGVLDVAFHPTQ 716

Query: 691 PWLFTAGADSVIRLY 705
           PW+F++GAD  IRL+
Sbjct: 717 PWVFSSGADGTIRLF 731

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Mus musculus (taxid: 10090)

>sp|Q14137|BOP1_HUMAN Ribosome biogenesis protein BOP1 OS=Homo sapiens GN=BOP1 PE=1 SV=2

 Score =  540 bits (1391), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/642 (43%), Positives = 392/642 (61%), Gaps = 37/642 (5%)

Query: 95  QTDGSEGHRGVEESDSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKER-QDKL 153
           +T+ +    G E ++ S DE   RNT+G+VPLEWY D  H+GYD+ G++I K  R +D+L
Sbjct: 110 RTEMASARIGDEYAEDSSDEEDIRNTVGNVPLEWYDDFPHVGYDLDGRRIYKPLRTRDEL 169

Query: 154 ASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKY 213
             FL  +DD   WR + D     ++ LT E++ LV+RL  G+     F+ Y   VD+F  
Sbjct: 170 DQFLDKMDDPDYWRTVQDPMTGRDLRLTDEQVALVRRLQSGQFGDVGFNPYEPAVDFFSG 229

Query: 214 DDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSS 273
           D  +HP++N P  KR FIPS  E +KV + V AI+ G I+   P++  P FY LW  +  
Sbjct: 230 DVMIHPVTNRPADKRSFIPSLVEKEKVSRMVHAIKMGWIQPRRPRDPTPSFYDLWAQEDP 289

Query: 274 AAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRP-----KFIPR 328
            A   +H  ++PAPK  LPGH ESYNP  EY+ ++EE    +L +E+  P      F+PR
Sbjct: 290 NAVLGRHKMHVPAPKLALPGHAESYNPPPEYLLSEEE----RLAWEQQEPGERKLSFLPR 345

Query: 329 RFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVAC 388
           +F SLR+VPAY   +++ FERC+DLYLCPR RK RVN+DPE L PKLP  +DL+P+P   
Sbjct: 346 KFPSLRAVPAYGRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPTCQ 405

Query: 389 YLEYKG--------------------STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPL 428
            L Y+G                    S DG++R+WEV + RC+R + +G  ++ VAWNP 
Sbjct: 406 ALVYRGHSDLVRCLSVSPGGQWLVSGSDDGSLRLWEVATARCVRTVPVGGVVKSVAWNPS 465

Query: 429 PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQ---HDK 485
           P + ++A +V   VL+LN  LG+         LL    P  P++       WL+    ++
Sbjct: 466 PAVCLVAAAVEDSVLLLNPALGDRLVAGSTDQLLSAFVP--PEEPPLQPARWLEASEEER 523

Query: 486 LDGIRLR--HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPV 543
             G+RLR  H K V+ V WH RGDYL+ V+       + +HQLS++ S     + HG   
Sbjct: 524 QVGLRLRICHGKPVTQVTWHGRGDYLAVVLATQGHTQVLIHQLSRRRSQSPFRRSHGQVQ 583

Query: 544 SSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGK 603
              FHP R    V++++++R+Y LL+Q L KKL    K VSS+A+HPAGDN+I GS + K
Sbjct: 584 RVAFHPARPFLLVASQRSVRLYHLLRQELTKKLMPNCKWVSSLAVHPAGDNVICGSYDSK 643

Query: 604 LCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPL 663
           L WFD+DLS+KPYR+L+ H K +  VAFH  YPLFAS SDD +  V HGMVY+DL QNPL
Sbjct: 644 LVWFDLDLSTKPYRMLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPL 703

Query: 664 IVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
           +VP+++L+GH  +   GV+D  FHP QPW+F++GAD  +RL+
Sbjct: 704 LVPVKVLKGHVLTRDLGVLDVIFHPTQPWVFSSGADGTVRLF 745

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Homo sapiens (taxid: 9606)

>sp|B4HN85|BOP1_DROSE Ribosome biogenesis protein BOP1 homolog OS=Drosophila sechellia GN=GM21825 PE=3 SV=1

 Score =  530 bits (1364), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/639 (42%), Positives = 400/639 (62%), Gaps = 41/639 (6%)

Query: 106 EESDSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKS 165
           ++SD+S++E   RNT+G++P+ WY + KHIGYD   KKI K  + D++  FL  ++D   
Sbjct: 149 QDSDTSDEEDI-RNTVGNIPMHWYDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDF 207

Query: 166 WRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPE 225
           WR + D    ++V LT E+I L++R++ G+ P+ D ++Y  +++WF  +    P+ N P+
Sbjct: 208 WRTVKDPLTGQDVRLTDEDIALIKRIVSGRIPNKDHEEYEPWIEWFTSEVEKMPIKNVPD 267

Query: 226 PKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEE------PKFYLLWGDDSSAAEKAK 279
            KR F+PS  E K+V + V A++ G +K  E  E E      PKFY+LW  D+S     +
Sbjct: 268 HKRSFLPSVSEKKRVSRMVHALKMGWMKTTEEVEREKQAKRGPKFYMLWETDTSREHMRR 327

Query: 280 HLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPK---FIPRRFTSLRSV 336
               + APK  LPGH ESYNP  EY+   +E   +  + +E   +   F+P++F SLR V
Sbjct: 328 IHDPVSAPKRDLPGHAESYNPPPEYLFDAKETKEWLKLKDEPHKRKLHFMPQKFKSLREV 387

Query: 337 PAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGST 396
           PAY   +++ F RC+DLYLCPR ++ ++NID E L PKLPS +DL+P+P    + Y+G T
Sbjct: 388 PAYSRYLRERFLRCLDLYLCPRAKRVKLNIDAEYLIPKLPSPRDLQPFPTVESMVYRGHT 447

Query: 397 D--------------------GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAV 436
           D                     TV+IWE+ +GRC+R +E  E ++ VAW P P+L ++AV
Sbjct: 448 DLVRSVSVEPKGEYLVSGSDDKTVKIWEIATGRCIRTIETDEVVRCVAWCPNPKLSIIAV 507

Query: 437 SVGQDVLILNTGLGNEEEQRRVKDLLHVETPTA---PDDNMASIVSWLQHD---KLDGIR 490
           + G  +L++N  +G++   ++  DLL  E P+      + + + V W   +   +  G+R
Sbjct: 508 ATGNRLLLVNPKVGDKVLVQKTDDLL-AEAPSQDVIESERIKTAVQWSNAEADEQEKGVR 566

Query: 491 --LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVF 547
             + HFK +  V WH RGDYL+TVMP G +R+  +HQLSK+ S +IPF K  GL    +F
Sbjct: 567 VVITHFKPIRQVTWHGRGDYLATVMPEGANRSALIHQLSKRRS-QIPFSKSKGLIQFVLF 625

Query: 548 HPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWF 607
           HP +  FFV+T+ NIR+YDL+KQ L+KKL T  K +S ++IHP GDNL+V + + K+ WF
Sbjct: 626 HPVKPCFFVATQHNIRIYDLVKQELVKKLLTNSKWISGMSIHPKGDNLLVSTYDKKMLWF 685

Query: 608 DMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPL 667
           D+DLS+KPY+ ++ H   + +VAFHR YPLFAS SDD    V HGMVY+DL QNPLIVPL
Sbjct: 686 DLDLSTKPYQTMRLHRNAVRSVAFHRRYPLFASGSDDQAVIVSHGMVYNDLLQNPLIVPL 745

Query: 668 EILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC 706
           + L+ H   +  GV+D  +HP QPW+F+ GADS IRLY 
Sbjct: 746 KKLQTHEKRDEFGVLDVNWHPVQPWVFSTGADSTIRLYT 784

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila sechellia (taxid: 7238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	707
255576217	735	ribosome biogenesis protein bop1, putati	0.970	0.933	0.704	0.0
359495935	691	PREDICTED: ribosome biogenesis protein B	0.884	0.904	0.770	0.0
356543403	716	PREDICTED: ribosome biogenesis protein B	0.889	0.878	0.736	0.0
356560725	718	PREDICTED: ribosome biogenesis protein B	0.869	0.856	0.749	0.0
297736657	706	unnamed protein product [Vitis vinifera]	0.892	0.893	0.752	0.0
449447541	724	PREDICTED: ribosome biogenesis protein B	0.977	0.954	0.685	0.0
84468448	738	putative WD-40 repeat protein [Trifolium	0.892	0.855	0.728	0.0
51477399	722	WD40 [Cucumis melo]	0.881	0.862	0.732	0.0
297827669	757	transducin family protein [Arabidopsis l	0.896	0.837	0.691	0.0
42569798	753	transducin/WD-40 repeat-containing prote	0.891	0.836	0.688	0.0

>gi|255576217|ref|XP_002529002.1| ribosome biogenesis protein bop1, putative [Ricinus communis] gi|223531542|gb|EEF33372.1| ribosome biogenesis protein bop1, putative [Ricinus communis]

 Score = 1042 bits (2694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/727 (70%), Positives = 601/727 (82%), Gaps = 41/727 (5%)

Query: 14  SVKKKKEKKTKDNNEPREQKEKEESQSIMKQQKNTTSRSKKEKQRKTTEDYES------L 67
           S+K + +K+  ++ EP   K++EE    M    ++ S S  ++   + ++Y         
Sbjct: 17  SIKNQSKKEKVNSREPEGHKKEEEQ---MHTHLDSESDSDYQEFSDSEDEYHGSSGASET 73

Query: 68  RESELSGDEVHGTDHDVDNADDHHEEDQTDGSEGHRGVEESDSSEDEVAPRNTIGDVPLE 127
            ES  SGDE      D DN DD   EDQ++G E  +  EESDSSEDEVAPRNTIGDVPL+
Sbjct: 74  GESNSSGDE---GSVDTDNNDDIENEDQSEGLESDQAAEESDSSEDEVAPRNTIGDVPLK 130

Query: 128 WYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRL 187
           WY+DEKHIGYDI+GKKITKKERQDKL SFLA+ DDS++WRKIYDEYNDE VELTKEE+++
Sbjct: 131 WYEDEKHIGYDIAGKKITKKERQDKLESFLASADDSENWRKIYDEYNDEVVELTKEEMKV 190

Query: 188 VQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAI 247
           ++RL+KGKAPH DFD Y  Y DWFK+D + HPLSNAPEPKRRF PSKWE+KKVV+YVRAI
Sbjct: 191 IRRLVKGKAPHFDFDPYPTYSDWFKWD-SKHPLSNAPEPKRRFTPSKWEAKKVVKYVRAI 249

Query: 248 RKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPT 307
           RKGLIKFD+PKEE P+F+LLWGDDS +AEK  HL+YIPAPKPKLPGHEESYNPSLE+IPT
Sbjct: 250 RKGLIKFDKPKEE-PRFHLLWGDDSGSAEKTGHLSYIPAPKPKLPGHEESYNPSLEFIPT 308

Query: 308 QEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNID 367
           QEE+NSYQLM EEDRPKFIP+RFTSLRS+PAYENA+ ++FERC+DLYLCPRVRKKR+NID
Sbjct: 309 QEEINSYQLMDEEDRPKFIPKRFTSLRSIPAYENAMNEAFERCLDLYLCPRVRKKRINID 368

Query: 368 PETLKPKLPSRKDLKPYPVACYLEYKG--------------------STDGTVRIWEVES 407
           PE+LKPKLPSRKDL+PYP  CY+EY+G                    S DGTVRIWEVE+
Sbjct: 369 PESLKPKLPSRKDLRPYPATCYIEYRGHTGAVMSISTEASGAWIASGSNDGTVRIWEVET 428

Query: 408 GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467
           GRCLR+ E+GEA+Q VAWNPL ELP+LA++VGQDV++LNTGLGN   Q++VK+LLHV TP
Sbjct: 429 GRCLRIWELGEAVQCVAWNPLHELPILAIAVGQDVIVLNTGLGNAGVQKQVKELLHVSTP 488

Query: 468 TAPDD--NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA-----GESRA 520
           TAPDD  N  S +SW Q +K +GIR+RHFK VSSVEWHR+GDY  T+MPA         +
Sbjct: 489 TAPDDPGNGISGLSWHQDEKHEGIRIRHFKTVSSVEWHRKGDYFCTLMPADILLLILLHS 548

Query: 521 IFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGL 580
           + +HQLSKKL+ R+PFKLHGLPVSSVFHPTRS+ FV+TKKN+R +DLLK +LIKKLETGL
Sbjct: 549 VLIHQLSKKLTQRLPFKLHGLPVSSVFHPTRSVIFVATKKNVRAFDLLKHKLIKKLETGL 608

Query: 581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS 640
           +EVSSIA+HPAGDN+IVGSREGKLCWFDMDLSSKPY+VLKCHPKDITNVAFHRSYPLFAS
Sbjct: 609 REVSSIAVHPAGDNIIVGSREGKLCWFDMDLSSKPYKVLKCHPKDITNVAFHRSYPLFAS 668

Query: 641 CSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700
            S+DCTAYVFHGMVYSDLNQNPLIVPLEILRGH+SSNGRG +DCKFHPRQPWLFTAGADS
Sbjct: 669 SSEDCTAYVFHGMVYSDLNQNPLIVPLEILRGHSSSNGRGTLDCKFHPRQPWLFTAGADS 728

Query: 701 VIRLYCH 707
           +I+LYCH
Sbjct: 729 LIKLYCH 735

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495935|ref|XP_003635118.1| PREDICTED: ribosome biogenesis protein BOP1 homolog [Vitis vinifera]

 Score = 1017 bits (2629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/657 (77%), Positives = 563/657 (85%), Gaps = 32/657 (4%)

Query: 54  KEKQRKTTEDYESLRESELSGDEVHGTDHDVDNAD-------DHHEEDQTDGSEGHRGVE 106
           K+  +  + D E L ESE  G  V   D D  +AD       D  EE++   SE H+G+E
Sbjct: 37  KQLHQGFSGDEEELTESESDG-PVLSEDEDYVSADGDDSLHNDPSEENEGGSSESHQGIE 95

Query: 107 ESDSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSW 166
           ESDSSEDEVAPRNTIGDVPLEWYKDE+H+GYDI+GKKI KK RQDKL SFLA+ DDSK+W
Sbjct: 96  ESDSSEDEVAPRNTIGDVPLEWYKDEEHVGYDIAGKKIKKKVRQDKLDSFLASADDSKNW 155

Query: 167 RKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEP 226
           RKIYDEYNDEEVELTK E RL++RLLKGKAPH +FD YA YVDWFK+DDA HPLSNAPEP
Sbjct: 156 RKIYDEYNDEEVELTKRETRLIRRLLKGKAPHAEFDPYAPYVDWFKWDDAKHPLSNAPEP 215

Query: 227 KRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKH-LAYIP 285
           KRRFIPSKWESKKVV+YVRAIRKGLIKFD+PK EEP+ Y LWGDDSS+ EKA H LAYIP
Sbjct: 216 KRRFIPSKWESKKVVEYVRAIRKGLIKFDKPK-EEPRVYHLWGDDSSSTEKAGHGLAYIP 274

Query: 286 APKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKD 345
           APK KLPGHEESYNPSLEYIPTQEE+NSYQLMYEEDRPKFIPRRF SLRSVPAYENAVK+
Sbjct: 275 APKSKLPGHEESYNPSLEYIPTQEEINSYQLMYEEDRPKFIPRRFLSLRSVPAYENAVKE 334

Query: 346 SFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYK------------ 393
           SF+RC+DLYLCPR RKKR+NIDPE+LKPKLPSRKDLKPYPV CYLEYK            
Sbjct: 335 SFDRCLDLYLCPRARKKRINIDPESLKPKLPSRKDLKPYPVTCYLEYKGHKGAVMSIATE 394

Query: 394 --------GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLIL 445
                   GS DG+VR+WEVE+GRC RV EIGEA+ YVAWNPLP L +LAVS GQDVL+L
Sbjct: 395 ASGQWIASGSIDGSVRVWEVETGRCRRVWEIGEAVHYVAWNPLPGLHILAVSSGQDVLLL 454

Query: 446 NTGLGNEEEQRRVKDLLHVETPTAPDD--NMASIVSWLQHDKLDGIRLRHFKMVSSVEWH 503
           NTGLGN+EEQ+ ++ LL +ETP + DD  N  SIVSW+Q DK  GIRL+HFK VSSVEWH
Sbjct: 455 NTGLGNDEEQKNIEQLLRIETPGSMDDTGNTTSIVSWVQDDKHGGIRLKHFKTVSSVEWH 514

Query: 504 RRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIR 563
           R+GDYLSTVMPAGESRAI +HQLSKKL+ RIPFKLHGLPVSS+FHPTRSIFF+STKKN+R
Sbjct: 515 RKGDYLSTVMPAGESRAILIHQLSKKLTQRIPFKLHGLPVSSIFHPTRSIFFISTKKNVR 574

Query: 564 VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP 623
           VYDLLKQ+L+KKLETGL+EVSSIA+HPAGDN+IVGSREGKLCWFDMDLSS+PYR+LKCHP
Sbjct: 575 VYDLLKQKLVKKLETGLREVSSIAVHPAGDNVIVGSREGKLCWFDMDLSSQPYRILKCHP 634

Query: 624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG 680
           KDITNVAFH SYPLFA+CSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH+S+NGRG
Sbjct: 635 KDITNVAFHHSYPLFATCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHSSTNGRG 691

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543403|ref|XP_003540150.1| PREDICTED: ribosome biogenesis protein BOP1 homolog [Glycine max]

 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/656 (73%), Positives = 563/656 (85%), Gaps = 27/656 (4%)

Query: 78  HGTDHDVDNADDHHEEDQTDG----SEGHRGVEESDSSEDEVAPRNTIGDVPLEWYKDEK 133
           +G   DV++A+D    +  DG    S+ H+   ESDSSEDEVAPRNTIGDVPL+WY+DE 
Sbjct: 62  NGGSGDVESAEDEDTVNDEDGGSESSDLHQEGAESDSSEDEVAPRNTIGDVPLKWYEDEP 121

Query: 134 HIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLK 193
           HIGYDI  KKI KKE+QDKL SFLA+VDDSK+WRKIYDEYNDE VELTK+EI+LV+RLLK
Sbjct: 122 HIGYDIKAKKIKKKEKQDKLDSFLASVDDSKNWRKIYDEYNDEVVELTKDEIKLVRRLLK 181

Query: 194 GKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIK 253
            +APH+DFD Y D VDWFK++DA HPLSNAPEPKRRFIPSKWE+KKVVQYVRAIR+GLI 
Sbjct: 182 NRAPHSDFDPYPDGVDWFKWEDAKHPLSNAPEPKRRFIPSKWEAKKVVQYVRAIRQGLIT 241

Query: 254 FDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNS 313
           FD+PKEE+   YLLWGDDS + E+A HLAYIPAPK KLPGH+ESYNP LEYIPTQEE+NS
Sbjct: 242 FDKPKEEDGP-YLLWGDDSGSTERANHLAYIPAPKQKLPGHDESYNPPLEYIPTQEEVNS 300

Query: 314 YQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKP 373
           YQLM+EEDRPKFIP+RF S+RS+PAYENA+KD FERC+DLYLCPRVRKKR+NIDPE+LKP
Sbjct: 301 YQLMFEEDRPKFIPKRFASMRSIPAYENAMKDCFERCLDLYLCPRVRKKRLNIDPESLKP 360

Query: 374 KLPSRKDLKPYPVACYLEYKG--------------------STDGTVRIWEVESGRCLRV 413
           KLPSRK+LKPYP  CY+EYKG                    S+DGTVRIWEVE+GRCLR 
Sbjct: 361 KLPSRKELKPYPTTCYIEYKGHEDAVTSISLEASGQWMASGSSDGTVRIWEVETGRCLRR 420

Query: 414 LEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDD- 472
            E+GE++  VAWNPLP + +LAVSVGQDVL+LNT LG++EEQ+++K+LL V++ TA DD 
Sbjct: 421 WEVGESVSCVAWNPLPNIHLLAVSVGQDVLLLNTCLGDDEEQKQIKELLWVDSSTALDDS 480

Query: 473 -NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS 531
            N A  VSWL+ DK  G+RLRHFK V++VEWHR+GDY STVMPAGESRA+ +HQLSKKL+
Sbjct: 481 GNQAPSVSWLKDDKHMGLRLRHFKTVTAVEWHRKGDYFSTVMPAGESRAVLIHQLSKKLT 540

Query: 532 HRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA 591
            ++PFKLHGL V S FHP+RSIFFV TKK++RVYDLLK ++IKKL+TGL+E SSIA+HP 
Sbjct: 541 QKLPFKLHGLAVRSTFHPSRSIFFVCTKKSVRVYDLLKTKIIKKLDTGLREASSIAVHPG 600

Query: 592 GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651
           GDNLIVGS+EGK+CWFDMDLSSKPY++LKCHPKDI NV FHRSYPLFASCSDDCTAYVFH
Sbjct: 601 GDNLIVGSKEGKMCWFDMDLSSKPYKILKCHPKDINNVIFHRSYPLFASCSDDCTAYVFH 660

Query: 652 GMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707
           GMVYSDLNQNPLIVPLEILRGHT+SNGRG++DCKFHPRQPWLFTAGAD +I+LYCH
Sbjct: 661 GMVYSDLNQNPLIVPLEILRGHTNSNGRGILDCKFHPRQPWLFTAGADKLIKLYCH 716

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560725|ref|XP_003548639.1| PREDICTED: ribosome biogenesis protein BOP1 homolog [Glycine max]

 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/638 (74%), Positives = 555/638 (86%), Gaps = 23/638 (3%)

Query: 92  EEDQTDGSEGHRGVEESDSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQD 151
           E+  ++ S+ H    ESDSSEDEVAPRNT+GDVPL+WY+DE HIGYDI GKKI KKE+QD
Sbjct: 82  EDGGSESSDLHLEGAESDSSEDEVAPRNTVGDVPLKWYEDEPHIGYDIKGKKIKKKEKQD 141

Query: 152 KLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWF 211
           KL SFLA+VDDSK+WRKIYDEYNDE VELTK+EI+LV+RLLK +APH+DFD Y D VDWF
Sbjct: 142 KLDSFLASVDDSKNWRKIYDEYNDEVVELTKDEIKLVRRLLKNRAPHSDFDPYPDSVDWF 201

Query: 212 KYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDD 271
           K++DA HPLSNAPEPKRRFIPSKWE+KKVVQYVRAIR+GLI FD+PKEE+  ++L WGDD
Sbjct: 202 KWEDAKHPLSNAPEPKRRFIPSKWEAKKVVQYVRAIRQGLITFDKPKEEDGPYHL-WGDD 260

Query: 272 SSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFT 331
           S + E+A HLAYIPAPK KLPGH+ESYNP LEYIPTQEE+NSYQLM+EEDRPKFIP+RF 
Sbjct: 261 SGSTERANHLAYIPAPKQKLPGHDESYNPPLEYIPTQEEINSYQLMFEEDRPKFIPKRFA 320

Query: 332 SLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLE 391
           S+RS+PAYENA+KD FERC+DLYLCPRVRKKR+NIDPE+LKPKLPSRK+LKPYP  CY+E
Sbjct: 321 SMRSIPAYENAMKDCFERCLDLYLCPRVRKKRLNIDPESLKPKLPSRKELKPYPTTCYIE 380

Query: 392 YKG--------------------STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPEL 431
           YKG                    S DGTVRIWEVE+GRCLR  E+GE++  VAWNPLP++
Sbjct: 381 YKGHEDAVTSISLEASGQWMASGSRDGTVRIWEVETGRCLRRWEVGESVSCVAWNPLPDI 440

Query: 432 PVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDD--NMASIVSWLQHDKLDGI 489
            +LAVSVGQDVL+LNT LG+EEEQ+R+K+LL V++ TA DD  N A  VSWL+ DK  G+
Sbjct: 441 HLLAVSVGQDVLLLNTCLGDEEEQKRIKELLWVDSSTASDDSGNKAPSVSWLKDDKHMGL 500

Query: 490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP 549
           RLRHFK V++VEWHR+GDY STVMPAGESRA+ +HQLSKKL+ R+PFKLHGL V S FHP
Sbjct: 501 RLRHFKTVTAVEWHRKGDYFSTVMPAGESRAVLIHQLSKKLTQRLPFKLHGLAVRSTFHP 560

Query: 550 TRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM 609
           +RSIFFV TKK++RVYDLLK ++IKKL+TGL+E SSIA+HP GDNLIVGS+EGK+CWFDM
Sbjct: 561 SRSIFFVCTKKSVRVYDLLKTKIIKKLDTGLREASSIAVHPGGDNLIVGSKEGKMCWFDM 620

Query: 610 DLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI 669
           DLSSKPY++LKCHPKDI NV FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI
Sbjct: 621 DLSSKPYKILKCHPKDINNVIFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI 680

Query: 670 LRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707
           LRGHT+SNGRG++DCKFHPRQPWLFTAGAD +I+LYCH
Sbjct: 681 LRGHTNSNGRGILDCKFHPRQPWLFTAGADKLIKLYCH 718

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736657|emb|CBI25674.3| unnamed protein product [Vitis vinifera]

 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/668 (75%), Positives = 562/668 (84%), Gaps = 37/668 (5%)

Query: 54  KEKQRKTTEDYESLRESELSGDEVHGTDHDVDNAD-------DHHEEDQTDGSEGHRGVE 106
           K+  +  + D E L ESE  G  V   D D  +AD       D  EE++   SE H+G+E
Sbjct: 37  KQLHQGFSGDEEELTESESDG-PVLSEDEDYVSADGDDSLHNDPSEENEGGSSESHQGIE 95

Query: 107 ESDSSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSW 166
           ESDSSEDEVAPRNTIGDVPLEWYKDE+H+GYDI+GKKI KK RQDKL SFLA+ DDSK+W
Sbjct: 96  ESDSSEDEVAPRNTIGDVPLEWYKDEEHVGYDIAGKKIKKKVRQDKLDSFLASADDSKNW 155

Query: 167 RKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEP 226
           RKIYDEYNDEEVELTK E RL++RLLKGKAPH +FD YA YVDWFK+DDA HPLSNAPEP
Sbjct: 156 RKIYDEYNDEEVELTKRETRLIRRLLKGKAPHAEFDPYAPYVDWFKWDDAKHPLSNAPEP 215

Query: 227 KRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKH-LAYIP 285
           KRRFIPSKWESKKVV+YVRAIRKGLIKFD+PK EEP+ Y LWGDDSS+ EKA H LAYIP
Sbjct: 216 KRRFIPSKWESKKVVEYVRAIRKGLIKFDKPK-EEPRVYHLWGDDSSSTEKAGHGLAYIP 274

Query: 286 APKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKD 345
           APK KLPGHEESYNPSLEYIPTQEE+NSYQLMYEEDRPKFIPRRF SLRSVPAYENAVK+
Sbjct: 275 APKSKLPGHEESYNPSLEYIPTQEEINSYQLMYEEDRPKFIPRRFLSLRSVPAYENAVKE 334

Query: 346 SFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYK------------ 393
           SF+RC+DLYLCPR RKKR+NIDPE+LKPKLPSRKDLKPYPV CYLEYK            
Sbjct: 335 SFDRCLDLYLCPRARKKRINIDPESLKPKLPSRKDLKPYPVTCYLEYKGHKGAVMSIATE 394

Query: 394 --------GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLIL 445
                   GS DG+VR+WEVE+GRC RV EIGEA+ YVAWNPLP L +LAVS GQDVL+L
Sbjct: 395 ASGQWIASGSIDGSVRVWEVETGRCRRVWEIGEAVHYVAWNPLPGLHILAVSSGQDVLLL 454

Query: 446 NTGLGNEEEQRRVKDLLHVETPTAPDD--NMASIVSWLQHDKLDGIRLRHFKMVSSVEWH 503
           NTGLGN+EEQ+ ++ LL +ETP + DD  N  SIVSW+Q DK  GIRL+HFK VSSVEWH
Sbjct: 455 NTGLGNDEEQKNIEQLLRIETPGSMDDTGNTTSIVSWVQDDKHGGIRLKHFKTVSSVEWH 514

Query: 504 RRGDYLSTVMPAGESR----AIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTK 559
           R+GDYLSTVMPA        +I +HQLSKKL+ RIPFKLHGLPVSS+FHPTRSIFF+STK
Sbjct: 515 RKGDYLSTVMPADILLMILFSILIHQLSKKLTQRIPFKLHGLPVSSIFHPTRSIFFISTK 574

Query: 560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL 619
           KN+RVYDLLKQ+L+KKLETGL+EVSSIA+HPAGDN+IVGSREGKLCWFDMDLSS+PYR+L
Sbjct: 575 KNVRVYDLLKQKLVKKLETGLREVSSIAVHPAGDNVIVGSREGKLCWFDMDLSSQPYRIL 634

Query: 620 KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR 679
           KCHPKDITNVAFH SYPLFA+CSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH+S+NGR
Sbjct: 635 KCHPKDITNVAFHHSYPLFATCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHSSTNGR 694

Query: 680 GV-MDCKF 686
           G  M C +
Sbjct: 695 GYQMICLY 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447541|ref|XP_004141526.1| PREDICTED: ribosome biogenesis protein BOP1 homolog [Cucumis sativus] gi|449517291|ref|XP_004165679.1| PREDICTED: ribosome biogenesis protein BOP1 homolog [Cucumis sativus]

 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/725 (68%), Positives = 592/725 (81%), Gaps = 34/725 (4%)

Query: 8   SAVEVSSVKKKKEKKTKDNNEPREQKEKEESQSI-MKQQKNTTSRSKKEKQRKTTEDYES 66
           S+ +   ++ K  KK    NE + Q EK+    + ++Q+  T   +  ++   ++  ++ 
Sbjct: 9   SSRKACKLQTKHGKKKSHVNESKSQPEKQNDVELDLEQEAPTLDEATVQQHLDSSPPFDC 68

Query: 67  LRESELSGDEVHGTDHDVD--NADDHHEEDQTDGSEGHRGVEESDSSEDEVAPRNTIGDV 124
             ++  +GD+ H  ++D D  N DD+   DQ        G EESDSSEDEVAPRNT+GDV
Sbjct: 69  SEDNVNAGDDHHNLENDKDQENCDDNPLPDQ--------GEEESDSSEDEVAPRNTVGDV 120

Query: 125 PLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEE 184
           PLEWY+DEKHIGYDISGKKI KKER+D+L SFLA+ DDSKSWRK+YDEYNDE +EL+KEE
Sbjct: 121 PLEWYRDEKHIGYDISGKKILKKEREDRLQSFLASADDSKSWRKVYDEYNDEIIELSKEE 180

Query: 185 IRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYV 244
           +R ++RLLKGKAPH DFD +A YVDWFK+DDA HPLSNAPEPKRRFI SKWE+KKVV+ V
Sbjct: 181 VRQLRRLLKGKAPHADFDPHAPYVDWFKWDDAKHPLSNAPEPKRRFIRSKWEAKKVVRLV 240

Query: 245 RAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEY 304
           RAIR G IKFD+PKEE+ +F+ LWGDDSS  EK  HL+YIPAPKPKLPGH+ESYNPSLEY
Sbjct: 241 RAIRNGHIKFDKPKEEQ-QFHDLWGDDSSTTEKTSHLSYIPAPKPKLPGHDESYNPSLEY 299

Query: 305 IPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRV 364
           IPTQEE+NSYQLMYEEDRPKFIPRRFTS+RSVPAY+NA+KD+FERC+DLYLCPRVRKKR+
Sbjct: 300 IPTQEEINSYQLMYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRI 359

Query: 365 NIDPETLKPKLPSRKDLKPYPVACYLEYKG--------------------STDGTVRIWE 404
           NIDPE+LKPKLP+RKDL+PYP  CYLEY+G                    S DGTVRIWE
Sbjct: 360 NIDPESLKPKLPNRKDLRPYPTTCYLEYRGHKDAVMSISTEANGQWIASGSLDGTVRIWE 419

Query: 405 VESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464
           VE+GRCL+VLE+GE ++YVAWNP P+LP+LA + G DVL+LNTGLG+ E Q ++K++LHV
Sbjct: 420 VETGRCLKVLELGEPVKYVAWNPRPDLPILAAAAGADVLLLNTGLGDGEVQAKIKEVLHV 479

Query: 465 ET--PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIF 522
           +    T    N     +WLQ DK  GIRLRHFK VS+VEWHR+GDYLSTV+PAGES+A+ 
Sbjct: 480 DKLPVTENSGNKTPAATWLQDDKTGGIRLRHFKSVSAVEWHRKGDYLSTVLPAGESKAVL 539

Query: 523 MHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKE 582
           +HQLSKKL+ +IPFKLHGLPVSSVFHPT+SI FVSTKK +RVY+LLKQ+L+KKL+TGL+E
Sbjct: 540 IHQLSKKLTQKIPFKLHGLPVSSVFHPTQSILFVSTKKEVRVYNLLKQKLLKKLKTGLRE 599

Query: 583 VSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS 642
           VSSIA+HPAGDN+IVGSREGKLCWFDMDLSS+PY++L+CHPKDITNVAFHRS PLFASCS
Sbjct: 600 VSSIAVHPAGDNVIVGSREGKLCWFDMDLSSEPYKILRCHPKDITNVAFHRSRPLFASCS 659

Query: 643 DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI 702
           DD TAYVFHGMVYSDL QNPLI PLEILRGH + NGRGVMDCKFHP QPWLFTAGADSVI
Sbjct: 660 DDGTAYVFHGMVYSDLTQNPLITPLEILRGHKTVNGRGVMDCKFHPMQPWLFTAGADSVI 719

Query: 703 RLYCH 707
           +LYCH
Sbjct: 720 KLYCH 724

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468448|dbj|BAE71307.1| putative WD-40 repeat protein [Trifolium pratense]

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/660 (72%), Positives = 559/660 (84%), Gaps = 29/660 (4%)

Query: 73  SGDEVHGTDHDVDNADDHHEEDQTDGSEGHR---GVEESDSSEDEVAPRNTIGDVPLEWY 129
           SGD     D +  + DD   E  ++GS+ H+   G +ESDSSEDEVAPRNTIG+VPL+WY
Sbjct: 82  SGD---SEDAESQDEDDVKSEGGSEGSDIHQEGVGGDESDSSEDEVAPRNTIGEVPLKWY 138

Query: 130 KDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQ 189
           +DE HIGYDI GKKI KKE++DKL SFLANVDDSK+WRKIYDEYNDE VELTK+EI++V+
Sbjct: 139 EDEPHIGYDIKGKKIKKKEKEDKLGSFLANVDDSKNWRKIYDEYNDEVVELTKDEIKIVR 198

Query: 190 RLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRK 249
           +L+K +APHTDFD Y  YVDWFK+D A HPLSNAPEPKRRFIPSKWE+KKVVQYVRAIR 
Sbjct: 199 KLMKNQAPHTDFDPYPTYVDWFKWDGAKHPLSNAPEPKRRFIPSKWEAKKVVQYVRAIRN 258

Query: 250 GLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQE 309
           G I FD+PKEE+   YLLW DDS   EKA HLAY+PAPK KLPGH+ESYNP LEYIPTQE
Sbjct: 259 GSITFDKPKEED-DAYLLWEDDSGLTEKANHLAYVPAPKQKLPGHDESYNPPLEYIPTQE 317

Query: 310 ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPE 369
           E+NSYQLMYEEDRPKFIP+RFTS+RS+PAYENA+K+SFERC+DLYLCPRVR+KR+NIDPE
Sbjct: 318 EINSYQLMYEEDRPKFIPKRFTSMRSIPAYENAMKESFERCLDLYLCPRVRRKRLNIDPE 377

Query: 370 TLKPKLPSRKDLKPYPVACYLEYKG--------------------STDGTVRIWEVESGR 409
           +LKPKLP++K+LKPYP+ CY+EYKG                    S+DGTVR+WEVE+GR
Sbjct: 378 SLKPKLPNKKELKPYPITCYIEYKGHEGAVTSISVEASGQWMASGSSDGTVRVWEVETGR 437

Query: 410 CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTA 469
           CLR  EIGEA+  V WNPLP++ +LAVSVGQDVL+LNTGLG+EEEQ+RVK+LL V++P A
Sbjct: 438 CLRRWEIGEAVNCVTWNPLPDIHILAVSVGQDVLLLNTGLGDEEEQQRVKELLLVDSPKA 497

Query: 470 PDDN--MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS 527
            ++    A  VSWL+ DK DGIRLRH K V+SVEWHR+GDY STVMPAGESR++ +HQLS
Sbjct: 498 SEETGKKAPSVSWLKDDKHDGIRLRHLKTVTSVEWHRKGDYFSTVMPAGESRSVLIHQLS 557

Query: 528 KKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIA 587
           KKLS ++PFKLHGL V S FHP+RSIFF+ TKK +RVYDLLK++LIK L TGLKE SSIA
Sbjct: 558 KKLSQKLPFKLHGLAVGSTFHPSRSIFFICTKKTVRVYDLLKRKLIKTLYTGLKEASSIA 617

Query: 588 IHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTA 647
           +HP GDNLIVGS+EGKLCWFDMDLS+KPY+ LKCHPKDI NV FHRSYPLFASCSDD TA
Sbjct: 618 VHPGGDNLIVGSKEGKLCWFDMDLSAKPYKTLKCHPKDINNVVFHRSYPLFASCSDDSTA 677

Query: 648 YVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707
           YVFHGMVYSDLNQNPLIVPLEILRGH +SNGRG++DCKFHPRQPWLFTAGAD +I+LYCH
Sbjct: 678 YVFHGMVYSDLNQNPLIVPLEILRGHANSNGRGILDCKFHPRQPWLFTAGADKLIKLYCH 737

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51477399|gb|AAU04772.1| WD40 [Cucumis melo]

 Score =  972 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/653 (73%), Positives = 559/653 (85%), Gaps = 30/653 (4%)

Query: 83  DVDNADDHH----EEDQTDGSEG---HRGVEESDSSEDEVAPRNTIGDVPLEWYKDEKHI 135
           +V+  DDHH    +EDQ +G++     +  EESDSSEDEVAPRNT+GDVPLEWY+DEKHI
Sbjct: 72  NVNAGDDHHNLENDEDQENGNDNPIPDQVEEESDSSEDEVAPRNTVGDVPLEWYRDEKHI 131

Query: 136 GYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGK 195
           GYDISGKKI KKER+D+L SFLA+ DDSKSWRK+YDEYNDE +EL+KEE+R ++RLLKGK
Sbjct: 132 GYDISGKKILKKEREDRLQSFLASADDSKSWRKVYDEYNDEVIELSKEEVRQLRRLLKGK 191

Query: 196 APHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFD 255
           APH DFD +A YVDWFK+DDA HPLSNAPEPKRRFI SKWE+KKVV+ VRAIR G IKFD
Sbjct: 192 APHADFDPHAPYVDWFKWDDAKHPLSNAPEPKRRFIRSKWEAKKVVRLVRAIRNGHIKFD 251

Query: 256 EPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQ 315
           +PKEE+ +FY LWGD+SS  EK  HL+YIPAPKPKLPGH+ESYNPSLEYIPTQEE+NSYQ
Sbjct: 252 KPKEEQ-QFYDLWGDESSTTEKTSHLSYIPAPKPKLPGHDESYNPSLEYIPTQEEINSYQ 310

Query: 316 LMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKL 375
           LMYEEDRPKFIPRRFTS+RSVPAY+NA+KD+FERC+DLYLCPRVRKKR+NIDPE+LKPKL
Sbjct: 311 LMYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKL 370

Query: 376 PSRKDLKPYPVACYLEYKG--------------------STDGTVRIWEVESGRCLRVLE 415
           P+RKDL+PYP  CYLE++G                    S DGTVRIWEVE+GRCL+V E
Sbjct: 371 PNRKDLRPYPTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWE 430

Query: 416 IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE-TPTAPDDNM 474
           +GE ++YVAWNP P+LP+LA + G DVL+LNTGLG+ E Q ++K++LHV+  P   + + 
Sbjct: 431 LGEPVKYVAWNPKPDLPILAAAAGVDVLLLNTGLGDGEVQAKIKEVLHVDKLPATENSDK 490

Query: 475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI 534
               +WLQ DK  GIRLRHFK VS+VEWHR+GDYLST++   ESRA+ +HQLSKKL+ +I
Sbjct: 491 TPAATWLQDDKTGGIRLRHFKSVSAVEWHRKGDYLSTLV-LRESRAVLIHQLSKKLTQKI 549

Query: 535 PFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDN 594
           PFKLHGLPVSSVFHPT+SI FVSTKK +RVY+LLKQ+L+KKL+TGL+EVSSIA+HPAGDN
Sbjct: 550 PFKLHGLPVSSVFHPTQSILFVSTKKEVRVYNLLKQKLLKKLKTGLREVSSIAVHPAGDN 609

Query: 595 LIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV 654
           +IVGSREGKLCWFDMDLSS+PY++L+CHPKDITNVAFHRS PLFASCSDD TAYVFHGMV
Sbjct: 610 VIVGSREGKLCWFDMDLSSEPYKILRCHPKDITNVAFHRSRPLFASCSDDGTAYVFHGMV 669

Query: 655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707
           YSDL QNPLI PLEILRGH + NGRGVMDCKFHP QPWLFTAGADSVI+LYCH
Sbjct: 670 YSDLTQNPLITPLEILRGHKNVNGRGVMDCKFHPMQPWLFTAGADSVIKLYCH 722

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827669|ref|XP_002881717.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297327556|gb|EFH57976.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/672 (69%), Positives = 554/672 (82%), Gaps = 38/672 (5%)

Query: 71  ELSGDEVHGT----DHDVDNADD---------HHEEDQTD-GSEGHRGVEESDSSEDEVA 116
           E S D+V G     +  +DN DD         + EED +D GSE    VEESDSSEDEV 
Sbjct: 89  EFSEDDVLGNLLEHEGSIDNVDDEESEQVESDNGEEDGSDEGSERDEAVEESDSSEDEVP 148

Query: 117 PRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDE 176
            RNT+GDVPLEWYKDEKHIGYDI+GKKITKKE+QDKL SFLA +DDSK+WRKIYDEYNDE
Sbjct: 149 SRNTVGDVPLEWYKDEKHIGYDITGKKITKKEKQDKLDSFLATMDDSKNWRKIYDEYNDE 208

Query: 177 EVELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWE 236
           EVELTKEE  L++R+LKG+APH DFD YA YVDWFK+DD++HPLS+APEPKRRFIPSKWE
Sbjct: 209 EVELTKEECNLMRRILKGEAPHADFDPYAPYVDWFKWDDSIHPLSSAPEPKRRFIPSKWE 268

Query: 237 SKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEE 296
           +KKV++ VRAIRKGLIKFD+P EEEP  YLLWGDDS++ +K+KHL YIP PK KLPGH+E
Sbjct: 269 AKKVLKLVRAIRKGLIKFDKP-EEEPNVYLLWGDDSTSDQKSKHLTYIPPPKLKLPGHDE 327

Query: 297 SYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLC 356
           SYNPSLEYIPT+EE  SY+LMYEEDRPKFIP+RFTSLRS+PAYENA+K+SFERC+DLYLC
Sbjct: 328 SYNPSLEYIPTEEEKASYELMYEEDRPKFIPKRFTSLRSIPAYENALKESFERCLDLYLC 387

Query: 357 PRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYK--------------------GST 396
           PRVRKKR+NIDPE+LKPKLPSRKDL+PYP +CYLEYK                    GST
Sbjct: 388 PRVRKKRINIDPESLKPKLPSRKDLRPYPNSCYLEYKGHTGAVTTISTDSSGEWIASGST 447

Query: 397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR 456
           DG+VR+WEVE+GRCL+V +  EAI  VAWNPL  LPVLAV++G+D+  LNT LG +EEQ 
Sbjct: 448 DGSVRMWEVETGRCLKVWQFDEAIMCVAWNPLSRLPVLAVAMGRDLFFLNTELGTDEEQE 507

Query: 457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG 516
             K+ LH      P+ ++A+IV+WL  +   GI++RHFK +SS++WHR+GDYLSTVM +G
Sbjct: 508 ITKERLHSGNIPEPEASVAAIVTWLPDELYGGIKIRHFKSISSIDWHRKGDYLSTVMASG 567

Query: 517 ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK-QRLIKK 575
           E+R + +HQLSK+ + R+PFK+ GLPV ++FHP+ S FFV+T+K++RVY+LLK     KK
Sbjct: 568 ETRGVVLHQLSKQKTQRLPFKIRGLPVCTLFHPSLSYFFVATRKDVRVYNLLKPGEATKK 627

Query: 576 LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSY 635
           LETGL+E+SS+AIHP GDNLIVGS+EGK+CWFDMDLSSKPY+ LK HPKDITNVA HRSY
Sbjct: 628 LETGLREISSMAIHPGGDNLIVGSKEGKMCWFDMDLSSKPYKTLKNHPKDITNVAVHRSY 687

Query: 636 PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT 695
           PLFASCS+D TAYVFHGMVY+DLNQNPLIVPLEILRGH+S    GV+DCKFHPRQPWLFT
Sbjct: 688 PLFASCSEDSTAYVFHGMVYNDLNQNPLIVPLEILRGHSSKG--GVLDCKFHPRQPWLFT 745

Query: 696 AGADSVIRLYCH 707
           AGADS+I+LYCH
Sbjct: 746 AGADSIIKLYCH 757

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569798|ref|NP_181567.3| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|330254724|gb|AEC09818.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/664 (68%), Positives = 549/664 (82%), Gaps = 34/664 (5%)

Query: 75  DEVHGTDHDVDNADD---------HHEEDQTD-GSEGHRGVEESDSSEDEVAPRNTIGDV 124
           D+V   D  +DN DD         ++EE  +D  SE    VEESDSSEDEV  RNT+G+V
Sbjct: 93  DDVLEHDGSIDNEDDDGSEHVGSDNNEEHGSDEDSERGEAVEESDSSEDEVPSRNTVGNV 152

Query: 125 PLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEE 184
           PL+WY+DEKHIGYD++GKKITKKE+QDKL SFLA +DDSK+WRKIYDEYNDE+VELTKEE
Sbjct: 153 PLKWYEDEKHIGYDLTGKKITKKEKQDKLDSFLATIDDSKTWRKIYDEYNDEDVELTKEE 212

Query: 185 IRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYV 244
            ++VQR+LKG+APH DFD YA YV+WFK+DDA+HPLS+APEPKRRFIPSKWE+KKVV+ V
Sbjct: 213 SKIVQRILKGEAPHADFDPYAPYVEWFKHDDAIHPLSSAPEPKRRFIPSKWEAKKVVKIV 272

Query: 245 RAIRKGLIKFDEPKEEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEY 304
           RAIRKG IKFD+P EEEP  YLLWGDDS++ +K+KHL YIP PK KLPGH+ESYNPSLEY
Sbjct: 273 RAIRKGWIKFDKP-EEEPNVYLLWGDDSTSDQKSKHLTYIPPPKLKLPGHDESYNPSLEY 331

Query: 305 IPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRV 364
           IPT+EE  SY+LM+EEDRPKFIP RFTSLRS+PAYENA+K+SFERC+DLYLCPRVRKKR+
Sbjct: 332 IPTEEEKASYELMFEEDRPKFIPTRFTSLRSIPAYENALKESFERCLDLYLCPRVRKKRI 391

Query: 365 NIDPETLKPKLPSRKDLKPYPVACYLEYK--------------------GSTDGTVRIWE 404
           NIDPE+LKPKLPSRKDL+PYP +CYLEYK                    GSTDG+VR+WE
Sbjct: 392 NIDPESLKPKLPSRKDLRPYPNSCYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMWE 451

Query: 405 VESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV 464
           VE+GRCL+V +  EAI  VAWNPL  LPVLAV++G+D+  LNT LG +EEQ   K+ LH 
Sbjct: 452 VETGRCLKVWQFDEAIMCVAWNPLSRLPVLAVAMGRDLFFLNTELGTDEEQEITKERLHS 511

Query: 465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH 524
                PD ++A+IV+WL  +   GI++RHFK +SS++WHR+GDYLSTVM +GE+R + +H
Sbjct: 512 GNIPEPDASVAAIVTWLPDELYGGIKIRHFKSISSIDWHRKGDYLSTVMASGETRGVVLH 571

Query: 525 QLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK-QRLIKKLETGLKEV 583
           QLSK+ + R+PFK+ GLPV ++FHP+ S FFV+T+K++RVY+LLK     KKLETGL+E+
Sbjct: 572 QLSKQKTQRLPFKIRGLPVCTLFHPSLSYFFVATRKDVRVYNLLKPGEATKKLETGLREI 631

Query: 584 SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD 643
           SS+AIHP GDNLIVGS+EGK+CWFDMDLSSKPY+ LK HPKDITNVA HRSYPLFASCS+
Sbjct: 632 SSMAIHPGGDNLIVGSKEGKMCWFDMDLSSKPYKTLKNHPKDITNVAVHRSYPLFASCSE 691

Query: 644 DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR 703
           D TAYVFHGMVY+DLNQNPLIVPLEILRGH+S    GV+DCKFHPRQPWLFTAGADS+I+
Sbjct: 692 DSTAYVFHGMVYNDLNQNPLIVPLEILRGHSSKG--GVLDCKFHPRQPWLFTAGADSIIK 749

Query: 704 LYCH 707
           LYCH
Sbjct: 750 LYCH 753

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	707
TAIR|locus:2063099	753	AT2G40360 "AT2G40360" [Arabido	0.486	0.456	0.657	1.6e-250
ZFIN|ZDB-GENE-030219-109	785	bop1 "block of proliferation 1	0.437	0.393	0.467	5.5e-149
UNIPROTKB|F1MRX4	744	BOP1 "Uncharacterized protein"	0.437	0.415	0.484	3.8e-148
UNIPROTKB|Q7ZXX9	728	bop1-b "Ribosome biogenesis pr	0.489	0.475	0.449	1.4e-146
UNIPROTKB|Q7T0W1	728	bop1-a "Ribosome biogenesis pr	0.489	0.475	0.449	1.3e-145
UNIPROTKB|Q14137	746	BOP1 "Ribosome biogenesis prot	0.437	0.414	0.455	2.7e-145
UNIPROTKB|F1RSM4	617	BOP1 "Uncharacterized protein"	0.437	0.500	0.468	8.8e-145
RGD|1310589	731	Bop1 "block of proliferation 1	0.437	0.422	0.465	1.8e-144
UNIPROTKB|A4IHS2	729	bop1 "Ribosome biogenesis prot	0.490	0.475	0.458	3e-144
UNIPROTKB|Q96Q25	634	KM-PA-2 "Uncharacterized prote	0.437	0.487	0.455	2.4e-140

TAIR|locus:2063099 AT2G40360 "AT2G40360" [Arabidopsis thaliana (taxid:3702)]

 Score = 1247 (444.0 bits), Expect = 1.6e-250, Sum P(2) = 1.6e-250
 Identities = 230/350 (65%), Positives = 281/350 (80%)

Query:    61 TEDYESLR-ESELSGDEVHGTDH-DVDNADDHHEEDQTDGSEGHRGVXXXXXXXXXVAPR 118
             ++D + L  +  +  ++  G++H   DN ++H  ++ ++  E    V         V  R
Sbjct:    90 SDDDDVLEHDGSIDNEDDDGSEHVGSDNNEEHGSDEDSERGEA---VEESDSSEDEVPSR 146

Query:   119 NTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEV 178
             NT+G+VPL+WY+DEKHIGYD++GKKITKKE+QDKL SFLA +DDSK+WRKIYDEYNDE+V
Sbjct:   147 NTVGNVPLKWYEDEKHIGYDLTGKKITKKEKQDKLDSFLATIDDSKTWRKIYDEYNDEDV 206

Query:   179 ELTKEEIRLVQRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESK 238
             ELTKEE ++VQR+LKG+APH DFD YA YV+WFK+DDA+HPLS+APEPKRRFIPSKWE+K
Sbjct:   207 ELTKEESKIVQRILKGEAPHADFDPYAPYVEWFKHDDAIHPLSSAPEPKRRFIPSKWEAK 266

Query:   239 KVVQYVRAIRKGLIKFDXXXXXXXXFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESY 298
             KVV+ VRAIRKG IKFD         YLLWGDDS++ +K+KHL YIP PK KLPGH+ESY
Sbjct:   267 KVVKIVRAIRKGWIKFDKPEEEPNV-YLLWGDDSTSDQKSKHLTYIPPPKLKLPGHDESY 325

Query:   299 NPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPR 358
             NPSLEYIPT+EE  SY+LM+EEDRPKFIP RFTSLRS+PAYENA+K+SFERC+DLYLCPR
Sbjct:   326 NPSLEYIPTEEEKASYELMFEEDRPKFIPTRFTSLRSIPAYENALKESFERCLDLYLCPR 385

Query:   359 VRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG 408
             VRKKR+NIDPE+LKPKLPSRKDL+PYP +CYLEYKG T     I    SG
Sbjct:   386 VRKKRINIDPESLKPKLPSRKDLRPYPNSCYLEYKGHTGAVTSISTDSSG 435

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

ZFIN|ZDB-GENE-030219-109 bop1 "block of proliferation 1" [Danio rerio (taxid:7955)]

 Score = 746 (267.7 bits), Expect = 5.5e-149, Sum P(3) = 5.5e-149
 Identities = 149/319 (46%), Positives = 209/319 (65%)

Query:   394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
             GS D TVR WEV + RCL+ +++G A++ VAWNP P + ++AVS    VL+LN  LG+  
Sbjct:   469 GSDDCTVRFWEVSTARCLKTVQVGGAVKGVAWNPNPSICLVAVSYEDSVLLLNPALGDRL 528

Query:   454 EQRRVKDLLHVETPTAPDDNMASIVSWLQ-----HDKLDGIRLRHFKMVSSVEWHRRGDY 508
                    L  + +   P++     V WL      H++   + L+H K V  V WH +GDY
Sbjct:   529 LCTATDQL--ISSYAEPEEVKEQPVQWLVSEGEGHEQGHRLVLKHPKAVRQVTWHAKGDY 586

Query:   509 LSTVMPAGESRA-IFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKKNIRVYD 566
             L+ V+P   S   + +HQ+SK+ +   PF K  GL     FHP R  FFV+T++ +RVY+
Sbjct:   587 LACVLPDSSSSVQVLIHQVSKRRTQN-PFRKSKGLVQCVSFHPVRPYFFVATQRYVRVYN 645

Query:   567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI 626
             L+KQ L KKL    K +SS+AIHP GDN+I GS + +L WFD+DLS+KPY+VL+ H K +
Sbjct:   646 LIKQELTKKLMANCKWISSMAIHPGGDNVICGSYDCRLAWFDLDLSTKPYKVLRHHKKAL 705

Query:   627 TNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF 686
              +V+FH  YPL AS SDD +  V HGMVY+DL QNPLIVP+++L+GH+ ++  GV+D  F
Sbjct:   706 RSVSFHSHYPLLASGSDDGSVIVCHGMVYNDLLQNPLIVPVKVLKGHSITHDLGVLDVTF 765

Query:   687 HPRQPWLFTAGADSVIRLY 705
             HP QPW+F++GAD+ IRLY
Sbjct:   766 HPTQPWVFSSGADATIRLY 784

GO:0006364 "rRNA processing" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

UNIPROTKB|F1MRX4 BOP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 771 (276.5 bits), Expect = 3.8e-148, Sum P(3) = 3.8e-148
 Identities = 154/318 (48%), Positives = 208/318 (65%)

Query:   394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
             GS DG+VR+WEV + RC+R + +G  ++ VAWNP P + ++AV+V   VL+LN  LG+  
Sbjct:   429 GSDDGSVRLWEVATARCMRTVPVGGVVKSVAWNPHPTVCLVAVAVEDTVLLLNPALGDRL 488

Query:   454 EQRRVKDLLHVETPTAPDDNMASIVSWL---QHDKLDGIRLR--HFKMVSSVEWHRRGDY 508
                    LL   TP  P D  +    WL   Q ++ DG+RLR  H K V+ V WH RGDY
Sbjct:   489 VVGSTDQLLSAFTP--PLDPASQPAHWLEASQEERQDGLRLRIHHGKPVTQVTWHGRGDY 546

Query:   509 LSTVMPAGESRAIFMHQLSKKLSHRIPFKL-HGLPVSSVFHPTRSIFFVSTKKNIRVYDL 567
             L+ V+       + +HQLS++ S   PF+  HG      FHPTR    V++++ +R+Y L
Sbjct:   547 LAAVLATPGHTQVLIHQLSRRRSQS-PFRRSHGQVQRVAFHPTRPFLLVASQRCVRLYHL 605

Query:   568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT 627
             L+Q L KKL    K VSS+A+HPAGDN+I GS + KL WFDMDLS+KPYRVL+ H K + 
Sbjct:   606 LRQELTKKLMPNCKWVSSLAVHPAGDNIICGSYDSKLVWFDMDLSTKPYRVLRHHKKALR 665

Query:   628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH 687
              VAFH  YPLFAS SDD +  V HGMVY+DL QNPL+VP+++L+GH  +   GV+D  FH
Sbjct:   666 AVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHALTRDLGVLDVAFH 725

Query:   688 PRQPWLFTAGADSVIRLY 705
             P QPW+F++GAD  +RL+
Sbjct:   726 PTQPWVFSSGADGTLRLF 743

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000448 "cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

UNIPROTKB|Q7ZXX9 bop1-b "Ribosome biogenesis protein bop1-B" [Xenopus laevis (taxid:8355)]

 Score = 770 (276.1 bits), Expect = 1.4e-146, Sum P(2) = 1.4e-146
 Identities = 163/363 (44%), Positives = 231/363 (63%)

Query:   355 LCPRVRKKRVNIDP-ETLKPKL-PSRKDL----KPYPVACYLEYKGSTDGTVRIWEVESG 408
             L P++ K R ++ P  T++  +    KDL       P   +L   GS D +VR WEV +G
Sbjct:   370 LIPKLPKPR-DLQPFPTIQSMIYKGHKDLVRCISVSPSGQWL-VSGSDDCSVRFWEVSTG 427

Query:   409 RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT 468
             RC++ + +  A++ ++WNP P L ++A  V + V+++N GLG+           H+    
Sbjct:   428 RCMKSVVLEGAVKSISWNPNPVLVLVAACVDRSVVLINPGLGDRLLCSATDQ--HISGYQ 485

Query:   469 APDDNMASIVSWLQHDKLD---GIRL--RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFM 523
              P++ +   V+W + +  +   G+RL  +H K V  V +H RGDY + V+P   +  + +
Sbjct:   486 PPEEEVQQPVTWEEAEGSEYSSGLRLWIKHQKEVKQVTFHARGDYFAVVLPDNGNSQVLI 545

Query:   524 HQLSKKLSHRIPFKLHGLPVSSV-FHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKE 582
             HQLS++ S   PF+ +   V  V FHPTR  FFV+T++ +RVY+LLKQ L KKL T  K 
Sbjct:   546 HQLSRRRSQN-PFRKNKGQVQKVLFHPTRPFFFVATQRYVRVYNLLKQELTKKLLTNCKW 604

Query:   583 VSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS 642
             VSSIA+HPAGDNLI GS + KL WFDMDLS+KPY+VL+ H K +  V+FH+SYPLFAS S
Sbjct:   605 VSSIAVHPAGDNLICGSYDSKLAWFDMDLSTKPYKVLRHHKKALRAVSFHKSYPLFASGS 664

Query:   643 DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI 702
             DD +  V HGMVY+DL QNPLIVP+++LRGH      GV+D  FHP QPW+F++GAD  I
Sbjct:   665 DDASVIVCHGMVYNDLLQNPLIVPVKVLRGHAIHRDLGVLDVMFHPTQPWVFSSGADGTI 724

Query:   703 RLY 705
             RL+
Sbjct:   725 RLF 727

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

UNIPROTKB|Q7T0W1 bop1-a "Ribosome biogenesis protein bop1-A" [Xenopus laevis (taxid:8355)]

 Score = 766 (274.7 bits), Expect = 1.3e-145, Sum P(2) = 1.3e-145
 Identities = 163/363 (44%), Positives = 232/363 (63%)

Query:   355 LCPRVRKKRVNIDP-ETLKPKL-PSRKDL----KPYPVACYLEYKGSTDGTVRIWEVESG 408
             L P++ K R ++ P  T++  +    KDL       P   +L   GS D +VR WEV +G
Sbjct:   370 LIPKLPKPR-DLQPFPTIQSLIYKGHKDLVRCISVSPSGQWL-VSGSDDCSVRFWEVSTG 427

Query:   409 RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT 468
             RC++ + +  A++ ++WNP P L ++A  V + V+++N GLG+           H+    
Sbjct:   428 RCMKSVVLEGAVKSISWNPNPGLVLVAACVDRSVVLINPGLGDRLLCSATDQ--HISGYQ 485

Query:   469 APDDNMASIVSWLQHDKL---DGIRL--RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFM 523
              P++ +   V+W + +     +G+RL  +H K V  V +H RGDY + V+P   +  + +
Sbjct:   486 PPEEEVQQPVTWEEVEGAQYSNGLRLCIKHQKEVKQVTFHARGDYFAVVLPDNGNSQVLI 545

Query:   524 HQLSKKLSHRIPFKLHGLPVSSV-FHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKE 582
             HQLS++ S   PF+ +   V  V FHPTR  FFV+T++ +RVY+LLKQ L KKL T  K 
Sbjct:   546 HQLSRRRSQN-PFRKNKGQVQKVLFHPTRPFFFVATQRYVRVYNLLKQELTKKLLTNCKW 604

Query:   583 VSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS 642
             VSSIA+HPAGDNLI GS + KL WFDMDLS+KPY+VL+ H K +  V+FH+SYPLFAS S
Sbjct:   605 VSSIAVHPAGDNLICGSYDSKLAWFDMDLSTKPYKVLRHHKKALRAVSFHKSYPLFASGS 664

Query:   643 DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI 702
             DD +  V HGMVY+DL QNPLIVP+++LRGH      GV+D  FHP QPW+F++GAD+ I
Sbjct:   665 DDGSVIVCHGMVYNDLLQNPLIVPVKVLRGHAIHRDLGVLDVTFHPTQPWVFSSGADATI 724

Query:   703 RLY 705
             RL+
Sbjct:   725 RLF 727

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

UNIPROTKB|Q14137 BOP1 "Ribosome biogenesis protein BOP1" [Homo sapiens (taxid:9606)]

 Score = 739 (265.2 bits), Expect = 2.7e-145, Sum P(3) = 2.7e-145
 Identities = 145/318 (45%), Positives = 205/318 (64%)

Query:   394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
             GS DG++R+WEV + RC+R + +G  ++ VAWNP P + ++A +V   VL+LN  LG+  
Sbjct:   431 GSDDGSLRLWEVATARCVRTVPVGGVVKSVAWNPSPAVCLVAAAVEDSVLLLNPALGDRL 490

Query:   454 EQRRVKDLLHVETPTAPDDNMASIVSWLQ---HDKLDGIRLR--HFKMVSSVEWHRRGDY 508
                    LL    P  P++       WL+    ++  G+RLR  H K V+ V WH RGDY
Sbjct:   491 VAGSTDQLLSAFVP--PEEPPLQPARWLEASEEERQVGLRLRICHGKPVTQVTWHGRGDY 548

Query:   509 LSTVMPAGESRAIFMHQLSKKLSHRIPFKL-HGLPVSSVFHPTRSIFFVSTKKNIRVYDL 567
             L+ V+       + +HQLS++ S   PF+  HG      FHP R    V++++++R+Y L
Sbjct:   549 LAVVLATQGHTQVLIHQLSRRRSQS-PFRRSHGQVQRVAFHPARPFLLVASQRSVRLYHL 607

Query:   568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT 627
             L+Q L KKL    K VSS+A+HPAGDN+I GS + KL WFD+DLS+KPYR+L+ H K + 
Sbjct:   608 LRQELTKKLMPNCKWVSSLAVHPAGDNVICGSYDSKLVWFDLDLSTKPYRMLRHHKKALR 667

Query:   628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH 687
              VAFH  YPLFAS SDD +  V HGMVY+DL QNPL+VP+++L+GH  +   GV+D  FH
Sbjct:   668 AVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHVLTRDLGVLDVIFH 727

Query:   688 PRQPWLFTAGADSVIRLY 705
             P QPW+F++GAD  +RL+
Sbjct:   728 PTQPWVFSSGADGTVRLF 745

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0070545 "PeBoW complex" evidence=IDA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0008283 "cell proliferation" evidence=NAS

GO:0042254 "ribosome biogenesis" evidence=IC;NAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

UNIPROTKB|F1RSM4 BOP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 756 (271.2 bits), Expect = 8.8e-145, Sum P(2) = 8.8e-145
 Identities = 149/318 (46%), Positives = 206/318 (64%)

Query:   394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
             GS DG+VR+WE  + RC+R + +G  ++ VAWNP P + ++AV+V   VL+LN  +G+  
Sbjct:   302 GSDDGSVRLWEAATARCVRTVPVGGVVRSVAWNPQPAICLVAVAVEDTVLLLNPTVGDRL 361

Query:   454 EQRRVKDLLHVETPTAPDDNMASIVSWLQ---HDKLDGIRLR--HFKMVSSVEWHRRGDY 508
                    LL   TP  P +  A    WL+    ++  G+RLR  H K V+ V WH RGDY
Sbjct:   362 AVSSTDQLLSAYTP--PAEPAAQPAQWLEASEEERRGGLRLRVCHGKPVTQVTWHGRGDY 419

Query:   509 LSTVMPAGESRAIFMHQLSKKLSHRIPFKL-HGLPVSSVFHPTRSIFFVSTKKNIRVYDL 567
             L+ V+       + +HQLS++ S   PF+  HG      FHP R    V++++++R+Y L
Sbjct:   420 LAVVLATTGHTQVLIHQLSRRRSQS-PFRRSHGQVQRVAFHPVRPFLLVASQRSVRLYHL 478

Query:   568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT 627
             L+Q L KKL    K VSS+A+HPAGDN+I GS + KL WFD+DLS+KPYRVL+ H K + 
Sbjct:   479 LRQELTKKLLPNCKWVSSLAVHPAGDNVICGSYDSKLVWFDLDLSTKPYRVLRHHKKALR 538

Query:   628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH 687
              VAFH  YPLFAS SDD +  V HGMVY+DL QNPL+VP+++L+GH  +   GV+D  FH
Sbjct:   539 AVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHALTRDLGVLDVAFH 598

Query:   688 PRQPWLFTAGADSVIRLY 705
             P QPW+F+AGAD  +RL+
Sbjct:   599 PTQPWVFSAGADGTVRLF 616

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000448 "cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

RGD|1310589 Bop1 "block of proliferation 1" [Rattus norvegicus (taxid:10116)]

 Score = 756 (271.2 bits), Expect = 1.8e-144, Sum P(2) = 1.8e-144
 Identities = 148/318 (46%), Positives = 210/318 (66%)

Query:   394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
             GS DGT+R+WEV + RC++ + +G  I+ +AWNP P + ++A ++   V++LN  LG+  
Sbjct:   416 GSDDGTLRLWEVATARCMKTVRVGGVIRSIAWNPNPTICLVAAAMDDAVVLLNPALGDRL 475

Query:   454 EQRRVKDLLHVETPTAPDDNMASIVSWLQ---HDKLDGIRLR--HFKMVSSVEWHRRGDY 508
                    LL  ET T P++       WL+    ++  G+RLR  H K V+ V WH RGDY
Sbjct:   476 LVGSTDQLL--ETFTPPEEPTLQPAHWLEVSEEERQRGLRLRICHSKPVTQVTWHGRGDY 533

Query:   509 LSTVMPAGESRAIFMHQLSKKLSHRIPFKL-HGLPVSSVFHPTRSIFFVSTKKNIRVYDL 567
             L+ V+ +     + +HQLS++ S   PF+  HG      FHPTR    V+++++IR+Y L
Sbjct:   534 LAVVLSSQGHTQVLIHQLSRRRSQS-PFRRSHGQVQCVAFHPTRPFLLVASQRSIRIYHL 592

Query:   568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT 627
             L+Q L KKL    K VSS+A+HPAGDN+I GS + KL WFD+DLS+KPY+VL+ H K + 
Sbjct:   593 LRQELTKKLMPNCKWVSSMAVHPAGDNIICGSYDSKLVWFDLDLSTKPYKVLRHHKKALR 652

Query:   628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH 687
              VAFH  YPLFAS SDD +  V HGMVY+DL QNPL+VP+++L+GH+ +   GV+D  FH
Sbjct:   653 AVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHSLTRDLGVLDVAFH 712

Query:   688 PRQPWLFTAGADSVIRLY 705
             P QPW+F++GAD  IRL+
Sbjct:   713 PTQPWVFSSGADGTIRLF 730

GO:0000448 "cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA;ISO

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO;ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0042273 "ribosomal large subunit biogenesis" evidence=ISO

GO:0043021 "ribonucleoprotein complex binding" evidence=IEA;ISO

GO:0051726 "regulation of cell cycle" evidence=IEA;ISO;ISS

GO:0070545 "PeBoW complex" evidence=ISO;ISS

UNIPROTKB|A4IHS2 bop1 "Ribosome biogenesis protein bop1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 765 (274.4 bits), Expect = 3.0e-144, Sum P(2) = 3.0e-144
 Identities = 166/362 (45%), Positives = 229/362 (63%)

Query:   355 LCPRVRKKRVNIDPETLKPKLPSR--KDL-KPYPVACYLEY--KGSTDGTVRIWEVESGR 409
             L P++ K R ++ P      L  R  KDL +   VA   ++   GS D TVR WEV +GR
Sbjct:   371 LIPKLPKPR-DLQPFPTVQSLIYRGHKDLVRCISVAPSGQWLVSGSDDCTVRFWEVGTGR 429

Query:   410 CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTA 469
             C++ + +  A++ ++WNP P L ++A  V   V+++N GLG+           H+     
Sbjct:   430 CMKSVLLEGAVKSISWNPNPGLVLVAACVEHSVVLINPGLGDRLLCGATDQ--HIGGYQP 487

Query:   470 PDDNMASIVSWLQHDKLD---GIRL--RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH 524
             P++     VSW + +  +   G+RL  +H K V  V WH RGDY + V+P   +  + +H
Sbjct:   488 PEEEGQQPVSWGEAEGTEYSNGLRLCIKHQKAVKQVTWHARGDYFAVVLPDNGNSQVLIH 547

Query:   525 QLSKKLSHRIPFKLHGLPVSSV-FHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEV 583
             QLS++ S   PF+ +   V  V FHPTR  FFV+T++ +RVY+LLKQ L KKL T  K V
Sbjct:   548 QLSRRRSQN-PFRKNKGQVQKVLFHPTRPFFFVATQRCVRVYNLLKQELSKKLLTNCKWV 606

Query:   584 SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD 643
             SSIA+HPAGDNLI GS + KL WFDMDLS+KPY+VL+ H K +  V++H+ YPLFAS SD
Sbjct:   607 SSIAVHPAGDNLICGSYDSKLAWFDMDLSTKPYKVLRHHKKALRAVSYHKQYPLFASGSD 666

Query:   644 DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR 703
             D +  V HGMVY+DL QNPLIVP+++LRGH      GV+D  FHP QPW+F++GAD+ IR
Sbjct:   667 DGSVIVCHGMVYNDLLQNPLIVPVKVLRGHAIHRDLGVLDVIFHPTQPWVFSSGADATIR 726

Query:   704 LY 705
             LY
Sbjct:   727 LY 728

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

UNIPROTKB|Q96Q25 KM-PA-2 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 739 (265.2 bits), Expect = 2.4e-140, Sum P(2) = 2.4e-140
 Identities = 145/318 (45%), Positives = 205/318 (64%)

Query:   394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
             GS DG++R+WEV + RC+R + +G  ++ VAWNP P + ++A +V   VL+LN  LG+  
Sbjct:   319 GSDDGSLRLWEVATARCVRTVPVGGVVKSVAWNPSPAVCLVAAAVEDSVLLLNPALGDRL 378

Query:   454 EQRRVKDLLHVETPTAPDDNMASIVSWLQ---HDKLDGIRLR--HFKMVSSVEWHRRGDY 508
                    LL    P  P++       WL+    ++  G+RLR  H K V+ V WH RGDY
Sbjct:   379 VAGSTDQLLSAFVP--PEEPPLQPARWLEASEEERQVGLRLRICHGKPVTQVTWHGRGDY 436

Query:   509 LSTVMPAGESRAIFMHQLSKKLSHRIPFKL-HGLPVSSVFHPTRSIFFVSTKKNIRVYDL 567
             L+ V+       + +HQLS++ S   PF+  HG      FHP R    V++++++R+Y L
Sbjct:   437 LAVVLATQGHTQVLIHQLSRRRSQS-PFRRSHGQVQRVAFHPARPFLLVASQRSVRLYHL 495

Query:   568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT 627
             L+Q L KKL    K VSS+A+HPAGDN+I GS + KL WFD+DLS+KPYR+L+ H K + 
Sbjct:   496 LRQELTKKLMPNCKWVSSLAVHPAGDNVICGSYDSKLVWFDLDLSTKPYRMLRHHKKALR 555

Query:   628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH 687
              VAFH  YPLFAS SDD +  V HGMVY+DL QNPL+VP+++L+GH  +   GV+D  FH
Sbjct:   556 AVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHVLTRDLGVLDVIFH 615

Query:   688 PRQPWLFTAGADSVIRLY 705
             P QPW+F++GAD  +RL+
Sbjct:   616 PTQPWVFSSGADGTVRLF 633

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9U2A9	BOP1_CAEEL	No assigned EC number	0.3763	0.8373	0.8783	yes	no
P97452	BOP1_MOUSE	No assigned EC number	0.4455	0.8288	0.8005	yes	no
Q14137	BOP1_HUMAN	No assigned EC number	0.4330	0.8557	0.8109	yes	no
A4IHS2	BOP1_XENTR	No assigned EC number	0.4497	0.8415	0.8161	yes	no
Q562C2	BOP1_RAT	No assigned EC number	0.4536	0.8288	0.8016	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.4__2150__AT2G40360.1	annotation not avaliable (757 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh1_pm.C_scaffold_6001142	annotation not avaliable (587 aa)				•	•	•	•		0.899
	fgenesh1_pm.C_scaffold_7002163	annotation not avaliable (187 aa)				•	•		•		0.816
	fgenesh2_kg.5__2151__AT3G57150.1	annotation not avaliable (561 aa)				•	•		•		0.807
	fgenesh2_kg.6__1533__AT5G15550.1	annotation not avaliable (433 aa)				•	•	•	•		0.802
	fgenesh2_kg.3__3219__AT2G19540.1	annotation not avaliable (470 aa)				•	•		•		0.762
	scaffold_600620.1	annotation not avaliable (260 aa)				•	•		•		0.741
	fgenesh2_kg.3__2575__AT3G23620.1	annotation not avaliable (313 aa)				•	•		•		0.718
	scaffold_101731.1	annotation not avaliable (895 aa)				•					0.696
	scaffold_604131.1	annotation not avaliable (347 aa)				•	•				0.667
	fgenesh2_kg.3__2374__AT3G21540.1	annotation not avaliable (954 aa)				•				•	0.654

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	707
pfam08145	259	pfam08145, BOP1NT, BOP1NT (NUC169) domain	1e-133
smart01035	264	smart01035, BOP1NT, BOP1NT (NUC169) domain	1e-121
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-27
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04

>gnl|CDD|219727 pfam08145, BOP1NT, BOP1NT (NUC169) domain

 Score =  393 bits (1013), Expect = e-133
 Identities = 154/260 (59%), Positives = 189/260 (72%), Gaps = 4/260 (1%)

Query: 129 YKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLV 188
           Y D  HIGYDI GKKI K    D L  FL  +DD  +WR IYD+    +V LT E++ L+
Sbjct: 1   YDDYPHIGYDIDGKKIMKPATGDALDDFLDKIDDPNAWRTIYDKLTGRDVVLTDEDLELI 60

Query: 189 QRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIR 248
           +R+ KG+ P   +D Y  YV+WF  +D +HPLSNAPEPKRRFIPSKWE+KKV++ VRAIR
Sbjct: 61  RRIQKGEVPDDGYDPYEPYVEWFTEEDEIHPLSNAPEPKRRFIPSKWEAKKVMKLVRAIR 120

Query: 249 KGLIKFDEPKEE--EPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIP 306
           +G IK ++PKEE  EPKFY LW D+    EK +HL +IPAPK  LPGHEESYNP  EY+P
Sbjct: 121 EGWIKPEKPKEEDEEPKFYDLWADE-DTTEKRRHLMHIPAPKLPLPGHEESYNPPPEYLP 179

Query: 307 TQEELNSYQLMYEEDRP-KFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVN 365
           T+EE   +  M  EDR   F+P++F SLR VPAYE  +K+ FERC+DLYLCPR RK R+N
Sbjct: 180 TEEERKEWLEMDPEDRKINFLPQKFDSLRKVPAYEKFIKERFERCLDLYLCPRSRKNRLN 239

Query: 366 IDPETLKPKLPSRKDLKPYP 385
           IDPE+L PKLPS KDLKP+P
Sbjct: 240 IDPESLLPKLPSPKDLKPFP 259

This N terminal domain is found in BOP1-like WD40 proteins. Length = 259

>gnl|CDD|214986 smart01035, BOP1NT, BOP1NT (NUC169) domain

 Score =  363 bits (933), Expect = e-121
 Identities = 136/264 (51%), Positives = 181/264 (68%), Gaps = 7/264 (2%)

Query: 129 YKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLV 188
           Y D  HIGYDI GKKI K  + D L  FL ++DD   WR +YD+   ++V LT EE+ L+
Sbjct: 1   YDDYPHIGYDIDGKKIMKPAKGDALDKFLDSIDDPNFWRTVYDKQTGKDVNLTDEELELI 60

Query: 189 QRLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIR 248
           +R+ +G+ P  ++D Y  YV+WF  +  + PLSNAPEPKRRF+PSK E+KK+++ V AIR
Sbjct: 61  KRIQRGEIPDENYDPYEPYVEWFTSEVEIMPLSNAPEPKRRFVPSKHEAKKIMKLVHAIR 120

Query: 249 KGLIKFDEPK------EEEPKFYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSL 302
            G IK D+P       EE PKFY LW D+     K + + +IPAPK  LPGH ESYNP  
Sbjct: 121 MGWIKPDKPPKEKEEEEEYPKFYDLWADEDETETKFRIIMHIPAPKLPLPGHAESYNPPP 180

Query: 303 EYIPTQEELNSYQLMYEEDRPK-FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK 361
           EY+PT+EE   ++ +  EDR   F+P++F SLR VP Y N +K+ FERC+DLYL PR R+
Sbjct: 181 EYLPTEEEKKEWEELEPEDRKLNFLPQKFDSLRKVPGYTNFIKERFERCLDLYLAPRQRR 240

Query: 362 KRVNIDPETLKPKLPSRKDLKPYP 385
            ++NIDPE+L PKLPS KDL+P+P
Sbjct: 241 NKLNIDPESLLPKLPSPKDLRPFP 264

This N terminal domain is found in BOP1-like WD40 proteins. Length = 264

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  113 bits (284), Expect = 1e-27
 Identities = 73/318 (22%), Positives = 123/318 (38%), Gaps = 62/318 (19%)

Query: 394 GSTDGTVRIWEVESGRCLRVLE----IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL 449
           GS DGT+++W++E+G  LR L+        +   A        + + S  + + + +  L
Sbjct: 27  GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY----LASGSSDKTIRLWD--L 80

Query: 450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL 509
              E  R +                                  H   VSSV +   G  L
Sbjct: 81  ETGECVRTLTG--------------------------------HTSYVSSVAFSPDGRIL 108

Query: 510 STVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV-FHPT-RSIFFVSTKKNIRVYDL 567
           S+   +   + I +  +          + H   V+SV F P    +   S    I+++DL
Sbjct: 109 SS---SSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164

Query: 568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT 627
              + +  L     EV+S+A  P G+ L+  S +G +  +D+  + K    L+ H   + 
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS-TGKCLGTLRGHENGVN 223

Query: 628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH 687
           +VAF     L AS S+D T  V+      DL        ++ L GHT+S    V    + 
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVW------DLRTG---ECVQTLSGHTNS----VTSLAWS 270

Query: 688 PRQPWLFTAGADSVIRLY 705
           P    L +  AD  IR++
Sbjct: 271 PDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 55/215 (25%), Positives = 83/215 (38%), Gaps = 20/215 (9%)

Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV--FHPT 550
           H   V+ V +   G  L+T         I +  L      R   K H  PV  V      
Sbjct: 8   HTGGVTCVAFSPDGKLLAT---GSGDGTIKVWDLETGELLRT-LKGHTGPVRDVAASADG 63

Query: 551 RSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
             +   S+ K IR++DL     ++ L      VSS+A  P G  L   SR+  +  +D++
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
            + K    L+ H   + +VAF       AS S D T  ++      DL     +     L
Sbjct: 124 -TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW------DLRTGKCV---ATL 173

Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
            GHT      V    F P    L ++ +D  I+L+
Sbjct: 174 TGHTGE----VNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.4 bits (194), Expect = 2e-15
 Identities = 68/316 (21%), Positives = 121/316 (38%), Gaps = 46/316 (14%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
           GS+DGT+++W++++G               +   L +  V  +++               
Sbjct: 83  GSSDGTIKLWDLDNGE----------KLIKSLEGLHDSSVSKLAL--------------- 117

Query: 454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM 513
                 D   +   ++  D    +       KL      H + V+S+ +   G  L++  
Sbjct: 118 ---SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS 174

Query: 514 PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV-FHPTRSIFFVSTKKN--IRVYDLLKQ 570
               +  ++  +  K LS       H  PVSS+ F P   +   S   +  IR++DL   
Sbjct: 175 SLDGTIKLWDLRTGKPLS---TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231

Query: 571 RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVA 630
           +L++   +G  +    +  P G  L  GS +G +  +D+  SS   R L  H   + +VA
Sbjct: 232 KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA 291

Query: 631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ 690
           F     L AS S D T  ++         +   ++    L+GH       V    F P  
Sbjct: 292 FSPDGKLLASGSSDGTVRLWD-------LETGKLLSSLTLKGHEGP----VSSLSFSPDG 340

Query: 691 PWLFTAGA-DSVIRLY 705
             L + G+ D  IRL+
Sbjct: 341 SLLVSGGSDDGTIRLW 356

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.4 bits (176), Expect = 2e-13
 Identities = 60/276 (21%), Positives = 106/276 (38%), Gaps = 17/276 (6%)

Query: 389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEA-IQYVAWNPLPELPVLAVSVGQDVLILNT 447
            L    S DGT+++W++ +G+ L  L      +  +A++P   L + + S    + + + 
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 448 GLGNEEEQRR---VKDLLHVETP------TAPDDNMASIVSWLQHDKLDGIRLRHFKMVS 498
             G             ++   +P      +   D    +        L      H   V 
Sbjct: 229 STGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288

Query: 499 SVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV-FHPTRSIFFV- 556
           SV +   G  L++   + +         + KL   +  K H  PVSS+ F P  S+    
Sbjct: 289 SVAFSPDGKLLASG--SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346

Query: 557 -STKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP 615
            S    IR++DL   + +K LE     V S++  P G  +  GS +G +  +D   +   
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWD-LSTGSL 404

Query: 616 YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651
            R L  H   +T++ F       AS S D T  ++ 
Sbjct: 405 LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAF 631
           L + L+     V+ +A  P G  L  GS +G +  +D++ + +  R LK H   + +VA 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLKGHTGPVRDVAA 59

Query: 632 HRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP 691
                  AS S D T  ++      DL     +     L GHTS     V    F P   
Sbjct: 60  SADGTYLASGSSDKTIRLW------DLETGECVR---TLTGHTS----YVSSVAFSPDGR 106

Query: 692 WLFTAGADSVIRLY 705
            L ++  D  I+++
Sbjct: 107 ILSSSSRDKTIKVW 120

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.2 bits (113), Expect = 1e-05
 Identities = 47/252 (18%), Positives = 91/252 (36%), Gaps = 19/252 (7%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYV-AWNPLPELPVLAVSVGQDVLILNTGLGNE 452
           GS+DGT+R+W++ +G+ LR    G +   V +++P   L + + S    + + +    + 
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL-LASGSSDGTIRLWDLRSSSS 275

Query: 453 EEQRRVKDLLHVET----------PTAPDDNMASIVSWLQHDKLDGIRLR-HFKMVSSVE 501
             +        V +           +   D    +        L  + L+ H   VSS+ 
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335

Query: 502 WHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKN 561
           +   G  L +     +   I +  L      +       +   S     R +   ST   
Sbjct: 336 FSPDGSLLVSG--GSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT 393

Query: 562 IRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKL-CWFDMDLSSKPYRVLK 620
           +R++DL    L++ L+     V+S+   P G +L  GS +  +  W   DL +    V  
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW---DLKTSLKSVSF 450

Query: 621 CHPKDITNVAFH 632
                +      
Sbjct: 451 SPDGKVLASKSS 462

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 612 SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651
           S +  + LK H   +T+VAF       AS SDD T  ++ 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 614 KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651
           K  R LK H   +T+VAF     L AS SDD T  V+ 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 665 VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
             L  L+GHT      V    F P    L +   D  +R++
Sbjct: 2   KLLRTLKGHTGP----VTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 666 PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
            L+ L+GHT      V    F P   +L +   D  I+L+
Sbjct: 4   LLKTLKGHTGP----VTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	707
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	100.0
PF08145	260	BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR01295	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
PTZ00421	493	coronin; Provisional	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.91
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.91
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.89
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0289	506	consensus mRNA splicing factor [General function p	99.89
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.88
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.86
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG0639	705	consensus Transducin-like enhancer of split protei	99.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG0646	476	consensus WD40 repeat protein [General function pr	99.85
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.84
KOG0267	825	consensus Microtubule severing protein katanin p80	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG0267	825	consensus Microtubule severing protein katanin p80	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.83
KOG2096	420	consensus WD40 repeat protein [General function pr	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG1274	933	consensus WD40 repeat protein [General function pr	99.82
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.82
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.81
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.8
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.79
KOG1273	405	consensus WD40 repeat protein [General function pr	99.78
KOG2055	514	consensus WD40 repeat protein [General function pr	99.78
KOG4328	498	consensus WD40 protein [Function unknown]	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.76
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.76
KOG4328	498	consensus WD40 protein [Function unknown]	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.74
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG1963	792	consensus WD40 repeat protein [General function pr	99.71
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.7
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.7
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.69
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.68
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.67
COG2319	466	FOG: WD40 repeat [General function prediction only	99.67
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.64
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.64
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.62
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.62
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.59
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.58
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.58
KOG1963	792	consensus WD40 repeat protein [General function pr	99.58
KOG1188	376	consensus WD40 repeat protein [General function pr	99.58
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.58
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.57
PRK11028	330	6-phosphogluconolactonase; Provisional	99.56
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.55
PRK04922	433	tolB translocation protein TolB; Provisional	99.55
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.54
KOG1334	559	consensus WD40 repeat protein [General function pr	99.54
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.53
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.52
PRK05137	435	tolB translocation protein TolB; Provisional	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
KOG0649	325	consensus WD40 repeat protein [General function pr	99.51
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.5
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.49
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.49
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.49
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.48
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.48
KOG0649	325	consensus WD40 repeat protein [General function pr	99.47
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.47
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.45
KOG2321	703	consensus WD40 repeat protein [General function pr	99.45
KOG1310	758	consensus WD40 repeat protein [General function pr	99.45
KOG4227	609	consensus WD40 repeat protein [General function pr	99.45
KOG2139	445	consensus WD40 repeat protein [General function pr	99.44
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.43
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.42
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.42
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.39
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.39
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
KOG2315	566	consensus Predicted translation initiation factor	99.38
KOG2315	566	consensus Predicted translation initiation factor	99.37
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.37
PRK00178	430	tolB translocation protein TolB; Provisional	99.36
KOG1334	559	consensus WD40 repeat protein [General function pr	99.36
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.35
PRK04792	448	tolB translocation protein TolB; Provisional	99.35
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.35
PRK01029	428	tolB translocation protein TolB; Provisional	99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.31
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.31
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.31
PRK04792	448	tolB translocation protein TolB; Provisional	99.3
PRK01029	428	tolB translocation protein TolB; Provisional	99.3
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.29
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.24
KOG1310	758	consensus WD40 repeat protein [General function pr	99.22
KOG4547	541	consensus WD40 repeat-containing protein [General	99.22
KOG2321	703	consensus WD40 repeat protein [General function pr	99.22
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.19
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.18
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.1
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.1
KOG4547	541	consensus WD40 repeat-containing protein [General	99.1
KOG2314	698	consensus Translation initiation factor 3, subunit	99.09
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.07
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.03
COG4946	668	Uncharacterized protein related to the periplasmic	99.03
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.01
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.0
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.0
PRK04043	419	tolB translocation protein TolB; Provisional	98.99
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.96
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.96
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.94
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.92
KOG2314	698	consensus Translation initiation factor 3, subunit	98.92
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.9
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.89
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.87
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.84
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.83
COG4946	668	Uncharacterized protein related to the periplasmic	98.78
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.77
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.72
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.7
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.69
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.68
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.65
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.62
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.58
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.58
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.58
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.57
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.54
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.53
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.52
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.52
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.5
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.49
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.46
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.46
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.45
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.45
KOG2695	425	consensus WD40 repeat protein [General function pr	98.41
KOG2695	425	consensus WD40 repeat protein [General function pr	98.41
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.38
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.33
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.32
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.31
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.3
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.28
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.27
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.26
PRK02888	635	nitrous-oxide reductase; Validated	98.25
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.23
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.23
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.18
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.11
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.11
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.11
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.1
PRK02888	635	nitrous-oxide reductase; Validated	98.1
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.02
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.99
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.98
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.97
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.94
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.93
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.88
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.83
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.82
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.79
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.78
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.77
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.68
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.59
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.57
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.53
KOG3621	726	consensus WD40 repeat-containing protein [General	97.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.5
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.5
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.5
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.48
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.48
COG3391	381	Uncharacterized conserved protein [Function unknow	97.48
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.46
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.46
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.44
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.43
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.36
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.36
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.32
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.3
COG3391	381	Uncharacterized conserved protein [Function unknow	97.28
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.23
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.22
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.2
KOG3621	726	consensus WD40 repeat-containing protein [General	97.18
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.17
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.17
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.11
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.11
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.1
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.06
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.94
PRK13616	591	lipoprotein LpqB; Provisional	96.94
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.94
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.91
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.9
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.87
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.85
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.84
PRK13616	591	lipoprotein LpqB; Provisional	96.79
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.62
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.49
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.48
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.36
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.36
KOG2395	644	consensus Protein involved in vacuole import and d	96.3
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.26
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.05
KOG2444	238	consensus WD40 repeat protein [General function pr	96.0
KOG2395	644	consensus Protein involved in vacuole import and d	95.98
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.91
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.89
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.81
PRK10115	686	protease 2; Provisional	95.75
PRK10115	686	protease 2; Provisional	95.71
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.63
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.58
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.51
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.45
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.43
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.25
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.07
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.03
PRK13684	334	Ycf48-like protein; Provisional	95.02
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.74
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.62
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.57
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.56
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.55
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.45
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.37
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.22
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.2
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.07
PF08145	260	BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR01295	94.02
PRK13684	334	Ycf48-like protein; Provisional	93.9
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.82
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.81
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.76
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.74
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.7
COG5276	370	Uncharacterized conserved protein [Function unknow	93.7
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.47
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.31
PHA02713	557	hypothetical protein; Provisional	93.27
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.17
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.13
PHA02713	557	hypothetical protein; Provisional	93.05
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.75
KOG2444	238	consensus WD40 repeat protein [General function pr	92.72
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.69
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.66
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.58
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.3
COG5167	776	VID27 Protein involved in vacuole import and degra	92.01
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.85
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.61
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.22
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	90.98
PHA03098	534	kelch-like protein; Provisional	90.78
KOG2247	615	consensus WD40 repeat-containing protein [General	90.73
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.71
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.63
COG5167	776	VID27 Protein involved in vacuole import and degra	90.47
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.1
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.06
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.25
COG4590	733	ABC-type uncharacterized transport system, permeas	88.88
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	88.61
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.48
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	88.28
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.0
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.64
COG5276	370	Uncharacterized conserved protein [Function unknow	87.36
KOG2377	657	consensus Uncharacterized conserved protein [Funct	86.93
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	86.09
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.01
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.81
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.2
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.1
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.07
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.87
KOG2247	615	consensus WD40 repeat-containing protein [General	84.79
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	83.91
PHA02790	480	Kelch-like protein; Provisional	83.55
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	83.4
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.27
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.02
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	82.66
PHA03098	534	kelch-like protein; Provisional	82.6
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	82.32
PRK05560	805	DNA gyrase subunit A; Validated	81.88
KOG3616	1636	consensus Selective LIM binding factor [Transcript	81.55

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.8e-146  Score=1149.81  Aligned_cols=594  Identities=55%  Similarity=0.971  Sum_probs=556.0

Q ss_pred             CCccccCCCCccccccccccCCCCcccccCCCcEeccCCChhHHHHHHHcCCCCCCceEeeecCCCeEeecCHHHHHHHH
Q 005235          110 SSEDEVAPRNTIGDVPLEWYKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQ  189 (707)
Q Consensus       110 ~~~~~~~~~n~~g~~p~~~y~~~~h~gyd~~g~~i~k~~~~~~~~~~l~~~~~~~~w~~~~d~~~~~~~~lt~~~~~~i~  189 (707)
                      +|+||++.|||||||||+||||++|||||++||||+||+++++||+||++||||++||+|+|++||++|+||+||++||+
T Consensus       112 ~sSde~d~rntvgnipl~wYdd~~hIgYD~~gkkI~kp~k~~~ld~fl~~iedp~~Wr~v~Dk~tG~dv~LTkEev~lI~  191 (733)
T KOG0650|consen  112 DSSDEEDTRNTVGNIPLKWYDDEKHIGYDIDGKKITKPAKGDELDSFLAKIEDPDYWRKVKDKMTGKDVNLTKEEVKLIR  191 (733)
T ss_pred             cCcchhhhhcccCCcccccccccccccccccccEecCCCccchHHHHHHhhcCcchhccccccCCCceeeecHHHHHHHH
Confidence            34566679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCccccccccCCcccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHcCccccC-CCCCccccccccc
Q 005235          190 RLLKGKAPHTDFDQYADYVDWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFD-EPKEEEPKFYLLW  268 (707)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~k~~f~psk~e~~~v~klv~~ir~g~~~~~-~~~~~~~~~~~lW  268 (707)
                      ||++|++|+.+||||+||++|||+++|+|||+++|||||||+|||+|+++|++||+|||+|||++. +++++...+||||
T Consensus       192 ri~~g~~pd~d~dpYeP~~d~Fs~~~~~~Pi~~~PepKrrFiPSk~Eakrv~rmv~Air~Gwik~~~r~kee~~~~ydLW  271 (733)
T KOG0650|consen  192 RIARGEIPDPDFDPYEPLVDWFSRDVEIHPISNRPEPKRRFIPSKTEAKRVSRMVHAIRKGWIKTDPREKEENYKFYDLW  271 (733)
T ss_pred             HHHcccCCCCCCCccchHHHHhcccccccccccCCCcccccCCcHHHHHHHHHHHHHHHhccccCCccccccCcccccee
Confidence            999999999999999999999999999999999999999999999999999999999999999984 5555556799999


Q ss_pred             cCCCchHHhhccccCCCCCCCCCCCCccccCCCCCccCChhhhhhhhccCcCCCCc-ccCcccceecccccccccccccc
Q 005235          269 GDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPK-FIPRRFTSLRSVPAYENAVKDSF  347 (707)
Q Consensus       269 ~~~~~~~~~~~~~~~~papk~~lpgh~~synP~ge~L~s~~~~~~W~~~~~~dr~~-~lp~~~~~lr~v~~~~~~i~e~f  347 (707)
                      ++++......++.+++||||+.||||++|||||.|||+++++.+.|+...+++|++ |+|++|.+||.||+|.++|+++|
T Consensus       272 ~~dd~~e~l~r~~~~~paPKl~lP~heESYNPP~EYL~~~eE~~~we~~E~~~R~l~F~P~ky~sLR~VPaY~r~irErF  351 (733)
T KOG0650|consen  272 ADDDTGEQLDRHLDLVPAPKLALPGHEESYNPPEEYLFDEEEKKAWEEAEPEDRKLNFIPQKYKSLRKVPAYERSIRERF  351 (733)
T ss_pred             ccCCchhhhhcccccCCccccCCCCcccccCCchhhccCHHHhhhhhhccccccccccccccchhhhcchhHHHHHHHHH
Confidence            99888777888899999999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             eeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEE--------------------EEEeCCCcEEEEeCCC
Q 005235          348 ERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLE--------------------YKGSTDGTVRIWEVES  407 (707)
Q Consensus       348 ~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l--------------------~sgs~DgtVrIWd~~t  407 (707)
                      +||||||+|||++++++||||++|+|+||+|++|+|||+.+.++                    ++||.||+||||++.|
T Consensus       352 eRcLDLYL~PR~rK~rlniDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T  431 (733)
T KOG0650|consen  352 ERCLDLYLAPRVRKMRLNIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT  431 (733)
T ss_pred             HHhHHhhhCcccccceecCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec
Confidence            99999999999999999999999999999999999999986554                    4679999999999999


Q ss_pred             CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCc--
Q 005235          408 GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDK--  485 (707)
Q Consensus       408 g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~--  485 (707)
                      |+|++++...+.|.||+|+|.++..+++++.+..+.|.++.-|.....+.+...+....  .....++++..|.....  
T Consensus       432 gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~--~~~~p~~~~~~W~~~~~~e  509 (733)
T KOG0650|consen  432 GRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAP--NESEPDAAVVTWSRASLDE  509 (733)
T ss_pred             ceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCC--CccCCcccceeechhhhhh
Confidence            99999999999999999999998899999999999999988776555544444433321  11234568899987622  


Q ss_pred             ---cceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCCe
Q 005235          486 ---LDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKKN  561 (707)
Q Consensus       486 ---~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg~  561 (707)
                         .+++.+.|...|.+|.||..|+||++++.++..+.|.||+++++..+ .+| ..++.|+++.|||..++|++|+++.
T Consensus       510 ~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaTq~~  588 (733)
T KOG0650|consen  510 LEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVATQRS  588 (733)
T ss_pred             hccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEeccc
Confidence               23568899999999999999999999999998999999999999999 999 9999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE
Q 005235          562 IRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC  641 (707)
Q Consensus       562 I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg  641 (707)
                      |+|||+..+.+++++..+..+|++|++||.|++|++|++|++++|||++.+.+|+++++.|..+|++|+||+..++||+|
T Consensus       589 vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~  668 (733)
T KOG0650|consen  589 VRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG  668 (733)
T ss_pred             eEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      ++||++.|||+++|+|+.++++++|++.|+||...+.+||+++.|||.++||+|+|+||+|+||.
T Consensus       669 sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  669 SDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             cCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            99999999999999999999999999999999998899999999999999999999999999995

>PF08145 BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR012953 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=100.00  E-value=2.5e-91  Score=687.31  Aligned_cols=257  Identities=63%  Similarity=1.108  Sum_probs=249.8

Q ss_pred             cCCCCcccccCCCcEeccCCChhHHHHHHHcCCCCCCceEeeecCCCeEeecCHHHHHHHHHHHcCCCCCCCCCCCcccc
Q 005235          129 YKDEKHIGYDISGKKITKKERQDKLASFLANVDDSKSWRKIYDEYNDEEVELTKEEIRLVQRLLKGKAPHTDFDQYADYV  208 (707)
Q Consensus       129 y~~~~h~gyd~~g~~i~k~~~~~~~~~~l~~~~~~~~w~~~~d~~~~~~~~lt~~~~~~i~~~~~~~~~~~~~~~~~~~~  208 (707)
                      ||||+|||||++|+||||++++|+||+||+++|||++||||||++||+.|+||++||+||+|||+|++|+.+||||+|||
T Consensus         1 Ydd~~HIGYDi~GkkI~K~~~~d~LD~fL~~~ddp~~Wrtv~D~~~g~~v~Lt~eel~lI~ri~~g~~p~~~~dpy~~~v   80 (260)
T PF08145_consen    1 YDDYPHIGYDIDGKKIMKPAKGDALDKFLDSMDDPNYWRTVYDKKNGREVVLTDEELELIRRIQKGEFPDPGYDPYEPYV   80 (260)
T ss_pred             CCCCCccCcCCCCCEecCCCchhHHHHHHHhccCccCCceeEcCCCCceeeeCHHHHHHHHHHHcCCCCCCCCCCCCCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHcCccccCCCCCc--cccccccccCCCchHHhhccccCCCC
Q 005235          209 DWFKYDDALHPLSNAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEPKEE--EPKFYLLWGDDSSAAEKAKHLAYIPA  286 (707)
Q Consensus       209 ~~~~~~~~~~p~~~~~~~k~~f~psk~e~~~v~klv~~ir~g~~~~~~~~~~--~~~~~~lW~~~~~~~~~~~~~~~~pa  286 (707)
                      ||||+++++|||+++|||||||+|||||++||+|||+|||+|||++.+++++  ++.+||||++++....+.+++|+|||
T Consensus        81 d~ft~~~~~~Pls~~pepKrrFiPSK~E~kkV~Klv~aIr~G~i~~~~~~~~~~~~~~ydlW~d~~~~~~~~~~~~~ipA  160 (260)
T PF08145_consen   81 DWFTSEDEIHPLSNAPEPKRRFIPSKWEAKKVMKLVRAIRMGWIKPDKPKEEEEEPEFYDLWADDDDDEEKRRHPMHIPA  160 (260)
T ss_pred             cccCCcccccccCCCCCCCcccCCCHHHHHHHHHHHHHHHhCcCCccccccccccccccccccCcCccccccCCCCCCCC
Confidence            9999999999999999999999999999999999999999999998877744  78999999998555556788999999


Q ss_pred             CCCCCCCCccccCCCCCccCChhhhhhhhccCcCCCCc-ccCcccceecccccccccccccceeeeeEEEcCccccceee
Q 005235          287 PKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPK-FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVN  365 (707)
Q Consensus       287 pk~~lpgh~~synP~ge~L~s~~~~~~W~~~~~~dr~~-~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~ln  365 (707)
                      ||++||||++|||||.|||+++++++.|+++++++|.. |+|++|.+||.||+|.++|+|+|+||||||||||++++++|
T Consensus       161 PK~~LPgh~eSYNPP~EYL~~~~E~~~w~~~~pedR~~~fiP~k~~sLR~Vp~Y~~~i~ErFeRCLDLYLcPR~~k~rln  240 (260)
T PF08145_consen  161 PKLKLPGHAESYNPPPEYLPTEEEKKEWEEMDPEDRKKNFIPQKFDSLRKVPAYENFIKERFERCLDLYLCPRVRKKRLN  240 (260)
T ss_pred             CCCCCCCCccccCCchHhccCHHHHHHHHhcCchhccccccchhhhhhhccchHHHHHHHHHHHhhhhhcCcHhhcccCC
Confidence            99999999999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCcccC
Q 005235          366 IDPETLKPKLPSRKDLKPYP  385 (707)
Q Consensus       366 idp~~llp~lp~~~~l~pfp  385 (707)
                      |||++|||+||+|++|+|||
T Consensus       241 idPesLlPkLP~p~dLrPFP  260 (260)
T PF08145_consen  241 IDPESLLPKLPSPKDLRPFP  260 (260)
T ss_pred             CCHHHhCCCCcChHhcCCCC
Confidence            99999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This N-terminal domain is found in BOP1-like WD40 proteins. Bop1 is a nucleolar protein involved in rRNA processing, thereby controlling the cell cycle []. It is required for the maturation of the 25S and 5.8S ribosomal RNAs. It may serve as an essential factor in ribosome formation that coordinates processing of the spacer regions in pre-rRNA. The Pes1-Bop1 complex has several components: BOP1, GRWD1, PES1, ORC6L, and RPL3 and is involved in ribosome biogenesis and altered chromosome segregation. The overexpression of BOP1 increases the percentage of multipolar spindles in human cells. Deregulation of the BOP1 pathway may contribute to colorectal tumourigenesis in humans []. Elevated levels of Bop1 induces Bop1/WDR12 and Bop1/Pes1 subcomplexes and the assembly and integrity of the PeBoW complex is highly sensitive to changes in Bop1 protein levels []. Nop7p-Erb1p-Ytm1p, found in yeast, is potentially the homologous complex of Pes1-Bop1-WDR12 as it is involved in the control of ribosome biogenesis and S phase entry. The integrity of the PeBoW complex is required for ribosome biogenesis and cell proliferation in mammalian cells []. In Giardia, the species specific cytoskeleton protein, beta-giardin, interacts with Bop1 []. ; GO: 0006364 rRNA processing, 0005634 nucleus

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.3e-44  Score=359.11  Aligned_cols=333  Identities=17%  Similarity=0.211  Sum_probs=294.4

Q ss_pred             ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEe
Q 005235          325 FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWE  404 (707)
Q Consensus       325 ~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd  404 (707)
                      |-||..-.+|.|-.....+.+|-+.++.+.|+|.+                             ..+++||.|.|+|+||
T Consensus        93 yqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g-----------------------------~~l~tGsGD~TvR~WD  143 (480)
T KOG0271|consen   93 YQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTG-----------------------------SRLVTGSGDTTVRLWD  143 (480)
T ss_pred             eccchhhcccccceeccccCCCCCcEEEEEecCCC-----------------------------ceEEecCCCceEEeec
Confidence            66766666777767777777888888998888765                             4899999999999999


Q ss_pred             CCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc---hhcccccceeeeccc----------ccc
Q 005235          405 VESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE---EEQRRVKDLLHVETP----------TAP  470 (707)
Q Consensus       405 ~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~---~~~~~~~~v~~~~~~----------~~~  470 (707)
                      +.|...+.+.++ ...|.||+|+||| ..|++++.+|+|++||+.++.+   .+.+|...+.+++|.          +++
T Consensus       144 ~~TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las  222 (480)
T KOG0271|consen  144 LDTETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS  222 (480)
T ss_pred             cCCCCcceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceec
Confidence            999999999888 8999999999999 4899999999999999999875   678899999999886          788


Q ss_pred             cCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe
Q 005235          471 DDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH  548 (707)
Q Consensus       471 ~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs  548 (707)
                      ++.||.+++|+...+... .+.+|+.+|+||.|-.+ .++++++.|+   +|++|+...+.+. ..+ +|...|+.++.+
T Consensus       223 ~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~Dr---tIkvw~a~dG~~~-r~lkGHahwvN~lals  297 (480)
T KOG0271|consen  223 SSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDR---TIKVWRALDGKLC-RELKGHAHWVNHLALS  297 (480)
T ss_pred             ccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCc---eEEEEEccchhHH-Hhhcccchheeeeecc
Confidence            889999999999876544 47899999999999754 4899999988   9999999998888 888 898899988766


Q ss_pred             -----------CCCC-------------------------EEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcC
Q 005235          549 -----------PTRS-------------------------IFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHP  590 (707)
Q Consensus       549 -----------pd~~-------------------------~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~sp  590 (707)
                                 |.+.                         .|++|+ |.++.+|+... .+++..+.+|..-|+.+.|||
T Consensus       298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP  377 (480)
T KOG0271|consen  298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP  377 (480)
T ss_pred             chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence                       3333                         388888 79999999765 468889999999999999999


Q ss_pred             CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe
Q 005235          591 AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL  670 (707)
Q Consensus       591 dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l  670 (707)
                      |++++|++|.|..|++||.+++ +.+.+|++|-++|..|+|+.|.++|+|||.|.+++||++      .+..+   ...|
T Consensus       378 d~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V------~tkKl---~~DL  447 (480)
T KOG0271|consen  378 DGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV------RTKKL---KQDL  447 (480)
T ss_pred             CccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe------eeeee---cccC
Confidence            9999999999999999999998 788999999999999999999999999999999999954      44444   5678


Q ss_pred             eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       671 ~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .||...    |.++.|+|||..+++||.|..++||.
T Consensus       448 pGh~DE----Vf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  448 PGHADE----VFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCCCce----EEEEEecCCCceeecCCCceEEEeec
Confidence            999998    99999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.6e-41  Score=342.58  Aligned_cols=275  Identities=21%  Similarity=0.268  Sum_probs=251.0

Q ss_pred             CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCchhccc
Q 005235          380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNEEEQRR  457 (707)
Q Consensus       380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~~~~~~  457 (707)
                      ....|+.++..++|||-+|.++||++.++..+.+|.+ .+.|.++.|+|. .+..+++++.||++++|++.+..+     
T Consensus       179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~-----  253 (459)
T KOG0272|consen  179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP-----  253 (459)
T ss_pred             eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc-----
Confidence            3345888999999999999999999999999999988 899999999998 346899999999999999766422     


Q ss_pred             ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-
Q 005235          458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-  536 (707)
Q Consensus       458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-  536 (707)
                                                   +..+.+|...|..++|||+|++|+|+|.|.   +.++||+.++... ... 
T Consensus       254 -----------------------------l~~l~gH~~RVs~VafHPsG~~L~TasfD~---tWRlWD~~tk~El-L~QE  300 (459)
T KOG0272|consen  254 -----------------------------LQDLEGHLARVSRVAFHPSGKFLGTASFDS---TWRLWDLETKSEL-LLQE  300 (459)
T ss_pred             -----------------------------hhhhhcchhhheeeeecCCCceeeeccccc---chhhcccccchhh-Hhhc
Confidence                                         224668999999999999999999999998   9999999999876 445 


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235          537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP  615 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~  615 (707)
                      +|...|.+++|+|+|.++++|+ |..-||||+++++++..|.+|...|.+|+|+|+|-+||+||.|++++|||++.. .+
T Consensus       301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~  379 (459)
T KOG0272|consen  301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SE  379 (459)
T ss_pred             ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-cc
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999976 67


Q ss_pred             eEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235          616 YRVLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF  694 (707)
Q Consensus       616 ~~~l~~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~  694 (707)
                      +.++.+|..-|+.|.|+| .|.+|+|||.|++++||...         ...|++.|.||.+.    |.+++.+|++.+|+
T Consensus       380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~---------~~~~~ksLaGHe~k----V~s~Dis~d~~~i~  446 (459)
T KOG0272|consen  380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR---------TWSPLKSLAGHEGK----VISLDISPDSQAIA  446 (459)
T ss_pred             ceecccccchhhheEecccCCeEEEEcccCcceeeecCC---------CcccchhhcCCccc----eEEEEeccCCceEE
Confidence            889999999999999999 78899999999999999433         33469999999998    99999999999999


Q ss_pred             EEeCCCcEEEEe
Q 005235          695 TAGADSVIRLYC  706 (707)
Q Consensus       695 s~g~Dg~IrlWd  706 (707)
                      |++.|.+|++|.
T Consensus       447 t~s~DRT~KLW~  458 (459)
T KOG0272|consen  447 TSSFDRTIKLWR  458 (459)
T ss_pred             EeccCceeeecc
Confidence            999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2e-37  Score=297.88  Aligned_cols=271  Identities=21%  Similarity=0.316  Sum_probs=240.4

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      ..-+|+++|.|.|||+|.+.||.|.+++++ ++.|+.+...|++  ..++++....|++||+.++.+.            
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk--~~LAaa~~qhvRlyD~~S~np~------------   74 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDK--KDLAAAGNQHVRLYDLNSNNPN------------   74 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCc--chhhhccCCeeEEEEccCCCCC------------
Confidence            345899999999999999999999999999 8999999999999  6888888899999999876432            


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEE
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSS  545 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v  545 (707)
                                .          ...+.+|...|++|.|..+|+++++|+.||   +++|||++...++ +.|.+.++|+++
T Consensus        75 ----------P----------v~t~e~h~kNVtaVgF~~dgrWMyTgseDg---t~kIWdlR~~~~q-R~~~~~spVn~v  130 (311)
T KOG0315|consen   75 ----------P----------VATFEGHTKNVTAVGFQCDGRWMYTGSEDG---TVKIWDLRSLSCQ-RNYQHNSPVNTV  130 (311)
T ss_pred             ----------c----------eeEEeccCCceEEEEEeecCeEEEecCCCc---eEEEEeccCcccc-hhccCCCCcceE
Confidence                      1          123568999999999999999999999999   9999999998887 888888999999


Q ss_pred             EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-----cceEE
Q 005235          546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG-LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-----KPYRV  618 (707)
Q Consensus       546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~-~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-----~~~~~  618 (707)
                      ..||+...|+++. +|.|++||+....+...+... ...|.++++.|+|..|+.+...|++++|++-...     .|+..
T Consensus       131 vlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k  210 (311)
T KOG0315|consen  131 VLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK  210 (311)
T ss_pred             EecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh
Confidence            9999999999999 799999999988777766543 3569999999999999999999999999986532     57788


Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          619 LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       619 l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                      ++.|.+-|..+.|||++++||+||.|.+++||+..      ..  +..-..+.||...    |.+++||.||.||+||+.
T Consensus       211 ~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~------~~--~kle~~l~gh~rW----vWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  211 FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD------DF--FKLELVLTGHQRW----VWDCAFSADGEYLVTASS  278 (311)
T ss_pred             eecccceEEEEEECCCCcEEEeecCCceEEEEecC------Cc--eeeEEEeecCCce----EEeeeeccCccEEEecCC
Confidence            99999999999999999999999999999999654      22  2235688999887    999999999999999999


Q ss_pred             CCcEEEEeC
Q 005235          699 DSVIRLYCH  707 (707)
Q Consensus       699 Dg~IrlWdl  707 (707)
                      |+++++|++
T Consensus       279 d~~~rlW~~  287 (311)
T KOG0315|consen  279 DHTARLWDL  287 (311)
T ss_pred             CCceeeccc
Confidence            999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-37  Score=314.95  Aligned_cols=280  Identities=18%  Similarity=0.250  Sum_probs=250.2

Q ss_pred             eEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEE
Q 005235          409 RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSW  480 (707)
Q Consensus       409 ~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW  480 (707)
                      +|-..+.+ .++|.|++|+|+| ..|++++.|.++++||+.+..+  ...+|..-+++++++     +++|+.+|+|++|
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            45555665 8899999999999 5899999999999999988765  677899999999998     9999999999999


Q ss_pred             ecCCccce--EEeccCCCeEEEEEcC-----CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC
Q 005235          481 LQHDKLDG--IRLRHFKMVSSVEWHR-----RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS  552 (707)
Q Consensus       481 ~~~~~~~~--~~~~h~~~V~~v~~sp-----~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~  552 (707)
                      +...+...  .+.+|...|++++|.|     .+.+||+++.||   .|+|||+..+.++ ..+ +|..+|+|+.|-.+| 
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg---~vrIWd~~~~~~~-~~lsgHT~~VTCvrwGG~g-  259 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG---SVRIWDTKLGTCV-RTLSGHTASVTCVRWGGEG-  259 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC---CEEEEEccCceEE-EEeccCccceEEEEEcCCc-
Confidence            98766543  3889999999999976     567999999999   9999999999998 777 999999999998665 


Q ss_pred             EEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEc-----------CCC-------------------------CEE
Q 005235          553 IFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIH-----------PAG-------------------------DNL  595 (707)
Q Consensus       553 ~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~s-----------pdg-------------------------~~L  595 (707)
                      +|++++ |++|++|+...|.+...|.+|..+|+.|+++           |.|                         ..|
T Consensus       260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl  339 (480)
T KOG0271|consen  260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL  339 (480)
T ss_pred             eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence            788888 9999999999999999999999999999876           333                         359


Q ss_pred             EEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235          596 IVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS  675 (707)
Q Consensus       596 ~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~  675 (707)
                      ++||.|.++.+|+.....+|+..+.+|..-|+.|.||||++++||+|-|.+|++|+++      ++..   +..|+||-.
T Consensus       340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~------tGk~---lasfRGHv~  410 (480)
T KOG0271|consen  340 VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR------TGKF---LASFRGHVA  410 (480)
T ss_pred             EEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC------Ccch---hhhhhhccc
Confidence            9999999999999988878999999999999999999999999999999999999654      3433   789999999


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       676 ~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .    |..++|+.|.++|+||+.|.++++|++
T Consensus       411 ~----VYqvawsaDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  411 A----VYQVAWSADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             e----eEEEEeccCccEEEEcCCCceEEEEEe
Confidence            8    999999999999999999999999985

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.6e-35  Score=287.52  Aligned_cols=289  Identities=17%  Similarity=0.234  Sum_probs=252.2

Q ss_pred             ccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCc
Q 005235          341 NAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEA  419 (707)
Q Consensus       341 ~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~  419 (707)
                      +.+++|...++++.|+++.+                             .++++|.||.+.|||.-|...++.+.. ...
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr-----------------------------~ivSaSqDGklIvWDs~TtnK~haipl~s~W   99 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSR-----------------------------RIVSASQDGKLIVWDSFTTNKVHAIPLPSSW   99 (343)
T ss_pred             EEecccccceeeeEecCCcC-----------------------------eEEeeccCCeEEEEEcccccceeEEecCcee
Confidence            45677777779999998765                             899999999999999999999999988 789


Q ss_pred             EEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEE
Q 005235          420 IQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS  499 (707)
Q Consensus       420 V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~  499 (707)
                      |..++|+|.|+ .+++++.|+...||++.+.+.                     ++.+.+       ...+.+|.+.+.|
T Consensus       100 VMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~---------------------~g~~~v-------~r~l~gHtgylSc  150 (343)
T KOG0286|consen  100 VMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDA---------------------EGNVRV-------SRELAGHTGYLSC  150 (343)
T ss_pred             EEEEEECCCCC-eEEecCcCceeEEEecccccc---------------------ccccee-------eeeecCccceeEE
Confidence            99999999994 677778899999999875421                     111111       1236799999999


Q ss_pred             EEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEECCCCeEEEEE
Q 005235          500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHP-TRSIFFVST-KKNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       500 v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwDl~~~~~~~~l  576 (707)
                      +.|-. ...|+|++.|.   ++.+||+.+++.. ..| +|.+.|.++.++| +++.|++|+ |++.+|||++.+.++++|
T Consensus       151 C~f~d-D~~ilT~SGD~---TCalWDie~g~~~-~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF  225 (343)
T KOG0286|consen  151 CRFLD-DNHILTGSGDM---TCALWDIETGQQT-QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF  225 (343)
T ss_pred             EEEcC-CCceEecCCCc---eEEEEEcccceEE-EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence            99987 56788999888   9999999999998 899 9999999999999 899999988 999999999999999999


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235          577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--PKDITNVAFHRSYPLFASCSDDCTAYVFHGMV  654 (707)
Q Consensus       577 ~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~  654 (707)
                      .+|...|+++.|+|+|.-+++||.|+++++||++.. +.+..+...  ..+|++|+||..|++|.+|..|.++.|||   
T Consensus       226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD---  301 (343)
T KOG0286|consen  226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD---  301 (343)
T ss_pred             cccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee---
Confidence            999999999999999999999999999999999976 556666522  35799999999999999999999999995   


Q ss_pred             ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                         ......   +..|.||.+.    |.++..+|||.-|+||+.|.++|||.
T Consensus       302 ---tlk~e~---vg~L~GHeNR----vScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  302 ---TLKGER---VGVLAGHENR----VSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ---ccccce---EEEeeccCCe----eEEEEECCCCcEEEecchhHheeecC
Confidence               444443   7889999998    99999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-34  Score=296.82  Aligned_cols=237  Identities=21%  Similarity=0.210  Sum_probs=216.7

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ..+|..+.|+++++ .|++++.+|.++||+.....                                  ..+.+.+|...
T Consensus       175 ~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~----------------------------------~~~~l~gH~~~  219 (459)
T KOG0272|consen  175 TRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCN----------------------------------LLQTLRGHTSR  219 (459)
T ss_pred             CCcceeeEeecCCC-eEEEeecCCceeEeecCCcc----------------------------------eeEEEeccccc
Confidence            56889999999994 89999999999999976642                                  22357799999


Q ss_pred             eEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeE
Q 005235          497 VSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRL  572 (707)
Q Consensus       497 V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~  572 (707)
                      |.++.|||.  +..+|+++.||   ++++|++++.... ..| +|...|..|+|||+|++|.+++ |.+-++||+.++..
T Consensus       220 v~~~~fhP~~~~~~lat~s~Dg---tvklw~~~~e~~l-~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E  295 (459)
T KOG0272|consen  220 VGAAVFHPVDSDLNLATASADG---TVKLWKLSQETPL-QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE  295 (459)
T ss_pred             eeeEEEccCCCccceeeeccCC---ceeeeccCCCcch-hhhhcchhhheeeeecCCCceeeecccccchhhcccccchh
Confidence            999999996  67999999999   9999999998777 788 9999999999999999999999 99999999999988


Q ss_pred             EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          573 IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       573 ~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +....+|...|.+++|+|||.++++|+.|..-+|||++++ +++-.|.+|...|.+|+|+|+|..|||||.|++++|||+
T Consensus       296 lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL  374 (459)
T KOG0272|consen  296 LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL  374 (459)
T ss_pred             hHhhcccccccceeEecCCCceeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence            8888999999999999999999999999999999999998 788999999999999999999999999999999999955


Q ss_pred             ccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEe
Q 005235          653 MVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP-RQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       653 ~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp-dg~~L~s~g~Dg~IrlWd  706 (707)
                      +      ....   +.++.+|.+-    |+.|.|+| .|.+|+|+|.|++++||.
T Consensus       375 R------~r~~---ly~ipAH~nl----VS~Vk~~p~~g~fL~TasyD~t~kiWs  416 (459)
T KOG0272|consen  375 R------MRSE---LYTIPAHSNL----VSQVKYSPQEGYFLVTASYDNTVKIWS  416 (459)
T ss_pred             c------cccc---ceecccccch----hhheEecccCCeEEEEcccCcceeeec
Confidence            4      4333   7889999998    99999999 788999999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.8e-33  Score=303.41  Aligned_cols=403  Identities=18%  Similarity=0.225  Sum_probs=301.3

Q ss_pred             ccccccCCCchHHhhccccCCCCCCCCCCCCccccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccc
Q 005235          264 FYLLWGDDSSAAEKAKHLAYIPAPKPKLPGHEESYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYEN  341 (707)
Q Consensus       264 ~~~lW~~~~~~~~~~~~~~~~papk~~lpgh~~synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~  341 (707)
                      ...+|.-+.+.-.+.++..| .+|.+.+     .|+|.|-.|++++.          |+.+  |.-....+...+.++..
T Consensus        85 llrv~~L~tgk~irswKa~H-e~Pvi~m-----a~~~~g~LlAtgga----------D~~v~VWdi~~~~~th~fkG~gG  148 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIRSWKAIH-EAPVITM-----AFDPTGTLLATGGA----------DGRVKVWDIKNGYCTHSFKGHGG  148 (775)
T ss_pred             eEEEEEcccchHhHhHhhcc-CCCeEEE-----EEcCCCceEEeccc----------cceEEEEEeeCCEEEEEecCCCc
Confidence            45677766665555555433 3344433     59999988888665          3333  43444555555555555


Q ss_pred             cccccceeeeeEEEcCcccccee------------ecC-CCCCCCCCCCCCCCc---ccCCCCcEEEEEeCCCcEEEEeC
Q 005235          342 AVKDSFERCMDLYLCPRVRKKRV------------NID-PETLKPKLPSRKDLK---PYPVACYLEYKGSTDGTVRIWEV  405 (707)
Q Consensus       342 ~i~e~f~rcldL~l~pr~~k~~l------------nid-p~~llp~lp~~~~l~---pfp~~~~~l~sgs~DgtVrIWd~  405 (707)
                      .|       ..+.|.|...+.-|            |+. ....+-.+..+..-.   .|..++..++++|.|..+.|||+
T Consensus       149 vV-------ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~  221 (775)
T KOG0319|consen  149 VV-------SSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL  221 (775)
T ss_pred             eE-------EEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence            54       44555554433111            111 111111111111111   35666788999999999999999


Q ss_pred             CCCeEEEEEecCCcEEEEEEccC-----CCccEEEEEeCCeEEEEECCCCCchh--------------------------
Q 005235          406 ESGRCLRVLEIGEAIQYVAWNPL-----PELPVLAVSVGQDVLILNTGLGNEEE--------------------------  454 (707)
Q Consensus       406 ~tg~~l~~l~~~~~V~~v~~spd-----g~~~lla~s~d~~V~lwd~~~~~~~~--------------------------  454 (707)
                      .+-++++++.....+.++.+-++     + ..++++|.+|.+++|+..++....                          
T Consensus       222 ~~~~~l~~lp~ye~~E~vv~l~~~~~~~~-~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vt  300 (775)
T KOG0319|consen  222 VQYKKLKTLPLYESLESVVRLREELGGKG-EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVT  300 (775)
T ss_pred             hhhhhhheechhhheeeEEEechhcCCcc-eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEE
Confidence            98888888888888888888887     4 379999999999999988763211                          


Q ss_pred             -------------------cccccceeeeccc------ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEE
Q 005235          455 -------------------QRRVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL  509 (707)
Q Consensus       455 -------------------~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~l  509 (707)
                                         .+.++.++++.|-      ++.+++.+.+++++..+....++.+|...|.+++...+|.+|
T Consensus       301 aeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~ll  380 (775)
T KOG0319|consen  301 AEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLL  380 (775)
T ss_pred             ccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEE
Confidence                               1112222222222      678888999999999888888899999999999977788999


Q ss_pred             EEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCe-----EEE----
Q 005235          510 STVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQR-----LIK----  574 (707)
Q Consensus       510 at~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~-----~~~----  574 (707)
                      +||+.|.   ++++|.++.+.+....+    +|.+.|.+++++..+. +|++++ |++|++|++...+     .+.    
T Consensus       381 at~sKD~---svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~  457 (775)
T KOG0319|consen  381 ATGSKDK---SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY  457 (775)
T ss_pred             EEecCCc---eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhH
Confidence            9999998   99999996655542222    8899999999977664 555566 9999999998621     111    


Q ss_pred             EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235          575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV  654 (707)
Q Consensus       575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~  654 (707)
                      +...|...|+|++++|+..+||+||.|++.+||++... ....+|.+|+..|++|.|+|..+++||||.|++|+||.+..
T Consensus       458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~  536 (775)
T KOG0319|consen  458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST  536 (775)
T ss_pred             HHHhhcccccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence            23468899999999999999999999999999999955 88999999999999999999999999999999999996554


Q ss_pred             ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ++         |+++|.||+..    |..+.|-.+|..|+||++||.|+||++
T Consensus       537 fS---------ClkT~eGH~~a----Vlra~F~~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  537 FS---------CLKTFEGHTSA----VLRASFIRNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             ce---------eeeeecCccce----eEeeeeeeCCcEEEeccCCCcEEEEec
Confidence            33         59999999998    999999999999999999999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-32  Score=295.07  Aligned_cols=359  Identities=15%  Similarity=0.240  Sum_probs=277.5

Q ss_pred             CCCCCccccCCCCCccCChh--hhhhhhccCcCCCCc-ccCcccceecccccccccccccceeeeeEEEcCccccceeec
Q 005235          290 KLPGHEESYNPSLEYIPTQE--ELNSYQLMYEEDRPK-FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNI  366 (707)
Q Consensus       290 ~lpgh~~synP~ge~L~s~~--~~~~W~~~~~~dr~~-~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lni  366 (707)
                      +-+-++-.|||+|.+++-+.  -++.|..  |..++- |.|        + ...+...++|+....+.|+-+.       
T Consensus        96 k~~v~~i~fSPng~~fav~~gn~lqiw~~--P~~~~~~~~p--------F-vl~r~~~g~fddi~si~Ws~DS-------  157 (893)
T KOG0291|consen   96 KRGVGAIKFSPNGKFFAVGCGNLLQIWHA--PGEIKNEFNP--------F-VLHRTYLGHFDDITSIDWSDDS-------  157 (893)
T ss_pred             cCccceEEECCCCcEEEEEecceeEEEec--CcchhcccCc--------c-eEeeeecCCccceeEEEeccCC-------
Confidence            33455667999999987633  3466662  222221 222        1 1112235677777888887555       


Q ss_pred             CCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEE
Q 005235          367 DPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVL  443 (707)
Q Consensus       367 dp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~  443 (707)
                                            .++++||.|.++|||.+...+-+..+..   .+.|.++-|..+. ..+++++.||.+.
T Consensus       158 ----------------------r~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~-~~l~tvskdG~l~  214 (893)
T KOG0291|consen  158 ----------------------RLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS-LDLYTVSKDGALF  214 (893)
T ss_pred             ----------------------ceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCc-ceEEEEecCceEE
Confidence                                  4999999999999999987665444433   7889999999888 4799999999999


Q ss_pred             EEECCCC-----------------------Cch-------------hcccccceeeecc-----------c---------
Q 005235          444 ILNTGLG-----------------------NEE-------------EQRRVKDLLHVET-----------P---------  467 (707)
Q Consensus       444 lwd~~~~-----------------------~~~-------------~~~~~~~v~~~~~-----------~---------  467 (707)
                      +|.....                       +..             +......+.+..|           +         
T Consensus       215 ~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lyel  294 (893)
T KOG0291|consen  215 VWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYEL  294 (893)
T ss_pred             EEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEec
Confidence            9987711                       000             0000012222221           1         


Q ss_pred             ---------------------------ccccC-CCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCc
Q 005235          468 ---------------------------TAPDD-NMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGES  518 (707)
Q Consensus       468 ---------------------------~~~~~-~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~  518 (707)
                                                 ++.++ .-|.+.+|+.....-.. ..+|...+++++++|||.++|||+.||  
T Consensus       295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg--  372 (893)
T KOG0291|consen  295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG--  372 (893)
T ss_pred             CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC--
Confidence                                       22222 33678888877554433 678999999999999999999999999  


Q ss_pred             cEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-CCeEEEEEcCCCCEE
Q 005235          519 RAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-KEVSSIAIHPAGDNL  595 (707)
Q Consensus       519 ~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~I~sl~~spdg~~L  595 (707)
                       .|+|||...+-|. .+| .|...|+.+.|+..++.+++++ ||+||.||+...+..+++.... ...+|++..|.|..+
T Consensus       373 -KVKvWn~~SgfC~-vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV  450 (893)
T KOG0291|consen  373 -KVKVWNTQSGFCF-VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV  450 (893)
T ss_pred             -cEEEEeccCceEE-EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence             9999999999999 999 9999999999999999999999 9999999999999999998754 237899999999999


Q ss_pred             EEEECCCc-EEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC
Q 005235          596 IVGSREGK-LCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT  674 (707)
Q Consensus       596 ~sGs~Dg~-I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~  674 (707)
                      ++|+.|.. |.+|+++++ +.+..|.+|.++|.+++|+|.+..|||+|.|.+|++|++-.     +...   +.++.-..
T Consensus       451 ~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~-----s~~~---vEtl~i~s  521 (893)
T KOG0291|consen  451 CAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS-----SSGT---VETLEIRS  521 (893)
T ss_pred             EeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec-----cCce---eeeEeecc
Confidence            99999875 999999998 89999999999999999999999999999999999996431     1112   44454433


Q ss_pred             CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          675 SSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       675 ~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .     |++++|+|+|+-|++++-||.|.+||.
T Consensus       522 d-----vl~vsfrPdG~elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  522 D-----VLAVSFRPDGKELAVATLDGQITFFDI  549 (893)
T ss_pred             c-----eeEEEEcCCCCeEEEEEecceEEEEEh
Confidence            3     999999999999999999999999984

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-32  Score=265.99  Aligned_cols=271  Identities=15%  Similarity=0.186  Sum_probs=223.9

Q ss_pred             cEEEEEeCCCcEEEEeCC-----CCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          389 YLEYKGSTDGTVRIWEVE-----SGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~-----tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      .++++++.|.++.+|++.     .|..++.+.+ ...|..++.+++|+ +.++++.|+++++||+.++..          
T Consensus        29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~~----------   97 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGES----------   97 (315)
T ss_pred             ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc-eEEeccccceEEEEEecCCcE----------
Confidence            589999999999999875     4778888888 78999999999994 899999999999999877632          


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c-cCC
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K-LHG  540 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~-~~~  540 (707)
                                              ...+.+|...|.+++|+++...+++|++|.   +|.+|+.-..... ... . +.+
T Consensus        98 ------------------------t~~f~GH~~dVlsva~s~dn~qivSGSrDk---Tiklwnt~g~ck~-t~~~~~~~~  149 (315)
T KOG0279|consen   98 ------------------------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDK---TIKLWNTLGVCKY-TIHEDSHRE  149 (315)
T ss_pred             ------------------------EEEEEecCCceEEEEecCCCceeecCCCcc---eeeeeeecccEEE-EEecCCCcC
Confidence                                    234779999999999999999999999988   9999999877654 222 3 388


Q ss_pred             CeEEEEEeCC--CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceE
Q 005235          541 LPVSSVFHPT--RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYR  617 (707)
Q Consensus       541 ~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~  617 (707)
                      .|.|+.|+|+  .++|++++ |++|++||+++.++...+.+|.+.++.+++||||...++|+.||.+.+||++.+ +.+.
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~ly  228 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLY  228 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeE
Confidence            9999999998  68888888 999999999999999999999999999999999999999999999999999987 5566


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceE-EeeCC-CCCCCCCeeEEEEcCCCCEEEE
Q 005235          618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLE-ILRGH-TSSNGRGVMDCKFHPRQPWLFT  695 (707)
Q Consensus       618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~-~l~gh-~~~~~~gV~~l~fspdg~~L~s  695 (707)
                      .+. |...|.+++|+|+...|+.+. +.+|+||+.      .+...+..++ .+.|. .....-...+++|+++|..|++
T Consensus       229 sl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl------~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~  300 (315)
T KOG0279|consen  229 SLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDL------ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA  300 (315)
T ss_pred             ecc-CCCeEeeEEecCCceeEeecc-CCceEEEec------cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence            664 788999999999988877765 445999954      3333321111 11122 1111122688999999999999


Q ss_pred             EeCCCcEEEEeC
Q 005235          696 AGADSVIRLYCH  707 (707)
Q Consensus       696 ~g~Dg~IrlWdl  707 (707)
                      |-.|+.|++|.+
T Consensus       301 g~td~~irv~qv  312 (315)
T KOG0279|consen  301 GYTDNVIRVWQV  312 (315)
T ss_pred             eecCCcEEEEEe
Confidence            999999999964

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.4e-33  Score=309.00  Aligned_cols=275  Identities=15%  Similarity=0.234  Sum_probs=228.2

Q ss_pred             EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc-
Q 005235          410 CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD-  487 (707)
Q Consensus       410 ~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~-  487 (707)
                      |+.++.. ...++|..|++++. .++++..|..|++|.+.............+..    +-+.+.+-.+...+...... 
T Consensus       370 c~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~----~d~~sad~~~~~~D~~~~~~~  444 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSN----IDTESADVDVDMLDDDSSGTS  444 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhcc----ccccccchhhhhccccCCcee
Confidence            4445544 67899999999993 56666688999999987431100000000000    00111222233333333322 


Q ss_pred             eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEE
Q 005235          488 GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVY  565 (707)
Q Consensus       488 ~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iw  565 (707)
                      ..+.+|.++|..+.|+|+.++|++++.|+   +|++|.+.+..+. ..+ +|..+|..|.|+|.|-+|++|+ |++-++|
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~---svRLWsl~t~s~~-V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW  520 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDS---SVRLWSLDTWSCL-VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW  520 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCc---ceeeeecccceeE-EEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence            34789999999999999999999999998   9999999999998 777 9999999999999999999998 9999999


Q ss_pred             ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235          566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg  645 (707)
                      ......+++.+.+|.+.|.|+.|||+..++++||.|.+|++||+.++ ..++.|.||.++|.+|+|||+|++||+|+.||
T Consensus       521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~  599 (707)
T KOG0263|consen  521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTALAFSPCGRYLASGDEDG  599 (707)
T ss_pred             ecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC-cEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence            99999999999999999999999999999999999999999999988 67999999999999999999999999999999


Q ss_pred             cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .|.||      |+..+.+   +..+.+|++.    |.++.|+.+|..||+||.|++|++||+
T Consensus       600 ~I~iW------Dl~~~~~---v~~l~~Ht~t----i~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  600 LIKIW------DLANGSL---VKQLKGHTGT----IYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             cEEEE------EcCCCcc---hhhhhcccCc----eeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            99999      5555544   7889999888    999999999999999999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-30  Score=273.56  Aligned_cols=308  Identities=16%  Similarity=0.159  Sum_probs=249.9

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh---c
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE---Q  455 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~---~  455 (707)
                      -|++++.++++.|.||+|.|||-.+|+.+..+..    .+.|.+|+|+||+ .++++++.|.+++|||+.+.....   .
T Consensus       197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~  275 (603)
T KOG0318|consen  197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPM  275 (603)
T ss_pred             EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeec
Confidence            4788899999999999999999999999999984    8999999999999 589999999999999998874311   1


Q ss_pred             c--cccceeeeccc---ccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235          456 R--RVKDLLHVETP---TAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK  529 (707)
Q Consensus       456 ~--~~~~v~~~~~~---~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~  529 (707)
                      +  ..++.+.+-+.   +.+.+.+|.+..++...... ..+.+|...|++++.++++++|++|+.||   .|.-|+..++
T Consensus       276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG---~I~~W~~~~g  352 (603)
T KOG0318|consen  276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG---HINSWDSGSG  352 (603)
T ss_pred             CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc---eEEEEecCCc
Confidence            1  12333333333   67778889999998876553 34789999999999999999999999999   9999999998


Q ss_pred             ceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe--------------EE-----------------EEE
Q 005235          530 LSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR--------------LI-----------------KKL  576 (707)
Q Consensus       530 ~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~--------------~~-----------------~~l  576 (707)
                      ..- ..+  .|...|.+++-+..+.++.++-|.++++.++..+.              .+                 ..|
T Consensus       353 ~~~-~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l  431 (603)
T KOG0318|consen  353 TSD-RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL  431 (603)
T ss_pred             ccc-ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence            875 443  78889999998887777777779999999773210              00                 011


Q ss_pred             eCCC--------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235          577 ETGL--------KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTA  647 (707)
Q Consensus       577 ~~~~--------~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I  647 (707)
                      +.+.        -..++++++|++..+++|+.|+.|+||.+.... .....+..|.++|++|+|||++.+||+|...+.|
T Consensus       432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv  511 (603)
T KOG0318|consen  432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV  511 (603)
T ss_pred             ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence            1111        225789999999999999999999999997543 3444667899999999999999999999999999


Q ss_pred             EEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          648 YVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       648 ~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .+|++.      +...  -...+.-|+..    |.+++|+|+...+|||+-|-+|.||++
T Consensus       512 v~yd~~------s~~~--~~~~w~FHtak----I~~~aWsP~n~~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  512 VLYDVA------SREV--KTNRWAFHTAK----INCVAWSPNNKLVATGSLDTNVIIYSV  559 (603)
T ss_pred             EEEEcc------cCce--ecceeeeeeee----EEEEEeCCCceEEEeccccceEEEEEc
Confidence            999654      3332  24556668887    999999999999999999999999985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-32  Score=273.43  Aligned_cols=268  Identities=20%  Similarity=0.223  Sum_probs=239.6

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      ...++++++.|++|++||..||++.+.+++ .+.|..|+|+..| ..+++++.|-.+.+||....-.             
T Consensus       119 ~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~~~-------------  184 (406)
T KOG0295|consen  119 SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTFFR-------------  184 (406)
T ss_pred             CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHHHH-------------
Confidence            345899999999999999999999999988 6779999999999 4677777777788888654211             


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEE
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVS  544 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~  544 (707)
                                          +.....+|...|.+++|-|.|+++++++.|.   +|+.|++.++-+. .+| +|...|..
T Consensus       185 --------------------c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~---tik~We~~tg~cv-~t~~~h~ewvr~  240 (406)
T KOG0295|consen  185 --------------------CIKSLIGHEHGVSSVFFLPLGDHILSCSRDN---TIKAWECDTGYCV-KTFPGHSEWVRM  240 (406)
T ss_pred             --------------------HHHHhcCcccceeeEEEEecCCeeeeccccc---ceeEEecccceeE-EeccCchHhEEE
Confidence                                1123668999999999999999999999988   9999999999999 999 99999999


Q ss_pred             EEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC---------------CCEEEEEECCCcEEEEE
Q 005235          545 SVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA---------------GDNLIVGSREGKLCWFD  608 (707)
Q Consensus       545 v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd---------------g~~L~sGs~Dg~I~vwD  608 (707)
                      +..+.||.++++++ |.+|++|-+.++++...+..|.-+|-|++|.|.               |.++.+||.|++|++||
T Consensus       241 v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd  320 (406)
T KOG0295|consen  241 VRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD  320 (406)
T ss_pred             EEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence            99999999999998 999999999999888889999999999999772               35999999999999999


Q ss_pred             CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235          609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp  688 (707)
                      +.++ .++.+|.+|...|+.++|||.|++|+|+.+|++++||      |+....   +.+++..|...    |++++|+.
T Consensus       321 v~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw------dl~~~~---cmk~~~ah~hf----vt~lDfh~  386 (406)
T KOG0295|consen  321 VSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVW------DLKNLQ---CMKTLEAHEHF----VTSLDFHK  386 (406)
T ss_pred             ccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEE------Eeccce---eeeccCCCcce----eEEEecCC
Confidence            9998 8899999999999999999999999999999999999      444444   47888899888    99999999


Q ss_pred             CCCEEEEEeCCCcEEEEe
Q 005235          689 RQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       689 dg~~L~s~g~Dg~IrlWd  706 (707)
                      +-++++||+-|.++++|.
T Consensus       387 ~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  387 TAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             CCceEEeccccceeeeee
Confidence            999999999999999995

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.5e-32  Score=280.22  Aligned_cols=272  Identities=19%  Similarity=0.234  Sum_probs=239.9

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCC--chhcccccceeeeccc-----ccccCCCCcEEEEecCCccceE
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN--EEEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGI  489 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~--~~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~  489 (707)
                      ...|..|.|.|+| +.|++++..|.+.+|+..+..  ..++.|...|.++.++     +++++.+|.|+.|...-..+..
T Consensus        96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             ccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            5689999999999 589999999999999986653  3677888888888887     8899999999999887655555


Q ss_pred             Ee-ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE
Q 005235          490 RL-RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYD  566 (707)
Q Consensus       490 ~~-~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD  566 (707)
                      .. .|...|++++|+|+...|++++.||   +|+|||....... ..+ +|.-.|.++.|||...+|++++ |+.|++||
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg---~ikiWdf~~~kee-~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDG---TIKIWDFRMPKEE-RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCC---eEEEEeccCCchh-heeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence            44 4559999999999999999999999   9999999988877 777 9999999999999999999999 89999999


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCC
Q 005235          567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDC  645 (707)
Q Consensus       567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg  645 (707)
                      .+++.++.++..|...|..+.|+|++++|+++|.|..+++||+++. +.+.++++|...|++++|||-.. +|++|+.||
T Consensus       251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence            9999999999999999999999999999999999999999999965 67889999999999999999655 899999999


Q ss_pred             cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .|..|.+.     .+.++   ...-.+|...    |++++|||-|.+|++|+.|.++++|.
T Consensus       330 svvh~~v~-----~~~p~---~~i~~AHd~~----iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  330 SVVHWVVG-----LEEPL---GEIPPAHDGE----IWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             ceEEEecc-----ccccc---cCCCcccccc----eeeeeccccceeEeecCCCcceeeec
Confidence            99999653     12222   1223467766    99999999999999999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.3e-31  Score=284.71  Aligned_cols=389  Identities=13%  Similarity=0.133  Sum_probs=304.5

Q ss_pred             CCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceee----eeEEEcCc
Q 005235          290 KLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERC----MDLYLCPR  358 (707)
Q Consensus       290 ~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rc----ldL~l~pr  358 (707)
                      .+.+|..     +|++++..+.+.+.          |+.+  |.-.++..++.+|.|+..=...+.+-    -..|+-.+
T Consensus       187 ~~~~H~S~vtsL~~~~d~~~~ls~~R----------Dkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta  256 (775)
T KOG0319|consen  187 TMILHKSAVTSLAFSEDSLELLSVGR----------DKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA  256 (775)
T ss_pred             HHHhhhhheeeeeeccCCceEEEecc----------CcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence            4455543     69999998888777          6665  55578888999998876521111110    01233333


Q ss_pred             cccceeec-CCCCC--C-----CCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCC
Q 005235          359 VRKKRVNI-DPETL--K-----PKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLP  429 (707)
Q Consensus       359 ~~k~~lni-dp~~l--l-----p~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg  429 (707)
                      +....+.+ ++++-  +     |..|....+-+-+... .++....|..+.++|..+++..+.+-+ .+.|..|+|-...
T Consensus       257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~-~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e  335 (775)
T KOG0319|consen  257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS-QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE  335 (775)
T ss_pred             cCCceEEEEecccchhhhhhccCCchhhhcceeccccC-ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence            33333332 44431  1     1111122222333333 344556788899999999998888877 8899999987655


Q ss_pred             CccEEEEEeCCeEEEEECCCCCc-hhcccccceeeec-cc----ccccCCCCcEEEEecCCccc-----eEEeccCCCeE
Q 005235          430 ELPVLAVSVGQDVLILNTGLGNE-EEQRRVKDLLHVE-TP----TAPDDNMASIVSWLQHDKLD-----GIRLRHFKMVS  498 (707)
Q Consensus       430 ~~~lla~s~d~~V~lwd~~~~~~-~~~~~~~~v~~~~-~~----~~~~~~d~~i~iW~~~~~~~-----~~~~~h~~~V~  498 (707)
                      +..+++++....+++++..+... .+.+|++.++++. +.    +++++.|.++++|.+.....     ....+|.+.|.
T Consensus       336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg  415 (775)
T KOG0319|consen  336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG  415 (775)
T ss_pred             cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence            56888899999999999887654 6788999998887 22    89999999999998843322     22568999999


Q ss_pred             EEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceee--e------ee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235          499 SVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHR--I------PF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL  567 (707)
Q Consensus       499 ~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~--~------~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl  567 (707)
                      +|+++..| .+|+++|.|+   ++++|++.......  .      .- .|...|+||+.+|+.++|++|+ |++.+||++
T Consensus       416 ava~~~~~asffvsvS~D~---tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l  492 (775)
T KOG0319|consen  416 AVAGSKLGASFFVSVSQDC---TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL  492 (775)
T ss_pred             eeeecccCccEEEEecCCc---eEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence            99997755 5889999988   99999998722110  1      11 6788999999999999999999 999999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235          568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTA  647 (707)
Q Consensus       568 ~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I  647 (707)
                      ....+..+|.+|...|.|+.|+|....|+++|.|++|+||.+.+. .++++|.||+.+|..+.|-.+|..|+||+.||-|
T Consensus       493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGli  571 (775)
T KOG0319|consen  493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLI  571 (775)
T ss_pred             cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcE
Confidence            999999999999999999999999999999999999999999987 8999999999999999999999999999999999


Q ss_pred             EEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          648 YVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       648 ~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      +||++      .++.   |+.++.+|...    |++++-+|....++|||.||.|.+|.
T Consensus       572 KlWni------kt~e---C~~tlD~H~Dr----vWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  572 KLWNI------KTNE---CEMTLDAHNDR----VWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             EEEec------cchh---hhhhhhhccce----eEEEeecCccceeEecCCCeEEEEee
Confidence            99954      4444   48899999998    99999999999999999999999993

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=9.5e-30  Score=266.71  Aligned_cols=352  Identities=17%  Similarity=0.201  Sum_probs=278.3

Q ss_pred             CCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccc---cccccccccceeeeeEEEcCcc
Q 005235          290 KLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVP---AYENAVKDSFERCMDLYLCPRV  359 (707)
Q Consensus       290 ~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~---~~~~~i~e~f~rcldL~l~pr~  359 (707)
                      .+..|..     .|||+|++.+|.+.          |+++  |.=+.++.+..+.   ++...|       ..|.|+|+.
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gs----------Dgki~iyDGktge~vg~l~~~~aHkGsI-------falsWsPDs  247 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGS----------DGKIYIYDGKTGEKVGELEDSDAHKGSI-------FALSWSPDS  247 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecC----------CccEEEEcCCCccEEEEecCCCCccccE-------EEEEECCCC
Confidence            4445554     69999999999887          7777  5556666666665   565555       899999887


Q ss_pred             ccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecC----CcEEEEEEccCCCccEEE
Q 005235          360 RKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIG----EAIQYVAWNPLPELPVLA  435 (707)
Q Consensus       360 ~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~----~~V~~v~~spdg~~~lla  435 (707)
                      .                             .++|+|.|.+++|||+.++.+++++...    ..-..+.|-.+   .|++
T Consensus       248 ~-----------------------------~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd---~lIt  295 (603)
T KOG0318|consen  248 T-----------------------------QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD---HLIT  295 (603)
T ss_pred             c-----------------------------eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC---eEEE
Confidence            3                             7999999999999999999999999883    34456667643   5999


Q ss_pred             EEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEE--eccCCCeEEEEEcCCC
Q 005235          436 VSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIR--LRHFKMVSSVEWHRRG  506 (707)
Q Consensus       436 ~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~--~~h~~~V~~v~~sp~g  506 (707)
                      ++.+|+|.++++...+.  .+.+|.+.+.++..+     +.+++.||.|..|+...+....+  ..|...|.+++-+..+
T Consensus       296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~  375 (603)
T KOG0318|consen  296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG  375 (603)
T ss_pred             EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence            99999999999988764  677899999888776     89999999999999987776654  5799999999987666


Q ss_pred             CEEEEEeCCCCccEEEEEECCCCcee----------e-------------------ee-e---------ccCCCeEEEEE
Q 005235          507 DYLSTVMPAGESRAIFMHQLSKKLSH----------R-------------------IP-F---------KLHGLPVSSVF  547 (707)
Q Consensus       507 ~~lat~s~dg~~~~V~Iwdl~~~~~~----------~-------------------~~-~---------~~~~~V~~v~f  547 (707)
                      .+ ++++.|.   ++++.++......          .                   .. +         ...-.+.++++
T Consensus       376 ~~-~t~g~Dd---~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv  451 (603)
T KOG0318|consen  376 EL-FTIGWDD---TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV  451 (603)
T ss_pred             cE-EEEecCC---eEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE
Confidence            54 4555555   6777755221100          0                   00 0         11235678999


Q ss_pred             eCCCCEEEEEe-CCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235          548 HPTRSIFFVST-KKNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK  624 (707)
Q Consensus       548 spd~~~l~v~s-dg~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~  624 (707)
                      +|++..+++|+ |+.|+||.|....+  ...+..|.+.|+++++||+|.+||+|...+.+.+||+.+.......+..|++
T Consensus       452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta  531 (603)
T KOG0318|consen  452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA  531 (603)
T ss_pred             cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee
Confidence            99999999999 89999999987543  3356678899999999999999999999999999999987555566778999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235          625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                      .|.+++|+|+..++|+||-|-.|.||.+..+.      .  .+.....|...    |+.+.|-. ...|+|+|.|..|++
T Consensus       532 kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~------~--~i~iknAH~~g----Vn~v~wld-e~tvvSsG~Da~iK~  598 (603)
T KOG0318|consen  532 KINCVAWSPNNKLVATGSLDTNVIIYSVKKPA------K--HIIIKNAHLGG----VNSVAWLD-ESTVVSSGQDANIKV  598 (603)
T ss_pred             eEEEEEeCCCceEEEeccccceEEEEEccChh------h--heEeccccccC----ceeEEEec-CceEEeccCcceeEE
Confidence            99999999999999999999999999654221      1  15555677654    99999975 467999999999999


Q ss_pred             EeC
Q 005235          705 YCH  707 (707)
Q Consensus       705 Wdl  707 (707)
                      |++
T Consensus       599 W~v  601 (603)
T KOG0318|consen  599 WNV  601 (603)
T ss_pred             ecc
Confidence            985

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.6e-30  Score=250.12  Aligned_cols=287  Identities=21%  Similarity=0.336  Sum_probs=228.8

Q ss_pred             ccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC---eEEEEEec--C
Q 005235          343 VKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG---RCLRVLEI--G  417 (707)
Q Consensus       343 i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg---~~l~~l~~--~  417 (707)
                      ++.|..|+..+++.|..                            +.+||+||.|..||||+...+   .|...+..  .
T Consensus        10 ~~gh~~r~W~~awhp~~----------------------------g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk   61 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGK----------------------------GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK   61 (312)
T ss_pred             ecCCCCcEEEEEeccCC----------------------------ceEEEeecCCceEEEEecCCCCcEEEEEeccccch
Confidence            45566688888887651                            348999999999999998853   34444433  7


Q ss_pred             CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235          418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV  497 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V  497 (707)
                      ..|.+|+|+|.| +.|++++.|.++.||.-..++..                                ....+.+|...|
T Consensus        62 rsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efe--------------------------------cv~~lEGHEnEV  108 (312)
T KOG0645|consen   62 RSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFE--------------------------------CVATLEGHENEV  108 (312)
T ss_pred             heeeeeeecCCC-cEEEEeeccceEEEeecCCCcee--------------------------------EEeeeeccccce
Confidence            899999999999 48888899999999985433221                                122477999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee--eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC-C--C
Q 005235          498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR--IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL-K--Q  570 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~-~--~  570 (707)
                      .|++|+++|.|||++++|.   +|-||.+.......  ..+ .|...|..+.|||...+|++++ |++|++|.-. .  -
T Consensus       109 K~Vaws~sG~~LATCSRDK---SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW  185 (312)
T KOG0645|consen  109 KCVAWSASGNYLATCSRDK---SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDW  185 (312)
T ss_pred             eEEEEcCCCCEEEEeeCCC---eEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCe
Confidence            9999999999999999988   99999998543321  445 8999999999999999999999 9999999866 2  3


Q ss_pred             eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          571 RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       571 ~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      .++.+|.+|...|.+++|+|.|..|++++.|++|+||-+.+.     .-.-|..++..++|.  .-.|||++.|+.|+||
T Consensus       186 ~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf  258 (312)
T KOG0645|consen  186 ECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLF  258 (312)
T ss_pred             eEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEE
Confidence            789999999999999999999999999999999999986533     112477899999998  4589999999999999


Q ss_pred             ecccccCCCCCCcccce-EEeeCCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 005235          651 HGMVYSDLNQNPLIVPL-EILRGHTSSNGRGVMDCKFHPR-QPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl-~~l~gh~~~~~~gV~~l~fspd-g~~L~s~g~Dg~IrlWdl  707 (707)
                      .-.   +-...+....+ +.-..|...    |++++|.|. ...|++||.||.|++|.|
T Consensus       259 ~~s---~~~d~p~~~l~~~~~~aHe~d----VNsV~w~p~~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  259 KES---DSPDEPSWNLLAKKEGAHEVD----VNSVQWNPKVSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             Eec---CCCCCchHHHHHhhhcccccc----cceEEEcCCCCCceeecCCCceEEEEEe
Confidence            543   21122332222 234456665    999999995 678999999999999975

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.2e-29  Score=260.47  Aligned_cols=265  Identities=26%  Similarity=0.341  Sum_probs=230.3

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++|+.||.|++|++.+++....+.. ...+.++.|+|++ ..+++++.++.|.+|++..+..               
T Consensus        22 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~---------------   85 (289)
T cd00200          22 KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGEC---------------   85 (289)
T ss_pred             CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCcccc---------------
Confidence            4899999999999999999887777766 6778899999998 4688888899999999765311               


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                         ...+..|...|.++.|++++.++++++.++   .|.+|++.+.... ..+ .+...+.+++
T Consensus        86 -------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~-~~~~~~~~~i~~~~  142 (289)
T cd00200          86 -------------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDK---TIKVWDVETGKCL-TTLRGHTDWVNSVA  142 (289)
T ss_pred             -------------------eEEEeccCCcEEEEEEcCCCCEEEEecCCC---eEEEEECCCcEEE-EEeccCCCcEEEEE
Confidence                               112446778999999999999998888777   9999999977766 667 7888999999


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      |+|++.++++++ ++.|++||+.+++.+..+..+...|.+++|+|++..|++++.++.|++||+..+ .++..+..|...
T Consensus       143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~  221 (289)
T cd00200         143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENG  221 (289)
T ss_pred             EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCCc
Confidence            999999999998 999999999999888889888889999999999999999999999999999876 677888789999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          626 ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      |.+++|+|++.++++++.||.|++|+..      ...   ++..+.+|...    |.+++|+|++.+|++++.||.|++|
T Consensus       222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~------~~~---~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         222 VNSVAFSPDGYLLASGSEDGTIRVWDLR------TGE---CVQTLSGHTNS----VTSLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             eEEEEEcCCCcEEEEEcCCCcEEEEEcC------Cce---eEEEccccCCc----EEEEEECCCCCEEEEecCCCeEEec
Confidence            9999999999999999889999999643      322   36677788776    9999999999999999999999999


Q ss_pred             e
Q 005235          706 C  706 (707)
Q Consensus       706 d  706 (707)
                      +
T Consensus       289 ~  289 (289)
T cd00200         289 D  289 (289)
T ss_pred             C
Confidence            6

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=4.3e-31  Score=289.58  Aligned_cols=269  Identities=18%  Similarity=0.224  Sum_probs=222.9

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCC-------------------------------eEEEEEec-CCcEEEEEEccCCC
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESG-------------------------------RCLRVLEI-GEAIQYVAWNPLPE  430 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg-------------------------------~~l~~l~~-~~~V~~v~~spdg~  430 (707)
                      -|+.+++++|.|-.|..|++|.+...                               ...+++-+ .++|..+.|+|+. 
T Consensus       385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~-  463 (707)
T KOG0263|consen  385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR-  463 (707)
T ss_pred             eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccc-
Confidence            36667778888888889999987631                               11122222 8999999999998 


Q ss_pred             ccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEE
Q 005235          431 LPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLS  510 (707)
Q Consensus       431 ~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~la  510 (707)
                      ..|++++.|++|++|.+.+....                                  ....+|..+|.++.|+|.|-|||
T Consensus       464 rfLlScSED~svRLWsl~t~s~~----------------------------------V~y~GH~~PVwdV~F~P~GyYFa  509 (707)
T KOG0263|consen  464 RFLLSCSEDSSVRLWSLDTWSCL----------------------------------VIYKGHLAPVWDVQFAPRGYYFA  509 (707)
T ss_pred             cceeeccCCcceeeeecccceeE----------------------------------EEecCCCcceeeEEecCCceEEE
Confidence            58889999999999998765321                                  13459999999999999999999


Q ss_pred             EEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Q 005235          511 TVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAI  588 (707)
Q Consensus       511 t~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~  588 (707)
                      |++.|+   +.++|........ +.| +|.+.|.|+.|||+..++++|+ |++||+||+.+|..++.|.+|.++|++|+|
T Consensus       510 tas~D~---tArLWs~d~~~Pl-RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~  585 (707)
T KOG0263|consen  510 TASHDQ---TARLWSTDHNKPL-RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF  585 (707)
T ss_pred             ecCCCc---eeeeeecccCCch-hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence            999988   9999999988777 778 9999999999999999999998 999999999999999999999999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC--------C-
Q 005235          589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL--------N-  659 (707)
Q Consensus       589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl--------~-  659 (707)
                      ||+|.+|++|+.||.|.+||+..+ .++..+.+|++.|.++.||.+|..||+|+.|++|++||+......        . 
T Consensus       586 Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~  664 (707)
T KOG0263|consen  586 SPCGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSN  664 (707)
T ss_pred             cCCCceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccccc
Confidence            999999999999999999999987 889999999999999999999999999999999999987643221        0 


Q ss_pred             ------CCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235          660 ------QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT  695 (707)
Q Consensus       660 ------~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s  695 (707)
                            .+.....+..+..-..+    |..+.|.-..-.|+.
T Consensus       665 ~~~~~~~~~~~~llgs~~tK~tp----v~~l~FtrrNl~L~~  702 (707)
T KOG0263|consen  665 SAITQENNASSLLLGSFYTKNTP----VVGLHFTRRNLLLAV  702 (707)
T ss_pred             ccccccCCCCcceeeeeeecCce----EEEEEEeccceeEEe
Confidence                  11122234555554444    888888776533333

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=1.2e-30  Score=261.98  Aligned_cols=271  Identities=18%  Similarity=0.205  Sum_probs=234.5

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      ..+++||.|++++|||+.+|++..++.+ -..|..|++|+-. .++++++.|+.|+.||+......              
T Consensus       164 ~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nkvI--------------  228 (460)
T KOG0285|consen  164 EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNKVI--------------  228 (460)
T ss_pred             eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEEEechhhhhH--------------
Confidence            5899999999999999999999999996 8899999999988 48999999999999998654211              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                          ....+|-+.|.|++.+|.-+.|++++.|.   +++|||+++.... ..+ +|..+|.+|.
T Consensus       229 --------------------R~YhGHlS~V~~L~lhPTldvl~t~grDs---t~RvWDiRtr~~V-~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  229 --------------------RHYHGHLSGVYCLDLHPTLDVLVTGGRDS---TIRVWDIRTRASV-HVLSGHTNPVASVM  284 (460)
T ss_pred             --------------------HHhccccceeEEEeccccceeEEecCCcc---eEEEeeecccceE-EEecCCCCcceeEE
Confidence                                12458999999999999999999999998   9999999999988 888 9999999999


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      +.|..+.+++|+ |++|++||++.++...++..|...+.+++.||....+|+++.| .|+-|++..+ ..+..+.+|+..
T Consensus       285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g-~f~~nlsgh~~i  362 (460)
T KOG0285|consen  285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG-EFLQNLSGHNAI  362 (460)
T ss_pred             eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc-chhhccccccce
Confidence            999999999999 9999999999999999999999999999999999999999987 6899999877 556679999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          626 ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      |++++.+.|+ ++++|++.|.|.+||.+..........++....+..     ..||.+.+|...|..|+||.+|.+|++|
T Consensus       363 intl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~s-----EagI~as~fDktg~rlit~eadKtIk~~  436 (460)
T KOG0285|consen  363 INTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLES-----EAGIFASCFDKTGSRLITGEADKTIKMY  436 (460)
T ss_pred             eeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcccc-----ccceeEEeecccCceEEeccCCcceEEE
Confidence            9999998776 678999999999997654433333222222222222     3469999999999999999999999999


Q ss_pred             e
Q 005235          706 C  706 (707)
Q Consensus       706 d  706 (707)
                      .
T Consensus       437 k  437 (460)
T KOG0285|consen  437 K  437 (460)
T ss_pred             e
Confidence            4

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=6.4e-30  Score=265.09  Aligned_cols=302  Identities=18%  Similarity=0.224  Sum_probs=258.0

Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCC--CeEEE--EEec-----------CCcEEEEEEccCCCccEEEEEeCCeEEEEECCC
Q 005235          385 PVACYLEYKGSTDGTVRIWEVES--GRCLR--VLEI-----------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL  449 (707)
Q Consensus       385 p~~~~~l~sgs~DgtVrIWd~~t--g~~l~--~l~~-----------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~  449 (707)
                      |....++++|+.|-+.|+|++..  +.+..  .+++           +..|++|+|+.+| ..|+++..+|.+++|+...
T Consensus       188 P~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G  266 (524)
T KOG0273|consen  188 PLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG-TLLATGSEDGEARIWNKDG  266 (524)
T ss_pred             chhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC-CeEEEeecCcEEEEEecCc
Confidence            34445899999999999999874  22211  1221           5789999999999 4788888999999999876


Q ss_pred             CCc-hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEE
Q 005235          450 GNE-EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIF  522 (707)
Q Consensus       450 ~~~-~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~  522 (707)
                      ... .+..|..+++++.+.     +++++-|+++.+|+...+.... +.-|..+-..|.|-. ..-|++.+.|+   .|+
T Consensus       267 ~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~---~i~  342 (524)
T KOG0273|consen  267 NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDG---CIH  342 (524)
T ss_pred             hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCc---eEE
Confidence            543 567788999999987     8999999999999997766654 556777768899974 46799999988   999


Q ss_pred             EEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC--------
Q 005235          523 MHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG--------  592 (707)
Q Consensus       523 Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg--------  592 (707)
                      |+.+...... .+| +|.+.|.++.|.|.+.+|++++ |++++||+.........|..|...|..+.|+|.|        
T Consensus       343 V~kv~~~~P~-~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~  421 (524)
T KOG0273|consen  343 VCKVGEDRPV-KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM  421 (524)
T ss_pred             EEEecCCCcc-eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence            9999988888 888 9999999999999999999999 8999999999888999999999999999999965        


Q ss_pred             -CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee
Q 005235          593 -DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR  671 (707)
Q Consensus       593 -~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~  671 (707)
                       ..|++++.|++|++||+..+ .++.+|..|+.+|.+|+|+|+|.++|+|+.||.|.||+.      ....+   ++...
T Consensus       422 ~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~------~~~~l---~~s~~  491 (524)
T KOG0273|consen  422 NLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST------KTGKL---VKSYQ  491 (524)
T ss_pred             CceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc------cchhe---eEeec
Confidence             57899999999999999987 899999999999999999999999999999999999944      34433   56666


Q ss_pred             CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          672 GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       672 gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +...     |..++|+-+|..|..+-.||.+++-||
T Consensus       492 ~~~~-----Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  492 GTGG-----IFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             CCCe-----EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            5543     999999999999999999999999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=2e-29  Score=247.97  Aligned_cols=245  Identities=16%  Similarity=0.205  Sum_probs=209.7

Q ss_pred             EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE
Q 005235          412 RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR  490 (707)
Q Consensus       412 ~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~  490 (707)
                      +++++ .+.|.++.|++|. +.|++++.||.+.|||.-+...                                  ...+
T Consensus        49 r~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK----------------------------------~hai   93 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNK----------------------------------VHAI   93 (343)
T ss_pred             EEecccccceeeeEecCCc-CeEEeeccCCeEEEEEcccccc----------------------------------eeEE
Confidence            56666 7899999999999 5899999999999999655422                                  1123


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC--c---eeeeee-ccCCCeEEEEEeCCCCEEEEEeCCeEEE
Q 005235          491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK--L---SHRIPF-KLHGLPVSSVFHPTRSIFFVSTKKNIRV  564 (707)
Q Consensus       491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~--~---~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg~I~i  564 (707)
                      .-....|..++|+|.|+++|+|+.|.   .+.||++.+.  .   ...+.+ +|.+.+.|..|-+|+.+|..++|.++.+
T Consensus        94 pl~s~WVMtCA~sPSg~~VAcGGLdN---~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCal  170 (343)
T KOG0286|consen   94 PLPSSWVMTCAYSPSGNFVACGGLDN---KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCAL  170 (343)
T ss_pred             ecCceeEEEEEECCCCCeEEecCcCc---eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEE
Confidence            34567899999999999999999988   9999999855  1   111556 9999999999999776555555999999


Q ss_pred             EECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC
Q 005235          565 YDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       565 wDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~  643 (707)
                      ||+.+++.+..|.+|.+.|.+++++| +++.+++|+.|+..++||++.+ .+.++|.+|...|++|.|+|+|.-|++||+
T Consensus       171 WDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSD  249 (343)
T KOG0286|consen  171 WDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSD  249 (343)
T ss_pred             EEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCC
Confidence            99999999999999999999999999 9999999999999999999988 889999999999999999999999999999


Q ss_pred             CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          644 DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      |+++++||      +.....   +..+....  ...||++++||-.|++|++|..|.++.+||
T Consensus       250 D~tcRlyD------lRaD~~---~a~ys~~~--~~~gitSv~FS~SGRlLfagy~d~~c~vWD  301 (343)
T KOG0286|consen  250 DATCRLYD------LRADQE---LAVYSHDS--IICGITSVAFSKSGRLLFAGYDDFTCNVWD  301 (343)
T ss_pred             CceeEEEe------ecCCcE---EeeeccCc--ccCCceeEEEcccccEEEeeecCCceeEee
Confidence            99999995      444443   34444222  235699999999999999999999999998

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-29  Score=246.22  Aligned_cols=246  Identities=17%  Similarity=0.169  Sum_probs=206.6

Q ss_pred             EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE
Q 005235          412 RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR  490 (707)
Q Consensus       412 ~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~  490 (707)
                      .++++ .+.|+.++..+.+...++.++.|.++.+|++...+...                             +..+..+
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~-----------------------------G~~~r~~   59 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY-----------------------------GVPVRRL   59 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc-----------------------------Cceeeee
Confidence            34555 78999999998865678888899999999976542110                             1112246


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235          491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL  568 (707)
Q Consensus       491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~  568 (707)
                      .+|...|..++.+++|+++++++.|+   .+++||+.+++.. +.| +|...|.+++|+++...+++|+ |++|.+||+.
T Consensus        60 ~GHsH~v~dv~~s~dg~~alS~swD~---~lrlWDl~~g~~t-~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~  135 (315)
T KOG0279|consen   60 TGHSHFVSDVVLSSDGNFALSASWDG---TLRLWDLATGEST-RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL  135 (315)
T ss_pred             eccceEecceEEccCCceEEeccccc---eEEEEEecCCcEE-EEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence            78999999999999999999999999   9999999999887 888 9999999999999999999999 9999999987


Q ss_pred             CCeEEEEEeCC--CCCeEEEEEcCC--CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235          569 KQRLIKKLETG--LKEVSSIAIHPA--GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD  644 (707)
Q Consensus       569 ~~~~~~~l~~~--~~~I~sl~~spd--g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D  644 (707)
                      .+ +..++..+  ..+|+|+.|+|+  ..+|+++|.|++|++||+++. +....+.+|++.++.+++||||.++++|+.|
T Consensus       136 g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkd  213 (315)
T KOG0279|consen  136 GV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKD  213 (315)
T ss_pred             cc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCC
Confidence            54 44444443  789999999998  689999999999999999976 7788899999999999999999999999999


Q ss_pred             CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          645 CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       645 g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |.+.+|      |+.+...   +..+. |...    |.+++|+|+..||+.+.+. .|+|||+
T Consensus       214 g~~~Lw------dL~~~k~---lysl~-a~~~----v~sl~fspnrywL~~at~~-sIkIwdl  261 (315)
T KOG0279|consen  214 GEAMLW------DLNEGKN---LYSLE-AFDI----VNSLCFSPNRYWLCAATAT-SIKIWDL  261 (315)
T ss_pred             ceEEEE------EccCCce---eEecc-CCCe----EeeEEecCCceeEeeccCC-ceEEEec
Confidence            999999      5555544   55554 4444    9999999998888776644 5999986

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.3e-28  Score=267.17  Aligned_cols=317  Identities=16%  Similarity=0.180  Sum_probs=264.6

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCc--hhcccc
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNE--EEQRRV  458 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~--~~~~~~  458 (707)
                      .|.....++++|-..|...++++..-.+++.+.. ...|..++|+..|+ .|+.+|. =|.+.||++.+...  ..++|.
T Consensus       272 ~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQgH~  350 (893)
T KOG0291|consen  272 AFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQQGHS  350 (893)
T ss_pred             eccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeeccccc
Confidence            4777788999999999999999999999999988 68999999999995 3433333 36999999988765  345678


Q ss_pred             cceeeeccc-----ccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235          459 KDLLHVETP-----TAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH  532 (707)
Q Consensus       459 ~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~  532 (707)
                      ..+.++.++     +++|+.|+.|++|+...+.... +..|++.|+.+.|+..|+.+++.+.||   +|+.||+...+.-
T Consensus       351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG---tVRAwDlkRYrNf  427 (893)
T KOG0291|consen  351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG---TVRAWDLKRYRNF  427 (893)
T ss_pred             cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC---eEEeeeeccccee
Confidence            888888887     8999999999999998876654 778999999999999999999999999   9999999999888


Q ss_pred             eeee--ccCCCeEEEEEeCCCCEEEEEe-C-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          533 RIPF--KLHGLPVSSVFHPTRSIFFVST-K-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       533 ~~~~--~~~~~V~~v~fspd~~~l~v~s-d-g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                       ++|  .......|++..|.|.++++|+ | =.|.+|++++|+++-.|.+|.++|.+++|+|.|..|++||.|.+|++||
T Consensus       428 -RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  428 -RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             -eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence             888  4445566888899999999988 4 5799999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc---------CCCCCCcccceEEeeCCCCCCCC
Q 005235          609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYS---------DLNQNPLIVPLEILRGHTSSNGR  679 (707)
Q Consensus       609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~---------Dl~~~~~~~pl~~l~gh~~~~~~  679 (707)
                      +-.....+.++. +...+.+++|+|+|.-||+++.||.|.+||.....         |+..+...  ...+.......+.
T Consensus       507 if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~--~D~~ta~~sa~~K  583 (893)
T KOG0291|consen  507 IFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKE--TDRITAENSAKGK  583 (893)
T ss_pred             eeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccc--cceeehhhcccCC
Confidence            976655666776 67789999999999999999999999999875321         11111111  1112222222234


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          680 GVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       680 gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ..+.+++++||..|++||....|+||++
T Consensus       584 ~Ftti~ySaDG~~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  584 TFTTICYSADGKCILAGGESNSICIYDV  611 (893)
T ss_pred             ceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence            5899999999999999999999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.9e-28  Score=292.97  Aligned_cols=282  Identities=15%  Similarity=0.164  Sum_probs=223.2

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCC----e----EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESG----R----CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE  454 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg----~----~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~  454 (707)
                      .|..++.++++|+.|++|+||++.+.    .    .+..+.....|.+++|+|.....|++++.|++|++||+.++..  
T Consensus       490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~--  567 (793)
T PLN00181        490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL--  567 (793)
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--
Confidence            36667789999999999999997532    1    2233444678999999986435788888999999999765421  


Q ss_pred             cccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235          455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~  533 (707)
                                                      ...+.+|.+.|.+++|+| ++.+|++++.|+   .|++||+.++... 
T Consensus       568 --------------------------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg---~v~iWd~~~~~~~-  611 (793)
T PLN00181        568 --------------------------------VTEMKEHEKRVWSIDYSSADPTLLASGSDDG---SVKLWSINQGVSI-  611 (793)
T ss_pred             --------------------------------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCC---EEEEEECCCCcEE-
Confidence                                            113458999999999997 789999999998   9999999988776 


Q ss_pred             eeeccCCCeEEEEEe-CCCCEEEEEe-CCeEEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235          534 IPFKLHGLPVSSVFH-PTRSIFFVST-KKNIRVYDLLKQR-LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD  610 (707)
Q Consensus       534 ~~~~~~~~V~~v~fs-pd~~~l~v~s-dg~I~iwDl~~~~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~  610 (707)
                      ..+.....+.++.|+ +++.+|++|+ |+.|++||+++.+ .+..+.+|...|+++.|. ++.+|++|+.|+.|++||+.
T Consensus       612 ~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        612 GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             EEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            666555789999995 4688999988 9999999998765 567788999999999997 68899999999999999997


Q ss_pred             CC-----CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCC--CCcccce--EEeeCCCCCCCCCe
Q 005235          611 LS-----SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQ--NPLIVPL--EILRGHTSSNGRGV  681 (707)
Q Consensus       611 ~~-----~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~--~~~~~pl--~~l~gh~~~~~~gV  681 (707)
                      ..     ..++..+.+|...+.+++|+|++.+||+|+.||+|+||+......+..  .....++  ..+..|...    |
T Consensus       691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~----V  766 (793)
T PLN00181        691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF----I  766 (793)
T ss_pred             CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE----E
Confidence            43     256888999999999999999999999999999999997532210000  0000001  112233333    9


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          682 MDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       682 ~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .+++|+|++..|++|+.||+|+||++
T Consensus       767 ~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        767 SSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEcCCCCeEEEecCCCcEEEEec
Confidence            99999999999999999999999986

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=2.4e-30  Score=269.38  Aligned_cols=275  Identities=18%  Similarity=0.295  Sum_probs=234.7

Q ss_pred             CCCcccCCCCcEEEEEeCCCcEEEEeCCC-CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235          379 KDLKPYPVACYLEYKGSTDGTVRIWEVES-GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR  456 (707)
Q Consensus       379 ~~l~pfp~~~~~l~sgs~DgtVrIWd~~t-g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~  456 (707)
                      ..+++||....++++||.|+.|+||++-. ++|+++|.+ ..+|..++|+++| ..+++++.|+.|++||+++|...   
T Consensus       218 sai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~---  293 (503)
T KOG0282|consen  218 SAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVL---  293 (503)
T ss_pred             chhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-CeeeeeecceeeeeeccccceEE---
Confidence            35667888889999999999999999986 999999998 8999999999999 58999999999999999987432   


Q ss_pred             cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235          457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIP  535 (707)
Q Consensus       457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~  535 (707)
                                                      ........++|+.|+|++ +.|++|+.|+   .|+.||++.+... ..
T Consensus       294 --------------------------------~~f~~~~~~~cvkf~pd~~n~fl~G~sd~---ki~~wDiRs~kvv-qe  337 (503)
T KOG0282|consen  294 --------------------------------SRFHLDKVPTCVKFHPDNQNIFLVGGSDK---KIRQWDIRSGKVV-QE  337 (503)
T ss_pred             --------------------------------EEEecCCCceeeecCCCCCcEEEEecCCC---cEEEEeccchHHH-HH
Confidence                                            122345678999999998 8899999988   9999999999987 88


Q ss_pred             e-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          536 F-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       536 ~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                      + .|-+.|..+.|-+++..+++++ |++|+||+.+..-+++... .+.-...||..+|++.++++-+.|+.|.+|.+...
T Consensus       338 Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~  417 (503)
T KOG0282|consen  338 YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP  417 (503)
T ss_pred             HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence            8 8999999999999999999998 7999999999876665433 23334678999999999999999999999997642


Q ss_pred             --CcceEEeecCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235          613 --SKPYRVLKCHP--KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       613 --~~~~~~l~~h~--~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp  688 (707)
                        ....+.+.+|.  +.-..|.|||||.+|++|+.||.+.+||      ..+..+   +..+.+|...    +..+.|||
T Consensus       418 ~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd------wkt~kl---~~~lkah~~~----ci~v~wHP  484 (503)
T KOG0282|consen  418 FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD------WKTTKL---VSKLKAHDQP----CIGVDWHP  484 (503)
T ss_pred             cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee------chhhhh---hhccccCCcc----eEEEEecC
Confidence              13456788886  3456789999999999999999999994      444444   7788999887    99999999


Q ss_pred             CCC-EEEEEeCCCcEEEEe
Q 005235          689 RQP-WLFTAGADSVIRLYC  706 (707)
Q Consensus       689 dg~-~L~s~g~Dg~IrlWd  706 (707)
                      ..+ -+||||.||.|++|+
T Consensus       485 ~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  485 VEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCcceeEecccCceeEecC
Confidence            776 689999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=2.1e-29  Score=261.20  Aligned_cols=279  Identities=20%  Similarity=0.275  Sum_probs=241.2

Q ss_pred             EEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC----Cc------------hhcccccceeeeccc-----cc
Q 005235          411 LRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG----NE------------EEQRRVKDLLHVETP-----TA  469 (707)
Q Consensus       411 l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~----~~------------~~~~~~~~v~~~~~~-----~~  469 (707)
                      .+.+.+..+|.+.+|+|-.+..+.+++.+...++|++...    ..            .....+..+.++.|+     ++
T Consensus       172 ~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  172 AKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            3445568899999999987445666677889999998741    11            111234667778776     89


Q ss_pred             ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe
Q 005235          470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH  548 (707)
Q Consensus       470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs  548 (707)
                      +|..+|.+++|+..+.....+..|.++|.++.|+.+|+||++++.|+   ++.+||..++... ..| -|..+...|.|-
T Consensus       252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~---ttilwd~~~g~~~-q~f~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDG---TTILWDAHTGTVK-QQFEFHSAPALDVDWQ  327 (524)
T ss_pred             EeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCc---cEEEEeccCceEE-EeeeeccCCccceEEe
Confidence            99999999999999999888999999999999999999999999999   9999999999887 778 566666788998


Q ss_pred             CCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEE
Q 005235          549 PTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITN  628 (707)
Q Consensus       549 pd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~  628 (707)
                      .+..+..+++|+.|+||-+....+++++.+|.+.|++|.|+|.|.+|+++|.|++++||.+... .....|.+|...|..
T Consensus       328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~Hskei~t  406 (524)
T KOG0273|consen  328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQAHSKEIYT  406 (524)
T ss_pred             cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhhhccceee
Confidence            8777666666999999999999999999999999999999999999999999999999999766 778899999999999


Q ss_pred             EEEcCCCC---------EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235          629 VAFHRSYP---------LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD  699 (707)
Q Consensus       629 vafspdg~---------llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D  699 (707)
                      +.|+|.|+         .+++++.|++|++||+.      .   .+|+..|..|+.+    |.+++|+|+|++||+|+.|
T Consensus       407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~------~---gv~i~~f~kH~~p----VysvafS~~g~ylAsGs~d  473 (524)
T KOG0273|consen  407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE------S---GVPIHTLMKHQEP----VYSVAFSPNGRYLASGSLD  473 (524)
T ss_pred             EeecCCCCccCCCcCCceEEEeecCCeEEEEEcc------C---CceeEeeccCCCc----eEEEEecCCCcEEEecCCC
Confidence            99999764         78999999999999653      2   2468999999998    9999999999999999999


Q ss_pred             CcEEEEeC
Q 005235          700 SVIRLYCH  707 (707)
Q Consensus       700 g~IrlWdl  707 (707)
                      |.|.+|+.
T Consensus       474 g~V~iws~  481 (524)
T KOG0273|consen  474 GCVHIWST  481 (524)
T ss_pred             CeeEeccc
Confidence            99999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.1e-30  Score=261.22  Aligned_cols=264  Identities=15%  Similarity=0.241  Sum_probs=228.3

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      ..+++|..|.||+|||..+-.|++.+.+ .+.|.|+.|...   .|+++++|.+|++||+.+++..              
T Consensus       208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r---viisGSSDsTvrvWDv~tge~l--------------  270 (499)
T KOG0281|consen  208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER---VIVSGSSDSTVRVWDVNTGEPL--------------  270 (499)
T ss_pred             hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce---EEEecCCCceEEEEeccCCchh--------------
Confidence            4789999999999999999999998888 899999999764   5889999999999999887542              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee--eee-ccCCCeEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR--IPF-KLHGLPVS  544 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~-~~~~~V~~  544 (707)
                                          ..+++|...|..+.|+  ..++++++.|.   ++.+||+.......  ..+ +|.+.|+.
T Consensus       271 --------------------~tlihHceaVLhlrf~--ng~mvtcSkDr---siaVWdm~sps~it~rrVLvGHrAaVNv  325 (499)
T KOG0281|consen  271 --------------------NTLIHHCEAVLHLRFS--NGYMVTCSKDR---SIAVWDMASPTDITLRRVLVGHRAAVNV  325 (499)
T ss_pred             --------------------hHHhhhcceeEEEEEe--CCEEEEecCCc---eeEEEeccCchHHHHHHHHhhhhhheee
Confidence                                2356899999999997  56999999988   99999998765321  344 99999999


Q ss_pred             EEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235          545 SVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP  623 (707)
Q Consensus       545 v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~  623 (707)
                      |.|+.  +++++++ |++|++|++.+++.++++.+|...|.|+.+  .|+++++||.|.+|++||+..+ .+++.|.+|.
T Consensus       326 Vdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHE  400 (499)
T KOG0281|consen  326 VDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHE  400 (499)
T ss_pred             ecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-HHHHHHhchH
Confidence            99974  4888888 999999999999999999999999999988  4899999999999999999987 8999999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235          624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR  703 (707)
Q Consensus       624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir  703 (707)
                      .-|+++.|  +.+.++||+.||+|+|||+...-|-.......++..+..|++.    |..+.|  |...|++++.|.+|.
T Consensus       401 eLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgR----VFrLQF--D~fqIvsssHddtIL  472 (499)
T KOG0281|consen  401 ELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGR----VFRLQF--DEFQIISSSHDDTIL  472 (499)
T ss_pred             Hhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccce----eEEEee--cceEEEeccCCCeEE
Confidence            99999999  5678999999999999987655444333333467778888877    999999  556799999999999


Q ss_pred             EEeC
Q 005235          704 LYCH  707 (707)
Q Consensus       704 lWdl  707 (707)
                      |||+
T Consensus       473 iWdF  476 (499)
T KOG0281|consen  473 IWDF  476 (499)
T ss_pred             EEEc
Confidence            9985

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=3.3e-29  Score=247.30  Aligned_cols=287  Identities=18%  Similarity=0.206  Sum_probs=235.5

Q ss_pred             ccCCCCCCCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEE
Q 005235          281 LAYIPAPKPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYL  355 (707)
Q Consensus       281 ~~~~papk~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l  355 (707)
                      ...+-||.+.||||..     .|+|+|.+|+|++.          ||.++||+-+.......    .+++|-..+++|.+
T Consensus        33 ts~l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~----------Dr~I~LWnv~gdceN~~----~lkgHsgAVM~l~~   98 (338)
T KOG0265|consen   33 TSSLQAPIMLLPGHKGEIYTIKFHPDGSCFASGGS----------DRAIVLWNVYGDCENFW----VLKGHSGAVMELHG   98 (338)
T ss_pred             cccccchhhhcCCCcceEEEEEECCCCCeEeecCC----------cceEEEEecccccccee----eeccccceeEeeee
Confidence            3457789999999987     59999999999988          88887776554433221    12344444588888


Q ss_pred             cCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEE
Q 005235          356 CPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVL  434 (707)
Q Consensus       356 ~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~ll  434 (707)
                      .++.                             +.++++|.|.+|+.||+++|++++.++. ...|+++.-+.-|...+.
T Consensus        99 ~~d~-----------------------------s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~  149 (338)
T KOG0265|consen   99 MRDG-----------------------------SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVC  149 (338)
T ss_pred             ccCC-----------------------------CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEE
Confidence            7544                             6999999999999999999999999988 788888886656643333


Q ss_pred             EEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC
Q 005235          435 AVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP  514 (707)
Q Consensus       435 a~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~  514 (707)
                      +++.|++++|||+.....                                   ..+......+++++|...+..+.+|+-
T Consensus       150 SgsdD~t~kl~D~R~k~~-----------------------------------~~t~~~kyqltAv~f~d~s~qv~sggI  194 (338)
T KOG0265|consen  150 SGSDDGTLKLWDIRKKEA-----------------------------------IKTFENKYQLTAVGFKDTSDQVISGGI  194 (338)
T ss_pred             ecCCCceEEEEeecccch-----------------------------------hhccccceeEEEEEecccccceeeccc
Confidence            445678888888765322                                   112244667899999999999999999


Q ss_pred             CCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC----CeEEEEEeCCCCC----eE
Q 005235          515 AGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK----QRLIKKLETGLKE----VS  584 (707)
Q Consensus       515 dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~----~~~~~~l~~~~~~----I~  584 (707)
                      |+   .|++||+++.... ..+ +|...|+.+..+|+|.++.+-+ |.++++||++-    +++++.+.+|...    ..
T Consensus       195 dn---~ikvWd~r~~d~~-~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL  270 (338)
T KOG0265|consen  195 DN---DIKVWDLRKNDGL-YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL  270 (338)
T ss_pred             cC---ceeeeccccCcce-EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence            88   9999999999887 788 9999999999999999999988 99999999874    5678888876532    56


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          585 SIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       585 sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      .++|+|+++.+.+|+.|+.+++||.... ..+..+.+|.+.|++++|||..++|.+|+.|.+|++=
T Consensus       271 ~cswsp~~~~i~ags~dr~vyvwd~~~r-~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  271 KCSWSPNGTKITAGSADRFVYVWDTTSR-RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             eeeccCCCCccccccccceEEEeecccc-cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence            7799999999999999999999999765 6788899999999999999999999999999998763

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=9.1e-29  Score=276.51  Aligned_cols=272  Identities=22%  Similarity=0.290  Sum_probs=233.7

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      .|..++..+++++.|+.+++|++.+++  .++.+.. ...|.+++|+|++. .+++++.|.+|+||++....        
T Consensus       166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~--------  236 (456)
T KOG0266|consen  166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDG--------  236 (456)
T ss_pred             EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-EEEEecCCceEEEeeccCCC--------
Confidence            355566789999999999999998777  6666543 88999999999994 78888899999999973321        


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL  538 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~  538 (707)
                                               .....+.+|...|++++|+|+|+.+++|+.|+   +|+|||+.++.+. ..+ .|
T Consensus       237 -------------------------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~---tvriWd~~~~~~~-~~l~~h  287 (456)
T KOG0266|consen  237 -------------------------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDG---TVRIWDVRTGECV-RKLKGH  287 (456)
T ss_pred             -------------------------eEEEEecCCCCceEEEEecCCCCEEEEecCCC---cEEEEeccCCeEE-Eeeecc
Confidence                                     11234669999999999999999999999999   9999999998888 888 99


Q ss_pred             CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--EEEEEeCCCCC--eEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235          539 HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--LIKKLETGLKE--VSSIAIHPAGDNLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~~~~l~~~~~~--I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~  613 (707)
                      .+.|.+++|++++.+|++++ |+.|+|||+.++.  ++..+..+...  ++++.|+|+|.+|++++.|+.+++||+..+ 
T Consensus       288 s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-  366 (456)
T KOG0266|consen  288 SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-  366 (456)
T ss_pred             CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-
Confidence            99999999999999999998 9999999999998  56777766555  999999999999999999999999999977 


Q ss_pred             cceEEeecCCCC---EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-CCCCCCCeeEEEEcCC
Q 005235          614 KPYRVLKCHPKD---ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-TSSNGRGVMDCKFHPR  689 (707)
Q Consensus       614 ~~~~~l~~h~~~---I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-~~~~~~gV~~l~fspd  689 (707)
                      .....+.+|...   +.+..+++.+.++++|+.|+.|.+|+      +.+..   .+..+.+| ...    |..++|+|.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~------~~s~~---~~~~l~~h~~~~----~~~~~~~~~  433 (456)
T KOG0266|consen  367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD------SSSGG---ILQRLEGHSKAA----VSDLSSHPT  433 (456)
T ss_pred             cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEe------CCccc---hhhhhcCCCCCc----eeccccCCC
Confidence            778888888764   44556678999999999999999995      44433   36788899 666    999999999


Q ss_pred             CCEEEEEe--CCCcEEEEe
Q 005235          690 QPWLFTAG--ADSVIRLYC  706 (707)
Q Consensus       690 g~~L~s~g--~Dg~IrlWd  706 (707)
                      ..++++++  .|+.|++|.
T Consensus       434 ~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  434 ENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             cCeeeecCcCCCceEEEec
Confidence            99999998  799999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=2.3e-28  Score=235.49  Aligned_cols=286  Identities=17%  Similarity=0.133  Sum_probs=231.1

Q ss_pred             CCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCC
Q 005235          302 LEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRK  379 (707)
Q Consensus       302 ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~  379 (707)
                      .-+|+|++.          |..+  |-...+.|.|+++.-+..|       ..|.+.|+.+                   
T Consensus        10 ~viLvsA~Y----------DhTIRfWqa~tG~C~rTiqh~dsqV-------NrLeiTpdk~-------------------   53 (311)
T KOG0315|consen   10 PVILVSAGY----------DHTIRFWQALTGICSRTIQHPDSQV-------NRLEITPDKK-------------------   53 (311)
T ss_pred             ceEEEeccC----------cceeeeeehhcCeEEEEEecCccce-------eeEEEcCCcc-------------------
Confidence            357888665          4444  3344566778886544444       4555665542                   


Q ss_pred             CCcccCCCCcEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235          380 DLKPYPVACYLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR  456 (707)
Q Consensus       380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~  456 (707)
                                .|++|+ ...||+||+.++.  .+.+|.+ ...|.+|.|..+| +.+++++.||+++|||+.....    
T Consensus        54 ----------~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~----  117 (311)
T KOG0315|consen   54 ----------DLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSC----  117 (311)
T ss_pred             ----------hhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCccc----
Confidence                      555554 4569999999875  5788888 6999999999999 5899999999999999865311    


Q ss_pred             cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee
Q 005235          457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF  536 (707)
Q Consensus       457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~  536 (707)
                                                     .....|.++|++|..||+...|+++..+|   .|+|||+....+....+
T Consensus       118 -------------------------------qR~~~~~spVn~vvlhpnQteLis~dqsg---~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen  118 -------------------------------QRNYQHNSPVNTVVLHPNQTELISGDQSG---NIRVWDLGENSCTHELI  163 (311)
T ss_pred             -------------------------------chhccCCCCcceEEecCCcceEEeecCCC---cEEEEEccCCccccccC
Confidence                                           12447889999999999999999999988   99999999987762333


Q ss_pred             -ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          537 -KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ------RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       537 -~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~------~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                       .....|+++..+|+|..++++. .|.+++|++-..      .++.+++.|.+.|..+.+||++++||++|.|.+++||+
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn  243 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN  243 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence             6668899999999999999998 699999998754      56778899999999999999999999999999999999


Q ss_pred             CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE
Q 005235          609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF  686 (707)
Q Consensus       609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f  686 (707)
                      .+..-+.-..+.+|...++.++||.+|.+|++|+.|+++++|      ++..+..   +....||...    ..+++.
T Consensus       244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW------~~~~~k~---v~qy~gh~K~----~vc~~l  308 (311)
T KOG0315|consen  244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLW------DLSAGKE---VRQYQGHHKA----AVCVAL  308 (311)
T ss_pred             cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeec------ccccCce---eeecCCcccc----cEEEEe
Confidence            987646667889999999999999999999999999999999      5555554   7788888765    555554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2.6e-28  Score=246.45  Aligned_cols=298  Identities=13%  Similarity=0.134  Sum_probs=246.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc--cccceeeec
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR--RVKDLLHVE  465 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~--~~~~v~~~~  465 (707)
                      .+++|||.|....||++.+|..+..+.+ .+.|+|+.|+.+| ..|+++..+|.|+||...++......  ....+.=+.
T Consensus        77 ~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~  155 (399)
T KOG0296|consen   77 NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK  155 (399)
T ss_pred             ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence            4999999999999999999998877777 8999999999999 47778889999999999988543222  222222222


Q ss_pred             cc-----ccccCCCCcEEEEecCC-ccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--c
Q 005235          466 TP-----TAPDDNMASIVSWLQHD-KLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--K  537 (707)
Q Consensus       466 ~~-----~~~~~~d~~i~iW~~~~-~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~  537 (707)
                      +.     ++.|+.||.+..|.++. .....+.+|..++++=.|.|+|+.++++..||   +|++|++.+++.. ..+  .
T Consensus       156 WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg---ti~~Wn~ktg~p~-~~~~~~  231 (399)
T KOG0296|consen  156 WHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG---TIIVWNPKTGQPL-HKITQA  231 (399)
T ss_pred             ecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc---eEEEEecCCCcee-EEeccc
Confidence            22     78899999999999998 44556889999999999999999999999999   9999999999776 555  3


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC--------CCCCeEEEEEcC---CCCEEEEEECCCcEE
Q 005235          538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET--------GLKEVSSIAIHP---AGDNLIVGSREGKLC  605 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~--------~~~~I~sl~~sp---dg~~L~sGs~Dg~I~  605 (707)
                      ......++.++..+..++.|+ ++.+++.+..+++.+..+.+        +...+.|+.+.|   .-.+.|+|+.||+|.
T Consensus       232 e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~  311 (399)
T KOG0296|consen  232 EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIA  311 (399)
T ss_pred             ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEE
Confidence            456778899999999999888 89999999999988877663        223345555544   446789999999999


Q ss_pred             EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEE
Q 005235          606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCK  685 (707)
Q Consensus       606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~  685 (707)
                      |||+... ++.+.+ .|..+|..+.|-+ ..+|++++.+|.|+.||.      +++.+   +.++.||...    |.+++
T Consensus       312 iyD~a~~-~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDa------RtG~l---~~~y~GH~~~----Il~f~  375 (399)
T KOG0296|consen  312 IYDLAAS-TLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDA------RTGQL---KFTYTGHQMG----ILDFA  375 (399)
T ss_pred             EEecccc-hhheec-cCCCceEEEEEcC-cchheeeccCceEEeeec------cccce---EEEEecCchh----eeEEE
Confidence            9999876 555544 4888999999998 778999999999999954      44544   8899999987    99999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeC
Q 005235          686 FHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       686 fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .+|+.++++|+|.|++.+||+.
T Consensus       376 ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  376 LSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             EcCCCcEEEEecCCCeEEEEec
Confidence            9999999999999999999974

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=3.5e-28  Score=246.51  Aligned_cols=270  Identities=20%  Similarity=0.283  Sum_probs=223.3

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCC--ccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPE--LPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~--~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      ...+++|+.||++|||+. .|++..++.+ .++|.+++|.-..+  ..+++++.|.++++|.++.++....         
T Consensus       115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~---------  184 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK---------  184 (423)
T ss_pred             CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh---------
Confidence            578999999999999995 6888888887 88999888854331  2489999999999999876643211         


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC---------------
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK---------------  529 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~---------------  529 (707)
                                           ......+|...|-+|+..++|..|++|+.|.   .|.||+....               
T Consensus       185 ---------------------~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~---~lkiWs~~~~~~~~~E~~s~~rrk~  240 (423)
T KOG0313|consen  185 ---------------------ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT---MLKIWSVETDEEDELESSSNRRRKK  240 (423)
T ss_pred             ---------------------HHhHhcccccceeEEEecCCCCeEEeecccc---eeeecccCCCccccccccchhhhhh
Confidence                                 0111339999999999999999999999998   9999993211               


Q ss_pred             ---------ceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 005235          530 ---------LSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG  598 (707)
Q Consensus       530 ---------~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG  598 (707)
                               +.....+ +|..+|.+|.|++ ...+++++ |.+|+.||+.++.++.++.+. ..++|++.+|..++||+|
T Consensus       241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~g  318 (423)
T KOG0313|consen  241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASG  318 (423)
T ss_pred             hhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeec
Confidence                     0111344 8999999999998 55677777 999999999999999888866 789999999999999999


Q ss_pred             ECCCcEEEEECCCCC--cceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235          599 SREGKLCWFDMDLSS--KPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS  675 (707)
Q Consensus       599 s~Dg~I~vwDl~~~~--~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~  675 (707)
                      +.|..|++||.+++.  .+..+|.+|...|.+|.|||... +|+|||.|+++++||++      +..  .|+..+.+|..
T Consensus       319 ssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR------S~k--~plydI~~h~D  390 (423)
T KOG0313|consen  319 SSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR------STK--APLYDIAGHND  390 (423)
T ss_pred             CCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec------cCC--CcceeeccCCc
Confidence            999999999998754  45678899999999999999765 88999999999999654      322  26899999998


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       676 ~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .    |.++.|.. +..|+|||+|.+|+++.
T Consensus       391 K----vl~vdW~~-~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  391 K----VLSVDWNE-GGLIVSGGADNKLRIFK  416 (423)
T ss_pred             e----EEEEeccC-CceEEeccCcceEEEec
Confidence            8    99999974 56899999999999974

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-28  Score=262.86  Aligned_cols=263  Identities=17%  Similarity=0.216  Sum_probs=229.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT  468 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~  468 (707)
                      .++++-..|.|.||+.+|...++.++. .-+|.+..|-+..+ .+++++.|..|+||+..+++..               
T Consensus        27 w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~ekV---------------   90 (794)
T KOG0276|consen   27 WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGEKV---------------   90 (794)
T ss_pred             eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccc-eEEEecCCceEEEEecccceee---------------
Confidence            666778899999999999999999998 78999999998874 7889999999999998886432               


Q ss_pred             cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEE
Q 005235          469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVF  547 (707)
Q Consensus       469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~f  547 (707)
                                         ..+..|..-|.|++.||.-.++++++.|-   .|++|+....-.+.+.| +|..-|++++|
T Consensus        91 -------------------~~FeAH~DyIR~iavHPt~P~vLtsSDDm---~iKlW~we~~wa~~qtfeGH~HyVMqv~f  148 (794)
T KOG0276|consen   91 -------------------KTFEAHSDYIRSIAVHPTLPYVLTSSDDM---TIKLWDWENEWACEQTFEGHEHYVMQVAF  148 (794)
T ss_pred             -------------------EEeeccccceeeeeecCCCCeEEecCCcc---EEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence                               24568999999999999999999999998   99999999887665888 99999999999


Q ss_pred             eCC-CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235          548 HPT-RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG--DNLIVGSREGKLCWFDMDLSSKPYRVLKCHP  623 (707)
Q Consensus       548 spd-~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~  623 (707)
                      .|. .+.|++++ |++|+||.+....+..+|.+|...|+|+++-+.|  .+|++|+.|..|+|||.++. .++++|.+|.
T Consensus       149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt  227 (794)
T KOG0276|consen  149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHT  227 (794)
T ss_pred             cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhccc
Confidence            995 56788888 9999999999999999999999999999998866  59999999999999999987 8999999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235          624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR  703 (707)
Q Consensus       624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir  703 (707)
                      ..|..+.|||.-++++|||.||+|+|||..+|.-         ..+|.-.-..    |++++-++.+..++.|...|.|.
T Consensus       228 ~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l---------E~tLn~gleR----vW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  228 NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL---------EKTLNYGLER----VWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             ccceEEEecCCCcEEEEecCCccEEEecCcceeh---------hhhhhcCCce----EEEEeecCCCCeEEEeccCCcEE
Confidence            9999999999999999999999999998776541         2223322233    89999888888888888777664


Q ss_pred             E
Q 005235          704 L  704 (707)
Q Consensus       704 l  704 (707)
                      +
T Consensus       295 v  295 (794)
T KOG0276|consen  295 V  295 (794)
T ss_pred             E
Confidence            3

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.2e-28  Score=265.32  Aligned_cols=266  Identities=17%  Similarity=0.270  Sum_probs=232.2

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      +..++++| ..+.|+||+..+++|++++... .+.|..|.|.+ .+++.+...|.+.++|+.+....             
T Consensus       384 d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l~-------------  447 (888)
T KOG0306|consen  384 DSILLASG-AGESIKIWNRDTLKCIRTITCG-YILASKFVPGD-RYIVLGTKNGELQVFDLASASLV-------------  447 (888)
T ss_pred             Cceeeeec-CCCcEEEEEccCcceeEEeccc-cEEEEEecCCC-ceEEEeccCCceEEEEeehhhhh-------------
Confidence            33455554 4568999999999999999876 88999999988 58889999999999997654221             


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce----e--------ee
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS----H--------RI  534 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~----~--------~~  534 (707)
                                           .....|.+.|.+++.+|++..+++|+.|.   +|++|++.--..    +        ..
T Consensus       448 ---------------------Eti~AHdgaIWsi~~~pD~~g~vT~saDk---tVkfWdf~l~~~~~gt~~k~lsl~~~r  503 (888)
T KOG0306|consen  448 ---------------------ETIRAHDGAIWSISLSPDNKGFVTGSADK---TVKFWDFKLVVSVPGTQKKVLSLKHTR  503 (888)
T ss_pred             ---------------------hhhhccccceeeeeecCCCCceEEecCCc---EEEEEeEEEEeccCcccceeeeeccce
Confidence                                 12448999999999999999999999988   999999742111    1        02


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235          535 PFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       535 ~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~  613 (707)
                      .+.....|.|+.+|||+++|+++- |++|+||-+.+-+..-.|.+|.-+|.||++|||+..+++||.|+.|++|-++-+ 
T Consensus       504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-  582 (888)
T KOG0306|consen  504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-  582 (888)
T ss_pred             EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc-
Confidence            335577899999999999999998 999999999999999999999999999999999999999999999999999987 


Q ss_pred             cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE
Q 005235          614 KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL  693 (707)
Q Consensus       614 ~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L  693 (707)
                      .+-+.+-+|...|.+|.|-|...+|.+||.|+.|+-||+..+.         .+..+.+|...    |++++.+|+|.++
T Consensus       583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe---------~iq~L~~H~~e----v~cLav~~~G~~v  649 (888)
T KOG0306|consen  583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE---------EIQKLDGHHSE----VWCLAVSPNGSFV  649 (888)
T ss_pred             hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh---------hheeeccchhe----eeeeEEcCCCCeE
Confidence            7889999999999999999999999999999999999765432         47899999988    9999999999999


Q ss_pred             EEEeCCCcEEEEe
Q 005235          694 FTAGADSVIRLYC  706 (707)
Q Consensus       694 ~s~g~Dg~IrlWd  706 (707)
                      +|+|.|.+||+|.
T Consensus       650 vs~shD~sIRlwE  662 (888)
T KOG0306|consen  650 VSSSHDKSIRLWE  662 (888)
T ss_pred             EeccCCceeEeee
Confidence            9999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=4.2e-28  Score=239.54  Aligned_cols=269  Identities=19%  Similarity=0.254  Sum_probs=229.0

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCC-CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVES-GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~t-g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      |.+++..++|||.|..|.+|++.. -+-..++++ .++|..+.|.+|+ ..+++++.|.+|+.||..+|...        
T Consensus        55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~~~--------  125 (338)
T KOG0265|consen   55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGKRI--------  125 (338)
T ss_pred             ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-CEEEEecCCceEEEEecccceee--------
Confidence            555678999999999999999642 233344555 8999999999999 48999999999999998887432        


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCE-EEEEeCCCCccEEEEEECCCCceeeeeeccCC
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDY-LSTVMPAGESRAIFMHQLSKKLSHRIPFKLHG  540 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~-lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~  540 (707)
                                                .....|..-|+.+.-+.-|.. +.+++.|+   ++++||+++.... ..+..+-
T Consensus       126 --------------------------rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~---t~kl~D~R~k~~~-~t~~~ky  175 (338)
T KOG0265|consen  126 --------------------------RKHKGHTSFVNSLDPSRRGPQLVCSGSDDG---TLKLWDIRKKEAI-KTFENKY  175 (338)
T ss_pred             --------------------------ehhccccceeeecCccccCCeEEEecCCCc---eEEEEeecccchh-hccccce
Confidence                                      124578888888886666654 55667766   9999999988776 6777788


Q ss_pred             CeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC---CCcce
Q 005235          541 LPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL---SSKPY  616 (707)
Q Consensus       541 ~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~---~~~~~  616 (707)
                      .++++.|..++..+++|. |+.|++||++.+....++.+|...|+.|..+|+|.++.+-+.|.++++||++.   +.+++
T Consensus       176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v  255 (338)
T KOG0265|consen  176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV  255 (338)
T ss_pred             eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence            899999999999999999 99999999999999999999999999999999999999999999999999975   34568


Q ss_pred             EEeecCCC----CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235          617 RVLKCHPK----DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW  692 (707)
Q Consensus       617 ~~l~~h~~----~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~  692 (707)
                      +.+.+|..    ....++|+|++..+.+|+.|..+++||.      ....   .+..|.||.+.    |.+++|||..++
T Consensus       256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~------~~r~---~lyklpGh~gs----vn~~~Fhp~e~i  322 (338)
T KOG0265|consen  256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT------TSRR---ILYKLPGHYGS----VNEVDFHPTEPI  322 (338)
T ss_pred             EEeecchhhhhhhcceeeccCCCCccccccccceEEEeec------cccc---EEEEcCCccee----EEEeeecCCCcE
Confidence            88887753    4567899999999999999999999954      3333   37889999998    999999999999


Q ss_pred             EEEEeCCCcEEE
Q 005235          693 LFTAGADSVIRL  704 (707)
Q Consensus       693 L~s~g~Dg~Irl  704 (707)
                      |.+++.|.+|.+
T Consensus       323 ils~~sdk~i~l  334 (338)
T KOG0265|consen  323 ILSCSSDKTIYL  334 (338)
T ss_pred             EEEeccCceeEe
Confidence            999999999987

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-28  Score=250.79  Aligned_cols=269  Identities=20%  Similarity=0.287  Sum_probs=218.6

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeE---EEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRC---LRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~---l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      |+.++.++|++|.|.+..||.+.....   .+++.+ ..+|..+.||||. +++++++.+..+.+||+.+|+....    
T Consensus       232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~~~~----  306 (519)
T KOG0293|consen  232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDLRHL----  306 (519)
T ss_pred             EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCcchhhhh----
Confidence            556667999999999999999865433   455555 8899999999999 5899999999999999988754210    


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--c
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--K  537 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~  537 (707)
                                                   ...+|...+.+++|.|||..|++|++|+   ++..||+......  ..  -
T Consensus       307 -----------------------------y~~~~~~S~~sc~W~pDg~~~V~Gs~dr---~i~~wdlDgn~~~--~W~gv  352 (519)
T KOG0293|consen  307 -----------------------------YPSGLGFSVSSCAWCPDGFRFVTGSPDR---TIIMWDLDGNILG--NWEGV  352 (519)
T ss_pred             -----------------------------cccCcCCCcceeEEccCCceeEecCCCC---cEEEecCCcchhh--ccccc
Confidence                                         1123567899999999999999999988   9999999876432  22  2


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235          538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                      ....|.+++..+||+++++.+ |..|++|+..+......+..+ .+|+++++|.+|.++++.-.+..+.+||+... +.+
T Consensus       353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv  430 (519)
T KOG0293|consen  353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEEN-KLV  430 (519)
T ss_pred             ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchh-hHH
Confidence            235689999999999988766 999999999877665555444 78999999999999999999999999999955 778


Q ss_pred             EEeecCCCC--EEEEEEcC-CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-E
Q 005235          617 RVLKCHPKD--ITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-W  692 (707)
Q Consensus       617 ~~l~~h~~~--I~~vafsp-dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~  692 (707)
                      ..+.||...  |..-+|-- +..++||||.|+.|+|||..      ++.   ++.+|.||...    |++|+|+|..+ .
T Consensus       431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~------sgk---ll~~LsGHs~~----vNcVswNP~~p~m  497 (519)
T KOG0293|consen  431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI------SGK---LLAVLSGHSKT----VNCVSWNPADPEM  497 (519)
T ss_pred             HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc------CCc---eeEeecCCcce----eeEEecCCCCHHH
Confidence            888888753  33445644 44799999999999999643      332   58999999988    99999999887 5


Q ss_pred             EEEEeCCCcEEEEe
Q 005235          693 LFTAGADSVIRLYC  706 (707)
Q Consensus       693 L~s~g~Dg~IrlWd  706 (707)
                      +||||.||+||||-
T Consensus       498 ~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  498 FASASDDGTIRIWG  511 (519)
T ss_pred             hhccCCCCeEEEec
Confidence            79999999999995

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1e-28  Score=271.21  Aligned_cols=241  Identities=17%  Similarity=0.233  Sum_probs=213.5

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ...|.+++|+|.. ..++++-.+|.|++||..-+..                                  ...+..|.++
T Consensus         9 SsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tl----------------------------------i~rFdeHdGp   53 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTL----------------------------------IDRFDEHDGP   53 (1202)
T ss_pred             cccccceecCCCC-CEEEEeecCceeeeehhhhhhH----------------------------------HhhhhccCCc
Confidence            5678999999998 4788899999999999765421                                  1125589999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~  574 (707)
                      |..|+|||.+..|++|+.|-   .|+||+....++. .++ +|-.-|..+.||+.-++|++++ |.+||||+.++++++.
T Consensus        54 VRgv~FH~~qplFVSGGDDy---kIkVWnYk~rrcl-ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia  129 (1202)
T KOG0292|consen   54 VRGVDFHPTQPLFVSGGDDY---KIKVWNYKTRRCL-FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA  129 (1202)
T ss_pred             cceeeecCCCCeEEecCCcc---EEEEEecccceeh-hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE
Confidence            99999999999999999988   9999999999998 777 9999999999999999999999 7999999999999999


Q ss_pred             EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC----------------------------cceEEeecCCCCE
Q 005235          575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS----------------------------KPYRVLKCHPKDI  626 (707)
Q Consensus       575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~----------------------------~~~~~l~~h~~~I  626 (707)
                      .+.+|...|.|..|||..+.++++|-|.+|+|||+.--.                            .....+.+|...|
T Consensus       130 vltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV  209 (1202)
T KOG0292|consen  130 VLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV  209 (1202)
T ss_pred             EEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc
Confidence            999999999999999999999999999999999985210                            1234678999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          627 TNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       627 ~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      +-++|||.-++|+||++|..|++|.+.      ... ...+.+.+||.+.    |.++-|||.+..|+|.|.|++|||||
T Consensus       210 NwaAfhpTlpliVSG~DDRqVKlWrmn------etK-aWEvDtcrgH~nn----Vssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  210 NWAAFHPTLPLIVSGADDRQVKLWRMN------ETK-AWEVDTCRGHYNN----VSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             ceEEecCCcceEEecCCcceeeEEEec------ccc-ceeehhhhcccCC----cceEEecCccceeEecCCCccEEEEe
Confidence            999999999999999999999999543      221 1246788999998    99999999999999999999999999


Q ss_pred             C
Q 005235          707 H  707 (707)
Q Consensus       707 l  707 (707)
                      +
T Consensus       279 m  279 (1202)
T KOG0292|consen  279 M  279 (1202)
T ss_pred             c
Confidence            6

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=6e-29  Score=253.87  Aligned_cols=259  Identities=15%  Similarity=0.227  Sum_probs=223.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc-hhccc-ccceeeec
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE-EEQRR-VKDLLHVE  465 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~-~~~~~-~~~v~~~~  465 (707)
                      ..|++|+..|.+.+|+..+-..-..++. +++|.++.|++++ ..++++..+|.|++|++.-... .+..+ ...|.+++
T Consensus       109 RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdla  187 (464)
T KOG0284|consen  109 RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLA  187 (464)
T ss_pred             ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchhhhHHhhHhhhhhhheec
Confidence            3799999999999999633221111122 8999999999999 4888999999999999876543 33444 47888888


Q ss_pred             cc-----ccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc
Q 005235          466 TP-----TAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL  538 (707)
Q Consensus       466 ~~-----~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~  538 (707)
                      |+     +++++.|++|++|+...... .++.+|.-.|++++|||.-..+|+++.|.   .|++||..++.+. .++ .|
T Consensus       188 fSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn---lVKlWDprSg~cl-~tlh~H  263 (464)
T KOG0284|consen  188 FSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN---LVKLWDPRSGSCL-ATLHGH  263 (464)
T ss_pred             cCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc---eeEeecCCCcchh-hhhhhc
Confidence            88     89999999999999875544 45789999999999999999999999988   9999999999998 888 99


Q ss_pred             CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcce
Q 005235          539 HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                      +..|..+.|+|++++|++++ |..+++||+++.+.+.++.+|...+++++|||-. .+|.+|+.||.|..|.+... .|+
T Consensus       264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~  342 (464)
T KOG0284|consen  264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPL  342 (464)
T ss_pred             cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc-ccc
Confidence            99999999999999999999 9999999999888899999999999999999965 67888999999999999854 444


Q ss_pred             EEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          617 RVL-KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       617 ~~l-~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      ..+ .+|...|++++|||-|.+||+|+.|.++++|.-.
T Consensus       343 ~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  343 GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            433 5899999999999999999999999999999543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-28  Score=246.77  Aligned_cols=278  Identities=18%  Similarity=0.260  Sum_probs=235.7

Q ss_pred             CCCCCCCccc-----cCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccc
Q 005235          288 KPKLPGHEES-----YNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVR  360 (707)
Q Consensus       288 k~~lpgh~~s-----ynP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~  360 (707)
                      +..|.||..+     |.|..-..+++.+          |-.+  |.-.++...+.+.+|...       ..|+.+..   
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~----------d~tikv~D~~tg~~e~~LrGHt~s-------v~di~~~a---  160 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEALVVSASE----------DATIKVFDTETGELERSLRGHTDS-------VFDISFDA---  160 (406)
T ss_pred             hhhhhccccceeeeeeccCceEEEEecC----------CceEEEEEccchhhhhhhhccccc-------eeEEEEec---
Confidence            3467788764     8888777777654          4444  444455555555555544       47777663   


Q ss_pred             cceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCC-CeEEEEEec-CCcEEEEEEccCCCccEEEEEe
Q 005235          361 KKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVES-GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV  438 (707)
Q Consensus       361 k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t-g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~  438 (707)
                                                .+.+++++|.|=.+++||..+ .+|++.+.+ ...|.+++|-|.|+ ++++++.
T Consensus       161 --------------------------~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~sr  213 (406)
T KOG0295|consen  161 --------------------------SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSR  213 (406)
T ss_pred             --------------------------CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeeccc
Confidence                                      345999999999999999886 566666655 78899999999995 8999999


Q ss_pred             CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc
Q 005235          439 GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES  518 (707)
Q Consensus       439 d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~  518 (707)
                      |.+|+.|++.++-.                                  ...+.+|...|..+..+.||..+|+++.|.  
T Consensus       214 D~tik~We~~tg~c----------------------------------v~t~~~h~ewvr~v~v~~DGti~As~s~dq--  257 (406)
T KOG0295|consen  214 DNTIKAWECDTGYC----------------------------------VKTFPGHSEWVRMVRVNQDGTIIASCSNDQ--  257 (406)
T ss_pred             ccceeEEeccccee----------------------------------EEeccCchHhEEEEEecCCeeEEEecCCCc--
Confidence            99999999887632                                  124668999999999999999999999988  


Q ss_pred             cEEEEEECCCCceeeeee-ccCCCeEEEEEeCC---------------CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCC
Q 005235          519 RAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT---------------RSIFFVST-KKNIRVYDLLKQRLIKKLETGLK  581 (707)
Q Consensus       519 ~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd---------------~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~  581 (707)
                       +|++|-+.+.++. ..+ .|..+|.|++|.|.               ++++++++ |++|++||+.++.++.+|.+|..
T Consensus       258 -tl~vW~~~t~~~k-~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn  335 (406)
T KOG0295|consen  258 -TLRVWVVATKQCK-AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN  335 (406)
T ss_pred             -eEEEEEeccchhh-hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc
Confidence             9999999999887 788 99999999999773               25788888 99999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          582 EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       582 ~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      ||..++|+|.|+||+++..|++|++||+.+. ++.+++..|..-|+++.|+.+.++++||+-|.++++|.
T Consensus       336 wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  336 WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            9999999999999999999999999999987 88999999999999999999999999999999999993

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=2.9e-28  Score=253.89  Aligned_cols=280  Identities=16%  Similarity=0.223  Sum_probs=229.9

Q ss_pred             CCCCCCCcc-----ccCC-CCCccCChh---hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCc
Q 005235          288 KPKLPGHEE-----SYNP-SLEYIPTQE---ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPR  358 (707)
Q Consensus       288 k~~lpgh~~-----synP-~ge~L~s~~---~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr  358 (707)
                      .+.++||..     -|.| .+.+|++.+   .+++|+.          ...+.+||+..+|...|       .++.|+  
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v----------y~~~~~lrtf~gH~k~V-------rd~~~s--  267 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV----------YDDRRCLRTFKGHRKPV-------RDASFN--  267 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEE----------ecCcceehhhhcchhhh-------hhhhcc--
Confidence            357889976     3777 788888854   4455552          23466788888887776       455555  


Q ss_pred             cccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEe
Q 005235          359 VRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV  438 (707)
Q Consensus       359 ~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~  438 (707)
                                                 ..+..++|+|.|+.|++||++||+|+..+..+..+.|+.|+|++...+++++.
T Consensus       268 ---------------------------~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~s  320 (503)
T KOG0282|consen  268 ---------------------------NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGS  320 (503)
T ss_pred             ---------------------------ccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecC
Confidence                                       44568999999999999999999999999999999999999999778889999


Q ss_pred             CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc
Q 005235          439 GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES  518 (707)
Q Consensus       439 d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~  518 (707)
                      ++.|+.||+.++...                                  .....|-+.|..+.|-++|.+|++.+.|+  
T Consensus       321 d~ki~~wDiRs~kvv----------------------------------qeYd~hLg~i~~i~F~~~g~rFissSDdk--  364 (503)
T KOG0282|consen  321 DKKIRQWDIRSGKVV----------------------------------QEYDRHLGAILDITFVDEGRRFISSSDDK--  364 (503)
T ss_pred             CCcEEEEeccchHHH----------------------------------HHHHhhhhheeeeEEccCCceEeeeccCc--
Confidence            999999998877421                                  12336889999999999999999999998  


Q ss_pred             cEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC---eEEEEEeCCC--CCeEEEEEcCC
Q 005235          519 RAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ---RLIKKLETGL--KEVSSIAIHPA  591 (707)
Q Consensus       519 ~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~---~~~~~l~~~~--~~I~sl~~spd  591 (707)
                       +++||+....-...... .......|+..+|+++++++-+ |+.|.+|.+...   ...+.+.+|.  +.-..+.||||
T Consensus       365 -s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD  443 (503)
T KOG0282|consen  365 -SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD  443 (503)
T ss_pred             -cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence             99999998876552222 4455677999999999999988 999999986532   2334566664  34677899999


Q ss_pred             CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 005235          592 GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFH  651 (707)
Q Consensus       592 g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd  651 (707)
                      |.+|++|+.||.+.+||..+. +.+..+++|..++..+.|||..+ .+|+|+.||.|++|+
T Consensus       444 G~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  444 GRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCeEEeecCCccEEEeechhh-hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999999999999987 88999999999999999999765 899999999999994

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-28  Score=250.63  Aligned_cols=278  Identities=17%  Similarity=0.255  Sum_probs=220.1

Q ss_pred             CCCCCcc-----ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCcccc
Q 005235          290 KLPGHEE-----SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK  361 (707)
Q Consensus       290 ~lpgh~~-----synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k  361 (707)
                      .|..|..     .||+.|+||||++.   .-.|...+.        ..+....+.-       +|...+..+.|+|+.+ 
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d--------~~~kl~~tlv-------gh~~~V~yi~wSPDdr-  282 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD--------VHFKLKKTLV-------GHSQPVSYIMWSPDDR-  282 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC--------cceeeeeeee-------cccCceEEEEECCCCC-
Confidence            4556665     69999999999665   222332110        1233333443       4444558889998875 


Q ss_pred             ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeC
Q 005235          362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVG  439 (707)
Q Consensus       362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d  439 (707)
                                                  ++++++.|..+++||+.||.+.+.+..  ...+.+++|+||| ..+++++.|
T Consensus       283 ----------------------------yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~d  333 (519)
T KOG0293|consen  283 ----------------------------YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPD  333 (519)
T ss_pred             ----------------------------eEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCC
Confidence                                        888889999999999999999998887  4889999999999 589999999


Q ss_pred             CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCcc
Q 005235          440 QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESR  519 (707)
Q Consensus       440 ~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~  519 (707)
                      +++..|++....                         +..|.-         .....|.+++.++||+++++++.|.   
T Consensus       334 r~i~~wdlDgn~-------------------------~~~W~g---------vr~~~v~dlait~Dgk~vl~v~~d~---  376 (519)
T KOG0293|consen  334 RTIIMWDLDGNI-------------------------LGNWEG---------VRDPKVHDLAITYDGKYVLLVTVDK---  376 (519)
T ss_pred             CcEEEecCCcch-------------------------hhcccc---------cccceeEEEEEcCCCcEEEEEeccc---
Confidence            999999975431                         122311         1124688999999999999999888   


Q ss_pred             EEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC--eEEEEEc-CCCCEE
Q 005235          520 AIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKE--VSSIAIH-PAGDNL  595 (707)
Q Consensus       520 ~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~--I~sl~~s-pdg~~L  595 (707)
                      .|++++..+.... ..+....+|++++.+.+++++++.- +..|++||+...+++.++.+|...  |-.-+|. -+..++
T Consensus       377 ~i~l~~~e~~~dr-~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi  455 (519)
T KOG0293|consen  377 KIRLYNREARVDR-GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI  455 (519)
T ss_pred             ceeeechhhhhhh-ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence            9999998877654 3346778999999999999988876 899999999999999999988755  2222343 234799


Q ss_pred             EEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 005235          596 IVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFH  651 (707)
Q Consensus       596 ~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd  651 (707)
                      ++||.|+.|+||+..++ +++.++.||...|++|+|+|..+ +|||||+||+|+||-
T Consensus       456 aSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  456 ASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             EecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence            99999999999999987 89999999999999999999776 899999999999993

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-27  Score=230.88  Aligned_cols=262  Identities=19%  Similarity=0.258  Sum_probs=216.6

Q ss_pred             eCCCcEEEEeCCCCeEEE---EEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccccc
Q 005235          395 STDGTVRIWEVESGRCLR---VLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPD  471 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~---~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~  471 (707)
                      ...|++.|-++..+.-+.   .+...+.+..|+|+++.+..+++++.||+++|||+.-..                    
T Consensus        35 ~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------------------   94 (311)
T KOG0277|consen   35 AGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------------------   94 (311)
T ss_pred             ccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------------------
Confidence            457889999986554444   444489999999999988889999999999999954321                    


Q ss_pred             CCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeC
Q 005235          472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHP  549 (707)
Q Consensus       472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fsp  549 (707)
                         +.|          .....|...|.++.|++ .+..+++++-|+   +|++|+.....+. .+| +|...|..++|+|
T Consensus        95 ---~Pi----------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~---TiKLW~~~r~~Sv-~Tf~gh~~~Iy~a~~sp  157 (311)
T KOG0277|consen   95 ---KPI----------HKFKEHKREVYSVDWNTVRRRIFLTSSWDG---TIKLWDPNRPNSV-QTFNGHNSCIYQAAFSP  157 (311)
T ss_pred             ---cch----------hHHHhhhhheEEeccccccceeEEeeccCC---ceEeecCCCCcce-EeecCCccEEEEEecCC
Confidence               111          23457999999999998 556788889998   9999999999998 899 9999999999999


Q ss_pred             CC-CEEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235          550 TR-SIFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       550 d~-~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      .- .+|++++ |+++++||++. |+.+ .+..|...|.|+.|+.- ...|++|+.|+.|+.||++.-..|+..+.+|.-+
T Consensus       158 ~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  158 HIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA  236 (311)
T ss_pred             CCCCeEEEccCCceEEEEEecCCCcee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence            64 5566666 99999999986 4444 48899889999999864 4678999999999999999988999999999999


Q ss_pred             EEEEEEcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEE
Q 005235          626 ITNVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR-QPWLFTAGADSVIR  703 (707)
Q Consensus       626 I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd-g~~L~s~g~Dg~Ir  703 (707)
                      |+.|.|||.. .+|||||.|-+++||+...     ...   .+.+..-|+..    |..+.|++. ..++|++|.|+.+.
T Consensus       237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~-----~ds---~~e~~~~HtEF----v~g~Dws~~~~~~vAs~gWDe~l~  304 (311)
T KOG0277|consen  237 VRKVKFSPHHASLLASASYDMTVRIWDPER-----QDS---AIETVDHHTEF----VCGLDWSLFDPGQVASTGWDELLY  304 (311)
T ss_pred             EEEEecCcchhhHhhhccccceEEeccccc-----chh---hhhhhhccceE----EeccccccccCceeeeccccccee
Confidence            9999999965 4999999999999995432     222   25566678887    999999985 45899999999999


Q ss_pred             EEe
Q 005235          704 LYC  706 (707)
Q Consensus       704 lWd  706 (707)
                      ||+
T Consensus       305 Vw~  307 (311)
T KOG0277|consen  305 VWN  307 (311)
T ss_pred             eec
Confidence            997

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=7.7e-27  Score=261.00  Aligned_cols=244  Identities=18%  Similarity=0.242  Sum_probs=208.9

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ...|.++.|+++|. .+++++.++.+++|++.....                                .....+.+|...
T Consensus       159 ~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~--------------------------------~~~~~l~~h~~~  205 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKS--------------------------------NLLRELSGHTRG  205 (456)
T ss_pred             cCceEEEEEcCCCC-eEEEccCCCcEEEeecccccc--------------------------------hhhccccccccc
Confidence            57899999999995 588888999999999744321                                011123589999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI  573 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~  573 (707)
                      |.+++|+|+|.++++++.|+   +|+|||+.. +... ..+ +|...|++++|+|+++++++|+ |++|+|||+.+++++
T Consensus       206 v~~~~fs~d~~~l~s~s~D~---tiriwd~~~~~~~~-~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~  281 (456)
T KOG0266|consen  206 VSDVAFSPDGSYLLSGSDDK---TLRIWDLKDDGRNL-KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV  281 (456)
T ss_pred             eeeeEECCCCcEEEEecCCc---eEEEeeccCCCeEE-EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE
Confidence            99999999999999999998   999999944 4565 788 9999999999999999999988 999999999999999


Q ss_pred             EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-ceEEeecCCCC--EEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK-PYRVLKCHPKD--ITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~-~~~~l~~h~~~--I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      .++.+|...|++++|+++|.+|++++.|+.|++||+.++.. +.+.+..+...  +++++|+|++.+|++++.|+++++|
T Consensus       282 ~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w  361 (456)
T KOG0266|consen  282 RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW  361 (456)
T ss_pred             EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence            99999999999999999999999999999999999998743 46777777665  9999999999999999999999999


Q ss_pred             ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ++      .....   +..+.+|... ...+.+...++.+.++++|+.|+.|.+|++
T Consensus       362 ~l------~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~  408 (456)
T KOG0266|consen  362 DL------RSGKS---VGTYTGHSNL-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDS  408 (456)
T ss_pred             Ec------cCCcc---eeeecccCCc-ceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence            54      43333   6778888763 123566667889999999999999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=3.6e-26  Score=273.35  Aligned_cols=270  Identities=13%  Similarity=0.181  Sum_probs=218.3

Q ss_pred             CCcEEEEeCCCCeEEEEEe------cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccc
Q 005235          397 DGTVRIWEVESGRCLRVLE------IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAP  470 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~------~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~  470 (707)
                      +|.+++|+..+.+....+.      +.+.|.+++|+|+++ .+++++.|+.|+||++........               
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~---------------  520 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR---------------  520 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc---------------
Confidence            6778899888766554443      267899999999994 788889999999999754210000               


Q ss_pred             cCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe
Q 005235          471 DDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH  548 (707)
Q Consensus       471 ~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs  548 (707)
                         +.         ........+...|.+++|++ .+.+|++++.|+   .|+|||+.++... ..+ .|.+.|.+++|+
T Consensus       521 ---~~---------~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg---~v~lWd~~~~~~~-~~~~~H~~~V~~l~~~  584 (793)
T PLN00181        521 ---DI---------HYPVVELASRSKLSGICWNSYIKSQVASSNFEG---VVQVWDVARSQLV-TEMKEHEKRVWSIDYS  584 (793)
T ss_pred             ---cc---------ccceEEecccCceeeEEeccCCCCEEEEEeCCC---eEEEEECCCCeEE-EEecCCCCCEEEEEEc
Confidence               00         00001223456799999987 478999999998   9999999988777 777 899999999999


Q ss_pred             C-CCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEc-CCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235          549 P-TRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIH-PAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       549 p-d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~s-pdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      | ++.+|++|+ |++|++||+.++..+..+..+ ..|.++.|+ ++|.+|++|+.||.|++||++....++..+.+|...
T Consensus       585 p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~  663 (793)
T PLN00181        585 SADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT  663 (793)
T ss_pred             CCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC
Confidence            7 678899888 999999999999888888765 679999995 579999999999999999998765577888999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          626 ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      |.+++|+ ++.+|++++.|++|+|||+....   ......++..+.+|...    +..++|+|++.+|++|+.||+|++|
T Consensus       664 V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~---~~~~~~~l~~~~gh~~~----i~~v~~s~~~~~lasgs~D~~v~iw  735 (793)
T PLN00181        664 VSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI---SGINETPLHSFMGHTNV----KNFVGLSVSDGYIATGSETNEVFVY  735 (793)
T ss_pred             EEEEEEe-CCCEEEEEECCCEEEEEeCCCCc---cccCCcceEEEcCCCCC----eeEEEEcCCCCEEEEEeCCCEEEEE
Confidence            9999997 67899999999999999764321   11122357889999887    9999999999999999999999999


Q ss_pred             eC
Q 005235          706 CH  707 (707)
Q Consensus       706 dl  707 (707)
                      +.
T Consensus       736 ~~  737 (793)
T PLN00181        736 HK  737 (793)
T ss_pred             EC
Confidence            73

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.2e-27  Score=251.60  Aligned_cols=237  Identities=20%  Similarity=0.255  Sum_probs=210.8

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ...|.+|.|+|.. ..++++-.+|.|.|||.++...                        ++          .+.-..-+
T Consensus        13 SdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtm------------------------Vk----------sfeV~~~P   57 (794)
T KOG0276|consen   13 SDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTM------------------------VK----------SFEVSEVP   57 (794)
T ss_pred             CCceeeeecCCCC-ceEEEeeecCeeEEEeccccee------------------------ee----------eeeecccc
Confidence            6789999999998 4788889999999999766411                        11          12234568


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC-eEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ-RLI  573 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~-~~~  573 (707)
                      |.+..|-+.-+++++|+.|.   .|+||+..+.... ..| .|..-|.+++.||..+++++++ |-+|++||.... .+.
T Consensus        58 vRa~kfiaRknWiv~GsDD~---~IrVfnynt~ekV-~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~  133 (794)
T KOG0276|consen   58 VRAAKFIARKNWIVTGSDDM---QIRVFNYNTGEKV-KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE  133 (794)
T ss_pred             hhhheeeeccceEEEecCCc---eEEEEecccceee-EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee
Confidence            88899999999999999999   9999999999998 999 9999999999999999999999 799999999875 788


Q ss_pred             EEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEE
Q 005235          574 KKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSY--PLFASCSDDCTAYVF  650 (707)
Q Consensus       574 ~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg--~llaSgs~Dg~I~Vw  650 (707)
                      +++.+|...|.+++|.|. .+.+|++|-|++|+||.+... .|..+|.+|...|++|.|-+.|  ++|+||++|.+|+||
T Consensus       134 qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW  212 (794)
T KOG0276|consen  134 QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW  212 (794)
T ss_pred             eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence            999999999999999995 478999999999999999876 8899999999999999998754  799999999999999


Q ss_pred             ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      |      ..+..   |+.+|.||+..    |..+.|||.-++|+|||.||++|||+
T Consensus       213 D------yQtk~---CV~TLeGHt~N----vs~v~fhp~lpiiisgsEDGTvriWh  255 (794)
T KOG0276|consen  213 D------YQTKS---CVQTLEGHTNN----VSFVFFHPELPIIISGSEDGTVRIWN  255 (794)
T ss_pred             e------cchHH---HHHHhhccccc----ceEEEecCCCcEEEEecCCccEEEec
Confidence            5      43443   58999999998    99999999999999999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=4.4e-26  Score=233.93  Aligned_cols=222  Identities=24%  Similarity=0.364  Sum_probs=192.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeecc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      ..+++++.||.|++|++.+++.+..+.. ...|.++.|++++  .+++++. ++.|.+|++.++..              
T Consensus        64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~--------------  127 (289)
T cd00200          64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKC--------------  127 (289)
T ss_pred             CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEE--------------
Confidence            4899999999999999999888877776 5689999999997  4555555 99999999764311              


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS  545 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v  545 (707)
                                          ...+..|...|.+++|++++.++++++.++   .|.+||+...... ..+ .+...+.++
T Consensus       128 --------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~d~~~~~~~-~~~~~~~~~i~~~  183 (289)
T cd00200         128 --------------------LTTLRGHTDWVNSVAFSPDGTFVASSSQDG---TIKLWDLRTGKCV-ATLTGHTGEVNSV  183 (289)
T ss_pred             --------------------EEEeccCCCcEEEEEEcCcCCEEEEEcCCC---cEEEEEccccccc-eeEecCccccceE
Confidence                                112336788999999999999999888777   9999999987776 667 777899999


Q ss_pred             EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235          546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK  624 (707)
Q Consensus       546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~  624 (707)
                      +|+|++..+++++ ++.|++||+.+++.+..+..+...+.+++|+|++.++++++.+|.|++||+.++ .+...+..|..
T Consensus       184 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~  262 (289)
T cd00200         184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQTLSGHTN  262 (289)
T ss_pred             EECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEEccccCC
Confidence            9999998888887 999999999999888888788889999999999989998888999999999876 67888889999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          625 DITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      .|.+++|+|++++|++++.||.|++|+
T Consensus       263 ~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         263 SVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999999999999999999999999993

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=4.5e-27  Score=236.38  Aligned_cols=235  Identities=20%  Similarity=0.244  Sum_probs=211.9

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|.||++.|.. ..+++++.|++|.|||+.++..                                  ...+.+|-..
T Consensus       151 lgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~L----------------------------------kltltGhi~~  195 (460)
T KOG0285|consen  151 LGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQL----------------------------------KLTLTGHIET  195 (460)
T ss_pred             cceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeE----------------------------------EEeecchhhe
Confidence            6899999999987 4788888999999999877622                                  1236689999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~  574 (707)
                      |..|++|+...|+++++.|+   .|+.||+...+.+ +.+ +|-..|.|++.||.-..|++|+ |.++||||+++...+.
T Consensus       196 vr~vavS~rHpYlFs~gedk---~VKCwDLe~nkvI-R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~  271 (460)
T KOG0285|consen  196 VRGVAVSKRHPYLFSAGEDK---QVKCWDLEYNKVI-RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH  271 (460)
T ss_pred             eeeeeecccCceEEEecCCC---eeEEEechhhhhH-HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence            99999999999999999988   9999999999888 777 9999999999999999999998 9999999999999999


Q ss_pred             EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235          575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV  654 (707)
Q Consensus       575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~  654 (707)
                      .+.+|..+|.++.+.|-...+++||.|++|++||+..+ +...++..|...|++++.||....|||+|.|. |+-|    
T Consensus       272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w----  345 (460)
T KOG0285|consen  272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQW----  345 (460)
T ss_pred             EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCcc-ceec----
Confidence            99999999999999999999999999999999999987 77888999999999999999999999999886 8899    


Q ss_pred             ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                        ++..+..   +..+.+|...    |++++...|+ ++++|+..|.|.+||
T Consensus       346 --~~p~g~f---~~nlsgh~~i----intl~~nsD~-v~~~G~dng~~~fwd  387 (460)
T KOG0285|consen  346 --KLPEGEF---LQNLSGHNAI----INTLSVNSDG-VLVSGGDNGSIMFWD  387 (460)
T ss_pred             --cCCccch---hhccccccce----eeeeeeccCc-eEEEcCCceEEEEEe
Confidence              5555544   6678999987    9999988775 789999999999997

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=9.6e-28  Score=241.86  Aligned_cols=265  Identities=19%  Similarity=0.239  Sum_probs=216.9

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      .|...+.+++||.||.|+|||+.+..|+++++. .+.|..|++...   .+++++.|.+|+.|.+....           
T Consensus        75 hp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~---~~~tvgdDKtvK~wk~~~~p-----------  140 (433)
T KOG0268|consen   75 HPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT---SFFTVGDDKTVKQWKIDGPP-----------  140 (433)
T ss_pred             CcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc---ceEEecCCcceeeeeccCCc-----------
Confidence            344446899999999999999999999999998 789999999883   59999999999999865420           


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL  541 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~  541 (707)
                                               .......+.+..+.-+..++.|||++.     .|.|||....... ..+ -....
T Consensus       141 -------------------------~~tilg~s~~~gIdh~~~~~~FaTcGe-----~i~IWD~~R~~Pv-~smswG~Dt  189 (433)
T KOG0268|consen  141 -------------------------LHTILGKSVYLGIDHHRKNSVFATCGE-----QIDIWDEQRDNPV-SSMSWGADS  189 (433)
T ss_pred             -------------------------ceeeeccccccccccccccccccccCc-----eeeecccccCCcc-ceeecCCCc
Confidence                                     011223456667777778889999987     8999999887776 667 55678


Q ss_pred             eEEEEEeCCCCEEE-EE-eCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe
Q 005235          542 PVSSVFHPTRSIFF-VS-TKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL  619 (707)
Q Consensus       542 V~~v~fspd~~~l~-v~-sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l  619 (707)
                      |.++.|+|....++ +| +|+.|.|||++++.+++++... ..-+.|+|+|.+-.+++|+.|..++.||++....|+...
T Consensus       190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~  268 (433)
T KOG0268|consen  190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH  268 (433)
T ss_pred             eeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhh
Confidence            99999999776554 44 3999999999999888877654 345789999999999999999999999999888999999


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235          620 KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD  699 (707)
Q Consensus       620 ~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D  699 (707)
                      .+|.++|.+|.|||.|+-|+|||.|.+|+||.+....   +..        .-|+. ..+.|.++.||.|.++|+|||.|
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~---SRd--------iYhtk-RMq~V~~Vk~S~Dskyi~SGSdd  336 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH---SRD--------IYHTK-RMQHVFCVKYSMDSKYIISGSDD  336 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecCCCc---chh--------hhhHh-hhheeeEEEEeccccEEEecCCC
Confidence            9999999999999999999999999999999654211   110        01221 12339999999999999999999


Q ss_pred             CcEEEEe
Q 005235          700 SVIRLYC  706 (707)
Q Consensus       700 g~IrlWd  706 (707)
                      +.||||.
T Consensus       337 ~nvRlWk  343 (433)
T KOG0268|consen  337 GNVRLWK  343 (433)
T ss_pred             cceeeee
Confidence            9999995

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=243.05  Aligned_cols=279  Identities=19%  Similarity=0.228  Sum_probs=211.5

Q ss_pred             CcEEEEEeCCCcEEEEeCCC----CeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235          388 CYLEYKGSTDGTVRIWEVES----GRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~t----g~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      +..+++||.|.+|++||...    .+..+.+.-  ...|++++|++.|+ .||+++.....+|+|-......-       
T Consensus       179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl~DRdG~~~~e-------  250 (641)
T KOG0772|consen  179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKLLDRDGFEIVE-------  250 (641)
T ss_pred             CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcceeEEccCCceeee-------
Confidence            35899999999999999863    223333333  67899999999995 78888888899998843321100       


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeeecc--
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPFKL--  538 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~--  538 (707)
                                ...|--.|-+     .....+|...++|.+|||.. ..|+|++.||   +++||++.....+...|++  
T Consensus       251 ----------~~KGDQYI~D-----m~nTKGHia~lt~g~whP~~k~~FlT~s~Dg---tlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  251 ----------FSKGDQYIRD-----MYNTKGHIAELTCGCWHPDNKEEFLTCSYDG---TLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             ----------eeccchhhhh-----hhccCCceeeeeccccccCcccceEEecCCC---cEEEEecCCchhheeEEeecc
Confidence                      0001101111     11256899999999999965 5799999999   9999999988877444422  


Q ss_pred             ----CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--E-EEEEeCCCC--CeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          539 ----HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--L-IKKLETGLK--EVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       539 ----~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~-~~~l~~~~~--~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                          .-.++.++|+|++++|++|. ||.|.+|+.....  + .+.-..|..  .|+||+||++|++|++-+.|+++++||
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence                34788999999999999988 9999999986531  1 222335554  799999999999999999999999999


Q ss_pred             CCCCCcceEEeecCC--CCEEEEEEcCCCCEEEEEeC------CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235          609 MDLSSKPYRVLKCHP--KDITNVAFHRSYPLFASCSD------DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG  680 (707)
Q Consensus       609 l~~~~~~~~~l~~h~--~~I~~vafspdg~llaSgs~------Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g  680 (707)
                      ++...+++.+..+-.  .+-+.++|||+.++|++|+.      .|++.+|+.+++.      .   +..+.-.+..    
T Consensus       393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d------~---v~ki~i~~aS----  459 (641)
T KOG0772|consen  393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD------T---VYKIDISTAS----  459 (641)
T ss_pred             ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee------e---EEEecCCCce----
Confidence            998888887766543  34678999999999999863      4789999766443      2   4555444555    


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          681 VMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       681 V~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      |..+.|||.-+.|+.++.||++++|
T Consensus       460 vv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  460 VVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             EEEEeecchhhheeeecCCCceEEE
Confidence            9999999999999999999999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.2e-26  Score=219.06  Aligned_cols=267  Identities=16%  Similarity=0.179  Sum_probs=222.4

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      -|..++++.++++.|.+|++|+...|.+++++.+ ...|..++.+.|. ..+++++.|..|.+||+.+|..         
T Consensus        24 ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv---------   93 (307)
T KOG0316|consen   24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKV---------   93 (307)
T ss_pred             EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCee---------
Confidence            3677889999999999999999999999999998 7889999999988 4799999999999999888632         


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccC
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLH  539 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~  539 (707)
                                               ...+.+|.+.|+.+.|+.+...+++|+-|.   ++++||.+...... +.| ...
T Consensus        94 -------------------------~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~---s~r~wDCRS~s~ePiQildea~  145 (307)
T KOG0316|consen   94 -------------------------DRRFRGHLAQVNTVRFNEESSVVASGSFDS---SVRLWDCRSRSFEPIQILDEAK  145 (307)
T ss_pred             -------------------------eeecccccceeeEEEecCcceEEEeccccc---eeEEEEcccCCCCccchhhhhc
Confidence                                     123568999999999999999999999988   99999998776532 334 677


Q ss_pred             CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE
Q 005235          540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV  618 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~  618 (707)
                      ..|.++...  +..|++|+ ||++|.||++.|++.....+|  +|+|+.|+++|+.+++++.|++|++.|-.++ ++++.
T Consensus       146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~s  220 (307)
T KOG0316|consen  146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKS  220 (307)
T ss_pred             CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchh-HHHHH
Confidence            888888876  55677777 999999999999988777655  7999999999999999999999999999988 88899


Q ss_pred             eecCCCCE--EEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235          619 LKCHPKDI--TNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA  696 (707)
Q Consensus       619 l~~h~~~I--~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~  696 (707)
                      +++|...-  ..++++.....+++||+||.|++|      ||.....   +..+..|...   -|.++++||.-.-|+++
T Consensus       221 YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w------dLvd~~~---~sk~~~~~~v---~v~dl~~hp~~~~f~~A  288 (307)
T KOG0316|consen  221 YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW------DLVDETQ---ISKLSVVSTV---IVTDLSCHPTMDDFITA  288 (307)
T ss_pred             hcccccceeeeeeeecccceeEEeccCCceEEEE------Eecccee---eeeeccCCce---eEEeeecccCccceeEe
Confidence            99997643  355677788899999999999999      5555544   4455555432   27999999999988888


Q ss_pred             eCCCcEEEE
Q 005235          697 GADSVIRLY  705 (707)
Q Consensus       697 g~Dg~IrlW  705 (707)
                      +.. .+.+|
T Consensus       289 ~~~-~~~~~  296 (307)
T KOG0316|consen  289 TGH-GDLFW  296 (307)
T ss_pred             cCC-ceece
Confidence            744 44444

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.1e-25  Score=218.47  Aligned_cols=267  Identities=15%  Similarity=0.227  Sum_probs=220.5

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      .++..+++|+.|+++.||++..++.+..+..   .+.|-.++|+|.....+++++.|.+|++||...+.+.         
T Consensus        30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~---------  100 (313)
T KOG1407|consen   30 CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT---------  100 (313)
T ss_pred             ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE---------
Confidence            3446899999999999999998876665544   6789999999987667888999999999998776432         


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCe
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLP  542 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V  542 (707)
                                                ..+...+.-..++|+|+|.+++++..|.   .|.+.|.++.+.. ......-.+
T Consensus       101 --------------------------~~i~~~~eni~i~wsp~g~~~~~~~kdD---~it~id~r~~~~~-~~~~~~~e~  150 (313)
T KOG1407|consen  101 --------------------------ARIETKGENINITWSPDGEYIAVGNKDD---RITFIDARTYKIV-NEEQFKFEV  150 (313)
T ss_pred             --------------------------EEeeccCcceEEEEcCCCCEEEEecCcc---cEEEEEeccccee-ehhccccee
Confidence                                      1223344556789999999999999988   9999999988776 555667778


Q ss_pred             EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235          543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                      .-++|+-++.+|+..+ -|+|.|.....-+++.+++.|.....||.|+|+|++||+|+.|..+.+||++.. .+.+.+..
T Consensus       151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isR  229 (313)
T KOG1407|consen  151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISR  229 (313)
T ss_pred             eeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeecc
Confidence            8899998777777766 599999999999999999999999999999999999999999999999999866 78888999


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC--
Q 005235          622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD--  699 (707)
Q Consensus       622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D--  699 (707)
                      +.-+|+.+.||.+|++||+||.|-.|-|=++.      ++..   +..+. +.++    ...|+|||..++||.++.|  
T Consensus       230 ldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve------tGd~---~~eI~-~~~~----t~tVAWHPk~~LLAyA~ddk~  295 (313)
T KOG1407|consen  230 LDWPVRTLSFSHDGRMLASASEDHFIDIAEVE------TGDR---VWEIP-CEGP----TFTVAWHPKRPLLAYACDDKD  295 (313)
T ss_pred             ccCceEEEEeccCcceeeccCccceEEeEecc------cCCe---EEEee-ccCC----ceeEEecCCCceeeEEecCCC
Confidence            99999999999999999999999999887443      3332   33333 3333    7899999999999888765  


Q ss_pred             -------CcEEEEe
Q 005235          700 -------SVIRLYC  706 (707)
Q Consensus       700 -------g~IrlWd  706 (707)
                             |+|++|-
T Consensus       296 ~d~~reag~vKiFG  309 (313)
T KOG1407|consen  296 GDSNREAGTVKIFG  309 (313)
T ss_pred             CccccccceeEEec
Confidence                   5777763

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=2.3e-25  Score=242.09  Aligned_cols=299  Identities=15%  Similarity=0.169  Sum_probs=213.2

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc------------
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE------------  452 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~------------  452 (707)
                      ....++++.|.|+.|++||+.+..|..+.-. .+.|+++++.++   .+++++.++.+.+|++.....            
T Consensus       159 ~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~---~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~  235 (888)
T KOG0306|consen  159 NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK---LLVTAGTDSELKVWELAFEDDEKETNRYISTKL  235 (888)
T ss_pred             CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecc---eEEEEecCCceEEEEeecccccccccccceeec
Confidence            3456999999999999999999999987766 899999999994   599999999999999822100            


Q ss_pred             --------------hhcccccceeeec--------c----------------------------------c---------
Q 005235          453 --------------EEQRRVKDLLHVE--------T----------------------------------P---------  467 (707)
Q Consensus       453 --------------~~~~~~~~v~~~~--------~----------------------------------~---------  467 (707)
                                    .....++.++.+.        |                                  +         
T Consensus       236 ~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~  315 (888)
T KOG0306|consen  236 RGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLE  315 (888)
T ss_pred             cceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHH
Confidence                          0000111111000        0                                  0         


Q ss_pred             ------------cccc---------CCCCcEEEEecCC-ccc---------eEEeccCCCeEEEEEcCCCCEEEEEe---
Q 005235          468 ------------TAPD---------DNMASIVSWLQHD-KLD---------GIRLRHFKMVSSVEWHRRGDYLSTVM---  513 (707)
Q Consensus       468 ------------~~~~---------~~d~~i~iW~~~~-~~~---------~~~~~h~~~V~~v~~sp~g~~lat~s---  513 (707)
                                  +..+         -.+.++..+.++. ...         ....+|...|.++++|.+...+++++   
T Consensus       316 ~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~S  395 (888)
T KOG0306|consen  316 TIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGES  395 (888)
T ss_pred             heechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCc
Confidence                        0000         0112222222221 000         11345555555555555555555444   


Q ss_pred             ------------------------------------CCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEE
Q 005235          514 ------------------------------------PAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFV  556 (707)
Q Consensus       514 ------------------------------------~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v  556 (707)
                                                          ..|   .+.++|+...... ... .|.+.+.+++.+|++..+++
T Consensus       396 ikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~G---el~vfdlaS~~l~-Eti~AHdgaIWsi~~~pD~~g~vT  471 (888)
T KOG0306|consen  396 IKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNG---ELQVFDLASASLV-ETIRAHDGAIWSISLSPDNKGFVT  471 (888)
T ss_pred             EEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCC---ceEEEEeehhhhh-hhhhccccceeeeeecCCCCceEE
Confidence                                                333   4444444444333 333 67889999999999999999


Q ss_pred             Ee-CCeEEEEECCC-----CeEE--------EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235          557 ST-KKNIRVYDLLK-----QRLI--------KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       557 ~s-dg~I~iwDl~~-----~~~~--------~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                      |+ |.+|++||..-     +...        +++. -...|.|+.+||||.+|++|--|.+|.||-+++- +.+-.|-||
T Consensus       472 ~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGH  549 (888)
T KOG0306|consen  472 GSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGH  549 (888)
T ss_pred             ecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeeccc
Confidence            98 99999999641     1111        2222 2356999999999999999999999999999987 788889999


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235          623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI  702 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I  702 (707)
                      .-+|.|+..|||+.+++|||.|.+|+||=+      .=+   .|-+.+.+|...    |.++.|.|....++|+|.|+.|
T Consensus       550 kLPV~smDIS~DSklivTgSADKnVKiWGL------dFG---DCHKS~fAHdDS----vm~V~F~P~~~~FFt~gKD~kv  616 (888)
T KOG0306|consen  550 KLPVLSMDISPDSKLIVTGSADKNVKIWGL------DFG---DCHKSFFAHDDS----VMSVQFLPKTHLFFTCGKDGKV  616 (888)
T ss_pred             ccceeEEeccCCcCeEEeccCCCceEEecc------ccc---hhhhhhhcccCc----eeEEEEcccceeEEEecCcceE
Confidence            999999999999999999999999999933      222   247889999998    9999999999999999999999


Q ss_pred             EEEe
Q 005235          703 RLYC  706 (707)
Q Consensus       703 rlWd  706 (707)
                      +-||
T Consensus       617 KqWD  620 (888)
T KOG0306|consen  617 KQWD  620 (888)
T ss_pred             Eeec
Confidence            9996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.2e-26  Score=251.76  Aligned_cols=265  Identities=15%  Similarity=0.230  Sum_probs=222.3

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      -.++++-..|+|++||..-|.++..|.. .++|..|+|+|++. .+++++.|-.|++|+..+...               
T Consensus        22 PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrc---------------   85 (1202)
T KOG0292|consen   22 PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRC---------------   85 (1202)
T ss_pred             CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEeccccee---------------
Confidence            3788888999999999999999988876 99999999999994 677777778899998765422               


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                         ...+.+|-..|..+.||+.-.+++++|.|.   +|+||++.++.+. ..+ +|..-|+|..
T Consensus        86 -------------------lftL~GHlDYVRt~~FHheyPWIlSASDDQ---TIrIWNwqsr~~i-avltGHnHYVMcAq  142 (1202)
T KOG0292|consen   86 -------------------LFTLLGHLDYVRTVFFHHEYPWILSASDDQ---TIRIWNWQSRKCI-AVLTGHNHYVMCAQ  142 (1202)
T ss_pred             -------------------hhhhccccceeEEeeccCCCceEEEccCCC---eEEEEeccCCceE-EEEecCceEEEeec
Confidence                               124679999999999999999999999988   9999999999998 888 9999999999


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCC--------C--------------------e-EEEEEeCCCCCeEEEEEcCCCCEEE
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLK--------Q--------------------R-LIKKLETGLKEVSSIAIHPAGDNLI  596 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~--------~--------------------~-~~~~l~~~~~~I~sl~~spdg~~L~  596 (707)
                      |||...++++|+ |.+|||||+..        +                    . ....+.+|...|+-++|||.-.+|+
T Consensus       143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliV  222 (1202)
T KOG0292|consen  143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIV  222 (1202)
T ss_pred             cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEE
Confidence            999999999999 99999999842        1                    0 1235678999999999999999999


Q ss_pred             EEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235          597 VGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS  675 (707)
Q Consensus       597 sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~  675 (707)
                      +|+.|+.|++|.+.... =.+.++++|...|.++-|||...+++|.|.|++|+|||+      ....   ++++++-...
T Consensus       223 SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm------~kRt---~v~tfrrend  293 (1202)
T KOG0292|consen  223 SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM------TKRT---SVQTFRREND  293 (1202)
T ss_pred             ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec------cccc---ceeeeeccCC
Confidence            99999999999997541 134578899999999999999999999999999999954      3333   3777876555


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       676 ~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .    .+.++-||....++.|- |+-+.+|.
T Consensus       294 R----FW~laahP~lNLfAAgH-DsGm~VFk  319 (1202)
T KOG0292|consen  294 R----FWILAAHPELNLFAAGH-DSGMIVFK  319 (1202)
T ss_pred             e----EEEEEecCCcceeeeec-CCceEEEE
Confidence            5    89999999988665554 55555553

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=9.8e-26  Score=220.00  Aligned_cols=205  Identities=21%  Similarity=0.267  Sum_probs=181.6

Q ss_pred             EEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCcee-e-eee--ccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235          489 IRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSH-R-IPF--KLHGLPVSSVFHPTRSIFFVST-KKNI  562 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~-~-~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I  562 (707)
                      .+.+|.+.+..++|||. |..||+++.|.   .|+||+...+... . ..+  .|+..|.+++|+|.|++|++|+ |.++
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk---~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDK---AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCc---eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            46689999999999998 99999999987   9999999853221 1 334  7899999999999999999999 9999


Q ss_pred             EEEECCCC--eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC--cceEEeecCCCCEEEEEEcCCCCEE
Q 005235          563 RVYDLLKQ--RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS--KPYRVLKCHPKDITNVAFHRSYPLF  638 (707)
Q Consensus       563 ~iwDl~~~--~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~--~~~~~l~~h~~~I~~vafspdg~ll  638 (707)
                      .||.-..+  +++.+|.+|.+.|.|++|+++|.+||++|.|+.|-||.++...  .+...|+.|+..|..|.|||...+|
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence            99986543  7899999999999999999999999999999999999998442  5678899999999999999999999


Q ss_pred             EEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          639 ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       639 aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      +|+|.|.+|++|.-.      ......++.+|.+|...    |.+++|+|.|..|++++.|++|+||-
T Consensus       166 ~S~SYDnTIk~~~~~------~dddW~c~~tl~g~~~T----VW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDE------DDDDWECVQTLDGHENT----VWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             EEeccCCeEEEEeec------CCCCeeEEEEecCccce----EEEEEecCCCceEEEecCCcceEeee
Confidence            999999999999532      24445679999999987    99999999999999999999999996

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-25  Score=219.14  Aligned_cols=284  Identities=18%  Similarity=0.217  Sum_probs=226.8

Q ss_pred             CCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCcccc
Q 005235          289 PKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK  361 (707)
Q Consensus       289 ~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k  361 (707)
                      +.|.||+.     .||-+|.+|++.+.          |...  |...+++.|.+..+|...|     .|+|+-+.     
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaK----------D~~~~vw~s~nGerlGty~GHtGav-----W~~Did~~-----   63 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAK----------DSTPTVWYSLNGERLGTYDGHTGAV-----WCCDIDWD-----   63 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecC----------CCCceEEEecCCceeeeecCCCceE-----EEEEecCC-----
Confidence            46788987     49999999999776          5444  6666788899998888886     56554433     


Q ss_pred             ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC--
Q 005235          362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG--  439 (707)
Q Consensus       362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d--  439 (707)
                                                ...+++||.|.+++|||+.+|+++.+++...+|..+.|+++|  .++.++.|  
T Consensus        64 --------------------------s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~g--n~~l~~tD~~  115 (327)
T KOG0643|consen   64 --------------------------SKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGG--NLILASTDKQ  115 (327)
T ss_pred             --------------------------cceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCC--cEEEEEehhh
Confidence                                      248999999999999999999999999999999999999999  45555544  


Q ss_pred             ----CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc-ceEEeccCCCeEEEEEcCCCCEEEEEeC
Q 005235          440 ----QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL-DGIRLRHFKMVSSVEWHRRGDYLSTVMP  514 (707)
Q Consensus       440 ----~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~-~~~~~~h~~~V~~v~~sp~g~~lat~s~  514 (707)
                          +.|.++++........                            ... ...+..+.+.++.+.|.|.+.+|++|..
T Consensus       116 mg~~~~v~~fdi~~~~~~~~----------------------------s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe  167 (327)
T KOG0643|consen  116 MGYTCFVSVFDIRDDSSDID----------------------------SEEPYLKIPTPDSKITSALWGPLGETIIAGHE  167 (327)
T ss_pred             cCcceEEEEEEccCChhhhc----------------------------ccCceEEecCCccceeeeeecccCCEEEEecC
Confidence                4577777654322110                            111 1234567789999999999999999999


Q ss_pred             CCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 005235          515 AGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG  592 (707)
Q Consensus       515 dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg  592 (707)
                      +|   .|.+||+.++......- .|...|+.++|+++..+|++++ |.+-++||..+-.+++++... .+|++.+++|-.
T Consensus       168 ~G---~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aaisP~~  243 (327)
T KOG0643|consen  168 DG---SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAAISPLL  243 (327)
T ss_pred             CC---cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-ccccceeccccc
Confidence            99   99999999987663444 7888999999999999999999 999999999999999999865 789999999999


Q ss_pred             CEEEEEECCCcE--------------EEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          593 DNLIVGSREGKL--------------CWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       593 ~~L~sGs~Dg~I--------------~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      ++++.|+.-...              ++|++-.. ..+..+++|-++|++|+|||+|+..+||+.||.|+|.++.
T Consensus       244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e-EEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE-EEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ceEEecCCceeeeeeeecccccchhhhHHHHHHH-HHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            888887542211              22222211 3456788999999999999999999999999999998653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=2.9e-27  Score=236.62  Aligned_cols=250  Identities=18%  Similarity=0.240  Sum_probs=210.8

Q ss_pred             CCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCC
Q 005235          321 DRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDG  398 (707)
Q Consensus       321 dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~Dg  398 (707)
                      |+.+  |.-+...+++.+-++...+       |.|.++-|                               ++++||.|.
T Consensus       216 DnTikiWD~n~~~c~~~L~GHtGSV-------LCLqyd~r-------------------------------viisGSSDs  257 (499)
T KOG0281|consen  216 DNTIKIWDKNSLECLKILTGHTGSV-------LCLQYDER-------------------------------VIVSGSSDS  257 (499)
T ss_pred             cCceEEeccccHHHHHhhhcCCCcE-------Eeeeccce-------------------------------EEEecCCCc
Confidence            5555  5566777888887777765       65666633                               799999999


Q ss_pred             cEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcE
Q 005235          399 TVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASI  477 (707)
Q Consensus       399 tVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i  477 (707)
                      ||+|||++||+++.++-+ .+.|..+.|+..   .+++++.|.++.+|++.......                       
T Consensus       258 TvrvWDv~tge~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it-----------------------  311 (499)
T KOG0281|consen  258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDIT-----------------------  311 (499)
T ss_pred             eEEEEeccCCchhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHH-----------------------
Confidence            999999999999998877 899999999865   59999999999999987653210                       


Q ss_pred             EEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEE
Q 005235          478 VSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFV  556 (707)
Q Consensus       478 ~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v  556 (707)
                              ...++.+|...|+.|.|+  .+|+++++.|.   +|++|++.+.... +++ +|+..|.|+.+.  ++++++
T Consensus       312 --------~rrVLvGHrAaVNvVdfd--~kyIVsASgDR---TikvW~~st~efv-Rtl~gHkRGIAClQYr--~rlvVS  375 (499)
T KOG0281|consen  312 --------LRRVLVGHRAAVNVVDFD--DKYIVSASGDR---TIKVWSTSTCEFV-RTLNGHKRGIACLQYR--DRLVVS  375 (499)
T ss_pred             --------HHHHHhhhhhheeeeccc--cceEEEecCCc---eEEEEeccceeee-hhhhcccccceehhcc--CeEEEe
Confidence                    112367999999999996  45999999877   9999999999998 888 999999988875  778888


Q ss_pred             Ee-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--------ceEEeecCCCCEE
Q 005235          557 ST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK--------PYRVLKCHPKDIT  627 (707)
Q Consensus       557 ~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~--------~~~~l~~h~~~I~  627 (707)
                      |+ |.+||+||+..|.+++.+++|..-|.|+.|.  ...+++|.+||+|+|||+..+..        ++.++..|++.|.
T Consensus       376 GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF  453 (499)
T KOG0281|consen  376 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF  453 (499)
T ss_pred             cCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence            87 9999999999999999999999999999995  67999999999999999987543        3556778999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235          628 NVAFHRSYPLFASCSDDCTAYVFHGMV  654 (707)
Q Consensus       628 ~vafspdg~llaSgs~Dg~I~Vwd~~~  654 (707)
                      .+.|  |...+++++.|.+|.|||+..
T Consensus       454 rLQF--D~fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  454 RLQF--DEFQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             EEee--cceEEEeccCCCeEEEEEcCC
Confidence            9999  567899999999999997653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=2.4e-26  Score=221.56  Aligned_cols=265  Identities=17%  Similarity=0.241  Sum_probs=225.1

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      ..+.+|++++.||.-.+-+-.||.-+.+|.+ .+.|++.+++.+. ..-++++.|-+-++||.-++...           
T Consensus        27 p~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~tgdel-----------   94 (334)
T KOG0278|consen   27 PDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVTGDEL-----------   94 (334)
T ss_pred             CCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhhhhhh-----------
Confidence            4567899999999999999999999999998 8999999999887 35566677888889987776442           


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV  543 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~  543 (707)
                                              ....|...|.+++|+.+.++|++|+.+.   .++|+|++........+ +|.+.|.
T Consensus        95 ------------------------hsf~hkhivk~~af~~ds~~lltgg~ek---llrvfdln~p~App~E~~ghtg~Ir  147 (334)
T KOG0278|consen   95 ------------------------HSFEHKHIVKAVAFSQDSNYLLTGGQEK---LLRVFDLNRPKAPPKEISGHTGGIR  147 (334)
T ss_pred             ------------------------hhhhhhheeeeEEecccchhhhccchHH---HhhhhhccCCCCCchhhcCCCCcce
Confidence                                    1347888999999999999999999877   99999999887765667 9999999


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235          544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                      .+.|....+.|++++ |++||+||.+++..+++|... ..|+++.++++|++|.++ +.+.|.+||..+- .+++.+. -
T Consensus       148 ~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf-~~lKs~k-~  223 (334)
T KOG0278|consen  148 TVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF-GLLKSYK-M  223 (334)
T ss_pred             eEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEe-cCceeEEeccccc-cceeecc-C
Confidence            999988878888766 899999999999999999865 689999999999877665 5578999999866 5566554 3


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE-eeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235          623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI-LRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV  701 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~-l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~  701 (707)
                      ...|.+..++|+...|++|+.|+.++.||..      ++..   +.. .+||-++    |.++.|+|+|...++||.||+
T Consensus       224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~------TgeE---i~~~nkgh~gp----VhcVrFSPdGE~yAsGSEDGT  290 (334)
T KOG0278|consen  224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYN------TGEE---IGSYNKGHFGP----VHCVRFSPDGELYASGSEDGT  290 (334)
T ss_pred             ccccccccccCCCceEEecCcceEEEEEecc------CCce---eeecccCCCCc----eEEEEECCCCceeeccCCCce
Confidence            4669999999999999999999999999554      4433   233 4789888    999999999999999999999


Q ss_pred             EEEEe
Q 005235          702 IRLYC  706 (707)
Q Consensus       702 IrlWd  706 (707)
                      ||||.
T Consensus       291 irlWQ  295 (334)
T KOG0278|consen  291 IRLWQ  295 (334)
T ss_pred             EEEEE
Confidence            99996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=7.8e-27  Score=231.55  Aligned_cols=277  Identities=16%  Similarity=0.229  Sum_probs=235.0

Q ss_pred             CCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec---------CCcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235          377 SRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI---------GEAIQYVAWNPLPELPVLAVSVGQDVLILNT  447 (707)
Q Consensus       377 ~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~  447 (707)
                      +..++.-|+++++++++||.||.|.||+..+|+..+.++.         ..+|.|+.|+.|.+ .+++++.||.|++|.+
T Consensus       214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRI  292 (508)
T ss_pred             cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEEEE
Confidence            3445567899999999999999999999999987665543         78999999999985 6888889999999998


Q ss_pred             CCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC
Q 005235          448 GLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS  527 (707)
Q Consensus       448 ~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~  527 (707)
                      .+|.+.-                                 ..-..|+..|+|+.|+.++..+++++.|.   +++|+-+.
T Consensus       293 ~tG~ClR---------------------------------rFdrAHtkGvt~l~FSrD~SqiLS~sfD~---tvRiHGlK  336 (508)
T KOG0275|consen  293 ETGQCLR---------------------------------RFDRAHTKGVTCLSFSRDNSQILSASFDQ---TVRIHGLK  336 (508)
T ss_pred             ecchHHH---------------------------------HhhhhhccCeeEEEEccCcchhhcccccc---eEEEeccc
Confidence            8874421                                 01237999999999999999999999988   99999999


Q ss_pred             CCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC--CCeEEEEEcCCC-CEEEEEECCC
Q 005235          528 KKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL--KEVSSIAIHPAG-DNLIVGSREG  602 (707)
Q Consensus       528 ~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~--~~I~sl~~spdg-~~L~sGs~Dg  602 (707)
                      .+++. ..| +|.+.|+.+.|.++|..+++++ ||+|++|+..+.+++.++....  -+|+++-.-|.+ .+++++...+
T Consensus       337 SGK~L-KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn  415 (508)
T KOG0275|consen  337 SGKCL-KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN  415 (508)
T ss_pred             cchhH-HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence            99998 899 9999999999999999999988 9999999999999999887543  457888777755 6889999999


Q ss_pred             cEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235          603 KLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR  679 (707)
Q Consensus       603 ~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~  679 (707)
                      +|+|.++. + +.++.+...   .+...+++.||.|.++.+.+.|+.++.|.+      .++.+   -.++.-|...   
T Consensus       416 tv~imn~q-G-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~------~sG~L---E~tl~VhEkd---  481 (508)
T KOG0275|consen  416 TVYIMNMQ-G-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV------LSGKL---ERTLPVHEKD---  481 (508)
T ss_pred             eEEEEecc-c-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe------ecCce---eeeeeccccc---
Confidence            99999986 3 667777543   345677889999999999999999999943      34443   5677788877   


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          680 GVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       680 gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                       |..++-||.+..|++-+.||.+++|.
T Consensus       482 -vIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  482 -VIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             -ccccccCcccchhhhhcccchhhhcC
Confidence             99999999999999999999999995

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.2e-25  Score=212.25  Aligned_cols=241  Identities=17%  Similarity=0.210  Sum_probs=206.8

Q ss_pred             EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE
Q 005235          412 RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR  490 (707)
Q Consensus       412 ~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~  490 (707)
                      +.+.. .++|.++.|+-+|+ +.++++.|.+|++|++..+..                                  ....
T Consensus        11 ~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~l----------------------------------iktY   55 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGAL----------------------------------IKTY   55 (307)
T ss_pred             eeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccce----------------------------------eeee
Confidence            34444 78999999999995 899999999999999866522                                  1235


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235          491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL  568 (707)
Q Consensus       491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~  568 (707)
                      .+|...|..++.+.+...|++++.|.   .|.+||+++++.. +.| +|.+.|+.+.|+.+...+++|+ |.+|++||.+
T Consensus        56 sghG~EVlD~~~s~Dnskf~s~GgDk---~v~vwDV~TGkv~-Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR  131 (307)
T KOG0316|consen   56 SGHGHEVLDAALSSDNSKFASCGGDK---AVQVWDVNTGKVD-RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR  131 (307)
T ss_pred             cCCCceeeeccccccccccccCCCCc---eEEEEEcccCeee-eecccccceeeEEEecCcceEEEeccccceeEEEEcc
Confidence            68999999999999999999999877   9999999999998 999 9999999999999999999999 9999999998


Q ss_pred             CC--eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235          569 KQ--RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT  646 (707)
Q Consensus       569 ~~--~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~  646 (707)
                      +.  ++++.+......|.++.++  +..|++||.||+++.||++.+ +..  -.....+|+++.|+++++....++.|++
T Consensus       132 S~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G-~l~--sDy~g~pit~vs~s~d~nc~La~~l~st  206 (307)
T KOG0316|consen  132 SRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG-TLS--SDYFGHPITSVSFSKDGNCSLASSLDST  206 (307)
T ss_pred             cCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecc-eee--hhhcCCcceeEEecCCCCEEEEeeccce
Confidence            64  7888888888889999986  678999999999999999987 333  2344678999999999999999999999


Q ss_pred             EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +++.      |-.++.+   ++..+||...  .--.++++......+++|+.||.|.+|||
T Consensus       207 lrLl------Dk~tGkl---L~sYkGhkn~--eykldc~l~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  207 LRLL------DKETGKL---LKSYKGHKNM--EYKLDCCLNQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             eeec------ccchhHH---HHHhcccccc--eeeeeeeecccceeEEeccCCceEEEEEe
Confidence            9999      5555655   7888899764  12456778888889999999999999996

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.1e-24  Score=236.05  Aligned_cols=263  Identities=16%  Similarity=0.204  Sum_probs=219.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      +.++.| ....|.+|+..+|........ .+.|++|.|+++| ..|+++..+|.|.|||.......              
T Consensus       189 n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~--------------  252 (484)
T KOG0305|consen  189 NVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKT--------------  252 (484)
T ss_pred             CeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhcccc--------------
Confidence            355554 445799999999997766666 8999999999999 47888889999999997654221              


Q ss_pred             ccccCCCCcEEEEecCCccceEEec-cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLR-HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS  545 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~-h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v  545 (707)
                                          ..+.. |...|.+++|.  +..+.+|+.++   .|.++|++........+ .|...|..+
T Consensus       253 --------------------~~~~~~h~~rvg~laW~--~~~lssGsr~~---~I~~~dvR~~~~~~~~~~~H~qeVCgL  307 (484)
T KOG0305|consen  253 --------------------RTLRGSHASRVGSLAWN--SSVLSSGSRDG---KILNHDVRISQHVVSTLQGHRQEVCGL  307 (484)
T ss_pred             --------------------ccccCCcCceeEEEecc--CceEEEecCCC---cEEEEEEecchhhhhhhhcccceeeee
Confidence                                12234 89999999998  77899999988   99999999887773335 899999999


Q ss_pred             EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC-CCEEEEE--ECCCcEEEEECCCCCcceEEeec
Q 005235          546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA-GDNLIVG--SREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd-g~~L~sG--s~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                      .|++++.+|++|+ |+.+.|||.....+..++..|...|.+++|+|- ...||+|  +.|+.|++||..++ ..+..+..
T Consensus       308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdt  386 (484)
T KOG0305|consen  308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVDT  386 (484)
T ss_pred             EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEeccccc
Confidence            9999999999998 999999999888899999999999999999995 4677875  57999999999977 55665543


Q ss_pred             CCCCEEEEEEcCCCCEEEEE--eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235          622 HPKDITNVAFHRSYPLFASC--SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD  699 (707)
Q Consensus       622 h~~~I~~vafspdg~llaSg--s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D  699 (707)
                       ...|.+|.|++.++-|+++  ..++.|.||..      .+   ..++..+.||...    |..++++|||..|++|++|
T Consensus       387 -gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~------ps---~~~~~~l~gH~~R----Vl~la~SPdg~~i~t~a~D  452 (484)
T KOG0305|consen  387 -GSQVCSLIWSKKYKELLSTHGYSENQITLWKY------PS---MKLVAELLGHTSR----VLYLALSPDGETIVTGAAD  452 (484)
T ss_pred             -CCceeeEEEcCCCCEEEEecCCCCCcEEEEec------cc---cceeeeecCCcce----eEEEEECCCCCEEEEeccc
Confidence             5679999999999755553  35678999944      23   3458899999998    9999999999999999999


Q ss_pred             CcEEEEeC
Q 005235          700 SVIRLYCH  707 (707)
Q Consensus       700 g~IrlWdl  707 (707)
                      .++++|++
T Consensus       453 ETlrfw~~  460 (484)
T KOG0305|consen  453 ETLRFWNL  460 (484)
T ss_pred             CcEEeccc
Confidence            99999985

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=7.7e-26  Score=240.29  Aligned_cols=379  Identities=21%  Similarity=0.276  Sum_probs=272.2

Q ss_pred             CCCCCCCccccccccCCcccccCCCCC-CCCCCCCCChH-HHHHHHHHHHHHHcCccccCCCCCccccccccccCCCchH
Q 005235          198 HTDFDQYADYVDWFKYDDALHPLSNAP-EPKRRFIPSKW-ESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSSAA  275 (707)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~k~~f~psk~-e~~~v~klv~~ir~g~~~~~~~~~~~~~~~~lW~~~~~~~  275 (707)
                      .++|||.++|+  |+.++...+...-| +.|..|+|+|. ..++|..+-++||+.+          ++++||+-+.....
T Consensus       298 eESYNPP~EYL--~~~eE~~~we~~E~~~R~l~F~P~ky~sLR~VPaY~r~irErF----------eRcLDLYL~PR~rK  365 (733)
T KOG0650|consen  298 EESYNPPEEYL--FDEEEKKAWEEAEPEDRKLNFIPQKYKSLRKVPAYERSIRERF----------ERCLDLYLAPRVRK  365 (733)
T ss_pred             ccccCCchhhc--cCHHHhhhhhhccccccccccccccchhhhcchhHHHHHHHHH----------HHhHHhhhCccccc
Confidence            46899999999  77677666665555 44667999998 8899999999999988          56888887765433


Q ss_pred             Hhhcc-----ccCCCCCC----------CCCCCCcc-----ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccce
Q 005235          276 EKAKH-----LAYIPAPK----------PKLPGHEE-----SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTS  332 (707)
Q Consensus       276 ~~~~~-----~~~~papk----------~~lpgh~~-----synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~  332 (707)
                      .+...     ...||.|+          +-..||..     |-.|.|++|++++.   ++.|+.           ..+.|
T Consensus       366 ~rlniDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi-----------~TgRc  434 (733)
T KOG0650|consen  366 MRLNIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEI-----------ATGRC  434 (733)
T ss_pred             ceecCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEe-----------ecceE
Confidence            22221     34566554          44668876     78899999999655   456654           45667


Q ss_pred             ecccccccccccccceeeeeEEEcCccccceeecCCC-C--CCC-CCCCCCCCcccCCCCcEEEEE----eCCCcEEEEe
Q 005235          333 LRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPE-T--LKP-KLPSRKDLKPYPVACYLEYKG----STDGTVRIWE  404 (707)
Q Consensus       333 lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~-~--llp-~lp~~~~l~pfp~~~~~l~sg----s~DgtVrIWd  404 (707)
                      +++++.-. .|       ..+.|+|.....-|.+..+ .  +++ .+-  ..+...++. .+++++    ..++.|..|.
T Consensus       435 vr~~~~d~-~I-------~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G--~~~e~~~t~-ell~~~~~~~~p~~~~~~W~  503 (733)
T KOG0650|consen  435 VRTVQFDS-EI-------RSVAWNPLSDLCVLAVAVGECVLIVNPIFG--DRLEVGPTK-ELLASAPNESEPDAAVVTWS  503 (733)
T ss_pred             EEEEeecc-ee-------EEEEecCCCCceeEEEEecCceEEeCcccc--chhhhcchh-hhhhcCCCccCCcccceeec
Confidence            77774322 22       4567888776655544221 2  111 111  011111111 122222    4567888897


Q ss_pred             CCC---Ce--EEEEEecCCcEEEEEEccCCCccEEEEEeCC---eEEEEECCCCCchhcccccceeeecccccccCCCCc
Q 005235          405 VES---GR--CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ---DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMAS  476 (707)
Q Consensus       405 ~~t---g~--~l~~l~~~~~V~~v~~spdg~~~lla~s~d~---~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~  476 (707)
                      -..   ++  ...++.+...|..|.|+..|+ +|++++.++   .|.|.++.....                        
T Consensus       504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~s------------------------  558 (733)
T KOG0650|consen  504 RASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRKS------------------------  558 (733)
T ss_pred             hhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEecccccc------------------------
Confidence            542   11  223667789999999999995 666666543   455555433211                        


Q ss_pred             EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEE
Q 005235          477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFF  555 (707)
Q Consensus       477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~  555 (707)
                                +..+..-.+.|.++.|||...+|++++.    +.|+|||+.++... ..+ .....|..++.||.|..|+
T Consensus       559 ----------Q~PF~kskG~vq~v~FHPs~p~lfVaTq----~~vRiYdL~kqelv-KkL~tg~kwiS~msihp~GDnli  623 (733)
T KOG0650|consen  559 ----------QSPFRKSKGLVQRVKFHPSKPYLFVATQ----RSVRIYDLSKQELV-KKLLTGSKWISSMSIHPNGDNLI  623 (733)
T ss_pred             ----------cCchhhcCCceeEEEecCCCceEEEEec----cceEEEehhHHHHH-HHHhcCCeeeeeeeecCCCCeEE
Confidence                      1123345678999999999999988885    38999999997766 555 6677899999999999999


Q ss_pred             EEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--------CcceEEeecCCCC
Q 005235          556 VST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS--------SKPYRVLKCHPKD  625 (707)
Q Consensus       556 v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~--------~~~~~~l~~h~~~  625 (707)
                      +++ |+.++.||+.-. ++.+++..|...+++++||+.-.++++|+.||.+.||.-.-.        -.|++.|++|...
T Consensus       624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~  703 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT  703 (733)
T ss_pred             EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence            998 999999999854 788899999999999999999999999999999999853211        1578899999765


Q ss_pred             ----EEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          626 ----ITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       626 ----I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                          |..+.|||..++|+|++.||+|++|
T Consensus       704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cccceEeecccCCCceEEecCCCceEEee
Confidence                9999999999999999999999999

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1e-24  Score=224.38  Aligned_cols=276  Identities=19%  Similarity=0.291  Sum_probs=232.5

Q ss_pred             CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc
Q 005235          380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV  458 (707)
Q Consensus       380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~  458 (707)
                      .+.+.|. ...+.+|+.|.++.++|..+++.+.++++ .-.|+.+.|+|+.. .+++++.|..|+||.......      
T Consensus       224 ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~------  295 (506)
T KOG0289|consen  224 ALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSE------  295 (506)
T ss_pred             EEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchh-heeecCCcceEEeeccccccC------
Confidence            3333444 46899999999999999999999999998 78899999999984 788888999999998765421      


Q ss_pred             cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec-
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK-  537 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~-  537 (707)
                                                  ......|..+|+.+..||.|.||++++.|+   ++.+.|++.+... .... 
T Consensus       296 ----------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~---~w~Fsd~~~g~~l-t~vs~  343 (506)
T KOG0289|consen  296 ----------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDG---TWAFSDISSGSQL-TVVSD  343 (506)
T ss_pred             ----------------------------ccccccccccceeeeeccCCcEEEEecCCc---eEEEEEccCCcEE-EEEee
Confidence                                        123568999999999999999999999998   9999999999876 4442 


Q ss_pred             --cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235          538 --LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK  614 (707)
Q Consensus       538 --~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~  614 (707)
                        ..-.+++.+|||||.+|.+|+ |+.|+|||+..+..+..|.+|.++|.+++|+-+|-+|++++.|+.|++||++.. +
T Consensus       344 ~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~  422 (506)
T KOG0289|consen  344 ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-K  422 (506)
T ss_pred             ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-c
Confidence              234589999999999999998 999999999999999999999999999999999999999999999999999976 5


Q ss_pred             ceEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE
Q 005235          615 PYRVLKCHP-KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL  693 (707)
Q Consensus       615 ~~~~l~~h~-~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L  693 (707)
                      .++++.-.. ..|.++.|.+.|.+|+.++.|=.|+++.-       .......+..+..|.+.    .+.+.|....++|
T Consensus       423 n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k-------~~k~W~~~~~~~~~sg~----st~v~Fg~~aq~l  491 (506)
T KOG0289|consen  423 NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKK-------KTKSWTEIKELADHSGL----STGVRFGEHAQYL  491 (506)
T ss_pred             ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEec-------ccccceeeehhhhcccc----cceeeecccceEE
Confidence            677665432 46999999999999999987766666631       12223357778888866    8999999999999


Q ss_pred             EEEeCCCcEEEEeC
Q 005235          694 FTAGADSVIRLYCH  707 (707)
Q Consensus       694 ~s~g~Dg~IrlWdl  707 (707)
                      +++|.|..++++.+
T Consensus       492 ~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  492 ASTSMDAILRLYAL  505 (506)
T ss_pred             eeccchhheEEeec
Confidence            99999999999864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=2.3e-24  Score=244.22  Aligned_cols=285  Identities=16%  Similarity=0.198  Sum_probs=218.7

Q ss_pred             CcEEEEEe--CCCcEEEEeCCCC------------eEEEEE-ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC-C
Q 005235          388 CYLEYKGS--TDGTVRIWEVESG------------RCLRVL-EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG-N  451 (707)
Q Consensus       388 ~~~l~sgs--~DgtVrIWd~~tg------------~~l~~l-~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~-~  451 (707)
                      +..++||+  .||.++||+...-            +.+.+. .+.+.|+|+.|+||| .+|++|+.|..|.||.-... .
T Consensus        25 g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~  103 (942)
T KOG0973|consen   25 GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGS  103 (942)
T ss_pred             ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCC
Confidence            35899999  9999999997531            112222 238999999999999 47888888889999996531 0


Q ss_pred             chhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce
Q 005235          452 EEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS  531 (707)
Q Consensus       452 ~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~  531 (707)
                      ...             +-+.+....+.-|.    ....+.+|.+.|..++|+|++.+||+++.|+   +|.||+..+...
T Consensus       104 ~~~-------------fgs~g~~~~vE~wk----~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn---sViiwn~~tF~~  163 (942)
T KOG0973|consen  104 GTV-------------FGSTGGAKNVESWK----VVSILRGHDSDVLDVNWSPDDSLLVSVSLDN---SVIIWNAKTFEL  163 (942)
T ss_pred             ccc-------------ccccccccccceee----EEEEEecCCCccceeccCCCccEEEEecccc---eEEEEcccccee
Confidence            000             01112233444552    2345779999999999999999999999998   999999999977


Q ss_pred             eeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC------CCeEEEEEcCCCCEEEEEEC---
Q 005235          532 HRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL------KEVSSIAIHPAGDNLIVGSR---  600 (707)
Q Consensus       532 ~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~------~~I~sl~~spdg~~L~sGs~---  600 (707)
                      . ..+ +|.+.|..+.|.|-|++|++-+ |++|+||.+.+-.+.+.+..+-      ..+..+.|||||.+|++...   
T Consensus       164 ~-~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~  242 (942)
T KOG0973|consen  164 L-KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG  242 (942)
T ss_pred             e-eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence            6 777 9999999999999999999988 8999999988777777765432      34788999999999998632   


Q ss_pred             -CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCC-------------C----CEEEEEeCCCcEEEEecccccCCCCCC
Q 005235          601 -EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-------------Y----PLFASCSDDCTAYVFHGMVYSDLNQNP  662 (707)
Q Consensus       601 -Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd-------------g----~llaSgs~Dg~I~Vwd~~~~~Dl~~~~  662 (707)
                       -..+.|.+-.+. +.-..|-+|.+++.+++|+|.             +    ..+|+||.|++|-||...     ...|
T Consensus       243 ~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~-----~~RP  316 (942)
T KOG0973|consen  243 GKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA-----LPRP  316 (942)
T ss_pred             CcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC-----CCCc
Confidence             235888888766 566788999999999999982             1    168899999999999532     2223


Q ss_pred             cccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          663 LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       663 ~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +. .+..+..+.      |.+++|+|||-.|+.+|.||+|.+..+
T Consensus       317 l~-vi~~lf~~S------I~DmsWspdG~~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  317 LF-VIHNLFNKS------IVDMSWSPDGFSLFACSLDGTVALIHF  354 (942)
T ss_pred             hh-hhhhhhcCc------eeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence            22 223333443      999999999999999999999998753

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=7.6e-24  Score=236.78  Aligned_cols=248  Identities=12%  Similarity=0.072  Sum_probs=190.6

Q ss_pred             CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc----ceEEecc
Q 005235          418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL----DGIRLRH  493 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~----~~~~~~h  493 (707)
                      ..|.....++++ ..+++++.+.....|+...+                         ...++....+.    ...+.+|
T Consensus        21 ~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg-------------------------~~v~~~~~~G~~~~~~~~l~GH   74 (493)
T PTZ00421         21 LNVTPSTALWDC-SNTIACNDRFIAVPWQQLGS-------------------------TAVLKHTDYGKLASNPPILLGQ   74 (493)
T ss_pred             eccccccccCCC-CCcEeECCceEEEEEecCCc-------------------------eEEeeccccccCCCCCceEeCC
Confidence            345555666675 25777777777778875332                         11222211111    1236799


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCc-------eeeeee-ccCCCeEEEEEeCCC-CEEEEEe-CCeE
Q 005235          494 FKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKL-------SHRIPF-KLHGLPVSSVFHPTR-SIFFVST-KKNI  562 (707)
Q Consensus       494 ~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~-------~~~~~~-~~~~~V~~v~fspd~-~~l~v~s-dg~I  562 (707)
                      .+.|.+++|+| ++++|++++.|+   +|+||++....       .. ..+ +|...|.+++|+|++ .+|++++ |++|
T Consensus        75 ~~~V~~v~fsP~d~~~LaSgS~Dg---tIkIWdi~~~~~~~~~~~~l-~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         75 EGPIIDVAFNPFDPQKLFTASEDG---TIMGWGIPEEGLTQNISDPI-VHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeCCC---EEEEEecCCCccccccCcce-EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            99999999999 889999999998   99999997653       22 456 889999999999986 6788887 9999


Q ss_pred             EEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC-EEEEEEcCCCCEEEEE
Q 005235          563 RVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD-ITNVAFHRSYPLFASC  641 (707)
Q Consensus       563 ~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~-I~~vafspdg~llaSg  641 (707)
                      +|||+.+++.+..+.+|...|.+++|+|+|.+|++|+.|+.|++||++++ .++..+.+|.+. +..+.|++++..|+++
T Consensus       151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999987 677888889765 4567899988877765


Q ss_pred             e----CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235          642 S----DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       642 s----~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl  707 (707)
                      +    .|+.|+|||++..      .  .++.....+...   ++..+.|++++.+|+++| .||+|++|++
T Consensus       230 G~s~s~Dr~VklWDlr~~------~--~p~~~~~~d~~~---~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKM------A--SPYSTVDLDQSS---ALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             ecCCCCCCeEEEEeCCCC------C--CceeEeccCCCC---ceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            4    4799999965421      1  134444333322   377788999999999888 5999999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=1.5e-24  Score=211.24  Aligned_cols=275  Identities=15%  Similarity=0.217  Sum_probs=223.2

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      |..++.+|++++.|.++.||-..+|+.+.++.+ .+.|+|+...-+. ..+++++.|.+++|||+.+|..          
T Consensus        18 yN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~----------   86 (327)
T KOG0643|consen   18 YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQ----------   86 (327)
T ss_pred             ecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcE----------
Confidence            677889999999999999999999999999999 8999999999888 4899999999999999988733          


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC--CccEEEEEECCCCc-------eee
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG--ESRAIFMHQLSKKL-------SHR  533 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg--~~~~V~Iwdl~~~~-------~~~  533 (707)
                                    +..|           ....+|..+.|+++|++++.+..+.  ....|.+++++...       .. 
T Consensus        87 --------------la~~-----------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~-  140 (327)
T KOG0643|consen   87 --------------LATW-----------KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY-  140 (327)
T ss_pred             --------------EEEe-----------ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce-
Confidence                          2333           5678899999999999988876542  45689999998433       22 


Q ss_pred             eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235          534 IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD  610 (707)
Q Consensus       534 ~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~  610 (707)
                      ..+ .+...++.+.|.|-+.+|++|. +|.|.+||++++ +.+.....|...|+.|.++|+..++++||.|.+-++||+.
T Consensus       141 ~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  141 LKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR  220 (327)
T ss_pred             EEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence            333 6678999999999999999998 899999999997 5666667888999999999999999999999999999999


Q ss_pred             CCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE---------EecccccCCCCCCcccceEEeeCCCCCCCCCe
Q 005235          611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYV---------FHGMVYSDLNQNPLIVPLEILRGHTSSNGRGV  681 (707)
Q Consensus       611 ~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~V---------wd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV  681 (707)
                      +- ..++++.. ..+|++.+++|....++.|+.-...-|         |..+.| ++.   ....+..++||-++    |
T Consensus       221 tl-~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy-h~i---~eEEigrvkGHFGP----I  290 (327)
T KOG0643|consen  221 TL-EVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY-HLI---FEEEIGRVKGHFGP----I  290 (327)
T ss_pred             ce-eeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHH-HHH---HHHHhccccccccC----c
Confidence            77 67777764 578999999998776666543221111         111111 000   01135678999998    9


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          682 MDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       682 ~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      ++++|||+|+-.+|||.||.|||.
T Consensus       291 NsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  291 NSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             ceeEECCCCcccccCCCCceEEEE
Confidence            999999999999999999999985

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.93  E-value=8.3e-26  Score=231.40  Aligned_cols=264  Identities=17%  Similarity=0.212  Sum_probs=214.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          389 YLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      ..|++|+.|..|++|++..++  .+.++.+ .+.|+++.|.+++ .++++++.|+.+++|++.....             
T Consensus       188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~-------------  253 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRL-------------  253 (459)
T ss_pred             chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccchhh-------------
Confidence            589999999999999998776  4555655 7889999999999 5899999999999999766422             


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEE
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSS  545 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v  545 (707)
                                           ...+.+|.+.|+++.|......+++|+.|.   +|++||+.+..+. .++-....+..+
T Consensus       254 ---------------------~~TLsGHtdkVt~ak~~~~~~~vVsgs~DR---tiK~WDl~k~~C~-kt~l~~S~cnDI  308 (459)
T KOG0288|consen  254 ---------------------RHTLSGHTDKVTAAKFKLSHSRVVSGSADR---TIKLWDLQKAYCS-KTVLPGSQCNDI  308 (459)
T ss_pred             ---------------------hhhhcccccceeeehhhccccceeeccccc---hhhhhhhhhhhee-ccccccccccce
Confidence                                 123668999999999988777799999877   9999999998887 544344455566


Q ss_pred             EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--
Q 005235          546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--  622 (707)
Q Consensus       546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--  622 (707)
                      +.+  ...++++. |++||+||+++..++.....+ +.|+++..+++|..|.+.+.|.++.++|+++. ....++.+-  
T Consensus       309 ~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~  384 (459)
T KOG0288|consen  309 VCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGF  384 (459)
T ss_pred             Eec--ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeecccc
Confidence            655  44566666 999999999999999988877 58999999999999999999999999999976 445555432  


Q ss_pred             --CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          623 --PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       623 --~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                        ....+.+.|||++.|+|+||.||.|+||      ++.++.+   .+.+...+..  .+|++++|+|.|..|++++.++
T Consensus       385 k~asDwtrvvfSpd~~YvaAGS~dgsv~iW------~v~tgKl---E~~l~~s~s~--~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  385 KCASDWTRVVFSPDGSYVAAGSADGSVYIW------SVFTGKL---EKVLSLSTSN--AAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             ccccccceeEECCCCceeeeccCCCcEEEE------EccCceE---EEEeccCCCC--cceEEEEEcCCCchhhcccCCc
Confidence              2347899999999999999999999999      4555554   4444433221  2599999999999999999999


Q ss_pred             cEEEEe
Q 005235          701 VIRLYC  706 (707)
Q Consensus       701 ~IrlWd  706 (707)
                      .+.+|.
T Consensus       454 ~v~lW~  459 (459)
T KOG0288|consen  454 AVTLWT  459 (459)
T ss_pred             ceEecC
Confidence            999994

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=3.4e-24  Score=240.12  Aligned_cols=259  Identities=15%  Similarity=0.180  Sum_probs=223.1

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEE-Eec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRV-LEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~-l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      ...+++|+.|++|++|+..++..+.. +.+ .+.|.++++...+ ..+++++.|.++++||..++...            
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~------------  284 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECT------------  284 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEE------------
Confidence            45889999999999999999999888 777 8999999998733 47999999999999998776432            


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEE
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVS  544 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~  544 (707)
                                            ..+.+|.+.|.++...  +.++++|+.|.   +|++|++.++..+ ..+ +|.++|.+
T Consensus       285 ----------------------~~l~gh~stv~~~~~~--~~~~~sgs~D~---tVkVW~v~n~~~l-~l~~~h~~~V~~  336 (537)
T KOG0274|consen  285 ----------------------HSLQGHTSSVRCLTID--PFLLVSGSRDN---TVKVWDVTNGACL-NLLRGHTGPVNC  336 (537)
T ss_pred             ----------------------EEecCCCceEEEEEcc--CceEeeccCCc---eEEEEeccCcceE-EEeccccccEEE
Confidence                                  2466899999999864  55788889988   9999999999988 888 69999999


Q ss_pred             EEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235          545 SVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP  623 (707)
Q Consensus       545 v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~  623 (707)
                      +..+  +.++++|+ |++|++||+.++++++++.+|..+|.++.+.+. ..+++|+.|+.|++||+.+..+++.++.+|.
T Consensus       337 v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~  413 (537)
T KOG0274|consen  337 VQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT  413 (537)
T ss_pred             EEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCc
Confidence            9998  78888888 999999999999999999999999999988755 8999999999999999997657899999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC-CCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235          624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG-HTSSNGRGVMDCKFHPRQPWLFTAGADSVI  702 (707)
Q Consensus       624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~~~~~gV~~l~fspdg~~L~s~g~Dg~I  702 (707)
                      .-+..+.+  .+++|++++.|++|++||      ..++..   ++++.+ |...    |..+++.  ...+++++.||++
T Consensus       414 ~~v~~l~~--~~~~Lvs~~aD~~Ik~WD------~~~~~~---~~~~~~~~~~~----v~~l~~~--~~~il~s~~~~~~  476 (537)
T KOG0274|consen  414 SLVSSLLL--RDNFLVSSSADGTIKLWD------AEEGEC---LRTLEGRHVGG----VSALALG--KEEILCSSDDGSV  476 (537)
T ss_pred             cccccccc--ccceeEeccccccEEEee------cccCce---eeeeccCCccc----EEEeecC--cceEEEEecCCee
Confidence            98866655  678999999999999995      444443   778888 5444    8888876  5789999999999


Q ss_pred             EEEeC
Q 005235          703 RLYCH  707 (707)
Q Consensus       703 rlWdl  707 (707)
                      ++||+
T Consensus       477 ~l~dl  481 (537)
T KOG0274|consen  477 KLWDL  481 (537)
T ss_pred             EEEec
Confidence            99986

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=3.4e-24  Score=216.77  Aligned_cols=312  Identities=17%  Similarity=0.130  Sum_probs=247.0

Q ss_pred             CCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc-ccCcccceecccccccccccccceeeeeEEEcCcccc
Q 005235          288 KPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK-FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK  361 (707)
Q Consensus       288 k~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~-~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k  361 (707)
                      -+.+..|..     |.+|...+++|+++         +|+.. |--...+-+-.+++|+..|       ..+.       
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGg---------DD~AflW~~~~ge~~~eltgHKDSV-------t~~~-------  113 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGG---------DDLAFLWDISTGEFAGELTGHKDSV-------TCCS-------  113 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCC---------CceEEEEEccCCcceeEecCCCCce-------EEEE-------
Confidence            346777877     58998899999887         23443 4445566666777777765       4444       


Q ss_pred             ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCC
Q 005235          362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQ  440 (707)
Q Consensus       362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~  440 (707)
                                            |+.++.+|+||+.+|.|+||.+.+|.....+.. -+.+.-|.|+|.+ ..|++++.||
T Consensus       114 ----------------------FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DG  170 (399)
T KOG0296|consen  114 ----------------------FSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDG  170 (399)
T ss_pred             ----------------------EccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCC
Confidence                                  446667999999999999999999998888864 6778889999988 5788888999


Q ss_pred             eEEEEECCCCC--chhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEEe--ccCCCeEEEEEcCCCCEEEE
Q 005235          441 DVLILNTGLGN--EEEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRL--RHFKMVSSVEWHRRGDYLST  511 (707)
Q Consensus       441 ~V~lwd~~~~~--~~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~--~h~~~V~~v~~sp~g~~lat  511 (707)
                      .|.+|.+....  ..+.+++..+.+..|.     ++++..+++|++|+..+.......  .......++.++..+..++.
T Consensus       171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~  250 (399)
T KOG0296|consen  171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK  250 (399)
T ss_pred             cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence            99999998842  3566777777777665     888899999999999877654422  23456788899999999999


Q ss_pred             EeCCCCccEEEEEECCCCceeeeee---------ccCCCeEEEEEeC---CCCEEEEEe-CCeEEEEECCCCeEEEEEeC
Q 005235          512 VMPAGESRAIFMHQLSKKLSHRIPF---------KLHGLPVSSVFHP---TRSIFFVST-KKNIRVYDLLKQRLIKKLET  578 (707)
Q Consensus       512 ~s~dg~~~~V~Iwdl~~~~~~~~~~---------~~~~~V~~v~fsp---d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~  578 (707)
                      |+.++   .+++-...+++.. ..+         .+...+.||.|.|   .-+++++|+ ||+|.|||+.+.++.+.+ .
T Consensus       251 g~~e~---~~~~~~~~sgKVv-~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~  325 (399)
T KOG0296|consen  251 GNSEG---VACGVNNGSGKVV-NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-E  325 (399)
T ss_pred             ccCCc---cEEEEccccceEE-EecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-c
Confidence            98887   7777666665544 222         2334455555544   557788888 999999999988776665 4


Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          579 GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       579 ~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      |...|..+.|-+ ..+|++++.+|.|+.||.+++ ++..++.+|...|.+++++|+.++++|+|.|++.+||.+
T Consensus       326 he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  326 HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             CCCceEEEEEcC-cchheeeccCceEEeeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            667899999998 789999999999999999998 889999999999999999999999999999999999953

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=8.6e-24  Score=232.42  Aligned_cols=304  Identities=17%  Similarity=0.216  Sum_probs=244.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecC-CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh---cccccceeee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIG-EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE---QRRVKDLLHV  464 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~-~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~---~~~~~~v~~~  464 (707)
                      .+++.|-.+|+|.|+++..++.+.+|+.. +.|++++|..||...+++++..|.+.+||++......   ..|...+...
T Consensus       215 DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~  294 (910)
T KOG1539|consen  215 DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGA  294 (910)
T ss_pred             eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccc
Confidence            58999999999999999999999999994 9999999999997656666677999999998764421   1232333333


Q ss_pred             ccc-----ccccCCCCcEEEEecCCc-----cceEEeccCCCeEEEEEc-CCCCEEEEEeCCC-----------------
Q 005235          465 ETP-----TAPDDNMASIVSWLQHDK-----LDGIRLRHFKMVSSVEWH-RRGDYLSTVMPAG-----------------  516 (707)
Q Consensus       465 ~~~-----~~~~~~d~~i~iW~~~~~-----~~~~~~~h~~~V~~v~~s-p~g~~lat~s~dg-----------------  516 (707)
                      .|.     +.+++.|..+++|-...+     .+....+|..+..|+.|. .+|..+.+++.|.                 
T Consensus       295 ~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~  374 (910)
T KOG1539|consen  295 TFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELG  374 (910)
T ss_pred             eecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhc
Confidence            332     677778888888866532     223356899999999998 5777778877765                 


Q ss_pred             ---------------------------------------------CccEEEEEECCCCceeeeeecc------CCCeEEE
Q 005235          517 ---------------------------------------------ESRAIFMHQLSKKLSHRIPFKL------HGLPVSS  545 (707)
Q Consensus       517 ---------------------------------------------~~~~V~Iwdl~~~~~~~~~~~~------~~~V~~v  545 (707)
                                                                   +...++.|+++....-...+.+      ...++++
T Consensus       375 ~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av  454 (910)
T KOG1539|consen  375 QLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAV  454 (910)
T ss_pred             ccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEE
Confidence                                                         2334556666655542133333      3788999


Q ss_pred             EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE---eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235          546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL---ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l---~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                      +.++.|++.++|+ .|+|-+||+++|-...++   ..|..+|+.++...-++.+++++.+|-+.+||.... .+...++ 
T Consensus       455 ~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k-~l~~~l~-  532 (910)
T KOG1539|consen  455 CVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK-VLKKSLR-  532 (910)
T ss_pred             EEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc-ceeeeec-
Confidence            9999999999998 899999999999888888   478899999999988899999999999999999866 5666665 


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235          622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV  701 (707)
Q Consensus       622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~  701 (707)
                      -...+.++.+|....++|.+.+|-.|+|+|+      .+...   ++.|.||++.    |++++|||||+||++++.|++
T Consensus       533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~------~t~kv---vR~f~gh~nr----itd~~FS~DgrWlisasmD~t  599 (910)
T KOG1539|consen  533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDV------VTRKV---VREFWGHGNR----ITDMTFSPDGRWLISASMDST  599 (910)
T ss_pred             cCCCcceeeeeehhhhhhhhcCceeEEEEEc------hhhhh---hHHhhccccc----eeeeEeCCCCcEEEEeecCCc
Confidence            3567899999999999999999999999954      33333   7889999998    999999999999999999999


Q ss_pred             EEEEeC
Q 005235          702 IRLYCH  707 (707)
Q Consensus       702 IrlWdl  707 (707)
                      ||+||+
T Consensus       600 Ir~wDl  605 (910)
T KOG1539|consen  600 IRTWDL  605 (910)
T ss_pred             EEEEec
Confidence            999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=2.8e-25  Score=220.55  Aligned_cols=284  Identities=19%  Similarity=0.314  Sum_probs=228.5

Q ss_pred             CCCCCCCCCcc--ccCCCCCccCC---hhhhhhhhccCcCCCCcccCcccceecccccccccc-cccceeeeeEEEcCcc
Q 005235          286 APKPKLPGHEE--SYNPSLEYIPT---QEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAV-KDSFERCMDLYLCPRV  359 (707)
Q Consensus       286 apk~~lpgh~~--synP~ge~L~s---~~~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i-~e~f~rcldL~l~pr~  359 (707)
                      ..|.--..|.+  .|||+|.||++   ++.+..|+.+...-|+-.   +|      .+..++. -+....|+  .     
T Consensus       207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL---kY------QAqd~fMMmd~aVlci--~-----  270 (508)
T KOG0275|consen  207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL---KY------QAQDNFMMMDDAVLCI--S-----  270 (508)
T ss_pred             heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh---hh------hhhcceeecccceEEE--e-----
Confidence            34566677877  49999999999   667889986654433320   11      1112221 11111222  2     


Q ss_pred             ccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEE
Q 005235          360 RKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVS  437 (707)
Q Consensus       360 ~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s  437 (707)
                                              |+.+..++++|+.||.|+||.+.||.|++.|.-  ...|+|+.|+.|+ ..+++++
T Consensus       271 ------------------------FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~s  325 (508)
T KOG0275|consen  271 ------------------------FSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSAS  325 (508)
T ss_pred             ------------------------ecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhccc
Confidence                                    556667999999999999999999999999984  8899999999999 5899999


Q ss_pred             eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC
Q 005235          438 VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE  517 (707)
Q Consensus       438 ~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~  517 (707)
                      .|.++++--+.+|..                                  ...+.+|++.|+...|+++|.++++++.|| 
T Consensus       326 fD~tvRiHGlKSGK~----------------------------------LKEfrGHsSyvn~a~ft~dG~~iisaSsDg-  370 (508)
T KOG0275|consen  326 FDQTVRIHGLKSGKC----------------------------------LKEFRGHSSYVNEATFTDDGHHIISASSDG-  370 (508)
T ss_pred             ccceEEEeccccchh----------------------------------HHHhcCccccccceEEcCCCCeEEEecCCc-
Confidence            999999987766532                                  223669999999999999999999999999 


Q ss_pred             ccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECCCCeEEEEEeCCC---CCeEEEEEc
Q 005235          518 SRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLLKQRLIKKLETGL---KEVSSIAIH  589 (707)
Q Consensus       518 ~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~---~~I~sl~~s  589 (707)
                        +|+||+..+..+. .+|   +...+|.++..-|.+ ..++++. .++|.|.++. |+.++++..+.   +..-+.++|
T Consensus       371 --tvkvW~~KtteC~-~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS  446 (508)
T KOG0275|consen  371 --TVKVWHGKTTECL-STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS  446 (508)
T ss_pred             --cEEEecCcchhhh-hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence              9999999999988 777   445678888888855 5677777 7999999986 77888887543   335667789


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          590 PAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       590 pdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      |.|.++.+.+.|+.++.|.+.++ ++-.++.-|...|..++-||..++||+-+.||.+++|
T Consensus       447 pkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW  506 (508)
T KOG0275|consen  447 PKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW  506 (508)
T ss_pred             CCCcEEEEEccCcEEEEEEeecC-ceeeeeecccccccccccCcccchhhhhcccchhhhc
Confidence            99999999999999999999887 7888999999999999999999999999999999999

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=3.1e-23  Score=233.15  Aligned_cols=257  Identities=11%  Similarity=0.103  Sum_probs=193.9

Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccccc
Q 005235          393 KGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPD  471 (707)
Q Consensus       393 sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~  471 (707)
                      .|+.++.|++|+......+..+.+ .+.|.+++|+|+....|++++.|++|+||++.++......               
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---------------  113 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---------------  113 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---------------
Confidence            367789999999888777777776 7899999999974347888999999999998754211000               


Q ss_pred             CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEE-EEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCC
Q 005235          472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL-STVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPT  550 (707)
Q Consensus       472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-at~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd  550 (707)
                           +      ......+.+|...|.+++|+|++..+ ++++.|+   .|+|||+.++... ..+.+...|.+++|+|+
T Consensus       114 -----i------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg---tIrIWDl~tg~~~-~~i~~~~~V~Slswspd  178 (568)
T PTZ00420        114 -----I------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS---FVNIWDIENEKRA-FQINMPKKLSSLKWNIK  178 (568)
T ss_pred             -----c------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC---eEEEEECCCCcEE-EEEecCCcEEEEEECCC
Confidence                 0      00112356899999999999998764 6888888   9999999998766 56666678999999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEE-----EEEcCCCCEEEEEECCC----cEEEEECCCCCcceEEee
Q 005235          551 RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSS-----IAIHPAGDNLIVGSREG----KLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       551 ~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~s-----l~~spdg~~L~sGs~Dg----~I~vwDl~~~~~~~~~l~  620 (707)
                      |.+|++++ |+.|+|||+++++.+.++.+|.+.+.+     ..|++++.+|++++.|+    .|+|||++....++..+.
T Consensus       179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~  258 (568)
T PTZ00420        179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS  258 (568)
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence            99999887 899999999999999999999876443     34568899999988774    799999996557777654


Q ss_pred             cC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235          621 CH--PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP  691 (707)
Q Consensus       621 ~h--~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~  691 (707)
                      .+  .+.+.....++++.+|++|+.|++|++|++.      ... +..+..+. +..+    +.+++|.|...
T Consensus       259 ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~------~~~-~~~l~~~~-s~~p----~~g~~f~Pkr~  319 (568)
T PTZ00420        259 IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS------LGS-IRKVNEYK-SCSP----FRSFGFLPKQI  319 (568)
T ss_pred             ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc------CCc-EEeecccc-cCCC----ccceEEccccc
Confidence            33  3344444556678899999999999999653      221 11222222 3333    78889998643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.3e-24  Score=236.67  Aligned_cols=272  Identities=13%  Similarity=0.225  Sum_probs=201.0

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc------------c---ccceeeec------cc-ccccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR------------R---VKDLLHVE------TP-TAPDDNM  474 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~------------~---~~~v~~~~------~~-~~~~~~d  474 (707)
                      .+.|+++.||+|| ++|++||.|+.|+||.+.........            .   ..++....      .. ...+...
T Consensus       267 ~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s  345 (712)
T KOG0283|consen  267 KGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS  345 (712)
T ss_pred             CCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence            7999999999999 58999999999999997652110000            0   00000000      00 0011111


Q ss_pred             Cc----EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeC-
Q 005235          475 AS----IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP-  549 (707)
Q Consensus       475 ~~----i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp-  549 (707)
                      ..    ..++-+.....+.+.+|.+.|..++||.+ ++|++++.|.   +|++|++....+. ..|.|..-|+||+|+| 
T Consensus       346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDK---TVRLWh~~~~~CL-~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDK---TVRLWHPGRKECL-KVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             ccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccc---cEEeecCCCccee-eEEecCCeeEEEEeccc
Confidence            11    11122223344557899999999999965 6899999988   9999999999998 8999999999999999 


Q ss_pred             CCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee--cC----
Q 005235          550 TRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK--CH----  622 (707)
Q Consensus       550 d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h----  622 (707)
                      |.++|++|+ |+.||||++...+.+.-...+ .-|++++|.|+|+..++|+.+|.+++|+.... ++...+.  .|    
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~~~~~Kk  498 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIRLHNKKK  498 (712)
T ss_pred             CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEeeccCcc
Confidence            678899999 999999999988777655555 77999999999999999999999999998743 3333222  11    


Q ss_pred             --CCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235          623 --PKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD  699 (707)
Q Consensus       623 --~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D  699 (707)
                        ...|+++.|.|..+ .+++.+.|..|+|||+      .+..+   +..|+|+...  ..-....|+.||++|++|+.|
T Consensus       499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~------~~~~l---v~KfKG~~n~--~SQ~~Asfs~Dgk~IVs~seD  567 (712)
T KOG0283|consen  499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG------RDKDL---VHKFKGFRNT--SSQISASFSSDGKHIVSASED  567 (712)
T ss_pred             ccCceeeeeEecCCCCCeEEEecCCCceEEEec------cchhh---hhhhcccccC--CcceeeeEccCCCEEEEeecC
Confidence              12799999998655 4666778999999954      33333   5667776543  224567899999999999999


Q ss_pred             CcEEEEeC
Q 005235          700 SVIRLYCH  707 (707)
Q Consensus       700 g~IrlWdl  707 (707)
                      ..|+||++
T Consensus       568 s~VYiW~~  575 (712)
T KOG0283|consen  568 SWVYIWKN  575 (712)
T ss_pred             ceEEEEeC
Confidence            99999984

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.8e-24  Score=212.08  Aligned_cols=293  Identities=20%  Similarity=0.285  Sum_probs=233.7

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--------------h
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--------------E  453 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--------------~  453 (707)
                      .++.++|.|.+.+||.+++|+|+.++.+ .+.|+||.|++.+ ..+++++.|++-.||.....-+              .
T Consensus       161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE  239 (481)
T KOG0300|consen  161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE  239 (481)
T ss_pred             cceeecccccceeEEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence            3788999999999999999999999998 8999999999999 4778888999999997321100              0


Q ss_pred             hcccccceeeecccccccCCC-CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235          454 EQRRVKDLLHVETPTAPDDNM-ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH  532 (707)
Q Consensus       454 ~~~~~~~v~~~~~~~~~~~~d-~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~  532 (707)
                      ...+....-..   -.....| .+|++      .++.+.+|.+.|.+..|-..|+.+++++.|.   +..+||+.++...
T Consensus       240 ~e~sDe~~~d~---d~~~~sD~~tiRv------Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR---TAnlwDVEtge~v  307 (481)
T KOG0300|consen  240 EEHSDEHNRDT---DSSEKSDGHTIRV------PLMRLTGHRAVVSACDWLAGGQQMVTASWDR---TANLWDVETGEVV  307 (481)
T ss_pred             hhccccccccc---ccccccCCceeee------eeeeeeccccceEehhhhcCcceeeeeeccc---cceeeeeccCcee
Confidence            00000000000   0000011 12221      1234778999999999999999999999988   9999999999998


Q ss_pred             eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235          533 RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM  609 (707)
Q Consensus       533 ~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl  609 (707)
                       .++ +|....+.++-||..+++++++ |.+.|+||.+.. ..+..|++|...|+++.|.- +..+++||.|.+|+|||+
T Consensus       308 -~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~-dd~vVSgSDDrTvKvWdL  385 (481)
T KOG0300|consen  308 -NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT-DDRVVSGSDDRTVKVWDL  385 (481)
T ss_pred             -ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec-CCceeecCCCceEEEeee
Confidence             888 9999999999999999999988 999999999853 56788999999999999975 568999999999999999


Q ss_pred             CCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCccc-ceEEeeCCCCCCCCCeeEEEEcC
Q 005235          610 DLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV-PLEILRGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       610 ~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~-pl~~l~gh~~~~~~gV~~l~fsp  688 (707)
                      +....++.+++. ..+++.++.+..++++|.--++..|++|      |+..+.+.. |...-+||...    |.+++|..
T Consensus       386 rNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlf------DlnG~RlaRlPrtsRqgHrRM----V~c~AW~e  454 (481)
T KOG0300|consen  386 RNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLF------DLNGNRLARLPRTSRQGHRRM----VTCCAWLE  454 (481)
T ss_pred             ccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEE------ecCCCccccCCccccccccee----eeeeeccc
Confidence            988889998884 5789999999999999999999999999      554444321 23345688877    99999986


Q ss_pred             CCC--EEEEEeCCCcEEEEeC
Q 005235          689 RQP--WLFTAGADSVIRLYCH  707 (707)
Q Consensus       689 dg~--~L~s~g~Dg~IrlWdl  707 (707)
                      +-+  -|+++|.|..+.-|++
T Consensus       455 ehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  455 EHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             cCcccccccccccceeeeeEe
Confidence            655  4899999999999975

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.3e-23  Score=207.86  Aligned_cols=265  Identities=22%  Similarity=0.274  Sum_probs=204.4

Q ss_pred             CCcccCCCCcEEEEEeCCCcEEEEeCCC-CeEEEE--EecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235          380 DLKPYPVACYLEYKGSTDGTVRIWEVES-GRCLRV--LEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR  456 (707)
Q Consensus       380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~t-g~~l~~--l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~  456 (707)
                      +|...|....+++.||-||+||+|+++. |..+-.  ..+.++|.+++|+.+| ..+++++.|+.+++||+.++.     
T Consensus        32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q-----  105 (347)
T KOG0647|consen   32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQ-----  105 (347)
T ss_pred             eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCC-----
Confidence            3433444556788999999999999986 554432  2338999999999999 589999999999999987652     


Q ss_pred             cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC--EEEEEeCCCCccEEEEEECCCCceeee
Q 005235          457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD--YLSTVMPAGESRAIFMHQLSKKLSHRI  534 (707)
Q Consensus       457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~--~lat~s~dg~~~~V~Iwdl~~~~~~~~  534 (707)
                                                    ...+..|.++|.++.|-+...  .|+||+.|.   +|+.||.+..... .
T Consensus       106 ------------------------------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK---TlKfWD~R~~~pv-~  151 (347)
T KOG0647|consen  106 ------------------------------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK---TLKFWDTRSSNPV-A  151 (347)
T ss_pred             ------------------------------eeeeeecccceeEEEEecCCCcceeEeccccc---ceeecccCCCCee-e
Confidence                                          224568999999999988766  899999998   9999999977666 5


Q ss_pred             eeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeE-EEEEeCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235          535 PFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRL-IKKLETGL-KEVSSIAIHPAGDNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       535 ~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~-~~~l~~~~-~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~  611 (707)
                      .+.....+.++..-  .+++++++ ++.|.+|+|+.+.. .+...... -.+.||++.++.+..+.|+-.|++.|..++.
T Consensus       152 t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~  229 (347)
T KOG0647|consen  152 TLQLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDD  229 (347)
T ss_pred             eeeccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCC
Confidence            66667777766543  46788887 99999999987633 22333222 2389999999999999999999999999987


Q ss_pred             CC-cceEEeecCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCe
Q 005235          612 SS-KPYRVLKCHPK---------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGV  681 (707)
Q Consensus       612 ~~-~~~~~l~~h~~---------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV  681 (707)
                      +. +.-.+|+.|..         +|++|+|||....|++++.||+..+||-.      ....   ++....|..+    |
T Consensus       230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd------ar~k---Lk~s~~~~qp----I  296 (347)
T KOG0647|consen  230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD------ARTK---LKTSETHPQP----I  296 (347)
T ss_pred             CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch------hhhh---hhccCcCCCc----c
Confidence            41 33446777763         58899999999999999999999999642      2211   5566667776    9


Q ss_pred             eEEEEcCCCCEEEEE-eCC
Q 005235          682 MDCKFHPRQPWLFTA-GAD  699 (707)
Q Consensus       682 ~~l~fspdg~~L~s~-g~D  699 (707)
                      ++++|+.+|.++|.+ |.|
T Consensus       297 tcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  297 TCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             ceeEecCCCCEEEEEeecc
Confidence            999999999988655 444

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=1.1e-22  Score=228.66  Aligned_cols=220  Identities=10%  Similarity=0.005  Sum_probs=166.9

Q ss_pred             CCCcEEEEecCCcc-ceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCce-------eeeee-ccCCCe
Q 005235          473 NMASIVSWLQHDKL-DGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLS-------HRIPF-KLHGLP  542 (707)
Q Consensus       473 ~d~~i~iW~~~~~~-~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~-------~~~~~-~~~~~V  542 (707)
                      ..+.+.+|+..... ...+.+|.+.|.+++|+|+ +.+||+|+.|+   .|+||++.....       ....+ .|...|
T Consensus        52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dg---tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDL---TIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCC---eEEEEECCCCCccccccccceEEeecCCCcE
Confidence            34556666654332 2346789999999999996 78999999998   999999976421       11345 788999


Q ss_pred             EEEEEeCCCCEE-EEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235          543 VSSVFHPTRSIF-FVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       543 ~~v~fspd~~~l-~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~  620 (707)
                      .+++|+|++..+ ++++ |++|+|||+.+++.+..+. +...|.+++|+|+|.+|++++.|+.|+|||++++ .++..+.
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-~~i~tl~  206 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-EIASSFH  206 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-cEEEEEe
Confidence            999999998765 5666 9999999999998777776 4578999999999999999999999999999987 6778899


Q ss_pred             cCCCCEEE-----EEEcCCCCEEEEEeCCC----cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235          621 CHPKDITN-----VAFHRSYPLFASCSDDC----TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP  691 (707)
Q Consensus       621 ~h~~~I~~-----vafspdg~llaSgs~Dg----~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~  691 (707)
                      +|.+.+.+     ..|++++.+|++++.|+    +|+|||++..      .  .|+..+..+...  ..+......+++.
T Consensus       207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~------~--~pl~~~~ld~~~--~~L~p~~D~~tg~  276 (568)
T PTZ00420        207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT------T--SALVTMSIDNAS--APLIPHYDESTGL  276 (568)
T ss_pred             cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC------C--CceEEEEecCCc--cceEEeeeCCCCC
Confidence            99876543     34568889999888764    7999965421      1  234444333321  0133344455688


Q ss_pred             EEEEEeCCCcEEEEeC
Q 005235          692 WLFTAGADSVIRLYCH  707 (707)
Q Consensus       692 ~L~s~g~Dg~IrlWdl  707 (707)
                      ++++|+.|++|++|++
T Consensus       277 l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQH  292 (568)
T ss_pred             EEEEEECCCeEEEEEc
Confidence            8999999999999985

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.4e-22  Score=202.48  Aligned_cols=267  Identities=18%  Similarity=0.238  Sum_probs=212.2

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhcccccc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      |..++.++++++.|.+|+|||..+|.+++++.. .-.|..++|..... .++.++.  |.+|+..++.+.          
T Consensus        22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dN----------   90 (311)
T KOG1446|consen   22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDN----------   90 (311)
T ss_pred             ecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc-eEEEccCCCCCceEEEEeecC----------
Confidence            566778999999999999999999999999988 66788888877663 5666665  678888776543          


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCC
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHG  540 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~  540 (707)
                                              +.+..+.+|...|.+++.+|-++.|++++.|.   +|++||++...++ ..+...+
T Consensus        91 ------------------------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~---tvrLWDlR~~~cq-g~l~~~~  142 (311)
T KOG1446|consen   91 ------------------------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDK---TVRLWDLRVKKCQ-GLLNLSG  142 (311)
T ss_pred             ------------------------ceEEEcCCCCceEEEEEecCCCCeEEecccCC---eEEeeEecCCCCc-eEEecCC
Confidence                                    22234679999999999999999999999998   9999999988876 4442222


Q ss_pred             CeEEEEEeCCCCEEEEEeC-CeEEEEECCCC--eEEEEEeCC---CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235          541 LPVSSVFHPTRSIFFVSTK-KNIRVYDLLKQ--RLIKKLETG---LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK  614 (707)
Q Consensus       541 ~V~~v~fspd~~~l~v~sd-g~I~iwDl~~~--~~~~~l~~~---~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~  614 (707)
                       -..++|.|.|-++|++.. ..|++||++.-  .+..++...   ....+.|.|||+|++|+.++..+.++|.|.-.| .
T Consensus       143 -~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~  220 (311)
T KOG1446|consen  143 -RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-T  220 (311)
T ss_pred             -CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-c
Confidence             235799999999999984 59999999863  344444433   466899999999999999999999999999887 5


Q ss_pred             ceEEeecCCCCE---EEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC-CCCCCCCCeeEEEEcCCC
Q 005235          615 PYRVLKCHPKDI---TNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG-HTSSNGRGVMDCKFHPRQ  690 (707)
Q Consensus       615 ~~~~l~~h~~~I---~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~~~~~gV~~l~fspdg  690 (707)
                      ...++..+...-   -+.+|+|+++++++|++||+|.+|++.      ++.   .+..+++ +...    +.++.|.|.-
T Consensus       221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~------tg~---~v~~~~~~~~~~----~~~~~fnP~~  287 (311)
T KOG1446|consen  221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE------TGK---KVAVLRGPNGGP----VSCVRFNPRY  287 (311)
T ss_pred             EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC------CCc---EeeEecCCCCCC----ccccccCCce
Confidence            778888776543   578899999999999999999999653      332   3677777 5665    9999999976


Q ss_pred             CEEEEEeCCCcEEEEe
Q 005235          691 PWLFTAGADSVIRLYC  706 (707)
Q Consensus       691 ~~L~s~g~Dg~IrlWd  706 (707)
                      ..++|+  +..+-+|-
T Consensus       288 ~mf~sa--~s~l~fw~  301 (311)
T KOG1446|consen  288 AMFVSA--SSNLVFWL  301 (311)
T ss_pred             eeeeec--CceEEEEe
Confidence            666665  45777773

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=8.9e-25  Score=210.72  Aligned_cols=228  Identities=15%  Similarity=0.188  Sum_probs=203.0

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      .+....++++.|-+.+|||..||..+.+|++...|.+++|+.|. ..|++++.+.-++|+|++..+..            
T Consensus        69 ~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~Ap------------  135 (334)
T KOG0278|consen   69 KNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAP------------  135 (334)
T ss_pred             chhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCC------------
Confidence            34456778899999999999999999999999999999999998 48999999999999997664321            


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEE
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSS  545 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v  545 (707)
                                           ...+.+|.+.|..+.|....+.|++.+.|+   +|++||.+++... ..+..+.+|+++
T Consensus       136 ---------------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~---tVRLWD~rTgt~v-~sL~~~s~VtSl  190 (334)
T KOG0278|consen  136 ---------------------PKEISGHTGGIRTVLWCHEDKCILSSADDK---TVRLWDHRTGTEV-QSLEFNSPVTSL  190 (334)
T ss_pred             ---------------------chhhcCCCCcceeEEEeccCceEEeeccCC---ceEEEEeccCcEE-EEEecCCCCcce
Confidence                                 112558999999999999889999988887   9999999999988 888888999999


Q ss_pred             EEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-ecCCC
Q 005235          546 VFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-KCHPK  624 (707)
Q Consensus       546 ~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~  624 (707)
                      ..+++|.+|.++..+.|.+||..+-.+++.+... ..|.+..++|+...+++|+.|..++.||..++. .+..+ ++|-+
T Consensus       191 Evs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge-Ei~~~nkgh~g  268 (334)
T KOG0278|consen  191 EVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE-EIGSYNKGHFG  268 (334)
T ss_pred             eeccCCCEEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCc-eeeecccCCCC
Confidence            9999999999999999999999999999888766 568999999999999999999999999999984 45554 89999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          625 DITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      +|.||.|+|+|.+.|+||.||+|+||.+.
T Consensus       269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  269 PVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             ceEEEEECCCCceeeccCCCceEEEEEec
Confidence            99999999999999999999999999654

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=3e-22  Score=223.95  Aligned_cols=234  Identities=13%  Similarity=0.111  Sum_probs=181.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEE-------------EEec-CCcEEEEEEcc-CCCccEEEEEeCCeEEEEECCCCCc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLR-------------VLEI-GEAIQYVAWNP-LPELPVLAVSVGQDVLILNTGLGNE  452 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~-------------~l~~-~~~V~~v~~sp-dg~~~lla~s~d~~V~lwd~~~~~~  452 (707)
                      +..+++++.+..+..|+...|..+.             .+.+ .+.|.+++|+| ++ ..|++++.|++|++|++..+..
T Consensus        32 ~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~  110 (493)
T PTZ00421         32 CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGL  110 (493)
T ss_pred             CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCcc
Confidence            3456677777777777765443331             1222 67899999999 66 4788899999999999865421


Q ss_pred             hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCce
Q 005235          453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLS  531 (707)
Q Consensus       453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~  531 (707)
                      ...                           .......+.+|...|.+++|+|++ ++|++++.|+   .|+|||+.++..
T Consensus       111 ~~~---------------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg---tVrIWDl~tg~~  160 (493)
T PTZ00421        111 TQN---------------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM---VVNVWDVERGKA  160 (493)
T ss_pred             ccc---------------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC---EEEEEECCCCeE
Confidence            000                           001122356899999999999985 6999999988   999999999877


Q ss_pred             eeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC-eEEEEEcCCCCEEEEEE----CCCcE
Q 005235          532 HRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKE-VSSIAIHPAGDNLIVGS----REGKL  604 (707)
Q Consensus       532 ~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~-I~sl~~spdg~~L~sGs----~Dg~I  604 (707)
                      . ..+ .|...|.+++|+|++.+|++++ |++|+|||+++++.+..+.+|.+. +..+.|++++..|++++    .|+.|
T Consensus       161 ~-~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V  239 (493)
T PTZ00421        161 V-EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI  239 (493)
T ss_pred             E-EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence            6 777 7889999999999999999998 999999999999999999888754 45678899888887654    47899


Q ss_pred             EEEECCCCCcceEEeecCC-CCEEEEEEcCCCCEEEEEe-CCCcEEEEecc
Q 005235          605 CWFDMDLSSKPYRVLKCHP-KDITNVAFHRSYPLFASCS-DDCTAYVFHGM  653 (707)
Q Consensus       605 ~vwDl~~~~~~~~~l~~h~-~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~  653 (707)
                      ++||++....++.....+. ..+..+.|++++.+|++|+ .||.|++|++.
T Consensus       240 klWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        240 MLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             EEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence            9999987766776665443 4566778999999998887 59999999653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.2e-22  Score=189.47  Aligned_cols=280  Identities=20%  Similarity=0.303  Sum_probs=217.6

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCC------CC----------eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVE------SG----------RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT  447 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~------tg----------~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~  447 (707)
                      |.+.+.+.+.||...++||.-..      .+          .|.+.-.+.+.|.|++|+|.|+ .|++++.|.+|++.-+
T Consensus        40 fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~f  118 (350)
T KOG0641|consen   40 FHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPF  118 (350)
T ss_pred             ecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCCceEEEEec
Confidence            55566788899999999987532      11          1222222389999999999994 5667778889988776


Q ss_pred             CCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC----CCCEEEEEeCCCCccEEEE
Q 005235          448 GLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR----RGDYLSTVMPAGESRAIFM  523 (707)
Q Consensus       448 ~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp----~g~~lat~s~dg~~~~V~I  523 (707)
                      +.......++                             ...+.-|.+.|..++|..    .|..|++++. | +..|.+
T Consensus       119 n~dt~~~~g~-----------------------------dle~nmhdgtirdl~fld~~~s~~~il~s~ga-g-dc~iy~  167 (350)
T KOG0641|consen  119 NADTCNATGH-----------------------------DLEFNMHDGTIRDLAFLDDPESGGAILASAGA-G-DCKIYI  167 (350)
T ss_pred             ccccccccCc-----------------------------ceeeeecCCceeeeEEecCCCcCceEEEecCC-C-cceEEE
Confidence            5432221111                             113557899999999954    3556776664 2 458888


Q ss_pred             EECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC-------CCCCeEEEEEcCCCCE
Q 005235          524 HQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET-------GLKEVSSIAIHPAGDN  594 (707)
Q Consensus       524 wdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~-------~~~~I~sl~~spdg~~  594 (707)
                      -|..+++.. ..+ +|.+.|.++ ++-++-.|++|+ |.+||+||++-..++.++..       ....|.++++.|.|++
T Consensus       168 tdc~~g~~~-~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl  245 (350)
T KOG0641|consen  168 TDCGRGQGF-HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL  245 (350)
T ss_pred             eecCCCCcc-eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence            888888776 777 899998876 344577888888 89999999999888887653       1256999999999999


Q ss_pred             EEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC
Q 005235          595 LIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT  674 (707)
Q Consensus       595 L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~  674 (707)
                      |++|-.|....+||++-+ ++++.+..|+..|++|.|||...+|.+||.|..|++-|+.  +|+...   .|+.....|.
T Consensus       246 l~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq--gdla~e---l~~~vv~ehk  319 (350)
T KOG0641|consen  246 LASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ--GDLAHE---LPIMVVAEHK  319 (350)
T ss_pred             eeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc--cchhhc---CceEEEEecc
Confidence            999999999999999965 9999999999999999999999999999999999999653  133222   2466777888


Q ss_pred             CCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          675 SSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       675 ~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ..    +..+.|||+.--+++.++|.++.+|.+
T Consensus       320 dk----~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  320 DK----AIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             Cc----eEEEEecCccceeeeccCcceEEEecc
Confidence            87    999999999988999999999999964

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.5e-24  Score=227.90  Aligned_cols=279  Identities=15%  Similarity=0.204  Sum_probs=220.7

Q ss_pred             CCCCcccCCCCcEEEEEeCCCcEEEEeCCCCe------EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC
Q 005235          378 RKDLKPYPVACYLEYKGSTDGTVRIWEVESGR------CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG  450 (707)
Q Consensus       378 ~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~------~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~  450 (707)
                      ...|++-.....+|||||.||.|++|++..-.      ++.++++ .+.|+.++.+.+++ .+++++.|-+|++|+...+
T Consensus        27 ~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~  105 (735)
T KOG0308|consen   27 TKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKD  105 (735)
T ss_pred             hhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccC
Confidence            34555656677799999999999999986422      3555655 88999999999994 7999999999999997654


Q ss_pred             CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE-cCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235          451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW-HRRGDYLSTVMPAGESRAIFMHQLSKK  529 (707)
Q Consensus       451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~-sp~g~~lat~s~dg~~~~V~Iwdl~~~  529 (707)
                      ..                                .....+..|...|.|+++ -++...+|+|+.|+   .|.+||++++
T Consensus       106 ~~--------------------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~---~IflWDin~~  150 (735)
T KOG0308|consen  106 NT--------------------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR---KIFLWDINTG  150 (735)
T ss_pred             cc--------------------------------hhHhhhhcccchheeeeecccCceeEEecCCCc---cEEEEEccCc
Confidence            20                                011235689999999999 77888999999988   9999999977


Q ss_pred             ce--e-------eeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEE
Q 005235          530 LS--H-------RIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIV  597 (707)
Q Consensus       530 ~~--~-------~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~s  597 (707)
                      ..  .       ...+  ++...|.+++.++.|..|++|+ ++.+++||.++++.+.+|.+|...|.++.++++|..+++
T Consensus       151 ~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls  230 (735)
T KOG0308|consen  151 TATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS  230 (735)
T ss_pred             chhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEee
Confidence            33  1       0112  5677899999999998888777 899999999999999999999999999999999999999


Q ss_pred             EECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCC
Q 005235          598 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSN  677 (707)
Q Consensus       598 Gs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~  677 (707)
                      ||.||+|++||+... +++.++..|...|+++..+|+-..+++|+.||.|..=+++.+      ..  ....++ ...+ 
T Consensus       231 ~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~------~~--~tlick-~daP-  299 (735)
T KOG0308|consen  231 ASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP------AK--STLICK-EDAP-  299 (735)
T ss_pred             cCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc------hh--heEeec-CCCc-
Confidence            999999999999866 899999999999999999999999999999999998855432      11  111222 1222 


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          678 GRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       678 ~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                         |..+..+.+..-+-+++.|+.|+-|.
T Consensus       300 ---v~~l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  300 ---VLKLHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             ---hhhhhhccccCCceeeeccccceecC
Confidence               66666663333334556678888774

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=2.7e-23  Score=216.00  Aligned_cols=264  Identities=16%  Similarity=0.249  Sum_probs=203.9

Q ss_pred             EEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEec
Q 005235          413 VLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLR  492 (707)
Q Consensus       413 ~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~  492 (707)
                      .+.+.+.|+.+.+.|+....+++.+.++.|.|||...........             +           .......+.+
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-------------~-----------~~~Pdl~L~g  175 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-------------G-----------ECRPDLRLKG  175 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-------------c-----------cCCCceEEEe
Confidence            456689999999999985334444567899999976542211000             0           0011124668


Q ss_pred             cCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCcee------eeee-ccCCCeEEEEEeCCCCEEE-EEe-CCeE
Q 005235          493 HFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSH------RIPF-KLHGLPVSSVFHPTRSIFF-VST-KKNI  562 (707)
Q Consensus       493 h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~------~~~~-~~~~~V~~v~fspd~~~l~-v~s-dg~I  562 (707)
                      |...-.+++|++.. .+|++++.|+   .|++||+......      ...| .|...|..++||+....++ +++ |+.+
T Consensus       176 H~~eg~glsWn~~~~g~Lls~~~d~---~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L  252 (422)
T KOG0264|consen  176 HEKEGYGLSWNRQQEGTLLSGSDDH---TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKL  252 (422)
T ss_pred             ecccccccccccccceeEeeccCCC---cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeE
Confidence            88888899999854 5788899888   9999999765441      1345 8999999999999765544 444 8999


Q ss_pred             EEEECC--CCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCC-CEE
Q 005235          563 RVYDLL--KQRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSY-PLF  638 (707)
Q Consensus       563 ~iwDl~--~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg-~ll  638 (707)
                      .|||++  +.++.+...+|.+.|.|++|+|-+ ..||+||.|++|++||++....++.++.+|...|.+|.|||.. .+|
T Consensus       253 ~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvL  332 (422)
T KOG0264|consen  253 MIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVL  332 (422)
T ss_pred             EEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCcee
Confidence            999999  567778888999999999999965 5678999999999999999889999999999999999999965 599


Q ss_pred             EEEeCCCcEEEEecccccCCC-----CCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeC
Q 005235          639 ASCSDDCTAYVFHGMVYSDLN-----QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL-FTAGADSVIRLYCH  707 (707)
Q Consensus       639 aSgs~Dg~I~Vwd~~~~~Dl~-----~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L-~s~g~Dg~IrlWdl  707 (707)
                      ||++.|+.+.|||+...+.-.     +.....++..-.||+..    |.++.|+|..+|+ +|++.|+.+.||..
T Consensus       333 ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k----V~DfsWnp~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  333 ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK----VSDFSWNPNEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             EecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccc----cccccCCCCCCeEEEEecCCceEEEeec
Confidence            999999999999876432221     11112245666788887    9999999999985 78899999999963

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=9.4e-22  Score=206.59  Aligned_cols=263  Identities=11%  Similarity=0.124  Sum_probs=192.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccE-EEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPV-LAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~l-la~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++++.|+.|++||+.+++++..+.....+.+++|+|++. .+ ++++.++.|.+|++.++...              
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~-~l~~~~~~~~~v~~~d~~~~~~~--------------   66 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGK-LLYVCASDSDTIQVIDLATGEVI--------------   66 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCC-EEEEEECCCCeEEEEECCCCcEE--------------
Confidence            478899999999999999999999988766688999999994 44 34456789999997654211              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeeccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~  546 (707)
                                          ..+.. ...+..++|+|+|+.+++++ .++   .|.+||+.+.... ..+.....+.+++
T Consensus        67 --------------------~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~---~l~~~d~~~~~~~-~~~~~~~~~~~~~  121 (300)
T TIGR03866        67 --------------------GTLPS-GPDPELFALHPNGKILYIANEDDN---LVTVIDIETRKVL-AEIPVGVEPEGMA  121 (300)
T ss_pred             --------------------EeccC-CCCccEEEECCCCCEEEEEcCCCC---eEEEEECCCCeEE-eEeeCCCCcceEE
Confidence                                00111 22356789999999876654 455   9999999887655 5554445678899


Q ss_pred             EeCCCCEEEEEe-C-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcceEEeecCC
Q 005235          547 FHPTRSIFFVST-K-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPYRVLKCHP  623 (707)
Q Consensus       547 fspd~~~l~v~s-d-g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~~~l~~h~  623 (707)
                      |+|++.+++++. + ..+.+||+.+++.+..+..+ ..+.+++|+|+|.+|+++ ..++.|.+||+.++ +.+..+..+.
T Consensus       122 ~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~  199 (300)
T TIGR03866       122 VSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEI  199 (300)
T ss_pred             ECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecc
Confidence            999999999887 4 45788899988777665443 346789999999988655 46899999999876 5555554322


Q ss_pred             C-------CEEEEEEcCCCCEEE-EEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235          624 K-------DITNVAFHRSYPLFA-SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT  695 (707)
Q Consensus       624 ~-------~I~~vafspdg~lla-Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s  695 (707)
                      .       ....++|+|++++++ +.+.++.|.+||.      .+...   +..+. +...    +.+++|+|++.+|++
T Consensus       200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~------~~~~~---~~~~~-~~~~----~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA------KTYEV---LDYLL-VGQR----VWQLAFTPDEKYLLT  265 (300)
T ss_pred             cccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC------CCCcE---EEEEE-eCCC----cceEEECCCCCEEEE
Confidence            1       234688999999754 4456778999954      33332   23332 2223    899999999999988


Q ss_pred             E-eCCCcEEEEeC
Q 005235          696 A-GADSVIRLYCH  707 (707)
Q Consensus       696 ~-g~Dg~IrlWdl  707 (707)
                      + +.+|.|++||+
T Consensus       266 ~~~~~~~i~v~d~  278 (300)
T TIGR03866       266 TNGVSNDVSVIDV  278 (300)
T ss_pred             EcCCCCeEEEEEC
Confidence            6 56999999985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=1.3e-21  Score=204.81  Aligned_cols=289  Identities=15%  Similarity=0.175  Sum_probs=225.4

Q ss_pred             eCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-----hcc-cccceeeeccc
Q 005235          395 STDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-----EQR-RVKDLLHVETP  467 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-----~~~-~~~~v~~~~~~  467 (707)
                      |.+..+.|||...+..+..... ++.|....|+|.+. .+++.+.-+.+.+|++..+...     ..+ ..+.++++.|.
T Consensus       177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~-nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~  255 (626)
T KOG2106|consen  177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP-NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL  255 (626)
T ss_pred             CCccccchhhchhhhccCcceeccceEEEEEeccCCC-cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence            5567788999988877766665 78899999999984 7888888899999999887431     111 22667888887


Q ss_pred             ----ccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc------------
Q 005235          468 ----TAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL------------  530 (707)
Q Consensus       468 ----~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~------------  530 (707)
                          +.++.++|.|.+|+..+..... ...|.+.|.+++...+|..|- |+.|.   .|..||-.-..            
T Consensus       256 engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDR---ki~~Wd~~y~k~r~~elPe~~G~  331 (626)
T KOG2106|consen  256 ENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDR---KIILWDDNYRKLRETELPEQFGP  331 (626)
T ss_pred             CCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccc---eEEeccccccccccccCchhcCC
Confidence                8999999999999986554432 448999999999999998665 88766   99999832110            


Q ss_pred             -----------------------------eeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC
Q 005235          531 -----------------------------SHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL  580 (707)
Q Consensus       531 -----------------------------~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~  580 (707)
                                                   .+ ..++|......++.||+...+++++ |+++++|+  ..+++.+.... 
T Consensus       332 iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~-  407 (626)
T KOG2106|consen  332 IRTVAEGKGDILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE-  407 (626)
T ss_pred             eeEEecCCCcEEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec-
Confidence                                         00 1125566788899999999999988 89999999  55666555443 


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCC
Q 005235          581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQ  660 (707)
Q Consensus       581 ~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~  660 (707)
                      .++.|++|||.| .||+|+..|...+.|.++. ..+..-.. +.++++|+|+|+|.+||.||.|+.|+||.+..     .
T Consensus       408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~-----~  479 (626)
T KOG2106|consen  408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA-----N  479 (626)
T ss_pred             CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC-----C
Confidence            678999999999 9999999999999999874 44444443 88999999999999999999999999996531     2


Q ss_pred             CCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          661 NPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       661 ~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      +.....+....|  ..    |+.+.||+|+++|.+-+.|-.|..|.
T Consensus       480 g~~y~r~~k~~g--s~----ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  480 GRKYSRVGKCSG--SP----ITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             CcEEEEeeeecC--ce----eEEeeecCCCceEEeccCceEEEEEc
Confidence            222222333344  44    99999999999999999999999993

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3e-23  Score=229.97  Aligned_cols=184  Identities=18%  Similarity=0.260  Sum_probs=156.4

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT  468 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~  468 (707)
                      ++|+++|.|.|||||++....|+++|.+.+.|+||+|+|-.+.++++|+.|+.|+||++.                    
T Consensus       381 ~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~--------------------  440 (712)
T KOG0283|consen  381 NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS--------------------  440 (712)
T ss_pred             CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecC--------------------
Confidence            489999999999999999999999999999999999999888899999999999999975                    


Q ss_pred             cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---cc------C
Q 005235          469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KL------H  539 (707)
Q Consensus       469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~------~  539 (707)
                           +..|..|+          .....|++++|.|+|++.+.|+.+|   .+++|+....+.+ ..+   -+      .
T Consensus       441 -----d~~Vv~W~----------Dl~~lITAvcy~PdGk~avIGt~~G---~C~fY~t~~lk~~-~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  441 -----DKKVVDWN----------DLRDLITAVCYSPDGKGAVIGTFNG---YCRFYDTEGLKLV-SDFHIRLHNKKKKQG  501 (712)
T ss_pred             -----cCeeEeeh----------hhhhhheeEEeccCCceEEEEEecc---EEEEEEccCCeEE-EeeeEeeccCccccC
Confidence                 34566663          3347899999999999999999999   9999999887765 333   11      2


Q ss_pred             CCeEEEEEeCCCC--EEEEEeCCeEEEEECCCCeEEEEEeCCCCC--eEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235          540 GLPVSSVFHPTRS--IFFVSTKKNIRVYDLLKQRLIKKLETGLKE--VSSIAIHPAGDNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       540 ~~V~~v~fspd~~--~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~--I~sl~~spdg~~L~sGs~Dg~I~vwDl~~  611 (707)
                      ..|+.+.|.|..+  .|+++.|..|||||+++..++.+|++..+.  -....|+.+|++|++|+.|..|++|+++.
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            3799999998655  555556999999999988899888875433  34668889999999999999999999853

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.91  E-value=1.2e-22  Score=206.42  Aligned_cols=246  Identities=15%  Similarity=0.131  Sum_probs=201.3

Q ss_pred             CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc
Q 005235          408 GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD  487 (707)
Q Consensus       408 g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~  487 (707)
                      .+.+..+.+.+.|.+|...+.   .|++++.||.+++|+...                                   ...
T Consensus        96 P~pl~~~~hdDWVSsv~~~~~---~IltgsYDg~~riWd~~G-----------------------------------k~~  137 (423)
T KOG0313|consen   96 PKPLQCFLHDDWVSSVKGASK---WILTGSYDGTSRIWDLKG-----------------------------------KSI  137 (423)
T ss_pred             CCccccccchhhhhhhcccCc---eEEEeecCCeeEEEecCC-----------------------------------ceE
Confidence            344555666778888887733   699999999988888533                                   233


Q ss_pred             eEEeccCCCeEEEEEcCCCC---EEEEEeCCCCccEEEEEECCCCceeee---ee-ccCCCeEEEEEeCCCCEEEEEe-C
Q 005235          488 GIRLRHFKMVSSVEWHRRGD---YLSTVMPAGESRAIFMHQLSKKLSHRI---PF-KLHGLPVSSVFHPTRSIFFVST-K  559 (707)
Q Consensus       488 ~~~~~h~~~V~~v~~sp~g~---~lat~s~dg~~~~V~Iwdl~~~~~~~~---~~-~~~~~V~~v~fspd~~~l~v~s-d  559 (707)
                      ....+|.++|.+++|.-...   .|++++.|.   ++++|.+..+.....   .. +|+..|.+|...+++..+++|+ |
T Consensus       138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dq---tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D  214 (423)
T KOG0313|consen  138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQ---TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD  214 (423)
T ss_pred             EEEecCCcceeeeEEEecCCccceEEEecCCc---eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc
Confidence            35679999999999965444   599999987   999999988765421   12 8999999999999999999999 9


Q ss_pred             CeEEEEECC-------------------------CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235          560 KNIRVYDLL-------------------------KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK  614 (707)
Q Consensus       560 g~I~iwDl~-------------------------~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~  614 (707)
                      .+|.||+..                         ++.++.++.+|..+|+++.|++ ...++++|.|.+|+.||+.++ .
T Consensus       215 ~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg-~  292 (423)
T KOG0313|consen  215 TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG-G  292 (423)
T ss_pred             ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc-c
Confidence            999999931                         1235667889999999999997 779999999999999999998 5


Q ss_pred             ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE-E
Q 005235          615 PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW-L  693 (707)
Q Consensus       615 ~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~-L  693 (707)
                      ...++.+ ...++++.++|...+||+||.|..|++||-      ..+..-.+...|.||.+.    |.+|.|+|...+ |
T Consensus       293 ~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DP------R~~~gs~v~~s~~gH~nw----Vssvkwsp~~~~~~  361 (423)
T KOG0313|consen  293 LKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDP------RTGDGSVVSQSLIGHKNW----VSSVKWSPTNEFQL  361 (423)
T ss_pred             ceeeeec-CcceeEeecccccceeeecCCCCceeecCC------CCCCCceeEEeeecchhh----hhheecCCCCceEE
Confidence            5555553 577999999999999999999999999954      444444567899999998    999999998875 6


Q ss_pred             EEEeCCCcEEEEeC
Q 005235          694 FTAGADSVIRLYCH  707 (707)
Q Consensus       694 ~s~g~Dg~IrlWdl  707 (707)
                      ++|+.|+++++||+
T Consensus       362 ~S~S~D~t~klWDv  375 (423)
T KOG0313|consen  362 VSGSYDNTVKLWDV  375 (423)
T ss_pred             EEEecCCeEEEEEe
Confidence            89999999999995

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1e-22  Score=197.25  Aligned_cols=200  Identities=18%  Similarity=0.237  Sum_probs=170.8

Q ss_pred             ccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE-EEEEe-CCeEEEEEC
Q 005235          492 RHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI-FFVST-KKNIRVYDL  567 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~-l~v~s-dg~I~iwDl  567 (707)
                      .-...+..|+|+++. +.+++++.||   +++|||+.........| .|...|.++.|++..+. +++++ |++|++|+.
T Consensus        58 d~~D~LfdV~Wse~~e~~~~~a~GDG---SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~  134 (311)
T KOG0277|consen   58 DTEDGLFDVAWSENHENQVIAASGDG---SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP  134 (311)
T ss_pred             ecccceeEeeecCCCcceEEEEecCc---eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecC
Confidence            456788999999864 5788888888   99999976655443556 89999999999986544 55566 999999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC-CCCEEEEEeCCC
Q 005235          568 LKQRLIKKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPLFASCSDDC  645 (707)
Q Consensus       568 ~~~~~~~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg~llaSgs~Dg  645 (707)
                      ..+..+.++.+|...|...+|||. ++.++++|.|+.+++||++..++.+. +..|...|.++.|+. +..+|++|+.|+
T Consensus       135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~  213 (311)
T KOG0277|consen  135 NRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDN  213 (311)
T ss_pred             CCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCc
Confidence            999999999999999999999995 57889999999999999998866655 889999999999998 456999999999


Q ss_pred             cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVIRLYCH  707 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~IrlWdl  707 (707)
                      .|++||++...        +|+.+|.||.-.    |..+.|||... .|+|++.|-++||||.
T Consensus       214 ~vr~wDir~~r--------~pl~eL~gh~~A----VRkvk~Sph~~~lLaSasYDmT~riw~~  264 (311)
T KOG0277|consen  214 LVRGWDIRNLR--------TPLFELNGHGLA----VRKVKFSPHHASLLASASYDMTVRIWDP  264 (311)
T ss_pred             eEEEEehhhcc--------ccceeecCCceE----EEEEecCcchhhHhhhccccceEEeccc
Confidence            99999766322        478999999887    99999999754 7899999999999984

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=1e-22  Score=201.70  Aligned_cols=265  Identities=18%  Similarity=0.242  Sum_probs=199.3

Q ss_pred             cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235          416 IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK  495 (707)
Q Consensus       416 ~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~  495 (707)
                      +.+++.+.+|+||| ..+++++.|..|+|+|++.--...  ....+       ..+..+..       ......+..|..
T Consensus       111 HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks--~~~em-------~~~~~qa~-------hPvIRTlYDH~d  173 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKS--KPKEM-------ISGDTQAR-------HPVIRTLYDHVD  173 (430)
T ss_pred             cccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhc--chhhh-------ccCCcccC-------CceEeehhhccC
Confidence            36788999999999 367777889999999986321000  00000       00000000       011123668999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEEEEeC-CeEEEEECCCCe
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFFVSTK-KNIRVYDLLKQR  571 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~v~sd-g~I~iwDl~~~~  571 (707)
                      .|+++.|||....|++++.|+   +|+++|+++.... ..|   ....+|.++.|||.|.+|++|+| .++++||+.+-+
T Consensus       174 evn~l~FHPre~ILiS~srD~---tvKlFDfsK~saK-rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q  249 (430)
T KOG0640|consen  174 EVNDLDFHPRETILISGSRDN---TVKLFDFSKTSAK-RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ  249 (430)
T ss_pred             cccceeecchhheEEeccCCC---eEEEEecccHHHH-HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence            999999999999999999998   9999999886554 433   56678999999999999999995 899999999987


Q ss_pred             EEEEEe---CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-cCC-CCEEEEEEcCCCCEEEEEeCCCc
Q 005235          572 LIKKLE---TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-CHP-KDITNVAFHRSYPLFASCSDDCT  646 (707)
Q Consensus       572 ~~~~l~---~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-~h~-~~I~~vafspdg~llaSgs~Dg~  646 (707)
                      +...-.   .|...|+++.+++.|++.++||.||.|++||--++ +++.++. +|. ..|.+..|..+++++.+.+.|..
T Consensus       250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~  328 (430)
T KOG0640|consen  250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST  328 (430)
T ss_pred             EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence            765433   46788999999999999999999999999998765 7777764 564 57999999999999999999999


Q ss_pred             EEEEecccccCCC--------------CCCcc------c--------ce------------EEeeCCCCCCCCCeeEEEE
Q 005235          647 AYVFHGMVYSDLN--------------QNPLI------V--------PL------------EILRGHTSSNGRGVMDCKF  686 (707)
Q Consensus       647 I~Vwd~~~~~Dl~--------------~~~~~------~--------pl------------~~l~gh~~~~~~gV~~l~f  686 (707)
                      |++|.+.+..-+.              +....      +        .+            ..--||.+.    |..+.-
T Consensus       329 vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a----~R~i~H  404 (430)
T KOG0640|consen  329 VKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA----VRWIVH  404 (430)
T ss_pred             eeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC----ceEEEe
Confidence            9999654211100              00000      0        00            011367776    899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEe
Q 005235          687 HPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       687 spdg~~L~s~g~Dg~IrlWd  706 (707)
                      ||.++-++|||.|..+|+|-
T Consensus       405 SP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  405 SPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             CCCCCceeeecccceeeeee
Confidence            99999999999999999993

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=5.8e-22  Score=197.17  Aligned_cols=259  Identities=18%  Similarity=0.194  Sum_probs=207.1

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      |....+.|+.++.||++++|++........+.+..++.+++|.++.  .+++++.||.|+.+|+.++...          
T Consensus        21 f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~~~----------   88 (323)
T KOG1036|consen   21 FSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGNED----------   88 (323)
T ss_pred             EcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCc--eEEEeccCceEEEEEecCCcce----------
Confidence            3344456677789999999999998888888999999999999976  7999999999999998876332          


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeE
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPV  543 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~  543 (707)
                                               .+..|...|.||.+++--..+++|+.|+   +|++||.+..... ..+.....|.
T Consensus        89 -------------------------~igth~~~i~ci~~~~~~~~vIsgsWD~---~ik~wD~R~~~~~-~~~d~~kkVy  139 (323)
T KOG1036|consen   89 -------------------------QIGTHDEGIRCIEYSYEVGCVISGSWDK---TIKFWDPRNKVVV-GTFDQGKKVY  139 (323)
T ss_pred             -------------------------eeccCCCceEEEEeeccCCeEEEcccCc---cEEEEeccccccc-cccccCceEE
Confidence                                     3457999999999999889999999998   9999999875444 5555555788


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC---cceE
Q 005235          544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS---KPYR  617 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~---~~~~  617 (707)
                      ++...  +..|++|+ +..|.+|||++.....+..  .-.-.+.|+++-|++.-++++|-||+|.+=.++...   ....
T Consensus       140 ~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skky  217 (323)
T KOG1036|consen  140 CMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKY  217 (323)
T ss_pred             EEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhce
Confidence            77765  66788876 9999999999865433221  112348999999999999999999999887776541   2334


Q ss_pred             EeecCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235          618 VLKCHPK---------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       618 ~l~~h~~---------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp  688 (707)
                      .|+.|..         +|++++|||-...||||+.||.|.+|      |+.....   ++.|......    |.+++|+.
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W------d~~~rKr---l~q~~~~~~S----I~slsfs~  284 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIW------DLFNRKR---LKQLAKYETS----ISSLSFSM  284 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEc------cCcchhh---hhhccCCCCc----eEEEEecc
Confidence            6777753         69999999999999999999999999      5544444   5566666555    99999999


Q ss_pred             CCCEEEEEeC
Q 005235          689 RQPWLFTAGA  698 (707)
Q Consensus       689 dg~~L~s~g~  698 (707)
                      +|..||.|+.
T Consensus       285 dG~~LAia~s  294 (323)
T KOG1036|consen  285 DGSLLAIASS  294 (323)
T ss_pred             CCCeEEEEec
Confidence            9999998874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=2.8e-22  Score=216.79  Aligned_cols=307  Identities=19%  Similarity=0.262  Sum_probs=227.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCe---------------------EEEEEe-----------cCCcEEEEEEccCCCccEE
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGR---------------------CLRVLE-----------IGEAIQYVAWNPLPELPVL  434 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~---------------------~l~~l~-----------~~~~V~~v~~spdg~~~ll  434 (707)
                      +..++++||.|..||||.+.-+.                     ++..+.           +.+.|.++.|+|.+ ..|+
T Consensus       205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LL  283 (764)
T KOG1063|consen  205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLL  283 (764)
T ss_pred             CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhhe
Confidence            45689999999999999874221                     221222           17899999999999 5899


Q ss_pred             EEEeCCeEEEEECCCCCc---------hhcccccceeeeccc-----ccccCCCCcEEEEecCCcc----ceEEeccCCC
Q 005235          435 AVSVGQDVLILNTGLGNE---------EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKL----DGIRLRHFKM  496 (707)
Q Consensus       435 a~s~d~~V~lwd~~~~~~---------~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~----~~~~~~h~~~  496 (707)
                      +++.|.++.+|.+.....         .+.+....++...|.     +.+-+..|...+|......    .....+|.+.
T Consensus       284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~  363 (764)
T KOG1063|consen  284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG  363 (764)
T ss_pred             ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence            999999999999876522         111222233333333     5556678889999843321    2236799999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC--
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK--  569 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~--  569 (707)
                      |+.|+|+|.|.+|++++.|.   +-+++---..+.....+    .|.-.++|++|-+....|++|. ..-+|+|+...  
T Consensus       364 V~dv~W~psGeflLsvs~DQ---TTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f  440 (764)
T KOG1063|consen  364 VKDVDWDPSGEFLLSVSLDQ---TTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF  440 (764)
T ss_pred             ceeeeecCCCCEEEEecccc---ceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHH
Confidence            99999999999999999988   66666543221111233    6777899999988645555555 58889988610  


Q ss_pred             -----------------------------------------Ce---------------------------------EEEE
Q 005235          570 -----------------------------------------QR---------------------------------LIKK  575 (707)
Q Consensus       570 -----------------------------------------~~---------------------------------~~~~  575 (707)
                                                               |.                                 .+++
T Consensus       441 v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K  520 (764)
T KOG1063|consen  441 VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK  520 (764)
T ss_pred             HHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence                                                     00                                 1224


Q ss_pred             EeCCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          576 LETGLKEVSSIAIHPAGDNLIVGSREG-----KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       576 l~~~~~~I~sl~~spdg~~L~sGs~Dg-----~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      +.+|...|++++++|+|+++|+++...     .|++|+..+. ...+.+.+|+-.|+.++|||||++|++.|.|.++.+|
T Consensus       521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~  599 (764)
T KOG1063|consen  521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY  599 (764)
T ss_pred             hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence            557878899999999999999987643     4899999877 5566899999999999999999999999999999999


Q ss_pred             ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ....  ++....   ....++.|+.-    |.++.|+|++.++||+|.|.+|++|.+
T Consensus       600 ~~~~--~~~~e~---~fa~~k~HtRI----IWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  600 EVQE--DIKDEF---RFACLKAHTRI----IWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             eeec--ccchhh---hhccccccceE----EEEcccCcccceeEEecCCceEEEEec
Confidence            6542  111111   13447788876    999999999999999999999999963

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3e-22  Score=207.93  Aligned_cols=278  Identities=17%  Similarity=0.228  Sum_probs=218.0

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCC--CCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVE--SGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~--tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      |.....++++|+.||+++||.+.  +...++.+.. ..+|.+.+|.|+|...+++++....++.||+.+....-      
T Consensus       221 FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k------  294 (514)
T KOG2055|consen  221 FHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK------  294 (514)
T ss_pred             ecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc------
Confidence            44445689999999999999886  3445666666 78999999999996578888888899999987653210      


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEecc-CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccC
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH-FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLH  539 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h-~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~  539 (707)
                                                .....++ ...+.....++++++|+..+..|   .|.+....++... ..|+..
T Consensus       295 --------------------------~~~~~g~e~~~~e~FeVShd~~fia~~G~~G---~I~lLhakT~eli-~s~Kie  344 (514)
T KOG2055|consen  295 --------------------------LKPPYGVEEKSMERFEVSHDSNFIAIAGNNG---HIHLLHAKTKELI-TSFKIE  344 (514)
T ss_pred             --------------------------ccCCCCcccchhheeEecCCCCeEEEcccCc---eEEeehhhhhhhh-heeeec
Confidence                                      0011122 34566778899999999999988   9999998888887 788999


Q ss_pred             CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEECCC-----C
Q 005235          540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-KEVSSIAIHPAGDNLIVGSREGKLCWFDMDL-----S  612 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~-----~  612 (707)
                      +.|..++|+.+++.|++++ +|.|.+||++...++.++.... -.-++++.+++|.+||+||..|.|.|||..+     .
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN  424 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC
Confidence            9999999999998887766 8999999999999998887431 2246788899999999999999999999653     2


Q ss_pred             CcceEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235          613 SKPYRVLKCHPKDITNVAFHRSYPLFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ  690 (707)
Q Consensus       613 ~~~~~~l~~h~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg  690 (707)
                      .+|++++..-...|++++|+++.++||.||  ....+++-|+....-....|.   ...--+|       |+|++|||.+
T Consensus       425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~---~n~~vg~-------vtc~aFSP~s  494 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT---SNTKVGH-------VTCMAFSPNS  494 (514)
T ss_pred             CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC---CCCcccc-------eEEEEecCCC
Confidence            377887777778999999999999999888  456899988753221111111   1111122       9999999999


Q ss_pred             CEEEEEeCCCcEEEEeC
Q 005235          691 PWLFTAGADSVIRLYCH  707 (707)
Q Consensus       691 ~~L~s~g~Dg~IrlWdl  707 (707)
                      -+||.|..+|.|.||.|
T Consensus       495 G~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  495 GYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ceEEeecCCCceeeEee
Confidence            99999999999999975

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5e-22  Score=207.91  Aligned_cols=267  Identities=13%  Similarity=0.137  Sum_probs=214.6

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCccc-e
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLD-G  488 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~-~  488 (707)
                      .+.|.+++|+|... +=++++++-.|.||+..+...  .+....+.+.++.|.     ++.|+..|.|++++..+... .
T Consensus        26 ~~~vssl~fsp~~P-~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR  104 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHP-YDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR  104 (487)
T ss_pred             cCcceeEecCCCCC-CceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence            68899999999874 566677777899999776543  344455667777775     78899999999999555322 2


Q ss_pred             EEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEE
Q 005235          489 IRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRV  564 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~i  564 (707)
                      .+..|+.+|..+.|+|.++ .|++|+.|+   .+++||+++...+ ..+ +|+..|.|.+|+|... .+++|+ ||.|++
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~---v~k~~d~s~a~v~-~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl  180 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDK---VVKYWDLSTAYVQ-AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL  180 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCc---eEEEEEcCCcEEE-EEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence            3678999999999999665 566666666   9999999999876 777 9999999999999766 556666 999999


Q ss_pred             EECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC
Q 005235          565 YDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       565 wDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~  643 (707)
                      ||++.. ..+..+. |..+|.++.+-|.|..+|+++. ..|+|||+-++.+.+..+..|...|+|+++..++..|+|||-
T Consensus       181 ~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL  258 (487)
T KOG0310|consen  181 WDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL  258 (487)
T ss_pred             EEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence            999976 5666664 6689999999999999999875 479999999887777777679999999999999999999999


Q ss_pred             CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235          644 DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                      |+.|+||+...+.      .   +..+.-. +    +|.+++.+|++..++.|..+|.+.+
T Consensus       259 D~~VKVfd~t~~K------v---v~s~~~~-~----pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  259 DRHVKVFDTTNYK------V---VHSWKYP-G----PVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             ccceEEEEccceE------E---EEeeecc-c----ceeeEEecCCCceEEEecccceeee
Confidence            9999999644221      1   3333322 2    3999999999999999999998754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-21  Score=215.99  Aligned_cols=302  Identities=18%  Similarity=0.215  Sum_probs=240.0

Q ss_pred             cCCCC-cEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc------hh
Q 005235          384 YPVAC-YLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE------EE  454 (707)
Q Consensus       384 fp~~~-~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~------~~  454 (707)
                      |-+++ .++++|+..|.+-+||++..+.+..+..  .+.|....|.|.. ..+++++.|+.+++|-..+++.      .-
T Consensus       252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R  330 (910)
T KOG1539|consen  252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSR  330 (910)
T ss_pred             eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeec
Confidence            44444 4677888889999999998888877764  6899999999988 4788888999888887664322      11


Q ss_pred             cccccceeeeccc-------------------------------------------------------------------
Q 005235          455 QRRVKDLLHVETP-------------------------------------------------------------------  467 (707)
Q Consensus       455 ~~~~~~v~~~~~~-------------------------------------------------------------------  467 (707)
                      .+|..+..++.|-                                                                   
T Consensus       331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~  410 (910)
T KOG1539|consen  331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE  410 (910)
T ss_pred             cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence            1122221111110                                                                   


Q ss_pred             ----ccccCCCCcEEEEecCCccceE-EeccC------CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee
Q 005235          468 ----TAPDDNMASIVSWLQHDKLDGI-RLRHF------KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF  536 (707)
Q Consensus       468 ----~~~~~~d~~i~iW~~~~~~~~~-~~~h~------~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~  536 (707)
                          ++..-.+...+.|+......+. ...+.      ..+++|+.++.|++.+.|+..|   .|-++++..+... ..|
T Consensus       411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G---~Id~fNmQSGi~r-~sf  486 (910)
T KOG1539|consen  411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG---TIDRFNMQSGIHR-KSF  486 (910)
T ss_pred             hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC---eEEEEEcccCeee-ccc
Confidence                1222234567788887666643 33444      7889999999999999999888   9999999999887 777


Q ss_pred             ----ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235          537 ----KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       537 ----~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~  611 (707)
                          .|.++|++++....++.+++++ +|.+.+||..+..++.++..+ ..+.++..|.....++++..|-.|.++|+.+
T Consensus       487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t  565 (910)
T KOG1539|consen  487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDLLAIALDDFSIRVVDVVT  565 (910)
T ss_pred             ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence                7899999999999998888887 999999999999888888766 5688999999999999999999999999998


Q ss_pred             CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235          612 SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP  691 (707)
Q Consensus       612 ~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~  691 (707)
                      . +.++.|.+|+..|++++|||+|++|++++.|++|++|      |+.+..++   ..+.-.. +    +.++.|+|+|.
T Consensus       566 ~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w------Dlpt~~lI---D~~~vd~-~----~~sls~SPngD  630 (910)
T KOG1539|consen  566 R-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW------DLPTGTLI---DGLLVDS-P----CTSLSFSPNGD  630 (910)
T ss_pred             h-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE------eccCccee---eeEecCC-c----ceeeEECCCCC
Confidence            7 7889999999999999999999999999999999999      66666553   3333222 2    88999999999


Q ss_pred             EEEEEeCC-CcEEEEe
Q 005235          692 WLFTAGAD-SVIRLYC  706 (707)
Q Consensus       692 ~L~s~g~D-g~IrlWd  706 (707)
                      +|||+..| .-|.+|.
T Consensus       631 ~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  631 FLATVHVDQNGIYLWS  646 (910)
T ss_pred             EEEEEEecCceEEEEE
Confidence            99999988 5699994

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=4.8e-22  Score=215.16  Aligned_cols=255  Identities=15%  Similarity=0.216  Sum_probs=208.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEE--Eec-CCcEEE-EEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRV--LEI-GEAIQY-VAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~--l~~-~~~V~~-v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      ..++++|.||++++|+-..++.+.+  +.. .+.|.+ +++-+.....+++++.|.+|.+|.+....+.           
T Consensus        26 ~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~-----------   94 (745)
T KOG0301|consen   26 VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL-----------   94 (745)
T ss_pred             eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch-----------
Confidence            3689999999999999766665543  332 455555 7776532236999999999999987765442           


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV  543 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~  543 (707)
                                             ..+.+|.+.|+|++...++. +++||.|.   +++||-...-.   ..+ +|...|.
T Consensus        95 -----------------------~~LkgH~snVC~ls~~~~~~-~iSgSWD~---TakvW~~~~l~---~~l~gH~asVW  144 (745)
T KOG0301|consen   95 -----------------------YTLKGHKSNVCSLSIGEDGT-LISGSWDS---TAKVWRIGELV---YSLQGHTASVW  144 (745)
T ss_pred             -----------------------hhhhccccceeeeecCCcCc-eEeccccc---ceEEecchhhh---cccCCcchhee
Confidence                                   24679999999999888877 99999998   99999875433   446 9999999


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235          544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                      ++++-|.+ .+++|+ |.+|++|.-  ++++++|.+|...|..+++-+++ .|++++.||.|++|++. + ..+..+.+|
T Consensus       145 Av~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~-g-e~l~~~~gh  218 (745)
T KOG0301|consen  145 AVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD-G-EVLLEMHGH  218 (745)
T ss_pred             eeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc-C-ceeeeeecc
Confidence            99999998 555555 999999975  78899999999999999998764 78899999999999994 4 678889999


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235          623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI  702 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I  702 (707)
                      +.-|.+++...++..++|++.|++++||+..           .+++.+.-.+..    |+++.+-++|. |++|++||.|
T Consensus       219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----------e~~q~I~lPtts----iWsa~~L~NgD-Ivvg~SDG~V  282 (745)
T KOG0301|consen  219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----------ECVQVITLPTTS----IWSAKVLLNGD-IVVGGSDGRV  282 (745)
T ss_pred             ceEEEEEEecCCCCeEEEecCCceEEEeecC-----------ceEEEEecCccc----eEEEEEeeCCC-EEEeccCceE
Confidence            9999999988888999999999999999542           345666655555    99999988887 7788899999


Q ss_pred             EEEe
Q 005235          703 RLYC  706 (707)
Q Consensus       703 rlWd  706 (707)
                      |||.
T Consensus       283 rVfT  286 (745)
T KOG0301|consen  283 RVFT  286 (745)
T ss_pred             EEEE
Confidence            9996

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=6.9e-22  Score=205.41  Aligned_cols=262  Identities=15%  Similarity=0.119  Sum_probs=207.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEE-EE------------------ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCC
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLR-VL------------------EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL  449 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~-~l------------------~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~  449 (707)
                      .+.|+++.+|+|.-|++.+|+..+ .+                  .+...|.+++.++|| .+|++++.|..|.||++.+
T Consensus       155 ~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t  233 (479)
T KOG0299|consen  155 KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT  233 (479)
T ss_pred             cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-cEEEecCCCceEEEecCcc
Confidence            489999999999999999987441 11                  113568999999999 5888889999999999887


Q ss_pred             CCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235          450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK  529 (707)
Q Consensus       450 ~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~  529 (707)
                      ....                                  ..+.+|.+.|.+++|-.....|++++.|.   +|++|++...
T Consensus       234 ~ehv----------------------------------~~~~ghr~~V~~L~fr~gt~~lys~s~Dr---svkvw~~~~~  276 (479)
T KOG0299|consen  234 LEHV----------------------------------KVFKGHRGAVSSLAFRKGTSELYSASADR---SVKVWSIDQL  276 (479)
T ss_pred             cchh----------------------------------hcccccccceeeeeeecCccceeeeecCC---ceEEEehhHh
Confidence            6432                                  12568999999999998888999999988   9999999988


Q ss_pred             ceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 005235          530 LSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWF  607 (707)
Q Consensus       530 ~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vw  607 (707)
                      ... .++ +|...|.++.-..-.+.+.+|. |+++++|++... ....+.++.+.+-|++|- +..++++||.+|.|.+|
T Consensus       277 s~v-etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLW  353 (479)
T KOG0299|consen  277 SYV-ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALW  353 (479)
T ss_pred             HHH-HHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEe
Confidence            777 566 9999999999888888888886 999999999543 334577888899999996 45799999999999999


Q ss_pred             ECCCCCcceEEee-cC-----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235          608 DMDLSSKPYRVLK-CH-----------PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS  675 (707)
Q Consensus       608 Dl~~~~~~~~~l~-~h-----------~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~  675 (707)
                      ++... +|+.+.+ +|           ..+|++|+..|...++|+||.+|.|++|-+...     ...+.++..+.- .+
T Consensus       354 s~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g-----~r~i~~l~~ls~-~G  426 (479)
T KOG0299|consen  354 SLLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG-----LRAINLLYSLSL-VG  426 (479)
T ss_pred             eeccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC-----ccccceeeeccc-cc
Confidence            99866 6665443 23           237999999999999999999999999954321     123344555552 23


Q ss_pred             CCCCCeeEEEEcCCCCEEEEE-eCCCcE
Q 005235          676 SNGRGVMDCKFHPRQPWLFTA-GADSVI  702 (707)
Q Consensus       676 ~~~~gV~~l~fspdg~~L~s~-g~Dg~I  702 (707)
                      .    |++++|+++|.+|++| |....+
T Consensus       427 f----VNsl~f~~sgk~ivagiGkEhRl  450 (479)
T KOG0299|consen  427 F----VNSLAFSNSGKRIVAGIGKEHRL  450 (479)
T ss_pred             E----EEEEEEccCCCEEEEeccccccc
Confidence            3    9999999999977665 444433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=2e-20  Score=195.94  Aligned_cols=304  Identities=15%  Similarity=0.193  Sum_probs=235.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc---hhcccccceeeec
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE---EEQRRVKDLLHVE  465 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~---~~~~~~~~v~~~~  465 (707)
                      -++||..+|+|.||+..+.+..+.... .+.|.+++...+|  .|++++.|..|..||-.-...   .+......+..+.
T Consensus       259 dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~  336 (626)
T KOG2106|consen  259 DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA  336 (626)
T ss_pred             CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence            478999999999999988776665544 8999999999999  799999999999999322111   1111112222222


Q ss_pred             cc---ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCe
Q 005235          466 TP---TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLP  542 (707)
Q Consensus       466 ~~---~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V  542 (707)
                      -.   +..|...+.|..=++.+.......+|......++.+|+.+.|+|++.|+   .+++|+  ..+.. .......++
T Consensus       337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk---~v~lW~--~~k~~-wt~~~~d~~  410 (626)
T KOG2106|consen  337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK---HVRLWN--DHKLE-WTKIIEDPA  410 (626)
T ss_pred             cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc---eEEEcc--CCcee-EEEEecCce
Confidence            11   5566666777777777777777889999999999999999999999998   999999  33332 333567789


Q ss_pred             EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-
Q 005235          543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-  620 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-  620 (707)
                      .|+.|||.| .+++|+ .|...+.|..++.++..-.. ..++++++|+|+|.+||+||.|+.|+||-++.+...+.... 
T Consensus       411 ~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k  488 (626)
T KOG2106|consen  411 ECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK  488 (626)
T ss_pred             eEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence            999999999 888888 89999999999777655554 68899999999999999999999999999988766666554 


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC------------------------------------------
Q 005235          621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL------------------------------------------  658 (707)
Q Consensus       621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl------------------------------------------  658 (707)
                      .|..+|+.+.||+|+++|.+-|-|-.|..|....-.+.                                          
T Consensus       489 ~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~  568 (626)
T KOG2106|consen  489 CSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLAS  568 (626)
T ss_pred             ecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhc
Confidence            34478999999999999999999988988832200000                                          


Q ss_pred             ---------CCCCcc---cceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          659 ---------NQNPLI---VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       659 ---------~~~~~~---~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                               .+.|+.   .+...+.+|+..    |.+++|......|.+.+.|..|..|+|
T Consensus       569 gdd~g~v~lf~yPc~s~rA~~he~~ghs~~----vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  569 GDDFGKVHLFSYPCSSPRAPSHEYGGHSSH----VTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             cccCceEEEEccccCCCcccceeeccccce----eEEEEEeeCCceEEecCCCceEEEEEe
Confidence                     011111   133455678777    999999998889988889999999986

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=7.7e-23  Score=202.55  Aligned_cols=228  Identities=16%  Similarity=0.232  Sum_probs=185.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCe---EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          389 YLEYKGSTDGTVRIWEVESGR---CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~---~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      .+|++|+.|++|+++|.....   ..+.|+...+|.++.|+|.|+ .|+++..-..+++||+.+....+...        
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qcfvsan--------  255 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSAN--------  255 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecC--------
Confidence            599999999999999987543   334455578999999999995 66666677799999987753211100        


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--cc-CCCe
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KL-HGLP  542 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~-~~~V  542 (707)
                                             .-.+|.+.|++|.+++.|+..++++.||   .|+|||--.+++. .+|  .| ...|
T Consensus       256 -----------------------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG---~IklwDGVS~rCv-~t~~~AH~gsev  308 (430)
T KOG0640|consen  256 -----------------------PDDQHTGAITQVRYSSTGSLYVTASKDG---AIKLWDGVSNRCV-RTIGNAHGGSEV  308 (430)
T ss_pred             -----------------------cccccccceeEEEecCCccEEEEeccCC---cEEeeccccHHHH-HHHHhhcCCcee
Confidence                                   1237999999999999999999999999   9999999999998 888  44 4578


Q ss_pred             EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-----CCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCcc
Q 005235          543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-----KEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSSKP  615 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-----~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~~~  615 (707)
                      .++.|..+++++++++ |..|++|.+.++++++.+.+..     ..-+...|+...++++.-.. .+.++-||.++..+.
T Consensus       309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~  388 (430)
T KOG0640|consen  309 CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV  388 (430)
T ss_pred             eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence            8999999999999988 9999999999999999987642     11244557777778776543 467999999988655


Q ss_pred             eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          616 YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       616 ~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      -..--+|+++++.+.-||.++-|++||+|-.+++|.-
T Consensus       389 ~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  389 ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            5555689999999999999999999999999999953

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.5e-22  Score=217.44  Aligned_cols=305  Identities=12%  Similarity=0.171  Sum_probs=235.2

Q ss_pred             ccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC--eEEEEEec
Q 005235          339 YENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG--RCLRVLEI  416 (707)
Q Consensus       339 ~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg--~~l~~l~~  416 (707)
                      |...++.|...+.|+.+|-.+                             ..++++|.|-+|++|++..+  -|+.++..
T Consensus        65 ~~asme~HsDWVNDiiL~~~~-----------------------------~tlIS~SsDtTVK~W~~~~~~~~c~stir~  115 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNG-----------------------------KTLISASSDTTVKVWNAHKDNTFCMSTIRT  115 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCC-----------------------------CceEEecCCceEEEeecccCcchhHhhhhc
Confidence            455556666677898888543                             47999999999999999887  57766665


Q ss_pred             -CCcEEEEEE-ccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE-ecc
Q 005235          417 -GEAIQYVAW-NPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR-LRH  493 (707)
Q Consensus       417 -~~~V~~v~~-spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~-~~h  493 (707)
                       .+.|.|+++ .++. ..++++|.|+.|.|||+.++...+......+..                        ..+ .++
T Consensus       116 H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~------------------------~sl~sG~  170 (735)
T KOG0308|consen  116 HKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTV------------------------NSLGSGP  170 (735)
T ss_pred             ccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhcccccc------------------------ccCCCCC
Confidence             899999999 6665 367778899999999999874422211111110                        112 278


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR  571 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~  571 (707)
                      ...|++++-++.|..|++|+..+   .+++||..+.... ..+ +|...|.++..+++|..+++++ ||+|++|||..++
T Consensus       171 k~siYSLA~N~t~t~ivsGgtek---~lr~wDprt~~ki-mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr  246 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGTIIVSGGTEK---DLRLWDPRTCKKI-MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR  246 (735)
T ss_pred             ccceeeeecCCcceEEEecCccc---ceEEeccccccce-eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence            89999999999999999999877   9999999999887 777 9999999999999999999988 9999999999999


Q ss_pred             EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      ++.++..|...|.++..+|+-.++.+|+.||.|..=|+++..+....++ ...+|..+..+...+-+-+++.|+.|+-|-
T Consensus       247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec-CCCchhhhhhccccCCceeeeccccceecC
Confidence            9999999999999999999999999999999999999987644444443 456777888776555557788899999996


Q ss_pred             cccccCCCCC------------Ccc----cceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          652 GMVYSDLNQN------------PLI----VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       652 ~~~~~Dl~~~------------~~~----~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ......+.-+            +..    .|-.++.|     +.+|...+.-.+.+.++|-.+.|.+.+||+
T Consensus       326 ~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G-----g~ai~k~~mL~dkRhVlTkDa~gnv~lwDI  392 (735)
T KOG0308|consen  326 LEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG-----GAAIKKHAMLNDKRHVLTKDAKGNVALWDI  392 (735)
T ss_pred             CccccccccCCCCCcccccCCCccccccCCCceeccC-----chhhhhhhhhcCcceEeeecCCCCEEEEEe
Confidence            5432211110            000    01112222     223666677778899999999999999996

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=6.4e-21  Score=190.67  Aligned_cols=246  Identities=13%  Similarity=0.164  Sum_probs=197.1

Q ss_pred             EEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe
Q 005235          413 VLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL  491 (707)
Q Consensus       413 ~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~  491 (707)
                      .+.. .+.|++|.|+++|+ .+++++.|..++|||...+...                                  ..+.
T Consensus         9 ~f~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~----------------------------------~ti~   53 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQV----------------------------------KTIN   53 (311)
T ss_pred             ccccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCcee----------------------------------eEee
Confidence            3444 78899999999994 7778888889999997765321                                  1233


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK  569 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~  569 (707)
                      .+...|..++|......++.++. ..+.+|+.-++.+.+.. +-| +|...|.+++.+|-+..+++++ |++|++||++.
T Consensus        54 skkyG~~~~~Fth~~~~~i~sSt-k~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~  131 (311)
T KOG1446|consen   54 SKKYGVDLACFTHHSNTVIHSST-KEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV  131 (311)
T ss_pred             cccccccEEEEecCCceEEEccC-CCCCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC
Confidence            45556777888766666666665 22459999999999998 889 9999999999999999999988 99999999998


Q ss_pred             CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-CcceEEeecC---CCCEEEEEEcCCCCEEEEEeCCC
Q 005235          570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS-SKPYRVLKCH---PKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~-~~~~~~l~~h---~~~I~~vafspdg~llaSgs~Dg  645 (707)
                      .++...+.....  ..++|+|.|-++|+|.....|++||++.- ..|..++...   ....+.+.|||+|++|+.++..+
T Consensus       132 ~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s  209 (311)
T KOG1446|consen  132 KKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS  209 (311)
T ss_pred             CCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC
Confidence            777666654433  35789999999999998889999999874 4677777644   56789999999999999999999


Q ss_pred             cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .+++.|+      ..+..   +..+.++...... -.+.+|+||++++++|+.||+|.+|++
T Consensus       210 ~~~~lDA------f~G~~---~~tfs~~~~~~~~-~~~a~ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  210 FIYLLDA------FDGTV---KSTFSGYPNAGNL-PLSATFTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             cEEEEEc------cCCcE---eeeEeeccCCCCc-ceeEEECCCCcEEEEecCCCcEEEEEc
Confidence            9999954      34433   6677777665222 367899999999999999999999985

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=1.5e-21  Score=210.75  Aligned_cols=302  Identities=14%  Similarity=0.152  Sum_probs=230.0

Q ss_pred             CCcEEEEEeCCCcEEEEeCCC----CeEEEEEecCCcEEEEEEcc------------CCCccEEEEEeCCeEEEEECCCC
Q 005235          387 ACYLEYKGSTDGTVRIWEVES----GRCLRVLEIGEAIQYVAWNP------------LPELPVLAVSVGQDVLILNTGLG  450 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~t----g~~l~~l~~~~~V~~v~~sp------------dg~~~lla~s~d~~V~lwd~~~~  450 (707)
                      ....+..--.|..++|||+..    |++-..+.+...|+.|.--|            .+  .+++++.|++|++|++..+
T Consensus       335 t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSsD~TIRlW~l~~c  412 (1080)
T KOG1408|consen  335 TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG--CFTTCSSDGTIRLWDLAFC  412 (1080)
T ss_pred             CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc--ceeEecCCCcEEEeecccc
Confidence            344555668899999999975    56666666677777776544            34  6899999999999998763


Q ss_pred             Cchhc----------------cccc-----------------------ceeeeccc-----ccccCCCCcEEEEecCCcc
Q 005235          451 NEEEQ----------------RRVK-----------------------DLLHVETP-----TAPDDNMASIVSWLQHDKL  486 (707)
Q Consensus       451 ~~~~~----------------~~~~-----------------------~v~~~~~~-----~~~~~~d~~i~iW~~~~~~  486 (707)
                      .....                ..+.                       .+.+++.+     +++|...|+++++++..-.
T Consensus       413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~  492 (1080)
T KOG1408|consen  413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE  492 (1080)
T ss_pred             cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh
Confidence            11000                0000                       01111111     7889999999999998654


Q ss_pred             c-eEEeccCCCeEEEEEcC---CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCC--CEEEEEe-
Q 005235          487 D-GIRLRHFKMVSSVEWHR---RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTR--SIFFVST-  558 (707)
Q Consensus       487 ~-~~~~~h~~~V~~v~~sp---~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~--~~l~v~s-  558 (707)
                      . +....|...|.|+.|+.   ..++||+++.|.   .|.|+|+...-....++ +|...|++|.|.-+|  ..+++++ 
T Consensus       493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR---lIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA  569 (1080)
T KOG1408|consen  493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDR---LIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA  569 (1080)
T ss_pred             hhhheecccceeEEEeecCchhhhHhhhhccCCc---eEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence            4 44778999999999986   347899999977   99999998776654677 999999999998876  4556655 


Q ss_pred             CCeEEEEECCCCeEEEEEe-----CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee---cCCCCEEEEE
Q 005235          559 KKNIRVYDLLKQRLIKKLE-----TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK---CHPKDITNVA  630 (707)
Q Consensus       559 dg~I~iwDl~~~~~~~~l~-----~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~---~h~~~I~~va  630 (707)
                      |+.|.+--.++......+.     .....+..|++.|...++++++.|+.|+|||+..+ +..+.|+   +|.+....|.
T Consensus       570 DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~  648 (1080)
T KOG1408|consen  570 DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVI  648 (1080)
T ss_pred             chhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEEEE
Confidence            7665443322211111122     12356899999999999999999999999999987 7777776   4667888999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ..|.|.+||+.+.|.++.++      |..++.+   +....||...    |+.+.|.+|-+.|++++.||.|.||.|
T Consensus       649 lDPSgiY~atScsdktl~~~------Df~sgEc---vA~m~GHsE~----VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  649 LDPSGIYLATSCSDKTLCFV------DFVSGEC---VAQMTGHSEA----VTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             ECCCccEEEEeecCCceEEE------Eeccchh---hhhhcCcchh----eeeeeecccchhheeecCCceEEEEEC
Confidence            99999999999999999999      4555554   8889999998    999999999999999999999999975

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4e-21  Score=182.88  Aligned_cols=261  Identities=17%  Similarity=0.203  Sum_probs=198.2

Q ss_pred             eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccce
Q 005235          409 RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG  488 (707)
Q Consensus       409 ~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~  488 (707)
                      .++..+.....|.+|+|+|.|. ..++++...+++|.....-.....+|......            ...++       .
T Consensus        24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~p------------p~v~~-------k   83 (350)
T KOG0641|consen   24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQP------------PSVLC-------K   83 (350)
T ss_pred             EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCC------------CeEEe-------e
Confidence            4566666688999999999993 34444455677776543321111111111000            01111       1


Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee----eee-ccCCCeEEEEEeCC----CCEEEEEe-
Q 005235          489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR----IPF-KLHGLPVSSVFHPT----RSIFFVST-  558 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~----~~~-~~~~~V~~v~fspd----~~~l~v~s-  558 (707)
                      ....|.+.|.|++|+|+|..+++|+.|.   .|++.-++...++.    ..| -|.+.|..++|-.+    +.+|++++ 
T Consensus        84 r~khhkgsiyc~~ws~~geliatgsndk---~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   84 RNKHHKGSIYCTAWSPCGELIATGSNDK---TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA  160 (350)
T ss_pred             eccccCccEEEEEecCccCeEEecCCCc---eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence            2347899999999999999999999988   89888776554431    345 78899999999643    45677765 


Q ss_pred             -CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec--C-----CCCEEEEE
Q 005235          559 -KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC--H-----PKDITNVA  630 (707)
Q Consensus       559 -dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~--h-----~~~I~~va  630 (707)
                       |..|++-|...|+....+.+|.+.|.++ ++-+|-.+++||.|.+|++||++-. .++.++..  |     ..+|.+|+
T Consensus       161 gdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~  238 (350)
T KOG0641|consen  161 GDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVA  238 (350)
T ss_pred             CcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEE
Confidence             7888888999999999999999999887 3446889999999999999999876 55665531  2     36799999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ..|.|++|++|-.|.+..+|      |+..+..   ++.+..|+..    |.++.|+|.-.+|++++.|..|++=||
T Consensus       239 vdpsgrll~sg~~dssc~ly------dirg~r~---iq~f~phsad----ir~vrfsp~a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  239 VDPSGRLLASGHADSSCMLY------DIRGGRM---IQRFHPHSAD----IRCVRFSPGAHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             ECCCcceeeeccCCCceEEE------EeeCCce---eeeeCCCccc----eeEEEeCCCceEEEEecccceEEEeec
Confidence            99999999999999999999      4555543   8899999988    999999999999999999999999765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=4.3e-22  Score=207.16  Aligned_cols=243  Identities=16%  Similarity=0.228  Sum_probs=191.4

Q ss_pred             CCcccCCCCcEEEEEeCCCcEEEEeCCCCe--------EE--EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECC
Q 005235          380 DLKPYPVACYLEYKGSTDGTVRIWEVESGR--------CL--RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTG  448 (707)
Q Consensus       380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~--------~l--~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~  448 (707)
                      .++-.|.+..++++++..+.|.|||..+-.        |.  .++.+ ...-.+|+|++.....+++++.+++|++||+.
T Consensus       129 RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~  208 (422)
T KOG0264|consen  129 RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN  208 (422)
T ss_pred             hhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecc
Confidence            344567888899999999999999976421        11  13333 34467799999887789999999999999987


Q ss_pred             CCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECC
Q 005235          449 LGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLS  527 (707)
Q Consensus       449 ~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~  527 (707)
                      ......                    .       .......+.+|...|..++||+. ...|++++.|+   .+.|||++
T Consensus       209 ~~~~~~--------------------~-------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~---~L~iwD~R  258 (422)
T KOG0264|consen  209 AESKED--------------------K-------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG---KLMIWDTR  258 (422)
T ss_pred             ccccCC--------------------c-------cccceEEeecCCcceehhhccccchhhheeecCCC---eEEEEEcC
Confidence            653210                    0       00112246799999999999994 56788899888   99999999


Q ss_pred             C--Cceeeeee-ccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCC-CEEEEEEC
Q 005235          528 K--KLSHRIPF-KLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAG-DNLIVGSR  600 (707)
Q Consensus       528 ~--~~~~~~~~-~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~  600 (707)
                      +  .... ... +|.+.|.|++|+|-+ .+||+|+ |++|.+||+++ .+++.++.+|...|.+|.|+|.. ..||+++.
T Consensus       259 ~~~~~~~-~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~  337 (422)
T KOG0264|consen  259 SNTSKPS-HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT  337 (422)
T ss_pred             CCCCCCc-ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence            5  3333 445 899999999999965 4566677 99999999997 46788999999999999999986 57788999


Q ss_pred             CCcEEEEECCCCC-------------cceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235          601 EGKLCWFDMDLSS-------------KPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       601 Dg~I~vwDl~~~~-------------~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~  653 (707)
                      |+++.|||+..-+             .++.+..||+..|..+.|+|..+ .|+|+++|+.++||.+.
T Consensus       338 D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  338 DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            9999999997422             23466779999999999999988 67899999999999653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2.6e-21  Score=192.69  Aligned_cols=229  Identities=19%  Similarity=0.242  Sum_probs=191.4

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCC-ccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPE-LPVLAVSVGQDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~-~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      ..-++.++++||.|-+|+|||+.+...+..+-. .+.|+++.|.+.-. ..|++++.||.|.+|+.....          
T Consensus        49 vAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~----------  118 (362)
T KOG0294|consen   49 LAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE----------  118 (362)
T ss_pred             EEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE----------
Confidence            334567899999999999999998877766555 89999999998752 269999999999999965431          


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCC
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGL  541 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~  541 (707)
                                              ....+..|.+.|+.++.||.|+.-++++.|+   .+++|++-+++.. ..+.....
T Consensus       119 ------------------------~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~---~lr~WNLV~Gr~a-~v~~L~~~  170 (362)
T KOG0294|consen  119 ------------------------LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQ---VLRTWNLVRGRVA-FVLNLKNK  170 (362)
T ss_pred             ------------------------EeeeecccccccceeEecCCCceEEEEcCCc---eeeeehhhcCccc-eeeccCCc
Confidence                                    1224678999999999999999999999988   9999999998875 44455555


Q ss_pred             eEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235          542 PVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       542 V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                      ...|.|+|.|.+|+++..+.|-||.+.+..+...+... ..+.|+.|- ++..|++|..|+.|.+||.+.. .++..+.+
T Consensus       171 at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~A  247 (362)
T KOG0294|consen  171 ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLA  247 (362)
T ss_pred             ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeec
Confidence            56699999999999999999999999887776666544 557777775 5679999999999999999875 89999999


Q ss_pred             CCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecc
Q 005235          622 HPKDITNVAF--HRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       622 h~~~I~~vaf--spdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      |...|.++.+  .|.+.+|+|+|.||.|+|||+.
T Consensus       248 H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  248 HENRVKDIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             chhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence            9999999985  5678899999999999999774

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=8.4e-22  Score=206.22  Aligned_cols=256  Identities=12%  Similarity=0.085  Sum_probs=211.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC--Cchhcccccceeeecc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG--NEEEQRRVKDLLHVET  466 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~--~~~~~~~~~~v~~~~~  466 (707)
                      +.+++|.  .|.||+..+....+++.- ...|.+++|..|| ..++++...|.|+|+|..+.  -..+..|+.++-...|
T Consensus        42 ~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f  118 (487)
T KOG0310|consen   42 FAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKF  118 (487)
T ss_pred             eEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEe
Confidence            4444443  589999887766664443 8899999999999 34555557899999996552  2356677777777777


Q ss_pred             c------ccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeeecc
Q 005235          467 P------TAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPFKL  538 (707)
Q Consensus       467 ~------~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~  538 (707)
                      +      +++++.++.++.|++.+..... +.+|++.|.|.+|+|... .++||+.||   .|++||++........+.|
T Consensus       119 ~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg---~vrl~DtR~~~~~v~elnh  195 (487)
T KOG0310|consen  119 SPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG---KVRLWDTRSLTSRVVELNH  195 (487)
T ss_pred             cccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCc---eEEEEEeccCCceeEEecC
Confidence            6      7889999999999999888753 789999999999999654 889999999   9999999988433267799


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceE
Q 005235          539 HGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYR  617 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~  617 (707)
                      ..+|..+.|-|.|..|++|+...|+|||+.+| +++..+..|...|+|+++..++..|++|+-|+.|++||+.+. +.+.
T Consensus       196 g~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv~  274 (487)
T KOG0310|consen  196 GCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVVH  274 (487)
T ss_pred             CCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-EEEE
Confidence            99999999999999999999999999999965 555556669999999999999999999999999999997655 6666


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .+. ..++|.+++.+|++..++.|-.+|.+.+-+..
T Consensus       275 s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  275 SWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             eee-cccceeeEEecCCCceEEEecccceeeeehhh
Confidence            666 46899999999999999999999988877443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=3.2e-22  Score=208.72  Aligned_cols=264  Identities=13%  Similarity=0.171  Sum_probs=211.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCC---eEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          389 YLEYKGSTDGTVRIWEVESG---RCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg---~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      ..+|||+. |.|+|||+...   ..+..+..   ...|.++.+.||| +.|++++...+|.|||+......+...     
T Consensus       432 rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTprikae-----  504 (705)
T KOG0639|consen  432 RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPRIKAE-----  504 (705)
T ss_pred             ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-ceEEeccccceeeeeeccCCCcchhhh-----
Confidence            47889875 67999998642   23444443   7889999999999 589999999999999987654432110     


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL  541 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~  541 (707)
                                                 +..-.-.+.+++.+||.+..++++.||   .|.|||+...... +.| +|...
T Consensus       505 ---------------------------ltssapaCyALa~spDakvcFsccsdG---nI~vwDLhnq~~V-rqfqGhtDG  553 (705)
T KOG0639|consen  505 ---------------------------LTSSAPACYALAISPDAKVCFSCCSDG---NIAVWDLHNQTLV-RQFQGHTDG  553 (705)
T ss_pred             ---------------------------cCCcchhhhhhhcCCccceeeeeccCC---cEEEEEcccceee-ecccCCCCC
Confidence                                       111223467788999999999999999   9999999998888 899 99999


Q ss_pred             eEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235          542 PVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       542 V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~  620 (707)
                      +.|+.++++|..|.+|+ |++||.||++.++.+.... ....|.++..+|.+++|++|-.++.+-|......  ....+.
T Consensus       554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp--~kyqlh  630 (705)
T KOG0639|consen  554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--EKYQLH  630 (705)
T ss_pred             ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc--cceeec
Confidence            99999999999999999 9999999999987665543 2366999999999999999999999998887643  345677


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                      -|...|.++.|.+.|++|+|.+.|..+..|...      -+..   +...+..+     .|++|..|-+.++|+||+.|.
T Consensus       631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtP------yGas---iFqskE~S-----sVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP------YGAS---IFQSKESS-----SVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             ccccEEEEEEecccCceeeecCchhhhhhccCc------cccc---eeeccccC-----cceeeeeccCceEEEecCCCc
Confidence            799999999999999999999999999999432      2222   22222222     299999999999999999998


Q ss_pred             cEEEEeC
Q 005235          701 VIRLYCH  707 (707)
Q Consensus       701 ~IrlWdl  707 (707)
                      ...||.+
T Consensus       697 kATVYeV  703 (705)
T KOG0639|consen  697 KATVYEV  703 (705)
T ss_pred             ceEEEEE
Confidence            8888753

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=6.4e-22  Score=214.57  Aligned_cols=228  Identities=16%  Similarity=0.221  Sum_probs=196.7

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      +...+.+|+.|..+|.|.|||+.+.+.++.+..  ...|-+++|+..   .+.+++.++.|..+|+.......       
T Consensus       225 ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~---~lssGsr~~~I~~~dvR~~~~~~-------  294 (484)
T KOG0305|consen  225 WSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS---VLSSGSRDGKILNHDVRISQHVV-------  294 (484)
T ss_pred             ECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc---eEEEecCCCcEEEEEEecchhhh-------
Confidence            345567999999999999999999988888877  789999999944   48888899999999987653321       


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCC
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHG  540 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~  540 (707)
                                                ..+.+|...|+.+.|++++.+||+|+.|+   .+.|||....... ..| .|.+
T Consensus       295 --------------------------~~~~~H~qeVCgLkws~d~~~lASGgnDN---~~~Iwd~~~~~p~-~~~~~H~a  344 (484)
T KOG0305|consen  295 --------------------------STLQGHRQEVCGLKWSPDGNQLASGGNDN---VVFIWDGLSPEPK-FTFTEHTA  344 (484)
T ss_pred             --------------------------hhhhcccceeeeeEECCCCCeeccCCCcc---ceEeccCCCcccc-EEEeccce
Confidence                                      01457999999999999999999999988   9999999666665 677 9999


Q ss_pred             CeEEEEEeCC-CCEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE--ECCCcEEEEECCCCCc
Q 005235          541 LPVSSVFHPT-RSIFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG--SREGKLCWFDMDLSSK  614 (707)
Q Consensus       541 ~V~~v~fspd-~~~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG--s~Dg~I~vwDl~~~~~  614 (707)
                      .|.+++|+|- ..+||+|+   |++|++||..+++.+..+..+ ..|++|.|++..+-|+++  ..++.|.||++.+. +
T Consensus       345 AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~  422 (484)
T KOG0305|consen  345 AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-K  422 (484)
T ss_pred             eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-c
Confidence            9999999994 56777764   899999999999999988776 679999999999777664  45678999999876 7


Q ss_pred             ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          615 PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       615 ~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      ++..+.+|...|..++++|+|..+++|+.|.++++|++-
T Consensus       423 ~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  423 LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             eeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence            889999999999999999999999999999999999543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.89  E-value=8.4e-22  Score=220.91  Aligned_cols=231  Identities=17%  Similarity=0.175  Sum_probs=198.8

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ...+.+..|. ++  .+++++.+++|.+|+..++...                                 ...+.+|.+.
T Consensus       208 ~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i---------------------------------~~~l~GH~g~  251 (537)
T KOG0274|consen  208 DHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLI---------------------------------LTRLVGHFGG  251 (537)
T ss_pred             cchhhhheee-cC--eEEecCCCceeEEeecccceEE---------------------------------EeeccCCCCC
Confidence            5678888888 44  5888889999999987654221                                 0126699999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~  574 (707)
                      |.++++...++++++|+.|.   ++++||+.++.+. ..+ +|.+.|.++...+  ..+++|+ |.+|++|++.++.++.
T Consensus       252 V~~l~~~~~~~~lvsgS~D~---t~rvWd~~sg~C~-~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~  325 (537)
T KOG0274|consen  252 VWGLAFPSGGDKLVSGSTDK---TERVWDCSTGECT-HSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLN  325 (537)
T ss_pred             ceeEEEecCCCEEEEEecCC---cEEeEecCCCcEE-EEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEE
Confidence            99999988889999999988   9999999999999 888 8999999988764  3556666 9999999999999999


Q ss_pred             EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235          575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV  654 (707)
Q Consensus       575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~  654 (707)
                      .+.+|..+|.++.++  +.++++|++|++|.+||+.++ ++++++.+|...|.++.+.+. ..+++|+.|++|++||   
T Consensus       326 l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWd---  398 (537)
T KOG0274|consen  326 LLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWD---  398 (537)
T ss_pred             EeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeec---
Confidence            999999999999997  889999999999999999977 899999999999999988765 8999999999999995   


Q ss_pred             ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                         +.+..  .++.++.+|...    |..+.+  .+.+|+++++||+|++||.
T Consensus       399 ---l~~~~--~c~~tl~~h~~~----v~~l~~--~~~~Lvs~~aD~~Ik~WD~  440 (537)
T KOG0274|consen  399 ---LRTKR--KCIHTLQGHTSL----VSSLLL--RDNFLVSSSADGTIKLWDA  440 (537)
T ss_pred             ---CCchh--hhhhhhcCCccc----cccccc--ccceeEeccccccEEEeec
Confidence               44442  468899999987    766655  6789999999999999984

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=2.2e-21  Score=188.77  Aligned_cols=236  Identities=17%  Similarity=0.202  Sum_probs=199.1

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ...|.+|+|+-+| ..+++++.|+++.+|++.......                        -        ....+|.+.
T Consensus        20 ~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~------------------------~--------~~~~gh~~s   66 (313)
T KOG1407|consen   20 VQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRK------------------------E--------LVYRGHTDS   66 (313)
T ss_pred             hhcceEEEEcccC-ceeeecccCCceEEEEecchhhhh------------------------h--------hcccCCCcc
Confidence            5789999999999 589999999999999986642210                        0        124589999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235          497 VSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       497 V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~  574 (707)
                      |-+++|+| ..+.|++++.|.   .|++||++.+++. ..+..++.-.-+.|+|+|.++++++ |..|.+.|.++.+.+.
T Consensus        67 vdql~w~~~~~d~~atas~dk---~ir~wd~r~~k~~-~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~  142 (313)
T KOG1407|consen   67 VDQLCWDPKHPDLFATASGDK---TIRIWDIRSGKCT-ARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN  142 (313)
T ss_pred             hhhheeCCCCCcceEEecCCc---eEEEEEeccCcEE-EEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee
Confidence            99999988 457899999877   9999999999887 6675556666789999999999998 8999999999988776


Q ss_pred             EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235          575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV  654 (707)
Q Consensus       575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~  654 (707)
                      ..+-. ..+.-++|+.++++++..+..|.|.|.....- +|+..+++|.....||.|+|+|++||+|+.|..+-+||+. 
T Consensus       143 ~~~~~-~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~-  219 (313)
T KOG1407|consen  143 EEQFK-FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD-  219 (313)
T ss_pred             hhccc-ceeeeeeecCCCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChh-
Confidence            66533 56788999988888888888899999998755 8999999999999999999999999999999999999653 


Q ss_pred             ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235          655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                           .   +.|++.+.-+.-+    |..+.|+.+|++||+||.|..|-|
T Consensus       220 -----E---LiC~R~isRldwp----VRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  220 -----E---LICERCISRLDWP----VRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             -----H---hhhheeeccccCc----eEEEEeccCcceeeccCccceEEe
Confidence                 2   2457778877776    999999999999999999988744

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.7e-21  Score=200.43  Aligned_cols=273  Identities=13%  Similarity=0.148  Sum_probs=208.7

Q ss_pred             EEEEEeCCC-cEEEEeCCCCeEEEEEecCCcE--EEE-EEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeee
Q 005235          390 LEYKGSTDG-TVRIWEVESGRCLRVLEIGEAI--QYV-AWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       390 ~l~sgs~Dg-tVrIWd~~tg~~l~~l~~~~~V--~~v-~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      ++.+++.|. ++.+||+.||..+.++++....  .++ +..+ .  +++++.. -..|.+|.+.......          
T Consensus         9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~-~--yllsaq~~rp~l~vw~i~k~~~~~----------   75 (476)
T KOG0646|consen    9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNN-E--YLLSAQLKRPLLHVWEILKKDQVV----------   75 (476)
T ss_pred             EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhch-h--heeeecccCccccccccCchhhhh----------
Confidence            344455554 4999999999998888873211  111 1222 1  3444443 3356666654332110          


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV  543 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~  543 (707)
                                              ...-..++|.+++-+|.|.+|+.|+-.+   .|++|.++++... ..+ +|-..|+
T Consensus        76 ------------------------q~~v~Pg~v~al~s~n~G~~l~ag~i~g---~lYlWelssG~LL-~v~~aHYQ~IT  127 (476)
T KOG0646|consen   76 ------------------------QYIVLPGPVHALASSNLGYFLLAGTISG---NLYLWELSSGILL-NVLSAHYQSIT  127 (476)
T ss_pred             ------------------------hhcccccceeeeecCCCceEEEeecccC---cEEEEEeccccHH-HHHHhhcccee
Confidence                                    1223578899999999999999987777   9999999999988 777 9999999


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCC---------CeEEEEEeCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCC
Q 005235          544 SSVFHPTRSIFFVST-KKNIRVYDLLK---------QRLIKKLETGLKEVSSIAIHPAG--DNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-dg~I~iwDl~~---------~~~~~~l~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~vwDl~~  611 (707)
                      |+.|+-|+.+|++|+ ||.|.+|.+..         -+++..+..|.-.|+.+.+.+.|  .+|+++|.|.++++||+..
T Consensus       128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~  207 (476)
T KOG0646|consen  128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL  207 (476)
T ss_pred             EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence            999999999999999 99999998742         36788899999999999998765  6899999999999999998


Q ss_pred             CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccC----CC---CCCcccceEEeeCCCCCCCCCeeEE
Q 005235          612 SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSD----LN---QNPLIVPLEILRGHTSSNGRGVMDC  684 (707)
Q Consensus       612 ~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~D----l~---~~~~~~pl~~l~gh~~~~~~gV~~l  684 (707)
                      + .++.++. ....+.+|+..|.++.++.|+.+|.|.+.++....-    +.   .-.....+..+.||.+.  ..|+++
T Consensus       208 g-~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~--~~ITcL  283 (476)
T KOG0646|consen  208 G-VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE--SAITCL  283 (476)
T ss_pred             c-eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC--cceeEE
Confidence            7 6666655 467899999999999999999999999986542210    00   00122346778899871  239999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeC
Q 005235          685 KFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       685 ~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +.+-||..|++|+.||.|+|||+
T Consensus       284 ais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  284 AISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             EEecCccEEEeeCCCCCEEEEec
Confidence            99999999999999999999985

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.89  E-value=2.8e-21  Score=199.21  Aligned_cols=237  Identities=15%  Similarity=0.162  Sum_probs=197.2

Q ss_pred             CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235          418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV  497 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V  497 (707)
                      ..+.++..+|.. ..+++++.|..+.++|..++..                                  +..+.+|...|
T Consensus       220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~----------------------------------l~~~~Gh~kki  264 (506)
T KOG0289|consen  220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQI----------------------------------LATLKGHTKKI  264 (506)
T ss_pred             CCeeEEeecCCC-CcceecCCCCceEEEecchhhh----------------------------------hhhccCcceEE
Confidence            456777777763 3688888888888888655321                                  22467999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE
Q 005235          498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK  575 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~  575 (707)
                      +.+.||++...+++++.|.   .|+||......+. ... .|.++|+.+..||.|.+|++++ |++..+.|++++.++..
T Consensus       265 ~~v~~~~~~~~v~~aSad~---~i~vws~~~~s~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~  340 (506)
T KOG0289|consen  265 TSVKFHKDLDTVITASADE---IIRVWSVPLSSEP-TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV  340 (506)
T ss_pred             EEEEeccchhheeecCCcc---eEEeeccccccCc-cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE
Confidence            9999999999999999988   9999999888776 555 9999999999999999999999 89999999999988776


Q ss_pred             EeCC--CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          576 LETG--LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       576 l~~~--~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      ....  .-.+++.+|||||..|.+|+.||.|+|||+..+ .....|.+|+++|.+++|+-+|-+||++++|+.|++||++
T Consensus       341 vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR  419 (506)
T KOG0289|consen  341 VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR  419 (506)
T ss_pred             EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence            6542  234899999999999999999999999999987 4788899999999999999999999999999999999655


Q ss_pred             cccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          654 VYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       654 ~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                            ....   ++++.-...   .+|.++.|.+.|.+|+.+|.|=.|+++.
T Consensus       420 ------Kl~n---~kt~~l~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  420 ------KLKN---FKTIQLDEK---KEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ------hhcc---cceeecccc---ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence                  3222   333433322   2499999999999999998887776653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=8.2e-22  Score=204.85  Aligned_cols=260  Identities=15%  Similarity=0.129  Sum_probs=203.7

Q ss_pred             cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecC------CccceE
Q 005235          416 IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQH------DKLDGI  489 (707)
Q Consensus       416 ~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~------~~~~~~  489 (707)
                      +.-+|.||+++|++ .+.++++.+++|.-|++.++....                       .+|...      ......
T Consensus       141 H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~-----------------------~i~~~~ev~k~~~~~~k~  196 (479)
T KOG0299|consen  141 HQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDR-----------------------YIIERDEVLKSHGNPLKE  196 (479)
T ss_pred             ccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccc-----------------------cccccchhhhhccCCCCc
Confidence            36789999999998 489999999999999988874320                       111110      000111


Q ss_pred             E-eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE
Q 005235          490 R-LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYD  566 (707)
Q Consensus       490 ~-~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD  566 (707)
                      . ..|...+.+++.+++|+|||+|+.|.   .|.||+..+...+ ..| .|.+.|.+++|-.....|++++ |++|++|+
T Consensus       197 ~r~~h~keil~~avS~Dgkylatgg~d~---~v~Iw~~~t~ehv-~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~  272 (479)
T KOG0299|consen  197 SRKGHVKEILTLAVSSDGKYLATGGRDR---HVQIWDCDTLEHV-KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS  272 (479)
T ss_pred             ccccccceeEEEEEcCCCcEEEecCCCc---eEEEecCcccchh-hcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence            1 38999999999999999999999988   9999999999988 888 9999999999998877788877 99999999


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235          567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT  646 (707)
Q Consensus       567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~  646 (707)
                      +.....+.++.+|...|.+|....-++.+-+|+.|+++++|++...  ..-++.+|.+.+-|++|-.+ ..|++||++|+
T Consensus       273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~-~HfvsGSdnG~  349 (479)
T KOG0299|consen  273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS  349 (479)
T ss_pred             hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecc-cceeeccCCce
Confidence            9998999999999999999999888899999999999999999544  34467899999999999755 56889999999


Q ss_pred             EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |.+|.+.....+...+...++........ ....|++++..|...++++|+.+|.||||-+
T Consensus       350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~-~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  350 IALWSLLKKKPLFTSRLAHGVIPELDPVN-GNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             EEEeeecccCceeEeeccccccCCccccc-cccceeeeEecccCceEEecCCCCceEEEEe
Confidence            99996543222222111111111100000 0125999999999999999999999999963

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=4e-21  Score=190.40  Aligned_cols=243  Identities=15%  Similarity=0.127  Sum_probs=192.4

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|.+|+|||.....+++++.|++|++|++.......                                ......|.++
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~--------------------------------~ka~~~~~~P   74 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV--------------------------------PKAQQSHDGP   74 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCccc--------------------------------chhhhccCCC
Confidence            68899999999654455588899999999986531110                                0124478999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC--EEEEEe-CCeEEEEECCCCeE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS--IFFVST-KKNIRVYDLLKQRL  572 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~--~l~v~s-dg~I~iwDl~~~~~  572 (707)
                      |.+++|+.+|..+++++.|+   .+++|||.+++.  ..+ .|.++|.++.|-+...  .|++|+ |.+|+.||++...+
T Consensus        75 vL~v~WsddgskVf~g~~Dk---~~k~wDL~S~Q~--~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p  149 (347)
T KOG0647|consen   75 VLDVCWSDDGSKVFSGGCDK---QAKLWDLASGQV--SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP  149 (347)
T ss_pred             eEEEEEccCCceEEeeccCC---ceEEEEccCCCe--eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence            99999999999999999998   999999999966  466 9999999999988665  788999 99999999999999


Q ss_pred             EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          573 IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC-HPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       573 ~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      +.++.-. ..+.++++-  ...++++..++.|.+|+|+.+...++.... -.-.+++|+..++...+|.||-.|.+.|.+
T Consensus       150 v~t~~LP-eRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~  226 (347)
T KOG0647|consen  150 VATLQLP-ERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQY  226 (347)
T ss_pred             eeeeecc-ceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEe
Confidence            9988866 557777663  568899999999999999866444333321 234589999999999899999999999997


Q ss_pred             cccccCCCCCCcccceEEeeCCCCCC-----CCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          652 GMVYSDLNQNPLIVPLEILRGHTSSN-----GRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       652 ~~~~~Dl~~~~~~~pl~~l~gh~~~~-----~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      +...+. .      --.+|+-|...+     -..|++|+|||.-..|+|+|.||++.+||
T Consensus       227 id~~~~-~------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  227 IDDPNP-K------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             cCCCCc-c------CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence            753321 1      123555565321     23489999999999999999999999998

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.8e-20  Score=186.52  Aligned_cols=279  Identities=15%  Similarity=0.176  Sum_probs=197.1

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccc
Q 005235          386 VACYLEYKGSTDGTVRIWEVESG-----RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg-----~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      .++..|+|++.|++||||++...     +|++.---.+..+.|+|+||-...++++..++++++|.......        
T Consensus        96 SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d--------  167 (420)
T KOG2096|consen   96 SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD--------  167 (420)
T ss_pred             CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc--------
Confidence            34458999999999999998753     23322111457899999999865666666788999998543211        


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccC
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLH  539 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~  539 (707)
                                |+..-...-||-    ......|.-.|..+....++.+|++++.|.   .|.+|++. ++.. ..+ ...
T Consensus       168 ----------G~~~~~~v~~D~----~~f~~kh~v~~i~iGiA~~~k~imsas~dt---~i~lw~lk-Gq~L-~~idtnq  228 (420)
T KOG2096|consen  168 ----------GSGSHHFVHIDN----LEFERKHQVDIINIGIAGNAKYIMSASLDT---KICLWDLK-GQLL-QSIDTNQ  228 (420)
T ss_pred             ----------CCCCcccccccc----cccchhcccceEEEeecCCceEEEEecCCC---cEEEEecC-Ccee-eeecccc
Confidence                      000011112221    112335677777888888999999999988   99999998 5554 555 555


Q ss_pred             CCeEEEEEeCCCCEEEEEe-CCeEEEEECC---CC-----eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235          540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLL---KQ-----RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD  610 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~---~~-----~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~  610 (707)
                      ..-...+.+|+|+++++++ --.|++|.+-   .|     ..+..|.+|...|..++|+|+...+++.|.||+++|||.+
T Consensus       229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            5667789999999999988 7889999863   22     3456788999999999999999999999999999999986


Q ss_pred             CC----C--cceEEe----ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235          611 LS----S--KPYRVL----KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG  680 (707)
Q Consensus       611 ~~----~--~~~~~l----~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g  680 (707)
                      -.    .  +.+++.    ..-.+.-..++.+|.|..||.+. ..++++|......++.      ++.  ..|...    
T Consensus       309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~------~~e--~~h~~~----  375 (420)
T KOG2096|consen  309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYP------ELE--DIHSTT----  375 (420)
T ss_pred             ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccch------hHH--HhhcCc----
Confidence            32    1  112222    11223334799999999888664 4579999655433221      121  346665    


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          681 VMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       681 V~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      |.+++|+++|++++|+| |..+++.
T Consensus       376 Is~is~~~~g~~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  376 ISSISYSSDGKYIATCG-DRYVRVI  399 (420)
T ss_pred             eeeEEecCCCcEEeeec-ceeeeee
Confidence            99999999999999998 5666664

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=7.8e-21  Score=215.68  Aligned_cols=292  Identities=19%  Similarity=0.244  Sum_probs=217.9

Q ss_pred             CCCCCCCcc------ccCCCCCccCChhhh-----hhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEc
Q 005235          288 KPKLPGHEE------SYNPSLEYIPTQEEL-----NSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLC  356 (707)
Q Consensus       288 k~~lpgh~~------synP~ge~L~s~~~~-----~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~  356 (707)
                      |.++-+|.+      .-+|+|.-++|++..     ..|....      +++.....--.+|..-.++..|+.....+.|+
T Consensus         5 kp~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~------vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S   78 (942)
T KOG0973|consen    5 KPTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDP------VLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS   78 (942)
T ss_pred             cccccccCCeeEEEEEecCCceeEecCCccccccceeecccc------ccchhhhhhcccchhheeeccccCceeEEEEC
Confidence            456667766      478999999997753     3666322      11111111111333333344444444445555


Q ss_pred             CccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCC-------C-----------eEEEEEec-C
Q 005235          357 PRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVES-------G-----------RCLRVLEI-G  417 (707)
Q Consensus       357 pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t-------g-----------~~l~~l~~-~  417 (707)
                      |+                             +.+||+||+|+.|.||+-..       |           +++..+.+ .
T Consensus        79 ~d-----------------------------G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~  129 (942)
T KOG0973|consen   79 PD-----------------------------GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD  129 (942)
T ss_pred             CC-----------------------------CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC
Confidence            54                             56999999999999999772       1           24555555 8


Q ss_pred             CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235          418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV  497 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V  497 (707)
                      +.|..|+|+|++ ..+++++.|++|.||+..+...                                  ...+.+|.+.|
T Consensus       130 ~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~----------------------------------~~vl~~H~s~V  174 (942)
T KOG0973|consen  130 SDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFEL----------------------------------LKVLRGHQSLV  174 (942)
T ss_pred             CccceeccCCCc-cEEEEecccceEEEEcccccee----------------------------------eeeeecccccc
Confidence            899999999998 5788889999999999776521                                  22467999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee---eeee---ccCCCeEEEEEeCCCCEEEEEe--C---CeEEEEE
Q 005235          498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH---RIPF---KLHGLPVSSVFHPTRSIFFVST--K---KNIRVYD  566 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~---~~~~---~~~~~V~~v~fspd~~~l~v~s--d---g~I~iwD  566 (707)
                      ..++|.|-|+|||+-+.|.   +|+||+.......   ..+|   ........+.|+|||.+|++..  .   .++.|.+
T Consensus       175 KGvs~DP~Gky~ASqsdDr---tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie  251 (942)
T KOG0973|consen  175 KGVSWDPIGKYFASQSDDR---TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE  251 (942)
T ss_pred             cceEECCccCeeeeecCCc---eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence            9999999999999999988   9999997775444   1334   2344678899999999999864  2   5788888


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEEcCC-------------CC----EEEEEECCCcEEEEECCCCCcceEEe-ecCCCCEEE
Q 005235          567 LLKQRLIKKLETGLKEVSSIAIHPA-------------GD----NLIVGSREGKLCWFDMDLSSKPYRVL-KCHPKDITN  628 (707)
Q Consensus       567 l~~~~~~~~l~~~~~~I~sl~~spd-------------g~----~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~~I~~  628 (707)
                      -.+-+.-..|.+|.+++.+++|+|.             ++    .+|+||.|+.|.||..... +|+... .-....|..
T Consensus       252 R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~vi~~lf~~SI~D  330 (942)
T KOG0973|consen  252 RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFVIHNLFNKSIVD  330 (942)
T ss_pred             cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC-CchhhhhhhhcCceee
Confidence            8777888899999999999999982             12    6789999999999998765 555333 233578999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          629 VAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       629 vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      ++|+|||-.|..||.||+|.++++.
T Consensus       331 msWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  331 MSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             eeEcCCCCeEEEEecCCeEEEEEcc
Confidence            9999999999999999999999875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.3e-21  Score=185.82  Aligned_cols=245  Identities=19%  Similarity=0.187  Sum_probs=186.8

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|..+...--| .+|+++++|++|+|+.......                               ......+.+|.++
T Consensus        11 ~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~-------------------------------s~ll~~L~Gh~GP   58 (299)
T KOG1332|consen   11 EDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQ-------------------------------SKLLAELTGHSGP   58 (299)
T ss_pred             hhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCC-------------------------------ceeeeEecCCCCC
Confidence            3445555544445 4688888999999888765422                               0122347799999


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCC
Q 005235          497 VSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLK  569 (707)
Q Consensus       497 V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~  569 (707)
                      |..++|..  -|..||+++.||   .|.||.-..++-.. ..+ .|.+.|++++|.|.  |..|++++ ||.|.|.+...
T Consensus        59 Vwqv~wahPk~G~iLAScsYDg---kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~  135 (299)
T KOG1332|consen   59 VWKVAWAHPKFGTILASCSYDG---KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS  135 (299)
T ss_pred             eeEEeecccccCcEeeEeecCc---eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence            99999965  799999999999   99999998886541 233 88999999999885  56778877 99999998875


Q ss_pred             C---eEEEEEeCCCCCeEEEEEcCC---C-----------CEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEE
Q 005235          570 Q---RLIKKLETGLKEVSSIAIHPA---G-----------DNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAF  631 (707)
Q Consensus       570 ~---~~~~~l~~~~~~I~sl~~spd---g-----------~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vaf  631 (707)
                      .   ...+....|.-.|++++|.|.   |           ..|++|+.|..|+||+.+.+. ..-++|.+|...|+.|+|
T Consensus       136 ~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw  215 (299)
T KOG1332|consen  136 SGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW  215 (299)
T ss_pred             CCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh
Confidence            4   233445678888999999986   4           569999999999999998753 334569999999999999


Q ss_pred             cCCC----CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          632 HRSY----PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       632 spdg----~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .|.-    ..|||||.||+|.||....  +..+ -...++..   ....    +..+.||+.|..|+.++.|+.|.+|.
T Consensus       216 aP~~gl~~s~iAS~SqDg~viIwt~~~--e~e~-wk~tll~~---f~~~----~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  216 APSVGLPKSTIASCSQDGTVIIWTKDE--EYEP-WKKTLLEE---FPDV----VWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             ccccCCCceeeEEecCCCcEEEEEecC--ccCc-cccccccc---CCcc----eEEEEEeccccEEEEecCCcEEEEEE
Confidence            9964    3899999999999996531  1111 11112333   3333    99999999999999999999999994

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.9e-20  Score=207.12  Aligned_cols=257  Identities=16%  Similarity=0.177  Sum_probs=203.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCC-eEEEEEe-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          387 ACYLEYKGSTDGTVRIWEVESG-RCLRVLE-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg-~~l~~l~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      .+.++++++.||.|++|+...- ..-.++. .+..|.+++-..+   .+++++.+++|.+|....+...           
T Consensus        24 ~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~~~~-----------   89 (933)
T KOG1274|consen   24 DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSGEED-----------   89 (933)
T ss_pred             CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCCCcc-----------
Confidence            3469999999999999998765 4444555 4777888776655   5999999999999998776331           


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV  543 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~  543 (707)
                                             .++....-++.+++|+.+|+++|.|+.|-   .|++-++...... ..+ +|.++|.
T Consensus        90 -----------------------~iL~Rftlp~r~~~v~g~g~~iaagsdD~---~vK~~~~~D~s~~-~~lrgh~apVl  142 (933)
T KOG1274|consen   90 -----------------------TILARFTLPIRDLAVSGSGKMIAAGSDDT---AVKLLNLDDSSQE-KVLRGHDAPVL  142 (933)
T ss_pred             -----------------------ceeeeeeccceEEEEecCCcEEEeecCce---eEEEEeccccchh-eeecccCCcee
Confidence                                   13445677899999999999999999988   9999999888777 777 9999999


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC--------CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235          544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG--------LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK  614 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~--------~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~  614 (707)
                      ++.|+|.+.+|++++ ||.|++||+.++.+.+++.+-        ...++.++|||+|..|++.+.|+.|.+|+..... 
T Consensus       143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we-  221 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE-  221 (933)
T ss_pred             eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce-
Confidence            999999999999988 999999999999877766531        2446778999999999999999999999998874 


Q ss_pred             ceEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235          615 PYRVLK--CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW  692 (707)
Q Consensus       615 ~~~~l~--~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~  692 (707)
                      +...|+  .+...+..++|+|.|.+||+++.||.|.|||..+.               .-|..  ...|.+++|.|+.+-
T Consensus       222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~---------------~~~~~--~~~Vc~~aw~p~~n~  284 (933)
T KOG1274|consen  222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH---------------ERHEF--KRAVCCEAWKPNANA  284 (933)
T ss_pred             eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc---------------hhccc--cceeEEEecCCCCCe
Confidence            344443  23444999999999999999999999999976421               11211  123999999999887


Q ss_pred             EEEEeCCCcE
Q 005235          693 LFTAGADSVI  702 (707)
Q Consensus       693 L~s~g~Dg~I  702 (707)
                      |-.-..-|+.
T Consensus       285 it~~~~~g~~  294 (933)
T KOG1274|consen  285 ITLITALGTL  294 (933)
T ss_pred             eEEEeecccc
Confidence            6444444443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=4.6e-20  Score=183.82  Aligned_cols=231  Identities=17%  Similarity=0.254  Sum_probs=187.4

Q ss_pred             cccccceeeeccc---ccccCCCCcEEEEecCCc-cceEEeccCCCeEEEEEcCCCC--EEEEEeCCCCccEEEEEECCC
Q 005235          455 QRRVKDLLHVETP---TAPDDNMASIVSWLQHDK-LDGIRLRHFKMVSSVEWHRRGD--YLSTVMPAGESRAIFMHQLSK  528 (707)
Q Consensus       455 ~~~~~~v~~~~~~---~~~~~~d~~i~iW~~~~~-~~~~~~~h~~~V~~v~~sp~g~--~lat~s~dg~~~~V~Iwdl~~  528 (707)
                      ..|...+.+++.+   +++|++|.+|.+||+... +.+.+..|.+.|+++.|.+.-.  .|++|+.||   .|.+|+...
T Consensus        40 ~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG---~i~iw~~~~  116 (362)
T KOG0294|consen   40 SAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG---HIIIWRVGS  116 (362)
T ss_pred             cccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC---cEEEEEcCC
Confidence            4566667666666   899999999999999855 4566889999999999988765  899999999   999999999


Q ss_pred             Cceeeeee-ccCCCeEEEEEeCCCCEEEE-EeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 005235          529 KLSHRIPF-KLHGLPVSSVFHPTRSIFFV-STKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCW  606 (707)
Q Consensus       529 ~~~~~~~~-~~~~~V~~v~fspd~~~l~v-~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~v  606 (707)
                      ..+. ..+ .|.+.|+.++.||.+++.++ ++|+.+++|||..|+.-..+.-. ...+.+.|+|.|.++++++.+ .|-+
T Consensus       117 W~~~-~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i  193 (362)
T KOG0294|consen  117 WELL-KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRN-KIDI  193 (362)
T ss_pred             eEEe-eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEecc-EEEE
Confidence            9877 888 99999999999999998665 45999999999998776665543 334569999999999888775 6899


Q ss_pred             EECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE
Q 005235          607 FDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF  686 (707)
Q Consensus       607 wDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f  686 (707)
                      |.+++. ..+..+.. ...+.++.|- ++..|++|++|+.|.+||..      .   ..|+..+.+|...    |-++.+
T Consensus       194 ~q~d~A-~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d------s---~~~~~~~~AH~~R----VK~i~~  257 (362)
T KOG0294|consen  194 YQLDNA-SVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTD------S---DTPLTEFLAHENR----VKDIAS  257 (362)
T ss_pred             EecccH-hHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccC------C---Cccceeeecchhh----eeeeEE
Confidence            999865 44444432 2446666664 45678899999999999643      2   3468899999998    999885


Q ss_pred             --cCCCCEEEEEeCCCcEEEEeC
Q 005235          687 --HPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       687 --spdg~~L~s~g~Dg~IrlWdl  707 (707)
                        .|++.+|+|+|+||.|++||+
T Consensus       258 ~~~~~~~~lvTaSSDG~I~vWd~  280 (362)
T KOG0294|consen  258 YTNPEHEYLVTASSDGFIKVWDI  280 (362)
T ss_pred             EecCCceEEEEeccCceEEEEEc
Confidence              567889999999999999985

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=1.5e-20  Score=203.08  Aligned_cols=257  Identities=18%  Similarity=0.224  Sum_probs=210.6

Q ss_pred             EEEEeCCCcEEEEeCCCCe---EEEE--E---------------------------------ecCCcEEEEEEccCCCcc
Q 005235          391 EYKGSTDGTVRIWEVESGR---CLRV--L---------------------------------EIGEAIQYVAWNPLPELP  432 (707)
Q Consensus       391 l~sgs~DgtVrIWd~~tg~---~l~~--l---------------------------------~~~~~V~~v~~spdg~~~  432 (707)
                      +.|+|.|+|||+|++..+.   ..+.  +                                 .....|.+|+.+|+|+ +
T Consensus       395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-h  473 (1080)
T KOG1408|consen  395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-H  473 (1080)
T ss_pred             eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-e
Confidence            8899999999999987531   1100  0                                 0034589999999994 7


Q ss_pred             EEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc--------ccccCCCCcEEEEecCCccc--eEEeccCCCeEEE
Q 005235          433 VLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP--------TAPDDNMASIVSWLQHDKLD--GIRLRHFKMVSSV  500 (707)
Q Consensus       433 lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~--------~~~~~~d~~i~iW~~~~~~~--~~~~~h~~~V~~v  500 (707)
                      |+++...|+++||++...+.  .+..|...++++.|+        +++++.+..|.++|......  +.+-+|...|++|
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv  553 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV  553 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence            88888899999999987654  567889999999887        89999999999999875543  4477999999999


Q ss_pred             EEcCCC--CEEEEEeCCCCccEEEEEECCCCceeeeee------ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235          501 EWHRRG--DYLSTVMPAGESRAIFMHQLSKKLSHRIPF------KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR  571 (707)
Q Consensus       501 ~~sp~g--~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~------~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~  571 (707)
                      .|...|  ..+++++.|.   .|.+--..+.... ..|      -.+..+..++..|+.+++++++ |+.|+|||+..++
T Consensus       554 KFa~~gln~~MiscGADk---simFr~~qk~~~g-~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK  629 (1080)
T KOG1408|consen  554 KFACNGLNRKMISCGADK---SIMFRVNQKASSG-RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK  629 (1080)
T ss_pred             EEeecCCceEEEeccCch---hhheehhccccCc-eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence            998877  6788888876   5443333322222 333      2246788999999999999988 9999999999999


Q ss_pred             EEEEEeC---CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235          572 LIKKLET---GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAY  648 (707)
Q Consensus       572 ~~~~l~~---~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~  648 (707)
                      .++.|++   |.+..-.+...|.|.||++.+.|+++.++|.-++ .++.++.+|...|+.+.|.+|-+.|++.+.||.|.
T Consensus       630 q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF  708 (1080)
T KOG1408|consen  630 QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF  708 (1080)
T ss_pred             eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence            9999986   4456778899999999999999999999999987 88999999999999999999999999999999999


Q ss_pred             EEecc
Q 005235          649 VFHGM  653 (707)
Q Consensus       649 Vwd~~  653 (707)
                      ||.+.
T Consensus       709 vW~lp  713 (1080)
T KOG1408|consen  709 VWKLP  713 (1080)
T ss_pred             EEECc
Confidence            99653

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.6e-20  Score=183.28  Aligned_cols=251  Identities=18%  Similarity=0.253  Sum_probs=188.3

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+-|+++.|.+-| +++++++.|++|.||+......                          .|...    .....|.+.
T Consensus        13 ~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~--------------------------~W~~T----s~Wrah~~S   61 (361)
T KOG2445|consen   13 KDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSG--------------------------TWSCT----SSWRAHDGS   61 (361)
T ss_pred             cceeeeeeecccC-ceeeeccCCCcEEEEeccCCCC--------------------------ceEEe----eeEEecCCc
Confidence            4568999999999 5899999999999999644321                          12111    124579999


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCC-------cee-eeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeE
Q 005235          497 VSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKK-------LSH-RIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNI  562 (707)
Q Consensus       497 V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~-------~~~-~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I  562 (707)
                      |..|.|.+  -|+.+|+++.|+   ++.||.-...       +-. ...+ ...+.|+.|.|.|.  |-.|++++ ||.|
T Consensus        62 i~rV~WAhPEfGqvvA~cS~Dr---tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~l  138 (361)
T KOG2445|consen   62 IWRVVWAHPEFGQVVATCSYDR---TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGIL  138 (361)
T ss_pred             EEEEEecCccccceEEEEecCC---ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEE
Confidence            99999955  589999999988   9999986211       111 1344 77889999999995  55677776 9999


Q ss_pred             EEEECCCC------eEEEEEe-------CCCCCeEEEEEcCCC---CEEEEEECC-----CcEEEEECCCCCc---ceEE
Q 005235          563 RVYDLLKQ------RLIKKLE-------TGLKEVSSIAIHPAG---DNLIVGSRE-----GKLCWFDMDLSSK---PYRV  618 (707)
Q Consensus       563 ~iwDl~~~------~~~~~l~-------~~~~~I~sl~~spdg---~~L~sGs~D-----g~I~vwDl~~~~~---~~~~  618 (707)
                      |||+.-.-      .+...++       .+.....|+.|+|..   .+||+|+.+     +.+.||......+   .+.+
T Consensus       139 RIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~  218 (361)
T KOG2445|consen  139 RIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE  218 (361)
T ss_pred             EEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence            99987542      2222222       344667899999753   678888876     5789998776542   3446


Q ss_pred             eecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEeccc-----------ccCCCCCCcccceEEeeCCCCCCCCCeeE
Q 005235          619 LKCHPKDITNVAFHRS----YPLFASCSDDCTAYVFHGMV-----------YSDLNQNPLIVPLEILRGHTSSNGRGVMD  683 (707)
Q Consensus       619 l~~h~~~I~~vafspd----g~llaSgs~Dg~I~Vwd~~~-----------~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~  683 (707)
                      |.+|+.+|++++|.|.    +.+||+++.|| |+||++.+           ..+.+..-.+..+..+.+|...    |..
T Consensus       219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~----VWr  293 (361)
T KOG2445|consen  219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE----VWR  293 (361)
T ss_pred             cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc----eEE
Confidence            7799999999999995    45999999999 99999873           1222222233445667889887    999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEe
Q 005235          684 CKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       684 l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      +.|.-.|..|+|.|.||+||+|.
T Consensus       294 v~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  294 VRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             EEEeeeeeEEeecCCCceeeehh
Confidence            99999999999999999999994

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.2e-20  Score=187.34  Aligned_cols=260  Identities=18%  Similarity=0.205  Sum_probs=209.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT  468 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~  468 (707)
                      .+++.-.++++.      .+.++.+.+ .+.|+.|+-..... .+-+++.|.+.+||.++++.+.               
T Consensus       126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL---------------  183 (481)
T KOG0300|consen  126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACL---------------  183 (481)
T ss_pred             hheeeecCCcee------EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccce---------------
Confidence            455556666643      234445555 67788887766552 5556677888888887766332               


Q ss_pred             cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEEC------CC--------------
Q 005235          469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQL------SK--------------  528 (707)
Q Consensus       469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl------~~--------------  528 (707)
                                         ....+|.+.|++|.||+.+.++++++.|+   +..||..      ..              
T Consensus       184 -------------------~~Y~GH~GSVNsikfh~s~~L~lTaSGD~---taHIW~~av~~~vP~~~a~~~hSsEeE~e  241 (481)
T KOG0300|consen  184 -------------------ATYTGHTGSVNSIKFHNSGLLLLTASGDE---TAHIWKAAVNWEVPSNNAPSDHSSEEEEE  241 (481)
T ss_pred             -------------------eeecccccceeeEEeccccceEEEccCCc---chHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence                               24669999999999999999999999988   8888871      11              


Q ss_pred             ----------------Cceee---eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEE
Q 005235          529 ----------------KLSHR---IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIA  587 (707)
Q Consensus       529 ----------------~~~~~---~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~  587 (707)
                                      +....   ..| +|.+.|.+..|-..|..+++++ |++..+||+.++.++..|.+|....+.++
T Consensus       242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs  321 (481)
T KOG0300|consen  242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCS  321 (481)
T ss_pred             cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccc
Confidence                            00111   233 7788899999999999999999 99999999999999999999999999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccce
Q 005235          588 IHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPL  667 (707)
Q Consensus       588 ~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl  667 (707)
                      -||..+++++.|.|.+.++||++..-..+..|++|+..|+++.|..+.+ +++||+|.+|+|||++      ...  .|+
T Consensus       322 tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLr------NMR--spl  392 (481)
T KOG0300|consen  322 THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLR------NMR--SPL  392 (481)
T ss_pred             cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeec------ccc--Ccc
Confidence            9999999999999999999999976667889999999999999998765 7899999999999654      322  257


Q ss_pred             EEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          668 EILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       668 ~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .+++....     ++.++.+..++.|+.--.+..||||||
T Consensus       393 ATIRtdS~-----~NRvavs~g~~iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  393 ATIRTDSP-----ANRVAVSKGHPIIAIPHDNRQVRLFDL  427 (481)
T ss_pred             eeeecCCc-----cceeEeecCCceEEeccCCceEEEEec
Confidence            77776654     899999999999999999999999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.86  E-value=9.9e-21  Score=198.62  Aligned_cols=208  Identities=15%  Similarity=0.198  Sum_probs=164.6

Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-----ccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235          489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHPTRSIFFVST-KKNI  562 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~s-dg~I  562 (707)
                      .+.+|+..|.++++.|.|..|++|+.|-   .|++||+.........|     .....|.+++|++.|..|++.+ ....
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy---~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDY---TVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccc---eEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            4668899999999999999999999998   99999998654331223     3356799999999998888776 7889


Q ss_pred             EEEECCCCeEEEE------------EeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEee-----cCCC
Q 005235          563 RVYDLLKQRLIKK------------LETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLK-----CHPK  624 (707)
Q Consensus       563 ~iwDl~~~~~~~~------------l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-----~h~~  624 (707)
                      +|+|-.....+..            -++|...++|.+|||.. ..++++++||++++||+.......+++.     +..-
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            9999654333322            24677889999999986 5789999999999999987655555554     2234


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235          625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                      +++.++|+|+|++||+|+.||+|++|+..   ....++.   ...-..|..  +.+|++|+||++|++|+|-|.|++++|
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~---~~~v~p~---~~vk~AH~~--g~~Itsi~FS~dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKG---SRTVRPV---MKVKDAHLP--GQDITSISFSYDGNYLLSRGFDDTLKV  390 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecC---Ccccccc---eEeeeccCC--CCceeEEEeccccchhhhccCCCceee
Confidence            78999999999999999999999999643   2222332   344456654  245999999999999999999999999


Q ss_pred             EeC
Q 005235          705 YCH  707 (707)
Q Consensus       705 Wdl  707 (707)
                      |||
T Consensus       391 WDL  393 (641)
T KOG0772|consen  391 WDL  393 (641)
T ss_pred             eec
Confidence            997

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.3e-20  Score=184.55  Aligned_cols=273  Identities=18%  Similarity=0.273  Sum_probs=203.4

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      -|+..+.+++.|..||.|.|||+.|.+.-+.+.. ..+|.|++||++| +.|++++.|..|.+||+..|...        
T Consensus        30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l--------  100 (405)
T KOG1273|consen   30 QFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPL--------  100 (405)
T ss_pred             EeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCce--------
Confidence            4899999999999999999999999887777766 7899999999999 68999999999999998776421        


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec----
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK----  537 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~----  537 (707)
                                                 ..+...++|..+.|||.....+.++.-..  .-.+-+++.......+..    
T Consensus       101 ---------------------------~rirf~spv~~~q~hp~k~n~~va~~~~~--sp~vi~~s~~~h~~Lp~d~d~d  151 (405)
T KOG1273|consen  101 ---------------------------KRIRFDSPVWGAQWHPRKRNKCVATIMEE--SPVVIDFSDPKHSVLPKDDDGD  151 (405)
T ss_pred             ---------------------------eEEEccCccceeeeccccCCeEEEEEecC--CcEEEEecCCceeeccCCCccc
Confidence                                       23456889999999995543333332111  233334433222112221    


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC--
Q 005235          538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS--  613 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~--  613 (707)
                      ......+..|++.|+++++|+ .|.+.+||..+.+++..+.-.. ..|.++.|+..|+.|++.+.|+.|+.|++..-.  
T Consensus       152 ln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~  231 (405)
T KOG1273|consen  152 LNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE  231 (405)
T ss_pred             cccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence            122333456999999999999 7999999999999998887665 779999999999999999999999999986210  


Q ss_pred             ------cceEEeec--CCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235          614 ------KPYRVLKC--HPKDITNVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC  684 (707)
Q Consensus       614 ------~~~~~l~~--h~~~I~~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l  684 (707)
                            .+.+.++.  ....-.+++||.+|.+++.++. -..++||      .-..+.+   ++.|.|..+.   -..++
T Consensus       232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIW------E~~~GsL---VKILhG~kgE---~l~DV  299 (405)
T KOG1273|consen  232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIW------EKSIGSL---VKILHGTKGE---ELLDV  299 (405)
T ss_pred             CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEE------ecCCcce---eeeecCCchh---heeec
Confidence                  11111111  1223457899999998887774 3579999      4344444   8889888743   28899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEe
Q 005235          685 KFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       685 ~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .|||-.+.|++- +.|+|++|.
T Consensus       300 ~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  300 NWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             ccccceeeeeec-cCCceEEEE
Confidence            999999999998 789999996

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.86  E-value=3.9e-21  Score=197.27  Aligned_cols=240  Identities=12%  Similarity=0.132  Sum_probs=196.0

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|+.+.|-++.+ .|++++.|..|.+|++......                                ....+.+..+.
T Consensus       175 ~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~--------------------------------~~~tLaGs~g~  221 (459)
T KOG0288|consen  175 EGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSE--------------------------------LISTLAGSLGN  221 (459)
T ss_pred             ccccceeEEccCcc-hhhhcchhhhhhhhhcccchhh--------------------------------hhhhhhccCCC
Confidence            67889999999963 7999999999999997654211                                11234567788


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~  574 (707)
                      |+.+.|.+++.++++.+.|+   .+++|++...+.. .+| +|...|+++.|.-....+++|+ |++|++||+.+..+.+
T Consensus       222 it~~d~d~~~~~~iAas~d~---~~r~Wnvd~~r~~-~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  222 ITSIDFDSDNKHVIAASNDK---NLRLWNVDSLRLR-HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             cceeeecCCCceEEeecCCC---ceeeeeccchhhh-hhhcccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence            99999999999999999988   9999999999988 889 9999999999988777677777 9999999999999998


Q ss_pred             EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235          575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV  654 (707)
Q Consensus       575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~  654 (707)
                      ++... ..+..|+.+  +..+++|..|++|++||.+.. .+......+. .|+++..++++..|.+++.|.++.+.|++ 
T Consensus       298 t~l~~-S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlR-  371 (459)
T KOG0288|consen  298 TVLPG-SQCNDIVCS--ISDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLR-  371 (459)
T ss_pred             ccccc-ccccceEec--ceeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecc-
Confidence            87755 445666665  668899999999999999977 6677777665 89999999999999999999999999554 


Q ss_pred             ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                           +....   ..+.......+.-++.+.|||++.|+++||.||.|+||++
T Consensus       372 -----t~eI~---~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v  416 (459)
T KOG0288|consen  372 -----TKEIR---QTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV  416 (459)
T ss_pred             -----cccEE---EEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence                 44432   2232222111223889999999999999999999999985

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=5.4e-20  Score=197.58  Aligned_cols=279  Identities=17%  Similarity=0.185  Sum_probs=203.3

Q ss_pred             CcccCCCCcEEEEEeCCCcEEEEeCCCCeE------EEEEe-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch
Q 005235          381 LKPYPVACYLEYKGSTDGTVRIWEVESGRC------LRVLE-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE  453 (707)
Q Consensus       381 l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~------l~~l~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~  453 (707)
                      ..+.|....+||.+..||.|.++|...-..      ++.+. +...|..+.|.| |+..|++++.|.++++||+......
T Consensus        57 Fs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~  135 (720)
T KOG0321|consen   57 FSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLV  135 (720)
T ss_pred             ccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceee
Confidence            334567778999999999999999764321      12222 278999999999 6678999999999999998765321


Q ss_pred             hcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCcee
Q 005235          454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSH  532 (707)
Q Consensus       454 ~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~  532 (707)
                      -                                .....+|.+.|.+++|++. ...|++|+.||   .|.|||++-....
T Consensus       136 G--------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg---~illWD~R~n~~d  180 (720)
T KOG0321|consen  136 G--------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDG---EILLWDCRCNGVD  180 (720)
T ss_pred             c--------------------------------ceeecccccccchhhhccCCCcceeeccCCC---cEEEEEEeccchh
Confidence            0                                0136699999999999995 46899999999   9999998643200


Q ss_pred             -------------------eeee--------ccCCCeEE---EEEeCCCCEEEEEe--CCeEEEEECCCCeEEEE-----
Q 005235          533 -------------------RIPF--------KLHGLPVS---SVFHPTRSIFFVST--KKNIRVYDLLKQRLIKK-----  575 (707)
Q Consensus       533 -------------------~~~~--------~~~~~V~~---v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~-----  575 (707)
                                         ..++        .+...|.+   +.+..|...|++++  |+.|+||||++......     
T Consensus       181 ~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~  260 (720)
T KOG0321|consen  181 ALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG  260 (720)
T ss_pred             hHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc
Confidence                               0011        12334444   55666777888876  99999999998643322     


Q ss_pred             ---EeCC---CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCC--EEEEEEcCCCCEEEEEeCCCc
Q 005235          576 ---LETG---LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKD--ITNVAFHRSYPLFASCSDDCT  646 (707)
Q Consensus       576 ---l~~~---~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~--I~~vafspdg~llaSgs~Dg~  646 (707)
                         +..+   .-.+.++.....|.+|++.+.|+.|+.|++.... .|+..+.++...  -..-..+|++.++++|+.|..
T Consensus       261 ~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~  340 (720)
T KOG0321|consen  261 SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ  340 (720)
T ss_pred             ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence               2223   2347888888899999999999999999997642 455555544321  122346899999999999999


Q ss_pred             EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 005235          647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVIRLYCH  707 (707)
Q Consensus       647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~IrlWdl  707 (707)
                      .++|.+.      ..  ..+...+.||...    |++++|.|..- -++|++.|.+++||+|
T Consensus       341 ayiw~vs------~~--e~~~~~l~Ght~e----Vt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  341 AYIWVVS------SP--EAPPALLLGHTRE----VTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             eeeeeec------Cc--cCChhhhhCcceE----EEEEeeccccCCCceeeccCcceEEEec
Confidence            9999653      22  1346678999988    99999987432 3677799999999986

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.7e-20  Score=205.23  Aligned_cols=268  Identities=18%  Similarity=0.209  Sum_probs=202.0

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch----hccccc-----ceeeeccc------ccccCCCCcEEEEe
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE----EQRRVK-----DLLHVETP------TAPDDNMASIVSWL  481 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~----~~~~~~-----~v~~~~~~------~~~~~~d~~i~iW~  481 (707)
                      ....++|..+++-. .++++ ....+.||.+......    +.....     .+..+.+.      +++++..|.|.+|+
T Consensus        39 k~~~nAIs~nr~~~-qiv~A-Grs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   39 KAKANAISVNRDIN-QIVVA-GRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD  116 (839)
T ss_pred             ccccceEeecCCcc-eeEEe-cccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence            45667777777763 34433 3445666665543221    110111     11122222      88999999999999


Q ss_pred             cCC----ccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC-EE
Q 005235          482 QHD----KLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS-IF  554 (707)
Q Consensus       482 ~~~----~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~-~l  554 (707)
                      +..    +....+..|...+.++.||+. ..+|++|+.||   .|++||++..... .+| .....|..|+|+|.-. .|
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg---~vK~~DlR~~~S~-~t~~~nSESiRDV~fsp~~~~~F  192 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDG---TVKCWDLRSKKSK-STFRSNSESIRDVKFSPGYGNKF  192 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCc---eEEEEeeeccccc-ccccccchhhhceeeccCCCceE
Confidence            975    222346789999999999984 56889999999   9999999998887 777 7778999999999644 45


Q ss_pred             EEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEE
Q 005235          555 FVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAF  631 (707)
Q Consensus       555 ~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vaf  631 (707)
                      +++. .|.+++||++.. ++..++..|.++|.|+.|||++.+||+|+.|+.|+|||+..+. .+..++. -..+|..|.|
T Consensus       193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkW  271 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKW  271 (839)
T ss_pred             EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeee
Confidence            5555 599999999864 6788899999999999999999999999999999999998542 3333333 2478999999


Q ss_pred             cCCCC-EEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEE
Q 005235          632 HRSYP-LFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP-RQPWLFTAGADSVIR  703 (707)
Q Consensus       632 spdg~-llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp-dg~~L~s~g~Dg~Ir  703 (707)
                      -|..+ .||+|+  .|-.|+|||++      .  ...|..++..|+..    |+.++|-. |...|.+++.||+|.
T Consensus       272 RP~~~~hLAtcsmv~dtsV~VWDvr------R--PYIP~~t~~eH~~~----vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  272 RPARSYHLATCSMVVDTSVHVWDVR------R--PYIPYATFLEHTDS----VTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             ccCccchhhhhhccccceEEEEeec------c--ccccceeeeccCcc----ccceeccCCCceeeEeecCccHHH
Confidence            99876 677777  67899999654      2  23478899999998    99999965 445789999999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.85  E-value=9.7e-21  Score=197.77  Aligned_cols=248  Identities=17%  Similarity=0.193  Sum_probs=196.4

Q ss_pred             eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccce
Q 005235          409 RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG  488 (707)
Q Consensus       409 ~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~  488 (707)
                      +.+.++.+++-|.++++|...  ..+-.+.-|.|+|||+.......                     .+...        
T Consensus       411 rq~~tL~HGEvVcAvtIS~~t--rhVyTgGkgcVKVWdis~pg~k~---------------------PvsqL--------  459 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISNPT--RHVYTGGKGCVKVWDISQPGNKS---------------------PVSQL--------  459 (705)
T ss_pred             HhhhhhccCcEEEEEEecCCc--ceeEecCCCeEEEeeccCCCCCC---------------------ccccc--------
Confidence            455667778888999998877  45555666789999976531110                     00000        


Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEE
Q 005235          489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVY  565 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iw  565 (707)
                      ........|.++.++|+|+.|++|+.-.   +|.|||+....... ..+ ...-.+++++.+||.+..|++. ||.|.||
T Consensus       460 dcl~rdnyiRSckL~pdgrtLivGGeas---tlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vw  536 (705)
T KOG0639|consen  460 DCLNRDNYIRSCKLLPDGRTLIVGGEAS---TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW  536 (705)
T ss_pred             cccCcccceeeeEecCCCceEEeccccc---eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE
Confidence            1223456789999999999999999866   99999998765431 222 3334677899999999988776 9999999


Q ss_pred             ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235          566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg  645 (707)
                      ||..+.+++.|++|...++||+++++|..|-+|+-|++|+-||++.+.++ ... .....|.++.++|.+.+||.|-..+
T Consensus       537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql-qqh-dF~SQIfSLg~cP~~dWlavGMens  614 (705)
T KOG0639|consen  537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL-QQH-DFSSQIFSLGYCPTGDWLAVGMENS  614 (705)
T ss_pred             EcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh-hhh-hhhhhheecccCCCccceeeecccC
Confidence            99999999999999999999999999999999999999999999987432 222 2357899999999999999999999


Q ss_pred             cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .|-|-+.....          ...+.-|...    |+++.|.+.|+|+++.|.|+.+-.|.
T Consensus       615 ~vevlh~skp~----------kyqlhlheSc----VLSlKFa~cGkwfvStGkDnlLnawr  661 (705)
T KOG0639|consen  615 NVEVLHTSKPE----------KYQLHLHESC----VLSLKFAYCGKWFVSTGKDNLLNAWR  661 (705)
T ss_pred             cEEEEecCCcc----------ceeecccccE----EEEEEecccCceeeecCchhhhhhcc
Confidence            99998754221          4567778877    99999999999999999999988885

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.85  E-value=1.7e-18  Score=181.75  Aligned_cols=244  Identities=11%  Similarity=0.113  Sum_probs=176.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEE-EeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAV-SVGQDVLILNTGLGNEEEQRRVKDLLHVETPT  468 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~-s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~  468 (707)
                      ++++++.++.|++||+.+++.+..+.....+..++|+|+++ .++++ +.++.|.+||+.+....               
T Consensus        45 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~~~~~l~~~d~~~~~~~---------------  108 (300)
T TIGR03866        45 LYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGK-ILYIANEDDNLVTVIDIETRKVL---------------  108 (300)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCC-EEEEEcCCCCeEEEEECCCCeEE---------------
Confidence            44677889999999999999888777655578899999994 45444 35788999987653110               


Q ss_pred             cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEe
Q 005235          469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFH  548 (707)
Q Consensus       469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fs  548 (707)
                                          ....+...+.+++|+|+|.++++++.++  ..+.+|+..+.... ..+.....+.+++|+
T Consensus       109 --------------------~~~~~~~~~~~~~~~~dg~~l~~~~~~~--~~~~~~d~~~~~~~-~~~~~~~~~~~~~~s  165 (300)
T TIGR03866       109 --------------------AEIPVGVEPEGMAVSPDGKIVVNTSETT--NMAHFIDTKTYEIV-DNVLVDQRPRFAEFT  165 (300)
T ss_pred             --------------------eEeeCCCCcceEEECCCCCEEEEEecCC--CeEEEEeCCCCeEE-EEEEcCCCccEEEEC
Confidence                                1112233467899999999999988754  25778898877654 333333456789999


Q ss_pred             CCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC-------CCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcceEE
Q 005235          549 PTRSIFFVST--KKNIRVYDLLKQRLIKKLETGL-------KEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPYRV  618 (707)
Q Consensus       549 pd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~-------~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~~~  618 (707)
                      |++.+|++++  ++.|++||+.+++.+..+..+.       .....++|+|+|++++++ +.++.|.+||+.++ +....
T Consensus       166 ~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~~  244 (300)
T TIGR03866       166 ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVLDY  244 (300)
T ss_pred             CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence            9999887654  7999999999998877665321       123568899999986554 45678999999876 54544


Q ss_pred             eecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235          619 LKCHPKDITNVAFHRSYPLFASC-SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       619 l~~h~~~I~~vafspdg~llaSg-s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp  688 (707)
                      +. +...+.+++|+|+|.+|+++ +.+|.|.|||      +.+...   +..+.....     .++++|+|
T Consensus       245 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d------~~~~~~---~~~~~~~~~-----~~~~~~~~  300 (300)
T TIGR03866       245 LL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID------VAALKV---IKSIKVGRL-----PWGVVVRP  300 (300)
T ss_pred             EE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEE------CCCCcE---EEEEEcccc-----cceeEeCC
Confidence            43 45579999999999988876 5689999995      444443   455554332     67788765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=6.1e-19  Score=191.04  Aligned_cols=269  Identities=14%  Similarity=0.161  Sum_probs=214.0

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCeEE-EEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGRCL-RVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l-~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      +|+.....||.+-.||.|.||++..+-+. ..+.+  +..|.+++|++.+  .|++++.+|.|.-||+.++.+..     
T Consensus        32 A~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~lk~~~-----  104 (691)
T KOG2048|consen   32 AYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHTLKQKY-----  104 (691)
T ss_pred             EEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEecccCceeE-----
Confidence            46666678999999999999999987554 34454  7899999999887  79999999999999987763321     


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-c
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-K  537 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~  537 (707)
                                                   ......+.|.+++.+|.+..++.||.||   .+..++...+.... ..| .
T Consensus       105 -----------------------------~~d~~gg~IWsiai~p~~~~l~IgcddG---vl~~~s~~p~~I~~~r~l~r  152 (691)
T KOG2048|consen  105 -----------------------------NIDSNGGAIWSIAINPENTILAIGCDDG---VLYDFSIGPDKITYKRSLMR  152 (691)
T ss_pred             -----------------------------EecCCCcceeEEEeCCccceEEeecCCc---eEEEEecCCceEEEEeeccc
Confidence                                         1334567899999999999999999998   88888887776552 334 6


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe----C----CCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE----T----GLKEVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~----~----~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                      .++.|.++.|+|++..+++|+ ||.|++||..++..++...    .    ...-|.++.|-.+ ..|++|...|+|.+||
T Consensus       153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWD  231 (691)
T ss_pred             ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEc
Confidence            679999999999999999998 9999999999987665221    1    1123677777644 4899999999999999


Q ss_pred             CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCc-ccceEEeeCCCCCCCCCeeEEEEc
Q 005235          609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPL-IVPLEILRGHTSSNGRGVMDCKFH  687 (707)
Q Consensus       609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~-~~pl~~l~gh~~~~~~gV~~l~fs  687 (707)
                      ...+ .+++.+..|.+.|.+++..+++..+++++.|+.|.-|..      .++.. .+.......|...    |.+++..
T Consensus       232 ~~~g-TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~------~~~~~~wv~~~~r~~h~hd----vrs~av~  300 (691)
T KOG2048|consen  232 SIFG-TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL------TTNKSEWVINSRRDLHAHD----VRSMAVI  300 (691)
T ss_pred             ccCc-chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe------cCCccceeeeccccCCccc----ceeeeee
Confidence            9987 788999999999999999999999999999999888843      22211 2223334455555    9999988


Q ss_pred             CCCCEEEEEeCCCcEEE
Q 005235          688 PRQPWLFTAGADSVIRL  704 (707)
Q Consensus       688 pdg~~L~s~g~Dg~Irl  704 (707)
                      ++  .|++||.|.++.+
T Consensus       301 ~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  301 EN--ALISGGRDFTLAI  315 (691)
T ss_pred             cc--eEEecceeeEEEE
Confidence            77  8999999998865

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.1e-19  Score=189.58  Aligned_cols=250  Identities=16%  Similarity=0.233  Sum_probs=193.0

Q ss_pred             EEEEE-eCCCcEEEEeCCCCeEEE-EEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          390 LEYKG-STDGTVRIWEVESGRCLR-VLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       390 ~l~sg-s~DgtVrIWd~~tg~~l~-~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      +++++ ..-..|.+|.+.....+. .+-..++|.|++-+|.| ..+++++..+.|++|.+.+|...              
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL--------------  116 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILL--------------  116 (476)
T ss_pred             heeeecccCccccccccCchhhhhhhcccccceeeeecCCCc-eEEEeecccCcEEEEEeccccHH--------------
Confidence            34443 344578999987654443 33338999999999999 34555559999999999887432              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC------cee--eeee-cc
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK------LSH--RIPF-KL  538 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~------~~~--~~~~-~~  538 (707)
                                          ..+..|-..|+|+.|+.||.+|+|++.||   .|.+|.+..-      ...  ...| .|
T Consensus       117 --------------------~v~~aHYQ~ITcL~fs~dgs~iiTgskDg---~V~vW~l~~lv~a~~~~~~~p~~~f~~H  173 (476)
T KOG0646|consen  117 --------------------NVLSAHYQSITCLKFSDDGSHIITGSKDG---AVLVWLLTDLVSADNDHSVKPLHIFSDH  173 (476)
T ss_pred             --------------------HHHHhhccceeEEEEeCCCcEEEecCCCc---cEEEEEEEeecccccCCCccceeeeccC
Confidence                                12458999999999999999999999999   9999997431      111  1345 78


Q ss_pred             CCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC--
Q 005235          539 HGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS--  613 (707)
Q Consensus       539 ~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~--  613 (707)
                      .-+|+.+...+.  ...|++++ |+++++||+..+.++.++... ..|.+++++|.+..+.+|+.+|.|.+.++....  
T Consensus       174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~  252 (476)
T KOG0646|consen  174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ  252 (476)
T ss_pred             cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence            889999887664  46788888 999999999999999888755 779999999999999999999999998875432  


Q ss_pred             -------------cceEEeecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCC
Q 005235          614 -------------KPYRVLKCHPK--DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG  678 (707)
Q Consensus       614 -------------~~~~~l~~h~~--~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~  678 (707)
                                   ..+..+.+|..  +|+|++++-||.+|++|+.||.|+||      |..+..+   ++++....++  
T Consensus       253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW------di~S~Q~---iRtl~~~kgp--  321 (476)
T KOG0646|consen  253 SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW------DIYSKQC---IRTLQTSKGP--  321 (476)
T ss_pred             cccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE------ecchHHH---HHHHhhhccc--
Confidence                         23567789988  99999999999999999999999999      4445544   4444433333  


Q ss_pred             CCeeEEEEcCCCC
Q 005235          679 RGVMDCKFHPRQP  691 (707)
Q Consensus       679 ~gV~~l~fspdg~  691 (707)
                        |+.+.+.|-.+
T Consensus       322 --VtnL~i~~~~~  332 (476)
T KOG0646|consen  322 --VTNLQINPLER  332 (476)
T ss_pred             --cceeEeecccc
Confidence              77777755433

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=5.8e-19  Score=175.90  Aligned_cols=242  Identities=14%  Similarity=0.147  Sum_probs=189.6

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|.+|.|+|.++ .|++++.||++++|++...+.                                   .....|..+
T Consensus        13 ~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l-----------------------------------~~~~~~~~p   56 (323)
T KOG1036|consen   13 EDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSL-----------------------------------KLKFKHGAP   56 (323)
T ss_pred             hhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhh-----------------------------------hhheecCCc
Confidence            57899999998874 799999999999999765421                                   124578999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK  575 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~  575 (707)
                      +.+++|.+ ...+++|+.||   .|+.+|+.++... ..-.|...|+|+.+.+-...+++|+ |++|++||.+....+..
T Consensus        57 lL~c~F~d-~~~~~~G~~dg---~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~  131 (323)
T KOG1036|consen   57 LLDCAFAD-ESTIVTGGLDG---QVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT  131 (323)
T ss_pred             eeeeeccC-CceEEEeccCc---eEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc
Confidence            99999986 46788999998   9999999999874 3339999999999999888888888 99999999997666666


Q ss_pred             EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235          576 LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV  654 (707)
Q Consensus       576 l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~  654 (707)
                      +... ..|.|++.+  |+.|++|+.+..|.+||+++...+.+.- ..-.-.+++|++-|.+.=+|++|-||.|.+=.+. 
T Consensus       132 ~d~~-kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d-  207 (323)
T KOG1036|consen  132 FDQG-KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD-  207 (323)
T ss_pred             cccC-ceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccC-
Confidence            6554 478888875  8899999999999999999865544221 1234568999999988889999999999886442 


Q ss_pred             ccCCCCCCcccceEEeeCCCCCC-----CCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          655 YSDLNQNPLIVPLEILRGHTSSN-----GRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       655 ~~Dl~~~~~~~pl~~l~gh~~~~-----~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                         ... ....--..|+.|....     ...|++++|||--..|||||.||.|.+||+
T Consensus       208 ---~s~-~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~  261 (323)
T KOG1036|consen  208 ---DSE-EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL  261 (323)
T ss_pred             ---Cch-HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence               110 0001134566664321     123899999999999999999999999985

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2.4e-21  Score=210.39  Aligned_cols=200  Identities=19%  Similarity=0.288  Sum_probs=183.3

Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL  567 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl  567 (707)
                      ...|...|.++..-..+..+++|+.+.   .+-+|.+.+.... ..| .|.++|.++.|++...+|++|+ +|+|++|||
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~---k~~L~~i~kp~~i-~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl   99 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDE---KVNLWAIGKPNAI-TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL   99 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCce---eeccccccCCchh-heeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence            446888888888877788999999887   8889999988887 677 9999999999999999999888 899999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235          568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTA  647 (707)
Q Consensus       568 ~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I  647 (707)
                      ...+.+++|.+|...+.+++|||-|.+++.|+.|+.+++||.+.. .+.+.+.+|...|..+.|+|+|+++++|++|.++
T Consensus       100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv  178 (825)
T KOG0267|consen  100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV  178 (825)
T ss_pred             hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence            999999999999999999999999999999999999999999865 6889999999999999999999999999999999


Q ss_pred             EEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          648 YVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       648 ~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +||      |+..+.+   +..|.+|...    |..+.|||..-.|++||.|++|++||+
T Consensus       179 ki~------d~~agk~---~~ef~~~e~~----v~sle~hp~e~Lla~Gs~d~tv~f~dl  225 (825)
T KOG0267|consen  179 KIW------DLTAGKL---SKEFKSHEGK----VQSLEFHPLEVLLAPGSSDRTVRFWDL  225 (825)
T ss_pred             eee------ccccccc---cccccccccc----ccccccCchhhhhccCCCCceeeeecc
Confidence            999      5556655   7889999988    999999999999999999999999996

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=7.4e-19  Score=190.51  Aligned_cols=377  Identities=14%  Similarity=0.178  Sum_probs=265.8

Q ss_pred             CCCCCCCcc-----ccCCCCC---ccCC---hhhhhhhhccC-----cCCCCc---ccCc--ccceecccc---cccccc
Q 005235          288 KPKLPGHEE-----SYNPSLE---YIPT---QEELNSYQLMY-----EEDRPK---FIPR--RFTSLRSVP---AYENAV  343 (707)
Q Consensus       288 k~~lpgh~~-----synP~ge---~L~s---~~~~~~W~~~~-----~~dr~~---~lp~--~~~~lr~v~---~~~~~i  343 (707)
                      ...|.||.+     +|+-.+.   +|+|   +..++.|...-     ...|..   -+++  .+.++-.+.   ..+..+
T Consensus       184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall  263 (764)
T KOG1063|consen  184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALL  263 (764)
T ss_pred             EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhh
Confidence            347888887     4776654   6777   44578886421     111222   1121  122222221   223445


Q ss_pred             cccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCC--CeEEEEEec-----
Q 005235          344 KDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVES--GRCLRVLEI-----  416 (707)
Q Consensus       344 ~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t--g~~l~~l~~-----  416 (707)
                      .+|-+-+..+.|.|..                             -.|+++|.|.++.||...+  |--+.....     
T Consensus       264 ~GHeDWV~sv~W~p~~-----------------------------~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg  314 (764)
T KOG1063|consen  264 MGHEDWVYSVWWHPEG-----------------------------LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG  314 (764)
T ss_pred             cCcccceEEEEEccch-----------------------------hhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence            5666666777777654                             2688899999999998764  433333333     


Q ss_pred             -CCcEEEEEEccCCCccEEEEEeCCeEEEEECCC-----CCchhcccccceeeeccc-----ccccCCCCcEEEEecCCc
Q 005235          417 -GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL-----GNEEEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDK  485 (707)
Q Consensus       417 -~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~-----~~~~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~  485 (707)
                       .+...+..|+|+++ .+++-+..|..++|....     ....+.+|.+.+..+.+.     +.+.+.|.+.+++..-+.
T Consensus       315 ~a~GF~g~lw~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~  393 (764)
T KOG1063|consen  315 SAGGFWGGLWSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR  393 (764)
T ss_pred             cccceeeEEEcCCCC-EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence             34588999999994 788889999999999333     234677888999888886     788888999998876533


Q ss_pred             cc-----eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC--------------------------------
Q 005235          486 LD-----GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK--------------------------------  528 (707)
Q Consensus       486 ~~-----~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~--------------------------------  528 (707)
                      +.     ..-.-|...++|++|-+..-.|++|+...   .+++++..+                                
T Consensus       394 q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEK---VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLS  470 (764)
T KOG1063|consen  394 QQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEK---VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLS  470 (764)
T ss_pred             ccceeeecccccccccceeeehccCCceeeecccce---eeeeecCcHHHHHHHHHHhCccccCchhccccccccccccc
Confidence            32     12345888999999988666788877655   677776321                                


Q ss_pred             -----------Cce-----e---------------------------eeee-ccCCCeEEEEEeCCCCEEEEEe--C---
Q 005235          529 -----------KLS-----H---------------------------RIPF-KLHGLPVSSVFHPTRSIFFVST--K---  559 (707)
Q Consensus       529 -----------~~~-----~---------------------------~~~~-~~~~~V~~v~fspd~~~l~v~s--d---  559 (707)
                                 +..     +                           ...+ +|.-.|.+++.+|+++++++++  .   
T Consensus       471 nKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e  550 (764)
T KOG1063|consen  471 NKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE  550 (764)
T ss_pred             CCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc
Confidence                       000     0                           0112 5667899999999999999986  1   


Q ss_pred             -CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc---eEEeecCCCCEEEEEEcCCC
Q 005235          560 -KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP---YRVLKCHPKDITNVAFHRSY  635 (707)
Q Consensus       560 -g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~---~~~l~~h~~~I~~vafspdg  635 (707)
                       ..|++|+..+-..++.+.+|.-.|+.|+|||||++|++.|.|+++.+|........   +..++.|+.-|+++.|+|++
T Consensus       551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde  630 (764)
T KOG1063|consen  551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE  630 (764)
T ss_pred             ceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence             46999999988888889999999999999999999999999999999988654332   34478999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC----CC-EEEEEeCCCcEEEEe
Q 005235          636 PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR----QP-WLFTAGADSVIRLYC  706 (707)
Q Consensus       636 ~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd----g~-~L~s~g~Dg~IrlWd  706 (707)
                      .+|||||.|.+|+||...   +.. ...+..+ ....+...    |+.++|.|-    .. .++.|-..|.|.||.
T Consensus       631 ~~FaTaSRDK~VkVW~~~---~~~-d~~i~~~-a~~~~~~a----VTAv~~~~~~~~e~~~~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  631 KYFATASRDKKVKVWEEP---DLR-DKYISRF-ACLKFSLA----VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR  697 (764)
T ss_pred             ceeEEecCCceEEEEecc---Cch-hhhhhhh-chhccCCc----eeeEEeeccccccccceEEEEecccEEEEEe
Confidence            999999999999999543   111 0111111 22344554    999999872    22 567777889999996

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=4.9e-20  Score=201.77  Aligned_cols=236  Identities=17%  Similarity=0.246  Sum_probs=189.8

Q ss_pred             CCCCCcccCCCCcEEEEEeCCCcEEEEeCCC---CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc
Q 005235          377 SRKDLKPYPVACYLEYKGSTDGTVRIWEVES---GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE  452 (707)
Q Consensus       377 ~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t---g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~  452 (707)
                      +-.++++-....+++|+++..|.|.+||+..   .+.+..|.- ...|+++.|++.....|++|+.||+|++||+.....
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            3445555556678999999999999999976   333334433 789999999998877889999999999999876432


Q ss_pred             hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCce
Q 005235          453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLS  531 (707)
Q Consensus       453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~  531 (707)
                      .                                  ....+....|..|.|+| .+.+|+++...|   .+.+||++....
T Consensus       169 ~----------------------------------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG---~lqlWDlRqp~r  211 (839)
T KOG0269|consen  169 K----------------------------------STFRSNSESIRDVKFSPGYGNKFASIHDSG---YLQLWDLRQPDR  211 (839)
T ss_pred             c----------------------------------ccccccchhhhceeeccCCCceEEEecCCc---eEEEeeccCchh
Confidence            1                                  12335677899999998 578899999887   999999998765


Q ss_pred             eeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--EEEEEeCCCCCeEEEEEcCCCC-EEEEEEC--CCcE
Q 005235          532 HRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--LIKKLETGLKEVSSIAIHPAGD-NLIVGSR--EGKL  604 (707)
Q Consensus       532 ~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~~~~l~~~~~~I~sl~~spdg~-~L~sGs~--Dg~I  604 (707)
                      ....| .|.|+|.|+.|||++.+||+|+ |+.|+|||+.+.+  .+.++... .+|.++.|-|... +|++++.  |-.|
T Consensus       212 ~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-apv~rVkWRP~~~~hLAtcsmv~dtsV  290 (839)
T KOG0269|consen  212 CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-APVGRVKWRPARSYHLATCSMVVDTSV  290 (839)
T ss_pred             HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec-ceeeeeeeccCccchhhhhhccccceE
Confidence            43666 9999999999999999999999 9999999998653  44455443 6799999999875 4566554  6779


Q ss_pred             EEEECCCCCcceEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 005235          605 CWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVF  650 (707)
Q Consensus       605 ~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vw  650 (707)
                      +|||++..--|+.++..|+..++.++|-. +-..|.+|+.||+|..-
T Consensus       291 ~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh  337 (839)
T KOG0269|consen  291 HVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH  337 (839)
T ss_pred             EEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence            99999988789999999999999999965 44588899999987654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=4.6e-21  Score=208.19  Aligned_cols=252  Identities=16%  Similarity=0.209  Sum_probs=203.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTA  469 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~  469 (707)
                      +++.+..+-.++||+....-+     +...|.|+..-..+ ..+++++.+..+-+|.+......                
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~~~-----hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i----------------   63 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREFVA-----HSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAI----------------   63 (825)
T ss_pred             ccceeeeeeccccccchhhhh-----hhhhhceeeeeccc-eeeccCCCceeeccccccCCchh----------------
Confidence            344455566678888543211     14456666664444 35667777777778876443211                


Q ss_pred             ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe
Q 005235          470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH  548 (707)
Q Consensus       470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs  548 (707)
                                        ..+.+|.++|.+|.|++....|++|+.+|   +|++||+...... +++ +|...+.+|.||
T Consensus        64 ------------------~S~~~hespIeSl~f~~~E~Llaagsasg---tiK~wDleeAk~v-rtLtgh~~~~~sv~f~  121 (825)
T KOG0267|consen   64 ------------------TSLTGHESPIESLTFDTSERLLAAGSASG---TIKVWDLEEAKIV-RTLTGHLLNITSVDFH  121 (825)
T ss_pred             ------------------heeeccCCcceeeecCcchhhhcccccCC---ceeeeehhhhhhh-hhhhccccCcceeeec
Confidence                              12568999999999999999999999988   9999999998887 777 999999999999


Q ss_pred             CCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEE
Q 005235          549 PTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT  627 (707)
Q Consensus       549 pd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~  627 (707)
                      |-+.+++.++ |+.+++||++...|.+.+.+|...+.++.|+|+|+++++|+.|..++|||+..+ +....|..|.+.|.
T Consensus       122 P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~  200 (825)
T KOG0267|consen  122 PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQ  200 (825)
T ss_pred             cceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc-cccccccccccccc
Confidence            9999998887 999999999988899999999999999999999999999999999999999876 88899999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235          628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD  699 (707)
Q Consensus       628 ~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D  699 (707)
                      ++.|||..-++++||.|++|++||+.      +...+   .......    .||.+++|+|++..+++|-..
T Consensus       201 sle~hp~e~Lla~Gs~d~tv~f~dle------tfe~I---~s~~~~~----~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  201 SLEFHPLEVLLAPGSSDRTVRFWDLE------TFEVI---SSGKPET----DGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ccccCchhhhhccCCCCceeeeeccc------eeEEe---eccCCcc----CCceeeeecCCceeeecCchh
Confidence            99999999999999999999999544      33332   2222222    349999999999988887543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=1.7e-19  Score=180.16  Aligned_cols=265  Identities=17%  Similarity=0.189  Sum_probs=201.1

Q ss_pred             CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh---------------cccccceeeeccc------------ccc
Q 005235          418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE---------------QRRVKDLLHVETP------------TAP  470 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~---------------~~~~~~v~~~~~~------------~~~  470 (707)
                      .....+.|+||| ..|++.+.|+.+.+|++.......               ......++..++=            +++
T Consensus        50 nf~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~  128 (406)
T KOG2919|consen   50 NFLKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV  128 (406)
T ss_pred             hhhccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence            345678999999 589999999999999986531100               0011122222210            677


Q ss_pred             cCCCCcEEEEecCCccceE---EeccCCC---eEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-Cceee--eee-----
Q 005235          471 DDNMASIVSWLQHDKLDGI---RLRHFKM---VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-KLSHR--IPF-----  536 (707)
Q Consensus       471 ~~~d~~i~iW~~~~~~~~~---~~~h~~~---V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-~~~~~--~~~-----  536 (707)
                      .+.+..|.+|+.-++....   ...|...   ..+++|+|+|.+|++|..    +.|+|+|+.. ++...  .++     
T Consensus       129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk----rcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK----RCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc----ceEEEeeccCCCCCCcchhhhhcccc
Confidence            8889999999998776644   2334443   468999999999998874    4899999943 32210  122     


Q ss_pred             ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCC
Q 005235          537 KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSS  613 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~  613 (707)
                      +..+.+.+++|||... .+++++ ..++-||.-..+.++..+-+|.+.|+.+.|+++|+.|++|+. |-.|..||++...
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence            3367889999999665 788888 889999998899999999999999999999999999999975 6689999999887


Q ss_pred             cceEEeecCCC-CEEEEEE--cCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235          614 KPYRVLKCHPK-DITNVAF--HRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ  690 (707)
Q Consensus       614 ~~~~~l~~h~~-~I~~vaf--spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg  690 (707)
                      .++..|..|.. .=..|.|  .|.+++||+|+.||.|++||...+++        ++..+..|...    |+.++++|--
T Consensus       285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--------~~sv~~~~sd~----vNgvslnP~m  352 (406)
T KOG2919|consen  285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--------EVSVTGNYSDT----VNGVSLNPIM  352 (406)
T ss_pred             chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--------ccccccccccc----ccceecCccc
Confidence            88888888865 2233444  68899999999999999997764432        35566677777    9999999999


Q ss_pred             CEEEEEeCC
Q 005235          691 PWLFTAGAD  699 (707)
Q Consensus       691 ~~L~s~g~D  699 (707)
                      ++++|++..
T Consensus       353 pilatssGq  361 (406)
T KOG2919|consen  353 PILATSSGQ  361 (406)
T ss_pred             ceeeeccCc
Confidence            999988753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.83  E-value=3.9e-19  Score=180.83  Aligned_cols=261  Identities=18%  Similarity=0.183  Sum_probs=184.6

Q ss_pred             CCcEEEEEEccCCCccEEEEE--eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccC
Q 005235          417 GEAIQYVAWNPLPELPVLAVS--VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF  494 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s--~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~  494 (707)
                      .+.++.+.-++-++ ..++++  ..|.|.||++......+..                 .+. .+-+.....+..+.+|.
T Consensus       151 ~g~~NRvr~~~~~~-~~~~aswse~G~V~Vw~l~~~l~~l~~-----------------~~~-~~~~s~~~Pl~t~~ghk  211 (440)
T KOG0302|consen  151 YGGINRVRVSRLGN-EVLCASWSENGRVQVWDLAPHLNALSE-----------------PGL-EVKDSEFRPLFTFNGHK  211 (440)
T ss_pred             ccccceeeecccCC-cceeeeecccCcEEEEEchhhhhhhcC-----------------ccc-cccccccCceEEecccC
Confidence            56666666666653 334443  4578999997643221110                 000 00011112222356888


Q ss_pred             CCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCceee--eee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECC
Q 005235          495 KMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSHR--IPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLL  568 (707)
Q Consensus       495 ~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~  568 (707)
                      ..=..++|||- ...|++|..-+   .|++|...++.-..  .+| .|...|-.++|+|... .|++|+ |++|+|||++
T Consensus       212 ~EGy~LdWSp~~~g~LlsGDc~~---~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiR  288 (440)
T KOG0302|consen  212 GEGYGLDWSPIKTGRLLSGDCVK---GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIR  288 (440)
T ss_pred             ccceeeecccccccccccCcccc---ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEec
Confidence            88899999993 22356555444   89999998876543  677 9999999999999754 566666 9999999999


Q ss_pred             CC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC--CCcceEEeecCCCCEEEEEEcCCC-CEEEEEe
Q 005235          569 KQ---RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL--SSKPYRVLKCHPKDITNVAFHRSY-PLFASCS  642 (707)
Q Consensus       569 ~~---~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~--~~~~~~~l~~h~~~I~~vafspdg-~llaSgs  642 (707)
                      .+   .++.+ +.|.+.|+.|.|+..-.+||+|+.||++.|||++.  .++|+.+++.|..+|++|.|||.. ..|++++
T Consensus       289 s~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg  367 (440)
T KOG0302|consen  289 SGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG  367 (440)
T ss_pred             CCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc
Confidence            87   34443 78888999999998888999999999999999986  347899999999999999999954 5888899


Q ss_pred             CCCcEEEEecccccCCCC----CC---cccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcE
Q 005235          643 DDCTAYVFHGMVYSDLNQ----NP---LIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVI  702 (707)
Q Consensus       643 ~Dg~I~Vwd~~~~~Dl~~----~~---~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~I  702 (707)
                      .|..|.|||+.+-.|...    ..   .-.|-+.|.-|.+.  .-|..+.||++-+ +|++.+.||--
T Consensus       368 ~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ--ke~KevhWH~QiPG~lvsTa~dGfn  433 (440)
T KOG0302|consen  368 EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ--KEVKEVHWHRQIPGLLVSTAIDGFN  433 (440)
T ss_pred             CCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch--hHhhhheeccCCCCeEEEeccccee
Confidence            999999999876544111    10   01233445555332  2288999999877 77888888843

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=4.8e-19  Score=185.06  Aligned_cols=272  Identities=14%  Similarity=0.176  Sum_probs=207.4

Q ss_pred             cEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEE--eCCeEEEEECCCCCchh------cccccceee-ecc
Q 005235          399 TVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVS--VGQDVLILNTGLGNEEE------QRRVKDLLH-VET  466 (707)
Q Consensus       399 tVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s--~d~~V~lwd~~~~~~~~------~~~~~~v~~-~~~  466 (707)
                      +++|||+..-...-.+.+   .-.+.++.|+...  .|++++  .|..|++|.-......+      .+....+++ ..+
T Consensus        13 ~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n--~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~   90 (673)
T KOG4378|consen   13 KTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN--FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ   90 (673)
T ss_pred             ceEEeecccccCccccccCCCCCcceeeeccccc--eEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc
Confidence            599999876544333333   4559999999887  355554  45567788643321111      111111221 122


Q ss_pred             c--ccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCC
Q 005235          467 P--TAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGL  541 (707)
Q Consensus       467 ~--~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~  541 (707)
                      +  +++++..+.|.+|++..+.... +.+|.+.|++|.++....|||+++..|   .|.|+.+.++... .+|  .....
T Consensus        91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG---diiih~~~t~~~t-t~f~~~sgqs  166 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG---DIIIHGTKTKQKT-TTFTIDSGQS  166 (673)
T ss_pred             ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC---cEEEEecccCccc-cceecCCCCe
Confidence            2  7788999999999999665543 778999999999999999999999888   9999999999887 888  33456


Q ss_pred             eEEEEEeCCCCEEEE-Ee-CCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceE
Q 005235          542 PVSSVFHPTRSIFFV-ST-KKNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYR  617 (707)
Q Consensus       542 V~~v~fspd~~~l~v-~s-dg~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~  617 (707)
                      |.-+.|||..+++++ ++ +|.|.+||+....+... ...|..+...|+|+|.. .+|++.++|.+|.+||.... +...
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~  245 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTD  245 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccc
Confidence            668999999888765 44 79999999988766554 45688889999999977 46678899999999999854 5566


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235          618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ  690 (707)
Q Consensus       618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg  690 (707)
                      .+. ...+..+|+|+++|.+|+.|+..|.|..||+      ...+  .|+.++..|...    |++++|-|.-
T Consensus       246 ~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~------R~~k--~Pv~v~sah~~s----Vt~vafq~s~  305 (673)
T KOG4378|consen  246 RLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDM------RSTK--APVAVRSAHDAS----VTRVAFQPSP  305 (673)
T ss_pred             eee-ecCCcceeeecCCceEEEeecCCceEEEEec------ccCC--CCceEeeecccc----eeEEEeeecc
Confidence            665 3578999999999999999999999999954      4433  379999999988    9999998753

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.83  E-value=1.5e-18  Score=171.43  Aligned_cols=296  Identities=14%  Similarity=0.205  Sum_probs=211.4

Q ss_pred             eeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCe------------EEEEEec
Q 005235          349 RCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGR------------CLRVLEI  416 (707)
Q Consensus       349 rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~------------~l~~l~~  416 (707)
                      |.|.|.|+++..-.+         |.--+...|+--++.+.++++|+.||.|.|||++...            |+-.-++
T Consensus        26 Ril~L~Ln~d~d~~r---------~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h   96 (397)
T KOG4283|consen   26 RILSLQLNNDKDFVR---------PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQH   96 (397)
T ss_pred             hhheeeccCCcceec---------cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccC
Confidence            557888887753221         1222333444445778899999999999999997532            2111111


Q ss_pred             ----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEec
Q 005235          417 ----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLR  492 (707)
Q Consensus       417 ----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~  492 (707)
                          .-.|..+.|-|-....+.+++.|.++++||..+...                                   .....
T Consensus        97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~-----------------------------------a~~F~  141 (397)
T KOG4283|consen   97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE-----------------------------------AVDFK  141 (397)
T ss_pred             CccceeeeeeeEEeeecCceeecccccceEEEeeccccee-----------------------------------eEEee
Confidence                457889999886544677777899999999766421                                   12335


Q ss_pred             cCCCeEEEEEcCC---CCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEE-EEe-CCeEEEEE
Q 005235          493 HFKMVSSVEWHRR---GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFF-VST-KKNIRVYD  566 (707)
Q Consensus       493 h~~~V~~v~~sp~---g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~-v~s-dg~I~iwD  566 (707)
                      ..+.|.+-+|+|-   ..++|+|..+-   .|++-|+..+... ..+ +|.+.|.+|.|+|...+++ +|+ ||.|++||
T Consensus       142 me~~VYshamSp~a~sHcLiA~gtr~~---~VrLCDi~SGs~s-H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWD  217 (397)
T KOG4283|consen  142 MEGKVYSHAMSPMAMSHCLIAAGTRDV---QVRLCDIASGSFS-HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWD  217 (397)
T ss_pred             cCceeehhhcChhhhcceEEEEecCCC---cEEEEeccCCcce-eeeccccCceEEEEeccCceeEEEecCCCceEEEEE
Confidence            5677777788773   34677777766   9999999999988 888 9999999999999988865 455 99999999


Q ss_pred             CCCC-eEEEEEe--------------CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee--cCCCCEEEE
Q 005235          567 LLKQ-RLIKKLE--------------TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK--CHPKDITNV  629 (707)
Q Consensus       567 l~~~-~~~~~l~--------------~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h~~~I~~v  629 (707)
                      ++.- .+...+.              .|.+.+.+++|+.+|.++++.+.|.++++|++..+...++.+-  .|... .++
T Consensus       218 iRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~  296 (397)
T KOG4283|consen  218 IRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSF  296 (397)
T ss_pred             eecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc-ccc
Confidence            9853 3333332              4556799999999999999999999999999987753332221  12111 112


Q ss_pred             EE---cCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          630 AF---HRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       630 af---spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      ++   +-+...|+---.++++.++.      +..+..   +..+.+|...    |.+.++-|+-+.++++..|+.|..|.
T Consensus       297 ~~~~~~~~s~vfv~~p~~~~lall~------~~sgs~---ir~l~~h~k~----i~c~~~~~~fq~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  297 AVHIQSMDSDVFVLFPNDGSLALLN------LLEGSF---VRRLSTHLKR----INCAAYRPDFEQCFTGDMNGNIYMWS  363 (397)
T ss_pred             eEEEeecccceEEEEecCCeEEEEE------ccCceE---EEeeecccce----eeEEeecCchhhhhccccCCcccccc
Confidence            22   33444555555668888884      334433   7788899665    99999999999999999999999984

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=9.7e-19  Score=174.32  Aligned_cols=251  Identities=15%  Similarity=0.167  Sum_probs=185.2

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|++|+|+.|| ..|++++.|+.|+||++......  .|                           ...... -.-+.
T Consensus        86 ~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~--eH---------------------------r~~R~n-ve~dh  134 (420)
T KOG2096|consen   86 KKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENK--EH---------------------------RCIRQN-VEYDH  134 (420)
T ss_pred             CCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhh--hh---------------------------hHhhcc-ccCCC
Confidence            7899999999999 58999999999999998764221  00                           000010 11235


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee----------eee--ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR----------IPF--KLHGLPVSSVFHPTRSIFFVST-KKNIR  563 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~----------~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~  563 (707)
                      .+.|.|+||..-+++....|  .++++|-+.+...-.          ..|  .|.-.+..+-...++.+|++++ |..|.
T Consensus       135 pT~V~FapDc~s~vv~~~~g--~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~  212 (420)
T KOG2096|consen  135 PTRVVFAPDCKSVVVSVKRG--NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKIC  212 (420)
T ss_pred             ceEEEECCCcceEEEEEccC--CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEE
Confidence            67899999998887777655  489999876533211          123  4566777888888899999998 99999


Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-------cceEEeecCCCCEEEEEEcCCCC
Q 005235          564 VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-------KPYRVLKCHPKDITNVAFHRSYP  636 (707)
Q Consensus       564 iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-------~~~~~l~~h~~~I~~vafspdg~  636 (707)
                      +|++. |+.+..+......-+..++||+|++|++++.---|++|.+--..       ..+..|++|..+|..++||++..
T Consensus       213 lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~  291 (420)
T KOG2096|consen  213 LWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST  291 (420)
T ss_pred             EEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence            99998 88888888777777888999999999999999999999864221       23457889999999999999999


Q ss_pred             EEEEEeCCCcEEEEecccccCCCCCCcccceEEee--CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          637 LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR--GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       637 llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~--gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .+++.|.||+++|||..+.....+.+.+  +++..  -|..  +..-..++.+|.|..|+.+. ...+++++
T Consensus       292 r~vtvSkDG~wriwdtdVrY~~~qDpk~--Lk~g~~pl~aa--g~~p~RL~lsP~g~~lA~s~-gs~l~~~~  358 (420)
T KOG2096|consen  292 RAVTVSKDGKWRIWDTDVRYEAGQDPKI--LKEGSAPLHAA--GSEPVRLELSPSGDSLAVSF-GSDLKVFA  358 (420)
T ss_pred             eeEEEecCCcEEEeeccceEecCCCchH--hhcCCcchhhc--CCCceEEEeCCCCcEEEeec-CCceEEEE
Confidence            9999999999999998775555555543  33321  1111  11144899999999886554 34566653

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.2e-20  Score=210.54  Aligned_cols=268  Identities=18%  Similarity=0.277  Sum_probs=204.0

Q ss_pred             eCCCcEEEEeCC--CC----eEEEEEecCCcEEEEEEccCCCcc---EEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          395 STDGTVRIWEVE--SG----RCLRVLEIGEAIQYVAWNPLPELP---VLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       395 s~DgtVrIWd~~--tg----~~l~~l~~~~~V~~v~~spdg~~~---lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      |.+.++-||.+.  +.    +.+..+......+.++|++.+...   |+.+..||.|.+|++....   ....       
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~---~~~~-------  105 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII---ANAS-------  105 (1049)
T ss_pred             ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhc---cCcc-------
Confidence            456667777654  22    344555557889999999988542   5666688999999975420   0000       


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeee---ccCCC
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGL  541 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~  541 (707)
                                        ...+.....|.+.|..+.|++.+. .||+|+.+|   .|.|||+.+-... ..+   ...+.
T Consensus       106 ------------------~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g---eI~iWDlnn~~tP-~~~~~~~~~~e  163 (1049)
T KOG0307|consen  106 ------------------EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG---EILIWDLNKPETP-FTPGSQAPPSE  163 (1049)
T ss_pred             ------------------hHHHhhhcccCCceeeeeccccCCceeeccCCCC---cEEEeccCCcCCC-CCCCCCCCccc
Confidence                              001122457999999999999654 999999988   9999999986544 333   34678


Q ss_pred             eEEEEEeCCCCE-EEEEe-CCeEEEEECCCCeEEEEEeCCCC--CeEEEEEcCCC-CEEEEEECCC---cEEEEECCCCC
Q 005235          542 PVSSVFHPTRSI-FFVST-KKNIRVYDLLKQRLIKKLETGLK--EVSSIAIHPAG-DNLIVGSREG---KLCWFDMDLSS  613 (707)
Q Consensus       542 V~~v~fspd~~~-l~v~s-dg~I~iwDl~~~~~~~~l~~~~~--~I~sl~~spdg-~~L~sGs~Dg---~I~vwDl~~~~  613 (707)
                      |.+++|+..-.+ |++++ +|.+.|||++..+.+-.+..+.+  .++.++|||++ ..|++++.|.   .|.+||++...
T Consensus       164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as  243 (1049)
T KOG0307|consen  164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS  243 (1049)
T ss_pred             ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence            999999886555 45555 78999999999888777765543  47899999997 5566676654   48999999888


Q ss_pred             cceEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-
Q 005235          614 KPYRVLKCHPKDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-  691 (707)
Q Consensus       614 ~~~~~l~~h~~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-  691 (707)
                      .+++++++|...|.++.|++.+ .+|+|++.|+.|.+|+.      .++..   +..+......    +..+.|+|..+ 
T Consensus       244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~------~tgEv---l~~~p~~~nW----~fdv~w~pr~P~  310 (1049)
T KOG0307|consen  244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNP------NTGEV---LGELPAQGNW----CFDVQWCPRNPS  310 (1049)
T ss_pred             CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecC------CCceE---eeecCCCCcc----eeeeeecCCCcc
Confidence            9999999999999999999977 79999999999999954      44433   5666665555    99999999999 


Q ss_pred             EEEEEeCCCcEEEEeC
Q 005235          692 WLFTAGADSVIRLYCH  707 (707)
Q Consensus       692 ~L~s~g~Dg~IrlWdl  707 (707)
                      .++.++-||.|-|++|
T Consensus       311 ~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  311 VMAAASFDGKISIYSL  326 (1049)
T ss_pred             hhhhheeccceeeeee
Confidence            6788899999999975

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=9.6e-19  Score=181.47  Aligned_cols=224  Identities=18%  Similarity=0.245  Sum_probs=171.5

Q ss_pred             ccccCCCCcEEEEecCCc---cce-------------------EEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEE
Q 005235          468 TAPDDNMASIVSWLQHDK---LDG-------------------IRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMH  524 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~---~~~-------------------~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iw  524 (707)
                      +|.|+.+..|.+|++.-.   ..+                   ...+|+..|..++|+.. .+.||+|+.|.   +|.+|
T Consensus       195 vAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~---TV~lW  271 (463)
T KOG0270|consen  195 VAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK---TVKLW  271 (463)
T ss_pred             EEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc---eEEEE
Confidence            677888888999987411   000                   12368889999999875 46789999988   99999


Q ss_pred             ECCCCceeeeee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCC-CEEEEEE
Q 005235          525 QLSKKLSHRIPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAG-DNLIVGS  599 (707)
Q Consensus       525 dl~~~~~~~~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg-~~L~sGs  599 (707)
                      |+.++++. ..+ .|.+.|+++.|||..+ +|++|+ |++|.++|++.. ..-+.++ -.+.|-.++|+|.. ..+++++
T Consensus       272 D~~~g~p~-~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  272 DVDTGKPK-SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EcCCCCcc-eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEec
Confidence            99999998 888 7899999999999765 566677 999999999842 2222222 23568999999876 5677888


Q ss_pred             CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCC
Q 005235          600 REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG  678 (707)
Q Consensus       600 ~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~  678 (707)
                      .||+|+.+|++..++++.++++|...|.++++++.-+ +++++|.|++|++|++...+     +.     ....|.-. .
T Consensus       350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-----~~-----~v~~~~~~-~  418 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-----PK-----SVKEHSFK-L  418 (463)
T ss_pred             CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC-----Cc-----cccccccc-c
Confidence            9999999999998899999999999999999998766 88999999999999764321     11     12223221 0


Q ss_pred             CCeeEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 005235          679 RGVMDCKFHPRQP-WLFTAGADSVIRLYCH  707 (707)
Q Consensus       679 ~gV~~l~fspdg~-~L~s~g~Dg~IrlWdl  707 (707)
                      ....|.++.|+-+ +|+.||..+.++|||+
T Consensus       419 ~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  419 GRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             cceeecccCCCcceEEEecCccceEEEeec
Confidence            1156677888777 4677888888999985

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.2e-18  Score=192.28  Aligned_cols=239  Identities=16%  Similarity=0.143  Sum_probs=192.4

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ....+.|+|.|+|+ .|++++.++.|++|+........                                 ..+..+...
T Consensus        13 t~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P---------------------------------~ti~~~g~~   58 (933)
T KOG1274|consen   13 TGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP---------------------------------ETIDISGEL   58 (933)
T ss_pred             cCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC---------------------------------chhhccCce
Confidence            45578999999996 88899999999999965531100                                 001115666


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~  574 (707)
                      |.+++.  .+++|++++.++   +|.+|.+..+... ..+ ...-++.+++|+.+|.+++.|+ |-.|++.++.+....+
T Consensus        59 v~~ia~--~s~~f~~~s~~~---tv~~y~fps~~~~-~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~  132 (933)
T KOG1274|consen   59 VSSIAC--YSNHFLTGSEQN---TVLRYKFPSGEED-TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK  132 (933)
T ss_pred             eEEEee--cccceEEeeccc---eEEEeeCCCCCcc-ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe
Confidence            777765  456999999988   9999999988876 555 7788999999999999999998 7899999999999999


Q ss_pred             EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--------CCCEEEEEEcCCCCEEEEEeCCCc
Q 005235          575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--------PKDITNVAFHRSYPLFASCSDDCT  646 (707)
Q Consensus       575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--------~~~I~~vafspdg~llaSgs~Dg~  646 (707)
                      .+.+|..+|.+|.|+|.|.+||+.+.||.|++||++.+ .+.+++.+-        ...+..++|||++..||..+.|+.
T Consensus       133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~  211 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT  211 (933)
T ss_pred             eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence            99999999999999999999999999999999999976 555555422        345778999999888888889999


Q ss_pred             EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |++|+...+.         +...|+.....  .++.+++|+|.|.|||+++.||.|.|||.
T Consensus       212 Vkvy~r~~we---------~~f~Lr~~~~s--s~~~~~~wsPnG~YiAAs~~~g~I~vWnv  261 (933)
T KOG1274|consen  212 VKVYSRKGWE---------LQFKLRDKLSS--SKFSDLQWSPNGKYIAASTLDGQILVWNV  261 (933)
T ss_pred             EEEEccCCce---------eheeecccccc--cceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence            9999544332         23444432221  23999999999999999999999999984

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1e-18  Score=168.79  Aligned_cols=229  Identities=19%  Similarity=0.230  Sum_probs=180.3

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCC---eEEEEEec-CCcEEEEEEcc--CCCccEEEEEeCCeEEEEECCCCCchhcccccc
Q 005235          387 ACYLEYKGSTDGTVRIWEVESG---RCLRVLEI-GEAIQYVAWNP--LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg---~~l~~l~~-~~~V~~v~~sp--dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      .+..|+|+|.|++|+|+.+..+   +.+.++.+ .++|..++|..  -| ..|++++.|+.|.||.-..+.         
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~---------   91 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGR---------   91 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCc---------
Confidence            4568999999999999999864   45677777 89999999976  45 366777789999999966551         


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCC-c-eeeeee
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKK-L-SHRIPF  536 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~-~-~~~~~~  536 (707)
                                         |.    +......|...|++|+|.|.  |-.|++++.||   .|.|.+.... . ......
T Consensus        92 -------------------w~----k~~e~~~h~~SVNsV~wapheygl~LacasSDG---~vsvl~~~~~g~w~t~ki~  145 (299)
T KOG1332|consen   92 -------------------WT----KAYEHAAHSASVNSVAWAPHEYGLLLACASSDG---KVSVLTYDSSGGWTTSKIV  145 (299)
T ss_pred             -------------------hh----hhhhhhhhcccceeecccccccceEEEEeeCCC---cEEEEEEcCCCCccchhhh
Confidence                               11    11124579999999999874  67899999999   8888887655 2 111222


Q ss_pred             -ccCCCeEEEEEeCC---C-----------CEEEEEe-CCeEEEEECCCC--eEEEEEeCCCCCeEEEEEcCCC----CE
Q 005235          537 -KLHGLPVSSVFHPT---R-----------SIFFVST-KKNIRVYDLLKQ--RLIKKLETGLKEVSSIAIHPAG----DN  594 (707)
Q Consensus       537 -~~~~~V~~v~fspd---~-----------~~l~v~s-dg~I~iwDl~~~--~~~~~l~~~~~~I~sl~~spdg----~~  594 (707)
                       .|.-.|++++|.|.   |           +.|++|+ |+.|+||+...+  .+-++|.+|..+|..++|.|.-    .+
T Consensus       146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~  225 (299)
T KOG1332|consen  146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST  225 (299)
T ss_pred             hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence             88899999999986   4           3477777 999999998875  4456689999999999999974    57


Q ss_pred             EEEEECCCcEEEEECCCCCcc--eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          595 LIVGSREGKLCWFDMDLSSKP--YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       595 L~sGs~Dg~I~vwDl~~~~~~--~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      ||++|.||+|.||-.+....+  .+.+......+..+.||..|++|+.++.|+.|.+|.
T Consensus       226 iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  226 IASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             eEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            999999999999987643222  233444567899999999999999999999999994

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.82  E-value=1.4e-19  Score=183.25  Aligned_cols=234  Identities=16%  Similarity=0.222  Sum_probs=189.5

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|.|++=+|..-..+++++.||.|+|||+....+                                  ...+..|.+.
T Consensus        66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~----------------------------------~~~f~AH~G~  111 (433)
T KOG0268|consen   66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC----------------------------------IRTFKAHEGL  111 (433)
T ss_pred             ccccchhhcCcchhhhhhccccCceEEEEehhhhhh----------------------------------hheeecccCc
Confidence            467889999998744688888999999998765321                                  1246689999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l  576 (707)
                      |..|+++.  ..+++++.|.   +|+.|-+... .. .++...+.+..+.-+..+..++++ ...|-|||..-..++.++
T Consensus       112 V~Gi~v~~--~~~~tvgdDK---tvK~wk~~~~-p~-~tilg~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R~~Pv~sm  183 (433)
T KOG0268|consen  112 VRGICVTQ--TSFFTVGDDK---TVKQWKIDGP-PL-HTILGKSVYLGIDHHRKNSVFATC-GEQIDIWDEQRDNPVSSM  183 (433)
T ss_pred             eeeEEecc--cceEEecCCc---ceeeeeccCC-cc-eeeecccccccccccccccccccc-CceeeecccccCCcccee
Confidence            99999987  6788888887   9999998774 33 566667777777777666666655 456999999988999999


Q ss_pred             eCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q 005235          577 ETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVY  655 (707)
Q Consensus       577 ~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~  655 (707)
                      .-+...|.++.|+|-.. .|++|..|+.|.+||++.+ .|++.+.- ...-+.++|+|.+-.|++|+.|..++.||++..
T Consensus       184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~-~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l  261 (433)
T KOG0268|consen  184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA-SPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL  261 (433)
T ss_pred             ecCCCceeEEecCCCcchheeeeccCCceEEEecccC-Cccceeee-eccccceecCccccceeeccccccceehhhhhh
Confidence            99989999999999874 5666779999999999987 66655542 344578999998889999999999999976522


Q ss_pred             cCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          656 SDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       656 ~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                              ..|+....+|...    |++++|||.|+-++|||.|.+||||.
T Consensus       262 --------~~p~~v~~dhvsA----V~dVdfsptG~EfvsgsyDksIRIf~  300 (433)
T KOG0268|consen  262 --------SRPLNVHKDHVSA----VMDVDFSPTGQEFVSGSYDKSIRIFP  300 (433)
T ss_pred             --------cccchhhccccee----EEEeccCCCcchhccccccceEEEee
Confidence                    2368889999988    99999999999999999999999996

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.1e-17  Score=177.90  Aligned_cols=330  Identities=12%  Similarity=0.083  Sum_probs=226.3

Q ss_pred             ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEe
Q 005235          325 FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWE  404 (707)
Q Consensus       325 ~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd  404 (707)
                      |.+.+...+.........|       +.++.+|..                             ..++.|++||.+.+.+
T Consensus        95 wDl~~lk~~~~~d~~gg~I-------Wsiai~p~~-----------------------------~~l~IgcddGvl~~~s  138 (691)
T KOG2048|consen   95 WDLHTLKQKYNIDSNGGAI-------WSIAINPEN-----------------------------TILAIGCDDGVLYDFS  138 (691)
T ss_pred             EecccCceeEEecCCCcce-------eEEEeCCcc-----------------------------ceEEeecCCceEEEEe
Confidence            4566666666666666665       677777543                             4788999999999999


Q ss_pred             CCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh------ccc----ccceeeeccc----
Q 005235          405 VESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE------QRR----VKDLLHVETP----  467 (707)
Q Consensus       405 ~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~------~~~----~~~v~~~~~~----  467 (707)
                      +..+........   .+.|.+|+|+|++ ..+++|+.||.|++||...+....      ...    .--+.++.|.    
T Consensus       139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t  217 (691)
T KOG2048|consen  139 IGPDKITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST  217 (691)
T ss_pred             cCCceEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc
Confidence            888877654444   6899999999999 468999999999999999886533      111    1123333332    


Q ss_pred             ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee---eee-ccCCCe
Q 005235          468 TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR---IPF-KLHGLP  542 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~---~~~-~~~~~V  542 (707)
                      +++|++.|+|.+||...+.+. ....|.+.|.+++..++++++++++.|+   .|.-+...+.....   ... .|...|
T Consensus       218 I~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~---~ii~~~~~~~~~~wv~~~~r~~h~hdv  294 (691)
T KOG2048|consen  218 IASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP---KIIQYSLTTNKSEWVINSRRDLHAHDV  294 (691)
T ss_pred             EEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC---ceEEEEecCCccceeeeccccCCcccc
Confidence            899999999999999866554 3678999999999999999999999988   88888777664421   122 566677


Q ss_pred             EEEEEeCCCCEEEEEe-CCeEEEE------------------------------------------ECCCC---------
Q 005235          543 VSSVFHPTRSIFFVST-KKNIRVY------------------------------------------DLLKQ---------  570 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s-dg~I~iw------------------------------------------Dl~~~---------  570 (707)
                      .+++..++  .+++|+ |.++.+-                                          -+.+.         
T Consensus       295 rs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~  372 (691)
T KOG2048|consen  295 RSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYI  372 (691)
T ss_pred             eeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChh
Confidence            77776654  333333 4443332                                          22211         


Q ss_pred             eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-----cCCCCEEEEEEcCCCCEEEEEe-CC
Q 005235          571 RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-----CHPKDITNVAFHRSYPLFASCS-DD  644 (707)
Q Consensus       571 ~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-----~h~~~I~~vafspdg~llaSgs-~D  644 (707)
                      .+.+-.......|+|.++||+|+.|+.++- .+++||.+.... .++...     ........+.|+-++..++.++ .+
T Consensus       373 ~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~  450 (691)
T KOG2048|consen  373 HLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNI  450 (691)
T ss_pred             hheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEeccc
Confidence            111111223356899999999999999875 367888887542 222211     2234567889999999888887 77


Q ss_pred             CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          645 CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       645 g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ..+.+++....    +...   +..+...  ....+|..++.+|+|.|||.++.+|.|.+|++
T Consensus       451 ~~le~~el~~p----s~ke---l~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl  504 (691)
T KOG2048|consen  451 FSLEEFELETP----SFKE---LKSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNL  504 (691)
T ss_pred             ceeEEEEecCc----chhh---hhccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEc
Confidence            78888854321    1111   1111111  11234999999999999999999999999986

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=2.3e-18  Score=169.71  Aligned_cols=276  Identities=17%  Similarity=0.236  Sum_probs=196.4

Q ss_pred             CCCcEEEEeCCCC--eEE-EEEec-CCcEEEEEEccCCCccEEEEEeC--------CeEEEEECCCCCchhcccccceee
Q 005235          396 TDGTVRIWEVESG--RCL-RVLEI-GEAIQYVAWNPLPELPVLAVSVG--------QDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       396 ~DgtVrIWd~~tg--~~l-~~l~~-~~~V~~v~~spdg~~~lla~s~d--------~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      .|+.|.+-.+..+  +.. ..|.+ .+.|..++-+|-.. .|++.+..        -.+.||.++.........      
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~-~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~------  110 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQ-RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS------  110 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCC-ceEEEEEeccCCCcceeeEEEEecccccCccccc------
Confidence            3566666655543  222 23333 78999999999874 56666543        134455544321110000      


Q ss_pred             ecccccccCCCCcEEEEecCCccceEE-eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee------
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIR-LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF------  536 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~-~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~------  536 (707)
                                     .|    ..+..+ ..+-+.|.||.|.|++..+++.. +.   .|.+|++.........+      
T Consensus       111 ---------------tl----E~v~~Ldteavg~i~cvew~Pns~klasm~-dn---~i~l~~l~ess~~vaev~ss~s~  167 (370)
T KOG1007|consen  111 ---------------TL----ECVASLDTEAVGKINCVEWEPNSDKLASMD-DN---NIVLWSLDESSKIVAEVLSSESA  167 (370)
T ss_pred             ---------------hh----hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cC---ceEEEEcccCcchheeecccccc
Confidence                           00    000111 13456899999999999999887 33   89999998876621333      


Q ss_pred             ccCCCeEEEEEeC--CCCEEEEEeCCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 005235          537 KLHGLPVSSVFHP--TRSIFFVSTKKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       537 ~~~~~V~~v~fsp--d~~~l~v~sdg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~  612 (707)
                      .+....++-+|+|  ++..+++.+|+++..||+++......+. .|...|..++|+|+-. +|++|+.||.|++||.+..
T Consensus       168 e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  168 EMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             cccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence            2344567778888  7889999999999999999987666654 5777899999999875 5788999999999999998


Q ss_pred             CcceEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeccccc---------CCCC----------CCcc-cceEEee
Q 005235          613 SKPYRVLKCHPKDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYS---------DLNQ----------NPLI-VPLEILR  671 (707)
Q Consensus       613 ~~~~~~l~~h~~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~---------Dl~~----------~~~~-~pl~~l~  671 (707)
                      ..|++.+.+|...|++|.|+|.. +++.+||.|..|.+|.+..-+         |...          +++. ..+.++.
T Consensus       248 k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd  327 (370)
T KOG1007|consen  248 KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD  327 (370)
T ss_pred             CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc
Confidence            89999999999999999999964 588899999999999765222         0000          0110 1245677


Q ss_pred             CCCCCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEE
Q 005235          672 GHTSSNGRGVMDCKFHPRQPWL-FTAGADSVIRLY  705 (707)
Q Consensus       672 gh~~~~~~gV~~l~fspdg~~L-~s~g~Dg~IrlW  705 (707)
                      .|...    |.+++||...||| |+-+.||.+.|=
T Consensus       328 ehEDS----VY~~aWSsadPWiFASLSYDGRviIs  358 (370)
T KOG1007|consen  328 EHEDS----VYALAWSSADPWIFASLSYDGRVIIS  358 (370)
T ss_pred             ccccc----eEEEeeccCCCeeEEEeccCceEEee
Confidence            88888    9999999999997 567999998763

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.81  E-value=1.1e-18  Score=187.63  Aligned_cols=251  Identities=16%  Similarity=0.193  Sum_probs=175.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEE--E-ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-hcccccceeee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRV--L-EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-EQRRVKDLLHV  464 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~--l-~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-~~~~~~~v~~~  464 (707)
                      ..|++++.|.++++||+.+++++..  + .+.+.|.+++|.|.....+++++.||.|.|||+...... +......+...
T Consensus       113 ~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~  192 (720)
T KOG0321|consen  113 SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR  192 (720)
T ss_pred             eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence            4899999999999999999998866  3 338999999999998778888999999999998754310 00000000000


Q ss_pred             ccccc---ccCCCCcEEEEecCCccceEEeccCCCeEE---EEEcCCCCEEEEEeC-CCCccEEEEEECCCCceee----
Q 005235          465 ETPTA---PDDNMASIVSWLQHDKLDGIRLRHFKMVSS---VEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLSHR----  533 (707)
Q Consensus       465 ~~~~~---~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~---v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~----  533 (707)
                       ...+   ..-....+..          -..+...|.+   +.+..|...||+++. |+   .|+|||+++.....    
T Consensus       193 -~n~~ptpskp~~kr~~k----------~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~---~iKVWDLRk~~~~~r~ep  258 (720)
T KOG0321|consen  193 -HNTAPTPSKPLKKRIRK----------WKAASNTIFSSVTVVLFKDESTLASAGAADS---TIKVWDLRKNYTAYRQEP  258 (720)
T ss_pred             -ccCCCCCCchhhccccc----------cccccCceeeeeEEEEEeccceeeeccCCCc---ceEEEeecccccccccCC
Confidence             0000   0000011111          2234445554   555668889998887 66   99999999865431    


Q ss_pred             ---eee-cc---CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC--eEEEEEeCCCCC--eEEEEEcCCCCEEEEEECC
Q 005235          534 ---IPF-KL---HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ--RLIKKLETGLKE--VSSIAIHPAGDNLIVGSRE  601 (707)
Q Consensus       534 ---~~~-~~---~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~--~~~~~l~~~~~~--I~sl~~spdg~~L~sGs~D  601 (707)
                         ..+ .+   .-.+.++.....|.+|++.+ |+.|++||+..-  .++..+.++...  -..-..+|++.+|++|+.|
T Consensus       259 ~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd  338 (720)
T KOG0321|consen  259 RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD  338 (720)
T ss_pred             CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC
Confidence               111 11   23567777788888887765 999999999763  334444333211  1112458999999999999


Q ss_pred             CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235          602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~  653 (707)
                      ...++|.+.....+...+.+|...|++|+|.|..- -+|+|++|.+++||++.
T Consensus       339 ~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  339 EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             cceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence            99999999988888888999999999999988532 56777999999999873

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.81  E-value=3.6e-18  Score=168.67  Aligned_cols=216  Identities=16%  Similarity=0.219  Sum_probs=171.3

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|+++...+...+++++++.||.|.+||+......-.  . .++           ...+.+-     ......+|...
T Consensus        43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s-~li-----------~k~~c~v-----~~~h~~~Hky~  103 (397)
T KOG4283|consen   43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--S-GLI-----------AKHKCIV-----AKQHENGHKYA  103 (397)
T ss_pred             CCccceeeeccccceEEeecCCCccEEEEEeccccchhh--c-cce-----------eheeeec-----cccCCccceee
Confidence            688999999887667899999999999999876532100  0 000           0000000     00013468889


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCC---CEEEEEe-CCeEEEEECCCCe
Q 005235          497 VSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTR---SIFFVST-KKNIRVYDLLKQR  571 (707)
Q Consensus       497 V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~---~~l~v~s-dg~I~iwDl~~~~  571 (707)
                      |.++.|-| |...|.+++-|.   +++|||.++-+.. ..|...+.|.+-+++|-.   .++++|+ +-.|++.|+..|.
T Consensus       104 iss~~WyP~DtGmFtssSFDh---tlKVWDtnTlQ~a-~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs  179 (397)
T KOG4283|consen  104 ISSAIWYPIDTGMFTSSSFDH---TLKVWDTNTLQEA-VDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS  179 (397)
T ss_pred             eeeeEEeeecCceeecccccc---eEEEeecccceee-EEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence            99999988 667888899888   9999999999887 788889999999999843   4566677 7899999999999


Q ss_pred             EEEEEeCCCCCeEEEEEcCCCCE-EEEEECCCcEEEEECCCCCcceEEee--------------cCCCCEEEEEEcCCCC
Q 005235          572 LIKKLETGLKEVSSIAIHPAGDN-LIVGSREGKLCWFDMDLSSKPYRVLK--------------CHPKDITNVAFHRSYP  636 (707)
Q Consensus       572 ~~~~l~~~~~~I~sl~~spdg~~-L~sGs~Dg~I~vwDl~~~~~~~~~l~--------------~h~~~I~~vafspdg~  636 (707)
                      ...+|.+|.+.|.++.|+|...+ |++|+.||.|++||++....++..+.              +|.+.|++++|+.++.
T Consensus       180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~  259 (397)
T KOG4283|consen  180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR  259 (397)
T ss_pred             ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence            99999999999999999999876 58899999999999986544444443              5667899999999999


Q ss_pred             EEEEEeCCCcEEEEecccc
Q 005235          637 LFASCSDDCTAYVFHGMVY  655 (707)
Q Consensus       637 llaSgs~Dg~I~Vwd~~~~  655 (707)
                      ++++++.|..+++|+...+
T Consensus       260 ~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  260 YLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             hhhhccCccceEEeecccC
Confidence            9999999999999986544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=2.4e-18  Score=172.03  Aligned_cols=225  Identities=12%  Similarity=0.155  Sum_probs=176.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEec------CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      .+++++.+.+.-|.+||.-||+....+..      -..-.+++|+|||  ..+.++....|+++|+........      
T Consensus       123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG--eqlfaGykrcirvFdt~RpGr~c~------  194 (406)
T KOG2919|consen  123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG--EQLFAGYKRCIRVFDTSRPGRDCP------  194 (406)
T ss_pred             cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC--CeEeecccceEEEeeccCCCCCCc------
Confidence            35888899999999999999998887776      2456899999999  466678888999999843321100      


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee-ccC
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLH  539 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~  539 (707)
                                       ++..   ...-..+..+.|.|++|||.. ..+++++...   .+-|+.-..+... ..+ +|.
T Consensus       195 -----------------vy~t---~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q---~~giy~~~~~~pl-~llggh~  250 (406)
T KOG2919|consen  195 -----------------VYTT---VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ---RVGIYNDDGRRPL-QLLGGHG  250 (406)
T ss_pred             -----------------chhh---hhcccccccceeeeeeccCCCCcceeeecccc---eeeeEecCCCCce-eeecccC
Confidence                             0000   000022446788999999954 5888888755   8889988887776 666 999


Q ss_pred             CCeEEEEEeCCCCEEEEEe--CCeEEEEECCC-CeEEEEEeCCCC-C--eEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235          540 GLPVSSVFHPTRSIFFVST--KKNIRVYDLLK-QRLIKKLETGLK-E--VSSIAIHPAGDNLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~-~~~~~~l~~~~~-~--I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~  613 (707)
                      +.|+.++|+++|..|++|+  +..|..||++. ..++..|..|.. .  ---+++.|+|++|++|+.||.|++||+....
T Consensus       251 gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  251 GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             CCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence            9999999999999999998  78999999986 456666766654 2  2235668999999999999999999999855


Q ss_pred             cceEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235          614 KPYRVLKCHPKDITNVAFHRSYPLFASCSDD  644 (707)
Q Consensus       614 ~~~~~l~~h~~~I~~vafspdg~llaSgs~D  644 (707)
                      .++..+..|...++.|+++|--+++|+++..
T Consensus       331 n~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  331 NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CcccccccccccccceecCcccceeeeccCc
Confidence            7778888899999999999999999998753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.80  E-value=1.5e-18  Score=176.66  Aligned_cols=204  Identities=19%  Similarity=0.303  Sum_probs=160.1

Q ss_pred             EeccCCCeEEEEEcCCCCE--EEEEeCCCCccEEEEEECCCC----------------ceeeeee-ccCCCeEEEEEeCC
Q 005235          490 RLRHFKMVSSVEWHRRGDY--LSTVMPAGESRAIFMHQLSKK----------------LSHRIPF-KLHGLPVSSVFHPT  550 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~--lat~s~dg~~~~V~Iwdl~~~----------------~~~~~~~-~~~~~V~~v~fspd  550 (707)
                      .+.|.+.++.+.-++-|+-  .|+-+..|   .|.||++...                +.. .+| +|++.-.+++|||-
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G---~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl-~t~~ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENG---RVQVWDLAPHLNALSEPGLEVKDSEFRPL-FTFNGHKGEGYGLDWSPI  222 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccC---cEEEEEchhhhhhhcCccccccccccCce-EEecccCccceeeecccc
Confidence            4577788887777776543  34444444   9999998532                112 445 78888899999994


Q ss_pred             CC-EEEEEe-CCeEEEEECCCCeEE---EEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCC-cceEEeecCC
Q 005235          551 RS-IFFVST-KKNIRVYDLLKQRLI---KKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSS-KPYRVLKCHP  623 (707)
Q Consensus       551 ~~-~l~v~s-dg~I~iwDl~~~~~~---~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~  623 (707)
                      .. .|++|. .+.|++|...++.-.   ..|.+|...|-.|+|||.. ..|++||.||.|+|||++.+. ++--..++|.
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~  302 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN  302 (440)
T ss_pred             cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence            32 255554 688999998886432   3466799999999999976 578999999999999999862 3333448999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcE
Q 005235          624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVI  702 (707)
Q Consensus       624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~I  702 (707)
                      +.|+.|.|+...++||+|++||+++|||      |++.....|+..++-|..+    |++|.|||... .|+++|.|..|
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwD------LR~~~~~~pVA~fk~Hk~p----ItsieW~p~e~s~iaasg~D~Qi  372 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWD------LRQFKSGQPVATFKYHKAP----ITSIEWHPHEDSVIAASGEDNQI  372 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEE------hhhccCCCcceeEEeccCC----eeEEEeccccCceEEeccCCCcE
Confidence            9999999999999999999999999994      5555555789999999998    99999999654 67888999999


Q ss_pred             EEEeC
Q 005235          703 RLYCH  707 (707)
Q Consensus       703 rlWdl  707 (707)
                      .||||
T Consensus       373 tiWDl  377 (440)
T KOG0302|consen  373 TIWDL  377 (440)
T ss_pred             EEEEe
Confidence            99996

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.80  E-value=3.7e-18  Score=185.23  Aligned_cols=215  Identities=13%  Similarity=0.036  Sum_probs=187.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      ..+++|+.|++|.+|...++..+.++.+ .+.|.|++...++  .+++++.|.++++|-.....                
T Consensus        72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~----------------  133 (745)
T KOG0301|consen   72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV----------------  133 (745)
T ss_pred             cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcC--ceEecccccceEEecchhhh----------------
Confidence            4699999999999999999999999888 8999999988888  59999999999999854321                


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                          ..+.+|+..|.++..-|.+ .++|||.|.   +|++|.-  +... .+| +|..-|..++
T Consensus       134 --------------------~~l~gH~asVWAv~~l~e~-~~vTgsaDK---tIklWk~--~~~l-~tf~gHtD~VRgL~  186 (745)
T KOG0301|consen  134 --------------------YSLQGHTASVWAVASLPEN-TYVTGSADK---TIKLWKG--GTLL-KTFSGHTDCVRGLA  186 (745)
T ss_pred             --------------------cccCCcchheeeeeecCCC-cEEeccCcc---eeeeccC--Cchh-hhhccchhheeeeE
Confidence                                1256899999999999988 889999988   9999986  4555 788 9999999999


Q ss_pred             EeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCE
Q 005235          547 FHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI  626 (707)
Q Consensus       547 fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I  626 (707)
                      +-+++.++-++.||.|++|++ ++.++..+.+|...|.+++...++..+++++.|+++++|+..   .+.+.+...+-.|
T Consensus       187 vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPttsi  262 (745)
T KOG0301|consen  187 VLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTSI  262 (745)
T ss_pred             EecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEEEEecCccce
Confidence            999988777777999999999 788999999999999999988888899999999999999987   6677777666689


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          627 TNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       627 ~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      +++.+-++|. +++|+.||.|+||...
T Consensus       263 Wsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  263 WSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEEEEeeCCC-EEEeccCceEEEEEec
Confidence            9999998887 5577789999999654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=2.8e-17  Score=163.62  Aligned_cols=255  Identities=17%  Similarity=0.235  Sum_probs=186.1

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEec-CCcEEEEEEccC--CCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESG----RCLRVLEI-GEAIQYVAWNPL--PELPVLAVSVGQDVLILNTGLGNEEEQR  456 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg----~~l~~l~~-~~~V~~v~~spd--g~~~lla~s~d~~V~lwd~~~~~~~~~~  456 (707)
                      |...+..+++||.|++|+|||....    .|...++. .+.|..|.|.+-  | ..+++++.|+++.||.-....     
T Consensus        21 ~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfG-qvvA~cS~Drtv~iWEE~~~~-----   94 (361)
T KOG2445|consen   21 FDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFG-QVVATCSYDRTVSIWEEQEKS-----   94 (361)
T ss_pred             ecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcccc-ceEEEEecCCceeeeeecccc-----
Confidence            5566779999999999999996432    46666666 899999999764  4 356777889999999842110     


Q ss_pred             cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCC-----
Q 005235          457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKK-----  529 (707)
Q Consensus       457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~-----  529 (707)
                                      .+..-+.|..    ...+....+.|+.|.|.|  -|-.||+++.||   .|+||+.-..     
T Consensus        95 ----------------~~~~~~~Wv~----~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG---~lRIYEA~dp~nLs~  151 (361)
T KOG2445|consen   95 ----------------EEAHGRRWVR----RTTLVDSRSSVTDVKFAPKHLGLKLAAASADG---ILRIYEAPDPMNLSQ  151 (361)
T ss_pred             ----------------cccccceeEE----EEEeecCCcceeEEEecchhcceEEEEeccCc---EEEEEecCCcccccc
Confidence                            1112233421    223556788999999998  577899999999   9999986432     


Q ss_pred             -cee------eeee-ccCCCeEEEEEeCC---CCEEEEEeCC------eEEEEECCCC----eEEEEEeCCCCCeEEEEE
Q 005235          530 -LSH------RIPF-KLHGLPVSSVFHPT---RSIFFVSTKK------NIRVYDLLKQ----RLIKKLETGLKEVSSIAI  588 (707)
Q Consensus       530 -~~~------~~~~-~~~~~V~~v~fspd---~~~l~v~sdg------~I~iwDl~~~----~~~~~l~~~~~~I~sl~~  588 (707)
                       ..+      ..+. .+..+..|+.|+|.   .++|++|++.      .+.||....+    ..+.+|..|..+|+.|+|
T Consensus       152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w  231 (361)
T KOG2445|consen  152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW  231 (361)
T ss_pred             chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence             111      0122 35677889999985   4789998854      8999976543    345567789999999999


Q ss_pred             cCCC----CEEEEEECCCcEEEEECCCCC-------------------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235          589 HPAG----DNLIVGSREGKLCWFDMDLSS-------------------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       589 spdg----~~L~sGs~Dg~I~vwDl~~~~-------------------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg  645 (707)
                      .|+-    ..||+++.|| |+||.+....                   ..+..+..|++.|+.+.|+-.|..|+|.|+||
T Consensus       232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG  310 (361)
T KOG2445|consen  232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG  310 (361)
T ss_pred             ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence            9973    5789999999 9999987310                   23455778999999999999999999999999


Q ss_pred             cEEEEecccccCCCCCCcccceEEeeCCC
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEILRGHT  674 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~  674 (707)
                      .|++|...      -+.+.++...+....
T Consensus       311 ~VRLWkan------y~n~~kC~sv~~~e~  333 (361)
T KOG2445|consen  311 CVRLWKAN------YNNLWKCTSVLKAEG  333 (361)
T ss_pred             eeeehhhh------hhhhheeeeEEeccC
Confidence            99999532      223333455555443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=9.9e-18  Score=167.04  Aligned_cols=243  Identities=15%  Similarity=0.158  Sum_probs=179.8

Q ss_pred             EEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEE
Q 005235          420 IQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS  499 (707)
Q Consensus       420 V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~  499 (707)
                      -.|+.|++-| ..+++++.+|.|.|||+.+....                                  ..+.+|..+|++
T Consensus        26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~ia----------------------------------r~lsaH~~pi~s   70 (405)
T KOG1273|consen   26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIA----------------------------------RMLSAHVRPITS   70 (405)
T ss_pred             cceEEeccCc-ceeeeeccCCcEEEEEccccchh----------------------------------hhhhccccceeE
Confidence            6899999999 47888889999999998775321                                  135589999999


Q ss_pred             EEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEe
Q 005235          500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLE  577 (707)
Q Consensus       500 v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~  577 (707)
                      ++||++|..|+|++.|.   .|.+||+..+... ..+...++|..+.|||.....++++  +..-.+.++...  .+++.
T Consensus        71 l~WS~dgr~LltsS~D~---si~lwDl~~gs~l-~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~L  144 (405)
T KOG1273|consen   71 LCWSRDGRKLLTSSRDW---SIKLWDLLKGSPL-KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVL  144 (405)
T ss_pred             EEecCCCCEeeeecCCc---eeEEEeccCCCce-eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeec
Confidence            99999999999999998   9999999999977 7788899999999999876666655  444445555432  22221


Q ss_pred             CCC------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          578 TGL------KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-KDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       578 ~~~------~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      ...      ...++..|++.|+++++|...|.+.++|..+. +++..++--. ..|.++.|+..|..|+.-+.|..|+.|
T Consensus       145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~y  223 (405)
T KOG1273|consen  145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTY  223 (405)
T ss_pred             cCCCccccccccccccccCCCCEEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEE
Confidence            111      11234468999999999999999999999987 7777777555 789999999999999999999999999


Q ss_pred             ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEe
Q 005235          651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA-DSVIRLYC  706 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~-Dg~IrlWd  706 (707)
                      ++....+........|...+..--  +...-.+++|+.+|.+++.+++ -..++||.
T Consensus       224 e~~di~~~~r~~e~e~~~K~qDvV--Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  224 EISDIDDEGRDGEVEPEHKLQDVV--NKLQWKKCCFSGDGEYVCAGSARAHALYIWE  278 (405)
T ss_pred             ehhhhcccCccCCcChhHHHHHHH--hhhhhhheeecCCccEEEeccccceeEEEEe
Confidence            876322221222212222222110  0112567899999999977764 45688884

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.4e-17  Score=173.50  Aligned_cols=243  Identities=12%  Similarity=0.127  Sum_probs=191.3

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|++|.|+|.. ..+++++.|++++||.+......                                .+..+.-...+
T Consensus       213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~--------------------------------~lqS~~l~~fP  259 (514)
T KOG2055|consen  213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNP--------------------------------KLQSIHLEKFP  259 (514)
T ss_pred             cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccCh--------------------------------hheeeeeccCc
Confidence            6789999999998 47899999999999987543111                                11112234678


Q ss_pred             eEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeee-ee-cc-CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235          497 VSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRI-PF-KL-HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR  571 (707)
Q Consensus       497 V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~-~~-~~-~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~  571 (707)
                      |.+.+|+|+|. .+++++...   .+++||+.+.+.... +. ++ ...+.....+|++++|+.++ .|.|.+....+++
T Consensus       260 i~~a~f~p~G~~~i~~s~rrk---y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e  336 (514)
T KOG2055|consen  260 IQKAEFAPNGHSVIFTSGRRK---YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE  336 (514)
T ss_pred             cceeeecCCCceEEEecccce---EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence            99999999999 788888765   999999988776421 12 22 34667888999999999988 8999999999999


Q ss_pred             EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC-CEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK-DITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~-~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      .+.+++-. +.|+.++|+.+|..|++.+.+|.|.+||++.. .++..+....+ .-++++.|+++.+||+||+.|.|.||
T Consensus       337 li~s~Kie-G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIY  414 (514)
T KOG2055|consen  337 LITSFKIE-GVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIY  414 (514)
T ss_pred             hhheeeec-cEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEe
Confidence            99888765 67999999999999999999999999999987 67777764322 23567888999999999999999999


Q ss_pred             ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe--CCCcEEE
Q 005235          651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG--ADSVIRL  704 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g--~Dg~Irl  704 (707)
                      +..   +........|++.+..-+..    |++++|+|+.++||.||  .+..+||
T Consensus       415 d~~---s~~~s~~PkPik~~dNLtt~----Itsl~Fn~d~qiLAiaS~~~knalrL  463 (514)
T KOG2055|consen  415 DGN---SCFASTNPKPIKTVDNLTTA----ITSLQFNHDAQILAIASRVKKNALRL  463 (514)
T ss_pred             ccc---hhhccCCCCchhhhhhhhee----eeeeeeCcchhhhhhhhhccccceEE
Confidence            765   44444455678888776666    99999999999987776  4555655

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.77  E-value=8.7e-18  Score=174.86  Aligned_cols=205  Identities=21%  Similarity=0.279  Sum_probs=164.5

Q ss_pred             EeccCCCeEEEEEcCCCC--EEEEEeCCCCccEEEEEECCCCce---eeeee-ccCCCeEEEEEeCCCC-EEEEEe-CCe
Q 005235          490 RLRHFKMVSSVEWHRRGD--YLSTVMPAGESRAIFMHQLSKKLS---HRIPF-KLHGLPVSSVFHPTRS-IFFVST-KKN  561 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~--~lat~s~dg~~~~V~Iwdl~~~~~---~~~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~  561 (707)
                      ..-+...|++++|||.-+  .+|+|...|   .|-+||+.+...   ....| .|.++|.++.|+|... .+++++ ||+
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G---~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGG---QVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCC---cEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            345789999999999654  667777666   999999953222   11445 8899999999999653 344444 999


Q ss_pred             EEEEECCCCe--EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EE
Q 005235          562 IRVYDLLKQR--LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LF  638 (707)
Q Consensus       562 I~iwDl~~~~--~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-ll  638 (707)
                      ||+-|+.++.  .+..+.....++++++|+.+...+++|..=|.+.+||+++.+..+..++-|...|++|+++|..+ +|
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            9999998763  34444445567899999998888888888789999999998887888999999999999999876 88


Q ss_pred             EEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          639 ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       639 aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      ||||.|++++|||++   .+...+.  |+-....|...    |.++.|||.+-.|+|.+.|..|||||
T Consensus       339 aT~s~D~T~kIWD~R---~l~~K~s--p~lst~~Hrrs----V~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLR---QLRGKAS--PFLSTLPHRRS----VNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             eecccCcceeeeehh---hhcCCCC--cceecccccce----eeeeEEcCCCCceEeeccCCceEEee
Confidence            999999999999877   3433332  34455677776    99999999999999999999999997

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=9.8e-16  Score=164.84  Aligned_cols=271  Identities=11%  Similarity=0.112  Sum_probs=178.9

Q ss_pred             EEEEeCCCcEEEEeCCC-Ce--EEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecc
Q 005235          391 EYKGSTDGTVRIWEVES-GR--CLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       391 l~sgs~DgtVrIWd~~t-g~--~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      +++.+.++.|++|++.+ |+  ++..+...+....++++|+++ .|++++ .++.|.+|++...                
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~~~~~----------------   67 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKR-HLYVGVRPEFRVLSYRIADD----------------   67 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCC-EEEEEECCCCcEEEEEECCC----------------
Confidence            33447799999999974 43  556666567788999999994 455554 4677888876421                


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee---eeeccCCCeE
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR---IPFKLHGLPV  543 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~---~~~~~~~~V~  543 (707)
                              +.+...        ......+....++|+|+|++|++++..  .+.|.+|++.+.....   ..+.+...+.
T Consensus        68 --------g~l~~~--------~~~~~~~~p~~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~  129 (330)
T PRK11028         68 --------GALTFA--------AESPLPGSPTHISTDHQGRFLFSASYN--ANCVSVSPLDKDGIPVAPIQIIEGLEGCH  129 (330)
T ss_pred             --------CceEEe--------eeecCCCCceEEEECCCCCEEEEEEcC--CCeEEEEEECCCCCCCCceeeccCCCccc
Confidence                    111100        011223456789999999999888753  2499999997432110   1223334577


Q ss_pred             EEEEeCCCCEEEEEe--CCeEEEEECCCCeEEE-------EEeCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCC
Q 005235          544 SSVFHPTRSIFFVST--KKNIRVYDLLKQRLIK-------KLETGLKEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSS  613 (707)
Q Consensus       544 ~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~-------~l~~~~~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~  613 (707)
                      +++|+|+++++++++  ++.|.+||+.+...+.       .+..+ .....++|+|+|++|++++. ++.|.+|+++...
T Consensus       130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~  208 (330)
T PRK11028        130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH  208 (330)
T ss_pred             EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence            889999999998876  6999999997632221       12222 34678999999999988876 8999999997421


Q ss_pred             ---cceEEeecC------CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE
Q 005235          614 ---KPYRVLKCH------PKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD  683 (707)
Q Consensus       614 ---~~~~~l~~h------~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~  683 (707)
                         +.+..+..+      ......+.|+|++++|+++. .+++|.+|++...     ......+.......     ....
T Consensus       209 ~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~-----~~~~~~~~~~~~~~-----~p~~  278 (330)
T PRK11028        209 GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED-----GSVLSFEGHQPTET-----QPRG  278 (330)
T ss_pred             CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC-----CCeEEEeEEEeccc-----cCCc
Confidence               223333222      12234689999999888775 4789999965311     11111122222111     2567


Q ss_pred             EEEcCCCCEEEEEeC-CCcEEEEeC
Q 005235          684 CKFHPRQPWLFTAGA-DSVIRLYCH  707 (707)
Q Consensus       684 l~fspdg~~L~s~g~-Dg~IrlWdl  707 (707)
                      ++|+|+|++|++++. +++|.+|++
T Consensus       279 ~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        279 FNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             eEECCCCCEEEEEEccCCcEEEEEE
Confidence            899999999988775 899999963

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.76  E-value=2.1e-15  Score=162.44  Aligned_cols=275  Identities=25%  Similarity=0.370  Sum_probs=205.8

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCe-EEEEEec-CC-cEEEEEE-ccCCCccEEEEEe-CCeEEEEECCCCCchhcccc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGR-CLRVLEI-GE-AIQYVAW-NPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRV  458 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~-~l~~l~~-~~-~V~~v~~-spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~  458 (707)
                      |......++.++.|+.+.+|+...+. .+..+.. .. .+..+.+ ++++...++..+. ++.+.+|++...        
T Consensus        73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------  144 (466)
T COG2319          73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP--------  144 (466)
T ss_pred             ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC--------
Confidence            44555678888899999999998887 6666666 32 6777777 7777312333233 677777776540        


Q ss_pred             cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC-CCCccEEEEEECCCCceeeeee-
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPF-  536 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~~~~-  536 (707)
                                               .........|...|..++|++++.++++++. ++   .+.+|++...... ..+ 
T Consensus       145 -------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~  195 (466)
T COG2319         145 -------------------------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG---TIKLWDLRTGKPL-STLA  195 (466)
T ss_pred             -------------------------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCC---ceEEEEcCCCceE-Eeec
Confidence                                     0122246689999999999999998888875 66   9999999986665 666 


Q ss_pred             ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEE-EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235          537 KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIK-KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~-~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~  613 (707)
                      .|...|.+++|+|++. .+++++ |+.|++||...+..+. .+..|.... ...|+|++.++++++.|+.+++|++....
T Consensus       196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence            7899999999999998 444435 8999999998887777 677776664 33899999999999999999999998764


Q ss_pred             cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE
Q 005235          614 KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL  693 (707)
Q Consensus       614 ~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L  693 (707)
                      ..+..+..|...|.++.|+|++..+++++.|+.+.+|+..      ......... ..+|...    |..+.|.+++..+
T Consensus       275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~  343 (466)
T COG2319         275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE------TGKLLSSLT-LKGHEGP----VSSLSFSPDGSLL  343 (466)
T ss_pred             cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC------CCceEEEee-ecccCCc----eEEEEECCCCCEE
Confidence            4355557789999999999988888889989999999543      333211111 2366655    8999994333566


Q ss_pred             EEE-eCCCcEEEEeC
Q 005235          694 FTA-GADSVIRLYCH  707 (707)
Q Consensus       694 ~s~-g~Dg~IrlWdl  707 (707)
                      +.+ ..|+.+.+|++
T Consensus       344 ~~~~~~d~~~~~~~~  358 (466)
T COG2319         344 VSGGSDDGTIRLWDL  358 (466)
T ss_pred             EEeecCCCcEEeeec
Confidence            665 68899999874

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.76  E-value=8.9e-17  Score=172.09  Aligned_cols=143  Identities=17%  Similarity=0.152  Sum_probs=104.0

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeE--E----EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcc
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRC--L----RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQR  456 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~--l----~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~  456 (707)
                      ....+|++||.|..|+||.+..|-.  +    ..+.+ +-.|.|+.|+|..+ .|++++..++++|||+.+...  .+.+
T Consensus        90 F~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaD-gil~s~a~g~v~i~D~stqk~~~el~~  168 (1012)
T KOG1445|consen   90 FADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTAD-GILASGAHGSVYITDISTQKTAVELSG  168 (1012)
T ss_pred             cchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcC-ceEEeccCceEEEEEcccCceeecccC
Confidence            3346899999999999999985422  2    11222 56789999999875 699999999999999999865  5667


Q ss_pred             cccceeeeccc-----ccccCCCCcEEEEecCCccc--eEEeccCCC-eEEEEEcCCCCEEEEEeCCC-CccEEEEEECC
Q 005235          457 RVKDLLHVETP-----TAPDDNMASIVSWLQHDKLD--GIRLRHFKM-VSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLS  527 (707)
Q Consensus       457 ~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~--~~~~~h~~~-V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~  527 (707)
                      |.+.+.+..|+     +++.+.+..|++|+......  ....+|.+. -..+.|..+-..|++.+-+. ..+.|++||..
T Consensus       169 h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr  248 (1012)
T KOG1445|consen  169 HTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTR  248 (1012)
T ss_pred             CchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeecc
Confidence            88888888887     78889999999999875433  224566543 34567765555666655443 35688899876


Q ss_pred             CC
Q 005235          528 KK  529 (707)
Q Consensus       528 ~~  529 (707)
                      ..
T Consensus       249 ~f  250 (1012)
T KOG1445|consen  249 KF  250 (1012)
T ss_pred             cc
Confidence            54

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.75  E-value=2e-16  Score=164.85  Aligned_cols=270  Identities=14%  Similarity=0.182  Sum_probs=194.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCe----EEEEE-ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          389 YLEYKGSTDGTVRIWEVESGR----CLRVL-EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~----~l~~l-~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      .++++|+.-|.|-+||+.+.+    -+..+ .+.++|.+|.|+|.....+++++.||+|++-|++.........      
T Consensus       201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s------  274 (498)
T KOG4328|consen  201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLS------  274 (498)
T ss_pred             eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhh------
Confidence            589999999999999995322    12222 2278999999999887789999999999999987653221000      


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP  542 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V  542 (707)
                                                ...-...+..+.|+.....++++..-|   ...+||+++.......+ -|...|
T Consensus       275 --------------------------~~~d~~~fs~~d~~~e~~~vl~~~~~G---~f~~iD~R~~~s~~~~~~lh~kKI  325 (498)
T KOG4328|consen  275 --------------------------LDTDNIWFSSLDFSAESRSVLFGDNVG---NFNVIDLRTDGSEYENLRLHKKKI  325 (498)
T ss_pred             --------------------------cCccceeeeeccccCCCccEEEeeccc---ceEEEEeecCCccchhhhhhhccc
Confidence                                      001233456777888777777777666   89999999887753455 677799


Q ss_pred             EEEEEeCCCCE-EEEEe-CCeEEEEECCCC--e--EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC---CCC
Q 005235          543 VSSVFHPTRSI-FFVST-KKNIRVYDLLKQ--R--LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD---LSS  613 (707)
Q Consensus       543 ~~v~fspd~~~-l~v~s-dg~I~iwDl~~~--~--~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~---~~~  613 (707)
                      .+|+++|-.++ |++|+ |++++|||++.-  +  ++-....|...|.+..|||.|-.|++.+.|..|+|||..   ...
T Consensus       326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~  405 (498)
T KOG4328|consen  326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD  405 (498)
T ss_pred             ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence            99999998776 55566 999999999863  1  233445688999999999999889999999999999984   222


Q ss_pred             cceEEeecCCC------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE-EEE
Q 005235          614 KPYRVLKCHPK------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD-CKF  686 (707)
Q Consensus       614 ~~~~~l~~h~~------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~-l~f  686 (707)
                      .+..++. |..      .....+|.|+..+|++|-.-..|-|||..      .++.   +..|.+...   .+|.+ ..|
T Consensus       406 ~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~------~~q~---v~el~~P~~---~tI~~vn~~  472 (498)
T KOG4328|consen  406 EPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN------GGQM---VCELHDPES---STIPSVNEF  472 (498)
T ss_pred             Cccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCC------CCEE---eeeccCccc---cccccceee
Confidence            4444443 322      23456899999999999988889999543      2221   333333322   12443 469


Q ss_pred             cCCCC-EEEEEeCCCcEEEEe
Q 005235          687 HPRQP-WLFTAGADSVIRLYC  706 (707)
Q Consensus       687 spdg~-~L~s~g~Dg~IrlWd  706 (707)
                      ||-+. +++.++..|.|.||.
T Consensus       473 HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  473 HPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             cccccceeccCCccceEEEEe
Confidence            99988 556666788999985

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.8e-16  Score=161.58  Aligned_cols=300  Identities=17%  Similarity=0.154  Sum_probs=214.3

Q ss_pred             cccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCC------Ce
Q 005235          336 VPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVES------GR  409 (707)
Q Consensus       336 v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t------g~  409 (707)
                      -|.|+.-+.+||.-+..|.|+                             .++.+|++|++|..++||++..      .+
T Consensus        45 R~~~qKD~~~H~GCiNAlqFS-----------------------------~N~~~L~SGGDD~~~~~W~~de~~~~k~~K   95 (609)
T KOG4227|consen   45 RPFCQKDVREHTGCINALQFS-----------------------------HNDRFLASGGDDMHGRVWNVDELMVRKTPK   95 (609)
T ss_pred             cchhhhhhhhhccccceeeec-----------------------------cCCeEEeecCCcceeeeechHHHHhhcCCC
Confidence            456667777777666666555                             4567999999999999999863      34


Q ss_pred             EEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc
Q 005235          410 CLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD  487 (707)
Q Consensus       410 ~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~  487 (707)
                      .+.....  .+.|.|++|.... ..+++++.+++|.+-|+.+...                        +.+++      
T Consensus        96 PI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~qs------------------------i~V~~------  144 (609)
T KOG4227|consen   96 PIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQS------------------------IYVAN------  144 (609)
T ss_pred             CceeccCccccceEEEEEccCC-eeEecCCCcceeEeeeccccee------------------------eeeec------
Confidence            4444433  5889999998876 5788999999999998876421                        12210      


Q ss_pred             eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEE-EEe-CCeE
Q 005235          488 GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFF-VST-KKNI  562 (707)
Q Consensus       488 ~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~-v~s-dg~I  562 (707)
                        .....+.|..+..||..+.|++++.++   .|.+||.+.......+|   ........+.|+|-.+.|+ +++ .+.+
T Consensus       145 --~~~~~~~VY~m~~~P~DN~~~~~t~~~---~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~  219 (609)
T KOG4227|consen  145 --ENNNRGDVYHMDQHPTDNTLIVVTRAK---LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGP  219 (609)
T ss_pred             --ccCcccceeecccCCCCceEEEEecCc---eEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCC
Confidence              112345899999999999999999988   99999998776332333   5566788999999876654 555 6889


Q ss_pred             EEEECCCCe-EEE------EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-------CCEEE
Q 005235          563 RVYDLLKQR-LIK------KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-------KDITN  628 (707)
Q Consensus       563 ~iwDl~~~~-~~~------~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-------~~I~~  628 (707)
                      -+||.+.++ .+.      .|......-.++.|+|+|..|++--....-.+||+-+...++..+. |.       ..+.+
T Consensus       220 ~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS  298 (609)
T KOG4227|consen  220 NVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKS  298 (609)
T ss_pred             CceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeee
Confidence            999998753 221      2222122235778999999988766555567888875433333332 32       35778


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecccccCCCCCC--------------cccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235          629 VAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNP--------------LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF  694 (707)
Q Consensus       629 vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~--------------~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~  694 (707)
                      ++|.-+.. +++||++-.|++|.+.-..+.....              .-..+.+|+||...    ++.+.|+|....|+
T Consensus       299 ~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv----~NQVRF~~H~~~l~  373 (609)
T KOG4227|consen  299 MTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSV----PNQVRFSQHNNLLV  373 (609)
T ss_pred             eeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccc----ccceeecCCcceEe
Confidence            88887765 8999999999999765322221110              11246789999998    99999999999999


Q ss_pred             EEeCCCcEEEEe
Q 005235          695 TAGADSVIRLYC  706 (707)
Q Consensus       695 s~g~Dg~IrlWd  706 (707)
                      +.|-...++||.
T Consensus       374 SSGVE~~~KlWS  385 (609)
T KOG4227|consen  374 SSGVENSFKLWS  385 (609)
T ss_pred             ccchhhheeccc
Confidence            999999999995

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=3.3e-16  Score=176.42  Aligned_cols=284  Identities=17%  Similarity=0.208  Sum_probs=197.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec----CCcEEEEEEccCCC-ccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI----GEAIQYVAWNPLPE-LPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~----~~~V~~v~~spdg~-~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      ..++++.+.-.|+|||.+.++++..|..    ...|+.+.+-...+ ..+++++.||.|+||+.-....           
T Consensus      1077 p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~----------- 1145 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW----------- 1145 (1387)
T ss_pred             ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc-----------
Confidence            3566666667899999999999988877    57789998865432 3688889999999998432100           


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCC
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGL  541 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~  541 (707)
                              ..-.-|.-|..-..   ...+..+.-.-+.|.....+|++++.-   +.|+|||..+.... ..+  +....
T Consensus      1146 --------~~~eLVTaw~~Ls~---~~~~~r~~~~v~dWqQ~~G~Ll~tGd~---r~IRIWDa~~E~~~-~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1146 --------KKPELVTAWSSLSD---QLPGARGTGLVVDWQQQSGHLLVTGDV---RSIRIWDAHKEQVV-ADIPYGSSTL 1210 (1387)
T ss_pred             --------CCceeEEeeccccc---cCccCCCCCeeeehhhhCCeEEecCCe---eEEEEEecccceeE-eecccCCCcc
Confidence                    01112333322111   111222222456787766666666643   49999999988776 555  66666


Q ss_pred             eEEEEEeC-CCCEEEEEe-CCeEEEEECCCC---eEEEEEeCCCCC--eEEEEEcCCCC-EEEEEECCCcEEEEECCCC-
Q 005235          542 PVSSVFHP-TRSIFFVST-KKNIRVYDLLKQ---RLIKKLETGLKE--VSSIAIHPAGD-NLIVGSREGKLCWFDMDLS-  612 (707)
Q Consensus       542 V~~v~fsp-d~~~l~v~s-dg~I~iwDl~~~---~~~~~l~~~~~~--I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~-  612 (707)
                      |+++.-+- .|..|++|. ||.||+||.+..   ..+.....|..+  |..+.+.+.|- .|++|+.+|.|++||++.. 
T Consensus      1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred             ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence            77665433 467788877 999999998763   457777888877  99999998774 5999999999999999973 


Q ss_pred             CcceEEeecCC--C-CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          613 SKPYRVLKCHP--K-DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       613 ~~~~~~l~~h~--~-~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      ..-+-+...|.  + .++++..|+..+++|+|+. +.|+||+..      ...+. .++.-.+--+.....+.+++|||.
T Consensus      1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~------G~~l~-~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS------GEQLN-IIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC------hhhhc-ccccCcccccCcCCCcceeeecch
Confidence            22233344443  3 5999999999999999998 999999543      22211 111111111111233899999999


Q ss_pred             CCEEEEEeCCCcEEEEe
Q 005235          690 QPWLFTAGADSVIRLYC  706 (707)
Q Consensus       690 g~~L~s~g~Dg~IrlWd  706 (707)
                      ...||+|+.|.+|.||.
T Consensus      1363 ~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1363 RLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             hHhhhhccCCceEEEee
Confidence            99999999999999985

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.3e-16  Score=160.94  Aligned_cols=277  Identities=13%  Similarity=0.194  Sum_probs=196.3

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      ..++++-..|+|++||..||+.+..++. ...++.+.|... +...+++++.||+|++||+++.....            
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a------------  108 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA------------  108 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh------------
Confidence            5788889999999999999999999998 777888888663 33468899999999999987753321            


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccC-CCeEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeee--ccCCCe
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHF-KMVSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPF--KLHGLP  542 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~-~~V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~--~~~~~V  542 (707)
                                ...|          .++. .+..|++...+++.+++|..-- ..-.|.+||++..+.....+  .|...|
T Consensus       109 ----------~~~~----------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDV  168 (376)
T KOG1188|consen  109 ----------RISW----------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDV  168 (376)
T ss_pred             ----------heec----------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcc
Confidence                      1112          1233 4566777766778888775321 23489999999887732555  899999


Q ss_pred             EEEEEeCCCC-EEEEEe-CCeEEEEECCCC----eEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcc
Q 005235          543 VSSVFHPTRS-IFFVST-KKNIRVYDLLKQ----RLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKP  615 (707)
Q Consensus       543 ~~v~fspd~~-~l~v~s-dg~I~iwDl~~~----~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~  615 (707)
                      +++.|||..+ +|++|+ ||.|.|||+...    .++.++ .+...|.++.|+.++ +.|.+-+......+|++..+. +
T Consensus       169 T~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~  246 (376)
T KOG1188|consen  169 TQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-E  246 (376)
T ss_pred             eeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-h
Confidence            9999999765 566777 999999999754    234444 355679999998877 568888899999999998764 3


Q ss_pred             eEEeecCC------------CCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeC-CCCCCCCCe
Q 005235          616 YRVLKCHP------------KDITNVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRG-HTSSNGRGV  681 (707)
Q Consensus       616 ~~~l~~h~------------~~I~~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~~~~~gV  681 (707)
                      ...+.-..            ..+-.....-+..+++.++. -|...++-+.   +..+.....++..|.| |...    |
T Consensus       247 ~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~---~~~s~~~~~~~a~l~g~~~ei----V  319 (376)
T KOG1188|consen  247 ETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLV---DTSSGSLLTEPAILQGGHEEI----V  319 (376)
T ss_pred             hhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEee---ecccccccCccccccCCcHHH----H
Confidence            22222110            01111111223445555554 5666666433   3344455556777877 5555    8


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          682 MDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       682 ~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .++.|.-.+..|+|||.||.+.+|.
T Consensus       320 R~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  320 RDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             HHHhhhcccceeeccCCCceEEEEe
Confidence            9999998999999999999999995

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.74  E-value=8.2e-17  Score=168.54  Aligned_cols=258  Identities=13%  Similarity=0.089  Sum_probs=193.0

Q ss_pred             cEEEEEeCCeEEEEECCCCCc--h--hcccccceeeeccc------ccccCCCCcEEEEecCCccceE---EeccCCCeE
Q 005235          432 PVLAVSVGQDVLILNTGLGNE--E--EQRRVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGI---RLRHFKMVS  498 (707)
Q Consensus       432 ~lla~s~d~~V~lwd~~~~~~--~--~~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~---~~~h~~~V~  498 (707)
                      .+.+++.+.+++|||+.....  .  .......+.++.|.      ++..+.+..+++|...++...+   .......-.
T Consensus         4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~   83 (673)
T KOG4378|consen    4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAF   83 (673)
T ss_pred             ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHH
Confidence            367788888999999865432  1  11122234455554      4556678889999776552211   112223445


Q ss_pred             EEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE
Q 005235          499 SVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       499 ~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l  576 (707)
                      ||+......|+++|+..+   .|.|||+....+. +.+ .|...|++|.++-...+|++++ .|.|.|..+.++.....|
T Consensus        84 Cv~~~s~S~y~~sgG~~~---~Vkiwdl~~kl~h-r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f  159 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSG---CVKIWDLRAKLIH-RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF  159 (673)
T ss_pred             HHhhhhcceeeeccCcCc---eeeehhhHHHHHh-hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence            666656668999999987   9999999966665 555 8999999999999999999999 699999999998777777


Q ss_pred             eCCC-CCeEEEEEcCCCCE-EEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235          577 ETGL-KEVSSIAIHPAGDN-LIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       577 ~~~~-~~I~sl~~spdg~~-L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~  653 (707)
                      .... ..|.-+.|||..++ |.+++.+|.|.+||+........-...|..+...|+|+|... +|++.+.|..|.+||. 
T Consensus       160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~-  238 (673)
T KOG4378|consen  160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI-  238 (673)
T ss_pred             ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec-
Confidence            6553 44668999998865 566899999999999865333445578999999999999765 8899999999999954 


Q ss_pred             cccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          654 VYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       654 ~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                           .....   ...|.... +    ...++|+++|.+|+.|+..|.|..||+
T Consensus       239 -----~s~~s---~~~l~y~~-P----lstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  239 -----RSQAS---TDRLTYSH-P----LSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             -----ccccc---cceeeecC-C----cceeeecCCceEEEeecCCceEEEEec
Confidence                 33333   33343322 2    889999999999999999999999986

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=1.3e-16  Score=165.85  Aligned_cols=228  Identities=18%  Similarity=0.238  Sum_probs=170.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCe---EEEEEe-------------------cCCcEEEEEEccCCCccEEEEEeCCeEEE
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGR---CLRVLE-------------------IGEAIQYVAWNPLPELPVLAVSVGQDVLI  444 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~---~l~~l~-------------------~~~~V~~v~~spdg~~~lla~s~d~~V~l  444 (707)
                      .++++|.|..|..|.|||+.--.   +..++.                   +.+.|.+|+|+-.-...|++++.|.+|.+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            46799999999999999975211   111111                   14566778887766546666777888888


Q ss_pred             EECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEE
Q 005235          445 LNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFM  523 (707)
Q Consensus       445 wd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~I  523 (707)
                      ||+.++.+.                                  ..+..|.+.|.++.|+| ...+|++|+.|+   +|.+
T Consensus       271 WD~~~g~p~----------------------------------~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~---~V~l  313 (463)
T KOG0270|consen  271 WDVDTGKPK----------------------------------SSITHHGKKVQTLEWHPYEPSVLLSGSYDG---TVAL  313 (463)
T ss_pred             EEcCCCCcc----------------------------------eehhhcCCceeEEEecCCCceEEEeccccc---eEEe
Confidence            887776432                                  13446899999999999 467899999998   9999


Q ss_pred             EECCCCceeeeeeccCCCeEEEEEeCCCCEEE-EEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCC-CEEEEEE
Q 005235          524 HQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF-VST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAG-DNLIVGS  599 (707)
Q Consensus       524 wdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~-v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs  599 (707)
                      .|++........++..+.|-.++|+|.....+ +++ ||+|+-+|++. ++++.+++.|...|++|++++.- .+|++++
T Consensus       314 ~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s  393 (463)
T KOG0270|consen  314 KDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS  393 (463)
T ss_pred             eeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc
Confidence            99986433313347889999999999877654 444 89999999997 49999999999999999998765 5688899


Q ss_pred             CCCcEEEEECCCCCcceEEeecCC---CCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235          600 REGKLCWFDMDLSSKPYRVLKCHP---KDITNVAFHRSYP-LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       600 ~Dg~I~vwDl~~~~~~~~~l~~h~---~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~  653 (707)
                      .|+.|++|++... .+. ....|.   +...|.++.|+-. ++|.|+..+.++|||+.
T Consensus       394 ~d~~Vklw~~~~~-~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  394 TDKVVKLWKFDVD-SPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             ccceEEEEeecCC-CCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence            9999999999754 221 111222   3366777888766 67788888899999543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=1.7e-16  Score=163.31  Aligned_cols=279  Identities=15%  Similarity=0.220  Sum_probs=193.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCe------EE---EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGR------CL---RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV  458 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~------~l---~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~  458 (707)
                      +.++||+.|..|+||-+..+.      .+   ..+.. ...|++|.|+|+|+ .|++++.++.|.+|........ ...+
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~-~~d~  104 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIF-DADT  104 (434)
T ss_pred             cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCc-cccc
Confidence            489999999999999987532      11   12222 78999999999995 5666667789999986531110 0000


Q ss_pred             cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K  537 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~  537 (707)
                                   ..+..-..|-    ....+.+|...|..++|++++.++++++-|.   .+++||+..+... ..+ .
T Consensus       105 -------------e~~~~ke~w~----v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn---s~~l~Dv~~G~l~-~~~~d  163 (434)
T KOG1009|consen  105 -------------EADLNKEKWV----VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN---SVRLWDVHAGQLL-AILDD  163 (434)
T ss_pred             -------------hhhhCccceE----EEEEecccccchhhhhccCCCceeeeeeccc---eEEEEEeccceeE-eeccc
Confidence                         0000011121    0123667999999999999999999999988   9999999999998 777 9


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe-----C--------------CC----CCeEEEEEcCCCC
Q 005235          538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE-----T--------------GL----KEVSSIAIHPAGD  593 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~-----~--------------~~----~~I~sl~~spdg~  593 (707)
                      |..-|+.++|.|-++++++-+ |+..+.+.+...+.++...     .              |.    .....++|+|+|.
T Consensus       164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~  243 (434)
T KOG1009|consen  164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS  243 (434)
T ss_pred             cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence            999999999999999999866 8777777765433222111     0              11    1135578999999


Q ss_pred             EEEEEEC----C-----CcEEEEECCCCCcceEEeecCCCCEEEEEEcCC-----------------CC-EEEEEeCCCc
Q 005235          594 NLIVGSR----E-----GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-----------------YP-LFASCSDDCT  646 (707)
Q Consensus       594 ~L~sGs~----D-----g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd-----------------g~-llaSgs~Dg~  646 (707)
                      +|++.+.    .     +..++|+-..-.+|...+.+...++..+.|+|-                 ++ .||.++ -..
T Consensus       244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~s  322 (434)
T KOG1009|consen  244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNS  322 (434)
T ss_pred             EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cce
Confidence            9987532    2     234677666555778788877788888888762                 12 345554 456


Q ss_pred             EEEEecccccCCCCCCcccceEEee-CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235          647 AYVFHGMVYSDLNQNPLIVPLEILR-GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       647 I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                      |.|||..      +..   |+.... -|-..    |++++|+++|..|+..|.||...+
T Consensus       323 vyvydtq------~~~---P~~~v~nihy~~----iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  323 VYVYDTQ------TLE---PLAVVDNIHYSA----ITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             EEEeccc------ccc---ceEEEeeeeeee----ecceeecCCCcEEEEeccCCceEE
Confidence            9999543      222   233322 24444    999999999999999999997655

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=8.2e-16  Score=171.62  Aligned_cols=268  Identities=16%  Similarity=0.219  Sum_probs=199.3

Q ss_pred             CcEEEEeCCCC-eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCc
Q 005235          398 GTVRIWEVESG-RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMAS  476 (707)
Q Consensus       398 gtVrIWd~~tg-~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~  476 (707)
                      +.+.||++... ..-..+.....|.|++|+|.....++.|+.+|.|.+||+..+.....                     
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------------  280 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---------------------  280 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---------------------
Confidence            47999999865 56667777999999999998866677777899999999876643210                     


Q ss_pred             EEEEecCCccceEEeccCCCeEEEEEcCCC--CEEEEEeCCCCccEEEEEECCCCceee--eee----------ccCCCe
Q 005235          477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRG--DYLSTVMPAGESRAIFMHQLSKKLSHR--IPF----------KLHGLP  542 (707)
Q Consensus       477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g--~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~----------~~~~~V  542 (707)
                             .........|..+|..+.|..+-  .-|++++.||   .|..|+++.-....  ...          .....+
T Consensus       281 -------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG---~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~  350 (555)
T KOG1587|consen  281 -------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG---SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGA  350 (555)
T ss_pred             -------cccccccccCCcCeEEEEEeccCCCCceEEEecCC---cEeeeeccccccchhhcccccccccccccccccce
Confidence                   00111244789999999996543  4599999999   99999887544311  111          123468


Q ss_pred             EEEEEeCCCC-EEEEEe-CCeEEEEECCC---C-----eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          543 VSSVFHPTRS-IFFVST-KKNIRVYDLLK---Q-----RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       543 ~~v~fspd~~-~l~v~s-dg~I~iwDl~~---~-----~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                      +++.|.+..+ .|++|+ +|.|.--+-..   +     +....+..|.+.|.++.++|=+..++..+.|.+|+||.....
T Consensus       351 t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~  430 (555)
T KOG1587|consen  351 TSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI  430 (555)
T ss_pred             eeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC
Confidence            8999998654 577788 68887744322   2     123356678899999999998876666666999999998855


Q ss_pred             CcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235          613 SKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP  691 (707)
Q Consensus       613 ~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~  691 (707)
                      ..|+..+..+...|++++|||..+ +||++..||.|.||      ||..... .|+....-+...    ...+.|++.|+
T Consensus       431 ~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW------DLl~~~~-~Pv~s~~~~~~~----l~~~~~s~~g~  499 (555)
T KOG1587|consen  431 ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW------DLLQDDE-EPVLSQKVCSPA----LTRVRWSPNGK  499 (555)
T ss_pred             CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehh------hhhcccc-CCcccccccccc----cceeecCCCCc
Confidence            578888888888899999999877 78888899999999      5544433 345555444444    77788999999


Q ss_pred             EEEEEeCCCcEEEEeC
Q 005235          692 WLFTAGADSVIRLYCH  707 (707)
Q Consensus       692 ~L~s~g~Dg~IrlWdl  707 (707)
                      .|+.|...|+|.+|+|
T Consensus       500 ~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  500 LLAVGDANGTTHILKL  515 (555)
T ss_pred             EEEEecCCCcEEEEEc
Confidence            9999999999999976

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.73  E-value=3.9e-16  Score=168.00  Aligned_cols=248  Identities=15%  Similarity=0.191  Sum_probs=195.8

Q ss_pred             CcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc----ccccC
Q 005235          398 GTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP----TAPDD  472 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~----~~~~~  472 (707)
                      ..+.|||+..|..+.++++ .+.|.||+|+.||. .+++++.|..|.+|+.......-..|++.+.++.|.    ....+
T Consensus        33 ~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasC  111 (1081)
T KOG1538|consen   33 SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASC  111 (1081)
T ss_pred             CEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhc
Confidence            4699999999999999998 89999999999994 788888999999999888777778899999999987    23333


Q ss_pred             CCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee--eeeccCCCeEEEEEeCC
Q 005235          473 NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR--IPFKLHGLPVSSVFHPT  550 (707)
Q Consensus       473 ~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~~~~~~V~~v~fspd  550 (707)
                      +-....+|+...+.+. .......|.+++|..+|.||+.|-.+|   +|.|-+-.......  ++-+.+.+|.+++|+|.
T Consensus       112 sLsdFglWS~~qK~V~-K~kss~R~~~CsWtnDGqylalG~~nG---TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~  187 (1081)
T KOG1538|consen  112 SLSDFGLWSPEQKSVS-KHKSSSRIICCSWTNDGQYLALGMFNG---TISIRNKNGEEKVKIERPGGSNSPIWSICWNPS  187 (1081)
T ss_pred             chhhccccChhhhhHH-hhhhheeEEEeeecCCCcEEEEeccCc---eEEeecCCCCcceEEeCCCCCCCCceEEEecCC
Confidence            4445677876544332 123356788999999999999999988   99998765544431  11257889999999996


Q ss_pred             C-----CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235          551 R-----SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK  624 (707)
Q Consensus       551 ~-----~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~  624 (707)
                      .     ..+++.. ..++.+|.+. |+.+.+-..-.-...|+.+-++|.+++.|+.|+.+.+|--+ + ..+.++.....
T Consensus       188 sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G-vrLGTvg~~D~  264 (1081)
T KOG1538|consen  188 SGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G-VRLGTVGEQDS  264 (1081)
T ss_pred             CCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C-eEEeeccccce
Confidence            4     3566776 7888888886 44443322222346789999999999999999999999764 3 56677777788


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          625 DITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .|+.|+.+|+++.++.|+.||+|..|++.
T Consensus       265 WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  265 WIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             eEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            99999999999999999999999999753

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.72  E-value=2.9e-16  Score=165.85  Aligned_cols=253  Identities=15%  Similarity=0.107  Sum_probs=196.5

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc-hhcccccce-eeecc-------------cccccCCCCcEEEEe
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE-EEQRRVKDL-LHVET-------------PTAPDDNMASIVSWL  481 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~-~~~~~~~~v-~~~~~-------------~~~~~~~d~~i~iW~  481 (707)
                      ..-|.|+.|+.+.  .++.++.|..+.+|.-.+.+. .+....... ....+             .++..++||.+.+.+
T Consensus        14 ~e~vc~v~w~~~e--ei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   14 SEKVCCVDWSSNE--EIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ceeEEeecccccc--eEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            4456789999887  588888888888776444322 211111111 10000             067778899999988


Q ss_pred             cCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCC
Q 005235          482 QHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKK  560 (707)
Q Consensus       482 ~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg  560 (707)
                      ..+........|.+.|.+-.|+|+|.-|++++.||   .|+||.-+..- . .++ ....+|.|++|.|+..-++.+..+
T Consensus        92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG---~iKiWSrsGML-R-Stl~Q~~~~v~c~~W~p~S~~vl~c~g~  166 (737)
T KOG1524|consen   92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDG---VIKIWSRSGML-R-STVVQNEESIRCARWAPNSNSIVFCQGG  166 (737)
T ss_pred             ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCc---eEEEEeccchH-H-HHHhhcCceeEEEEECCCCCceEEecCC
Confidence            77776666788999999999999999999999999   99999865432 2 444 677899999999999988888888


Q ss_pred             eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235          561 NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS  640 (707)
Q Consensus       561 ~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS  640 (707)
                      ++.|=-+..+..+-....|.+-|.|++|++..+.+++|+.|-+.+|||-. + .++..-..|..+|++|+|+|+ .+++.
T Consensus       167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G-~~Lf~S~~~ey~ITSva~npd-~~~~v  243 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-G-ANLFTSAAEEYAITSVAFNPE-KDYLL  243 (737)
T ss_pred             eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-C-cccccCChhccceeeeeeccc-cceee
Confidence            99999998887777889999999999999999999999999999999986 3 667777889999999999999 77777


Q ss_pred             EeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235          641 CSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       641 gs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                      +|. .+.++=                    ....+.    |..++||+||..+++|.+.|.+.+
T Consensus       244 ~S~-nt~R~~--------------------~p~~GS----ifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  244 WSY-NTARFS--------------------SPRVGS----IFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eee-eeeeec--------------------CCCccc----eEEEEEcCCCceeeccccCceEEE
Confidence            763 223311                    111222    999999999999999998887653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=1.2e-16  Score=156.09  Aligned_cols=256  Identities=14%  Similarity=0.164  Sum_probs=181.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      .+|++|..-|.|.+|.+.+.+.+..++.  ...|+.+.--|++  .+.+-+.|..+.+|++.-+... ..+.-.+.++.|
T Consensus        26 ~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i-~i~Si~~nslgF  102 (323)
T KOG0322|consen   26 ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFI-SIHSIVVNSLGF  102 (323)
T ss_pred             hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcceE-EEeeeecccccc
Confidence            3689999999999999999988888874  7889999999987  6999999999999998764321 112222333333


Q ss_pred             c---ccccCCCC-cEEEEecC---------Ccc-ceE------EeccCCCeEEEEEcC-CCCE--EEEEeCCCCccEEEE
Q 005235          467 P---TAPDDNMA-SIVSWLQH---------DKL-DGI------RLRHFKMVSSVEWHR-RGDY--LSTVMPAGESRAIFM  523 (707)
Q Consensus       467 ~---~~~~~~d~-~i~iW~~~---------~~~-~~~------~~~h~~~V~~v~~sp-~g~~--lat~s~dg~~~~V~I  523 (707)
                      .   +....... ....+.-.         .+. ..+      .....+.+.|..|.. .+.+  +++|..+|   .|.+
T Consensus       103 CrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg---hvv~  179 (323)
T KOG0322|consen  103 CRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG---HVVI  179 (323)
T ss_pred             ccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCC---eEEE
Confidence            3   11111111 11111111         000 011      123456677777533 4443  45556666   9999


Q ss_pred             EECCCCcee---------eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC--e--EEEEEeCCCCCeEEEEE
Q 005235          524 HQLSKKLSH---------RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ--R--LIKKLETGLKEVSSIAI  588 (707)
Q Consensus       524 wdl~~~~~~---------~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~--~--~~~~l~~~~~~I~sl~~  588 (707)
                      ||++++...         ..+. .|..+|.++.|.+....=++++ +..+..|++.-.  .  .-..+......|..+.+
T Consensus       180 wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrI  259 (323)
T KOG0322|consen  180 WDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRI  259 (323)
T ss_pred             EEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEE
Confidence            999987322         0334 6788999999987655555555 778888887643  2  22223333356889999


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      -||++.+|+++.|++|+||..++. .|+..|+.|.+.|++++|||+.+++|++|.|++|-+|+
T Consensus       260 RpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  260 RPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             ccCCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence            999999999999999999999988 89999999999999999999999999999999999994

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.9e-14  Score=161.00  Aligned_cols=308  Identities=15%  Similarity=0.195  Sum_probs=202.6

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEE----------------------------------------------
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQ----------------------------------------------  421 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~----------------------------------------------  421 (707)
                      ..++++++.||+|++||...+..++++.....|.                                              
T Consensus        72 ~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~  151 (792)
T KOG1963|consen   72 ANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS  151 (792)
T ss_pred             ceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence            3578899999999999999988887775533333                                              


Q ss_pred             -------------EEEEccCCCccEEEEEeCCeEEEEECCCCCc------hhcccccceeeeccc-----ccccCCCCcE
Q 005235          422 -------------YVAWNPLPELPVLAVSVGQDVLILNTGLGNE------EEQRRVKDLLHVETP-----TAPDDNMASI  477 (707)
Q Consensus       422 -------------~v~~spdg~~~lla~s~d~~V~lwd~~~~~~------~~~~~~~~v~~~~~~-----~~~~~~d~~i  477 (707)
                                   +|.+++.|  .+.....+..+.+|+......      ....|+..+.+..++     ++++..+|.|
T Consensus       152 ~~~d~~~~~~~~~~I~~~~~g--e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI  229 (792)
T KOG1963|consen  152 AKGDFLKEHQEPKSIVDNNSG--EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRI  229 (792)
T ss_pred             cchhhhhhhcCCccEEEcCCc--eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcE
Confidence                         33334444  344444555566666555321      111222222222232     7888999999


Q ss_pred             EEEecCC-c---c-ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCC
Q 005235          478 VSWLQHD-K---L-DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTR  551 (707)
Q Consensus       478 ~iW~~~~-~---~-~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~  551 (707)
                      .+|.--+ .   . ...+.=|...|.+++|+++|.+|++|+..+   .+.+|.+.++..  .-+ ...++|..+.++||+
T Consensus       230 ~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~---VLv~Wq~~T~~k--qfLPRLgs~I~~i~vS~ds  304 (792)
T KOG1963|consen  230 LVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG---VLVLWQLETGKK--QFLPRLGSPILHIVVSPDS  304 (792)
T ss_pred             EEEeccccccccccceEEEecccccceeEEecCCceEeecccce---EEEEEeecCCCc--ccccccCCeeEEEEEcCCC
Confidence            9997644 1   1 122445888999999999999999999988   999999999983  344 888999999999999


Q ss_pred             CEEEEEe-CCeEEEEECCCCeEEEEEeC---C--------CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceE--
Q 005235          552 SIFFVST-KKNIRVYDLLKQRLIKKLET---G--------LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYR--  617 (707)
Q Consensus       552 ~~l~v~s-dg~I~iwDl~~~~~~~~l~~---~--------~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~--  617 (707)
                      .+.++.. |+.|.+..+.+.....++.+   .        .+-.+.++++|.-+.++..+..|.|.+||+-+....++  
T Consensus       305 ~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~  384 (792)
T KOG1963|consen  305 DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ  384 (792)
T ss_pred             CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence            9888776 99999988755433332221   1        23356677777555666666677777777653221110  


Q ss_pred             -----------------------------------------------------------------EeecCCCCEEEEEEc
Q 005235          618 -----------------------------------------------------------------VLKCHPKDITNVAFH  632 (707)
Q Consensus       618 -----------------------------------------------------------------~l~~h~~~I~~vafs  632 (707)
                                                                                       ....|...+.+.+|.
T Consensus       385 v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~  464 (792)
T KOG1963|consen  385 VCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFL  464 (792)
T ss_pred             EEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEe
Confidence                                                                             112454444444443


Q ss_pred             C-CCC-EEEEEeCCCcEEEEecccccCCCCCCcc-cceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          633 R-SYP-LFASCSDDCTAYVFHGMVYSDLNQNPLI-VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       633 p-dg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~-~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      + ... .+++++.||.++||-+....++...... .|...-.-|...    +.+++|+.||. |+++|.|++|.+||.
T Consensus       465 ~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~----i~a~~fs~dGs-lla~s~~~~Itiwd~  537 (792)
T KOG1963|consen  465 NPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP----ITALCFSQDGS-LLAVSFDDTITIWDY  537 (792)
T ss_pred             cCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc----ccchhhcCCCc-EEEEecCCEEEEecC
Confidence            3 222 7889999999999977544444433322 222222235555    99999999995 667778999999983

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.70  E-value=1.5e-15  Score=152.60  Aligned_cols=268  Identities=13%  Similarity=0.102  Sum_probs=191.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCC---eEEEEEec---CCcEEEEEEccC---CCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          389 YLEYKGSTDGTVRIWEVESG---RCLRVLEI---GEAIQYVAWNPL---PELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg---~~l~~l~~---~~~V~~v~~spd---g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      ..+++.|. ..|.||+....   +.++.+..   .+....++|+-+   ++..+++++.-|.|+|+|+.++..       
T Consensus        56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-------  127 (385)
T KOG1034|consen   56 QVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-------  127 (385)
T ss_pred             ceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-------
Confidence            45555554 45788887542   33333332   567788888754   334677777888899988765421       


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee--
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF--  536 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--  536 (707)
                                                 ...+.+|...|+.+.++|.. +++++++.|.   +|++|++++..+. ..|  
T Consensus       128 ---------------------------~~~~~ghG~sINeik~~p~~~qlvls~SkD~---svRlwnI~~~~Cv-~VfGG  176 (385)
T KOG1034|consen  128 ---------------------------SKNYRGHGGSINEIKFHPDRPQLVLSASKDH---SVRLWNIQTDVCV-AVFGG  176 (385)
T ss_pred             ---------------------------ccceeccCccchhhhcCCCCCcEEEEecCCc---eEEEEeccCCeEE-EEecc
Confidence                                       12467999999999999965 6889999988   9999999999998 777  


Q ss_pred             --ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe------EEE----------------------EEeCCCCCeEE
Q 005235          537 --KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR------LIK----------------------KLETGLKEVSS  585 (707)
Q Consensus       537 --~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~------~~~----------------------~l~~~~~~I~s  585 (707)
                        +|.+.|.++.|++++.+|++++ |.+|.+|++...+      +..                      +-..|...|-|
T Consensus       177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC  256 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC  256 (385)
T ss_pred             cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence              7889999999999999999988 9999999997421      110                      11124444555


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEEC-CCCC------------cceEEeecCCCCEEEEEE--cCCCCEEEEEeCCCcEEEE
Q 005235          586 IAIHPAGDNLIVGSREGKLCWFDM-DLSS------------KPYRVLKCHPKDITNVAF--HRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       586 l~~spdg~~L~sGs~Dg~I~vwDl-~~~~------------~~~~~l~~h~~~I~~vaf--spdg~llaSgs~Dg~I~Vw  650 (707)
                      +.|-  |+++++-|-++.|..|-. ....            ..+..+......|+-+.|  .|.+++||.|...|.|.+|
T Consensus       257 vrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw  334 (385)
T KOG1034|consen  257 VRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW  334 (385)
T ss_pred             HHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence            5553  789999999999999987 2111            223444455566766654  5678899999999999999


Q ss_pred             ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      |+.      .+.... ..++.-+.  .+..|...+|+-|+.+|+....|++|.-||
T Consensus       335 dL~------~~ep~~-~ttl~~s~--~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  335 DLD------NNEPPK-CTTLTHSK--SGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             ECC------CCCCcc-CceEEecc--ccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            554      333211 11222111  123499999999999999999999999997

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.70  E-value=1.4e-15  Score=150.34  Aligned_cols=236  Identities=16%  Similarity=0.223  Sum_probs=173.3

Q ss_pred             CcccCCCCcEEEEEeC----C---CcEEEEeCCC---------CeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeE
Q 005235          381 LKPYPVACYLEYKGST----D---GTVRIWEVES---------GRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDV  442 (707)
Q Consensus       381 l~pfp~~~~~l~sgs~----D---gtVrIWd~~t---------g~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V  442 (707)
                      |...|.+..+|+|+-.    .   ..+-||.+..         -+++..+..  -+.|.||.|.|+++  -+++-.++.|
T Consensus        69 las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~--klasm~dn~i  146 (370)
T KOG1007|consen   69 LASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD--KLASMDDNNI  146 (370)
T ss_pred             hhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC--eeEEeccCce
Confidence            3345555566666532    1   2367898753         234444443  56899999999984  4444458999


Q ss_pred             EEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC--CCCEEEEEeCCCCccE
Q 005235          443 LILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR--RGDYLSTVMPAGESRA  520 (707)
Q Consensus       443 ~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp--~g~~lat~s~dg~~~~  520 (707)
                      .+|++..+......    +.+                        .....+....++-+|+|  +|+.+++.+. +   +
T Consensus       147 ~l~~l~ess~~vae----v~s------------------------s~s~e~~~~ftsg~WspHHdgnqv~tt~d-~---t  194 (370)
T KOG1007|consen  147 VLWSLDESSKIVAE----VLS------------------------SESAEMRHSFTSGAWSPHHDGNQVATTSD-S---T  194 (370)
T ss_pred             EEEEcccCcchhee----ecc------------------------cccccccceecccccCCCCccceEEEeCC-C---c
Confidence            99998765432100    000                        00113566677888988  8888888763 3   8


Q ss_pred             EEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEE-Ee-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCC-CE
Q 005235          521 IFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFV-ST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAG-DN  594 (707)
Q Consensus       521 V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v-~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg-~~  594 (707)
                      +..||+++.... ..+  .|...|..+.|+|+..++++ |+ ||.|+|||+++ ..+++.+.+|..||.++.|+|.- .+
T Consensus       195 l~~~D~RT~~~~-~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  195 LQFWDLRTMKKN-NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL  273 (370)
T ss_pred             EEEEEccchhhh-cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence            999999988776 666  78888999999999887655 44 79999999986 46889999999999999999975 56


Q ss_pred             EEEEECCCcEEEEECCCCC----------------------------cceEEeecCCCCEEEEEEcCCCC-EEEEEeCCC
Q 005235          595 LIVGSREGKLCWFDMDLSS----------------------------KPYRVLKCHPKDITNVAFHRSYP-LFASCSDDC  645 (707)
Q Consensus       595 L~sGs~Dg~I~vwDl~~~~----------------------------~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg  645 (707)
                      |++|+.|..|.+|....-.                            ..+.++..|...|.+++||...+ +|||-|.||
T Consensus       274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG  353 (370)
T KOG1007|consen  274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG  353 (370)
T ss_pred             EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence            7889999999999764211                            12346778999999999998777 788999999


Q ss_pred             cEEEEe
Q 005235          646 TAYVFH  651 (707)
Q Consensus       646 ~I~Vwd  651 (707)
                      .+.|=.
T Consensus       354 RviIs~  359 (370)
T KOG1007|consen  354 RVIISS  359 (370)
T ss_pred             eEEeec
Confidence            998864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.69  E-value=3.2e-15  Score=147.85  Aligned_cols=250  Identities=16%  Similarity=0.196  Sum_probs=179.6

Q ss_pred             CeEEEEEecCCcEEEEEEc--cCCCccEEEEEe----CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEe
Q 005235          408 GRCLRVLEIGEAIQYVAWN--PLPELPVLAVSV----GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWL  481 (707)
Q Consensus       408 g~~l~~l~~~~~V~~v~~s--pdg~~~lla~s~----d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~  481 (707)
                      ++.+..+...-.+.++.|+  |+....|+.++.    .+.|.|..+...                               
T Consensus        35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~-------------------------------   83 (364)
T KOG0290|consen   35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDED-------------------------------   83 (364)
T ss_pred             cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccC-------------------------------
Confidence            4456667777888999998  344334555553    345555544321                               


Q ss_pred             cCCccce--EEeccCCCeEEEEEcCCC-----CEEEEEeCCCCccEEEEEECCCCceee---eee------ccCCCeEEE
Q 005235          482 QHDKLDG--IRLRHFKMVSSVEWHRRG-----DYLSTVMPAGESRAIFMHQLSKKLSHR---IPF------KLHGLPVSS  545 (707)
Q Consensus       482 ~~~~~~~--~~~~h~~~V~~v~~sp~g-----~~lat~s~dg~~~~V~Iwdl~~~~~~~---~~~------~~~~~V~~v  545 (707)
                        +....  ....|..+++.+.|.|+.     +.|||.+.     .+++|.+.......   ..+      .+.++++++
T Consensus        84 --s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D-----~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSF  156 (364)
T KOG0290|consen   84 --SGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD-----FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSF  156 (364)
T ss_pred             --CCceeccCCCCCCCCccceEecCCccccCcchhhcccC-----eEEEEeccCcCCceehhhhhccCcccccCCccccc
Confidence              11111  124789999999999976     46777765     89999998432221   111      345688899


Q ss_pred             EEeCCC-CEEEEEe-CCeEEEEECCCCe---EEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEe
Q 005235          546 VFHPTR-SIFFVST-KKNIRVYDLLKQR---LIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVL  619 (707)
Q Consensus       546 ~fspd~-~~l~v~s-dg~I~iwDl~~~~---~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l  619 (707)
                      .|+.-. ++|.+++ |.+..|||+.++.   ....|..|...|..++|..+| +.+|+.+.||.|++||++......-.+
T Consensus       157 DWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY  236 (364)
T KOG0290|consen  157 DWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY  236 (364)
T ss_pred             ccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence            998754 4555666 9999999999863   356688999999999999866 678999999999999998653222222


Q ss_pred             ecC--CCCEEEEEEcCCCC-EEEEEeCC-CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEE
Q 005235          620 KCH--PKDITNVAFHRSYP-LFASCSDD-CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLF  694 (707)
Q Consensus       620 ~~h--~~~I~~vafspdg~-llaSgs~D-g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~  694 (707)
                      ...  ..+...++|++..+ ++|+-..| ..|.|.|+++..        .|+..|++|.+.    |+.++|.|... .|.
T Consensus       237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------tpva~L~~H~a~----VNgIaWaPhS~~hic  304 (364)
T KOG0290|consen  237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------TPVARLRNHQAS----VNGIAWAPHSSSHIC  304 (364)
T ss_pred             cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------cceehhhcCccc----ccceEecCCCCceee
Confidence            221  45788899998655 78877665 478999776432        368999999998    99999999765 799


Q ss_pred             EEeCCCcEEEEeC
Q 005235          695 TAGADSVIRLYCH  707 (707)
Q Consensus       695 s~g~Dg~IrlWdl  707 (707)
                      |||.|..+.+|||
T Consensus       305 taGDD~qaliWDl  317 (364)
T KOG0290|consen  305 TAGDDCQALIWDL  317 (364)
T ss_pred             ecCCcceEEEEec
Confidence            9999999999996

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=7.6e-16  Score=164.35  Aligned_cols=239  Identities=16%  Similarity=0.220  Sum_probs=183.1

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCC--------CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVES--------GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE  453 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~t--------g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~  453 (707)
                      +|+.....+++|+.||++++|+++.        -+.+.+|.+ .++|.|++..++++ .+++++.||+|+.|++......
T Consensus       301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp  379 (577)
T KOG0642|consen  301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQDP  379 (577)
T ss_pred             hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeeccCceeeeeccCCCCCc
Confidence            5777788999999999999999932        245667776 89999999999995 8999999999999987632111


Q ss_pred             hcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235          454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       454 ~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~  533 (707)
                      ...+..                        ......+.+|.+.|..+++|+....|++++.||   +|++|.......  
T Consensus       380 ~ds~dp------------------------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg---Tvr~w~~~~~~~--  430 (577)
T KOG0642|consen  380 DDSYDP------------------------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG---TVRLWEPTEESP--  430 (577)
T ss_pred             ccccCc------------------------chhccceeccccceeeeeecccccceeeecCCc---eEEeeccCCcCc--
Confidence            000000                        011234779999999999999999999999999   999999877655  


Q ss_pred             eee---ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC-------CCeEEEEEcCCCCEEEEEECC
Q 005235          534 IPF---KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGL-------KEVSSIAIHPAGDNLIVGSRE  601 (707)
Q Consensus       534 ~~~---~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~-------~~I~sl~~spdg~~L~sGs~D  601 (707)
                      ..|   ...+...+|.|-.....+.+++  -+.--++++..+..+..+....       ..+.-+.++|.+.+.+++..|
T Consensus       431 ~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed  510 (577)
T KOG0642|consen  431 CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHED  510 (577)
T ss_pred             cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccC
Confidence            345   3445566777765553333333  3444455555554444443221       347788999999999999999


Q ss_pred             CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +.|++||..++ .++.....|...++++++.|+|.+|++++.||.|++|..
T Consensus       511 ~~Ir~~dn~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  511 RSIRFFDNKTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             Cceeccccccc-ccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            99999999987 889999999999999999999999999999999999954

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=5.8e-15  Score=164.55  Aligned_cols=235  Identities=13%  Similarity=0.111  Sum_probs=158.7

Q ss_pred             CCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccC
Q 005235          397 DGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDD  472 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~  472 (707)
                      +..|.|||...+. .+.+.. ...+.+++|+|+|+ .|+.++.+   ..|.+|++.++...                   
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~-------------------  241 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARK-------------------  241 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceE-------------------
Confidence            5789999986544 444444 67899999999994 56655543   25788887554211                   


Q ss_pred             CCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC
Q 005235          473 NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT  550 (707)
Q Consensus       473 ~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd  550 (707)
                                      .+....+...+++|+|+|++|++++ .++ ...|.+|++.++..  ..+ .+...+.++.|+|+
T Consensus       242 ----------------~l~~~~g~~~~~~wSPDG~~La~~~~~~g-~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpD  302 (429)
T PRK01742        242 ----------------VVASFRGHNGAPAFSPDGSRLAFASSKDG-VLNIYVMGANGGTP--SQLTSGAGNNTEPSWSPD  302 (429)
T ss_pred             ----------------EEecCCCccCceeECCCCCEEEEEEecCC-cEEEEEEECCCCCe--EeeccCCCCcCCEEECCC
Confidence                            1111222344689999999998876 454 23455667766654  345 66667889999999


Q ss_pred             CCEEEEEe--CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEE
Q 005235          551 RSIFFVST--KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT  627 (707)
Q Consensus       551 ~~~l~v~s--dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~  627 (707)
                      |..|+.++  ++...||++... .....+ .+..  .+++|+|+|++|++++.++ +.+||+.++ ... .+..+ ....
T Consensus       303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g-~~~-~lt~~-~~~~  375 (429)
T PRK01742        303 GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSG-STE-VLSST-FLDE  375 (429)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCC-CeE-EecCC-CCCC
Confidence            99877665  577888876432 222233 3333  4678999999998887754 666999876 322 23222 2346


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       628 ~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      +++|+|+|++|++++.+|.+.+|++.   +. .+.   .+..+.+|.+.    +..++|||-
T Consensus       376 ~~~~sPdG~~i~~~s~~g~~~~l~~~---~~-~G~---~~~~l~~~~g~----~~~p~wsp~  426 (429)
T PRK01742        376 SPSISPNGIMIIYSSTQGLGKVLQLV---SA-DGR---FKARLPGSDGQ----VKFPAWSPY  426 (429)
T ss_pred             CceECCCCCEEEEEEcCCCceEEEEE---EC-CCC---ceEEccCCCCC----CCCcccCCC
Confidence            78899999999999999999988653   11 222   36677788766    899999985

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.67  E-value=3.9e-15  Score=160.46  Aligned_cols=265  Identities=14%  Similarity=0.158  Sum_probs=202.9

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceE
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGI  489 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~  489 (707)
                      ...|+.++|-|||.  -+..+.++.+.+||+..|..  .+.+|.+.+.+++++     +++|+.|..|.+|+..-.-. .
T Consensus        12 ~hci~d~afkPDGs--qL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-L   88 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGT--QLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-L   88 (1081)
T ss_pred             ccchheeEECCCCc--eEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-e
Confidence            34789999999993  45556677899999998864  778899999999998     89999999999997542211 2


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL  568 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~  568 (707)
                      ...|...|.|+.|+|-...|++++..    ..-+|.......  ...+....+.+.+|..||.+|+.|. +|+|.|-+-.
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCsLs----dFglWS~~qK~V--~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~  162 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCSLS----DFGLWSPEQKSV--SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN  162 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcchh----hccccChhhhhH--HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence            45799999999999999999999864    466787654322  1225566788999999999999998 9999998743


Q ss_pred             CCeEEEEEe---CCCCCeEEEEEcCCC-----CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235          569 KQRLIKKLE---TGLKEVSSIAIHPAG-----DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS  640 (707)
Q Consensus       569 ~~~~~~~l~---~~~~~I~sl~~spdg-----~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS  640 (707)
                       ++..-.+.   +...+|.+++|+|..     +.+++.....++.++.++ + +.+..-+.-.-.-.|+.+-++|.++..
T Consensus       163 -gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G-~~Igk~r~L~FdP~CisYf~NGEy~Li  239 (1081)
T KOG1538|consen  163 -GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-G-KQIGKDRALNFDPCCISYFTNGEYILL  239 (1081)
T ss_pred             -CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-c-eeecccccCCCCchhheeccCCcEEEE
Confidence             43333333   355779999999964     678888888899999886 3 333323333334568899999999999


Q ss_pred             EeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          641 CSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       641 gs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |+.|+.+++|.-       .   .+.+.++......    |+.++.+|+++.++.|..||+|.-|+|
T Consensus       240 GGsdk~L~~fTR-------~---GvrLGTvg~~D~W----IWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  240 GGSDKQLSLFTR-------D---GVRLGTVGEQDSW----IWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ccCCCceEEEee-------c---CeEEeecccccee----EEEEEEccCCceEEEEEccCeeehhhh
Confidence            999999999931       1   1234555444444    999999999999999999999988774

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.67  E-value=1.3e-13  Score=148.54  Aligned_cols=241  Identities=23%  Similarity=0.291  Sum_probs=185.9

Q ss_pred             ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccC
Q 005235          415 EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF  494 (707)
Q Consensus       415 ~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~  494 (707)
                      .....+.++.+.+.+. .++.++.++.+.+|+......                       .          ...+..+.
T Consensus        63 ~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~-----------------------~----------~~~~~~~~  108 (466)
T COG2319          63 GHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEK-----------------------L----------IKSLEGLH  108 (466)
T ss_pred             eccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCce-----------------------e----------EEEEeccC
Confidence            3378899999999983 566666799999999765420                       0          01122212


Q ss_pred             -CCeEEEEE-cCCCC-EEEEEeC-CCCccEEEEEECCC-Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEE
Q 005235          495 -KMVSSVEW-HRRGD-YLSTVMP-AGESRAIFMHQLSK-KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYD  566 (707)
Q Consensus       495 -~~V~~v~~-sp~g~-~lat~s~-dg~~~~V~Iwdl~~-~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwD  566 (707)
                       ..+..+.+ ++++. +++..+. ++   .+.+|++.. .... ..+ .|...|.+++|+|++..+++++  ++.+++|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (466)
T COG2319         109 DSSVSKLALSSPDGNSILLASSSLDG---TVKLWDLSTPGKLI-RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWD  184 (466)
T ss_pred             CCceeeEEEECCCcceEEeccCCCCc---cEEEEEecCCCeEE-EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEE
Confidence             35666666 77787 4444343 55   999999998 5554 566 8899999999999999877775  89999999


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcceE-EeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235          567 LLKQRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSKPYR-VLKCHPKDITNVAFHRSYPLFASCSDD  644 (707)
Q Consensus       567 l~~~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~-~l~~h~~~I~~vafspdg~llaSgs~D  644 (707)
                      +..+..+..+.+|...|.+++|+|++. .+++++.|+.|.+||...+ .... .+.+|...+ ...|+|++.++++++.|
T Consensus       185 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d  262 (466)
T COG2319         185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD  262 (466)
T ss_pred             cCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCC
Confidence            999888999999999999999999998 5555599999999998855 5555 688888775 44899999999999999


Q ss_pred             CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          645 CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       645 g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +.+++|+....      ..  .+..+.+|...    |.++.|+|++..+++++.|+.+++|++
T Consensus       263 ~~~~~~~~~~~------~~--~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~d~~~~~~~~  313 (466)
T COG2319         263 GTIRLWDLRSS------SS--LLRTLSGHSSS----VLSVAFSPDGKLLASGSSDGTVRLWDL  313 (466)
T ss_pred             CcEEEeeecCC------Cc--EEEEEecCCcc----EEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence            99999965422      21  23344677666    999999999999988999999999974

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.67  E-value=9.7e-16  Score=149.78  Aligned_cols=272  Identities=14%  Similarity=0.122  Sum_probs=183.8

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhc-ccccceeeecc----cccccCCCCcEEEEecCCccceE
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQ-RRVKDLLHVET----PTAPDDNMASIVSWLQHDKLDGI  489 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~-~~~~~v~~~~~----~~~~~~~d~~i~iW~~~~~~~~~  489 (707)
                      .+.|+++.|-.++  +|+++...|.|.+|.+.+...  .+. .+...+..+..    .+.+-+.+..+.+|++.....  
T Consensus        14 ~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~--   89 (323)
T KOG0322|consen   14 SSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAF--   89 (323)
T ss_pred             cchheehhhccch--hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcce--
Confidence            6789999999998  799999999999999988654  222 12222222211    156677899999998876433  


Q ss_pred             EeccCCCeEEEEEcC-----CCC---EEEEEeCCCCccEEEEEECCCCceeeeee-----ccCCCeEEEEEeC-CCC-EE
Q 005235          490 RLRHFKMVSSVEWHR-----RGD---YLSTVMPAGESRAIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHP-TRS-IF  554 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp-----~g~---~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fsp-d~~-~l  554 (707)
                      ..-|.-.++++.|.+     +++   .++..-..+ ...+.+-|....... ...     ...+.++|..+.. .+. +|
T Consensus        90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg-sde~h~~D~g~~tqv-~i~dd~~~~Klgsvmc~~~~~~c~s~~l  167 (323)
T KOG0322|consen   90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG-SDETHKQDGGDTTQV-QIADDSERSKLGSVMCQDKDHACGSTFL  167 (323)
T ss_pred             EEEeeeeccccccccceeccCCCcchhheecCCcc-cchhhhhccCcccee-EccCchhccccCceeeeeccccccceEE
Confidence            334455556666654     221   122111111 111222232222211 111     3346677766432 333 34


Q ss_pred             EE-Ee-CCeEEEEECCCC----------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--c-eEEe
Q 005235          555 FV-ST-KKNIRVYDLLKQ----------RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK--P-YRVL  619 (707)
Q Consensus       555 ~v-~s-dg~I~iwDl~~~----------~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~--~-~~~l  619 (707)
                      +. |. +|.|.+||+.++          +.......|..+|.++.+.+.-+.=++|+.+..+..|.+.-...  + -..+
T Consensus       168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~  247 (323)
T KOG0322|consen  168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI  247 (323)
T ss_pred             EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence            44 44 799999999987          33334456888999999988777778899999999999875421  1 1222


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235          620 KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD  699 (707)
Q Consensus       620 ~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D  699 (707)
                      .-....|..+.+-||++.||+++.|+.||||+.++.         .|+..|+-|...    |++++|+|+.+.+|+||.|
T Consensus       248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsag----vn~vAfspd~~lmAaaskD  314 (323)
T KOG0322|consen  248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAG----VNAVAFSPDCELMAAASKD  314 (323)
T ss_pred             EecCCCccceEEccCCcEEeecccCCcEEEEEeccC---------Cchhhhhhhhcc----eeEEEeCCCCchhhhccCC
Confidence            223456889999999999999999999999965533         368899999875    9999999999999999999


Q ss_pred             CcEEEEeC
Q 005235          700 SVIRLYCH  707 (707)
Q Consensus       700 g~IrlWdl  707 (707)
                      ++|.+|+|
T Consensus       315 ~rISLWkL  322 (323)
T KOG0322|consen  315 ARISLWKL  322 (323)
T ss_pred             ceEEeeec
Confidence            99999986

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=9.1e-14  Score=142.01  Aligned_cols=226  Identities=11%  Similarity=0.115  Sum_probs=167.6

Q ss_pred             CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc--ccccceeeeccc-----ccccCCCCcEEEEecCCccceEE
Q 005235          418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ--RRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIR  490 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~--~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~  490 (707)
                      ..++.+.|+.+.  .+++.+.....++++.........  .....+...-|+     ++.......+++.+...+.....
T Consensus         6 ~ti~~~~~Nqd~--~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe   83 (391)
T KOG2110|consen    6 PTINFIGFNQDS--TLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE   83 (391)
T ss_pred             cceeeeeeccce--eEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence            346667788887  577777766678888765443111  112234444444     22232334477777766665556


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEeCCCCEEEEEe---CCeEE
Q 005235          491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFHPTRSIFFVST---KKNIR  563 (707)
Q Consensus       491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fspd~~~l~v~s---dg~I~  563 (707)
                      ......|.+|.++.+  .|+++-.+    .|.|||+...+.. .++    .+...+.++.+++.+.+++.-+   -|.|.
T Consensus        84 ~~fpt~IL~VrmNr~--RLvV~Lee----~IyIydI~~MklL-hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   84 IFFPTSILAVRMNRK--RLVVCLEE----SIYIYDIKDMKLL-HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             EecCCceEEEEEccc--eEEEEEcc----cEEEEecccceee-hhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            667788999998743  45554432    7999999998877 666    2344577777777777888743   59999


Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCc-EEEEECCCCCcceEEeecCC--CCEEEEEEcCCCCEEEE
Q 005235          564 VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGK-LCWFDMDLSSKPYRVLKCHP--KDITNVAFHRSYPLFAS  640 (707)
Q Consensus       564 iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~-I~vwDl~~~~~~~~~l~~h~--~~I~~vafspdg~llaS  640 (707)
                      |||+.+-+.+..+..|.+.+.+|+|+++|.+||++|..|+ |+||.+..+ ..+..|+...  ..|.+++|||++++|++
T Consensus       157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-QKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-cEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            9999999999999999999999999999999999999998 699999888 4566666433  35889999999999999


Q ss_pred             EeCCCcEEEEecc
Q 005235          641 CSDDCTAYVFHGM  653 (707)
Q Consensus       641 gs~Dg~I~Vwd~~  653 (707)
                      .|..++|+||.+.
T Consensus       236 sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  236 SSNTETVHIFKLE  248 (391)
T ss_pred             ecCCCeEEEEEec
Confidence            9999999999775

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=1.2e-14  Score=143.96  Aligned_cols=258  Identities=12%  Similarity=0.208  Sum_probs=177.5

Q ss_pred             CCCeEEE--EEecCCcEEEEEEccCCC--ccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEe
Q 005235          406 ESGRCLR--VLEIGEAIQYVAWNPLPE--LPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWL  481 (707)
Q Consensus       406 ~tg~~l~--~l~~~~~V~~v~~spdg~--~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~  481 (707)
                      .+++.+.  .|.+.-+++.+.|.|+..  ..=+.++.+..+++|.+...+..+..  ..++.                  
T Consensus        83 ~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~--~~~L~------------------  142 (364)
T KOG0290|consen   83 DSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVEL--QSVLN------------------  142 (364)
T ss_pred             CCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceeh--hhhhc------------------
Confidence            3455443  345578999999999862  12234455568999997653221100  00000                  


Q ss_pred             cCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCce--eeeee-ccCCCeEEEEEeCCCCEEE-E
Q 005235          482 QHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLS--HRIPF-KLHGLPVSSVFHPTRSIFF-V  556 (707)
Q Consensus       482 ~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~--~~~~~-~~~~~V~~v~fspd~~~l~-v  556 (707)
                           ......+..++++..|+. +-+++.+.+-|-   ++.|||+.++..  .+..+ .|...|..++|...+..+| +
T Consensus       143 -----~~kns~~~aPlTSFDWne~dp~~igtSSiDT---TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FAS  214 (364)
T KOG0290|consen  143 -----NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT---TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFAS  214 (364)
T ss_pred             -----cCcccccCCcccccccccCCcceeEeecccC---eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEE
Confidence                 001235677999999987 667888888877   999999999743  22445 9999999999998665444 4


Q ss_pred             Ee-CCeEEEEECCCCeEEEEEeC---CCCCeEEEEEcCCC-CEEEEEECC-CcEEEEECCCCCcceEEeecCCCCEEEEE
Q 005235          557 ST-KKNIRVYDLLKQRLIKKLET---GLKEVSSIAIHPAG-DNLIVGSRE-GKLCWFDMDLSSKPYRVLKCHPKDITNVA  630 (707)
Q Consensus       557 ~s-dg~I~iwDl~~~~~~~~l~~---~~~~I~sl~~spdg-~~L~sGs~D-g~I~vwDl~~~~~~~~~l~~h~~~I~~va  630 (707)
                      .+ ||.||+|||+...-...+..   ...+...++|++.. +++|+-..| ..|.|.|++....++..|++|.+.|++++
T Consensus       215 vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIa  294 (364)
T KOG0290|consen  215 VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIA  294 (364)
T ss_pred             ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceE
Confidence            44 99999999997543333322   23567888998765 556654444 56999999999899999999999999999


Q ss_pred             EcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC-CEEEEEeCC
Q 005235          631 FHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ-PWLFTAGAD  699 (707)
Q Consensus       631 fspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg-~~L~s~g~D  699 (707)
                      |.|.. ..|+||++|..+.|||+..   +...+...|+...... ..    |+.+.|++.. .||+.+...
T Consensus       295 WaPhS~~hictaGDD~qaliWDl~q---~~~~~~~dPilay~a~-~E----VNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  295 WAPHSSSHICTAGDDCQALIWDLQQ---MPRENGEDPILAYTAG-GE----VNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             ecCCCCceeeecCCcceEEEEeccc---ccccCCCCchhhhhcc-ce----eeeeeecccCCCEEEEEecC
Confidence            99965 4999999999999997642   1122333344433322 22    9999999754 588777643

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.6e-15  Score=173.63  Aligned_cols=225  Identities=14%  Similarity=0.129  Sum_probs=180.7

Q ss_pred             cEEEEEeCCCcEEEEeCCC---CeE---EEEEe-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch----hccc
Q 005235          389 YLEYKGSTDGTVRIWEVES---GRC---LRVLE-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE----EQRR  457 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~t---g~~---l~~l~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~----~~~~  457 (707)
                      .+++.|..||.|.+|+...   +..   +.++. +.+.|..+.|++.+...|++++.+|.|.|||+...+..    ....
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~  160 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP  160 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence            4899999999999999865   222   22222 28999999999998556777778999999999875432    2224


Q ss_pred             ccceeeeccc------ccccCCCCcEEEEecCCccceE-EeccC--CCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECC
Q 005235          458 VKDLLHVETP------TAPDDNMASIVSWLQHDKLDGI-RLRHF--KMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLS  527 (707)
Q Consensus       458 ~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~-~~~h~--~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~  527 (707)
                      ...|.++.|.      +++++.++.+.+||+......+ +..+.  ..+..++|||++ ..+++++.|.....|.+||++
T Consensus       161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR  240 (1049)
T KOG0307|consen  161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR  240 (1049)
T ss_pred             cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence            5677778777      8999999999999998775544 33332  347889999976 467777777767899999998


Q ss_pred             CCceeeeee-ccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCc
Q 005235          528 KKLSHRIPF-KLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGK  603 (707)
Q Consensus       528 ~~~~~~~~~-~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~  603 (707)
                      .-......+ .|...|.++.|.+.+ .+|++++ |+.|.+|+..+++.+..+....+|+..+.|+|... .+++++.||.
T Consensus       241 ~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk  320 (1049)
T KOG0307|consen  241 FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK  320 (1049)
T ss_pred             ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence            776664667 999999999999987 5566666 99999999999999999999889999999999875 7888999999


Q ss_pred             EEEEECCCCC
Q 005235          604 LCWFDMDLSS  613 (707)
Q Consensus       604 I~vwDl~~~~  613 (707)
                      |.||.+....
T Consensus       321 I~I~sl~~~~  330 (1049)
T KOG0307|consen  321 ISIYSLQGTD  330 (1049)
T ss_pred             eeeeeeecCC
Confidence            9999997653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.4e-14  Score=161.48  Aligned_cols=211  Identities=13%  Similarity=0.114  Sum_probs=148.4

Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEE
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIF  554 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l  554 (707)
                      ..+.+|+..+.....+..|...+.+++|+|+|++|++++.++....|.+||+.++... ......+...+++|+|+|..|
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~~~~~~wSPDG~~L  262 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFRGHNGAPAFSPDGSRL  262 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCCCccCceeECCCCCEE
Confidence            4566666665554456677888999999999999999886654568999999887643 211333445578999999988


Q ss_pred             EEEe--CCeEE--EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEeecCCCCEEEE
Q 005235          555 FVST--KKNIR--VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVLKCHPKDITNV  629 (707)
Q Consensus       555 ~v~s--dg~I~--iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~v  629 (707)
                      +++.  ++.+.  +||+.++.. ..+..+...+.+++|+|+|+.|+.++ .+|...||+++........+ .+..  .++
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~  338 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSA  338 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCc
Confidence            8764  66555  457766654 45666666788999999999877665 56788888876543333434 3443  467


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          630 AFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       630 afspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      +|+|+|..|+.++.++ +.+||      +.++..    ..+..+. .    ..++.|+|+|.+|++++.+|.+.+|.
T Consensus       339 ~~SpDG~~ia~~~~~~-i~~~D------l~~g~~----~~lt~~~-~----~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        339 QISADGKTLVMINGDN-VVKQD------LTSGST----EVLSSTF-L----DESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             cCCCCCCEEEEEcCCC-EEEEE------CCCCCe----EEecCCC-C----CCCceECCCCCEEEEEEcCCCceEEE
Confidence            8999999998887765 55584      433332    2222221 1    45678999999999999999888875

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.64  E-value=8.2e-15  Score=150.28  Aligned_cols=202  Identities=15%  Similarity=0.214  Sum_probs=158.3

Q ss_pred             EeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceee------eee-ccCCCeEEEEEeCCCC-EEEEEe-C
Q 005235          490 RLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHR------IPF-KLHGLPVSSVFHPTRS-IFFVST-K  559 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~------~~~-~~~~~V~~v~fspd~~-~l~v~s-d  559 (707)
                      ..+|.++|..++|+| +...+|+|+.|.   +|.||++..+....      ..+ +|...|-.|+|||... .|++++ |
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~---~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDT---KVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCc---eEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            558999999999999 556788999888   99999987654321      344 8899999999999754 455555 9


Q ss_pred             CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC-EEEEEEcCCCCEE
Q 005235          560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD-ITNVAFHRSYPLF  638 (707)
Q Consensus       560 g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~-I~~vafspdg~ll  638 (707)
                      .+|.+||+.+++.+-++. |...|.++.|+-+|.+|++.+.|++|+|||.+++ +++..-.+|.+. -..+.|-.+|.++
T Consensus       154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEeccCcee
Confidence            999999999999888887 8899999999999999999999999999999988 667766778653 3456687888865


Q ss_pred             EEEe---CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235          639 ASCS---DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       639 aSgs---~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl  707 (707)
                      .+|-   .+..+-+|+-.   ++...   .-+..|....     ||.---|.|+...|+.+| .|+.||.|.+
T Consensus       232 tTGfsr~seRq~aLwdp~---nl~eP---~~~~elDtSn-----Gvl~PFyD~dt~ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPN---NLEEP---IALQELDTSN-----GVLLPFYDPDTSIVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             eeccccccccceeccCcc---cccCc---ceeEEeccCC-----ceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence            5553   57789999654   22222   1244554443     488888999999886555 7999999853

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.64  E-value=2.2e-15  Score=151.38  Aligned_cols=227  Identities=19%  Similarity=0.272  Sum_probs=169.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      -+++.||.-|.|||.|+.++++...+.+ +..|+.|.++|+....+++++.|..|++|++.+....              
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv--------------  171 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV--------------  171 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE--------------
Confidence            3788888999999999999999998888 8999999999998778889999999999998775321              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--------------e
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--------------R  533 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--------------~  533 (707)
                                .++       +-..+|.+.|.++.|+.+|.+|++++.|.   ++++|++...+..              .
T Consensus       172 ----------~Vf-------GG~egHrdeVLSvD~~~~gd~i~ScGmDh---slk~W~l~~~~f~~~lE~s~~~~~~~t~  231 (385)
T KOG1034|consen  172 ----------AVF-------GGVEGHRDEVLSVDFSLDGDRIASCGMDH---SLKLWRLNVKEFKNKLELSITYSPNKTT  231 (385)
T ss_pred             ----------EEe-------cccccccCcEEEEEEcCCCCeeeccCCcc---eEEEEecChhHHhhhhhhhcccCCCCcc
Confidence                      111       11458999999999999999999999988   9999999842211              0


Q ss_pred             eee--------------ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-Ce-------------EEEEEeCCCCCe-
Q 005235          534 IPF--------------KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-QR-------------LIKKLETGLKEV-  583 (707)
Q Consensus       534 ~~~--------------~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-~~-------------~~~~l~~~~~~I-  583 (707)
                      .+|              -|...|.|+.|-  |.++++-+ ++.|..|-..+ .+             .+..+.-....| 
T Consensus       232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW  309 (385)
T KOG1034|consen  232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW  309 (385)
T ss_pred             CcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE
Confidence            111              123344444444  46677755 89999998721 11             122233233333 


Q ss_pred             -EEEEEcCCCCEEEEEECCCcEEEEECCCCCcce-EEeecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          584 -SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY-RVLKCH--PKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       584 -~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~-~~l~~h--~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                       ...+|.|-++.||.|...|.|++||++....+. .++..+  ...|+..+||.++.+|+...+|++|.-||
T Consensus       310 firf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  310 FIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             EEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence             345667888999999999999999998764322 223222  45799999999999999999999999995

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.62  E-value=4.1e-14  Score=142.12  Aligned_cols=280  Identities=11%  Similarity=0.164  Sum_probs=171.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee-eec
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL-HVE  465 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~-~~~  465 (707)
                      +.++.....|+.|.+|++...+-...+.. ...+.+++|||+|...|.++..+-.|.+|.+.+.......+.+... ..+
T Consensus        61 ~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~  140 (447)
T KOG4497|consen   61 CHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYA  140 (447)
T ss_pred             eeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEE
Confidence            34677778999999999988887777766 7889999999999545556667889999998776443222221111 111


Q ss_pred             ccccccCCCCcE-EEEecCCcc-------------ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce
Q 005235          466 TPTAPDDNMASI-VSWLQHDKL-------------DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS  531 (707)
Q Consensus       466 ~~~~~~~~d~~i-~iW~~~~~~-------------~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~  531 (707)
                      |     ..+|.. .+-.+..-+             .....-.+-..+.+.|+|+|+.||+            ||---.-.
T Consensus       141 f-----~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV------------wd~~Leyk  203 (447)
T KOG4497|consen  141 F-----HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV------------WDNVLEYK  203 (447)
T ss_pred             E-----CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE------------ecchhhhe
Confidence            1     011111 011100000             0001111233456677777765554            33211111


Q ss_pred             eeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe---------------------------------------
Q 005235          532 HRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR---------------------------------------  571 (707)
Q Consensus       532 ~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~---------------------------------------  571 (707)
                      . ..+.-.-.+..++|+|.+++|++|+ |+.+||.|--+-+                                       
T Consensus       204 v-~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~  282 (447)
T KOG4497|consen  204 V-YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT  282 (447)
T ss_pred             e-eeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC
Confidence            1 1112234577899999999999998 9988886642111                                       


Q ss_pred             ---------------------EEEEEeC------CCCCeEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcceEEeecC
Q 005235          572 ---------------------LIKKLET------GLKEVSSIAIHPAGDNLIVGSR--EGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       572 ---------------------~~~~l~~------~~~~I~sl~~spdg~~L~sGs~--Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                                           .+.+++.      ....+.-++|++|..++++-..  -+.+-+||++.. +....+ -.
T Consensus       283 ~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l-~l~avL-iQ  360 (447)
T KOG4497|consen  283 DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL-KLHAVL-IQ  360 (447)
T ss_pred             ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh-hhhhhh-hh
Confidence                                 0111111      1123677899999999888643  356899999865 433333 24


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235          623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV  701 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~  701 (707)
                      ..+|++..|+|..+.|+.+.....+++|-      ... +..  +. ..+..    ..|..+.|+-+|..|+-.|.|.-
T Consensus       361 k~piraf~WdP~~prL~vctg~srLY~W~------psg-~~~--V~-vP~~G----F~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  361 KHPIRAFEWDPGRPRLVVCTGKSRLYFWA------PSG-PRV--VG-VPKKG----FNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             ccceeEEEeCCCCceEEEEcCCceEEEEc------CCC-ceE--Ee-cCCCC----ceeeeEEecCCCcEEEEEcCCce
Confidence            67899999999999999888777889993      222 221  11 11111    23999999999999999998863

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=2.2e-13  Score=138.54  Aligned_cols=226  Identities=18%  Similarity=0.231  Sum_probs=156.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      -++.+..|-+||+|+-.. .+...++.  ...|+|++|-|.+. .-++++.-+.|.+|........-             
T Consensus       112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsa-selavgCr~gIciW~~s~tln~~-------------  176 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSA-SELAVGCRAGICIWSDSRTLNAN-------------  176 (445)
T ss_pred             hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCc-ceeeeeecceeEEEEcCcccccc-------------
Confidence            456778899999999766 66667777  78899999999985 46677777789999865431100             


Q ss_pred             ccccCCCCcEEEEecCCccceE--EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGI--RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPV  543 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~--~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~  543 (707)
                             ..++.  ..+....+  -.+| ..|+++.|.++|..+++++.+.  ..|.|||.+++..+  ++  ...+.+.
T Consensus       177 -------r~~~~--~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs--ssi~iWdpdtg~~~--pL~~~glgg~s  242 (445)
T KOG2139|consen  177 -------RNIRM--MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS--SSIMIWDPDTGQKI--PLIPKGLGGFS  242 (445)
T ss_pred             -------ccccc--ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc--ceEEEEcCCCCCcc--cccccCCCcee
Confidence                   00000  00000111  2234 6899999999999999999854  69999999999885  44  6678889


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce------
Q 005235          544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY------  616 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~------  616 (707)
                      -+.|+||+.+|++++ |+..++|+....-.........+.|...+|+|+|++|+..+. |.-.+|.+...+++.      
T Consensus       243 lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~  321 (445)
T KOG2139|consen  243 LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ  321 (445)
T ss_pred             eEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence            999999999999999 999999976544332233344568999999999998776554 233344433211110      


Q ss_pred             --------EE------eec---CCCCEEEEEEcCCCCEEEEEeCCC
Q 005235          617 --------RV------LKC---HPKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       617 --------~~------l~~---h~~~I~~vafspdg~llaSgs~Dg  645 (707)
                              ..      ..+   -.+.+.+++|.|.|.+||+.-..+
T Consensus       322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence                    00      011   135678999999999999876443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=8.2e-14  Score=142.36  Aligned_cols=193  Identities=18%  Similarity=0.261  Sum_probs=150.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l  576 (707)
                      |.-+-|+  ..++|.++.+. .+.+++.++.++... ..+.....|.+|.++  .+.|+++-...|+|||+.+.+++.++
T Consensus        49 IvEmLFS--SSLvaiV~~~q-pr~Lkv~~~Kk~~~I-Ce~~fpt~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI  122 (391)
T KOG2110|consen   49 IVEMLFS--SSLVAIVSIKQ-PRKLKVVHFKKKTTI-CEIFFPTSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTI  122 (391)
T ss_pred             EEEeecc--cceeEEEecCC-CceEEEEEcccCceE-EEEecCCceEEEEEc--cceEEEEEcccEEEEecccceeehhh
Confidence            4444454  45677777644 478999999888776 555666788888887  45678877777999999999999887


Q ss_pred             eC---CCCCeEEEEEcCCCCEEEEE--ECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc-EEEE
Q 005235          577 ET---GLKEVSSIAIHPAGDNLIVG--SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT-AYVF  650 (707)
Q Consensus       577 ~~---~~~~I~sl~~spdg~~L~sG--s~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~-I~Vw  650 (707)
                      ..   +...+.++++++.+.+|+.-  ...|.|.+||+.+- +++.++.+|.+.+.+++||++|.+||++|+-|+ ||||
T Consensus       123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf  201 (391)
T KOG2110|consen  123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF  201 (391)
T ss_pred             hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence            64   33447777777777788864  33688999999877 889999999999999999999999999999996 6899


Q ss_pred             ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ++.      .+..   +..|+-....  ..|.+++|||++++|.+.|..++|++|.|
T Consensus       202 ~v~------~G~k---l~eFRRG~~~--~~IySL~Fs~ds~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  202 SVP------EGQK---LYEFRRGTYP--VSIYSLSFSPDSQFLAASSNTETVHIFKL  247 (391)
T ss_pred             EcC------CccE---eeeeeCCcee--eEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence            653      3333   5555433221  23899999999999999999999999975

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=1.5e-14  Score=154.46  Aligned_cols=246  Identities=14%  Similarity=0.128  Sum_probs=176.2

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|..++|.|.. ..|++++.++.+.+|++......                  +......+|        .+.+|.++
T Consensus       294 ~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s------------------~~~~~epi~--------tfraH~gP  346 (577)
T KOG0642|consen  294 DDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKS------------------AEKDVEPIL--------TFRAHEGP  346 (577)
T ss_pred             hhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCc------------------cccceeeeE--------EEecccCc
Confidence            5778889999987 48999999999999998331100                  011122333        46799999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc---------eeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL---------SHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVY  565 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~---------~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iw  565 (707)
                      |.|+++.+++.++.+|+-||   +|+.|++....         ....+| +|.+.|..+++|+....|++++ ||+||+|
T Consensus       347 Vl~v~v~~n~~~~ysgg~Dg---~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w  423 (577)
T KOG0642|consen  347 VLCVVVPSNGEHCYSGGIDG---TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLW  423 (577)
T ss_pred             eEEEEecCCceEEEeeccCc---eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEee
Confidence            99999999999999999999   99999765211         111445 8999999999999999999887 9999999


Q ss_pred             ECCCCeEEEEEeC--CCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEeecC-------CCCEEEEEEcCCC
Q 005235          566 DLLKQRLIKKLET--GLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCH-------PKDITNVAFHRSY  635 (707)
Q Consensus       566 Dl~~~~~~~~l~~--~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-------~~~I~~vafspdg  635 (707)
                      +.....+ .++..  ..+...++++-... .+.++...-+.-.++++.+. ..+..+...       ...+..|.++|.+
T Consensus       424 ~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~  501 (577)
T KOG0642|consen  424 EPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTA  501 (577)
T ss_pred             ccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCC
Confidence            9876655 33322  12345666664333 22222222233344444443 223333211       1347789999999


Q ss_pred             CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          636 PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       636 ~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .+.+++..|+.|+++|..      ++.   ++.....|...    |+++++.|.|++|++++.||.|++|.+
T Consensus       502 ~~~~~~hed~~Ir~~dn~------~~~---~l~s~~a~~~s----vtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  502 DITFTAHEDRSIRFFDNK------TGK---ILHSMVAHKDS----VTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             CeeEecccCCceeccccc------ccc---cchheeeccce----ecceeecCCCceEEeecCCceeehhhc
Confidence            999999999999999543      332   36677788887    999999999999999999999999975

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.59  E-value=3.6e-15  Score=155.69  Aligned_cols=263  Identities=15%  Similarity=0.126  Sum_probs=204.2

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      |..++..++.|+.-|.|-.+|+.|+++...+.....|..+.|-.+.  .++|++....++|||-...+            
T Consensus       137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne--q~~AVAQK~y~yvYD~~GtE------------  202 (545)
T KOG1272|consen  137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE--QFFAVAQKKYVYVYDNNGTE------------  202 (545)
T ss_pred             ecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcch--HHHHhhhhceEEEecCCCcE------------
Confidence            6678889999999999999999999999999999999999999887  69999999999999833211            


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP  542 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V  542 (707)
                                             . -.+.....|..+.|-|-.-+|++++..|   .+...|+++++.. ..| ...+.+
T Consensus       203 -----------------------l-HClk~~~~v~rLeFLPyHfLL~~~~~~G---~L~Y~DVS~GklV-a~~~t~~G~~  254 (545)
T KOG1272|consen  203 -----------------------L-HCLKRHIRVARLEFLPYHFLLVAASEAG---FLKYQDVSTGKLV-ASIRTGAGRT  254 (545)
T ss_pred             -----------------------E-eehhhcCchhhhcccchhheeeecccCC---ceEEEeechhhhh-HHHHccCCcc
Confidence                                   1 1223356788899999888889998877   9999999999988 888 778888


Q ss_pred             EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235          543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                      ..++-+|-+..+-+|. .|+|.+|.....+++.++.+|.++|++|+++++|.++|+.+.|..|+|||++.-. .+.++..
T Consensus       255 ~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~t  333 (545)
T KOG1272|consen  255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLHTYRT  333 (545)
T ss_pred             chhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-ccceeec
Confidence            9999999888888887 8999999999999999999999999999999999999999999999999999763 3333332


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                       .-+...++||..|-+  ++|....|.||.     |...... ..-...-.|.-  +..|.++.|+|-...|-.|-..|
T Consensus       334 -p~~a~~ls~SqkglL--A~~~G~~v~iw~-----d~~~~s~-~~~~pYm~H~~--~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  334 -PHPASNLSLSQKGLL--ALSYGDHVQIWK-----DALKGSG-HGETPYMNHRC--GGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             -CCCccccccccccce--eeecCCeeeeeh-----hhhcCCC-CCCcchhhhcc--CcccccceeccHHHeeeccccCC
Confidence             345678899877743  344556799995     2222110 00111112221  11399999999877665554443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=8.4e-13  Score=147.03  Aligned_cols=239  Identities=10%  Similarity=0.068  Sum_probs=156.8

Q ss_pred             cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcccccceeeecccccccCCCC
Q 005235          399 TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA  475 (707)
Q Consensus       399 tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~  475 (707)
                      .|.+||...+.......+...+.+.+|+|||+ .|+.++.   ...|.+|++.++..                       
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~-----------------------  235 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV-----------------------  235 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCe-----------------------
Confidence            68899987555443344567899999999994 4554432   23567777654421                       


Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF  555 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~  555 (707)
                                  ..+....+.+..++|+|+|+.|+......+...|.+||+.++... ........+....|+|+|+.|+
T Consensus       236 ------------~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~  302 (429)
T PRK03629        236 ------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLA  302 (429)
T ss_pred             ------------EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEE
Confidence                        112222334556899999999987654332457999999887654 3335556778899999999887


Q ss_pred             EEeC--C--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeecCCCCEEE
Q 005235          556 VSTK--K--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKCHPKDITN  628 (707)
Q Consensus       556 v~sd--g--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~h~~~I~~  628 (707)
                      .+++  +  .|.++|+.++.. ..+........+.+|+|+|++|+..+.+   ..|.+||+.++ . ...+... .....
T Consensus       303 f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~-~~~~~  378 (429)
T PRK03629        303 YTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDT-FLDET  378 (429)
T ss_pred             EEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC-C-eEEeCCC-CCCCC
Confidence            7663  3  455567776644 3444444456788999999999886654   35888999866 3 3444422 23457


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          629 VAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       629 vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      ..|+|+|.+|+.++.++...++.+.   ++... .   ...+.+|...    +..++|+|-
T Consensus       379 p~~SpDG~~i~~~s~~~~~~~l~~~---~~~G~-~---~~~l~~~~~~----~~~p~Wsp~  428 (429)
T PRK03629        379 PSIAPNGTMVIYSSSQGMGSVLNLV---STDGR-F---KARLPATDGQ----VKFPAWSPY  428 (429)
T ss_pred             ceECCCCCEEEEEEcCCCceEEEEE---ECCCC-C---eEECccCCCC----cCCcccCCC
Confidence            8899999999998888753333221   22221 1   4567777666    889999983

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.58  E-value=2.3e-13  Score=139.82  Aligned_cols=204  Identities=13%  Similarity=0.192  Sum_probs=158.5

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .++|..++|+|-.+..|++++.|.+|.||.+..+..... .                          ......+.+|...
T Consensus        81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-l--------------------------tepvv~L~gH~rr  133 (472)
T KOG0303|consen   81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-L--------------------------TEPVVELYGHQRR  133 (472)
T ss_pred             cccccccccCccCCceeecCCCCceEEEEECCCcccccC-c--------------------------ccceEEEeeccee
Confidence            789999999998877788888899999999876532110 0                          0112347799999


Q ss_pred             eEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235          497 VSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       497 V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~  574 (707)
                      |--|+|||.. +.|++++.|.   +|.||++.++... ..+.|...|.++.|+.+|.+|++++ |..|||||.++++.+.
T Consensus       134 Vg~V~wHPtA~NVLlsag~Dn---~v~iWnv~tgeal-i~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~  209 (472)
T KOG0303|consen  134 VGLVQWHPTAPNVLLSAGSDN---TVSIWNVGTGEAL-ITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS  209 (472)
T ss_pred             EEEEeecccchhhHhhccCCc---eEEEEeccCCcee-eecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence            9999999954 6788888877   9999999999987 7789999999999999999999988 9999999999999998


Q ss_pred             EEeCCCCC-eEEEEEcCCCCEEEEEE---CCCcEEEEECCCCCcce--EEeecCCCCEEEEEEcCCCCEEEEEe-CCCcE
Q 005235          575 KLETGLKE-VSSIAIHPAGDNLIVGS---REGKLCWFDMDLSSKPY--RVLKCHPKDITNVAFHRSYPLFASCS-DDCTA  647 (707)
Q Consensus       575 ~l~~~~~~-I~sl~~spdg~~L~sGs---~Dg~I~vwDl~~~~~~~--~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I  647 (707)
                      .-.+|.+. -..+.|-.+|..+-+|.   .++.+.+||...-..|+  ..+.. +..|.---|.++..++..|+ .|+.|
T Consensus       210 e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~I  288 (472)
T KOG0303|consen  210 EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSI  288 (472)
T ss_pred             ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcce
Confidence            87776543 34455667788555553   46789999987765554  33333 34566666788888776555 79999


Q ss_pred             EEEec
Q 005235          648 YVFHG  652 (707)
Q Consensus       648 ~Vwd~  652 (707)
                      +-|.+
T Consensus       289 RYyEi  293 (472)
T KOG0303|consen  289 RYFEI  293 (472)
T ss_pred             EEEEe
Confidence            99954

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=6.6e-13  Score=148.76  Aligned_cols=309  Identities=15%  Similarity=0.162  Sum_probs=210.4

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCC--ccEEEEEeCCeEEEEECCCCCchh-ccccc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPE--LPVLAVSVGQDVLILNTGLGNEEE-QRRVK  459 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~--~~lla~s~d~~V~lwd~~~~~~~~-~~~~~  459 (707)
                      |+.+...++... +..|.||.+.||.|+..+.. ..++..+.+.|...  ..+++++.+|.|++|+...+...- ....-
T Consensus        24 fSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~  102 (792)
T KOG1963|consen   24 FSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL  102 (792)
T ss_pred             cccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC
Confidence            666666666654 45799999999999998887 88999999988775  356688999999999988764311 11111


Q ss_pred             ceeeeccc---------------------ccccCCCCcEEEEecCCccc---eEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 005235          460 DLLHVETP---------------------TAPDDNMASIVSWLQHDKLD---GIRLRHFKMVSSVEWHRRGDYLSTVMPA  515 (707)
Q Consensus       460 ~v~~~~~~---------------------~~~~~~d~~i~iW~~~~~~~---~~~~~h~~~V~~v~~sp~g~~lat~s~d  515 (707)
                      .+....+.                     .......++++-+.......   .....|.. -.+|.+++.|.+.+.+-..
T Consensus       103 ~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~  181 (792)
T KOG1963|consen  103 PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMC  181 (792)
T ss_pred             ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEee
Confidence            11111110                     00111111122121111000   01112222 4678888888876665543


Q ss_pred             CCccEEEEEECCCCceee--eee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC--C--eEEEEEeCCCCCeEEE
Q 005235          516 GESRAIFMHQLSKKLSHR--IPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK--Q--RLIKKLETGLKEVSSI  586 (707)
Q Consensus       516 g~~~~V~Iwdl~~~~~~~--~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~--~--~~~~~l~~~~~~I~sl  586 (707)
                          .+.+|...++....  ...  .|.-.++++++||++.++++|. ||.|.+|.--.  .  .....+.=|...|+++
T Consensus       182 ----~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L  257 (792)
T KOG1963|consen  182 ----KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL  257 (792)
T ss_pred             ----eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence                78899888754221  111  5566689999999999999998 89999996332  1  2334566788899999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccc
Q 005235          587 AIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVP  666 (707)
Q Consensus       587 ~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~p  666 (707)
                      +|+++|.+|++|+..|.+.+|.+.++.  .+-|..-.++|..+.+|||+.+.+....|..|.+-++.   |+.....+.-
T Consensus       258 ~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~---dl~~k~tIsg  332 (792)
T KOG1963|consen  258 SFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS---DLEIKSTISG  332 (792)
T ss_pred             EEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc---chhhhhhccC
Confidence            999999999999999999999999884  34466667899999999999999999999999999765   3322222111


Q ss_pred             eEEe-----eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          667 LEIL-----RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       667 l~~l-----~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +...     ++...-    .+.++++|.-..++-.+..|.|.+||+
T Consensus       333 i~~~~~~~k~~~~~l----~t~~~idpr~~~~vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  333 IKPPTPSTKTRPQSL----TTGVSIDPRTNSLVLNGHPGHVQFYDL  374 (792)
T ss_pred             ccCCCcccccccccc----ceeEEEcCCCCceeecCCCceEEEEec
Confidence            1111     111222    678899998788899999999999985

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=5.6e-14  Score=142.13  Aligned_cols=187  Identities=14%  Similarity=0.156  Sum_probs=144.6

Q ss_pred             CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCCCeEEE--EEeCCC
Q 005235          507 DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLKQRLIK--KLETGL  580 (707)
Q Consensus       507 ~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~~~~~~--~l~~~~  580 (707)
                      ..+|++..+|   .|++||..+++.. ..| .+...+..+.|...  ...+.+|+ ||+|++||++......  ....+.
T Consensus        41 ~~vav~lSng---sv~lyd~~tg~~l-~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNG---SVRLYDKGTGQLL-EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS  116 (376)
T ss_pred             eeEEEEecCC---eEEEEeccchhhh-heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence            5678888777   9999999998887 888 88899999999873  44566666 9999999999864433  333343


Q ss_pred             -CCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCCCcceEEe-ecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235          581 -KEVSSIAIHPAGDNLIVGSR----EGKLCWFDMDLSSKPYRVL-KCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       581 -~~I~sl~~spdg~~L~sGs~----Dg~I~vwDl~~~~~~~~~l-~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~  653 (707)
                       .+..|++..-.+..+++|+.    +-.|.+||++...+++..+ ..|...|++|.|||..+ +|+|||.||.|.|||+.
T Consensus       117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence             46788888778888888864    6679999999886655444 58999999999999765 99999999999999765


Q ss_pred             cccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 005235          654 VYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ-PWLFTAGADSVIRLYCH  707 (707)
Q Consensus       654 ~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg-~~L~s~g~Dg~IrlWdl  707 (707)
                      ..      +.-.++...-.|...    |..+.|+..+ +.|.+-+...+..+|++
T Consensus       197 ~d------~EeDaL~~viN~~sS----I~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  197 KD------NEEDALLHVINHGSS----IHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             CC------cchhhHHHhhcccce----eeeeeeecCCcceEEEEEccCceeEEEc
Confidence            32      222233334445555    9999999877 45888899999999975

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=8.7e-13  Score=132.59  Aligned_cols=239  Identities=20%  Similarity=0.242  Sum_probs=164.3

Q ss_pred             cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235          419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS  498 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~  498 (707)
                      ...+++|+.|.  .-++++.+.-.+||+.+-......                                  ...+.+.+.
T Consensus         7 ~~lsvs~NQD~--ScFava~~~Gfriyn~~P~ke~~~----------------------------------r~~~~~G~~   50 (346)
T KOG2111|consen    7 KTLSVSFNQDH--SCFAVATDTGFRIYNCDPFKESAS----------------------------------RQFIDGGFK   50 (346)
T ss_pred             ceeEEEEccCC--ceEEEEecCceEEEecCchhhhhh----------------------------------hccccCchh
Confidence            34569999988  578888888899998754211100                                  000111111


Q ss_pred             EEEEcCCCCEEEEEeCCC----CccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCC-CeEE
Q 005235          499 SVEWHRRGDYLSTVMPAG----ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK-QRLI  573 (707)
Q Consensus       499 ~v~~sp~g~~lat~s~dg----~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~-~~~~  573 (707)
                      -+..--..++||.++..+    ....|.|||-....+. ..+....+|.+|.+.++  .|++...+.|.||.... -+.+
T Consensus        51 ~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i-~el~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l  127 (346)
T KOG2111|consen   51 IVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCI-IELSFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLL  127 (346)
T ss_pred             hhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEE-EEEEeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhhe
Confidence            111111345665544222    3468999997777776 77788899999999865  68888899999999874 4555


Q ss_pred             EEEeCCC--CCeEEEEEcCCCCEEEE-EECCCcEEEEECCCCCc-ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc-EE
Q 005235          574 KKLETGL--KEVSSIAIHPAGDNLIV-GSREGKLCWFDMDLSSK-PYRVLKCHPKDITNVAFHRSYPLFASCSDDCT-AY  648 (707)
Q Consensus       574 ~~l~~~~--~~I~sl~~spdg~~L~s-Gs~Dg~I~vwDl~~~~~-~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~-I~  648 (707)
                      +.+..-.  ..+.+++-+.+..+||. |-.-|.|.|-|+..... +-..+.+|...|.+++.+.+|.++||||..|+ ||
T Consensus       128 ~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR  207 (346)
T KOG2111|consen  128 HVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR  207 (346)
T ss_pred             eeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence            5554332  33544444434445554 45568999999976522 34788999999999999999999999999996 79


Q ss_pred             EEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          649 VFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       649 Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |||.      .++..   +.+++-...  ...|.+++|||++.||+.+|.-|+|.||.|
T Consensus       208 IFdt------~~g~~---l~E~RRG~d--~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  208 IFDT------EDGTL---LQELRRGVD--RADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             EEEc------CCCcE---eeeeecCCc--hheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence            9954      44444   444442221  123999999999999999999999999975

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=3.5e-14  Score=147.47  Aligned_cols=193  Identities=15%  Similarity=0.113  Sum_probs=146.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEE
Q 005235          498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l  576 (707)
                      .+++|+.+|..+++++.||   .++||++...... ... .|.+.|.++.|+||+++|++-+....+||++.++..+...
T Consensus       148 k~vaf~~~gs~latgg~dg---~lRv~~~Ps~~t~-l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDG---TLRVWEWPSMLTI-LEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccc---eEEEEecCcchhh-hhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhc
Confidence            7899999999999999999   9999998877666 555 9999999999999999999877339999999999776665


Q ss_pred             eCCC--CCeEEEEEcCCC---CEE--EEEECCCcEEEEECCCCCc----ceEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235          577 ETGL--KEVSSIAIHPAG---DNL--IVGSREGKLCWFDMDLSSK----PYRVLKCHPKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       577 ~~~~--~~I~sl~~spdg---~~L--~sGs~Dg~I~vwDl~~~~~----~~~~l~~h~~~I~~vafspdg~llaSgs~Dg  645 (707)
                      ....  -.+..+.|+.++   .++  +....-+.|..||+.....    +......-...|++++.+++|+++|.|+.||
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence            5322  236778888776   332  3333445677777655432    2222222345799999999999999999999


Q ss_pred             cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .|-|++..      +....  ...-+.|...    |+.+.|+|+.+++++.+.|.++.|..
T Consensus       304 sVai~~~~------~lq~~--~~vk~aH~~~----VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  304 SVAIYDAK------SLQRL--QYVKEAHLGF----VTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             cEEEEEec------eeeee--Eeehhhheee----eeeEEEcCCcCcccccccCCceeEEE
Confidence            99999543      22221  2223567766    99999999999999999999888754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.56  E-value=6e-12  Score=135.44  Aligned_cols=233  Identities=12%  Similarity=0.102  Sum_probs=154.1

Q ss_pred             CCCCcEEEEE-eCCCcEEEEeCC-CCeE--EEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhccccc
Q 005235          385 PVACYLEYKG-STDGTVRIWEVE-SGRC--LRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       385 p~~~~~l~sg-s~DgtVrIWd~~-tg~~--l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      ..++.+||.+ ..++.|.+|++. +|..  +......+....|+|+|+++ .+++++ .++.|.+|++........    
T Consensus        43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~----  117 (330)
T PRK11028         43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGR-FLFSASYNANCVSVSPLDKDGIPVA----  117 (330)
T ss_pred             CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCC-EEEEEEcCCCeEEEEEECCCCCCCC----
Confidence            3345566655 458899999986 4543  33333355678999999994 455555 478899998753211000    


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee------
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR------  533 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~------  533 (707)
                                      .          . ....+...+.+++++|+|+++++++..  .+.|.+|++.+.....      
T Consensus       118 ----------------~----------~-~~~~~~~~~~~~~~~p~g~~l~v~~~~--~~~v~v~d~~~~g~l~~~~~~~  168 (330)
T PRK11028        118 ----------------P----------I-QIIEGLEGCHSANIDPDNRTLWVPCLK--EDRIRLFTLSDDGHLVAQEPAE  168 (330)
T ss_pred             ----------------c----------e-eeccCCCcccEeEeCCCCCEEEEeeCC--CCEEEEEEECCCCcccccCCCc
Confidence                            0          0 011222346778999999999776653  2399999997633220      


Q ss_pred             eeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--C--eEEEEEeC------CCCCeEEEEEcCCCCEEEEEEC-
Q 005235          534 IPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--Q--RLIKKLET------GLKEVSSIAIHPAGDNLIVGSR-  600 (707)
Q Consensus       534 ~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~--~~~~~l~~------~~~~I~sl~~spdg~~L~sGs~-  600 (707)
                      ..+.....+..++|+|+++++++++  ++.|.+|++..  +  +.+.++..      +..+...+.++|+|++|+++.. 
T Consensus       169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~  248 (330)
T PRK11028        169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT  248 (330)
T ss_pred             eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence            1122344567899999999999887  79999999973  3  33444432      1223457899999999998854 


Q ss_pred             CCcEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEEeC-CCcEEEEec
Q 005235          601 EGKLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASCSD-DCTAYVFHG  652 (707)
Q Consensus       601 Dg~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSgs~-Dg~I~Vwd~  652 (707)
                      ++.|.+|+++....... +.++   ....+.++|+|+|++|+++.. +++|.||++
T Consensus       249 ~~~I~v~~i~~~~~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        249 ASLISVFSVSEDGSVLS-FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             CCeEEEEEEeCCCCeEE-EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            68899999975432222 2222   124567899999998887664 899999965

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=5.9e-14  Score=145.75  Aligned_cols=194  Identities=17%  Similarity=0.187  Sum_probs=148.5

Q ss_pred             EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEE
Q 005235          421 QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSV  500 (707)
Q Consensus       421 ~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v  500 (707)
                      .+|+|+++| ..+.+++.||++++|+++.....                                  .....|.+.|.++
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~----------------------------------l~e~~~~~eV~DL  192 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTI----------------------------------LEEIAHHAEVKDL  192 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhh----------------------------------hhhHhhcCccccc
Confidence            789999998 47888889999999996553221                                  1245789999999


Q ss_pred             EEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee---eccCCCeEEEEEeCCC---CEEEEEe---CCeEEEEECCCCe
Q 005235          501 EWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP---FKLHGLPVSSVFHPTR---SIFFVST---KKNIRVYDLLKQR  571 (707)
Q Consensus       501 ~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~---~~~~~~V~~v~fspd~---~~l~v~s---dg~I~iwDl~~~~  571 (707)
                      .|+|+|+.|++.+.+    ..+||+..++... ..   +........+.|+.++   .+++.+.   .+.|+.|++....
T Consensus       193 ~FS~dgk~lasig~d----~~~VW~~~~g~~~-a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~  267 (398)
T KOG0771|consen  193 DFSPDGKFLASIGAD----SARVWSVNTGAAL-ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS  267 (398)
T ss_pred             eeCCCCcEEEEecCC----ceEEEEeccCchh-hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence            999999999999986    6899999998544 32   2334456677787766   3333332   3778888765421


Q ss_pred             -----EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235          572 -----LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT  646 (707)
Q Consensus       572 -----~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~  646 (707)
                           ..++.......|++|+++++|++++.|+.||.|.|++...-...+..-+.|...|+.+.|+|+.+++++.+.|..
T Consensus       268 ~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~  347 (398)
T KOG0771|consen  268 GSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE  347 (398)
T ss_pred             cccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence                 122222333679999999999999999999999999998765555566789999999999999999999999999


Q ss_pred             EEEEeccc
Q 005235          647 AYVFHGMV  654 (707)
Q Consensus       647 I~Vwd~~~  654 (707)
                      +.|..+.+
T Consensus       348 ~~v~~l~v  355 (398)
T KOG0771|consen  348 AAVTKLAV  355 (398)
T ss_pred             eeEEEEee
Confidence            99985543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.3e-12  Score=145.55  Aligned_cols=212  Identities=12%  Similarity=0.117  Sum_probs=145.7

Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF  555 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~  555 (707)
                      .+.+|+..+.....+..+...+.+.+|+|+|+.|+..+.......|.+|++.++... ......+.+..++|+|+|+.|+
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEE
Confidence            455566555544455566778999999999999998775444568999999887653 2224445566789999999888


Q ss_pred             EEe--CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-Cc--EEEEECCCCCcceEEeecCCCCEEE
Q 005235          556 VST--KK--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-GK--LCWFDMDLSSKPYRVLKCHPKDITN  628 (707)
Q Consensus       556 v~s--dg--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g~--I~vwDl~~~~~~~~~l~~h~~~I~~  628 (707)
                      ...  ++  .|++||+.+++.. .+..+...+...+|+|+|+.|+..+.+ +.  |+++|+..+  ....+..+......
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g--~~~~lt~~~~~~~~  335 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG--APQRITWEGSQNQD  335 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC--CeEEeecCCCCccC
Confidence            653  33  5999999887654 444444567889999999999887764 34  555566544  24455545555678


Q ss_pred             EEEcCCCCEEEEEeCC-C--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc---E
Q 005235          629 VAFHRSYPLFASCSDD-C--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV---I  702 (707)
Q Consensus       629 vafspdg~llaSgs~D-g--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~---I  702 (707)
                      ++|+|+|++|+..+.+ +  .|.+|+      +.++.    ...+.... .    .....|+|||.+|+.++.++.   +
T Consensus       336 ~~~SpDG~~Ia~~~~~~g~~~I~~~d------l~~g~----~~~Lt~~~-~----~~~p~~SpDG~~i~~~s~~~~~~~l  400 (429)
T PRK03629        336 ADVSSDGKFMVMVSSNGGQQHIAKQD------LATGG----VQVLTDTF-L----DETPSIAPNGTMVIYSSSQGMGSVL  400 (429)
T ss_pred             EEECCCCCEEEEEEccCCCceEEEEE------CCCCC----eEEeCCCC-C----CCCceECCCCCEEEEEEcCCCceEE
Confidence            9999999988776543 3  467774      33332    23333221 1    456789999999999888765   4


Q ss_pred             EEEe
Q 005235          703 RLYC  706 (707)
Q Consensus       703 rlWd  706 (707)
                      .+++
T Consensus       401 ~~~~  404 (429)
T PRK03629        401 NLVS  404 (429)
T ss_pred             EEEE
Confidence            5554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.55  E-value=2e-14  Score=158.83  Aligned_cols=258  Identities=16%  Similarity=0.189  Sum_probs=200.9

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKD  460 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~  460 (707)
                      |...+.++++|++|..|+||...++.|+....+ .+.|+.++.+.+. ..+++++.|..|++|.+..+.+  .+.+|+..
T Consensus       198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga  276 (1113)
T KOG0644|consen  198 FDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA  276 (1113)
T ss_pred             eccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCCCchHHHHhccccc
Confidence            557788999999999999999999999999998 8899999999887 4677788889999999999876  68899999


Q ss_pred             eeeeccc-ccccCCCCcEEEEecCCccceE-----EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee
Q 005235          461 LLHVETP-TAPDDNMASIVSWLQHDKLDGI-----RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI  534 (707)
Q Consensus       461 v~~~~~~-~~~~~~d~~i~iW~~~~~~~~~-----~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~  534 (707)
                      +.+++|+ .++.+.+|++++|+..-.....     .......+.++.|...|..++|++.++   .-..|.+.....   
T Consensus       277 vtaiafsP~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~---ea~n~e~~~l~~---  350 (1113)
T KOG0644|consen  277 VTAIAFSPRASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG---EARNHEFEQLAW---  350 (1113)
T ss_pred             eeeeccCccccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc---ccccchhhHhhh---
Confidence            9999998 7788899999999986211111     112345677888888999999999988   666666532211   


Q ss_pred             eeccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE-EEEEECCCcEEEEECCC
Q 005235          535 PFKLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDN-LIVGSREGKLCWFDMDL  611 (707)
Q Consensus       535 ~~~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~-L~sGs~Dg~I~vwDl~~  611 (707)
                         +...+.-+.++.+- .+.+++- +-.+++|++.++.+++.+.+|...+..|.+||-... ..++++||...|||+-.
T Consensus       351 ---~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e  427 (1113)
T KOG0644|consen  351 ---RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE  427 (1113)
T ss_pred             ---hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence               11122222222232 2333443 788999999999999999999999999999997754 46789999999999987


Q ss_pred             CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          612 SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       612 ~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      + .+++...-....+...+||++|..++...+-|.++|+..
T Consensus       428 g-~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  428 G-IPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             C-CcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence            7 555554433456778899999999988888899998843

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.55  E-value=5e-13  Score=153.45  Aligned_cols=311  Identities=14%  Similarity=0.129  Sum_probs=192.1

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCC-------CeEEEEEe-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC--Cch
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVES-------GRCLRVLE-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG--NEE  453 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~t-------g~~l~~l~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~--~~~  453 (707)
                      .+....+++|||.||+|++|+...       .++..++. .++.+.++..++.++ .+++++.||.|.+..++..  ...
T Consensus      1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~ 1135 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKR 1135 (1431)
T ss_pred             cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccc
Confidence            445567999999999999999752       24455565 388999999999995 7888899999999998762  110


Q ss_pred             hc--------ccccceeeec-cc-------ccccCCCCcEEEEecCCccceE---EeccCCCeEEEEEcCCCCEEEEEeC
Q 005235          454 EQ--------RRVKDLLHVE-TP-------TAPDDNMASIVSWLQHDKLDGI---RLRHFKMVSSVEWHRRGDYLSTVMP  514 (707)
Q Consensus       454 ~~--------~~~~~v~~~~-~~-------~~~~~~d~~i~iW~~~~~~~~~---~~~h~~~V~~v~~sp~g~~lat~s~  514 (707)
                      ..        ...+.+.++. |.       ++.+..-+.+..|+........   .....+.|++++.+|.+++++.|..
T Consensus      1136 ~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts 1215 (1431)
T KOG1240|consen 1136 VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS 1215 (1431)
T ss_pred             eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecC
Confidence            00        0111122211 11       3445566778888876544322   2234578999999999999999999


Q ss_pred             CCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCC---EEEEEe---CCeEEEEECCCCeEEEEEeCCC-C----
Q 005235          515 AGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRS---IFFVST---KKNIRVYDLLKQRLIKKLETGL-K----  581 (707)
Q Consensus       515 dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~---~l~v~s---dg~I~iwDl~~~~~~~~l~~~~-~----  581 (707)
                      .|   .+.+||++-+... ...  .+..++..|..+|..+   ..++++   .+.|.+|++.+|.+..++-... .    
T Consensus      1216 ~G---~l~lWDLRF~~~i-~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls 1291 (1431)
T KOG1240|consen 1216 RG---QLVLWDLRFRVPI-LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILS 1291 (1431)
T ss_pred             Cc---eEEEEEeecCcee-ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchh
Confidence            88   9999999987665 444  6668888888887544   444443   4889999999986666654331 0    


Q ss_pred             --------------CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235          582 --------------EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTA  647 (707)
Q Consensus       582 --------------~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I  647 (707)
                                    ......+.-.+..+++|+.|..|+.||.......-....+.........++-+ .-++.++.  .|
T Consensus      1292 ~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~--~i 1368 (1431)
T KOG1240|consen 1292 YALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQ--FI 1368 (1431)
T ss_pred             hhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCc--cc
Confidence                          01122233345688999999999999997653321122222222322322221 11222221  11


Q ss_pred             EEE--ecccccCC-----CCCCcccceEEeeCCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEe
Q 005235          648 YVF--HGMVYSDL-----NQNPLIVPLEILRGHTSSNGRGVMDCKFHPR-QPWLFTAGADSVIRLYC  706 (707)
Q Consensus       648 ~Vw--d~~~~~Dl-----~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd-g~~L~s~g~Dg~IrlWd  706 (707)
                      ..+  .-....+.     .......+...-..|...    |+++++... +++|++++.||.|+||.
T Consensus      1369 ~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~----Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1369 DEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDP----ITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhhhhhhhhcCchhhcccccccccCCCCCcccccch----hhhhhhhccCccEEEEecCCCeeeecC
Confidence            111  00000000     000011112223456665    999987653 57899999999999994

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.4e-12  Score=145.55  Aligned_cols=234  Identities=12%  Similarity=0.175  Sum_probs=152.9

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235          398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM  474 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d  474 (707)
                      ..|.+||...+.......+...+.+++|+|||+ .|+.++..   ..|.+|++.++..                      
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~----------------------  240 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQR----------------------  240 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCE----------------------
Confidence            469999986444433334467899999999994 55555532   3577777654421                      


Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEE-eCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTV-MPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS  552 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~-s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~  552 (707)
                                   ..+..+.+...+++|+|+|+.|+.. +.++ ...|.+|++.++...  .+ .+.+....++|+|+++
T Consensus       241 -------------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-~~~Iy~~d~~~g~~~--~lt~~~~~~~~~~~spDG~  304 (433)
T PRK04922        241 -------------ELVASFRGINGAPSFSPDGRRLALTLSRDG-NPEIYVMDLGSRQLT--RLTNHFGIDTEPTWAPDGK  304 (433)
T ss_pred             -------------EEeccCCCCccCceECCCCCEEEEEEeCCC-CceEEEEECCCCCeE--ECccCCCCccceEECCCCC
Confidence                         1222334445678999999988654 4444 458999999887653  44 5555567889999999


Q ss_pred             EEEEEeC--C--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCCCcceEEeecCCCC
Q 005235          553 IFFVSTK--K--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG---KLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       553 ~l~v~sd--g--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      .|+.+++  +  .|.++|+.+++.. .+..+.....+++|+|+|++|+..+.++   .|.+||+.++ .+ ..+. +...
T Consensus       305 ~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~~-~~Lt-~~~~  380 (433)
T PRK04922        305 SIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-SV-RTLT-PGSL  380 (433)
T ss_pred             EEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC-Ce-EECC-CCCC
Confidence            8887763  3  4777788776543 3333334456789999999998876543   5999999765 33 3443 3334


Q ss_pred             EEEEEEcCCCCEEEEEeCC-C--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235          626 ITNVAFHRSYPLFASCSDD-C--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       626 I~~vafspdg~llaSgs~D-g--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp  688 (707)
                      ...+.|+|+|++|+..+.+ +  .|.+++      +... .   ...+..+.+.    +..++|+|
T Consensus       381 ~~~p~~spdG~~i~~~s~~~g~~~L~~~~------~~g~-~---~~~l~~~~g~----~~~p~wsp  432 (433)
T PRK04922        381 DESPSFAPNGSMVLYATREGGRGVLAAVS------TDGR-V---RQRLVSADGE----VREPAWSP  432 (433)
T ss_pred             CCCceECCCCCEEEEEEecCCceEEEEEE------CCCC-c---eEEcccCCCC----CCCCccCC
Confidence            5678999999987766653 3  455553      3221 1   3444444443    77788887

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.54  E-value=5.2e-13  Score=149.32  Aligned_cols=249  Identities=15%  Similarity=0.159  Sum_probs=177.3

Q ss_pred             CCcccCCCCcEEEEEeCCCcEEEEeCCCCeE--EE-----EEecCCcEEEEEEccCCC-ccEEEEEeCCeEEEEECCCCC
Q 005235          380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRC--LR-----VLEIGEAIQYVAWNPLPE-LPVLAVSVGQDVLILNTGLGN  451 (707)
Q Consensus       380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~--l~-----~l~~~~~V~~v~~spdg~-~~lla~s~d~~V~lwd~~~~~  451 (707)
                      .+...|.+.++++.|..+|.|.+||+..+..  ..     .-.+..+|..+.|..+.. ..+++++.||.|..|++..-.
T Consensus       247 ~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~  326 (555)
T KOG1587|consen  247 CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLS  326 (555)
T ss_pred             EEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccc
Confidence            3445577788999999999999999987654  22     222378999999977541 249999999999999865432


Q ss_pred             chhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCc
Q 005235          452 EEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKL  530 (707)
Q Consensus       452 ~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~  530 (707)
                      ..........                      .........-...+++++|.+. -..|++|+..|   .|.--.-....
T Consensus       327 ~P~e~~~~~~----------------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G---~v~~~~r~g~~  381 (555)
T KOG1587|consen  327 LPVEGLLLES----------------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG---KVYKGCRKGYT  381 (555)
T ss_pred             cchhhccccc----------------------ccccccccccccceeeEeeccCCCceEEEEcCCc---EEEEEeccCCc
Confidence            2111000000                      0000011123456789999884 45678888877   55553332222


Q ss_pred             eee-------eee-ccCCCeEEEEEeCCCCEEEEE-eCCeEEEEECC-CCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEE
Q 005235          531 SHR-------IPF-KLHGLPVSSVFHPTRSIFFVS-TKKNIRVYDLL-KQRLIKKLETGLKEVSSIAIHPAG-DNLIVGS  599 (707)
Q Consensus       531 ~~~-------~~~-~~~~~V~~v~fspd~~~l~v~-sdg~I~iwDl~-~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs  599 (707)
                      ...       ..+ .|.+.|.++.++|-+..++.+ +|.+|+||... ...++..+..+...+++++|||.. ..|+++.
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d  461 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD  461 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence            221       233 788999999999987665554 49999999987 667777777777789999999976 5678888


Q ss_pred             CCCcEEEEECCCC-CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          600 REGKLCWFDMDLS-SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       600 ~Dg~I~vwDl~~~-~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .||.|.+||+... ..|+.+...+....+.+.|++.|++|+.|...|+|++|++.
T Consensus       462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            8999999999653 25666666667778889999999999999999999999653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=4.7e-14  Score=148.24  Aligned_cols=276  Identities=16%  Similarity=0.207  Sum_probs=199.5

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      -|...+..+++||+|..|.+||+.++.....+..  ...|..-.|-|. +...+++++.||.|++=.+...         
T Consensus       149 ~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t---------  219 (559)
T KOG1334|consen  149 HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET---------  219 (559)
T ss_pred             eecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc---------
Confidence            4888899999999999999999999988877766  445555556664 2247888899999887543221         


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee--
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF--  536 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--  536 (707)
                                 +...++           ..+..|.+.|..++.-|.. .-|.+++.|+   .+.-.|++..... ..+  
T Consensus       220 -----------~~~e~t-----------~rl~~h~g~vhklav~p~sp~~f~S~geD~---~v~~~Dlr~~~pa-~~~~c  273 (559)
T KOG1334|consen  220 -----------GYVENT-----------KRLAPHEGPVHKLAVEPDSPKPFLSCGEDA---VVFHIDLRQDVPA-EKFVC  273 (559)
T ss_pred             -----------cceecc-----------eecccccCccceeeecCCCCCccccccccc---ceeeeeeccCCcc-ceeee
Confidence                       001111           1245899999999998865 4588888888   8988998877654 333  


Q ss_pred             --ccCC---CeEEEEEeCCCC-EEEEEe-CCeEEEEECCCC------eEEEEEeCC------CCCeEEEEEcCCCCEEEE
Q 005235          537 --KLHG---LPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQ------RLIKKLETG------LKEVSSIAIHPAGDNLIV  597 (707)
Q Consensus       537 --~~~~---~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~------~~~~~l~~~------~~~I~sl~~spdg~~L~s  597 (707)
                        ....   ....++.+|... .+++++ |..+++||.+.-      ..+.++..+      .-.|+|++|+.+|.-|++
T Consensus       274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa  353 (559)
T KOG1334|consen  274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA  353 (559)
T ss_pred             eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence              2222   456888899776 577776 899999998642      123333322      234999999988877777


Q ss_pred             EECCCcEEEEECCCCC-----------cceE-EeecCCC--CEEEEEE-cCCCCEEEEEeCCCcEEEEecccccCCCCCC
Q 005235          598 GSREGKLCWFDMDLSS-----------KPYR-VLKCHPK--DITNVAF-HRSYPLFASCSDDCTAYVFHGMVYSDLNQNP  662 (707)
Q Consensus       598 Gs~Dg~I~vwDl~~~~-----------~~~~-~l~~h~~--~I~~vaf-spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~  662 (707)
                      .-.|-.|++|.-..+.           ..++ .+++|..  .|..|-| -|...+++|||+-|.|.||      +-.++.
T Consensus       354 SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW------~K~t~e  427 (559)
T KOG1334|consen  354 SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIW------DKKTGE  427 (559)
T ss_pred             eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEE------ecchhH
Confidence            7778889999544321           1122 3678864  4777765 6788899999999999999      444444


Q ss_pred             cccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          663 LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       663 ~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .   +..+.|....    |+||.=||.-+.|||+|-|.-|+||.
T Consensus       428 i---i~~MegDr~V----VNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  428 I---IRFMEGDRHV----VNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             H---HHHhhcccce----EeccCCCCCCchhhccCCccceeeec
Confidence            4   4555665555    99999999999999999999999995

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.53  E-value=2.5e-13  Score=140.12  Aligned_cols=168  Identities=14%  Similarity=0.172  Sum_probs=137.9

Q ss_pred             cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235          416 IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK  495 (707)
Q Consensus       416 ~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~  495 (707)
                      ...+|.++.|.++....+++++.|..|++|-+..+...                  ..+..|.       ....+..|..
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------------------~~~~~V~-------y~s~Ls~H~~   66 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------------------GGDMKVE-------YLSSLSRHTR   66 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCC------------------CCceeEE-------EeecccCCcc
Confidence            46789999999988547889999999999998765321                  1111111       1234678999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECC--------C-----C-ce-eeeee-ccCCCeEEEEEeCCCCEEEEEe-
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS--------K-----K-LS-HRIPF-KLHGLPVSSVFHPTRSIFFVST-  558 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~--------~-----~-~~-~~~~~-~~~~~V~~v~fspd~~~l~v~s-  558 (707)
                      .|++|.|+|+|+.||+|+.+|   .|.+|...        +     . .. ....+ .|...|..++|+|++.++++++ 
T Consensus        67 aVN~vRf~p~gelLASg~D~g---~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~  143 (434)
T KOG1009|consen   67 AVNVVRFSPDGELLASGGDGG---EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV  143 (434)
T ss_pred             eeEEEEEcCCcCeeeecCCCc---eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec
Confidence            999999999999999999988   99999876        2     1 11 11334 7888999999999999999999 


Q ss_pred             CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235          559 KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       559 dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~  611 (707)
                      |+.+++||+..|.+...+..|...+..++|.|-+.++++-+.|...+.+++..
T Consensus       144 dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  144 DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence            99999999999999999999999999999999999999999999888887754

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.53  E-value=3.7e-13  Score=142.94  Aligned_cols=167  Identities=19%  Similarity=0.222  Sum_probs=125.2

Q ss_pred             CCCCEEEEEeCCCCccEEEEEECCCCceeeeee-----ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC-------
Q 005235          504 RRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK-------  569 (707)
Q Consensus       504 p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~-------  569 (707)
                      +.|--++.+-..|   .|.+.|....... ..|     -.+..|+|+.|-|.+..++.+.  +|.+.+||..-       
T Consensus       183 ~~g~dllIGf~tG---qvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p  258 (636)
T KOG2394|consen  183 PKGLDLLIGFTTG---QVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP  258 (636)
T ss_pred             CCCcceEEeeccC---ceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence            4566667777666   7777776553222 222     2347899999999766555443  89999997621       


Q ss_pred             -------Ce--------------EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEE
Q 005235          570 -------QR--------------LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITN  628 (707)
Q Consensus       570 -------~~--------------~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~  628 (707)
                             +.              ++..+.-..+.|..++|+|||.+||+.|.||.++|||..+. .++..++..-+...|
T Consensus       259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLC  337 (636)
T KOG2394|consen  259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLC  337 (636)
T ss_pred             cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEE
Confidence                   11              11222223456889999999999999999999999999876 667777777788999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235          629 VAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       629 vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp  688 (707)
                      |+|||||++|++|+.|--|.||      .+.....   +..-.||..+    |..|+|.|
T Consensus       338 vcWSPDGKyIvtGGEDDLVtVw------Sf~erRV---VARGqGHkSW----Vs~VaFDp  384 (636)
T KOG2394|consen  338 VCWSPDGKYIVTGGEDDLVTVW------SFEERRV---VARGQGHKSW----VSVVAFDP  384 (636)
T ss_pred             EEEcCCccEEEecCCcceEEEE------EeccceE---EEeccccccc----eeeEeecc
Confidence            9999999999999999999999      4444444   7777899998    99999983

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.52  E-value=4e-13  Score=134.96  Aligned_cols=209  Identities=15%  Similarity=0.196  Sum_probs=160.2

Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235          493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL  568 (707)
Q Consensus       493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~  568 (707)
                      ...+|+|.+|++++..+|++..+.   .|.||.......-  ..++ .|...|+++.|+|..+.|++++ |+.-++|...
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~---evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNH---EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCc---eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            457899999999999999998866   9999998877632  1556 8999999999999999999988 9999999984


Q ss_pred             C-C--eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc---ceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235          569 K-Q--RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK---PYRVLKCHPKDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       569 ~-~--~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~---~~~~l~~h~~~I~~vafspdg~llaSgs  642 (707)
                      . +  ++.-.|..+....+++.|+|.++.||+||..+.|.||-++..+.   ...+-+.+...|+++.|||++-+||+||
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            3 3  44445666778899999999999999999999999998875421   1122335678899999999999999999


Q ss_pred             CCCcEEEEecccccCCCCCCccc------ceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          643 DDCTAYVFHGMVYSDLNQNPLIV------PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       643 ~Dg~I~Vwd~~~~~Dl~~~~~~~------pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      .|+..+||.+-+. ++.+.+...      |...|-..-...+.+|..+.|+|.|..|+-.+.|++|.+=
T Consensus       166 ~D~k~rVfSayIK-~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  166 TDGKCRVFSAYIK-GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             cCcceeEEEEeee-ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            9999999965422 222222111      1222211111223459999999999999999999998763

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=7.6e-12  Score=139.88  Aligned_cols=204  Identities=12%  Similarity=0.125  Sum_probs=140.3

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235          398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM  474 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d  474 (707)
                      ..|.+||...+.......+...+.+++|+|||+ .|+.++.   +..|.+|++.++.                       
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~-----------------------  237 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQ-----------------------  237 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCc-----------------------
Confidence            378889975544433334477899999999994 5555543   3467777765542                       


Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI  553 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~  553 (707)
                                  ...+..+.+.+.+.+|+|+|+.|+..........|.++++.++...  .+ .+.+......|+|+|..
T Consensus       238 ------------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~--~Lt~~~~~~~~~~~spDG~~  303 (435)
T PRK05137        238 ------------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT--RLTDSPAIDTSPSYSPDGSQ  303 (435)
T ss_pred             ------------EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE--EccCCCCccCceeEcCCCCE
Confidence                        1223345566778899999998875543332457888899887653  45 55566778999999998


Q ss_pred             EEEEeC----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeecCCCCE
Q 005235          554 FFVSTK----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKCHPKDI  626 (707)
Q Consensus       554 l~v~sd----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~h~~~I  626 (707)
                      |+.+++    ..|.++|+..+.. +.+..+...+....|+|+|+.|+..+.+   ..|.+||+..+  ....+. ....+
T Consensus       304 i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~--~~~~lt-~~~~~  379 (435)
T PRK05137        304 IVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS--GERILT-SGFLV  379 (435)
T ss_pred             EEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC--ceEecc-CCCCC
Confidence            887663    3688889876654 3444444557778999999999887654   35888888644  234443 23357


Q ss_pred             EEEEEcCCCCEEEEEeC
Q 005235          627 TNVAFHRSYPLFASCSD  643 (707)
Q Consensus       627 ~~vafspdg~llaSgs~  643 (707)
                      ..+.|+|+|+.|+..+.
T Consensus       380 ~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        380 EGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             CCCeECCCCCEEEEEEc
Confidence            78999999998776554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.5e-12  Score=143.66  Aligned_cols=211  Identities=15%  Similarity=0.147  Sum_probs=144.1

Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF  554 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l  554 (707)
                      .+.+|+..+.....+..+...+.+.+|+|+|++|+.++..+....|.+|++.++...  .+ ...+...++.|+|+|+.|
T Consensus       185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--~l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--LVASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--EeccCCCCccCceECCCCCEE
Confidence            355566555444455667778999999999999999886654568999999887653  33 445566688999999987


Q ss_pred             EEE-e-CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCc--EEEEECCCCCcceEEeecCCCCEE
Q 005235          555 FVS-T-KK--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EGK--LCWFDMDLSSKPYRVLKCHPKDIT  627 (707)
Q Consensus       555 ~v~-s-dg--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg~--I~vwDl~~~~~~~~~l~~h~~~I~  627 (707)
                      +.+ + ++  .|++||+.+++. ..+..+.....+++|+|+|+.|+.++. +|.  |+++|+.++ . .+.+..+.....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g-~-~~~lt~~g~~~~  339 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG-S-AERLTFQGNYNA  339 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-eEEeecCCCCcc
Confidence            654 3 43  699999988764 345555455678899999999988764 444  666676654 2 333443444456


Q ss_pred             EEEEcCCCCEEEEEeCCC---cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC-C--c
Q 005235          628 NVAFHRSYPLFASCSDDC---TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD-S--V  701 (707)
Q Consensus       628 ~vafspdg~llaSgs~Dg---~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D-g--~  701 (707)
                      .++|||+|+.|+..+.++   .|.+|+.      .++.    ...+... ..    ...+.|+|+|++|+.++.+ +  .
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~------~~g~----~~~Lt~~-~~----~~~p~~spdG~~i~~~s~~~g~~~  404 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDL------STGS----VRTLTPG-SL----DESPSFAPNGSMVLYATREGGRGV  404 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEEC------CCCC----eEECCCC-CC----CCCceECCCCCEEEEEEecCCceE
Confidence            789999999888765443   5888853      3332    2233322 12    5567999999988766643 3  4


Q ss_pred             EEEEe
Q 005235          702 IRLYC  706 (707)
Q Consensus       702 IrlWd  706 (707)
                      |.+++
T Consensus       405 L~~~~  409 (433)
T PRK04922        405 LAAVS  409 (433)
T ss_pred             EEEEE
Confidence            55554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=4.5e-12  Score=141.70  Aligned_cols=203  Identities=14%  Similarity=0.118  Sum_probs=144.3

Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF  554 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l  554 (707)
                      .+.+|+..+.....+..|...+.+.+|+|+|+.|+.++..+....|.+|++.++...  .+ ...+.+.+.+|+|+|..|
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--EeecCCCcccCcEECCCCCEE
Confidence            455666655555556678889999999999999999886554569999999887653  44 566677889999999987


Q ss_pred             EEE-e-C--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCCcceEEeecCCCCEE
Q 005235          555 FVS-T-K--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EG--KLCWFDMDLSSKPYRVLKCHPKDIT  627 (707)
Q Consensus       555 ~v~-s-d--g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg--~I~vwDl~~~~~~~~~l~~h~~~I~  627 (707)
                      +.+ + +  ..|.+||+.++.. ..+..+.....+.+|+|+|+.|+..+. +|  .|+++|+..+ . .+.+..+...+.
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~-~~~lt~~~~~~~  337 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-N-PRRISFGGGRYS  337 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-C-eEEeecCCCccc
Confidence            654 3 4  4588889987765 456556556778999999999988774 33  5888887654 3 445554556677


Q ss_pred             EEEEcCCCCEEEEEeCC-C--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          628 NVAFHRSYPLFASCSDD-C--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       628 ~vafspdg~llaSgs~D-g--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                      .+.|+|+|+.|+..+.+ +  .|.+|+      +....    ...+.. ...    +..+.|+|+|++|+..+.
T Consensus       338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d------~~~~~----~~~lt~-~~~----~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGGGQFSIGVMK------PDGSG----ERILTS-GFL----VEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             CeEECCCCCEEEEEEcCCCceEEEEEE------CCCCc----eEeccC-CCC----CCCCeECCCCCEEEEEEc
Confidence            88999999998877644 2  466664      32222    222321 112    677899999999876654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1.4e-11  Score=119.47  Aligned_cols=269  Identities=14%  Similarity=0.143  Sum_probs=183.2

Q ss_pred             CCcEEEEEeCCCcEEEEeCCC---------Ce-EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235          387 ACYLEYKGSTDGTVRIWEVES---------GR-CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~t---------g~-~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~  455 (707)
                      ...+++.|+.+|+|.+..+.+         |+ .+...+. +++|..++|..+    ++.++.||.|+-|........  
T Consensus        21 ~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~gdG~V~gw~W~E~~es--   94 (325)
T KOG0649|consen   21 SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGGDGLVYGWEWNEEEES--   94 (325)
T ss_pred             cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeeccCceEEEeeehhhhhh--
Confidence            345899999999999998753         22 2223333 899999999933    455566699999987654221  


Q ss_pred             ccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235          456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP  535 (707)
Q Consensus       456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~  535 (707)
                                        .+.-.+|.+......- .-.--.|+++...|..+-+++++.|+   .++-||+.+++.+ +.
T Consensus        95 ------------------~~~K~lwe~~~P~~~~-~~evPeINam~ldP~enSi~~AgGD~---~~y~~dlE~G~i~-r~  151 (325)
T KOG0649|consen   95 ------------------LATKRLWEVKIPMQVD-AVEVPEINAMWLDPSENSILFAGGDG---VIYQVDLEDGRIQ-RE  151 (325)
T ss_pred             ------------------ccchhhhhhcCccccC-cccCCccceeEeccCCCcEEEecCCe---EEEEEEecCCEEE-EE
Confidence                              1222345433221110 11123678899999888787777777   9999999999999 99


Q ss_pred             e-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC----------CCCeEEEEEcCCCCEEEEEECCCc
Q 005235          536 F-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG----------LKEVSSIAIHPAGDNLIVGSREGK  603 (707)
Q Consensus       536 ~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~----------~~~I~sl~~spdg~~L~sGs~Dg~  603 (707)
                      | +|..-|.+++--.....+++|+ ||++|+||+++++.++.+...          ..||.+++.+  .+.|++|+. ..
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~  228 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PK  228 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-Cc
Confidence            9 9999999999866666788877 999999999999998887531          2567777775  568888764 57


Q ss_pred             EEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE
Q 005235          604 LCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD  683 (707)
Q Consensus       604 I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~  683 (707)
                      +.+|.++.. .+..++. -.+.+..|.|-.  ..+++++....|.-|...       +.+  ....--+|.     +.++
T Consensus       229 lslwhLrss-e~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-------Gvl--~a~ip~~s~-----~c~s  290 (325)
T KOG0649|consen  229 LSLWHLRSS-ESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLN-------GVL--QANIPVEST-----ACYS  290 (325)
T ss_pred             eeEEeccCC-CceEEEe-cccceeEeeeec--ceEEEeccccceeeeeec-------cEE--EEeccCCcc-----ceee
Confidence            999999976 6676665 356688888853  467778877788888321       100  011111222     2555


Q ss_pred             EEEcCC-CCEEEEEeCCCcEEEE
Q 005235          684 CKFHPR-QPWLFTAGADSVIRLY  705 (707)
Q Consensus       684 l~fspd-g~~L~s~g~Dg~IrlW  705 (707)
                      ..|+-. -++|-.+|..+.+.|+
T Consensus       291 ~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  291 ASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ecccCCceEEEEecccceeeeee
Confidence            555432 2355666777777665

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.50  E-value=1.9e-12  Score=130.09  Aligned_cols=202  Identities=17%  Similarity=0.172  Sum_probs=153.8

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .++|+|.+|++|+ ..++++.....|.||.......                           |.    ....+..|...
T Consensus        10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~---------------------------w~----~~htls~Hd~~   57 (361)
T KOG1523|consen   10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADL---------------------------WE----PAHTLSEHDKI   57 (361)
T ss_pred             cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCC---------------------------ce----eceehhhhCcc
Confidence            6899999999999 3555556666899888654321                           10    11235689999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-Cceee-eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-KLSHR-IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRL  572 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-~~~~~-~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~  572 (707)
                      |+.|+|+|.++.|++++.|.   .-++|.... +.-.. ..+ .++..+++|.|+|..+.|++|+ .+.|.||-+....-
T Consensus        58 vtgvdWap~snrIvtcs~dr---nayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd  134 (361)
T KOG1523|consen   58 VTGVDWAPKSNRIVTCSHDR---NAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND  134 (361)
T ss_pred             eeEEeecCCCCceeEccCCC---CccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc
Confidence            99999999999999999987   889999943 33321 233 8999999999999999999998 68888887765421


Q ss_pred             E----EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC-----CC--------C----cceEEeecCCCCEEEEEE
Q 005235          573 I----KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD-----LS--------S----KPYRVLKCHPKDITNVAF  631 (707)
Q Consensus       573 ~----~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~-----~~--------~----~~~~~l~~h~~~I~~vaf  631 (707)
                      -    ..-..+...|++++|||++-+|++||.|+.++||..-     ..        .    .++..+....+.|..+.|
T Consensus       135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f  214 (361)
T KOG1523|consen  135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF  214 (361)
T ss_pred             eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence            1    1112445679999999999999999999999999742     10        0    122333345678999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecc
Q 005235          632 HRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       632 spdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      +|+|..||-.+.|++|.+-|..
T Consensus       215 s~sG~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  215 SPSGNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             CCCCCEeeEecCCCceEEeecC
Confidence            9999999999999999998654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.50  E-value=5.7e-13  Score=141.21  Aligned_cols=208  Identities=14%  Similarity=0.161  Sum_probs=163.3

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      ...++.++.||.+.|-+ ..|+.-+.+.. .+.|.|-.|+|+| .-|++++.||.|++|.-.                  
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs------------------  134 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS------------------  134 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEecc------------------
Confidence            35677889999998887 45666666665 7899999999999 579999999998888722                  


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS  545 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v  545 (707)
                                       +-....+.....+|.|++|.|+.+-++.+..+    .+.|--+...... ... .|.+-|.++
T Consensus       135 -----------------GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~----h~~IKpL~~n~k~-i~WkAHDGiiL~~  192 (737)
T KOG1524|consen  135 -----------------GMLRSTVVQNEESIRCARWAPNSNSIVFCQGG----HISIKPLAANSKI-IRWRAHDGLVLSL  192 (737)
T ss_pred             -----------------chHHHHHhhcCceeEEEEECCCCCceEEecCC----eEEEeecccccce-eEEeccCcEEEEe
Confidence                             11222344567889999999998877666532    7888777766554 555 899999999


Q ss_pred             EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235          546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK  624 (707)
Q Consensus       546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~  624 (707)
                      .|++...++++|+ |-..+|||-. |+.+..-..|..+|++++|.|+ ..+++||+. ++++   .         ....+
T Consensus       193 ~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~---~---------~p~~G  257 (737)
T KOG1524|consen  193 SWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF---S---------SPRVG  257 (737)
T ss_pred             ecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eeee---c---------CCCcc
Confidence            9999999999999 8999999965 6667677788899999999999 777888764 4441   1         12357


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          625 DITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      .|..++||+||..++.|+..|.+.+=++
T Consensus       258 SifnlsWS~DGTQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  258 SIFNLSWSADGTQATCGTSTGQLIVAYA  285 (737)
T ss_pred             ceEEEEEcCCCceeeccccCceEEEeee
Confidence            7999999999999999999998776554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=2.8e-12  Score=142.89  Aligned_cols=207  Identities=14%  Similarity=0.145  Sum_probs=138.2

Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF  554 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l  554 (707)
                      .+.+++..+.....+..+...+.+.+|+|+|+.|+.++.......|.+||+.++...  .+ ...+.+.+.+|+|+|..|
T Consensus       177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCCEE
Confidence            344555544444445567788999999999999998886554568999999988654  34 455667789999999988


Q ss_pred             EEE-e-CCeEEE--EECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCcceEEeecCCCCEEEE
Q 005235          555 FVS-T-KKNIRV--YDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSSKPYRVLKCHPKDITNV  629 (707)
Q Consensus       555 ~v~-s-dg~I~i--wDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~~~~~~l~~h~~~I~~v  629 (707)
                      +.+ + ++...|  +|+..+. ...+..+.....+.+|+|||+.|+..+. +|...||.++........+..+.......
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~  333 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSP  333 (427)
T ss_pred             EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCce
Confidence            754 4 565454  4555544 4555555555678899999999887665 45666665543222233333333445568


Q ss_pred             EEcCCCCEEEEEeCCC---cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          630 AFHRSYPLFASCSDDC---TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       630 afspdg~llaSgs~Dg---~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                      +|||+|++|+.++.++   .|.+|++      .++.    ...+..+. .    ...+.|+|+|+.|+.++.++
T Consensus       334 ~~SpDG~~Ia~~s~~~g~~~I~v~d~------~~g~----~~~lt~~~-~----~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        334 RISPDGKLLAYISRVGGAFKLYVQDL------ATGQ----VTALTDTT-R----DESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             EECCCCCEEEEEEccCCcEEEEEEEC------CCCC----eEEccCCC-C----ccCceECCCCCEEEEEEecC
Confidence            9999999998777654   5888854      3332    22333221 2    56789999999987776544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=4.9e-12  Score=140.92  Aligned_cols=236  Identities=16%  Similarity=0.159  Sum_probs=146.8

Q ss_pred             CcEEEEeCCCCeEEEEE-ecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235          398 GTVRIWEVESGRCLRVL-EIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN  473 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l-~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~  473 (707)
                      ..|.+||.. |...+.+ .....+.+.+|+|||. .|+.++..   ..|.+||+.++..                     
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~---------------------  232 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRR---------------------  232 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCE---------------------
Confidence            457777764 4443333 4477899999999994 55555432   3477777655421                     


Q ss_pred             CCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEE-eCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCC
Q 005235          474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTV-MPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTR  551 (707)
Q Consensus       474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~-s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~  551 (707)
                                    ..+....+.+.+.+|+|+|+.|+.. +.++ ...|.++++..+..  ..+ .+.+......|+|+|
T Consensus       233 --------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpDG  295 (427)
T PRK02889        233 --------------RVVANFKGSNSAPAWSPDGRTLAVALSRDG-NSQIYTVNADGSGL--RRLTQSSGIDTEPFFSPDG  295 (427)
T ss_pred             --------------EEeecCCCCccceEECCCCCEEEEEEccCC-CceEEEEECCCCCc--EECCCCCCCCcCeEEcCCC
Confidence                          1222334556789999999988754 5555 34566666665543  445 555566778999999


Q ss_pred             CEEEEEe--CCeEEEE--ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCCCcceEEeecCCC
Q 005235          552 SIFFVST--KKNIRVY--DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG---KLCWFDMDLSSKPYRVLKCHPK  624 (707)
Q Consensus       552 ~~l~v~s--dg~I~iw--Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---~I~vwDl~~~~~~~~~l~~h~~  624 (707)
                      +.|+..+  ++...||  ++.++... .+..........+|+|+|++|+..+.++   .|.+||+.++ . .+.+..+ .
T Consensus       296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-~-~~~lt~~-~  371 (427)
T PRK02889        296 RSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG-Q-VTALTDT-T  371 (427)
T ss_pred             CEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC-C-eEEccCC-C
Confidence            9887666  3555555  44555432 2322223455689999999998877654   5999999876 3 3344322 3


Q ss_pred             CEEEEEEcCCCCEEEEEeCCC-cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          625 DITNVAFHRSYPLFASCSDDC-TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg-~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      ....++|+|+|+.|+.++.++ .-.++-+    ++. +..   ...+..+.+.    +...+|+|-
T Consensus       372 ~~~~p~~spdg~~l~~~~~~~g~~~l~~~----~~~-g~~---~~~l~~~~g~----~~~p~wsp~  425 (427)
T PRK02889        372 RDESPSFAPNGRYILYATQQGGRSVLAAV----SSD-GRI---KQRLSVQGGD----VREPSWGPF  425 (427)
T ss_pred             CccCceECCCCCEEEEEEecCCCEEEEEE----ECC-CCc---eEEeecCCCC----CCCCccCCC
Confidence            457889999999888777554 3333322    221 211   3445455444    788889874

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.49  E-value=5.7e-13  Score=141.55  Aligned_cols=190  Identities=13%  Similarity=0.195  Sum_probs=136.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec-----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI-----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      -+..|-.-|.|.+.|.......+.+..     ...|+|+.|-|.++..++++-.+|.++++|.....             
T Consensus       187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------------  253 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------------  253 (636)
T ss_pred             ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------------
Confidence            455666777788887655222211211     57899999999987788888899999999852110             


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV  543 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~  543 (707)
                                                   ...-.+-...+++..|+....-+         ..+.... ... ...+.|.
T Consensus       254 -----------------------------~~t~p~~~~~k~~~~f~i~t~ks---------k~~rNPv-~~w~~~~g~in  294 (636)
T KOG2394|consen  254 -----------------------------GATAPSYQALKDGDQFAILTSKS---------KKTRNPV-ARWHIGEGSIN  294 (636)
T ss_pred             -----------------------------cCCCCcccccCCCCeeEEeeeec---------cccCCcc-ceeEecccccc
Confidence                                         00001111234555554433211         0000111 223 3456889


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235          544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                      ..+|+|||++|++.+ ||.+||||..+++++..++.--+...|++|||||++|++|+.|-.|.||.+... +.+..-++|
T Consensus       295 ~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGH  373 (636)
T KOG2394|consen  295 EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGH  373 (636)
T ss_pred             ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEecccc
Confidence            999999999999988 999999999999887777666677999999999999999999999999999876 788888999


Q ss_pred             CCCEEEEEEc
Q 005235          623 PKDITNVAFH  632 (707)
Q Consensus       623 ~~~I~~vafs  632 (707)
                      ..+|..|+|.
T Consensus       374 kSWVs~VaFD  383 (636)
T KOG2394|consen  374 KSWVSVVAFD  383 (636)
T ss_pred             ccceeeEeec
Confidence            9999999998

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.49  E-value=8.7e-13  Score=141.91  Aligned_cols=204  Identities=19%  Similarity=0.251  Sum_probs=158.5

Q ss_pred             eEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceee-----eee-ccCCCeEEEEEeCCCC-EEEEEeC
Q 005235          488 GIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHR-----IPF-KLHGLPVSSVFHPTRS-IFFVSTK  559 (707)
Q Consensus       488 ~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-----~~~-~~~~~V~~v~fspd~~-~l~v~sd  559 (707)
                      ..+.+|...|+.+.|+| ...+||+++.|.   .|+||.+.++..+.     ..+ ...-.|.++.|||... +|+++..
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~---~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~  149 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDE---PVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH  149 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCC---eeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence            45778999999999999 455789999988   99999999766542     223 3445788999999765 4555568


Q ss_pred             CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC-EEEEEEcCCCCEE
Q 005235          560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD-ITNVAFHRSYPLF  638 (707)
Q Consensus       560 g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~-I~~vafspdg~ll  638 (707)
                      |+++|||+.+++.+..+.+|..-|.++.|+.||.+|++.+.|+.|+|||.+....++++..+|.+. =..|.|.-+-..|
T Consensus       150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl  229 (1012)
T KOG1445|consen  150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL  229 (1012)
T ss_pred             ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence            999999999999999999999999999999999999999999999999999988999999999753 2346776554455


Q ss_pred             EEEeCC----CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEE
Q 005235          639 ASCSDD----CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA-DSVIRLY  705 (707)
Q Consensus       639 aSgs~D----g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~-Dg~IrlW  705 (707)
                      ++.+-+    ..|++||.+.++        .|+.++.-....   ||.---|.||..+|+-+|. +.+|..+
T Consensus       230 isTGF~~~R~reV~~~Dtr~f~--------~p~~tleld~st---GvLiPl~DpDt~llfLaGKG~~~l~~l  290 (1012)
T KOG1445|consen  230 ISTGFTTKRIREVRAYDTRKFG--------APVHTLELDSST---GVLIPLYDPDTRLLFLAGKGTNKLFML  290 (1012)
T ss_pred             hhcccchhhheeeeeeeccccC--------CcceeEEeeccc---ceEeeeecCCCceEEEecCCcceEEEE
Confidence            555433    479999776554        245555544432   5888889999998877763 4444443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.49  E-value=3.4e-11  Score=121.28  Aligned_cols=172  Identities=16%  Similarity=0.180  Sum_probs=126.8

Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCC
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRS  552 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~  552 (707)
                      .+.+||-............++|.+|.+.++  .++++-.    +.|.||.....-.+...+   .....+.+++-+.+..
T Consensus        76 kviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl~----~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~  149 (346)
T KOG2111|consen   76 KVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVLE----NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS  149 (346)
T ss_pred             eEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEec----CeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence            455555333333345567889999999754  5666654    289999998543332555   2122344444333444


Q ss_pred             EEEEEe--CCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCc-EEEEECCCCCcceEEeecC--CCC
Q 005235          553 IFFVST--KKNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVGSREGK-LCWFDMDLSSKPYRVLKCH--PKD  625 (707)
Q Consensus       553 ~l~v~s--dg~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~-I~vwDl~~~~~~~~~l~~h--~~~  625 (707)
                      +|+.-+  -|.|+|-|+...+.  ...+.+|...|.|++++-+|..||++|..|+ |+|||..++ .+++.++..  ...
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d~A~  228 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-TLLQELRRGVDRAD  228 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-cEeeeeecCCchhe
Confidence            555544  49999999987654  4678899999999999999999999999998 699999988 667777633  357


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235          626 ITNVAFHRSYPLFASCSDDCTAYVFHGMV  654 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~  654 (707)
                      |.+++|||+..+||++|+-|+|+||.+..
T Consensus       229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            99999999999999999999999997764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.48  E-value=2.5e-13  Score=150.27  Aligned_cols=261  Identities=13%  Similarity=0.155  Sum_probs=194.5

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCccc-e
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLD-G  488 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~-~  488 (707)
                      -.+|.|+.|...| .++++++.|..|+||...++..  .+.+|...+...+.+     +++++.|..|++|.+..+.. .
T Consensus       190 ~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvs  268 (1113)
T KOG0644|consen  190 RNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVS  268 (1113)
T ss_pred             hhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHH
Confidence            5789999999999 6899999999999999888754  567788888887776     78899999999999987655 4


Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235          489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIR  563 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~  563 (707)
                      ++.+|++.|++++|+|-.    +.+.||   ++++||.+-....  ..++  .....+.++.|-.++..+++++ ++.-+
T Consensus       269 vLrghtgavtaiafsP~~----sss~dg---t~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~  341 (1113)
T KOG0644|consen  269 VLRGHTGAVTAIAFSPRA----SSSDDG---TCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR  341 (1113)
T ss_pred             HHhccccceeeeccCccc----cCCCCC---ceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence            588999999999999965    667777   9999998721111  0233  3456677888888888888888 78888


Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEE-EEE
Q 005235          564 VYDLLKQRLIKKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLF-ASC  641 (707)
Q Consensus       564 iwDl~~~~~~~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ll-aSg  641 (707)
                      .|.+....      .+...+.-+.++.+ ..+.+++-.+-.+++|++.++ ...+.+.+|...+..+.+||-.+.+ .++
T Consensus       342 n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  342 NHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             cchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCCCcHhhhhc
Confidence            77654211      11111111111111 245666777888999999988 7788899999999999999987754 589


Q ss_pred             eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      +.||.+.|||      +..+..+  -.-+.+|..     +.+..||++|..++....-|.+.|.
T Consensus       415 g~dgst~iwd------i~eg~pi--k~y~~gh~k-----l~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  415 GYDGSTIIWD------IWEGIPI--KHYFIGHGK-----LVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             cCCCceEeee------cccCCcc--eeeecccce-----eeccccCCCCceEecCCCCCceEEe
Confidence            9999999995      4444322  122355654     8889999999988877777777765

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=4.7e-12  Score=143.49  Aligned_cols=244  Identities=15%  Similarity=0.194  Sum_probs=164.6

Q ss_pred             cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235          419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS  498 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~  498 (707)
                      +...+.|+|=.. .++++.....|+|||.+.+...-..++                               -......|+
T Consensus      1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n-------------------------------~~~~~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN-------------------------------GAFPDTRVS 1113 (1387)
T ss_pred             CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC-------------------------------CCCCCCccc
Confidence            455677777763 455555567888888766532110000                               002245677


Q ss_pred             EEEEcC--CCCEEEEEeCCCCccEEEEEECCCCc-----eeeeee--------ccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235          499 SVEWHR--RGDYLSTVMPAGESRAIFMHQLSKKL-----SHRIPF--------KLHGLPVSSVFHPTRSIFFVST-KKNI  562 (707)
Q Consensus       499 ~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~~-----~~~~~~--------~~~~~V~~v~fspd~~~l~v~s-dg~I  562 (707)
                      .+.+-.  +...+++++.||   .|+||+--...     .. ..+        ...+.-.-+.|.....+|++++ -+.|
T Consensus      1114 ~l~liNe~D~aLlLtas~dG---vIRIwk~y~~~~~~~eLV-Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDG---VIRIWKDYADKWKKPELV-TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             eeeeecccchhheeeeccCc---eEEEecccccccCCceeE-EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            777754  445788999988   99999743221     11 111        1112223456766666677666 5899


Q ss_pred             EEEECCCCeEEEEEeCCC-CCeEEEEEc-CCCCEEEEEECCCcEEEEECCCCC--cceEEeecCCCC--EEEEEEcCCCC
Q 005235          563 RVYDLLKQRLIKKLETGL-KEVSSIAIH-PAGDNLIVGSREGKLCWFDMDLSS--KPYRVLKCHPKD--ITNVAFHRSYP  636 (707)
Q Consensus       563 ~iwDl~~~~~~~~l~~~~-~~I~sl~~s-pdg~~L~sGs~Dg~I~vwDl~~~~--~~~~~l~~h~~~--I~~vafspdg~  636 (707)
                      ||||+.+..++..+.... ..|+++.-+ +.|+.|++|..||.|++||.+...  .++...+.|+..  |..+.+.+.|-
T Consensus      1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred             EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence            999999888777766443 346776543 347999999999999999998754  367888899887  99999999776


Q ss_pred             -EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          637 -LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       637 -llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                       -|++||.||.|++||++.      ......+ .+..|... +..++++..|++.+.||||++ +.|+||++
T Consensus      1270 ~elvSgs~~G~I~~~DlR~------~~~e~~~-~iv~~~~y-Gs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRM------SSKETFL-TIVAHWEY-GSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred             cceeeeccCCeEEEEeccc------Ccccccc-eeeecccc-CccceeeeeccCCCeeeecCc-ceEEEEec
Confidence             499999999999996653      2211112 22333211 112899999999999999999 99999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=8.3e-12  Score=121.12  Aligned_cols=237  Identities=15%  Similarity=0.145  Sum_probs=163.2

Q ss_pred             cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccce-EEeccCCCe
Q 005235          419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG-IRLRHFKMV  497 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V  497 (707)
                      .|.+-+|+|.+ ..++++...|+|.++.+.......                +...         ++... ...+|.++|
T Consensus        12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~s----------------a~~~---------gk~~iv~eqahdgpi   65 (325)
T KOG0649|consen   12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGS----------------AEPP---------GKLKIVPEQAHDGPI   65 (325)
T ss_pred             HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccc----------------cCCC---------CCcceeeccccCCCe
Confidence            45667899998 478888899999999876532110                0011         11111 246899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee-------e--eee----ccCCCeEEEEEeCCCC-EEEEEeCCeEE
Q 005235          498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH-------R--IPF----KLHGLPVSSVFHPTRS-IFFVSTKKNIR  563 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~-------~--~~~----~~~~~V~~v~fspd~~-~l~v~sdg~I~  563 (707)
                      ..++|+  ..+|++++. |   .|+-|..+.....       .  .+.    -.-..|+++...|... .|++|+|+.++
T Consensus        66 y~~~f~--d~~Lls~gd-G---~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y  139 (325)
T KOG0649|consen   66 YYLAFH--DDFLLSGGD-G---LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIY  139 (325)
T ss_pred             eeeeee--hhheeeccC-c---eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEE
Confidence            999998  456666664 6   8998887543220       0  112    1123688899998654 45555699999


Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec---------C-CCCEEEEEEcC
Q 005235          564 VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC---------H-PKDITNVAFHR  633 (707)
Q Consensus       564 iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~---------h-~~~I~~vafsp  633 (707)
                      .||+.+|+..+.+.+|...|.+++--.....+++|+.||++++||++++ +.++++..         | ...|-+++-+ 
T Consensus       140 ~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~~-  217 (325)
T KOG0649|consen  140 QVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAVN-  217 (325)
T ss_pred             EEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEecc-
Confidence            9999999999999999999999998666678999999999999999987 66665542         2 2346666654 


Q ss_pred             CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       634 dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                       ..+|++|+ .-.+.+||++..      .. .++..+.+|       |..+.|..  ..++++|..+.|.-|.+
T Consensus       218 -edWlvCGg-Gp~lslwhLrss------e~-t~vfpipa~-------v~~v~F~~--d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  218 -EDWLVCGG-GPKLSLWHLRSS------ES-TCVFPIPAR-------VHLVDFVD--DCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             -CceEEecC-CCceeEEeccCC------Cc-eEEEecccc-------eeEeeeec--ceEEEeccccceeeeee
Confidence             45676554 557999976522      11 234455565       77888854  46777877767776653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=3.6e-12  Score=131.31  Aligned_cols=235  Identities=16%  Similarity=0.111  Sum_probs=165.6

Q ss_pred             CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhc--------ccccceeeeccc---ccccCCCCcEEEEecCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQ--------RRVKDLLHVETP---TAPDDNMASIVSWLQHD  484 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~--------~~~~~v~~~~~~---~~~~~~d~~i~iW~~~~  484 (707)
                      ...|.+++|.-+++..++.+. .+..+..+.+........        .....+......   +.++..+|.+.+|....
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~  134 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKS  134 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEeccC
Confidence            456777777777766666665 555565555444322111        111111111111   56667788888888763


Q ss_pred             ccc----eEEeccCCCeEEEEEcCCCCEEEE-EeCCCCccEEEEEECCCCceeeeee----------ccCCCeEEEEEeC
Q 005235          485 KLD----GIRLRHFKMVSSVEWHRRGDYLST-VMPAGESRAIFMHQLSKKLSHRIPF----------KLHGLPVSSVFHP  549 (707)
Q Consensus       485 ~~~----~~~~~h~~~V~~v~~sp~g~~lat-~s~dg~~~~V~Iwdl~~~~~~~~~~----------~~~~~V~~v~fsp  549 (707)
                      +..    .........+..|.-++...+|++ |+... ...+.|||+...... ..-          ...-.++++.|-+
T Consensus       135 ~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~-~n~lkiwdle~~~qi-w~aKNvpnD~L~LrVPvW~tdi~Fl~  212 (412)
T KOG3881|consen  135 GDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKEN-INELKIWDLEQSKQI-WSAKNVPNDRLGLRVPVWITDIRFLE  212 (412)
T ss_pred             CccccccceeeecCCceeeeccCCCCCceEecCchhc-ccceeeeecccceee-eeccCCCCccccceeeeeeccceecC
Confidence            321    112233356666777776665554 66552 348999999887332 111          1123577889988


Q ss_pred             C--CCEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235          550 T--RSIFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       550 d--~~~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      .  ...|++++ -++||+||.+.| +++.++.....+|+++...|+|++|++|..-|.+..||++.+..+...+.+..+.
T Consensus       213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs  292 (412)
T KOG3881|consen  213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS  292 (412)
T ss_pred             CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCC
Confidence            7  77888888 699999999986 6888888888899999999999999999999999999999874444458889999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          626 ITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      |+++..||.++++|+||-|..|||+|+.
T Consensus       293 irsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  293 IRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             cceEEEcCCCceEEeeccceeEEEeecc
Confidence            9999999999999999999999999543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.45  E-value=9.8e-14  Score=145.07  Aligned_cols=192  Identities=17%  Similarity=0.177  Sum_probs=169.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEE
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKK  575 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~  575 (707)
                      ....+.++.+|.+|+.++..|   .|..+|+.+.... ..+.....|..+.|-.+..+|+++....++|||- .|..+..
T Consensus       131 GPY~~~ytrnGrhlllgGrKG---HlAa~Dw~t~~L~-~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHC  205 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKG---HLAAFDWVTKKLH-FEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHC  205 (545)
T ss_pred             CCeeeeecCCccEEEecCCcc---ceeeeecccceee-eeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEee
Confidence            457789999999999999988   9999999999887 7777788899999999999999999999999995 4767777


Q ss_pred             EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q 005235          576 LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVY  655 (707)
Q Consensus       576 l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~  655 (707)
                      +..+ ..|..+.|-|---+|++++..|.+..-|+.++ +.+..+....+.+..++-+|-.-.+-+|...|+|.+|.-   
T Consensus       206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP---  280 (545)
T KOG1272|consen  206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP---  280 (545)
T ss_pred             hhhc-CchhhhcccchhheeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC---
Confidence            7766 67899999999889999999999999999988 778888888899999999999999999999999999942   


Q ss_pred             cCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          656 SDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       656 ~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                         ...   .|+..+-.|.+.    |.++++.++|.+++|+|.|..|+||||
T Consensus       281 ---~sk---ePLvKiLcH~g~----V~siAv~~~G~YMaTtG~Dr~~kIWDl  322 (545)
T KOG1272|consen  281 ---NSK---EPLVKILCHRGP----VSSIAVDRGGRYMATTGLDRKVKIWDL  322 (545)
T ss_pred             ---CCc---chHHHHHhcCCC----cceEEECCCCcEEeecccccceeEeee
Confidence               211   245566778887    999999999999999999999999996

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=7.8e-12  Score=133.90  Aligned_cols=266  Identities=14%  Similarity=0.162  Sum_probs=176.0

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccc------eeeeccc-ccccCCCCcEEEEecCCccceE
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKD------LLHVETP-TAPDDNMASIVSWLQHDKLDGI  489 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~------v~~~~~~-~~~~~~d~~i~iW~~~~~~~~~  489 (707)
                      ...-+.|..+|||+..++++..--.|++||+..-......|.+.      +++-.++ .+.-.+|..|.+....+.....
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~  130 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRT  130 (703)
T ss_pred             ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeee
Confidence            66778999999996434444466799999988765444333221      1111111 1122223333332221111111


Q ss_pred             EeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE
Q 005235          490 RLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYD  566 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD  566 (707)
                        .-...-..++++. ..+.++.|+. .   .|+-++|..++.. .+| ...+.++++..++-..+|++|+ +|.|-.||
T Consensus       131 --RIP~~GRDm~y~~~scDly~~gsg-~---evYRlNLEqGrfL-~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD  203 (703)
T KOG2321|consen  131 --RIPKFGRDMKYHKPSCDLYLVGSG-S---EVYRLNLEQGRFL-NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD  203 (703)
T ss_pred             --ecCcCCccccccCCCccEEEeecC-c---ceEEEEccccccc-cccccccccceeeeecCccceEEecccCceEEEec
Confidence              1122234566654 3344444442 2   7888999999988 999 5568999999999999999999 89999999


Q ss_pred             CCCCeEEEEEeCCC-----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-ecCCCCEEEEEEcCC
Q 005235          567 LLKQRLIKKLETGL-----------KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-KCHPKDITNVAFHRS  634 (707)
Q Consensus       567 l~~~~~~~~l~~~~-----------~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~~I~~vafspd  634 (707)
                      .++...+.++....           ..|+++.|+.+|-.+++|+.+|.|.|||+++. +|+..- .+..-+|..+.|.+.
T Consensus       204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC-CceeecccCCccceeeeccccc
Confidence            99877666665322           23999999999999999999999999999987 555322 233468999999876


Q ss_pred             --CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          635 --YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       635 --g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                        .+.++|+ +...++|||-      .++..   ...+..-.     .++++++-|++-.+++|-.++.+..|
T Consensus       283 ~~q~~v~S~-Dk~~~kiWd~------~~Gk~---~asiEpt~-----~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  283 DQQNKVVSM-DKRILKIWDE------CTGKP---MASIEPTS-----DLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             CCCceEEec-chHHhhhccc------ccCCc---eeeccccC-----CcCceeeecCCceEEEecCCCcceeE
Confidence              3455554 4568999953      33332   33333222     28999999999999999888766543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.5e-12  Score=138.32  Aligned_cols=214  Identities=17%  Similarity=0.203  Sum_probs=153.4

Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCC--CCEEEEEe-CCeEE
Q 005235          489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPT--RSIFFVST-KKNIR  563 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd--~~~l~v~s-dg~I~  563 (707)
                      .+.+|.+-|.|+.|+.+|.+|++|+.|-   .+.|||....+.. ..+  +|.+.|.++.|-|.  ..++++|. |..|+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~---r~ivWd~~~~Kll-hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDT---RLIVWDPFEYKLL-HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcc---eEEeecchhccee-eeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            4779999999999999999999999988   9999999877776 666  99999999999984  45566665 99999


Q ss_pred             EEECCC----------CeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEeecC---------C
Q 005235          564 VYDLLK----------QRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCH---------P  623 (707)
Q Consensus       564 iwDl~~----------~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h---------~  623 (707)
                      +||+..          ......+..|...|..|+..|++ ..+.+++.||+|+-+|++....+-.....|         -
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999984          23445566788889999999999 788999999999999998643222211111         1


Q ss_pred             CCEEEEEEcCCCC-EEEEEeCCCcEEEEecc-cccCCCCC----Ccc----cceEEe-eCCCC-C------CCCCeeEEE
Q 005235          624 KDITNVAFHRSYP-LFASCSDDCTAYVFHGM-VYSDLNQN----PLI----VPLEIL-RGHTS-S------NGRGVMDCK  685 (707)
Q Consensus       624 ~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~-~~~Dl~~~----~~~----~pl~~l-~gh~~-~------~~~gV~~l~  685 (707)
                      -...++..+|..+ +||.|+.|-..++||.+ +...+...    +..    .++.-+ .+|.. .      .-.+++-++
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            2467899999766 89999999999999832 21111111    110    012222 23331 0      012267789


Q ss_pred             EcCCCCEE-EEEeCCCcEEEEeC
Q 005235          686 FHPRQPWL-FTAGADSVIRLYCH  707 (707)
Q Consensus       686 fspdg~~L-~s~g~Dg~IrlWdl  707 (707)
                      |+|+|.-| ++-|. -.|.++++
T Consensus       281 fnpNGtElLvs~~g-EhVYlfdv  302 (758)
T KOG1310|consen  281 FNPNGTELLVSWGG-EHVYLFDV  302 (758)
T ss_pred             ECCCCcEEEEeeCC-eEEEEEee
Confidence            99999755 55444 46888774

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=2.9e-12  Score=131.12  Aligned_cols=248  Identities=17%  Similarity=0.126  Sum_probs=173.3

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceE-EeccCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGI-RLRHFK  495 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~-~~~h~~  495 (707)
                      .++|++|.|+.++ ..|++++.|..+++|++.....   ...                         .+..++ -..|.+
T Consensus        56 ~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~---~k~-------------------------~KPI~~~~~~H~S  106 (609)
T KOG4227|consen   56 TGCINALQFSHND-RFLASGGDDMHGRVWNVDELMV---RKT-------------------------PKPIGVMEHPHRS  106 (609)
T ss_pred             ccccceeeeccCC-eEEeecCCcceeeeechHHHHh---hcC-------------------------CCCceeccCcccc
Confidence            7899999999998 4677777888999999753210   000                         011112 235678


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeecc---CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKL---HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR  571 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~---~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~  571 (707)
                      .|.|++|......+.+|..++   +|..+|+.+.+.. ..+.+   .+.|..+..||..+.|++.+ ++.|.+||.+...
T Consensus       107 NIF~L~F~~~N~~~~SG~~~~---~VI~HDiEt~qsi-~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  107 NIFSLEFDLENRFLYSGERWG---TVIKHDIETKQSI-YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             ceEEEEEccCCeeEecCCCcc---eeEeeecccceee-eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            999999999989999999988   9999999999887 77743   46999999999988898888 8999999998643


Q ss_pred             -EEE--EEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEeecC------CCCEEEEEEcCCCCEEEEE
Q 005235          572 -LIK--KLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCH------PKDITNVAFHRSYPLFASC  641 (707)
Q Consensus       572 -~~~--~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h------~~~I~~vafspdg~llaSg  641 (707)
                       ...  .+........++.|+|-. .+|++.+..+-+-+||.+....++....+.      ...-.++.|+|.|+.|.+-
T Consensus       183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence             221  122233557888999976 577888888999999998765544322211      1223578999999988776


Q ss_pred             eCCCcEEEEecccccCCCCCCcccceEEeeCCCC---CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS---SNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~---~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      -.-..-.+|      |+....+.  +..+. |..   .+...+.+++|-.+-. ++||+.+-.|.+|.|
T Consensus       263 RR~~~P~~~------D~~S~R~~--V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl  321 (609)
T KOG4227|consen  263 RRGKCPLYF------DFISQRCF--VLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKL  321 (609)
T ss_pred             hccCCCEEe------eeecccce--eEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEec
Confidence            544444455      33333321  21111 111   1223477888876644 999999999999975

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.5e-11  Score=125.44  Aligned_cols=241  Identities=14%  Similarity=0.142  Sum_probs=155.9

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      +..+..++|++.- ..+++++.|..|++|+-......                                  .........
T Consensus        98 ~~dlr~~aWhqH~-~~fava~nddvVriy~ksst~pt----------------------------------~Lks~sQrn  142 (445)
T KOG2139|consen   98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSSTCPT----------------------------------KLKSVSQRN  142 (445)
T ss_pred             hcceeeEeechhh-hhhhhhccCcEEEEeccCCCCCc----------------------------------eecchhhcc
Confidence            4567889999965 35777788889998885432110                                  011233567


Q ss_pred             eEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceee-----------eee--ccCCCeEEEEEeCCCCEEEEEe--CC
Q 005235          497 VSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHR-----------IPF--KLHGLPVSSVFHPTRSIFFVST--KK  560 (707)
Q Consensus       497 V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~-----------~~~--~~~~~V~~v~fspd~~~l~v~s--dg  560 (707)
                      |+|++|-|.+ ..|+.++..    .|.||..+......           ..+  ..+..|++++|.+||..+++++  +.
T Consensus       143 vtclawRPlsaselavgCr~----gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  143 VTCLAWRPLSASELAVGCRA----GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             eeEEEeccCCcceeeeeecc----eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence            9999999954 577777764    59999875422110           122  3346899999999999999998  79


Q ss_pred             eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCE-EE
Q 005235          561 NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPL-FA  639 (707)
Q Consensus       561 ~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~l-la  639 (707)
                      .|.|||..++..+.-..-+.+.++-+.|||||++|++++-|+..++|.....-...+ .....+.|...+|+|+|.. |+
T Consensus       219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf  297 (445)
T KOG2139|consen  219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLF  297 (445)
T ss_pred             eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEE
Confidence            999999999866544434456789999999999999999999999996543212122 2223458999999999984 44


Q ss_pred             EEeCCCcEEEEecccccCCCC----CCcccceEEe------eCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          640 SCSDDCTAYVFHGMVYSDLNQ----NPLIVPLEIL------RGHTSSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       640 Sgs~Dg~I~Vwd~~~~~Dl~~----~~~~~pl~~l------~gh~~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                      +++..-.|+-.+...-.....    .....++..|      .+..- -+.++.+++|.|.|.+||+.-.
T Consensus       298 ~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l-~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  298 ACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL-CCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             EEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccc-ccCccceeeECCCCCEEEEEEc
Confidence            554443333222211000000    0011111111      12110 1334899999999999987643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.43  E-value=9.9e-11  Score=127.22  Aligned_cols=278  Identities=14%  Similarity=0.146  Sum_probs=170.3

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhccccccee
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      |+.++.++|.++.||.|.++|+.+++.+.++.......++++|+||. .+++++ ..+.+.++|..+.+..-        
T Consensus        44 ~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~-~~~v~n~~~~~v~v~D~~tle~v~--------  114 (369)
T PF02239_consen   44 FSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGK-YVYVANYEPGTVSVIDAETLEPVK--------  114 (369)
T ss_dssp             -TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTT-EEEEEEEETTEEEEEETTT--EEE--------
T ss_pred             ecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCC-EEEEEecCCCceeEecccccccee--------
Confidence            44555688989999999999999999999999988899999999994 455444 68899999987653310        


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL  541 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~  541 (707)
                                      .-....  . ........+..|..++....++..-.+.  +.|.+-|..........+ .....
T Consensus       115 ----------------~I~~~~--~-~~~~~~~Rv~aIv~s~~~~~fVv~lkd~--~~I~vVdy~d~~~~~~~~i~~g~~  173 (369)
T PF02239_consen  115 ----------------TIPTGG--M-PVDGPESRVAAIVASPGRPEFVVNLKDT--GEIWVVDYSDPKNLKVTTIKVGRF  173 (369)
T ss_dssp             ----------------EEE--E--E--TTTS---EEEEEE-SSSSEEEEEETTT--TEEEEEETTTSSCEEEEEEE--TT
T ss_pred             ----------------eccccc--c-cccccCCCceeEEecCCCCEEEEEEccC--CeEEEEEeccccccceeeeccccc
Confidence                            000000  0 0001345678888888888676665543  388888877654432333 66677


Q ss_pred             eEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC----CCeEEEEEcCCC----------CEEEEEECCCcEE
Q 005235          542 PVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGL----KEVSSIAIHPAG----------DNLIVGSREGKLC  605 (707)
Q Consensus       542 V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~----~~I~sl~~spdg----------~~L~sGs~Dg~I~  605 (707)
                      .....|+|++++++++.  .+.|-++|+.+++.+..+..+.    ..+..+ .||..          ...++.-....+.
T Consensus       174 ~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~  252 (369)
T PF02239_consen  174 PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVS  252 (369)
T ss_dssp             EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT
T ss_pred             ccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccc
Confidence            88999999999998876  6899999999998887765432    223332 23432          2222222234566


Q ss_pred             EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE----eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCe
Q 005235          606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC----SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGV  681 (707)
Q Consensus       606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg----s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV  681 (707)
                      +||.... +.++++.....+ ..+..||+++++...    ...++|.|+|..      +...   +..+.....   .++
T Consensus       253 v~d~~~w-kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~------tl~~---~~~i~~~~~---~~~  318 (369)
T PF02239_consen  253 VHDDYAW-KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK------TLKV---VKTITPGPG---KRV  318 (369)
T ss_dssp             -STTTBT-SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC------GTEE---EE-HHHHHT-----E
T ss_pred             cchhhcC-eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc------Ccce---eEEEeccCC---CcE
Confidence            7888776 778888877777 778889999999887    455899999654      2222   344432211   128


Q ss_pred             eEEEEcCCCCEEEEE--eCCCcEEEEe
Q 005235          682 MDCKFHPRQPWLFTA--GADSVIRLYC  706 (707)
Q Consensus       682 ~~l~fspdg~~L~s~--g~Dg~IrlWd  706 (707)
                      ..+.|+++|+.+..+  ..++.|.+||
T Consensus       319 ~h~ef~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  319 VHMEFNPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             EEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred             eccEECCCCCEEEEEEecCCCEEEEEE
Confidence            999999999966433  3344799987

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.42  E-value=1.8e-09  Score=117.03  Aligned_cols=275  Identities=15%  Similarity=0.193  Sum_probs=174.7

Q ss_pred             EEEEeCC----CcEEEEeC--CCCeEE--EEEecCCcEEEEEEccCCCccEEEEEeC----CeEEEEECCCCCchhcccc
Q 005235          391 EYKGSTD----GTVRIWEV--ESGRCL--RVLEIGEAIQYVAWNPLPELPVLAVSVG----QDVLILNTGLGNEEEQRRV  458 (707)
Q Consensus       391 l~sgs~D----gtVrIWd~--~tg~~l--~~l~~~~~V~~v~~spdg~~~lla~s~d----~~V~lwd~~~~~~~~~~~~  458 (707)
                      +|.|+..    +.|.+|++  .+|+..  ..+........|+++|++. .|+++...    +.|..|.+....       
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~-------   73 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDT-------   73 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTT-------
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCc-------
Confidence            5666666    68999888  566543  3333477788899999994 66676653    466666543320       


Q ss_pred             cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee---
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP---  535 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~---  535 (707)
                                      +.+..-       ............+++++++++|+++...+  +.|.++++.........   
T Consensus        74 ----------------g~L~~~-------~~~~~~g~~p~~i~~~~~g~~l~vany~~--g~v~v~~l~~~g~l~~~~~~  128 (345)
T PF10282_consen   74 ----------------GTLTLL-------NSVPSGGSSPCHIAVDPDGRFLYVANYGG--GSVSVFPLDDDGSLGEVVQT  128 (345)
T ss_dssp             ----------------TEEEEE-------EEEEESSSCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTSEEEEEEEE
T ss_pred             ----------------ceeEEe-------eeeccCCCCcEEEEEecCCCEEEEEEccC--CeEEEEEccCCcccceeeee
Confidence                            111111       11222455667899999999999988643  49999999874322121   


Q ss_pred             ec-----------cCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe--EE--EEEe-CCCCCeEEEEEcCCCCEEEE
Q 005235          536 FK-----------LHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR--LI--KKLE-TGLKEVSSIAIHPAGDNLIV  597 (707)
Q Consensus       536 ~~-----------~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~--~~--~~l~-~~~~~I~sl~~spdg~~L~s  597 (707)
                      +.           ....+.++.|+|++++++++.  ...|++|++....  +.  ..+. ........++|+|+|+++.+
T Consensus       129 ~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv  208 (345)
T PF10282_consen  129 VRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYV  208 (345)
T ss_dssp             EESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEE
T ss_pred             cccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEE
Confidence            11           235678999999999999987  5789999997654  32  2232 23355789999999998866


Q ss_pred             EE-CCCcEEEEECCCCCc---ceEEeecC------CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccc
Q 005235          598 GS-REGKLCWFDMDLSSK---PYRVLKCH------PKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVP  666 (707)
Q Consensus       598 Gs-~Dg~I~vwDl~~~~~---~~~~l~~h------~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~p  666 (707)
                      .. .++.|.+|++.....   .+..+...      ......++++|+|++|+++. ..++|.+|++.    ..++ .+..
T Consensus       209 ~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d----~~~g-~l~~  283 (345)
T PF10282_consen  209 VNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD----PATG-TLTL  283 (345)
T ss_dssp             EETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC----TTTT-TEEE
T ss_pred             ecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe----cCCC-ceEE
Confidence            54 567899999983221   12222211      12578999999999766554 67789999652    1122 2233


Q ss_pred             eEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235          667 LEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       667 l~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl  707 (707)
                      +..+......    -.+++++|+|++|++++ .++.|.+|++
T Consensus       284 ~~~~~~~G~~----Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  284 VQTVPTGGKF----PRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEEEEESSSS----EEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEeCCCCC----ccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            4444433332    79999999999998877 5678888863

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.42  E-value=1.1e-11  Score=122.57  Aligned_cols=149  Identities=19%  Similarity=0.273  Sum_probs=109.0

Q ss_pred             EEEEEcCCCCEEEEEeC---CC----CccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe---CCeEEEE
Q 005235          498 SSVEWHRRGDYLSTVMP---AG----ESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST---KKNIRVY  565 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~---dg----~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s---dg~I~iw  565 (707)
                      ..+.|+++|++|++-..   |.    .-+...||.++........+  ...++|.+++|+|++..|++..   ++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999998876554   11    11245555553332221233  5567899999999999887653   5799999


Q ss_pred             ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235          566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs  642 (707)
                      |++ ++.+..+.  ...++.|.|+|+|++|++|+.+   |.|.+||++.. +.+..+.  ...++.++|+|+|++|++++
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~--~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE--HSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeeccc--cCcEEEEEEcCCCCEEEEEE
Confidence            996 66666664  4578899999999999998754   66999999865 5555554  34578999999999999887


Q ss_pred             C------CCcEEEEec
Q 005235          643 D------DCTAYVFHG  652 (707)
Q Consensus       643 ~------Dg~I~Vwd~  652 (707)
                      .      |..++||+.
T Consensus       163 t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  163 TSPRLRVDNGFKIWSF  178 (194)
T ss_pred             eccceeccccEEEEEe
Confidence            4      778899964

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.41  E-value=1.4e-11  Score=124.08  Aligned_cols=270  Identities=16%  Similarity=0.167  Sum_probs=177.2

Q ss_pred             cccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEE-EeCCeEEEEECCCCCchhcccccc
Q 005235          382 KPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAV-SVGQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       382 ~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~-s~d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      -.|+.+++++++.+.- .+.|-|..|-+.++.+..-+.|..+.|..+.. .++++ ..++.|.+|++...+         
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~-~ilC~~yk~~~vqvwsl~Qpe---------   82 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSC-HILCVAYKDPKVQVWSLVQPE---------   82 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccce-eeeeeeeccceEEEEEeecce---------
Confidence            3478888999998876 67788888777665555567788999999884 44444 467789999865431         


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeeccC
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKLH  539 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~~  539 (707)
                                         |      .+.+......+.+++|||+|+.++..+ -+-   .|.+|.+.+......+ -.+
T Consensus        83 -------------------w------~ckIdeg~agls~~~WSPdgrhiL~tseF~l---riTVWSL~t~~~~~~~-~pK  133 (447)
T KOG4497|consen   83 -------------------W------YCKIDEGQAGLSSISWSPDGRHILLTSEFDL---RITVWSLNTQKGYLLP-HPK  133 (447)
T ss_pred             -------------------e------EEEeccCCCcceeeeECCCcceEeeeeccee---EEEEEEeccceeEEec-ccc
Confidence                               1      112334567889999999997666554 444   8999999988764122 334


Q ss_pred             CCeEEEEEeCCCCEEEEEe--CC--eEEE-----------EECCCC-----------eEE-----------EEEeCCCCC
Q 005235          540 GLPVSSVFHPTRSIFFVST--KK--NIRV-----------YDLLKQ-----------RLI-----------KKLETGLKE  582 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s--dg--~I~i-----------wDl~~~-----------~~~-----------~~l~~~~~~  582 (707)
                      ..+..++|+|+|++.+.++  |.  .+.|           +++.+.           ..+           ..+..+ -.
T Consensus       134 ~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~-lG  212 (447)
T KOG4497|consen  134 TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG-LG  212 (447)
T ss_pred             cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec-cc
Confidence            5568999999999988776  31  1111           122111           111           111111 35


Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEECCCCC-------------------------------------------------
Q 005235          583 VSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-------------------------------------------------  613 (707)
Q Consensus       583 I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-------------------------------------------------  613 (707)
                      +..++|+|.+++|++|++|+.++|.+--+..                                                 
T Consensus       213 ~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s  292 (447)
T KOG4497|consen  213 LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES  292 (447)
T ss_pred             eeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc
Confidence            8889999999999999999988875422100                                                 


Q ss_pred             --------cc--eEEee------cCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235          614 --------KP--YRVLK------CHPKDITNVAFHRSYPLFASCSDD--CTAYVFHGMVYSDLNQNPLIVPLEILRGHTS  675 (707)
Q Consensus       614 --------~~--~~~l~------~h~~~I~~vafspdg~llaSgs~D--g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~  675 (707)
                              .+  +..++      .....+.-++||+|..++|+-.+.  ..+-|||+.      ...+.   ..| -...
T Consensus       293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq------~l~l~---avL-iQk~  362 (447)
T KOG4497|consen  293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ------NLKLH---AVL-IQKH  362 (447)
T ss_pred             hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech------hhhhh---hhh-hhcc
Confidence                    00  00111      011235678999999999987654  578999543      22221   111 1122


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       676 ~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      +    |....|+|..+.|+.+.....+.+|.
T Consensus       363 p----iraf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  363 P----IRAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             c----eeEEEeCCCCceEEEEcCCceEEEEc
Confidence            2    99999999999999888778888885

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.39  E-value=6.8e-11  Score=131.34  Aligned_cols=205  Identities=18%  Similarity=0.168  Sum_probs=142.7

Q ss_pred             EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEE
Q 005235          477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFV  556 (707)
Q Consensus       477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v  556 (707)
                      +.+++..+.....+..+...+.+.+|+|+|++|+.++..+....|.+|++.++... ......+.+.+++|+|+++.|+.
T Consensus       172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~  250 (417)
T TIGR02800       172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAV  250 (417)
T ss_pred             EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEE
Confidence            44455444444445566777899999999999999886654568999999887654 22255566778999999998776


Q ss_pred             Ee--C--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C--cEEEEECCCCCcceEEeecCCCCEEEE
Q 005235          557 ST--K--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-G--KLCWFDMDLSSKPYRVLKCHPKDITNV  629 (707)
Q Consensus       557 ~s--d--g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g--~I~vwDl~~~~~~~~~l~~h~~~I~~v  629 (707)
                      +.  +  ..|++||+.++... .+..+.....+.+|+|+|+.|+..+.. +  .|+++|+..+ . ...+..+...+..+
T Consensus       251 ~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~-~-~~~l~~~~~~~~~~  327 (417)
T TIGR02800       251 SLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG-E-VRRLTFRGGYNASP  327 (417)
T ss_pred             EECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC-C-EEEeecCCCCccCe
Confidence            43  3  46999999877543 444444455678999999998877653 3  5778887754 2 44555566677889


Q ss_pred             EEcCCCCEEEEEeCCC---cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          630 AFHRSYPLFASCSDDC---TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       630 afspdg~llaSgs~Dg---~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                      +|+|+|.+|+.++.++   .|.+|+.      .+..    ...+.... .    .....|+|++.+|+.++.++
T Consensus       328 ~~spdg~~i~~~~~~~~~~~i~~~d~------~~~~----~~~l~~~~-~----~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       328 SWSPDGDLIAFVHREGGGFNIAVMDL------DGGG----ERVLTDTG-L----DESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEeC------CCCC----eEEccCCC-C----CCCceECCCCCEEEEEEeCC
Confidence            9999999988887765   6777743      3322    23333222 1    45568999999887776654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.39  E-value=1.5e-10  Score=128.70  Aligned_cols=208  Identities=15%  Similarity=0.153  Sum_probs=140.6

Q ss_pred             CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235          397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN  473 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~  473 (707)
                      ...|.++|...+...........+.+.+|+|+|. .++.++..   ..|.+|++.++.                      
T Consensus       169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~----------------------  225 (417)
T TIGR02800       169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQ----------------------  225 (417)
T ss_pred             cceEEEEcCCCCCCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCC----------------------
Confidence            3458888875444433334466799999999994 45554433   367777765442                      


Q ss_pred             CCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCE
Q 005235          474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSI  553 (707)
Q Consensus       474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~  553 (707)
                                   ...+..+.+.+.+++|+|+|+.|+..........|.+|++.++... ....+.+......|+|++..
T Consensus       226 -------------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~  291 (417)
T TIGR02800       226 -------------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKS  291 (417)
T ss_pred             -------------EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCE
Confidence                         1122334556677899999998876544333457999999887653 22244455567899999998


Q ss_pred             EEEEeC----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCCCcceEEeecCCCCE
Q 005235          554 FFVSTK----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG---KLCWFDMDLSSKPYRVLKCHPKDI  626 (707)
Q Consensus       554 l~v~sd----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---~I~vwDl~~~~~~~~~l~~h~~~I  626 (707)
                      |+.+++    ..|.++|+.+++.. .+..+...+..++|+|+|++|+.++.++   .|.+||+.++  ....+... ...
T Consensus       292 l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~--~~~~l~~~-~~~  367 (417)
T TIGR02800       292 IAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG--GERVLTDT-GLD  367 (417)
T ss_pred             EEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC--CeEEccCC-CCC
Confidence            877652    36888898876643 4444556678899999999999988876   7899998764  23334322 234


Q ss_pred             EEEEEcCCCCEEEEEeCCC
Q 005235          627 TNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       627 ~~vafspdg~llaSgs~Dg  645 (707)
                      ...+|+|++..|+.++.++
T Consensus       368 ~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       368 ESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCceECCCCCEEEEEEeCC
Confidence            5678999999887777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=1.5e-11  Score=140.16  Aligned_cols=189  Identities=13%  Similarity=0.103  Sum_probs=148.8

Q ss_pred             EEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCC-----eEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE
Q 005235          500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGL-----PVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI  573 (707)
Q Consensus       500 v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~-----V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~  573 (707)
                      ..+.-....++.++.+.   .+.|||....... ..+.+...     ..-+.++++.-++++|+ -+.|.+|+......-
T Consensus        93 ~~l~~e~k~i~l~~~~n---s~~i~d~~~~~~~-~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p  168 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRN---SLLIRDSKNSSVL-SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP  168 (967)
T ss_pred             cchhhhcceEEEEEcCc---eEEEEecccCcee-hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence            44444566777777666   9999998877654 33322221     22234566666778887 799999998743333


Q ss_pred             EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      ..+.+|.+.|.++.++-+|.++++.|.|.++++|++++...+..+.-+|+..|+.+.|+|.  .++|++.|.+.++|...
T Consensus       169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence            3688999999999999999999999999999999999886555577789999999999998  89999999999999432


Q ss_pred             cccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          654 VYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       654 ~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                            ..    .+..+.+|...   ++..++.+++..+++|++.||.+++|++
T Consensus       247 ------~~----~l~~y~~h~g~---~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  247 ------GT----QLEVYDEHSGK---GIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             ------cc----eehhhhhhhhc---ceeEEEEcCCceEEEeeccCcchhhhhh
Confidence                  11    14477788754   6999999999999999999999999985

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=3.4e-11  Score=119.22  Aligned_cols=146  Identities=14%  Similarity=0.276  Sum_probs=103.1

Q ss_pred             EEEEEeCCCCEEEEEeC-----------CeEEEEECCC-CeEEEEEeC-CCCCeEEEEEcCCCCEEEE--EECCCcEEEE
Q 005235          543 VSSVFHPTRSIFFVSTK-----------KNIRVYDLLK-QRLIKKLET-GLKEVSSIAIHPAGDNLIV--GSREGKLCWF  607 (707)
Q Consensus       543 ~~v~fspd~~~l~v~sd-----------g~I~iwDl~~-~~~~~~l~~-~~~~I~sl~~spdg~~L~s--Gs~Dg~I~vw  607 (707)
                      ..+.|+|+|.+|++-.+           +...||-++. +..+..+.. ..++|.+++|+|+|+.||+  |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35789999988776432           2355555532 334444433 3356999999999998755  4567899999


Q ss_pred             ECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235          608 DMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD---CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC  684 (707)
Q Consensus       608 Dl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l  684 (707)
                      |++ . .++..+  +...++.|.|||+|++||+|+.+   |.|.+||..      +..   ++.... |. .    +..+
T Consensus        89 d~~-~-~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~------~~~---~i~~~~-~~-~----~t~~  149 (194)
T PF08662_consen   89 DVK-G-KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR------KKK---KISTFE-HS-D----ATDV  149 (194)
T ss_pred             cCc-c-cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC------CCE---Eeeccc-cC-c----EEEE
Confidence            997 3 555555  45678999999999999998743   679999654      222   133322 22 2    8999


Q ss_pred             EEcCCCCEEEEEeC------CCcEEEEeC
Q 005235          685 KFHPRQPWLFTAGA------DSVIRLYCH  707 (707)
Q Consensus       685 ~fspdg~~L~s~g~------Dg~IrlWdl  707 (707)
                      +|+|+|++|++++.      |+.++||++
T Consensus       150 ~WsPdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  150 EWSPDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             EEcCCCCEEEEEEeccceeccccEEEEEe
Confidence            99999999998874      788999974

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.8e-10  Score=123.78  Aligned_cols=247  Identities=12%  Similarity=0.155  Sum_probs=169.3

Q ss_pred             CCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh-cccccceeeeccc------
Q 005235          397 DGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE-QRRVKDLLHVETP------  467 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~-~~~~~~v~~~~~~------  467 (707)
                      .-.+++|+++++.....+..  ... +++.|+.|.  .+++--..+.|.+|++....... .-+...+....++      
T Consensus       104 ~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~  180 (566)
T KOG2315|consen  104 NPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPP  180 (566)
T ss_pred             CCceeeeeeccceehhheehhhhcC-cccccccch--hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCc
Confidence            34588999999766666665  222 699999998  57777788899999987743211 1112222222111      


Q ss_pred             ------ccccCCCCcEEEEecCCccceE----EeccCCCeEEEEEcCCCCEEE-EEe--CCC------CccEEEEEECCC
Q 005235          468 ------TAPDDNMASIVSWLQHDKLDGI----RLRHFKMVSSVEWHRRGDYLS-TVM--PAG------ESRAIFMHQLSK  528 (707)
Q Consensus       468 ------~~~~~~d~~i~iW~~~~~~~~~----~~~h~~~V~~v~~sp~g~~la-t~s--~dg------~~~~V~Iwdl~~  528 (707)
                            ....+.-..+++|.........    ..-....=..+.|++.|.-|+ .++  -|.      +..++++.++.+
T Consensus       181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g  260 (566)
T KOG2315|consen  181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG  260 (566)
T ss_pred             eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence                  2234555678888766221111    111223335678988877433 222  222      356888888885


Q ss_pred             CceeeeeeccCCCeEEEEEeCCCCEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---C
Q 005235          529 KLSHRIPFKLHGLPVSSVFHPTRSIFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---G  602 (707)
Q Consensus       529 ~~~~~~~~~~~~~V~~v~fspd~~~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g  602 (707)
                      .... .++...++|.++.|+|++..|+++.   -..+.|||++ +.++..+.  .++-+++-|+|.|++|+.++.+   |
T Consensus       261 ~s~~-V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G  336 (566)
T KOG2315|consen  261 ESVS-VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPG  336 (566)
T ss_pred             ceEE-EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCC
Confidence            5554 6667899999999999999888865   3889999987 66665554  4567899999999999887765   7


Q ss_pred             cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEecc
Q 005235          603 KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD------DCTAYVFHGM  653 (707)
Q Consensus       603 ~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~------Dg~I~Vwd~~  653 (707)
                      .|-|||+.+. +++..+..-.  -+-+.|+|+|.+|++++.      |+.++|||..
T Consensus       337 ~mEvwDv~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  337 DMEVWDVPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ceEEEeccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            8999999874 6676666433  456899999999998873      7889999864

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=1.8e-09  Score=116.14  Aligned_cols=301  Identities=13%  Similarity=0.161  Sum_probs=193.9

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEE-----EEe-----CCeEEEEECCCCCc
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLA-----VSV-----GQDVLILNTGLGNE  452 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla-----~s~-----d~~V~lwd~~~~~~  452 (707)
                      +|+.++.+ +.-+.++.|+|++..++..+.+.... .+.++.|+|-|. .|.+     ...     .-.+.+|++.++..
T Consensus        41 ~~S~~G~l-fA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~-yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~  117 (566)
T KOG2315|consen   41 AYSNNGRL-FAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGN-YLLTWEPWAIYGPKNASNPNVLVYNVETGVQ  117 (566)
T ss_pred             EEcCCCcE-EEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeeccccc-ccccccccccccCCCCCCCceeeeeecccee
Confidence            35555544 44566778999999988655454445 899999999983 3332     112     23577999888432


Q ss_pred             --hhcccccceeeeccc----ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC--EEEEE--eCCCCccEEE
Q 005235          453 --EEQRRVKDLLHVETP----TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD--YLSTV--MPAGESRAIF  522 (707)
Q Consensus       453 --~~~~~~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~--~lat~--s~dg~~~~V~  522 (707)
                        .++.....-....|+    ++.--..+.+.+|+..+-......-|...|+.+.+||.+.  .+|+-  ..+|....|+
T Consensus       118 ~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vr  197 (566)
T KOG2315|consen  118 RSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVR  197 (566)
T ss_pred             hhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEE
Confidence              111111111233333    3334446678888887644444455788899999999743  33332  2344567999


Q ss_pred             EEECCCCceeeeeec----cCCCeEEEEEeCCCCEEEE--Ee--C---------CeEEEEECCCCeEEEEEeCCCCCeEE
Q 005235          523 MHQLSKKLSHRIPFK----LHGLPVSSVFHPTRSIFFV--ST--K---------KNIRVYDLLKQRLIKKLETGLKEVSS  585 (707)
Q Consensus       523 Iwdl~~~~~~~~~~~----~~~~V~~v~fspd~~~l~v--~s--d---------g~I~iwDl~~~~~~~~l~~~~~~I~s  585 (707)
                      ||........ .++.    ....=..+.|++-|.-|++  .+  |         .+++++++....++-.+. ..++|.+
T Consensus       198 i~~~~~~~~~-~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhd  275 (566)
T KOG2315|consen  198 IYKYPEEGQH-QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHD  275 (566)
T ss_pred             Eecccccccc-chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceE
Confidence            9998733222 2221    1222235677776654332  22  3         368888888445555554 4589999


Q ss_pred             EEEcCCCCEEEE--EECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccCCCC
Q 005235          586 IAIHPAGDNLIV--GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD---CTAYVFHGMVYSDLNQ  660 (707)
Q Consensus       586 l~~spdg~~L~s--Gs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~~  660 (707)
                      +.|+|+|+-+++  |-+-..+.|||++-  .++..+  ..++=+++-|+|.|++++.|+-+   |.|-|||+..      
T Consensus       276 v~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n------  345 (566)
T KOG2315|consen  276 VTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN------  345 (566)
T ss_pred             EEECCCCCEEEEEEecccceEEEEcCCC--CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc------
Confidence            999999977654  56677899999972  455444  46777899999999999888754   7999997643      


Q ss_pred             CCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC------CCcEEEEeC
Q 005235          661 NPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA------DSVIRLYCH  707 (707)
Q Consensus       661 ~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~------Dg~IrlWdl  707 (707)
                      ..+   +..+..-.      -+-+.|+|||.+|+|++.      |+.++||++
T Consensus       346 ~K~---i~~~~a~~------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  346 RKL---IAKFKAAN------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             hhh---ccccccCC------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            222   33333222      566899999999998874      688999974

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.37  E-value=5.7e-11  Score=120.63  Aligned_cols=227  Identities=15%  Similarity=0.152  Sum_probs=162.1

Q ss_pred             EEEEEeCCCcEEEEe-CCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          390 LEYKGSTDGTVRIWE-VESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd-~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      -+++.+.|.++|||- ...|+.-..+.+  ..+++++.+.+.. ..|+++-..|++.-+.+...-..             
T Consensus        38 gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnk-------------  103 (404)
T KOG1409|consen   38 GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNK-------------  103 (404)
T ss_pred             CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhh-------------
Confidence            588899999999995 345665555555  7889999999988 45666667777776654321000             


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEE
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV  546 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~  546 (707)
                             ...+          .....|...|..+-|+-...++++.+.|.   .+.-+-...+... ..+......+++.
T Consensus       104 -------m~~~----------r~~~~h~~~v~~~if~~~~e~V~s~~~dk---~~~~hc~e~~~~l-g~Y~~~~~~t~~~  162 (404)
T KOG1409|consen  104 -------MTFL----------KDYLAHQARVSAIVFSLTHEWVLSTGKDK---QFAWHCTESGNRL-GGYNFETPASALQ  162 (404)
T ss_pred             -------cchh----------hhhhhhhcceeeEEecCCceeEEEecccc---ceEEEeeccCCcc-cceEeeccCCCCc
Confidence                   0001          12357889999999999899999999876   5554444444332 1111111111222


Q ss_pred             EeCCCCEEEEEe-CCeEEEEEC--CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235          547 FHPTRSIFFVST-KKNIRVYDL--LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP  623 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl--~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~  623 (707)
                      |.-.  +.++|. .|.|.+..+  ..-.++.++.+|.+.+.+++|.|....|++|..|..+.+||+-........+.+|.
T Consensus       163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~  240 (404)
T KOG1409|consen  163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN  240 (404)
T ss_pred             eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch
Confidence            2111  455554 455555443  34578889999999999999999999999999999999999986655667788999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          624 KDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      ..|..+..-+--+.+.|++.||.|-+|++.
T Consensus       241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  241 DKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            999999998888899999999999999876

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=3.8e-10  Score=126.02  Aligned_cols=237  Identities=12%  Similarity=0.162  Sum_probs=149.3

Q ss_pred             cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccCCCC
Q 005235          399 TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA  475 (707)
Q Consensus       399 tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~  475 (707)
                      .|.++|...+...........+.+.+|+|||+ .|+.++..   ..|.+|++.++..                       
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~-----------------------  235 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRR-----------------------  235 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCE-----------------------
Confidence            47778876555443445577899999999994 55555533   2577777655421                       


Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF  554 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l  554 (707)
                                  ..+....+.+...+|+|+|+.|+......+...|.++|+.++...  .+ .+.+......|+|++..|
T Consensus       236 ------------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~--~lt~~~~~~~~~~~spDg~~i  301 (430)
T PRK00178        236 ------------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS--RVTNHPAIDTEPFWGKDGRTL  301 (430)
T ss_pred             ------------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EcccCCCCcCCeEECCCCCEE
Confidence                        111222334557899999999886544333458999999887654  34 555566778999999988


Q ss_pred             EEEeC----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCCCcceEEeecCCCCEE
Q 005235          555 FVSTK----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG---KLCWFDMDLSSKPYRVLKCHPKDIT  627 (707)
Q Consensus       555 ~v~sd----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---~I~vwDl~~~~~~~~~l~~h~~~I~  627 (707)
                      +..++    ..|.++|+.+++... +..........+|+|+|+.|+..+.++   .|.++|+.++ . .+.+.. .....
T Consensus       302 ~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-~-~~~lt~-~~~~~  377 (430)
T PRK00178        302 YFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-S-VRILTD-TSLDE  377 (430)
T ss_pred             EEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC-C-EEEccC-CCCCC
Confidence            77652    368888888776433 332223345678999999998876543   4888998865 2 333432 22334


Q ss_pred             EEEEcCCCCEEEEEeCC-CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          628 NVAFHRSYPLFASCSDD-CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       628 ~vafspdg~llaSgs~D-g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      ...|+|+|++++.++.+ |.-.||-+    ++....    ...+..+.+.    +...+|+|-
T Consensus       378 ~p~~spdg~~i~~~~~~~g~~~l~~~----~~~g~~----~~~l~~~~g~----~~~p~ws~~  428 (430)
T PRK00178        378 SPSVAPNGTMLIYATRQQGRGVLMLV----SINGRV----RLPLPTAQGE----VREPSWSPY  428 (430)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEE----ECCCCc----eEECcCCCCC----cCCCccCCC
Confidence            67899999988766643 44444422    222211    2234434333    777888874

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=5.2e-12  Score=133.05  Aligned_cols=283  Identities=15%  Similarity=0.144  Sum_probs=199.1

Q ss_pred             CCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccce-ecccccccccccccceeeeeEEEcCcccc
Q 005235          290 KLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTS-LRSVPAYENAVKDSFERCMDLYLCPRVRK  361 (707)
Q Consensus       290 ~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~-lr~v~~~~~~i~e~f~rcldL~l~pr~~k  361 (707)
                      +|.+|..     .||..|..|++.+.          |+.+  |.|..... |+...+|.+-+       ..-.|-     
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSD----------D~~vv~WdW~~~~~~l~f~SGH~~Nv-------fQaKFi-----  194 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSD----------DLQVVVWDWVSGSPKLSFESGHCNNV-------FQAKFI-----  194 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCc----------cceEEeehhhccCcccccccccccch-------hhhhcc-----
Confidence            6677766     59999999999887          7776  76766554 33333443332       221121     


Q ss_pred             ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCC-CCeEEEEE---ecCCcEEEEEEccCCCccEEEEE
Q 005235          362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVE-SGRCLRVL---EIGEAIQYVAWNPLPELPVLAVS  437 (707)
Q Consensus       362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~-tg~~l~~l---~~~~~V~~v~~spdg~~~lla~s  437 (707)
                                           ||. ....+++++.||.|++=.+. +|.+..+.   ++.++|+-++.-|+....+++++
T Consensus       195 ---------------------P~s-~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~g  252 (559)
T KOG1334|consen  195 ---------------------PFS-GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCG  252 (559)
T ss_pred             ---------------------CCC-CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccc
Confidence                                 122 23467888999999998765 45444332   33899999999999888899999


Q ss_pred             eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC---CeEEEEEcCCCC-EEEEEe
Q 005235          438 VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK---MVSSVEWHRRGD-YLSTVM  513 (707)
Q Consensus       438 ~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~---~V~~v~~sp~g~-~lat~s  513 (707)
                      .|+.|.-+|+..+.......                               ....+..   ....++.+|... +|++++
T Consensus       253 eD~~v~~~Dlr~~~pa~~~~-------------------------------cr~~~~~~~v~L~~Ia~~P~nt~~faVgG  301 (559)
T KOG1334|consen  253 EDAVVFHIDLRQDVPAEKFV-------------------------------CREADEKERVGLYTIAVDPRNTNEFAVGG  301 (559)
T ss_pred             cccceeeeeeccCCccceee-------------------------------eeccCCccceeeeeEecCCCCccccccCC
Confidence            99999999987654321000                               0111222   456788888655 788888


Q ss_pred             CCCCccEEEEEECCCCcee-----eeee-------ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC--C--------
Q 005235          514 PAGESRAIFMHQLSKKLSH-----RIPF-------KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK--Q--------  570 (707)
Q Consensus       514 ~dg~~~~V~Iwdl~~~~~~-----~~~~-------~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~--~--------  570 (707)
                      .|.   .+++||.+.-...     ...|       ...-.|+|++|+.++.-|+++. |-.|+++.-..  |        
T Consensus       302 ~dq---f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~  378 (559)
T KOG1334|consen  302 SDQ---FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP  378 (559)
T ss_pred             hhh---hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc
Confidence            877   8999997653221     0122       2235789999997766555554 88899995432  2        


Q ss_pred             --eEEEE-EeCCCCC--eEEEEE-cCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235          571 --RLIKK-LETGLKE--VSSIAI-HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD  644 (707)
Q Consensus       571 --~~~~~-l~~~~~~--I~sl~~-spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D  644 (707)
                        ..++. +++|.+.  |.++-| -|...++++||.-|.|.||+-.++ ..+..+.+-..-|+|+.=||--++|||++-|
T Consensus       379 ~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAsSGid  457 (559)
T KOG1334|consen  379 REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLASSGID  457 (559)
T ss_pred             hhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhccCCc
Confidence              23333 6777543  666655 678899999999999999999877 7788888877799999999999999999999


Q ss_pred             CcEEEEe
Q 005235          645 CTAYVFH  651 (707)
Q Consensus       645 g~I~Vwd  651 (707)
                      .-|+||-
T Consensus       458 ~DVKIWT  464 (559)
T KOG1334|consen  458 HDVKIWT  464 (559)
T ss_pred             cceeeec
Confidence            9999994

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.35  E-value=1.1e-10  Score=134.73  Aligned_cols=273  Identities=18%  Similarity=0.183  Sum_probs=174.1

Q ss_pred             EeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEe
Q 005235          403 WEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWL  481 (707)
Q Consensus       403 Wd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~  481 (707)
                      |+. .|..+..+.. ...|..++.++.....+++++.||+|++|+...-...    .             +.......| 
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~----~-------------~s~rS~lty- 1094 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE----G-------------GSARSELTY- 1094 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC----c-------------ceeeeeEEE-
Confidence            775 4666665544 6777788887766457888999999999997543111    0             000111122 


Q ss_pred             cCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee------eee--ccCCCeEEE-EEeC-CC
Q 005235          482 QHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR------IPF--KLHGLPVSS-VFHP-TR  551 (707)
Q Consensus       482 ~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~------~~~--~~~~~V~~v-~fsp-d~  551 (707)
                               ....+.+.++...+.|++||+++.||   .|.++++.......      +..  ...+.+.++ +|.. .+
T Consensus      1095 ---------s~~~sr~~~vt~~~~~~~~Av~t~DG---~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~ 1162 (1431)
T KOG1240|consen 1095 ---------SPEGSRVEKVTMCGNGDQFAVSTKDG---SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQ 1162 (1431)
T ss_pred             ---------eccCCceEEEEeccCCCeEEEEcCCC---eEEEEEccccccccceeeeeecccccCCCceEEeeccccccc
Confidence                     22567899999999999999999998   99999987621110      111  223333333 3322 23


Q ss_pred             -CEEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-cCCCCE
Q 005235          552 -SIFFVST-KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-CHPKDI  626 (707)
Q Consensus       552 -~~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-~h~~~I  626 (707)
                       ..++.++ -+.|..||+++.....+++  ...+.|++++++|.+.++++|+..|.+.+||++-. .++..+. .+..+|
T Consensus      1163 S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i 1241 (1431)
T KOG1240|consen 1163 SHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPI 1241 (1431)
T ss_pred             ceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC-ceeecccCcccCCc
Confidence             3667777 5899999999876554443  33478999999999999999999999999999976 5665554 345788


Q ss_pred             EEEEEcCCCC---EEEE-Ee-CCCcEEEEecccccCCCC--CCcccceEEeeCCCC----CCCCCeeEEEEcCCCCEEEE
Q 005235          627 TNVAFHRSYP---LFAS-CS-DDCTAYVFHGMVYSDLNQ--NPLIVPLEILRGHTS----SNGRGVMDCKFHPRQPWLFT  695 (707)
Q Consensus       627 ~~vafspdg~---llaS-gs-~Dg~I~Vwd~~~~~Dl~~--~~~~~pl~~l~gh~~----~~~~gV~~l~fspdg~~L~s  695 (707)
                      +.|..+|-.+   ..++ ++ ..+.|-+|++..+..-..  .....|.-.......    +.......+.+...++++.+
T Consensus      1242 ~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1242 RHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT 1321 (1431)
T ss_pred             ceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee
Confidence            9998888655   4444 44 567899996543210000  000000000000000    11112344556666789999


Q ss_pred             EeCCCcEEEEeC
Q 005235          696 AGADSVIRLYCH  707 (707)
Q Consensus       696 ~g~Dg~IrlWdl  707 (707)
                      ||.|..||.||.
T Consensus      1322 ggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDP 1333 (1431)
T ss_pred             cCCccceeeccC
Confidence            999999999984

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=3.8e-10  Score=126.39  Aligned_cols=237  Identities=13%  Similarity=0.171  Sum_probs=144.6

Q ss_pred             cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEe-CC--eEEEEECCCCCchhcccccceeeecccccccCCCC
Q 005235          399 TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV-GQ--DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA  475 (707)
Q Consensus       399 tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~-d~--~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~  475 (707)
                      .|.++|...............+.+..|+|||+ .|+.++. ++  .|.+|++.++..                       
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~-----------------------  254 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVR-----------------------  254 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCe-----------------------
Confidence            56777865544433344477899999999994 4554443 22  466667654421                       


Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF  554 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l  554 (707)
                                  ..+....+.....+|+|+|+.|+......+...|.++++.++...  .+ .+.......+|+|+++.|
T Consensus       255 ------------~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~--~lt~~~~~~~~p~wSpDG~~I  320 (448)
T PRK04792        255 ------------EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT--RITRHRAIDTEPSWHPDGKSL  320 (448)
T ss_pred             ------------EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE--ECccCCCCccceEECCCCCEE
Confidence                        111112233446899999998886544333457889999877653  44 555566788999999988


Q ss_pred             EEEe--C--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C--cEEEEECCCCCcceEEeecCCCCEE
Q 005235          555 FVST--K--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-G--KLCWFDMDLSSKPYRVLKCHPKDIT  627 (707)
Q Consensus       555 ~v~s--d--g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g--~I~vwDl~~~~~~~~~l~~h~~~I~  627 (707)
                      +..+  +  ..|.++|+.+++.. .+..........+|+|+|++|+..+.+ +  .|.++|+.++ . ...+... ....
T Consensus       321 ~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~-~~d~  396 (448)
T PRK04792        321 IFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG-A-MQVLTST-RLDE  396 (448)
T ss_pred             EEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC-C-eEEccCC-CCCC
Confidence            7765  2  35777788777643 332222334567999999999876653 3  4566777665 3 3334322 2233


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          628 NVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       628 ~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      ...|+|+|+.|+..+. +|.-.+|-+    +.. +..   ...+..+.+.    +...+|+|-
T Consensus       397 ~ps~spdG~~I~~~~~~~g~~~l~~~----~~~-G~~---~~~l~~~~g~----~~~p~Wsp~  447 (448)
T PRK04792        397 SPSVAPNGTMVIYSTTYQGKQVLAAV----SID-GRF---KARLPAGQGE----VKSPAWSPF  447 (448)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEE----ECC-CCc---eEECcCCCCC----cCCCccCCC
Confidence            5689999997766554 444333321    221 221   3445444444    778889873

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.35  E-value=6.3e-11  Score=122.22  Aligned_cols=214  Identities=14%  Similarity=0.137  Sum_probs=162.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCCe----EEEEEecCCcEEEEEEccCCCccEEE-EEeC--CeEEEEECCCCCchhcccccce
Q 005235          389 YLEYKGSTDGTVRIWEVESGR----CLRVLEIGEAIQYVAWNPLPELPVLA-VSVG--QDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~----~l~~l~~~~~V~~v~~spdg~~~lla-~s~d--~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      ..|++|-.+|.+.+|....+-    .+..+.....+..|.-++... .|++ +|..  +.+.|||+...           
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~-----------  183 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQS-----------  183 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCC-ceEecCchhcccceeeeecccc-----------
Confidence            478888999999999988443    444566678888888888774 4555 6666  68999998654           


Q ss_pred             eeecccccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCceeeeee-c
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K  537 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~  537 (707)
                                     ..+|...+-..-. -....-.++++.|-+.  ...||+++.-+   .|++||.+.++.....| -
T Consensus       184 ---------------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h---qvR~YDt~~qRRPV~~fd~  245 (412)
T KOG3881|consen  184 ---------------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH---QVRLYDTRHQRRPVAQFDF  245 (412)
T ss_pred             ---------------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecce---eEEEecCcccCcceeEecc
Confidence                           3455443222111 1122335678888877  78999999877   99999999776554666 6


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235          538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP  615 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~  615 (707)
                      ...+++++...|.++++++|. -+.+..||++++++... +.+-.+.|++|..||.+.+|++++-|+.|+|||+.+. ++
T Consensus       246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr-kl  324 (412)
T KOG3881|consen  246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR-KL  324 (412)
T ss_pred             ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc-hh
Confidence            678999999999999999998 79999999999988876 7788889999999999999999999999999999975 43


Q ss_pred             eEEeecCCCCEEEEEEcCC
Q 005235          616 YRVLKCHPKDITNVAFHRS  634 (707)
Q Consensus       616 ~~~l~~h~~~I~~vafspd  634 (707)
                      +... +-...++++.+.++
T Consensus       325 l~kv-YvKs~lt~il~~~~  342 (412)
T KOG3881|consen  325 LHKV-YVKSRLTFILLRDD  342 (412)
T ss_pred             hhhh-hhhccccEEEecCC
Confidence            3222 12455677777554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=3.6e-10  Score=125.68  Aligned_cols=216  Identities=14%  Similarity=0.130  Sum_probs=134.0

Q ss_pred             EEEEecCCccceEEeccCCCeEEEEEcCCCCE--EEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEE
Q 005235          477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDY--LSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIF  554 (707)
Q Consensus       477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~--lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l  554 (707)
                      +.+.+..+.....+......+.+-+|+|+|+.  ++..+...+...|.+.++.++... ......+.....+|+|||+.|
T Consensus       167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~L  245 (428)
T PRK01029        167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLL  245 (428)
T ss_pred             EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEE
Confidence            34444444433344445556778899999986  433444333568999999887654 222455566678999999988


Q ss_pred             EEEeC--C----eEEEEECCCC--eEEEEEeC-CCCCeEEEEEcCCCCEEEEEE-CCCcEEEE--ECCCCCcceEEeecC
Q 005235          555 FVSTK--K----NIRVYDLLKQ--RLIKKLET-GLKEVSSIAIHPAGDNLIVGS-REGKLCWF--DMDLSSKPYRVLKCH  622 (707)
Q Consensus       555 ~v~sd--g----~I~iwDl~~~--~~~~~l~~-~~~~I~sl~~spdg~~L~sGs-~Dg~I~vw--Dl~~~~~~~~~l~~h  622 (707)
                      +..++  |    .+.+|++..+  .....+.. ........+|+|||+.|+..+ .+|...+|  ++.........+..+
T Consensus       246 af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~  325 (428)
T PRK01029        246 AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK  325 (428)
T ss_pred             EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence            87652  2    3444777652  12233332 223456789999999888766 35654444  554322334556555


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC-
Q 005235          623 PKDITNVAFHRSYPLFASCSDD---CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA-  698 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~-  698 (707)
                      ...+...+|||+|+.|+..+.+   ..|.+|+.      .++.    ...+......    +..+.|+|+|++|+..+. 
T Consensus       326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl------~~g~----~~~Lt~~~~~----~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL------ATGR----DYQLTTSPEN----KESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             CCCccceeECCCCCEEEEEEcCCCCcEEEEEEC------CCCC----eEEccCCCCC----ccceEECCCCCEEEEEECC
Confidence            5677889999999988876543   35788843      3333    2334332222    678999999998865433 


Q ss_pred             --CCcEEEEeC
Q 005235          699 --DSVIRLYCH  707 (707)
Q Consensus       699 --Dg~IrlWdl  707 (707)
                        .+.|.+|++
T Consensus       392 ~g~~~L~~vdl  402 (428)
T PRK01029        392 SNESELYLISL  402 (428)
T ss_pred             CCCceEEEEEC
Confidence              245666664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=5.9e-10  Score=124.54  Aligned_cols=204  Identities=15%  Similarity=0.106  Sum_probs=135.6

Q ss_pred             EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEE
Q 005235          477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFV  556 (707)
Q Consensus       477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v  556 (707)
                      +.+++..+.....+..+...+...+|+|+|++|+.++.+.....|.+|++.++... ......+.+....|+|+|+.|+.
T Consensus       181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEE
Confidence            44445554444445567778899999999999998876654558999999888654 22244555667999999998875


Q ss_pred             Ee--CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCCcceEEeecCCCCEEEE
Q 005235          557 ST--KK--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EG--KLCWFDMDLSSKPYRVLKCHPKDITNV  629 (707)
Q Consensus       557 ~s--dg--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg--~I~vwDl~~~~~~~~~l~~h~~~I~~v  629 (707)
                      ..  ++  .|.+||+.+++.. .+..+........|+|+|+.|+..+. +|  .|+++|+.++ . ...+..........
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-~-~~~lt~~~~~~~~~  336 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-R-AERVTFVGNYNARP  336 (430)
T ss_pred             EEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-C-EEEeecCCCCccce
Confidence            43  33  6888999887643 45555455677899999998877664 33  5777787765 3 23333222334567


Q ss_pred             EEcCCCCEEEEEeC-CC--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235          630 AFHRSYPLFASCSD-DC--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD  699 (707)
Q Consensus       630 afspdg~llaSgs~-Dg--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D  699 (707)
                      +|+|+|..|+..+. ++  .|.+|+      +.++.    ...+.. ...    .....|+|+|.+|+.++.+
T Consensus       337 ~~Spdg~~i~~~~~~~~~~~l~~~d------l~tg~----~~~lt~-~~~----~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        337 RLSADGKTLVMVHRQDGNFHVAAQD------LQRGS----VRILTD-TSL----DESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEE------CCCCC----EEEccC-CCC----CCCceECCCCCEEEEEEec
Confidence            89999998887664 33  466663      33332    223322 111    3356899999998766543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.31  E-value=4.5e-09  Score=113.89  Aligned_cols=253  Identities=16%  Similarity=0.158  Sum_probs=160.7

Q ss_pred             CCCCCCcccCCCCcEEEEEeC----CCcEEEEeCCC--CeE--EEEEe-cCCcEEEEEEccCCCccEEEEE-eCCeEEEE
Q 005235          376 PSRKDLKPYPVACYLEYKGST----DGTVRIWEVES--GRC--LRVLE-IGEAIQYVAWNPLPELPVLAVS-VGQDVLIL  445 (707)
Q Consensus       376 p~~~~l~pfp~~~~~l~sgs~----DgtVrIWd~~t--g~~--l~~l~-~~~~V~~v~~spdg~~~lla~s-~d~~V~lw  445 (707)
                      +.|..|..-| +..+||+...    +|.|..|.+..  |.+  +.... .......++++|++. .++++. .++.|.++
T Consensus        37 ~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~  114 (345)
T PF10282_consen   37 ENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVF  114 (345)
T ss_dssp             SSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEE
T ss_pred             CCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEE
Confidence            3444444333 4457777655    67999998875  443  33333 266778899999994 555555 58899999


Q ss_pred             ECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEE
Q 005235          446 NTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQ  525 (707)
Q Consensus       446 d~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwd  525 (707)
                      ++........                    .+.++...+..............++.|+|+|+++++....  ...|.+|+
T Consensus       115 ~l~~~g~l~~--------------------~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~v~~~~  172 (345)
T PF10282_consen  115 PLDDDGSLGE--------------------VVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADRVYVYD  172 (345)
T ss_dssp             EECTTSEEEE--------------------EEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTEEEEEE
T ss_pred             EccCCcccce--------------------eeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCEEEEEE
Confidence            9866321100                    0011111000000001223557899999999999887653  34899999


Q ss_pred             CCCCc--eee-e--eeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC--CCe--EEEEEeC------CCCCeEEEEE
Q 005235          526 LSKKL--SHR-I--PFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL--KQR--LIKKLET------GLKEVSSIAI  588 (707)
Q Consensus       526 l~~~~--~~~-~--~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~--~~~--~~~~l~~------~~~~I~sl~~  588 (707)
                      +....  ... .  .+........++|+|+++++++..  +++|.+|++.  ++.  .+..+..      +......|++
T Consensus       173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i  252 (345)
T PF10282_consen  173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI  252 (345)
T ss_dssp             E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE
T ss_pred             EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE
Confidence            98765  321 1  225667789999999999999987  6999999988  443  3333332      1235889999


Q ss_pred             cCCCCEEEEEE-CCCcEEEEECCCCC---cceEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q 005235          589 HPAGDNLIVGS-REGKLCWFDMDLSS---KPYRVLKCHPKDITNVAFHRSYPLFASCS-DDCTAYVFHG  652 (707)
Q Consensus       589 spdg~~L~sGs-~Dg~I~vwDl~~~~---~~~~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~  652 (707)
                      +|+|++|.++. ..+.|.+|+++...   +.+..+......-+.++|+|+|++|+++. .++.|.+|++
T Consensus       253 spdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  253 SPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             -TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            99999988765 45679999995322   23334444445589999999999888776 6679999965

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.31  E-value=1.8e-10  Score=116.89  Aligned_cols=310  Identities=15%  Similarity=0.182  Sum_probs=192.3

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCe-----EEEEEec-------------CCcEEEEEEccCCCc-cEEEEEeCCeEE
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGR-----CLRVLEI-------------GEAIQYVAWNPLPEL-PVLAVSVGQDVL  443 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~-----~l~~l~~-------------~~~V~~v~~spdg~~-~lla~s~d~~V~  443 (707)
                      -|...+.+||+|..+|.|.++.-....     ....++.             ...|+.+.|.++++. .++.++.|.+|+
T Consensus        32 ef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiK  111 (433)
T KOG1354|consen   32 EFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIK  111 (433)
T ss_pred             EeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCccee
Confidence            377788999999999999999754321     1122211             577999999998754 567778899999


Q ss_pred             EEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC-------ccceE-EeccCCCeEEEEEcCCCCEEEEEeCC
Q 005235          444 ILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD-------KLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPA  515 (707)
Q Consensus       444 lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~-------~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~d  515 (707)
                      +|.+........+.+..-..      ..+.-.++++=-...       ....+ ...|..-|.+++++.|+..++++.. 
T Consensus       112 lWKi~er~~k~~~~~~~~~~------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd-  184 (433)
T KOG1354|consen  112 LWKIRERGSKKEGYNLPEEG------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD-  184 (433)
T ss_pred             eeeeeccccccccccccccC------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc-
Confidence            99986543322110000000      000000111100000       00111 3368889999999999999988763 


Q ss_pred             CCccEEEEEECCCCceeeeee---c------cCCCeEEEEEeCCCCEEEE-Ee-CCeEEEEECCCCeEE----EEEe---
Q 005235          516 GESRAIFMHQLSKKLSHRIPF---K------LHGLPVSSVFHPTRSIFFV-ST-KKNIRVYDLLKQRLI----KKLE---  577 (707)
Q Consensus       516 g~~~~V~Iwdl~~~~~~~~~~---~------~~~~V~~v~fspd~~~l~v-~s-dg~I~iwDl~~~~~~----~~l~---  577 (707)
                      =   .|.+|.+...... ..+   +      ...-|++..|||....+++ ++ .|+|++.|++...+-    +.+.   
T Consensus       185 L---RINLWnlei~d~s-FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  185 L---RINLWNLEIIDQS-FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             e---eeeeccccccCCc-eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            2   7999998754332 222   1      2346889999997544443 33 799999999853211    1111   


Q ss_pred             ---------CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC------------CE---EEEEEcC
Q 005235          578 ---------TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK------------DI---TNVAFHR  633 (707)
Q Consensus       578 ---------~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~------------~I---~~vafsp  633 (707)
                               .-...|+.+.|+++|+++++-++- +|++||+....+|+.+.+-|..            +|   ..++|+-
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence                     112447889999999999988764 8999999877789988887642            22   4588999


Q ss_pred             CCCEEEEEeCCCcEEEEeccccc--CCC---------CCCcccceEEeeCCCC-C---------CCCCeeEEEEcCCCCE
Q 005235          634 SYPLFASCSDDCTAYVFHGMVYS--DLN---------QNPLIVPLEILRGHTS-S---------NGRGVMDCKFHPRQPW  692 (707)
Q Consensus       634 dg~llaSgs~Dg~I~Vwd~~~~~--Dl~---------~~~~~~pl~~l~gh~~-~---------~~~gV~~l~fspdg~~  692 (707)
                      ++..++|||.....++|++..++  |..         ......+-.+..+... .         ....+...+|||....
T Consensus       340 ~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~  419 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENS  419 (433)
T ss_pred             CcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccce
Confidence            99999999999999999743111  000         0111111112211111 0         0122567899999999


Q ss_pred             EEEEeCCCcEEEE
Q 005235          693 LFTAGADSVIRLY  705 (707)
Q Consensus       693 L~s~g~Dg~IrlW  705 (707)
                      ||.+...+ +.+|
T Consensus       420 ia~aatnn-lyif  431 (433)
T KOG1354|consen  420 IAVAATNN-LYIF  431 (433)
T ss_pred             eeeeecCc-eEEe
Confidence            98887654 4444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=5.4e-10  Score=125.19  Aligned_cols=213  Identities=14%  Similarity=0.171  Sum_probs=137.7

Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF  554 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l  554 (707)
                      .+.+++..+.....+..+...+.+..|+|+|++|+.++.......|.++|+.++...  .+ ...+.....+|+|+|+.|
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCEE
Confidence            445556555544455667778999999999999998876544558999999887653  33 334445678999999988


Q ss_pred             EEEe--CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCCcceEEeecCCCCEE
Q 005235          555 FVST--KK--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EG--KLCWFDMDLSSKPYRVLKCHPKDIT  627 (707)
Q Consensus       555 ~v~s--dg--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg--~I~vwDl~~~~~~~~~l~~h~~~I~  627 (707)
                      +.+.  ++  .|.++|+.+++. ..+..+.......+|+|+|+.|+..+. ++  .|+++|+.++ . ...+........
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~-~~~Lt~~g~~~~  353 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-K-VSRLTFEGEQNL  353 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-EEEEecCCCCCc
Confidence            7643  44  488889987764 345555455678899999998877664 33  4666777655 3 333432333345


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC-CCc--EE
Q 005235          628 NVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA-DSV--IR  703 (707)
Q Consensus       628 ~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~-Dg~--Ir  703 (707)
                      ..+|+|+|++|+..+. ++...||-+    ++.++.    +..+.... .    .....|+|+|++|+.++. +|.  +.
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~----dl~~g~----~~~lt~~~-~----d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQ----DLETGA----MQVLTSTR-L----DESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEE----ECCCCC----eEEccCCC-C----CCCceECCCCCEEEEEEecCCceEEE
Confidence            6799999998876654 455556533    333332    22333221 1    334589999998866553 443  44


Q ss_pred             EEe
Q 005235          704 LYC  706 (707)
Q Consensus       704 lWd  706 (707)
                      +++
T Consensus       421 ~~~  423 (448)
T PRK04792        421 AVS  423 (448)
T ss_pred             EEE
Confidence            443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.4e-09  Score=120.94  Aligned_cols=241  Identities=10%  Similarity=0.048  Sum_probs=143.2

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCcc-EE-EEEeCC--eEEEEECCCCCchhcccccceeeecccccccCC
Q 005235          398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELP-VL-AVSVGQ--DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN  473 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~-ll-a~s~d~--~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~  473 (707)
                      ..|.+.|...+...........+.+-+|+|||... ++ ++..++  .|.+.++.++.                      
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~----------------------  222 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA----------------------  222 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC----------------------
Confidence            46777776655443322335667888999999532 22 222333  45555554432                      


Q ss_pred             CCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCcc--EEEEEECCCCc--eeeeee--ccCCCeEEEEE
Q 005235          474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESR--AIFMHQLSKKL--SHRIPF--KLHGLPVSSVF  547 (707)
Q Consensus       474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~--~V~Iwdl~~~~--~~~~~~--~~~~~V~~v~f  547 (707)
                                   ...+....+.....+|+|||+.|+..+...+..  .+.+|++..+.  .. ..+  ...+.....+|
T Consensus       223 -------------~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~-~~lt~~~~~~~~~p~w  288 (428)
T PRK01029        223 -------------GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKP-RRLLNEAFGTQGNPSF  288 (428)
T ss_pred             -------------ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcc-eEeecCCCCCcCCeEE
Confidence                         222333444556789999999998877432122  34446766531  11 223  22344567899


Q ss_pred             eCCCCEEEEEe--CCe--EEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEe
Q 005235          548 HPTRSIFFVST--KKN--IRVYDLLK-QRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVL  619 (707)
Q Consensus       548 spd~~~l~v~s--dg~--I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l  619 (707)
                      +|||+.|+..+  ++.  |.++++.. +.....+..+...+.+.+|||+|+.|+..+.+   ..|.+||+.++ . ...+
T Consensus       289 SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~-~~~L  366 (428)
T PRK01029        289 SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-R-DYQL  366 (428)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-C-eEEc
Confidence            99999877665  454  44555542 33344555555567889999999999877653   36899999876 3 3444


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEe-CC--CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235          620 KCHPKDITNVAFHRSYPLFASCS-DD--CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ  690 (707)
Q Consensus       620 ~~h~~~I~~vafspdg~llaSgs-~D--g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg  690 (707)
                      ......+..+.|+|+|+.|+..+ ..  +.|.+++      +..+.    ...+......    +...+|+|-.
T Consensus       367 t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd------l~~g~----~~~Lt~~~g~----~~~p~Ws~~~  426 (428)
T PRK01029        367 TTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS------LITKK----TRKIVIGSGE----KRFPSWGAFP  426 (428)
T ss_pred             cCCCCCccceEECCCCCEEEEEECCCCCceEEEEE------CCCCC----EEEeecCCCc----ccCceecCCC
Confidence            43344677899999999776443 33  3566663      33332    2223222222    6778898753

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.29  E-value=6.9e-09  Score=107.03  Aligned_cols=267  Identities=15%  Similarity=0.148  Sum_probs=175.5

Q ss_pred             CCcEEEEeCCC--Ce--EEEEEecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeeccccc
Q 005235          397 DGTVRIWEVES--GR--CLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTA  469 (707)
Q Consensus       397 DgtVrIWd~~t--g~--~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~  469 (707)
                      +.-|.+|++.+  |+  .+......+.++-|+|+|++ +.|+++..+   +.|..|.+...                   
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~-------------------   74 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPD-------------------   74 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCC-------------------
Confidence            46699999874  32  22233337888999999999 467777654   44554443321                   


Q ss_pred             ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee---eccCCC-----
Q 005235          470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP---FKLHGL-----  541 (707)
Q Consensus       470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~---~~~~~~-----  541 (707)
                          +|.+..-+.       ......+.+.++++++|++++++....  +.|.++-+........+   +.|.+.     
T Consensus        75 ----~G~Lt~ln~-------~~~~g~~p~yvsvd~~g~~vf~AnY~~--g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~r  141 (346)
T COG2706          75 ----DGRLTFLNR-------QTLPGSPPCYVSVDEDGRFVFVANYHS--GSVSVYPLQADGSLQPVVQVVKHTGSGPHER  141 (346)
T ss_pred             ----CCeEEEeec-------cccCCCCCeEEEECCCCCEEEEEEccC--ceEEEEEcccCCccccceeeeecCCCCCCcc
Confidence                122222111       111223348899999999999998755  59999999764322122   255555     


Q ss_pred             -----eEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEE----EeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEEC
Q 005235          542 -----PVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKK----LETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDM  609 (707)
Q Consensus       542 -----V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~----l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl  609 (707)
                           +..+.|.|++++|++..  -..|.+|++..+++...    +..+ .....|.|||+|++..+.+ -+++|.+|..
T Consensus       142 Q~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G-~GPRHi~FHpn~k~aY~v~EL~stV~v~~y  220 (346)
T COG2706         142 QESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG-AGPRHIVFHPNGKYAYLVNELNSTVDVLEY  220 (346)
T ss_pred             ccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC-CCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence                 88999999999999987  47899999998765422    3333 4468899999999886654 4889999999


Q ss_pred             CCCCcceEEeecC---------CCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235          610 DLSSKPYRVLKCH---------PKDITNVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR  679 (707)
Q Consensus       610 ~~~~~~~~~l~~h---------~~~I~~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~  679 (707)
                      +.....+..++.+         .....+|..+++|++|.++.. ..+|-+|.+..    .++. +..+.....+    +.
T Consensus       221 ~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~----~~g~-L~~~~~~~te----g~  291 (346)
T COG2706         221 NPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP----DGGK-LELVGITPTE----GQ  291 (346)
T ss_pred             cCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC----CCCE-EEEEEEeccC----Cc
Confidence            8743344444433         245678999999998887652 34788886632    2222 1122222223    23


Q ss_pred             CeeEEEEcCCCCEEEEEeCCC-cEEEEe
Q 005235          680 GVMDCKFHPRQPWLFTAGADS-VIRLYC  706 (707)
Q Consensus       680 gV~~l~fspdg~~L~s~g~Dg-~IrlWd  706 (707)
                      .-.+..|+|.+.+|+.++.++ .|.+|.
T Consensus       292 ~PR~F~i~~~g~~Liaa~q~sd~i~vf~  319 (346)
T COG2706         292 FPRDFNINPSGRFLIAANQKSDNITVFE  319 (346)
T ss_pred             CCccceeCCCCCEEEEEccCCCcEEEEE
Confidence            378899999999999888653 466664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.24  E-value=1.1e-08  Score=111.15  Aligned_cols=261  Identities=13%  Similarity=0.154  Sum_probs=162.0

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEecCCcE-EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccc
Q 005235          391 EYKGSTDGTVRIWEVESGRCLRVLEIGEAI-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTA  469 (707)
Q Consensus       391 l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~  469 (707)
                      +++-..+|.|.|.|..+.+.+..+.....+ ..+.|+||| +++++++.|+.|.++|+.+...                 
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~-----------------   70 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKV-----------------   70 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSE-----------------
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccE-----------------
Confidence            345677899999999999999999985555 457899999 4788888899999999876531                 


Q ss_pred             ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---c-----cCCC
Q 005235          470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---K-----LHGL  541 (707)
Q Consensus       470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~-----~~~~  541 (707)
                                        ...........+++++++|+++++++...  +.+.|+|..+.+.. ..+   .     ....
T Consensus        71 ------------------v~~i~~G~~~~~i~~s~DG~~~~v~n~~~--~~v~v~D~~tle~v-~~I~~~~~~~~~~~~R  129 (369)
T PF02239_consen   71 ------------------VATIKVGGNPRGIAVSPDGKYVYVANYEP--GTVSVIDAETLEPV-KTIPTGGMPVDGPESR  129 (369)
T ss_dssp             ------------------EEEEE-SSEEEEEEE--TTTEEEEEEEET--TEEEEEETTT--EE-EEEE--EE-TTTS---
T ss_pred             ------------------EEEEecCCCcceEEEcCCCCEEEEEecCC--CceeEeccccccce-eecccccccccccCCC
Confidence                              11223345678899999999999887532  39999999988776 444   1     2346


Q ss_pred             eEEEEEeCCCCEEEEEe-C-CeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcce
Q 005235          542 PVSSVFHPTRSIFFVST-K-KNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       542 V~~v~fspd~~~l~v~s-d-g~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~  616 (707)
                      +.++..+|.++.++++- + +.|.+.|....+.  ...+.. ........|+|+|++++++ ..++.|.++|..+. +..
T Consensus       130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v  207 (369)
T PF02239_consen  130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLV  207 (369)
T ss_dssp             EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEE
T ss_pred             ceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-cccccccccCcccceeeecccccceeEEEeeccc-eEE
Confidence            77888899999777765 4 8898889776432  234443 3567889999999998775 45678999999876 444


Q ss_pred             EEee----cCCCCEEEEEEcCCC-CEEEEEeCC---------CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCee
Q 005235          617 RVLK----CHPKDITNVAFHRSY-PLFASCSDD---------CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVM  682 (707)
Q Consensus       617 ~~l~----~h~~~I~~vafspdg-~llaSgs~D---------g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~  682 (707)
                      ..+.    .|..++..+ .||.+ +..++....         ..+.+|      +.....   .++.+.....    + .
T Consensus       208 ~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~------d~~~wk---vv~~I~~~G~----g-l  272 (369)
T PF02239_consen  208 ALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVH------DDYAWK---VVKTIPTQGG----G-L  272 (369)
T ss_dssp             EEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-S------TTTBTS---EEEEEE-SSS----S--
T ss_pred             EEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccc------hhhcCe---EEEEEECCCC----c-c
Confidence            4443    234444443 34543 333333221         223333      333333   3666766433    3 6


Q ss_pred             EEEEcCCCCEEEEE----eCCCcEEEEeC
Q 005235          683 DCKFHPRQPWLFTA----GADSVIRLYCH  707 (707)
Q Consensus       683 ~l~fspdg~~L~s~----g~Dg~IrlWdl  707 (707)
                      -+..||++++|...    ...++|.++|.
T Consensus       273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~  301 (369)
T PF02239_consen  273 FIKTHPDSRYVWVDTFLNPDADTVQVIDK  301 (369)
T ss_dssp             -EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred             eeecCCCCccEEeeccCCCCCceEEEEEC
Confidence            77889999999887    44578888873

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=2.9e-11  Score=128.77  Aligned_cols=169  Identities=18%  Similarity=0.259  Sum_probs=131.2

Q ss_pred             eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCC--CCEEEEEECCCcEEEEE
Q 005235          534 IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPA--GDNLIVGSREGKLCWFD  608 (707)
Q Consensus       534 ~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spd--g~~L~sGs~Dg~I~vwD  608 (707)
                      ..+ +|.|-|.|+.|+.+|.+|++|+ |-.+.|||.-..+++..+. +|...|.|+.|-|-  .+.+++|..|..|++||
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            566 9999999999999999999999 7899999998878777764 68888999999884  57899999999999999


Q ss_pred             CCCC---------CcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCC-cccceEEeeCCCCCC
Q 005235          609 MDLS---------SKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNP-LIVPLEILRGHTSSN  677 (707)
Q Consensus       609 l~~~---------~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~-~~~pl~~l~gh~~~~  677 (707)
                      +...         ..+...+..|...|..++-.|+++ .|.+|+.||+|+-+|++......... ....+..+...-.. 
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie-  202 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE-  202 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe-
Confidence            9852         245566778999999999999994 88999999999999776432211111 10111111112222 


Q ss_pred             CCCeeEEEEcCCCC-EEEEEeCCCcEEEEe
Q 005235          678 GRGVMDCKFHPRQP-WLFTAGADSVIRLYC  706 (707)
Q Consensus       678 ~~gV~~l~fspdg~-~L~s~g~Dg~IrlWd  706 (707)
                         ..+++.+|..+ +|+.||.|--++|||
T Consensus       203 ---lk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  203 ---LKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             ---eeeeeecCCCCceEEecCCCchhhhhh
Confidence               67899999887 578888999999987

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.22  E-value=1.3e-09  Score=118.22  Aligned_cols=141  Identities=13%  Similarity=0.121  Sum_probs=120.0

Q ss_pred             CCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC
Q 005235          505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL  580 (707)
Q Consensus       505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~  580 (707)
                      +...++-|...|   .|.++++..+... ..+   .|.+.|.++.++.+-..|.+++ |+.+..|+....+.++...+..
T Consensus        69 ~t~~lvlgt~~g---~v~~ys~~~g~it-~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~  144 (541)
T KOG4547|consen   69 DTSMLVLGTPQG---SVLLYSVAGGEIT-AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK  144 (541)
T ss_pred             CceEEEeecCCc---cEEEEEecCCeEE-EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC
Confidence            344666777766   9999999999887 666   7889999999999888888887 8999999999999999999988


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCC-----CCEEE-EEeCCCcEEEEec
Q 005235          581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-----YPLFA-SCSDDCTAYVFHG  652 (707)
Q Consensus       581 ~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd-----g~lla-Sgs~Dg~I~Vwd~  652 (707)
                      ..+.+++++|||..|++++  +.|.+||+.+. +.+.+|.+|.++|++++|--.     |.+|. ++..+.-|.+|-.
T Consensus       145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  145 PLVSSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             CccceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            8899999999999999887  58999999987 889999999999999999876     55444 4455666788843

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=2.4e-09  Score=115.19  Aligned_cols=256  Identities=9%  Similarity=0.016  Sum_probs=176.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++|-.--.|++||+..-.+...-.. ...|.-.-++.|- ..++....|.+|.+-.-... .....-......+.+.
T Consensus        65 Y~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~-SK~v~L~~DR~IefHak~G~-hy~~RIP~~GRDm~y~  142 (703)
T KOG2321|consen   65 YLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDY-SKSVFLQNDRTIEFHAKYGR-HYRTRIPKFGRDMKYH  142 (703)
T ss_pred             EEEEecccCCceEEEEcccceeeeeecccccceeEEEeccch-hhheEeecCceeeehhhcCe-eeeeecCcCCcccccc
Confidence            5788999999999999876544322222 4555555666665 35666677777765432110 0000000001111111


Q ss_pred             -----ccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-----
Q 005235          468 -----TAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-----  536 (707)
Q Consensus       468 -----~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-----  536 (707)
                           +..++....|..+++..+.. ..+....+.+++|..++-..+|++|+.+|   .|-.||.+..... ..+     
T Consensus       143 ~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g---~VEfwDpR~ksrv-~~l~~~~~  218 (703)
T KOG2321|consen  143 KPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG---VVEFWDPRDKSRV-GTLDAASS  218 (703)
T ss_pred             CCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCc---eEEEecchhhhhh-eeeecccc
Confidence                 45555666777777765433 33555568999999999999999999988   9999999876654 333     


Q ss_pred             --cc-----CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE-eCCCCCeEEEEEcCCC--CEEEEEECCCcEE
Q 005235          537 --KL-----HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL-ETGLKEVSSIAIHPAG--DNLIVGSREGKLC  605 (707)
Q Consensus       537 --~~-----~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l-~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~  605 (707)
                        .+     ...|+++.|+.+|-.+++|+ .|.|.||||++.+++..- .+..-+|..+.|.+.+  ..|++ .....++
T Consensus       219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~k  297 (703)
T KOG2321|consen  219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILK  297 (703)
T ss_pred             cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhh
Confidence              12     23499999999999999998 899999999998765432 3344668999997764  33443 3345689


Q ss_pred             EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      |||-.++ +++..+.. +..++.+++-|++-+|++|-+++.+..|-+.
T Consensus       298 iWd~~~G-k~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  298 IWDECTG-KPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             hcccccC-Cceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            9999988 77777664 4559999999999999999999988888654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.19  E-value=7.5e-09  Score=110.28  Aligned_cols=274  Identities=12%  Similarity=0.157  Sum_probs=173.3

Q ss_pred             CCcEEEEeCCCCeEEEEEec-CCc--EE-EEEEccCCCccEEEEEeCCeEEEEECCCCCc-hhcccc---cceeeeccc-
Q 005235          397 DGTVRIWEVESGRCLRVLEI-GEA--IQ-YVAWNPLPELPVLAVSVGQDVLILNTGLGNE-EEQRRV---KDLLHVETP-  467 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~-~~~--V~-~v~~spdg~~~lla~s~d~~V~lwd~~~~~~-~~~~~~---~~v~~~~~~-  467 (707)
                      +..+.|||+.+|..+..+.. ..+  .+ -+.|+-+.  .+++--....+.|+++ ++.. ....+.   ..+....++ 
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP  183 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP  183 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence            34799999999999999888 222  34 67888887  4555557788999996 3221 111111   111111111 


Q ss_pred             -----------ccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCC--------CccEEEEEECC
Q 005235          468 -----------TAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAG--------ESRAIFMHQLS  527 (707)
Q Consensus       468 -----------~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg--------~~~~V~Iwdl~  527 (707)
                                 --.....+++++|.+......... -....-..+.|++.|++|++-....        +...+.|+++.
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~  263 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT  263 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence                       111234455666665533222111 1122235688999999876543211        23478888888


Q ss_pred             CCceeeeeeccCCCeEEEEEeCCCCEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---
Q 005235          528 KKLSHRIPFKLHGLPVSSVFHPTRSIFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---  601 (707)
Q Consensus       528 ~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---  601 (707)
                      ..... ......++|..++|.|.+..|++.+   ...+-++|++.. +...+  ..+.=+.+.|+|.++++++++.|   
T Consensus       264 e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~  339 (561)
T COG5354         264 ERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQ  339 (561)
T ss_pred             ccccc-eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccc
Confidence            55443 2326689999999999998887755   688999999866 44333  33455778899999999998776   


Q ss_pred             CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235          602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS------DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS  675 (707)
Q Consensus       602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs------~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~  675 (707)
                      |.+-+||......+...+.+-  ..+-+.|+|++.++.+..      .|..|.|||+.      ....      +     
T Consensus       340 gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~------g~~~------f-----  400 (561)
T COG5354         340 GNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY------GAKV------F-----  400 (561)
T ss_pred             cceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEec------Cchh------h-----
Confidence            569999987553444345443  345578999999877664      47889999653      1111      0     


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          676 SNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       676 ~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                          +.+.+.|.|.+++.-+.+.+.
T Consensus       401 ----el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         401 ----ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ----hhhhccccCCcccceeeccCC
Confidence                156677888777766665544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.18  E-value=2.8e-08  Score=119.37  Aligned_cols=306  Identities=11%  Similarity=0.096  Sum_probs=181.0

Q ss_pred             cEEEEEeCCCcEEEE----eCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh-------ccc
Q 005235          389 YLEYKGSTDGTVRIW----EVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE-------QRR  457 (707)
Q Consensus       389 ~~l~sgs~DgtVrIW----d~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~-------~~~  457 (707)
                      ..++.+..+|.|.+.    +..+...-..-.....|.|++||||++ .++.++.+++|.+..- ..+...       ...
T Consensus        88 ~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~  165 (928)
T PF04762_consen   88 ESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFG  165 (928)
T ss_pred             CcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEec-cceEEEEeecCccccC
Confidence            456666788889888    555544332223378999999999995 5666667788877652 221110       011


Q ss_pred             ccceeeeccc----ccccCCCCcEE--EEecCCc--cceEEeccCCCeEEEEEcCCCCEEEEEeCC---CCccEEEEEEC
Q 005235          458 VKDLLHVETP----TAPDDNMASIV--SWLQHDK--LDGIRLRHFKMVSSVEWHRRGDYLSTVMPA---GESRAIFMHQL  526 (707)
Q Consensus       458 ~~~v~~~~~~----~~~~~~d~~i~--iW~~~~~--~~~~~~~h~~~V~~v~~sp~g~~lat~s~d---g~~~~V~Iwdl  526 (707)
                      .....+++|+    ..-|+......  .-+..-.  ..+.+. +...-..|+|-.||.|||+.+.+   +..+.++||+-
T Consensus       166 ~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R  244 (928)
T PF04762_consen  166 ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR  244 (928)
T ss_pred             CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC
Confidence            1233444443    11111111000  0000000  011122 45567789999999999998862   22589999997


Q ss_pred             CCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe----CCeEEEEECCCCeEEEEEe----CCCCCeEEEEEcCCCCEEEE
Q 005235          527 SKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST----KKNIRVYDLLKQRLIKKLE----TGLKEVSSIAIHPAGDNLIV  597 (707)
Q Consensus       527 ~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s----dg~I~iwDl~~~~~~~~l~----~~~~~I~sl~~spdg~~L~s  597 (707)
                      . +..+ ..- ...+--.+++|.|.|.+|++..    ...|.+|.- +|-.-..|.    .....|..|.|++++..||+
T Consensus       245 e-G~L~-stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv  321 (928)
T PF04762_consen  245 E-GELQ-STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAV  321 (928)
T ss_pred             C-ceEE-eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEE
Confidence            6 4443 333 4555667899999999999875    255777763 332222222    34456999999999999999


Q ss_pred             EECCCcEEEEECCCCC-cceEEeecC-CCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCC---------------
Q 005235          598 GSREGKLCWFDMDLSS-KPYRVLKCH-PKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLN---------------  659 (707)
Q Consensus       598 Gs~Dg~I~vwDl~~~~-~~~~~l~~h-~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~---------------  659 (707)
                      ...|. |.+|-..+.. -+.+.+... ...+..+.|||..+ .|...+.+|.+..++..-..+..               
T Consensus       322 ~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVID  400 (928)
T PF04762_consen  322 WLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVID  400 (928)
T ss_pred             EecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEe
Confidence            87665 9999886541 112233322 23455699999655 46666665666555432100000               


Q ss_pred             ----------CCCcccce--EEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          660 ----------QNPLIVPL--EILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       660 ----------~~~~~~pl--~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                                ......|+  ..+.-. .    .|.+++|++++..+++...||+|.+|.
T Consensus       401 G~~lllTpf~~a~VPPPMs~~~l~~~-~----~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  401 GNKLLLTPFRRAVVPPPMSSYELELP-S----PVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             CCeEEEecccccCCCchHhceEEcCC-C----CcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                      00000111  122222 2    299999999998899999999999986

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.10  E-value=4.2e-07  Score=97.19  Aligned_cols=259  Identities=14%  Similarity=0.054  Sum_probs=154.6

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE---------eCCeEEEEECCCCCchhcccccceeeecccc
Q 005235          398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS---------VGQDVLILNTGLGNEEEQRRVKDLLHVETPT  468 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s---------~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~  468 (707)
                      ++|.|.|..+++.+.++.....-..+ ++||+...+++.+         .++.|.+||+.+....-              
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~--------------   91 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA--------------   91 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe--------------
Confidence            89999999999999999985555555 9999953334444         36788888877653310              


Q ss_pred             cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEe
Q 005235          469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFH  548 (707)
Q Consensus       469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fs  548 (707)
                                -..+....   ..........++++|+|++|++...+. ...|.+.|+.+++.. ..+...+...-+..+
T Consensus        92 ----------~i~~p~~p---~~~~~~~~~~~~ls~dgk~l~V~n~~p-~~~V~VvD~~~~kvv-~ei~vp~~~~vy~t~  156 (352)
T TIGR02658        92 ----------DIELPEGP---RFLVGTYPWMTSLTPDNKTLLFYQFSP-SPAVGVVDLEGKAFV-RMMDVPDCYHIFPTA  156 (352)
T ss_pred             ----------EEccCCCc---hhhccCccceEEECCCCCEEEEecCCC-CCEEEEEECCCCcEE-EEEeCCCCcEEEEec
Confidence                      00000000   000122345789999999998776442 349999999999887 555333322222222


Q ss_pred             CCCCEEEEEeCCeEEEEECCC-CeEE-EE---EeCC-----CCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCC----
Q 005235          549 PTRSIFFVSTKKNIRVYDLLK-QRLI-KK---LETG-----LKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSS----  613 (707)
Q Consensus       549 pd~~~l~v~sdg~I~iwDl~~-~~~~-~~---l~~~-----~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~----  613 (707)
                       ...+++.+.||......+.+ ++.. ..   +...     ..+    .|.+ +|.++.+... |.|++.|+....    
T Consensus       157 -e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~  230 (352)
T TIGR02658       157 -NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL  230 (352)
T ss_pred             -CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceec
Confidence             23333334455554444432 2211 11   1110     112    3455 7877777666 999999964321    


Q ss_pred             cceEEeec-------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccCCCCCCcccceEEee-CCCC
Q 005235          614 KPYRVLKC-------HPKDITNVAFHRSYPLFASCSD----------DCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTS  675 (707)
Q Consensus       614 ~~~~~l~~-------h~~~I~~vafspdg~llaSgs~----------Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~  675 (707)
                      .++..+..       ..+.+.-++++|++..++.+..          .+.|.++      |..+...   +..+. |+. 
T Consensus       231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi------D~~t~kv---i~~i~vG~~-  300 (352)
T TIGR02658       231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV------DAKTGKR---LRKIELGHE-  300 (352)
T ss_pred             ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE------ECCCCeE---EEEEeCCCc-
Confidence            23333321       1233445999999987766431          2468888      4444443   44443 332 


Q ss_pred             CCCCCeeEEEEcCCCC-EEEEEe-CCCcEEEEeC
Q 005235          676 SNGRGVMDCKFHPRQP-WLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       676 ~~~~gV~~l~fspdg~-~L~s~g-~Dg~IrlWdl  707 (707)
                           +..++++||++ +|++.. .++.|.+.|.
T Consensus       301 -----~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       301 -----IDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             -----eeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence                 89999999999 887665 6788998874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.10  E-value=4.1e-07  Score=94.12  Aligned_cols=254  Identities=17%  Similarity=0.177  Sum_probs=161.5

Q ss_pred             CCCCCCCCcccCCCCcEEEEEe---CCCcEEEEeCCC--CeEEEEEec---CCcEEEEEEccCCCccEEEEE-eCCeEEE
Q 005235          374 KLPSRKDLKPYPVACYLEYKGS---TDGTVRIWEVES--GRCLRVLEI---GEAIQYVAWNPLPELPVLAVS-VGQDVLI  444 (707)
Q Consensus       374 ~lp~~~~l~pfp~~~~~l~sgs---~DgtVrIWd~~t--g~~l~~l~~---~~~V~~v~~spdg~~~lla~s-~d~~V~l  444 (707)
                      .+.+|..|. +..+...||++.   .+|.|--|.+..  |+....-+.   ..+.+.|+++++|. .++++. ..+.|.+
T Consensus        38 ~~~nptyl~-~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v  115 (346)
T COG2706          38 ELGNPTYLA-VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSV  115 (346)
T ss_pred             ccCCCceEE-ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCC-EEEEEEccCceEEE
Confidence            344444443 344455677663   357787777664  665332222   45559999999994 455544 5678888


Q ss_pred             EECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235          445 LNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH  524 (707)
Q Consensus       445 wd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw  524 (707)
                      +-+...... ..                   .+.+-.-.+.... ...-..-+.+..+.|+|++|+++...  .-.|.+|
T Consensus       116 ~p~~~dG~l-~~-------------------~v~~~~h~g~~p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG--~Dri~~y  172 (346)
T COG2706         116 YPLQADGSL-QP-------------------VVQVVKHTGSGPH-ERQESPHVHSANFTPDGRYLVVPDLG--TDRIFLY  172 (346)
T ss_pred             EEcccCCcc-cc-------------------ceeeeecCCCCCC-ccccCCccceeeeCCCCCEEEEeecC--CceEEEE
Confidence            887542110 00                   0000000000000 01111227788999999999988753  2389999


Q ss_pred             ECCCCceeee---eeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCC-eEEEEEe---------CCCCCeEEEEEc
Q 005235          525 QLSKKLSHRI---PFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQ-RLIKKLE---------TGLKEVSSIAIH  589 (707)
Q Consensus       525 dl~~~~~~~~---~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~-~~~~~l~---------~~~~~I~sl~~s  589 (707)
                      ++..+.....   .++.......++|||++++..+.+  +++|-+|..... ..+..++         .+..+...|.++
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis  252 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS  252 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence            9997765421   126677889999999999999887  799999998763 2222222         244678899999


Q ss_pred             CCCCEEEEEEC-CCcEEEEECCCCCcceEEe---ecCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEec
Q 005235          590 PAGDNLIVGSR-EGKLCWFDMDLSSKPYRVL---KCHPKDITNVAFHRSYPLFASCSDD-CTAYVFHG  652 (707)
Q Consensus       590 pdg~~L~sGs~-Dg~I~vwDl~~~~~~~~~l---~~h~~~I~~vafspdg~llaSgs~D-g~I~Vwd~  652 (707)
                      |+|++|.++.. ...|.+|.++..+..+..+   ..+...-+...|++.+++|+++..+ .+|.||..
T Consensus       253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence            99999987643 2368889887654333332   2344446889999999988888865 47899854

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.10  E-value=5.8e-09  Score=113.16  Aligned_cols=183  Identities=16%  Similarity=0.209  Sum_probs=148.7

Q ss_pred             CCCCEEEEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEe------C--------------CCCEEEEEe-
Q 005235          504 RRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFH------P--------------TRSIFFVST-  558 (707)
Q Consensus       504 p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fs------p--------------d~~~l~v~s-  558 (707)
                      |.+.|||....||   .++||+..+++.+ ..|    ...+..++..|.      |              +...++-|+ 
T Consensus         3 ~~~~~~A~~~~~g---~l~iw~t~~~~~~-~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    3 PALDYFALSTGDG---RLRIWDTAKNQLQ-QEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP   78 (541)
T ss_pred             chhheEeecCCCC---eEEEEEccCceee-eeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence            4578999999888   9999999999887 666    334555555553      2              122455566 


Q ss_pred             CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC
Q 005235          559 KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP  636 (707)
Q Consensus       559 dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~  636 (707)
                      .|.|.+|++..++...++.  .|.+.|.++.++.+-..|.+++.|+.+..|+.... +.+..+......+.+++++|||.
T Consensus        79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCCCC
Confidence            8999999999999998887  47788999999999999999999999999999876 77888888889999999999999


Q ss_pred             EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC-----CCEE-EEEeCCCcEEEEe
Q 005235          637 LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR-----QPWL-FTAGADSVIRLYC  706 (707)
Q Consensus       637 llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd-----g~~L-~s~g~Dg~IrlWd  706 (707)
                      .+++||  ++|++|      ++.+...   +..|.||.+.    |.+++|--.     |.++ .++..+.-|.+|-
T Consensus       158 ~l~~as--~~ik~~------~~~~kev---v~~ftgh~s~----v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  158 ILLTAS--RQIKVL------DIETKEV---VITFTGHGSP----VRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             EEEecc--ceEEEE------EccCceE---EEEecCCCcc----eEEEEEEEeccccccceeeeccccccceeEEE
Confidence            999887  689999      5556555   8899999998    999999876     5554 4455566677763

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=2e-08  Score=107.86  Aligned_cols=250  Identities=12%  Similarity=0.156  Sum_probs=160.2

Q ss_pred             CcEEEEeCCCCeEEEEEec---CCcE-EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235          398 GTVRIWEVESGRCLRVLEI---GEAI-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN  473 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~---~~~V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~  473 (707)
                      ..++|||+.||...+.|..   ...+ .-..||.|+  .++|.-..+.|.|++......                     
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd--Ky~Arm~~~sisIyEtpsf~l---------------------  338 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD--KYFARMTGNSISIYETPSFML---------------------  338 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCC--ceeEEeccceEEEEecCceee---------------------
Confidence            5799999999999988877   2222 345799998  577777778899998654211                     


Q ss_pred             CCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC--CccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC
Q 005235          474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG--ESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT  550 (707)
Q Consensus       474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg--~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd  550 (707)
                            .+.       ..-.-..|....|+|.++.||.=...-  ....+.+-.+.+.+.. +.- -++-.-..+.|..+
T Consensus       339 ------ld~-------Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i-Rt~nlfnVsDckLhWQk~  404 (698)
T KOG2314|consen  339 ------LDK-------KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI-RTKNLFNVSDCKLHWQKS  404 (698)
T ss_pred             ------ecc-------cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee-eeccceeeeccEEEeccC
Confidence                  110       001235678889999999888765432  2346777777777655 333 22222234667778


Q ss_pred             CCEEEEEeC-----------CeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEECCC-CC-
Q 005235          551 RSIFFVSTK-----------KNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSR---EGKLCWFDMDL-SS-  613 (707)
Q Consensus       551 ~~~l~v~sd-----------g~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~---Dg~I~vwDl~~-~~-  613 (707)
                      |.+|++-.|           ..+-|+.++.. -++..+. -...|..++|-|.|+.+++-+.   ..++.+|-+.+ .. 
T Consensus       405 gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~  483 (698)
T KOG2314|consen  405 GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK  483 (698)
T ss_pred             CcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc
Confidence            888887432           23455555443 2233333 2356889999999998876543   35688998874 22 


Q ss_pred             -cceEEeecCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          614 -KPYRVLKCHPKDITNVAFHRSYPLFASCS---DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       614 -~~~~~l~~h~~~I~~vafspdg~llaSgs---~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                       .+++.+.  ....+.|.|+|.|++++.+.   ..|.+.++|...    ....    ......|.     +.+.+.|.|.
T Consensus       484 ~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~----a~~k----~~~~~eh~-----~at~veWDPt  548 (698)
T KOG2314|consen  484 PSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY----ADLK----DTASPEHF-----AATEVEWDPT  548 (698)
T ss_pred             hhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch----hhhh----hccCcccc-----ccccceECCC
Confidence             2334443  35578899999999887654   578899997631    1111    11112333     2788999999


Q ss_pred             CCEEEEEeCCC
Q 005235          690 QPWLFTAGADS  700 (707)
Q Consensus       690 g~~L~s~g~Dg  700 (707)
                      |++++|++.-+
T Consensus       549 GRYvvT~ss~w  559 (698)
T KOG2314|consen  549 GRYVVTSSSSW  559 (698)
T ss_pred             CCEEEEeeehh
Confidence            99999988643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.07  E-value=1.5e-07  Score=103.19  Aligned_cols=286  Identities=14%  Similarity=0.076  Sum_probs=170.4

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEE-EEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc-cceeeec
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQ-YVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV-KDLLHVE  465 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~-~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~-~~v~~~~  465 (707)
                      ...++.++.+|.|.-+|..+|+.+..+.....+. +++.. ++  .+++++.++.|..+|..++........ ..+.+..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p  141 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GG--LVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP  141 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CC--EEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence            3578888999999999999999988877744332 23322 33  688888899999999988765322211 1111100


Q ss_pred             ----ccccccCCCCcEEEEecCCccceEEeccCCCeE------EEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235          466 ----TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS------SVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP  535 (707)
Q Consensus       466 ----~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~------~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~  535 (707)
                          -.+..+..++.+..|+..++...-.........      +....  +..++.+..++   .+..+|+.++... ..
T Consensus       142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g---~v~ald~~tG~~~-W~  215 (377)
T TIGR03300       142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGG---KLVALDLQTGQPL-WE  215 (377)
T ss_pred             EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCC---EEEEEEccCCCEe-ee
Confidence                014455667888888887665433222211111      11111  24666777666   8999998887654 32


Q ss_pred             e--ccC-C--C------e-EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 005235          536 F--KLH-G--L------P-VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG  602 (707)
Q Consensus       536 ~--~~~-~--~------V-~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg  602 (707)
                      .  ... +  .      + .+..++  +..+++++ ++.++.||+.+++.+......  ....+.+  .+.+|++++.+|
T Consensus       216 ~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G  289 (377)
T TIGR03300       216 QRVALPKGRTELERLVDVDGDPVVD--GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADG  289 (377)
T ss_pred             eccccCCCCCchhhhhccCCccEEE--CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eCCEEEEECCCC
Confidence            2  110 0  0      0 111222  34566655 899999999999887766532  1222333  467888899999


Q ss_pred             cEEEEECCCCCcceEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCe
Q 005235          603 KLCWFDMDLSSKPYRVLKC-HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGV  681 (707)
Q Consensus       603 ~I~vwDl~~~~~~~~~l~~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV  681 (707)
                      .|..+|..++. .+-.... ......+...  .+..|++++.+|.|++++.      .++..   +..+..+...   -.
T Consensus       290 ~l~~~d~~tG~-~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~------~tG~~---~~~~~~~~~~---~~  354 (377)
T TIGR03300       290 VVVALDRRSGS-ELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR------EDGSF---VARLKTDGSG---IA  354 (377)
T ss_pred             eEEEEECCCCc-EEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC------CCCCE---EEEEEcCCCc---cc
Confidence            99999998873 3322211 1112222222  3568888999999999953      34443   4445443321   02


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          682 MDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       682 ~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      .+.++..  ..|+.++.||.|..|
T Consensus       355 ~sp~~~~--~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       355 SPPVVVG--DGLLVQTRDGDLYAF  376 (377)
T ss_pred             cCCEEEC--CEEEEEeCCceEEEe
Confidence            2233332  358899999998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=1.9e-07  Score=103.46  Aligned_cols=209  Identities=13%  Similarity=0.090  Sum_probs=132.5

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235          398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM  474 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d  474 (707)
                      ..|.+-|.. |...+.+...+.+....|+|+|+..++.++..   ..|.++|+.++..                      
T Consensus       169 ~~l~~~d~d-g~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~----------------------  225 (419)
T PRK04043        169 SNIVLADYT-LTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK----------------------  225 (419)
T ss_pred             ceEEEECCC-CCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE----------------------
Confidence            345555543 33344444445788999999995324433433   3566666655422                      


Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI  553 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~  553 (707)
                                   ..+....+.+....|+|+|+.++..........|.++++.++..  ..+ ...+......|+|||+.
T Consensus       226 -------------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~--~~LT~~~~~d~~p~~SPDG~~  290 (419)
T PRK04043        226 -------------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL--TQITNYPGIDVNGNFVEDDKR  290 (419)
T ss_pred             -------------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE--EEcccCCCccCccEECCCCCE
Confidence                         22223445566788999999887665444466899999988765  344 44443456689999998


Q ss_pred             EEEEeCC----eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---------CcEEEEECCCCCcceEEee
Q 005235          554 FFVSTKK----NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---------GKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       554 l~v~sdg----~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---------g~I~vwDl~~~~~~~~~l~  620 (707)
                      |+..+++    .|.++|+.+++..+....+. .  ...|||+|+.|+..+..         ..|.+.|+.++ . .+.+.
T Consensus       291 I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-~-~~~LT  365 (419)
T PRK04043        291 IVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD-Y-IRRLT  365 (419)
T ss_pred             EEEEECCCCCceEEEEECCCCCeEeCccCCC-c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC-C-eEECC
Confidence            8777642    78889998876543332221 2  24899999998877654         26888888765 2 44555


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCC-CcEEEE
Q 005235          621 CHPKDITNVAFHRSYPLFASCSDD-CTAYVF  650 (707)
Q Consensus       621 ~h~~~I~~vafspdg~llaSgs~D-g~I~Vw  650 (707)
                      .. .......|+|+|+.|+..+.+ +.-.|+
T Consensus       366 ~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~  395 (419)
T PRK04043        366 AN-GVNQFPRFSSDGGSIMFIKYLGNQSALG  395 (419)
T ss_pred             CC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence            43 233468999999977766543 344444

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.03  E-value=1.7e-09  Score=128.62  Aligned_cols=245  Identities=17%  Similarity=0.200  Sum_probs=166.1

Q ss_pred             eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235          395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM  474 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d  474 (707)
                      ..++++.-|...-+. +.....-..|.++.=+|.. ...++++.||.|++|....+                        
T Consensus      2187 n~~~~~~tq~~~~~~-~~~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~------------------------ 2240 (2439)
T KOG1064|consen 2187 NLPWLGSTQTSRGAS-VMIKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHG------------------------ 2240 (2439)
T ss_pred             cCCccccceecccce-eEeecccCceeeecCCCCC-ceEEecCCCceEEEEeccCC------------------------
Confidence            445555555533222 2222235678888888887 47899999999999986543                        


Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI  553 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~  553 (707)
                      .+|..|+.        .+ ...|+.+.|+..|+.+..+..||   .+.+|+.+....  ... .|......+.|-.  ..
T Consensus      2241 ~~v~~~rt--------~g-~s~vtr~~f~~qGnk~~i~d~dg---~l~l~q~~pk~~--~s~qchnk~~~Df~Fi~--s~ 2304 (2439)
T KOG1064|consen 2241 QQVVCFRT--------AG-NSRVTRSRFNHQGNKFGIVDGDG---DLSLWQASPKPY--TSWQCHNKALSDFRFIG--SL 2304 (2439)
T ss_pred             CeEEEeec--------cC-cchhhhhhhcccCCceeeeccCC---ceeecccCCcce--eccccCCccccceeeee--hh
Confidence            24455532        23 37889999999999999999888   999999983211  222 6667777788875  55


Q ss_pred             EEEEe----CCeEEEEECCC---CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCE
Q 005235          554 FFVST----KKNIRVYDLLK---QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI  626 (707)
Q Consensus       554 l~v~s----dg~I~iwDl~~---~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I  626 (707)
                      +++++    ++.+.+||.-.   ..++.  .+|.+.++++++-|....|++|+.+|.|++||++.. ++.++++.     
T Consensus      2305 ~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~----- 2376 (2439)
T KOG1064|consen 2305 LATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA----- 2376 (2439)
T ss_pred             hhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh-----
Confidence            66553    58999999653   23444  789899999999999999999999999999999854 55544442     


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235          627 TNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV  701 (707)
Q Consensus       627 ~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~  701 (707)
                          ++ ...+|++|+..|.|+||++..++-+.+.+....-.-+--+.     | ..+ +--....|++||+||+
T Consensus      2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~-----g-~Q~-~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNI-----G-MQI-NVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             ----hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhc-----C-cee-eeccCceEEEecCCCC
Confidence                44 45689999999999999776655444444322111110010     0 111 2223457899999985

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.03  E-value=1.3e-07  Score=99.97  Aligned_cols=171  Identities=16%  Similarity=0.215  Sum_probs=130.3

Q ss_pred             CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CC-eEEEEECCCCeEEEEEeCCCCC
Q 005235          505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KK-NIRVYDLLKQRLIKKLETGLKE  582 (707)
Q Consensus       505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg-~I~iwDl~~~~~~~~l~~~~~~  582 (707)
                      +|++++.+|..    ...|.+...+-.  .++++.+.|.-..+..++.-++.|+ || .+-|||..+++ ++.+...-+.
T Consensus       331 ~Gd~ia~VSRG----kaFi~~~~~~~~--iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~  403 (668)
T COG4946         331 NGDYIALVSRG----KAFIMRPWDGYS--IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGN  403 (668)
T ss_pred             CCcEEEEEecC----cEEEECCCCCee--EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccc
Confidence            78999999963    677777665544  4557778899888988888888888 76 89999998775 4566677789


Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEecccccCC
Q 005235          583 VSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC----TAYVFHGMVYSDL  658 (707)
Q Consensus       583 I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg----~I~Vwd~~~~~Dl  658 (707)
                      |.++..+|+|.+++++.....|.+.|++++ .+...-+...+-|+.++|||++++||-+--+|    .|+++|+.     
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididng-nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~-----  477 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNG-NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD-----  477 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCC-CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-----
Confidence            999999999999999999999999999988 44333344567899999999999999887776    68999643     


Q ss_pred             CCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235          659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g  697 (707)
                       .... ..+.+-.+|       =.+.+|.|++++|..-+
T Consensus       478 -~~Ki-y~vTT~ta~-------DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         478 -GGKI-YDVTTPTAY-------DFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             -CCeE-EEecCCccc-------ccCcccCCCCcEEEEEe
Confidence             3221 112222233       45578999999886554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.01  E-value=3.6e-09  Score=125.92  Aligned_cols=188  Identities=17%  Similarity=0.215  Sum_probs=151.0

Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYD  566 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD  566 (707)
                      ...+-..|.++.-||...+.+||+.||   .|++|....++.. ..+  .....|+.+.|+.+|.-+.++. ||.+.+|.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dg---sv~~~~w~~~~~v-~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDG---SVRMFEWGHGQQV-VCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCc---eEEEEeccCCCeE-EEeeccCcchhhhhhhcccCCceeeeccCCceeecc
Confidence            445667889999999999999999999   9999999988877 666  5558999999999998888876 99999999


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE---ECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC
Q 005235          567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG---SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG---s~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~  643 (707)
                      +. .++....++|....+.+.|-.  ..++++   +.++.+.+||.-........-..|.+.++++++.|..++|+|||.
T Consensus      2280 ~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             cC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence            87 667777888988888888863  566664   346789999976543333334889999999999999999999999


Q ss_pred             CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          644 DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +|.|+|||+      .+..+       + |.-.    .    ++ ...++++|++.|.|+||++
T Consensus      2357 ~G~v~l~D~------rqrql-------~-h~~~----~----~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2357 KGEVCLFDI------RQRQL-------R-HTFQ----A----LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             cCcEEEeeh------HHHHH-------H-HHhh----h----hh-hhheeeccCcccceEEEEc
Confidence            999999954      34333       1 3221    2    55 6679999999999999985

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.00  E-value=3.4e-09  Score=116.66  Aligned_cols=285  Identities=14%  Similarity=0.140  Sum_probs=187.5

Q ss_pred             EEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhccccc--ceeeeccc-------ccccCCCCcEEEEe
Q 005235          413 VLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVK--DLLHVETP-------TAPDDNMASIVSWL  481 (707)
Q Consensus       413 ~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~--~v~~~~~~-------~~~~~~d~~i~iW~  481 (707)
                      .+...+++.++..+|.|. -++.++.-| +.+.|+.....  ....|..  .+-...++       .++..+.....+|+
T Consensus        20 sl~v~~~~~a~si~p~gr-di~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn   97 (1081)
T KOG0309|consen   20 SLKVDGGFNAVSINPSGR-DIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN   97 (1081)
T ss_pred             EEEecCcccceeeccccc-hhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence            455678899999999994 455555444 45555544311  1111111  11111121       22233444556777


Q ss_pred             cCCccc----eEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEE
Q 005235          482 QHDKLD----GIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFF  555 (707)
Q Consensus       482 ~~~~~~----~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~  555 (707)
                      +.....    ..+.+|...|+.+.|++.. ..+++++.|.   .|..||++........+ .-......|+|+-..+.+.
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt---~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT---YVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL  174 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccc---cceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence            653221    2366899999999999865 5788999887   99999998876542333 4455667889987666655


Q ss_pred             EEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEc
Q 005235          556 VST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFH  632 (707)
Q Consensus       556 v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafs  632 (707)
                      +.+ .+.|++||++.| .++..+++|...|++++|..- ...+.+.+.||+|+.||.+.+.+..+....-..+|+.-.|-
T Consensus       175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~  254 (1081)
T KOG0309|consen  175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL  254 (1081)
T ss_pred             hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence            555 889999999986 677888998888899888642 35688899999999999987655445455556788888888


Q ss_pred             CCCCEEEEE--eCCCcEEEEecccccCCC--CCCcccceEEeeCCCCCCCCCeeEEEEcCCCC----------EEEEEeC
Q 005235          633 RSYPLFASC--SDDCTAYVFHGMVYSDLN--QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP----------WLFTAGA  698 (707)
Q Consensus       633 pdg~llaSg--s~Dg~I~Vwd~~~~~Dl~--~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~----------~L~s~g~  698 (707)
                      |-|.-.+.-  -.+..|.+++.... |+.  ......|+.++.||...    |....|-..+.          .|+|-+.
T Consensus       255 Pfg~g~~~mp~~G~n~v~~~~c~n~-d~e~n~~~~~~pVh~F~GH~D~----V~eFlWR~r~e~~~d~d~rdfQLVTWSk  329 (1081)
T KOG0309|consen  255 PFGEGYCIMPMVGGNMVPQLRCENS-DLEWNVFDLNTPVHTFVGHDDV----VLEFLWRKRKECDGDYDSRDFQLVTWSK  329 (1081)
T ss_pred             ccCceeEeccccCCeeeeeccccch-hhhhccccCCcceeeecCcchH----HHHHhhhhcccccCCCCccceeEEEeec
Confidence            866522211  11224555433311 121  11234579999999998    88877754332          6999999


Q ss_pred             CCcEEEEeC
Q 005235          699 DSVIRLYCH  707 (707)
Q Consensus       699 Dg~IrlWdl  707 (707)
                      |.++|+|-+
T Consensus       330 D~~lrlWpI  338 (1081)
T KOG0309|consen  330 DQTLRLWPI  338 (1081)
T ss_pred             CCceEeeec
Confidence            999999954

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.00  E-value=8.1e-08  Score=96.24  Aligned_cols=197  Identities=16%  Similarity=0.172  Sum_probs=134.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECC-CC
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLL-KQ  570 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~-~~  570 (707)
                      ...++.|++.|..+++.-.+|   .+.+-+........ ... .|.-.+..+.|+...+ ++++|+ |+.+..||++ .+
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G---~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~  199 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRG---SISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK  199 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCC---cEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence            356788999999888888877   66655544444431 234 7788888889987554 666777 8999999999 34


Q ss_pred             eEEEE-EeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCC--CCEEEEEeCCCc
Q 005235          571 RLIKK-LETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCT  646 (707)
Q Consensus       571 ~~~~~-l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd--g~llaSgs~Dg~  646 (707)
                      +.+.. .+.|...|.||.-+| .+.+|++|++|-.|++||.+.-.+|+..-. -.+.|+.+.++|.  +.+|++|-..| 
T Consensus       200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-  277 (339)
T KOG0280|consen  200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-  277 (339)
T ss_pred             ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-
Confidence            44443 556778899998876 478999999999999999997667765443 3478999999995  34566665555 


Q ss_pred             EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEE-EE
Q 005235          647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIR-LY  705 (707)
Q Consensus       647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~Ir-lW  705 (707)
                      .+|-+....  ...  ....+...+.|.+-    +..-.|......|+|++ .|..|+ +|
T Consensus       278 ~ki~~~~~~--~~e--~~~~~~s~~~hdSl----~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  278 AKILDSSDK--VLE--FQIVLPSDKIHDSL----CYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             ceEEEeccc--ccc--hheeeeccccccce----eeccccccccceeeeeeccccceeeee
Confidence            566644311  111  11123445566554    66667755556788875 577755 77

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=1.9e-07  Score=103.55  Aligned_cols=183  Identities=11%  Similarity=0.087  Sum_probs=120.1

Q ss_pred             CCeEEEEEcCCCCE-EEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe----CCeEEEEECCC
Q 005235          495 KMVSSVEWHRRGDY-LSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST----KKNIRVYDLLK  569 (707)
Q Consensus       495 ~~V~~v~~sp~g~~-lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s----dg~I~iwDl~~  569 (707)
                      +.+....|+|+|+. ++..+..+....|.++|+.++... ......+......|+|||..|+...    +..|.++|+.+
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            37788999999985 666666543568999999888664 2225566677889999998877643    36799999987


Q ss_pred             CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C--cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC--
Q 005235          570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-G--KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD--  644 (707)
Q Consensus       570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g--~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D--  644 (707)
                      +.. ..+..+........|+|||+.|+..+.. +  .|++.|+.++ .. +.+.....  ....|||+|..|+..+..  
T Consensus       267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~~-~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~  341 (419)
T PRK04043        267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-SV-EQVVFHGK--NNSSVSTYKNYIVYSSRETN  341 (419)
T ss_pred             CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC-Ce-EeCccCCC--cCceECCCCCEEEEEEcCCC
Confidence            764 3454443334566899999988877643 3  5888888765 32 22322221  235899999988766543  


Q ss_pred             -----C--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          645 -----C--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       645 -----g--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                           +  .|.+.      ++.++.    ...|.... .    .....|+|||+.|+..+.
T Consensus       342 ~~~~~~~~~I~v~------d~~~g~----~~~LT~~~-~----~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        342 NEFGKNTFNLYLI------STNSDY----IRRLTANG-V----NQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             cccCCCCcEEEEE------ECCCCC----eEECCCCC-C----cCCeEECCCCCEEEEEEc
Confidence                 2  45555      333332    23343332 1    345889999998866553

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.96  E-value=1.3e-08  Score=116.54  Aligned_cols=185  Identities=13%  Similarity=0.081  Sum_probs=144.4

Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcE-----EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          385 PVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAI-----QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       385 p~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V-----~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      -.....++.+..+..+-|||...+..+..+.+.+..     .-+-++++. .++++++.-+.|.+|.+....        
T Consensus        96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn--------  166 (967)
T KOG0974|consen   96 FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDN--------  166 (967)
T ss_pred             hhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccC--------
Confidence            334457888888999999999988887777663322     122234444 467777778888888865210        


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eeecc
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPFKL  538 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~~~  538 (707)
                                                ....+.+|.+.|..+.|+-+|.++++++.|.   ++++|.+.+..... .-|+|
T Consensus       167 --------------------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR---siRlW~i~s~~~~~~~~fgH  217 (967)
T KOG0974|consen  167 --------------------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDR---SIRLWPIDSREVLGCTGFGH  217 (967)
T ss_pred             --------------------------CcceecccCCceEEEEEccCCcEEEEEecCc---ceeeeecccccccCcccccc
Confidence                                      0113669999999999999999999999987   99999999988773 23499


Q ss_pred             CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235          539 HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-KEVSSIAIHPAGDNLIVGSREGKLCWFDMD  610 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~  610 (707)
                      .+.|..++|+|+  .+++++ |.+.++|+.. +..+..+..|. +.|..++.+++...+++++.|+.+++||+.
T Consensus       218 saRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  218 SARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             cceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            999999999999  777777 9999999765 44455777665 459999999999999999999999999985

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.96  E-value=6.4e-07  Score=109.74  Aligned_cols=240  Identities=11%  Similarity=0.067  Sum_probs=149.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEecC---------------CcEEEEEEccCCCccEEEEE-eCCeEEEEECCCC
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIG---------------EAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLG  450 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~---------------~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~  450 (707)
                      ++.++++-+..+.|++||.. |..+..+...               .....|++.++++ .|+++. .++.|+++++.++
T Consensus       579 ~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-~LYVaDt~n~~Ir~id~~~~  656 (1057)
T PLN02919        579 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-LLYVADTENHALREIDFVNE  656 (1057)
T ss_pred             CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-EEEEEeCCCceEEEEecCCC
Confidence            45567777788899999975 5555444331               1357889998874 344443 4567888887654


Q ss_pred             CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCC
Q 005235          451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKK  529 (707)
Q Consensus       451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~  529 (707)
                      ........             +..+    .+..++.... ...-.....|+|++ +|..+++.+.++   .|++|+...+
T Consensus       657 ~V~tlag~-------------G~~g----~~~~gg~~~~-~~~ln~P~gVa~dp~~g~LyVad~~~~---~I~v~d~~~g  715 (1057)
T PLN02919        657 TVRTLAGN-------------GTKG----SDYQGGKKGT-SQVLNSPWDVCFEPVNEKVYIAMAGQH---QIWEYNISDG  715 (1057)
T ss_pred             EEEEEecc-------------Cccc----CCCCCChhhh-HhhcCCCeEEEEecCCCeEEEEECCCC---eEEEEECCCC
Confidence            21100000             0000    0000000000 00012346899999 455556555555   8999998776


Q ss_pred             ceeeeee-c---------------cCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeC-------------
Q 005235          530 LSHRIPF-K---------------LHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLET-------------  578 (707)
Q Consensus       530 ~~~~~~~-~---------------~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~-------------  578 (707)
                      ...  .+ +               .-.....++|+|++..|+++.  ++.|++||+.++.......+             
T Consensus       716 ~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~  793 (1057)
T PLN02919        716 VTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD  793 (1057)
T ss_pred             eEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence            542  22 1               112456799999999777765  68999999987653211100             


Q ss_pred             C--------CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--------------CCCEEEEEEcCCCC
Q 005235          579 G--------LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--------------PKDITNVAFHRSYP  636 (707)
Q Consensus       579 ~--------~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--------------~~~I~~vafspdg~  636 (707)
                      +        -....+++++++|..+++.+.+++|++||..++ .. .++.+.              -.....|+++++|+
T Consensus       794 ~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg-~v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~  871 (1057)
T PLN02919        794 HDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK-RV-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR  871 (1057)
T ss_pred             CCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC-eE-EEEeccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence            0        012468999999999899999999999999765 32 223221              12467899999999


Q ss_pred             EEEEEeCCCcEEEEecc
Q 005235          637 LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       637 llaSgs~Dg~I~Vwd~~  653 (707)
                      ++++.+.++.|++|+..
T Consensus       872 lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        872 LFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             EEEEECCCCEEEEEECC
Confidence            99999999999999764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.94  E-value=6.9e-07  Score=109.44  Aligned_cols=198  Identities=11%  Similarity=0.132  Sum_probs=129.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc-----------------CCCeEEEEEeCCCCEEEE
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL-----------------HGLPVSSVFHPTRSIFFV  556 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~-----------------~~~V~~v~fspd~~~l~v  556 (707)
                      .....|++.++++.|+++...  ++.|+++|+.++..  .++ +.                 -.....++|+|++..+++
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~--n~~Ir~id~~~~~V--~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyV  699 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTE--NHALREIDFVNETV--RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYI  699 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCC--CceEEEEecCCCEE--EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEE
Confidence            346789999998877666543  24899999877653  233 10                 123468999996555555


Q ss_pred             Ee--CCeEEEEECCCCeEEEEEeCC---------------CCCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCCcceEE
Q 005235          557 ST--KKNIRVYDLLKQRLIKKLETG---------------LKEVSSIAIHPAGDNL-IVGSREGKLCWFDMDLSSKPYRV  618 (707)
Q Consensus       557 ~s--dg~I~iwDl~~~~~~~~l~~~---------------~~~I~sl~~spdg~~L-~sGs~Dg~I~vwDl~~~~~~~~~  618 (707)
                      +.  ++.|++||..++... .+.+.               -.....|+++|+|..| ++.+.+++|++||+.++......
T Consensus       700 ad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        700 AMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             EECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence            43  789999999877543 22211               1235679999999855 55566789999999865321100


Q ss_pred             ------------eecC--------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCC--
Q 005235          619 ------------LKCH--------PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS--  676 (707)
Q Consensus       619 ------------l~~h--------~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~--  676 (707)
                                  +..+        -..-.+++|+++|.++++-+.++.|++|+..      ++.    +..+.+....  
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~------tg~----v~tiaG~G~~G~  848 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA------TKR----VTTLAGTGKAGF  848 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC------CCe----EEEEeccCCcCC
Confidence                        0000        0123588999999999999999999999643      221    1222221100  


Q ss_pred             --------CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          677 --------NGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       677 --------~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                              .-.....++++++|.++++-+.+++|++|++
T Consensus       849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence                    0012678999999999899999999999985

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.92  E-value=1.2e-08  Score=100.51  Aligned_cols=255  Identities=16%  Similarity=0.229  Sum_probs=148.4

Q ss_pred             EEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCc--cceEEeccCCCe
Q 005235          420 IQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDK--LDGIRLRHFKMV  497 (707)
Q Consensus       420 V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~--~~~~~~~h~~~V  497 (707)
                      |..+.++.+-  .|+++..++.+..+....+..                        +..|+...+  ....+..|..+-
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~------------------------~~~~~rt~~i~~~~~~a~~sep~   92 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRC------------------------ISLWERDDGIDPFKVLAKNSEID   92 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEE------------------------echhhcccCcCceeeeeccCCCC
Confidence            6667777665  577777777666555433211                        111222111  111233455544


Q ss_pred             EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEE------eCCeEEEEECCC
Q 005235          498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVS------TKKNIRVYDLLK  569 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~------sdg~I~iwDl~~  569 (707)
                      .+-+.+--++.++++..||   .+.+.+.+........+  .+.+. .+.+.-..+.++.++      ..+..++|+++.
T Consensus        93 p~~~~s~~~t~V~~~~~dg---~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p  168 (319)
T KOG4714|consen   93 PNDACTMTDNRVCIGYADG---SLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDP  168 (319)
T ss_pred             CcccccccCCceEecCCCc---eEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccc
Confidence            4444555677899999988   89998876522110111  11111 111222234444443      245667777765


Q ss_pred             CeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcE
Q 005235          570 QRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTA  647 (707)
Q Consensus       570 ~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I  647 (707)
                      .+.+..-......|++++-||..+ .+++|+.||.+.+||++....|...+..|..+|+.|-|||..+ .|++|+.||.+
T Consensus       169 ~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl  248 (319)
T KOG4714|consen  169 IKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL  248 (319)
T ss_pred             cccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence            433221111223499999999764 5677899999999999988788888999999999999999654 89999999999


Q ss_pred             EEEeccc-ccCCCCCCc-------ccceE---EeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          648 YVFHGMV-YSDLNQNPL-------IVPLE---ILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       648 ~Vwd~~~-~~Dl~~~~~-------~~pl~---~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .-||... +-.+..+..       ..|++   .+.+-.......|++  |.-.|+.|++|+.-+.|++++
T Consensus       249 w~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  249 WHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence            9997651 000000000       00111   111111111122444  444688999999999998875

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=1.5e-07  Score=101.32  Aligned_cols=238  Identities=16%  Similarity=0.177  Sum_probs=147.9

Q ss_pred             cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235          419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS  498 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~  498 (707)
                      .-+-+.|||-|  ..++.-.-..|.+|--....                                   .+....|. .|.
T Consensus       212 Tetyv~wSP~G--TYL~t~Hk~GI~lWGG~~f~-----------------------------------r~~RF~Hp-~Vq  253 (698)
T KOG2314|consen  212 TETYVRWSPKG--TYLVTFHKQGIALWGGESFD-----------------------------------RIQRFYHP-GVQ  253 (698)
T ss_pred             eeeeEEecCCc--eEEEEEeccceeeecCccHH-----------------------------------HHHhccCC-Cce
Confidence            34678999999  46666566667777522211                                   11122444 478


Q ss_pred             EEEEcCCCCEEEEEeCCC--------CccEEEEEECCCCceeeeee-c--cCCCe-EEEEEeCCCCEEEEEeCCeEEEEE
Q 005235          499 SVEWHRRGDYLSTVMPAG--------ESRAIFMHQLSKKLSHRIPF-K--LHGLP-VSSVFHPTRSIFFVSTKKNIRVYD  566 (707)
Q Consensus       499 ~v~~sp~g~~lat~s~dg--------~~~~V~Iwdl~~~~~~~~~~-~--~~~~V-~~v~fspd~~~l~v~sdg~I~iwD  566 (707)
                      -+.|||+.+||+|-+..-        ....++|||+.++... ..| .  ....+ .-+.||.|++++|.-+..+|.||+
T Consensus       254 ~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk-rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyE  332 (698)
T KOG2314|consen  254 FIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK-RSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYE  332 (698)
T ss_pred             eeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh-cceeccCCCccccceEEeccCCceeEEeccceEEEEe
Confidence            899999999999987543        3469999999999888 777 2  22222 246799999999988888899998


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC----------------------------------------------
Q 005235          567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR----------------------------------------------  600 (707)
Q Consensus       567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~----------------------------------------------  600 (707)
                      ..+-.++-.-......|..+.|+|.+..||-=+.                                              
T Consensus       333 tpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv  412 (698)
T KOG2314|consen  333 TPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV  412 (698)
T ss_pred             cCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence            7654333221112234555556665544442111                                              


Q ss_pred             -----------CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccCCCCCCcccc
Q 005235          601 -----------EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD---CTAYVFHGMVYSDLNQNPLIVP  666 (707)
Q Consensus       601 -----------Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~~~~~~~p  666 (707)
                                 =-.+-||.++....|+..+. -...|...+|-|.|..|++-+..   .++.+|.+..     .......
T Consensus       413 dR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~-----~~~~~~l  486 (698)
T KOG2314|consen  413 DRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET-----NIKKPSL  486 (698)
T ss_pred             EeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeec-----CCCchhh
Confidence                       00122333333222332222 23567888999999988766533   5789996542     1222223


Q ss_pred             eEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe---CCCcEEEEeC
Q 005235          667 LEILRGHTSSNGRGVMDCKFHPRQPWLFTAG---ADSVIRLYCH  707 (707)
Q Consensus       667 l~~l~gh~~~~~~gV~~l~fspdg~~L~s~g---~Dg~IrlWdl  707 (707)
                      ++.|...  .    .+.+.|+|.|++++.++   ..|.+.++|.
T Consensus       487 Vk~~dk~--~----~N~vfwsPkG~fvvva~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  487 VKELDKK--F----ANTVFWSPKGRFVVVAALVSRRGDLEFYDT  524 (698)
T ss_pred             hhhhccc--c----cceEEEcCCCcEEEEEEecccccceEEEec
Confidence            5555442  2    78899999999997764   4677777763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=2.6e-07  Score=101.71  Aligned_cols=266  Identities=14%  Similarity=0.166  Sum_probs=184.5

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCC-----------------chhcccccceeeeccc-----ccccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN-----------------EEEQRRVKDLLHVETP-----TAPDDNM  474 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~-----------------~~~~~~~~~v~~~~~~-----~~~~~~d  474 (707)
                      .....|++|+... .++++++.+|.+++..+.+..                 ..+.+|...+..+.|.     +.+...+
T Consensus        14 nvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            4567899999877 488899999999999877642                 2455667777766665     6777888


Q ss_pred             CcEEEEecCCccceE---EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCC
Q 005235          475 ASIVSWLQHDKLDGI---RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTR  551 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~---~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~  551 (707)
                      |-|.+|-+-.+....   -....+.|.+++|+.+|..++.+..||   .|.+-.+...+.-...++ ......+.|++|.
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDG---avIVGsvdGNRIwgKeLk-g~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDG---AVIVGSVDGNRIWGKELK-GQLLAHVLWSEDL  168 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccC---CEEEEeeccceecchhcc-hheccceeecccH
Confidence            999999776544332   224567789999999999999999998   888888877644322221 1234478899998


Q ss_pred             CEEEEEe-CCeEEEEECCCC-------eEEEEEeC----CCCCeEEEEEc--------CCCCEEEEEECCCcEEEEECCC
Q 005235          552 SIFFVST-KKNIRVYDLLKQ-------RLIKKLET----GLKEVSSIAIH--------PAGDNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       552 ~~l~v~s-dg~I~iwDl~~~-------~~~~~l~~----~~~~I~sl~~s--------pdg~~L~sGs~Dg~I~vwDl~~  611 (707)
                      ..++.+- .|.+.+||.+..       .+.-...+    ....|..+.|.        |+-..|+++-.+|++.|..-..
T Consensus       169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence            8777665 899999997643       11111111    11225556553        5778899999999999886665


Q ss_pred             CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC---------cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCee
Q 005235          612 SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC---------TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVM  682 (707)
Q Consensus       612 ~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg---------~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~  682 (707)
                      ...|+-.-.  .-.|....|+++|..||.|+.+.         .|++|.          +....+.+|+.....    |+
T Consensus       249 D~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys----------p~G~i~gtlkvpg~~----It  312 (1189)
T KOG2041|consen  249 DPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS----------PYGHIVGTLKVPGSC----IT  312 (1189)
T ss_pred             CCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEec----------cchhheEEEecCCce----ee
Confidence            545554333  36688999999999999998653         344441          222336666666655    99


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEE
Q 005235          683 DCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       683 ~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                      +++|-..|-.++.+- |+.|.+
T Consensus       313 ~lsWEg~gLriA~Av-dsfiyf  333 (1189)
T KOG2041|consen  313 GLSWEGTGLRIAIAV-DSFIYF  333 (1189)
T ss_pred             eeEEcCCceEEEEEe-cceEEE
Confidence            999988776666553 566654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.89  E-value=6e-07  Score=96.06  Aligned_cols=281  Identities=16%  Similarity=0.168  Sum_probs=179.1

Q ss_pred             EEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc------------
Q 005235          401 RIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP------------  467 (707)
Q Consensus       401 rIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~------------  467 (707)
                      .+|.-.+...-..+.. .-++..++|||.|  .+++...-..|.+|.-........-....+....|+            
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G--~~l~~~~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~   92 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLG--TYLFSEHAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSRE   92 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcc--hheehhhccceEEccccchhheeeeecCCceecccCcccceeeeeccC
Confidence            3455544444344442 6788999999999  577777777888998777654443344444444443            


Q ss_pred             --------ccccCCCCcEEEEecCCccceE-EeccCCC--eE-EEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235          468 --------TAPDDNMASIVSWLQHDKLDGI-RLRHFKM--VS-SVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP  535 (707)
Q Consensus       468 --------~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~--V~-~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~  535 (707)
                              +.....+..+.+||..++.... ...-..+  .. -+.|+-+..|+|-...+    .+.||++...-.. .+
T Consensus        93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~----sl~i~e~t~n~~~-~p  167 (561)
T COG5354          93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS----SLYIHEITDNIEE-HP  167 (561)
T ss_pred             CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC----eEEEEecCCcccc-Cc
Confidence                    2223344579999998876644 2222222  33 57888888888766432    8999998444444 67


Q ss_pred             e-ccC-CCeEEEEEeCCC--CEEEEE------eCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE------
Q 005235          536 F-KLH-GLPVSSVFHPTR--SIFFVS------TKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS------  599 (707)
Q Consensus       536 ~-~~~-~~V~~v~fspd~--~~l~v~------sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs------  599 (707)
                      + ... ..|+...|+|.+  ..|+.-      ..+.+++|.+..+..+.+-.--...=..+.|++.|++|++--      
T Consensus       168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks  247 (561)
T COG5354         168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS  247 (561)
T ss_pred             hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence            7 333 678899999964  344442      258999999987765544322222235688999998876531      


Q ss_pred             -----CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeC
Q 005235          600 -----REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRG  672 (707)
Q Consensus       600 -----~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g  672 (707)
                           ....++|+++...  -+.....-.++|..++|.|.+..|++++  .+.++.++      ++..+ +     .+..
T Consensus       248 nKsyfgesnLyl~~~~e~--~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~------~lr~N-l-----~~~~  313 (561)
T COG5354         248 NKSYFGESNLYLLRITER--SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVF------DLRGN-L-----RFYF  313 (561)
T ss_pred             ccceeccceEEEEeeccc--ccceeccccccceeeeecccCCceeEEecccccceeec------ccccc-e-----EEec
Confidence                 1246888988743  3333335578999999999999877665  67788888      44444 1     1122


Q ss_pred             CCCCCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEe
Q 005235          673 HTSSNGRGVMDCKFHPRQPWLFTAGAD---SVIRLYC  706 (707)
Q Consensus       673 h~~~~~~gV~~l~fspdg~~L~s~g~D---g~IrlWd  706 (707)
                      ....    =..+.|+|.++|++.+|-|   |.|-+|+
T Consensus       314 Pe~~----rNT~~fsp~~r~il~agF~nl~gni~i~~  346 (561)
T COG5354         314 PEQK----RNTIFFSPHERYILFAGFDNLQGNIEIFD  346 (561)
T ss_pred             CCcc----cccccccCcccEEEEecCCccccceEEec
Confidence            2222    3456788888888887765   4566664

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.87  E-value=1.3e-07  Score=96.51  Aligned_cols=255  Identities=15%  Similarity=0.196  Sum_probs=166.6

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEec---CCccce--EEe
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQ---HDKLDG--IRL  491 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~---~~~~~~--~~~  491 (707)
                      .+.|.+|.|...|+ .|++|..+|.|.++.-.....                      +.-..+..   ......  ...
T Consensus        25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~----------------------~ey~~~t~fqshepEFDYLkSl   81 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK----------------------GEYNFQTEFQSHEPEFDYLKSL   81 (433)
T ss_pred             hcceeeEEeecccc-eEeecCCCCeEEEeecccccc----------------------cceeeeeeeeccCcccchhhhh
Confidence            56789999999995 788888999999886332110                      00000000   000000  011


Q ss_pred             ccCCCeEEEEEcCCCC--EEEEEeCCCCccEEEEEECCCCcee----------------------------------eee
Q 005235          492 RHFKMVSSVEWHRRGD--YLSTVMPAGESRAIFMHQLSKKLSH----------------------------------RIP  535 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~--~lat~s~dg~~~~V~Iwdl~~~~~~----------------------------------~~~  535 (707)
                      .-...|..+.|.++++  .|+....|.   +|++|-+......                                  .+.
T Consensus        82 eieEKinkIrw~~~~n~a~FLlstNdk---tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv  158 (433)
T KOG1354|consen   82 EIEEKINKIRWLDDGNLAEFLLSTNDK---TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRV  158 (433)
T ss_pred             hhhhhhhhceecCCCCccEEEEecCCc---ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeee
Confidence            2345788999998764  566666666   9999987543211                                  022


Q ss_pred             e--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCC-eE--EEEEeCCC-----CCeEEEEEcCCC-CEEEEEECCCcE
Q 005235          536 F--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ-RL--IKKLETGL-----KEVSSIAIHPAG-DNLIVGSREGKL  604 (707)
Q Consensus       536 ~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~-~~--~~~l~~~~-----~~I~sl~~spdg-~~L~sGs~Dg~I  604 (707)
                      +  .|.-.|.++.++.|+..++++.|=.|-+|++.-- +.  +-.++++.     --|++..|||.. +.++-.|..|+|
T Consensus       159 ~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI  238 (433)
T KOG1354|consen  159 YANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI  238 (433)
T ss_pred             ccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence            2  4556789999999999999999999999998742 22  22233332     238899999976 566778889999


Q ss_pred             EEEECCCCCcce---EEee------------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE
Q 005235          605 CWFDMDLSSKPY---RVLK------------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI  669 (707)
Q Consensus       605 ~vwDl~~~~~~~---~~l~------------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~  669 (707)
                      ++.||+...-+-   +.+.            .--..|..|.|+++|+++++-+ =-+|+|||+.    +..    .|+.+
T Consensus       239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~n----me~----~pv~t  309 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLN----MEA----KPVET  309 (433)
T ss_pred             EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEecc----ccC----CcceE
Confidence            999998432111   1111            1124688999999999998753 3689999652    111    24566


Q ss_pred             eeCCCCCC-----------CCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          670 LRGHTSSN-----------GRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       670 l~gh~~~~-----------~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      ..-|..-.           -..-..|+|+.++..++|||....+++++
T Consensus       310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence            66553210           01125689999999999999999999987

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.84  E-value=1.1e-06  Score=96.28  Aligned_cols=247  Identities=15%  Similarity=0.092  Sum_probs=152.3

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc-cee----
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK-DLL----  462 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~-~v~----  462 (707)
                      ...++.++.+|.|..+|..+|+.+......+.+.+.....++  .+++++.++.|..||..++......... ...    
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~  182 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG  182 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence            457888899999999999999998877765544332222234  5777888999999999887642221110 000    


Q ss_pred             -----eecccccccCCCCcEEEEecCCccceEEec--cCC---C------e-EEEEEcCCCCEEEEEeCCCCccEEEEEE
Q 005235          463 -----HVETPTAPDDNMASIVSWLQHDKLDGIRLR--HFK---M------V-SSVEWHRRGDYLSTVMPAGESRAIFMHQ  525 (707)
Q Consensus       463 -----~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~--h~~---~------V-~~v~~sp~g~~lat~s~dg~~~~V~Iwd  525 (707)
                           ...-.+..+..++.+..++..++...-...  ...   .      + .+..+  .+..+++++.++   .+..+|
T Consensus       183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g---~l~a~d  257 (377)
T TIGR03300       183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQG---RVAALD  257 (377)
T ss_pred             CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCC---EEEEEE
Confidence                 000013445566777777776554322111  000   0      0 11111  356777788777   999999


Q ss_pred             CCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCc
Q 005235          526 LSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET-GLKEVSSIAIHPAGDNLIVGSREGK  603 (707)
Q Consensus       526 l~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~  603 (707)
                      ..++... ....... ...+.  ..+..+++++ +|.|..+|..+++.+..... ......+..+  .+.+|++++.+|.
T Consensus       258 ~~tG~~~-W~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~  331 (377)
T TIGR03300       258 LRSGRVL-WKRDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY  331 (377)
T ss_pred             CCCCcEE-EeeccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE
Confidence            9888655 3332111 11222  2355666666 89999999999988766532 2222333333  3679999999999


Q ss_pred             EEEEECCCCCcceEEeecCCCCEEE-EEEcCCCCEEEEEeCCCcEEEE
Q 005235          604 LCWFDMDLSSKPYRVLKCHPKDITN-VAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       604 I~vwDl~~~~~~~~~l~~h~~~I~~-vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      |+++|..++ +.+..+..+...+.. .++. ++ .|+.++.||.|+.|
T Consensus       332 l~~~d~~tG-~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       332 LHWLSREDG-SFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEECCCC-CEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            999999887 666677665544332 2332 33 47788899999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.83  E-value=2.2e-06  Score=91.80  Aligned_cols=217  Identities=16%  Similarity=0.136  Sum_probs=135.5

Q ss_pred             CCCcEEEEeCCCCeEEEEEecCCc--------EEEEEEccCCCccEEEEE-e-CCeEEEEECCCCCchhccc---cccee
Q 005235          396 TDGTVRIWEVESGRCLRVLEIGEA--------IQYVAWNPLPELPVLAVS-V-GQDVLILNTGLGNEEEQRR---VKDLL  462 (707)
Q Consensus       396 ~DgtVrIWd~~tg~~l~~l~~~~~--------V~~v~~spdg~~~lla~s-~-d~~V~lwd~~~~~~~~~~~---~~~v~  462 (707)
                      .+..|.|||+.|++.+..+.....        ...++++|||. .++++. . ++.|.++|+.++...-.-.   ...++
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy  153 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF  153 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence            688999999999999999886333        34889999994 455444 3 6899999998875421111   11111


Q ss_pred             eeccc-ccccCCCCcEEEEecCCccc-eE---EeccC--CCeE-EEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235          463 HVETP-TAPDDNMASIVSWLQHDKLD-GI---RLRHF--KMVS-SVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       463 ~~~~~-~~~~~~d~~i~iW~~~~~~~-~~---~~~h~--~~V~-~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~  533 (707)
                      ..+-. ....+.|+..........-. ..   ..-+.  ..+. .-.|.+ +|.++.+... |   .|.+.|++......
T Consensus       154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G---~V~~id~~~~~~~~  229 (352)
T TIGR02658       154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-G---KIFQIDLSSGDAKF  229 (352)
T ss_pred             EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-C---eEEEEecCCCccee
Confidence            11000 11122333333322221100 00   11011  0000 003445 7777666555 6   99999975543221


Q ss_pred             ----eee--c------cCCCeEEEEEeCCCCEEEEEe-----------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC
Q 005235          534 ----IPF--K------LHGLPVSSVFHPTRSIFFVST-----------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP  590 (707)
Q Consensus       534 ----~~~--~------~~~~V~~v~fspd~~~l~v~s-----------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp  590 (707)
                          ..+  .      ..+.++-++++|+++.++++.           .+.|.++|+.+++.+..+..+ ..+..|+++|
T Consensus       230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~  308 (352)
T TIGR02658       230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQ  308 (352)
T ss_pred             cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECC
Confidence                111  1      123455699999999999853           258999999999999998876 5789999999


Q ss_pred             CCC-EEEEEE-CCCcEEEEECCCCCcceEEe
Q 005235          591 AGD-NLIVGS-REGKLCWFDMDLSSKPYRVL  619 (707)
Q Consensus       591 dg~-~L~sGs-~Dg~I~vwDl~~~~~~~~~l  619 (707)
                      ||+ +|++.+ .++.|.++|+.++ +.++.+
T Consensus       309 Dgkp~lyvtn~~s~~VsViD~~t~-k~i~~i  338 (352)
T TIGR02658       309 DAKPLLYALSTGDKTLYIFDAETG-KELSSV  338 (352)
T ss_pred             CCCeEEEEeCCCCCcEEEEECcCC-eEEeee
Confidence            999 777666 5788999999877 666665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.78  E-value=6.6e-06  Score=87.32  Aligned_cols=304  Identities=13%  Similarity=0.116  Sum_probs=181.8

Q ss_pred             eCCCcEEEEeCCCCeEEEEEecC-------------CcEEEEE-Ecc-CCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          395 STDGTVRIWEVESGRCLRVLEIG-------------EAIQYVA-WNP-LPELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~~-------------~~V~~v~-~sp-dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      +..|.|.++|..+.+.. .+..+             .++.-+. |++ +|  .+++..+-|...|.+.-.+-....++..
T Consensus       284 q~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~G--d~ia~VSRGkaFi~~~~~~~~iqv~~~~  360 (668)
T COG4946         284 QNAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNG--DYIALVSRGKAFIMRPWDGYSIQVGKKG  360 (668)
T ss_pred             ecCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCC--cEEEEEecCcEEEECCCCCeeEEcCCCC
Confidence            44567999998775432 22221             1111222 443 34  3555555666777665544322222222


Q ss_pred             ceeeecc-----cccccCCCC-cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235          460 DLLHVET-----PTAPDDNMA-SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       460 ~v~~~~~-----~~~~~~~d~-~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~  533 (707)
                      .+--..+     ..+.+..+| .+.+++..+.+.......-+.|.++..+++|++++++....   .+.+.|+.++..+ 
T Consensus       361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~---el~vididngnv~-  436 (668)
T COG4946         361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF---ELWVIDIDNGNVR-  436 (668)
T ss_pred             ceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCce---EEEEEEecCCCee-
Confidence            2211111     256677777 89999999998877888889999999999999999988766   8999999999875 


Q ss_pred             eee-ccCCCeEEEEEeCCCCEEEEEe-----CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-------
Q 005235          534 IPF-KLHGLPVSSVFHPTRSIFFVST-----KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-------  600 (707)
Q Consensus       534 ~~~-~~~~~V~~v~fspd~~~l~v~s-----dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-------  600 (707)
                      ..= ...+-|+.+.|||++++||-+-     ...|++||+..++....- .....=.+-+|.|+|++|..-|.       
T Consensus       437 ~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs~RsLdPs~  515 (668)
T COG4946         437 LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYFLSARSLDPSN  515 (668)
T ss_pred             EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEEEeccccCCCC
Confidence            222 5678899999999999999874     478999999988765443 33344567789999998866543       


Q ss_pred             CCcEEEEECCCCCcceEEee--cCCCCE----------------EEEE--EcC----CCC-EEEEEeCCCcEEEEecccc
Q 005235          601 EGKLCWFDMDLSSKPYRVLK--CHPKDI----------------TNVA--FHR----SYP-LFASCSDDCTAYVFHGMVY  655 (707)
Q Consensus       601 Dg~I~vwDl~~~~~~~~~l~--~h~~~I----------------~~va--fsp----dg~-llaSgs~Dg~I~Vwd~~~~  655 (707)
                      |..+.=|....-.+|+-..-  +..++.                ..+.  ..|    .+. ..+++-.+|.|.+|...+.
T Consensus       516 Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~  595 (668)
T COG4946         516 DRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIH  595 (668)
T ss_pred             CeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEEeecc
Confidence            44443333332223332211  111100                0000  011    122 3345556777887765543


Q ss_pred             cCCCCC----Ccccce--EEeeCCCCC-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          656 SDLNQN----PLIVPL--EILRGHTSS-NGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       656 ~Dl~~~----~~~~pl--~~l~gh~~~-~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +....-    +..-.+  ..+...... -...|.++..|+|+..|+. -.||.++++++
T Consensus       596 Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~v  653 (668)
T COG4946         596 GEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDV  653 (668)
T ss_pred             chhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEec
Confidence            322211    110001  111111000 0123899999999999887 78999999875

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.77  E-value=2.7e-07  Score=94.35  Aligned_cols=238  Identities=15%  Similarity=0.200  Sum_probs=162.5

Q ss_pred             CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235          418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV  497 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V  497 (707)
                      +.|+....-|..+ .+++++.|.+++||--....+                          .|      ..+......++
T Consensus        25 d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q--------------------------~w------psI~~~mP~~~   71 (404)
T KOG1409|consen   25 DDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQ--------------------------YW------PSIYHYMPSPC   71 (404)
T ss_pred             hhhhhheeccCCC-CeEEccccceeeeEEeccccc--------------------------cC------chhhhhCCCCc
Confidence            3444444445442 588888888888886322111                          11      01122346788


Q ss_pred             EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee---eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC-CCCe
Q 005235          498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH---RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL-LKQR  571 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~---~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl-~~~~  571 (707)
                      +++++++....|+++-.+|   ++.-+.++..-..   .+.. .|...+..+.|+-...++++++ |..+ .|-. +.+.
T Consensus        72 ~~~~y~~e~~~L~vg~~ng---tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~  147 (404)
T KOG1409|consen   72 SAMEYVSESRRLYVGQDNG---TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGN  147 (404)
T ss_pred             eEeeeeccceEEEEEEecc---eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCC
Confidence            9999999999999999888   8877776543221   0333 7889999999998888898888 5544 4443 3333


Q ss_pred             EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL-SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~-~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      .+..+.-. .+.+++.+.-.  +..+|...|.|....+.. .-.++.++.+|...+.+++|.+...+|.+|+.|..|.+|
T Consensus       148 ~lg~Y~~~-~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w  224 (404)
T KOG1409|consen  148 RLGGYNFE-TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW  224 (404)
T ss_pred             cccceEee-ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence            22111100 11122222211  667777778776555432 226788999999999999999999999999999999999


Q ss_pred             ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |      +..++.+  ...+.+|...    |..+..-+.-+.|++++.||.|-+|+.
T Consensus       225 d------igg~~g~--~~el~gh~~k----V~~l~~~~~t~~l~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  225 D------IGGRKGT--AYELQGHNDK----VQALSYAQHTRQLISCGEDGGIVVWNM  269 (404)
T ss_pred             e------ccCCcce--eeeeccchhh----hhhhhhhhhheeeeeccCCCeEEEEec
Confidence            5      4444432  4578899887    998888888889999999999999984

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.72  E-value=9.7e-06  Score=97.78  Aligned_cols=236  Identities=15%  Similarity=0.193  Sum_probs=153.4

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEE----ECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEec
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLIL----NTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLR  492 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lw----d~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~  492 (707)
                      .+.|.++.|.++.+ .++++..+|.|.+.    +.....                                   ..+.-.
T Consensus        75 ~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~-----------------------------------~E~VG~  118 (928)
T PF04762_consen   75 NDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDE-----------------------------------IEIVGS  118 (928)
T ss_pred             CCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCce-----------------------------------eEEEEE
Confidence            46899999999984 78888889998887    332221                                   112224


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-------------C----------ceeeeee-c-----------
Q 005235          493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-------------K----------LSHRIPF-K-----------  537 (707)
Q Consensus       493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-------------~----------~~~~~~~-~-----------  537 (707)
                      ....|.+++||||+..|+.+..++   +|.+..-.-             +          +.. ..| +           
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~---~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe-TQF~Gs~gK~aa~~~~  194 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEG---NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE-TQFHGSAGKAAARQLR  194 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCC---EEEEEeccceEEEEeecCccccCCCceeeeccCccc-CccCcchhhhhhhhcc
Confidence            467899999999999999998877   666554210             0          000 111 0           


Q ss_pred             -------------cCCCeEEEEEeCCCCEEEEEe-----C--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEE
Q 005235          538 -------------LHGLPVSSVFHPTRSIFFVST-----K--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIV  597 (707)
Q Consensus       538 -------------~~~~V~~v~fspd~~~l~v~s-----d--g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~s  597 (707)
                                   ....-..++|-.||.+|++++     +  +.||||+-. |.+..+-..-.+--.+++|.|.|++||+
T Consensus       195 ~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~  273 (928)
T PF04762_consen  195 DPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS  273 (928)
T ss_pred             CCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence                         111345688999999999865     2  579999955 7666555544444568999999999988


Q ss_pred             EEC---CCcEEEEECCCCCcceEEe--e--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe
Q 005235          598 GSR---EGKLCWFDMDLSSKPYRVL--K--CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL  670 (707)
Q Consensus       598 Gs~---Dg~I~vwDl~~~~~~~~~l--~--~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l  670 (707)
                      ...   ...|.+|.-. | -....|  +  .....|..++|++++.+||..-.|. |++|....|.       .-.-+.+
T Consensus       274 ~q~~~~~~~VvFfErN-G-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-------WYLKqei  343 (928)
T PF04762_consen  274 SQRLPDRHDVVFFERN-G-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-------WYLKQEI  343 (928)
T ss_pred             EEEcCCCcEEEEEecC-C-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-------EEEEEEE
Confidence            754   3446777643 3 112222  2  3356799999999999999987666 9999766443       1112333


Q ss_pred             eCCCCCCCCCeeEEEEcCCCCE-EEEEeCCCcEEEEe
Q 005235          671 RGHTSSNGRGVMDCKFHPRQPW-LFTAGADSVIRLYC  706 (707)
Q Consensus       671 ~gh~~~~~~gV~~l~fspdg~~-L~s~g~Dg~IrlWd  706 (707)
                      .-....   ++..+.|||..+. |...+.+|.+..++
T Consensus       344 ~~~~~~---~~~~~~Wdpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  344 RFSSSE---SVNFVKWDPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             EccCCC---CCCceEECCCCCCEEEEEecCCcEEEEE
Confidence            322221   2555999997664 55555556665543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=3.1e-06  Score=94.48  Aligned_cols=307  Identities=12%  Similarity=0.134  Sum_probs=181.8

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCC---ccEEEEEeCCeEEEEECCCCCchhcc-cccc
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPE---LPVLAVSVGQDVLILNTGLGNEEEQR-RVKD  460 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~---~~lla~s~d~~V~lwd~~~~~~~~~~-~~~~  460 (707)
                      ..+-+++++...|.|.|||...+..+..+.. ..+|..++|-+..+   ..|++.....+|.+|+..+|...... ....
T Consensus        77 ~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~  156 (1062)
T KOG1912|consen   77 SSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE  156 (1062)
T ss_pred             ccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence            3455888999999999999999888877777 78899999977432   25777788899999999998653322 1112


Q ss_pred             eee-ecc---c---ccccCCCCcEEEEecC--------CccceEEeccCC----------------C---------eEEE
Q 005235          461 LLH-VET---P---TAPDDNMASIVSWLQH--------DKLDGIRLRHFK----------------M---------VSSV  500 (707)
Q Consensus       461 v~~-~~~---~---~~~~~~d~~i~iW~~~--------~~~~~~~~~h~~----------------~---------V~~v  500 (707)
                      +++ ..+   .   +..-+..|.+.+.+.-        +++..+...|..                .         ...+
T Consensus       157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f  236 (1062)
T KOG1912|consen  157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF  236 (1062)
T ss_pred             ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence            222 111   0   2222233333333221        111111112211                0         1235


Q ss_pred             EEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCC-------
Q 005235          501 EWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLK-------  569 (707)
Q Consensus       501 ~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~-------  569 (707)
                      +|+|.-+.++.....   +.+.|+|+.-..+. ... -..+.+.-+.+-|+  ...|++.. +|.+.+|--+.       
T Consensus       237 af~p~~rn~lfi~~p---rellv~dle~~~~l-~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~  312 (1062)
T KOG1912|consen  237 AFSPHWRNILFITFP---RELLVFDLEYECCL-AVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK  312 (1062)
T ss_pred             hcChhhhceEEEEec---cceEEEcchhhcee-EEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence            677755444433332   38999999877765 444 22333344444444  44566666 77777775432       


Q ss_pred             ---------CeE---EEEEe------------------------------------------------------------
Q 005235          570 ---------QRL---IKKLE------------------------------------------------------------  577 (707)
Q Consensus       570 ---------~~~---~~~l~------------------------------------------------------------  577 (707)
                               +..   ++.+.                                                            
T Consensus       313 ~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v  392 (1062)
T KOG1912|consen  313 PNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLV  392 (1062)
T ss_pred             cchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeeh
Confidence                     110   00000                                                            


Q ss_pred             ------------CCCCCeEEEEEcC-----------CC-------CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEE
Q 005235          578 ------------TGLKEVSSIAIHP-----------AG-------DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT  627 (707)
Q Consensus       578 ------------~~~~~I~sl~~sp-----------dg-------~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~  627 (707)
                                  +|....++...+|           .|       .++|+|+..|+|.++|+.++ ...+.+..|++.|.
T Consensus       393 ~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht~~Vk  471 (1062)
T KOG1912|consen  393 GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHTSLVK  471 (1062)
T ss_pred             hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhccccccee
Confidence                        0111112221111           12       26789999999999999887 77888999999999


Q ss_pred             EEEEcCCCCEEEEEe---------CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          628 NVAFHRSYPLFASCS---------DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       628 ~vafspdg~llaSgs---------~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                      ++.|-....++-.+.         .-+.+.|-      |+.++-.    +.++|-...+...|..+..|.-+++|+..=.
T Consensus       472 gleW~g~sslvSfsys~~n~~sg~vrN~l~vt------dLrtGls----k~fR~l~~~despI~~irvS~~~~yLai~Fr  541 (1062)
T KOG1912|consen  472 GLEWLGNSSLVSFSYSHVNSASGGVRNDLVVT------DLRTGLS----KRFRGLQKPDESPIRAIRVSSSGRYLAILFR  541 (1062)
T ss_pred             eeeeccceeEEEeeeccccccccceeeeEEEE------Ecccccc----cccccCCCCCcCcceeeeecccCceEEEEec
Confidence            999977665443222         11223344      4545432    3444444333445999999999999999988


Q ss_pred             CCcEEEEeC
Q 005235          699 DSVIRLYCH  707 (707)
Q Consensus       699 Dg~IrlWdl  707 (707)
                      |--+-+|++
T Consensus       542 ~~plEiwd~  550 (1062)
T KOG1912|consen  542 REPLEIWDL  550 (1062)
T ss_pred             ccchHHHhh
Confidence            888888874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.69  E-value=1.7e-07  Score=94.33  Aligned_cols=260  Identities=15%  Similarity=0.160  Sum_probs=163.3

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCe-EE----EEEec-------------CCcEEEEEEccCCC-ccEEEEEeCCeEEE
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGR-CL----RVLEI-------------GEAIQYVAWNPLPE-LPVLAVSVGQDVLI  444 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~-~l----~~l~~-------------~~~V~~v~~spdg~-~~lla~s~d~~V~l  444 (707)
                      |...+.++++|...|.|.++.-.... |-    ..|+.             ...|..+.|..++. ..++.++.+.+|++
T Consensus        34 fd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKl  113 (460)
T COG5170          34 FDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKL  113 (460)
T ss_pred             eccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeee
Confidence            66777899999999999999865432 11    11221             56789999987653 36888889999999


Q ss_pred             EECCCCCchhcccccceeeecccccccC---CCCcEEEEecCC-------ccceE-EeccCCCeEEEEEcCCCCEEEEEe
Q 005235          445 LNTGLGNEEEQRRVKDLLHVETPTAPDD---NMASIVSWLQHD-------KLDGI-RLRHFKMVSSVEWHRRGDYLSTVM  513 (707)
Q Consensus       445 wd~~~~~~~~~~~~~~v~~~~~~~~~~~---~d~~i~iW~~~~-------~~~~~-~~~h~~~V~~v~~sp~g~~lat~s  513 (707)
                      |.+......+...+.  ++-+|..+-++   +...+++=.+..       ....+ ...|..-|.+++|+.+...++++.
T Consensus       114 WKiyeknlk~va~nn--ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaD  191 (460)
T COG5170         114 WKIYEKNLKVVAENN--LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSAD  191 (460)
T ss_pred             eeeecccchhhhccc--cccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeecc
Confidence            997654322211111  01111000000   000011000000       00111 246888899999999988888765


Q ss_pred             CCCCccEEEEEECCCCceeeeee----cc-----CCCeEEEEEeCCCCEE--EEEeCCeEEEEECCCCeEE----EE---
Q 005235          514 PAGESRAIFMHQLSKKLSHRIPF----KL-----HGLPVSSVFHPTRSIF--FVSTKKNIRVYDLLKQRLI----KK---  575 (707)
Q Consensus       514 ~dg~~~~V~Iwdl~~~~~~~~~~----~~-----~~~V~~v~fspd~~~l--~v~sdg~I~iwDl~~~~~~----~~---  575 (707)
                      . -   .|.+|++...... ..+    .+     ..-|++..|||....+  .+++.|.|++-|++...+-    +.   
T Consensus       192 d-L---rINLWnl~i~D~s-FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~  266 (460)
T COG5170         192 D-L---RINLWNLEIIDGS-FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL  266 (460)
T ss_pred             c-e---eeeeccccccCCc-eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh
Confidence            3 2   7899998754332 221    22     3468899999975433  3344899999999843211    00   


Q ss_pred             ---------EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC------------CCE---EEEEE
Q 005235          576 ---------LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP------------KDI---TNVAF  631 (707)
Q Consensus       576 ---------l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~------------~~I---~~vaf  631 (707)
                               +..-...|+.+.|+++|+++++-++- +|.+||+.....|++++.-|.            .+|   ..+.|
T Consensus       267 ~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisf  345 (460)
T COG5170         267 TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISF  345 (460)
T ss_pred             ccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEe
Confidence                     11223558889999999999988774 899999998888999886552            334   35788


Q ss_pred             cCCCCEEEEEeCCCcEEEEe
Q 005235          632 HRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       632 spdg~llaSgs~Dg~I~Vwd  651 (707)
                      |.+...+.+||.....-|+-
T Consensus       346 Sgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         346 SGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             cCCcccccccccccceeeec
Confidence            88888888888766666653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.68  E-value=2.5e-06  Score=84.66  Aligned_cols=239  Identities=9%  Similarity=0.016  Sum_probs=153.8

Q ss_pred             CCCcEEEEeCCCCe--EEEEEecCCcEEEEEEccCC----CccEEEEEeCCeEEEEECCCCCchhcc---ccc------c
Q 005235          396 TDGTVRIWEVESGR--CLRVLEIGEAIQYVAWNPLP----ELPVLAVSVGQDVLILNTGLGNEEEQR---RVK------D  460 (707)
Q Consensus       396 ~DgtVrIWd~~tg~--~l~~l~~~~~V~~v~~spdg----~~~lla~s~d~~V~lwd~~~~~~~~~~---~~~------~  460 (707)
                      ....|-+|++-+..  .+..+      ..|.|.|..    ...|+++|..|...+|.+.+.+..+..   +..      .
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r  123 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR  123 (344)
T ss_pred             ceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence            33457788876543  23333      334454421    125777778999999999876543322   111      2


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEeccC-CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-e-ee-
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF-KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-I-PF-  536 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~-~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~-~~-  536 (707)
                      .....+.+..++.+.++++..+............ -.+.++++++++.++++++...   .|..|.+....... . .. 
T Consensus       124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~---~Vf~y~id~~sey~~~~~~a  200 (344)
T KOG4532|consen  124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSR---RVFRYAIDDESEYIENIYEA  200 (344)
T ss_pred             hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCC---cceEEEeCCccceeeeeEec
Confidence            2223333666778888888887766554322221 3488999999999999999866   89999887654321 2 22 


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE-----EEEeCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEE
Q 005235          537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI-----KKLETGLKEVSSIAIHPAG--DNLIVGSREGKLCWFD  608 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~-----~~l~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~vwD  608 (707)
                      .....-.+..|+.....+|+++ ||++.|||++.....     .+-..|.+.+..+.|++.|  ++|+..-.=+.+.+.|
T Consensus       201 ~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D  280 (344)
T KOG4532|consen  201 PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD  280 (344)
T ss_pred             ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence            4455667889999999999999 899999999864322     1223477889999999977  5666666667899999


Q ss_pred             CCCCCcceEE------eecCCC-CEEEEEEcCCCCEEEEEeC
Q 005235          609 MDLSSKPYRV------LKCHPK-DITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       609 l~~~~~~~~~------l~~h~~-~I~~vafspdg~llaSgs~  643 (707)
                      +++.......      +..|.. .|..-.|+.++.-+.+.+.
T Consensus       281 ~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  281 TRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             cccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence            9987432211      122322 2666667666654444443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.65  E-value=2.7e-05  Score=80.10  Aligned_cols=179  Identities=16%  Similarity=0.203  Sum_probs=115.1

Q ss_pred             eEEEEEc-CCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c-----cCCCeEEEEEeCCCCEEEEEe-C--------C
Q 005235          497 VSSVEWH-RRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K-----LHGLPVSSVFHPTRSIFFVST-K--------K  560 (707)
Q Consensus       497 V~~v~~s-p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~-----~~~~V~~v~fspd~~~l~v~s-d--------g  560 (707)
                      ...+++. ++|.+ +.+...    .+.++|+.++... ..+ .     ....++.+++.|+|.+.++.. .        +
T Consensus        42 ~~G~~~~~~~g~l-~v~~~~----~~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g  115 (246)
T PF08450_consen   42 PNGMAFDRPDGRL-YVADSG----GIAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPG  115 (246)
T ss_dssp             EEEEEEECTTSEE-EEEETT----CEEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSE
T ss_pred             CceEEEEccCCEE-EEEEcC----ceEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccccccc
Confidence            6777777 56554 444443    4566698887654 222 2     345678999999999777654 2        4


Q ss_pred             eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEE-EEECCCcEEEEECCCCCc------ceEEeecCCCCEEEEEEcC
Q 005235          561 NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLI-VGSREGKLCWFDMDLSSK------PYRVLKCHPKDITNVAFHR  633 (707)
Q Consensus       561 ~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~-sGs~Dg~I~vwDl~~~~~------~~~~l~~h~~~I~~vafsp  633 (707)
                      .|..++.. ++..... ..-...+.|+|+|+|+.|+ +-+..++|..|+++....      .+..+....+..-.+++..
T Consensus       116 ~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~  193 (246)
T PF08450_consen  116 SVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS  193 (246)
T ss_dssp             EEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT
T ss_pred             ceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC
Confidence            57777877 5543333 3345678999999999776 556778899999975432      1112222223478899999


Q ss_pred             CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE-cCCCCEEEEEe
Q 005235          634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF-HPRQPWLFTAG  697 (707)
Q Consensus       634 dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f-spdg~~L~s~g  697 (707)
                      +|++.++....+.|.+++-      . +.+   +..+.-....    +++++| -++...|+..+
T Consensus       194 ~G~l~va~~~~~~I~~~~p------~-G~~---~~~i~~p~~~----~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  194 DGNLWVADWGGGRIVVFDP------D-GKL---LREIELPVPR----PTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             TS-EEEEEETTTEEEEEET------T-SCE---EEEEE-SSSS----EEEEEEESTTSSEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEECC------C-ccE---EEEEcCCCCC----EEEEEEECCCCCEEEEEe
Confidence            9999888888999999953      2 332   4444444334    999999 47777776554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.62  E-value=8.6e-05  Score=76.34  Aligned_cols=217  Identities=16%  Similarity=0.200  Sum_probs=140.5

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEc-cCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWN-PLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~s-pdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      ..+.++++.-..+.|..|+..++... .+.... ..++++. +++  .++++.. +.+.++|+.++....          
T Consensus        10 ~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~~g--~l~v~~~-~~~~~~d~~~g~~~~----------   74 (246)
T PF08450_consen   10 RDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG-PNGMAFDRPDG--RLYVADS-GGIAVVDPDTGKVTV----------   74 (246)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTTEEE-EEESSS-EEEEEEECTTS--EEEEEET-TCEEEEETTTTEEEE----------
T ss_pred             CCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC-CceEEEEccCC--EEEEEEc-CceEEEecCCCcEEE----------
Confidence            35567788778899999999887653 344444 6677777 676  4666555 445555876652110          


Q ss_pred             cccccccCCCCcEEEEecCCccceEEec-cCCCeEEEEEcCCCCEEEEEeCCCC---c--cEEEEEECCCCceeeeeecc
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLR-HFKMVSSVEWHRRGDYLSTVMPAGE---S--RAIFMHQLSKKLSHRIPFKL  538 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~-h~~~V~~v~~sp~g~~lat~s~dg~---~--~~V~Iwdl~~~~~~~~~~~~  538 (707)
                                    +....      ... .....+.+++.++|+..++......   .  +.|..++.. +... .....
T Consensus        75 --------------~~~~~------~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~  132 (246)
T PF08450_consen   75 --------------LADLP------DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADG  132 (246)
T ss_dssp             --------------EEEEE------TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEE
T ss_pred             --------------Eeecc------CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecC
Confidence                          00000      001 3456788999999997777665421   1  367777776 4432 33355


Q ss_pred             CCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--C-----eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235          539 HGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--Q-----RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM  609 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~-----~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl  609 (707)
                      -...+.++|+|+++.|+++.  .+.|..|++..  .     +.+..+....+..-.+++..+|++.++....+.|.++|.
T Consensus       133 ~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  133 LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred             cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence            66788999999999888765  68899999863  2     112223333234789999999998888888899999998


Q ss_pred             CCCCcceEEeecCCCCEEEEEEc-CCCC-EEEEE
Q 005235          610 DLSSKPYRVLKCHPKDITNVAFH-RSYP-LFASC  641 (707)
Q Consensus       610 ~~~~~~~~~l~~h~~~I~~vafs-pdg~-llaSg  641 (707)
                      + + +.+..+......+++++|. ++.. +++|.
T Consensus       213 ~-G-~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  213 D-G-KLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             T-S-CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             C-c-cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            7 5 6677776665689999994 5544 44443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.58  E-value=8.1e-06  Score=82.17  Aligned_cols=178  Identities=18%  Similarity=0.174  Sum_probs=117.8

Q ss_pred             CCeEEEEEcC---CCC-EEEEEeCCCCccEEEEEECCCCceeeeee-c---cCC---CeEEEEEeCCCCEEEEEe-CCeE
Q 005235          495 KMVSSVEWHR---RGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF-K---LHG---LPVSSVFHPTRSIFFVST-KKNI  562 (707)
Q Consensus       495 ~~V~~v~~sp---~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~---~~~---~V~~v~fspd~~~l~v~s-dg~I  562 (707)
                      +.+..+.|..   +|. .++-+-..|   .|.++........ ..| +   ..-   ...++.|++.+..++++. +|.+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G---~i~~~r~~~~~ss-~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~  145 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARG---QIQLYRNDEDESS-VHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSI  145 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccc---eEEEEeeccceee-eeecccchhhhhheeeeEEEeeccCceEEEEcCCCcE
Confidence            3445555542   334 333344444   7777766544333 222 1   111   245778899998888886 7888


Q ss_pred             EEEECCCCeEE--EEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcce-EEeecCCCCEEEEEEcC-CCCE
Q 005235          563 RVYDLLKQRLI--KKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPY-RVLKCHPKDITNVAFHR-SYPL  637 (707)
Q Consensus       563 ~iwDl~~~~~~--~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~-~~l~~h~~~I~~vafsp-dg~l  637 (707)
                      .+.+.....+.  ++++.|.-.+....|+... +.+.+|+.|+.+..||++.....+ ...+-|...|.++.-+| ...+
T Consensus       146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence            86665555443  4788898888888886543 688999999999999999443333 33567888999998887 4669


Q ss_pred             EEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          638 FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       638 laSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      +++|+.|-.|++||.+..+    .    |+..-.     .++||+.+.++|.
T Consensus       226 I~TGsYDe~i~~~DtRnm~----k----Pl~~~~-----v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTRNMG----K----PLFKAK-----VGGGVWRIKHHPE  264 (339)
T ss_pred             EEEeccccceeeeehhccc----C----ccccCc-----cccceEEEEecch
Confidence            9999999999999876221    1    221111     1245999999984

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.58  E-value=7e-07  Score=93.22  Aligned_cols=150  Identities=16%  Similarity=0.187  Sum_probs=100.8

Q ss_pred             eEEEEEeCCCCEEEEEe-CCeEEEEECCCC----eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCc---EEEEECCCCC
Q 005235          542 PVSSVFHPTRSIFFVST-KKNIRVYDLLKQ----RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGK---LCWFDMDLSS  613 (707)
Q Consensus       542 V~~v~fspd~~~l~v~s-dg~I~iwDl~~~----~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~---I~vwDl~~~~  613 (707)
                      +..+..++.+.+|+++. +....+++....    +++...... ..-+++.|-.+...+.++..-|.   +.+|....+ 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence            44566788888999887 455445555432    333333322 23344445444555555444444   455554432 


Q ss_pred             cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE
Q 005235          614 KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL  693 (707)
Q Consensus       614 ~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L  693 (707)
                       +...+-+|-..++.|+|+||++.++++..|..|+|-+.....++.        .-+-||+..    |..++.-++.. |
T Consensus       143 -~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie--------sfclGH~eF----VS~isl~~~~~-L  208 (390)
T KOG3914|consen  143 -RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE--------SFCLGHKEF----VSTISLTDNYL-L  208 (390)
T ss_pred             -CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh--------hhccccHhh----eeeeeeccCce-e
Confidence             234456899999999999999999999999999998554222221        224589988    99999988765 8


Q ss_pred             EEEeCCCcEEEEeC
Q 005235          694 FTAGADSVIRLYCH  707 (707)
Q Consensus       694 ~s~g~Dg~IrlWdl  707 (707)
                      +|+|.|++|++||+
T Consensus       209 lS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  209 LSGSGDKTLRLWDI  222 (390)
T ss_pred             eecCCCCcEEEEec
Confidence            99999999999985

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.58  E-value=5.8e-06  Score=82.15  Aligned_cols=191  Identities=9%  Similarity=-0.057  Sum_probs=120.4

Q ss_pred             CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe--CCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCC
Q 005235          505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH--PTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLK  581 (707)
Q Consensus       505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs--pd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~  581 (707)
                      +..+||.|+..|   ...+|.+.+........ .+...|.-+.=.  ...+.+++..|.++++.++.-+.....+....-
T Consensus        83 kc~~la~gG~~g---~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~  159 (344)
T KOG4532|consen   83 KCVTLADGGASG---QFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNL  159 (344)
T ss_pred             cccEEEeccccc---eeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccc
Confidence            456899998877   99999998766541222 333333221110  112334444488888888875543333332223


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-ceE-EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCC
Q 005235          582 EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK-PYR-VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLN  659 (707)
Q Consensus       582 ~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~-~~~-~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~  659 (707)
                      .+.+++++++++++++.+....|..|.++..+. ..+ .+..-+..-.+..|+.....||+++.||++.|||++...-.+
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            388999999999999999999999999986532 222 222334455788999999999999999999999876322111


Q ss_pred             CCCcccceEEeeCCCCCCCCCeeEEEEcCCCC--EEEEEeCCCcEEEEe
Q 005235          660 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP--WLFTAGADSVIRLYC  706 (707)
Q Consensus       660 ~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~--~L~s~g~Dg~IrlWd  706 (707)
                      ..    .-.+-..|.+.    +..+.|++.|.  +|+..-.=+.+.+-|
T Consensus       240 ~~----~sstrp~hnGa----~R~c~Fsl~g~lDLLf~sEhfs~~hv~D  280 (344)
T KOG4532|consen  240 AE----ISSTRPHHNGA----FRVCRFSLYGLLDLLFISEHFSRVHVVD  280 (344)
T ss_pred             hh----hcccCCCCCCc----eEEEEecCCCcceEEEEecCcceEEEEE
Confidence            11    11122235555    99999999776  344333334444443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.57  E-value=5.8e-05  Score=76.29  Aligned_cols=228  Identities=15%  Similarity=0.155  Sum_probs=130.3

Q ss_pred             EEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEE
Q 005235          422 YVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVE  501 (707)
Q Consensus       422 ~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~  501 (707)
                      .++.+.+|  .++|+-.|..|.|=.....-..+                      +..+.+       .....-.=..++
T Consensus         2 ~~~~~~~G--k~lAi~qd~~iEiRsa~Ddf~si----------------------~~kcqV-------pkD~~PQWRkl~   50 (282)
T PF15492_consen    2 HLALSSDG--KLLAILQDQCIEIRSAKDDFSSI----------------------IGKCQV-------PKDPNPQWRKLA   50 (282)
T ss_pred             ceeecCCC--cEEEEEeccEEEEEeccCCchhe----------------------eEEEec-------CCCCCchheEEE
Confidence            35677888  69999999888775543321110                      111111       111122346799


Q ss_pred             EcCCCCEEEEEeCCCCccEEEEEECCCCceeeee----e--ccCCCeEEEEEeCCC-------CEEEEEeCCeEEEEECC
Q 005235          502 WHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP----F--KLHGLPVSSVFHPTR-------SIFFVSTKKNIRVYDLL  568 (707)
Q Consensus       502 ~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~----~--~~~~~V~~v~fspd~-------~~l~v~sdg~I~iwDl~  568 (707)
                      ||||+..||.+...|   +|+++|+........+    +  .....|..+.|-+..       .+|++...|.++-|-+.
T Consensus        51 WSpD~tlLa~a~S~G---~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs  127 (282)
T PF15492_consen   51 WSPDCTLLAYAESTG---TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS  127 (282)
T ss_pred             ECCCCcEEEEEcCCC---eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence            999999999999888   9999999875432111    1  223456677776533       34555558888877753


Q ss_pred             C-----CeEEEEEeC---CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEE--
Q 005235          569 K-----QRLIKKLET---GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLF--  638 (707)
Q Consensus       569 ~-----~~~~~~l~~---~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ll--  638 (707)
                      .     .+...++..   ....|+++.++|..++|++|+....      +.+   .  -.+-...+++-..-.+.++.  
T Consensus       128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~---~--s~a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG---M--SKASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             cccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc---c--ccccccCceEEEEcCCCCcEEE
Confidence            2     233334332   3457999999999998888765422      000   0  01122233333332222211  


Q ss_pred             EEEeCCCcE------EEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          639 ASCSDDCTA------YVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       639 aSgs~Dg~I------~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ++.+.|+..      .+|.+      .      .++.+... ....-+|..|..||||..||+...+|.|.||++
T Consensus       197 v~~~~~~~~~~~~~~~~~~~------~------~~~~fs~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRI------P------SFKFFSRQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             ccccCccccccccccceeec------c------ceeeeecc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence            122222211      22211      1      11122111 111235999999999999999999999999986

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.54  E-value=2.4e-06  Score=89.35  Aligned_cols=158  Identities=13%  Similarity=0.093  Sum_probs=105.0

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCe----EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGR----CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV  458 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~----~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~  458 (707)
                      .++..+.++|.+..+....+++.....    ++..+.....-+++.|..+.. ..+.+-..|.+                
T Consensus        69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~----------------  131 (390)
T KOG3914|consen   69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDV----------------  131 (390)
T ss_pred             ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCc----------------
Confidence            355667788888777776666654322    232322233333344433331 22222222222                


Q ss_pred             cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--  536 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--  536 (707)
                                      ..+.+|+..........+|-+.++.|+|+||+.+++++..|+   .|+|-........ ..|  
T Consensus       132 ----------------~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDE---kIRvs~ypa~f~I-esfcl  191 (390)
T KOG3914|consen  132 ----------------YSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDE---KIRVSRYPATFVI-ESFCL  191 (390)
T ss_pred             ----------------eeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCc---eEEEEecCcccch-hhhcc
Confidence                            233344444333344779999999999999999999999998   9999888776665 555  


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEe
Q 005235          537 KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLE  577 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~  577 (707)
                      +|+.-|..++.-++..++-+++|++|++||+.+|+++.++.
T Consensus       192 GH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  192 GHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence            89999999999887664444449999999999998886654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.53  E-value=4.1e-05  Score=89.95  Aligned_cols=261  Identities=13%  Similarity=0.130  Sum_probs=148.2

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc-------
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV-------  458 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~-------  458 (707)
                      ....-++.+..+|.|.+-|.++......=.....|.+++||||++ .++.++..+++.+.. .+..+....+.       
T Consensus        78 ~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~  155 (1265)
T KOG1920|consen   78 ADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMT-KDFEPIAEKPLDADDERK  155 (1265)
T ss_pred             cccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEe-ccccchhccccccccccc
Confidence            344566677888999999988776543333488999999999994 444444555555443 33222111111       


Q ss_pred             cceeeeccc---ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCC-C-ccEEEEEECCCCcee
Q 005235          459 KDLLHVETP---TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAG-E-SRAIFMHQLSKKLSH  532 (707)
Q Consensus       459 ~~v~~~~~~---~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg-~-~~~V~Iwdl~~~~~~  532 (707)
                      .....++|.   ..--++.|............. ....-.+.=++|+|-.+|.|||+..... . .+.|+|||-. +...
T Consensus       156 sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln  234 (1265)
T KOG1920|consen  156 SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN  234 (1265)
T ss_pred             cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh
Confidence            122233332   000000110000000000000 0001122335799999999999844221 1 3699999987 4443


Q ss_pred             eeee-ccCCCeEEEEEeCCCCEEEEEe----CCeEEEEECCC---CeEEEEEeCCCCCeEEEEEcCCCCEEEE---EECC
Q 005235          533 RIPF-KLHGLPVSSVFHPTRSIFFVST----KKNIRVYDLLK---QRLIKKLETGLKEVSSIAIHPAGDNLIV---GSRE  601 (707)
Q Consensus       533 ~~~~-~~~~~V~~v~fspd~~~l~v~s----dg~I~iwDl~~---~~~~~~l~~~~~~I~sl~~spdg~~L~s---Gs~D  601 (707)
                       ..- ...+.-.+++|-|.|..+++-.    |+.|.+|.-..   +...-.+......+..++|+.+++.||+   ....
T Consensus       235 -s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~  313 (1265)
T KOG1920|consen  235 -STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLEN  313 (1265)
T ss_pred             -cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeeccccc
Confidence             222 4455667899999999988742    67899997432   3333333334445899999999999988   4445


Q ss_pred             CcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecc
Q 005235          602 GKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYP--LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       602 g~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~--llaSgs~Dg~I~Vwd~~  653 (707)
                      ..|.+|-+.+.. -..+.+.......  +.|+|.-.  +.+.+ .+|.+.++|..
T Consensus       314 ~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~-~sG~~~v~~~~  365 (1265)
T KOG1920|consen  314 SLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLR-ESGQRLVRDFA  365 (1265)
T ss_pred             ceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEe-cCCcEEEEEEE
Confidence            559999886531 1122333333333  88998543  44444 77777777654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.52  E-value=4.5e-07  Score=100.32  Aligned_cols=200  Identities=17%  Similarity=0.239  Sum_probs=150.0

Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeecc--CCCeEEEEEeC--CCCEEEEEe-CCeEEEEE
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKL--HGLPVSSVFHP--TRSIFFVST-KKNIRVYD  566 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~--~~~V~~v~fsp--d~~~l~v~s-dg~I~iwD  566 (707)
                      ...+.+..+..+|.|+-+|.++.-|    +.+-|+...-...+-+.|  .-.|-.+.|+|  ..++-++.+ ...-.+|+
T Consensus        22 ~v~~~~~a~si~p~grdi~lAsr~g----l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn   97 (1081)
T KOG0309|consen   22 KVDGGFNAVSINPSGRDIVLASRQG----LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN   97 (1081)
T ss_pred             EecCcccceeeccccchhhhhhhcC----eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence            4567788899999999999999765    666777654332122222  23455677766  445555555 66777899


Q ss_pred             CCC---CeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235          567 LLK---QRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       567 l~~---~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs  642 (707)
                      +..   +..-..+.+|...|+.+.|+|.. +.|++++.|-.+..||+++...++..+..-..+...|+|+-..+-+.+.+
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence            875   35556678999999999999876 67899999999999999988888887776667778999998776666666


Q ss_pred             CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 005235          643 DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR-QPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       643 ~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd-g~~L~s~g~Dg~IrlWdl  707 (707)
                      ....|+|||.+.      +.  .|+..+++|...    |..++|..- -..+.+++.||+|++|+.
T Consensus       178 hg~~i~vwd~r~------gs--~pl~s~K~~vs~----vn~~~fnr~~~s~~~s~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  178 HGNDIFVWDLRK------GS--TPLCSLKGHVSS----VNSIDFNRFKYSEIMSSSNDGTVKFWDY  231 (1081)
T ss_pred             cCCceEEEeccC------CC--cceEEeccccee----eehHHHhhhhhhhhcccCCCCceeeecc
Confidence            778899996543      32  268889999887    888888542 235789999999999984

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=8.4e-06  Score=91.09  Aligned_cols=234  Identities=12%  Similarity=0.111  Sum_probs=158.8

Q ss_pred             cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235          419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS  498 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~  498 (707)
                      .-.++.|+|.|   |+|-++...|.+.|..+-.                                  ....+..|...|+
T Consensus        17 N~~A~Dw~~~G---LiAygshslV~VVDs~s~q----------------------------------~iqsie~h~s~V~   59 (1062)
T KOG1912|consen   17 NRNAADWSPSG---LIAYGSHSLVSVVDSRSLQ----------------------------------LIQSIELHQSAVT   59 (1062)
T ss_pred             cccccccCccc---eEEEecCceEEEEehhhhh----------------------------------hhhccccCcccee
Confidence            35688999999   8888888889888854421                                  1123456788899


Q ss_pred             EEEEcCCC------------CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC---C-CEEEEEe-CC
Q 005235          499 SVEWHRRG------------DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT---R-SIFFVST-KK  560 (707)
Q Consensus       499 ~v~~sp~g------------~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd---~-~~l~v~s-dg  560 (707)
                      .|.|.|-.            -.||++...|   .|.+||......+ .-+ .+..+++.++|-+.   . .+|++-. -.
T Consensus        60 ~VrWap~~~p~~llS~~~~~lliAsaD~~G---rIil~d~~~~s~~-~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss  135 (1062)
T KOG1912|consen   60 SVRWAPAPSPRDLLSPSSSQLLIASADISG---RIILVDFVLASVI-NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS  135 (1062)
T ss_pred             EEEeccCCCchhccCccccceeEEeccccC---cEEEEEehhhhhh-hhhcCCCcchhheeeeeccCcchheeEEecCCc
Confidence            99987631            1345555555   9999999988877 777 88889999999774   3 3344444 79


Q ss_pred             eEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCC------CcceEEeecCCC---------
Q 005235          561 NIRVYDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLS------SKPYRVLKCHPK---------  624 (707)
Q Consensus       561 ~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~------~~~~~~l~~h~~---------  624 (707)
                      +|.+|+..+|+.+.+........+|+.+.| +.+++..-+..|.|.+-+.-..      ++.++.-..|..         
T Consensus       136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a  215 (1062)
T KOG1912|consen  136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA  215 (1062)
T ss_pred             EEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence            999999999999988887777788899998 5577877777888877765321      122332223322         


Q ss_pred             ---C-------------EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235          625 ---D-------------ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       625 ---~-------------I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp  688 (707)
                         .             ...++|+|..+-++-..--..+.|+|.      .-+..   +.+..-..+    |+.-+.|-|
T Consensus       216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dl------e~~~~---l~vvpier~----~akfv~vlP  282 (1062)
T KOG1912|consen  216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDL------EYECC---LAVVPIERG----GAKFVDVLP  282 (1062)
T ss_pred             ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcc------hhhce---eEEEEeccC----CcceeEecc
Confidence               0             113678887764444445677999954      33322   333332222    155566666


Q ss_pred             CC--CEEEEEeCCCcEEEEe
Q 005235          689 RQ--PWLFTAGADSVIRLYC  706 (707)
Q Consensus       689 dg--~~L~s~g~Dg~IrlWd  706 (707)
                      ++  ..|++.-.||.+.+|-
T Consensus       283 ~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  283 DPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             CCCcceEEEEecCCeEEEEE
Confidence            55  4799999999999983

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.50  E-value=0.00012  Score=80.84  Aligned_cols=291  Identities=12%  Similarity=0.050  Sum_probs=161.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCc--E----------EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEA--I----------QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~--V----------~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~  455 (707)
                      ...+|.++.+|.|.-+|..+|+.+........  +          ..+... ++  .+++++.++.+..+|..++...-.
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~--~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GG--KVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CC--EEEEEcCCCEEEEEECCCCCCccc
Confidence            35788888999999999999999887765321  0          011221 23  577888889999999998865332


Q ss_pred             cccc-ceeeec----ccccccCCCCcEEEEecCCccceEEeccCCCe------EEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235          456 RRVK-DLLHVE----TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV------SSVEWHRRGDYLSTVMPAGESRAIFMH  524 (707)
Q Consensus       456 ~~~~-~v~~~~----~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V------~~v~~sp~g~~lat~s~dg~~~~V~Iw  524 (707)
                      .... .+.+..    -.+..+..++.+..++..++...-......+.      .+...  .+..++.++.++   .+...
T Consensus       146 ~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g---~v~a~  220 (394)
T PRK11138        146 TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNG---RVSAV  220 (394)
T ss_pred             ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCC---EEEEE
Confidence            2211 111100    01344556777777777665543222111110      01111  123455566666   78888


Q ss_pred             ECCCCceeeeee---ccCC-----CeEEEEEeC--CCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 005235          525 QLSKKLSHRIPF---KLHG-----LPVSSVFHP--TRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD  593 (707)
Q Consensus       525 dl~~~~~~~~~~---~~~~-----~V~~v~fsp--d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~  593 (707)
                      +..+++.. ..+   ...+     ....+..+|  .+..+++++ ++.+..+|+.+++.+.+.....  ...+..  .+.
T Consensus       221 d~~~G~~~-W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~~--~~~  295 (394)
T PRK11138        221 LMEQGQLI-WQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFAV--DGG  295 (394)
T ss_pred             EccCChhh-heeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcEE--ECC
Confidence            88877654 222   1100     001111122  134455555 8999999999998776654321  122333  467


Q ss_pred             EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC
Q 005235          594 NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH  673 (707)
Q Consensus       594 ~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh  673 (707)
                      .|++++.+|.|..+|..++....+.-..-.....+...  .+..|+.++.||.|.++|.      .++..   +....-.
T Consensus       296 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~------~tG~~---~~~~~~~  364 (394)
T PRK11138        296 RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR------EDGRF---VAQQKVD  364 (394)
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC------CCCCE---EEEEEcC
Confidence            88888999999999998874322211100111222222  2456778889999999954      34433   2222221


Q ss_pred             CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          674 TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       674 ~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ...   -.....+  .+..|+.++.||.|..+++
T Consensus       365 ~~~---~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        365 SSG---FLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCc---ceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            111   0122223  2447888899999988763

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=1.4e-06  Score=93.43  Aligned_cols=270  Identities=11%  Similarity=0.056  Sum_probs=165.1

Q ss_pred             CcEEEEEeCCCcEEEEeCCC-------CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          388 CYLEYKGSTDGTVRIWEVES-------GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~t-------g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      .+-++++|.|.+|++|.+..       ..|..+++. ..+|+.+.|-.+-   -..++.|+.|.+||+-.+....+    
T Consensus       747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l---r~i~ScD~giHlWDPFigr~Laq----  819 (1034)
T KOG4190|consen  747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL---RSIASCDGGIHLWDPFIGRLLAQ----  819 (1034)
T ss_pred             ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc---ceeeeccCcceeecccccchhHh----
Confidence            45678899999999999853       346666665 7899999998886   35567888999999866543211    


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEE-eCCCCccEEEEEECCCCceeeeee--
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTV-MPAGESRAIFMHQLSKKLSHRIPF--  536 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~-s~dg~~~~V~Iwdl~~~~~~~~~~--  536 (707)
                                        ..|..       ..+..+.|.|+- +-+...++.+ +...   +|+++|.+..... ..+  
T Consensus       820 ------------------~~dap-------k~~a~~~ikcl~-nv~~~iliAgcsaeS---TVKl~DaRsce~~-~E~kV  869 (1034)
T KOG4190|consen  820 ------------------MEDAP-------KEGAGGNIKCLE-NVDRHILIAGCSAES---TVKLFDARSCEWT-CELKV  869 (1034)
T ss_pred             ------------------hhcCc-------ccCCCceeEecc-cCcchheeeeccchh---hheeeecccccce-eeEEe
Confidence                              01111       111223333332 1123344444 4444   9999998876654 333  


Q ss_pred             ----ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEE-EECC
Q 005235          537 ----KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCW-FDMD  610 (707)
Q Consensus       537 ----~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~v-wDl~  610 (707)
                          ..++.+.+++..+.|+.++++- .|+|.+.|.++|+.+.....-......++ .|....|+....|..+.+ |..-
T Consensus       870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhal  948 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHAL  948 (1034)
T ss_pred             ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhc
Confidence                3356789999999999999986 89999999999988876654333333333 356677887778888887 7654


Q ss_pred             CCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235          611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ  690 (707)
Q Consensus       611 ~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg  690 (707)
                      .+ ....+.+....+..  -...-|+-|+++.....+.||-     |.........+..++...-.  +..++++--|-.
T Consensus       949 dg-imh~q~kpppepah--flqsvgpSLV~a~~Gn~lgVYa-----d~a~~ha~stitKiR~d~f~--G~lTala~LPLN 1018 (1034)
T KOG4190|consen  949 DG-IMHLQDKPPPEPAH--FLQSVGPSLVTAQNGNILGVYA-----DSAELHAESTITKIRPDEFP--GTLTALAPLPLN 1018 (1034)
T ss_pred             CC-eeeeccCCCCcchh--hhhccCceeEEeccCcEEEEEe-----cchhhhhhhhhccccccccC--Cccceeeecccc
Confidence            44 22222222111111  1122467788877767777773     22111111112222222111  116778888877


Q ss_pred             CEEEEEeCCCcEEEE
Q 005235          691 PWLFTAGADSVIRLY  705 (707)
Q Consensus       691 ~~L~s~g~Dg~IrlW  705 (707)
                      .-++.|+..|.|++.
T Consensus      1019 ~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 1019 CAFLAGNEHGAIALL 1033 (1034)
T ss_pred             chhhccCCCCceeec
Confidence            777888888988874

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.46  E-value=3.4e-06  Score=95.76  Aligned_cols=183  Identities=12%  Similarity=0.095  Sum_probs=132.4

Q ss_pred             CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC
Q 005235          505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKE  582 (707)
Q Consensus       505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~  582 (707)
                      ++..++.|+...   .+..+|+.+.+.. ... -..+.|.-+  ..+++++++|. .|+|.+-|+.+.+.++++.+|.+.
T Consensus       146 ~~~~~i~Gg~Q~---~li~~Dl~~~~e~-r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s  219 (1118)
T KOG1275|consen  146 GPSTLIMGGLQE---KLIHIDLNTEKET-RTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS  219 (1118)
T ss_pred             CCcceeecchhh---heeeeecccceee-eeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccc
Confidence            445666666544   7888899888765 444 222234433  44678888887 799999999999999999999999


Q ss_pred             eEEEEEcCCCCEEEEEEC---------CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEec
Q 005235          583 VSSIAIHPAGDNLIVGSR---------EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHG  652 (707)
Q Consensus       583 I~sl~~spdg~~L~sGs~---------Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~  652 (707)
                      |+.++++  |+.|++++.         |..|.|||+++. +.+..+.-+.++ .-+.|+|... .+|.+|..|...+-|.
T Consensus       220 iSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~  295 (1118)
T KOG1275|consen  220 ISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDT  295 (1118)
T ss_pred             eeeeecc--CCeEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccceeeccc
Confidence            9888775  889998876         456799999875 444444444443 5578999876 7888999999999864


Q ss_pred             ccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          653 MVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       653 ~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      ...    .++.   .....-|.  .+.++..+++++.+..|+.|..+|.|.+|.
T Consensus       296 ~~l----sNP~---~~~~~v~p--~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  296 ATL----SNPP---AGVKMVNP--NGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccc----CCCc---cceeEEcc--CCCcceeEEecCCCceEEEecccCcEeeec
Confidence            322    2222   22222222  223499999999999999999999999994

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.46  E-value=0.00018  Score=74.72  Aligned_cols=231  Identities=16%  Similarity=0.116  Sum_probs=145.6

Q ss_pred             CcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235          418 EAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK  495 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~  495 (707)
                      .....++.+|... ..++.+.  +....+||+.++....                       .++.   ..-..+.+|  
T Consensus         5 ~RgH~~a~~p~~~-~avafaRRPG~~~~v~D~~~g~~~~-----------------------~~~a---~~gRHFyGH--   55 (305)
T PF07433_consen    5 ARGHGVAAHPTRP-EAVAFARRPGTFALVFDCRTGQLLQ-----------------------RLWA---PPGRHFYGH--   55 (305)
T ss_pred             ccccceeeCCCCC-eEEEEEeCCCcEEEEEEcCCCceee-----------------------EEcC---CCCCEEecC--
Confidence            3456788999653 4554443  3467788877663211                       1110   111123444  


Q ss_pred             CeEEEEEcCCCCEEEEEeCCC--CccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCC------------
Q 005235          496 MVSSVEWHRRGDYLSTVMPAG--ESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKK------------  560 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg--~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg------------  560 (707)
                          .+||++|++|++.-.|-  ..+.|-|||....-.....| .+.-....+.+.|+++.|+++..|            
T Consensus        56 ----g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL  131 (305)
T PF07433_consen   56 ----GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL  131 (305)
T ss_pred             ----EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence                57999999999886543  35699999999333222667 555567788999999888887422            


Q ss_pred             -------eEEEEECCCCeEEEEEeC----CCCCeEEEEEcCCCCEEEEEECCCc-------EEEEECCCCCcceEEee--
Q 005235          561 -------NIRVYDLLKQRLIKKLET----GLKEVSSIAIHPAGDNLIVGSREGK-------LCWFDMDLSSKPYRVLK--  620 (707)
Q Consensus       561 -------~I~iwDl~~~~~~~~l~~----~~~~I~sl~~spdg~~L~sGs~Dg~-------I~vwDl~~~~~~~~~l~--  620 (707)
                             ++...|..+|+++.+..-    |...|..|+++++|..++..-+.|.       |.+++...   .+..+.  
T Consensus       132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p  208 (305)
T PF07433_consen  132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAP  208 (305)
T ss_pred             ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCC
Confidence                   356667778887776332    6667999999999987776655442       44444432   222222  


Q ss_pred             -----cCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235          621 -----CHPKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF  694 (707)
Q Consensus       621 -----~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~  694 (707)
                           .-...|-+|++++++.+++..| .-+.+.+||.      .++.+   +....-..      +..++-.+++ +++
T Consensus       209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~------~tg~~---~~~~~l~D------~cGva~~~~~-f~~  272 (305)
T PF07433_consen  209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA------ATGRL---LGSVPLPD------ACGVAPTDDG-FLV  272 (305)
T ss_pred             hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC------CCCCE---eeccccCc------eeeeeecCCc-eEE
Confidence                 2346789999999998776555 6678999954      44433   22221111      6667777766 777


Q ss_pred             EEeCCC
Q 005235          695 TAGADS  700 (707)
Q Consensus       695 s~g~Dg  700 (707)
                      |.|...
T Consensus       273 ssG~G~  278 (305)
T PF07433_consen  273 SSGQGQ  278 (305)
T ss_pred             eCCCcc
Confidence            766544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=8.4e-07  Score=95.14  Aligned_cols=157  Identities=15%  Similarity=0.121  Sum_probs=112.1

Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeC--CCCEEEEE-e-CCeEE
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHP--TRSIFFVS-T-KKNIR  563 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fsp--d~~~l~v~-s-dg~I~  563 (707)
                      ...|..+|.++.|-.+-++++++.  |   .|.+||.-.++......  ...+.+..+..-+  +.++++++ + ..+|+
T Consensus       780 Y~aHkk~i~~igfL~~lr~i~ScD--~---giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVK  854 (1034)
T KOG4190|consen  780 YQAHKKPIHDIGFLADLRSIASCD--G---GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVK  854 (1034)
T ss_pred             hhhccCcccceeeeeccceeeecc--C---cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhe
Confidence            568999999999999988888754  4   89999976665541122  2233333333333  34455554 4 79999


Q ss_pred             EEECCCCeEEEEEe-----CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEE
Q 005235          564 VYDLLKQRLIKKLE-----TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLF  638 (707)
Q Consensus       564 iwDl~~~~~~~~l~-----~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ll  638 (707)
                      ++|.+.+.-+..++     +....+.++++.+.|+.+++|-.+|.|.+.|.+++ +.+..++.-......++ .|..+.|
T Consensus       855 l~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqla-apsdq~L  932 (1034)
T KOG4190|consen  855 LFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLA-APSDQAL  932 (1034)
T ss_pred             eeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhc-CchhHHH
Confidence            99999886555544     23355899999999999999999999999999988 66666665444444443 3566778


Q ss_pred             EEEeCCCcEEE-Eecc
Q 005235          639 ASCSDDCTAYV-FHGM  653 (707)
Q Consensus       639 aSgs~Dg~I~V-wd~~  653 (707)
                      +....|.++.| |+..
T Consensus       933 ~~saldHslaVnWhal  948 (1034)
T KOG4190|consen  933 AQSALDHSLAVNWHAL  948 (1034)
T ss_pred             HhhcccceeEeeehhc
Confidence            88888889988 9754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=3.3e-06  Score=93.25  Aligned_cols=213  Identities=15%  Similarity=0.183  Sum_probs=150.6

Q ss_pred             ccccCCCCcEEEEecCCcc----------------ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce
Q 005235          468 TAPDDNMASIVSWLQHDKL----------------DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS  531 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~----------------~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~  531 (707)
                      ++.++.+|.+++..+.+..                ...+.+|...|.-++|+.+.+.|.+...+|   .|.+|-+-++..
T Consensus        29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G---lIiVWmlykgsW  105 (1189)
T KOG2041|consen   29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG---LIIVWMLYKGSW  105 (1189)
T ss_pred             EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc---eEEEEeeecccH
Confidence            5677788888887664211                022668999999999999988898888877   999999988876


Q ss_pred             eeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE-EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 005235          532 HRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI-KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWF  607 (707)
Q Consensus       532 ~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~-~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vw  607 (707)
                      ....+  ..++.|.+++|..+|..++... ||.|.+=.+...+.. +.+++  .....+.|++|...++.+-..|.+.++
T Consensus       106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hly  183 (1189)
T KOG2041|consen  106 CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLY  183 (1189)
T ss_pred             HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEe
Confidence            52223  5677899999999999998887 898888777654433 22322  234578899999999999999999999


Q ss_pred             ECCCCC------cc-e---EEeecCCCCEEEEEEc--------CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE
Q 005235          608 DMDLSS------KP-Y---RVLKCHPKDITNVAFH--------RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI  669 (707)
Q Consensus       608 Dl~~~~------~~-~---~~l~~h~~~I~~vafs--------pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~  669 (707)
                      |....-      .+ +   ..+......|..+.|.        |+.+.||.|-..|.++|..      -...+.  |+-.
T Consensus       184 dnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR------~eND~~--Pvv~  255 (1189)
T KOG2041|consen  184 DNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR------SENDPE--PVVV  255 (1189)
T ss_pred             cccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh------hcCCCC--CeEE
Confidence            986321      01 0   0111111224455553        5788999999999999873      222222  3333


Q ss_pred             eeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235          670 LRGHTSSNGRGVMDCKFHPRQPWLFTAGAD  699 (707)
Q Consensus       670 l~gh~~~~~~gV~~l~fspdg~~L~s~g~D  699 (707)
                      -.|..      |.++.|+++|..|+.+|.|
T Consensus       256 dtgm~------~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  256 DTGMK------IVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             ecccE------eecceecCCCcEEEEccCc
Confidence            33322      8899999999999999875

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.41  E-value=8.4e-07  Score=90.81  Aligned_cols=169  Identities=14%  Similarity=0.151  Sum_probs=121.5

Q ss_pred             EEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe
Q 005235          412 RVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL  491 (707)
Q Consensus       412 ~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~  491 (707)
                      ..++....-.| +|+-+-....++++.+..|.+-++.++-..                                    ..
T Consensus       207 ~SlQi~~a~~C-awSlni~gyhfs~G~sqqv~L~nvetg~~q------------------------------------sf  249 (425)
T KOG2695|consen  207 CSLQIPKAWSC-AWSLNIMGYHFSVGLSQQVLLTNVETGHQQ------------------------------------SF  249 (425)
T ss_pred             eeecCCcchhh-hhhhccceeeecccccceeEEEEeeccccc------------------------------------cc
Confidence            34444333333 676543224466777778888887765221                                    11


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC----ceeeeeeccCCCeEEEEEeC-CCCEEEEEe-CCeEEEE
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK----LSHRIPFKLHGLPVSSVFHP-TRSIFFVST-KKNIRVY  565 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~----~~~~~~~~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iw  565 (707)
                      ...+.|.++.|+..++.+..|+++|   .|...|++.+    ......+-|...|+++..-. ++++|++++ +|+|.+|
T Consensus       250 ~sksDVfAlQf~~s~nLv~~GcRng---eI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy  326 (425)
T KOG2695|consen  250 QSKSDVFALQFAGSDNLVFNGCRNG---EIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY  326 (425)
T ss_pred             ccchhHHHHHhcccCCeeEecccCC---cEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence            3467788889998899999999988   9999999875    11114457888899888766 677777777 9999999


Q ss_pred             ECCCCeE---EEEEeCCCCCeEE--EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235          566 DLLKQRL---IKKLETGLKEVSS--IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       566 Dl~~~~~---~~~l~~~~~~I~s--l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                      |++.-++   +.++.+|.+.-.-  +.+++....+++++.|...+||.++.+ .++.++..
T Consensus       327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~tipf  386 (425)
T KOG2695|consen  327 DLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTIPF  386 (425)
T ss_pred             eehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC-ceeeccCC
Confidence            9997666   8889888654332  344667788999999999999999977 66666653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.41  E-value=8.9e-07  Score=90.61  Aligned_cols=130  Identities=16%  Similarity=0.190  Sum_probs=104.0

Q ss_pred             EEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC-----eEEEEEeCCCCCeEEEEEcC-CC
Q 005235          520 AIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ-----RLIKKLETGLKEVSSIAIHP-AG  592 (707)
Q Consensus       520 ~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~-----~~~~~l~~~~~~I~sl~~sp-dg  592 (707)
                      .|.+-++.++..  ..|..++.|.++.|+..+++++.|. .|.|..+||+.+     .+...+. |...|+|+..-. ++
T Consensus       235 qv~L~nvetg~~--qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~  311 (425)
T KOG2695|consen  235 QVLLTNVETGHQ--QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQ  311 (425)
T ss_pred             eeEEEEeecccc--cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhcccc
Confidence            899999998876  4667889999999999999999998 899999999864     3444453 668899987766 78


Q ss_pred             CEEEEEECCCcEEEEECCCCCcc---eEEeecCCCCEEEE--EEcCCCCEEEEEeCCCcEEEEecc
Q 005235          593 DNLIVGSREGKLCWFDMDLSSKP---YRVLKCHPKDITNV--AFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       593 ~~L~sGs~Dg~I~vwDl~~~~~~---~~~l~~h~~~I~~v--afspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .+|++.+.+|+|.+||++.- ++   +.+..+|-..-.-+  ..++....++++++|+..+||.+.
T Consensus       312 q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  312 QKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             ceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            89999999999999999865 44   77788885433333  334566688899999999999554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.38  E-value=0.00028  Score=71.70  Aligned_cols=210  Identities=18%  Similarity=0.169  Sum_probs=129.5

Q ss_pred             CCCcEEEEeCCCCeEEEEEecC---CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccC
Q 005235          396 TDGTVRIWEVESGRCLRVLEIG---EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDD  472 (707)
Q Consensus       396 ~DgtVrIWd~~tg~~l~~l~~~---~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~  472 (707)
                      ++|+|..||..+|+.+......   ....+..+..++  .+++++.++.|..||..++.                     
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~l~~~d~~tG~---------------------   57 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGG--RVYVASGDGNLYALDAKTGK---------------------   57 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETT--EEEEEETTSEEEEEETTTSE---------------------
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCC--EEEEEcCCCEEEEEECCCCC---------------------
Confidence            4789999999999999988762   222322333444  67777899999999987763                     


Q ss_pred             CCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee-e-cc---CCCeEEEEE
Q 005235          473 NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP-F-KL---HGLPVSSVF  547 (707)
Q Consensus       473 ~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~-~-~~---~~~V~~v~f  547 (707)
                           .+|....         ...+...- ...+..+++++.++   .|..+|..++... .. . ..   .........
T Consensus        58 -----~~W~~~~---------~~~~~~~~-~~~~~~v~v~~~~~---~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~~~  118 (238)
T PF13360_consen   58 -----VLWRFDL---------PGPISGAP-VVDGGRVYVGTSDG---SLYALDAKTGKVL-WSIYLTSSPPAGVRSSSSP  118 (238)
T ss_dssp             -----EEEEEEC---------SSCGGSGE-EEETTEEEEEETTS---EEEEEETTTSCEE-EEEEE-SSCTCSTB--SEE
T ss_pred             -----EEEEeec---------ccccccee-eeccccccccccee---eeEecccCCccee-eeeccccccccccccccCc
Confidence                 2343221         11111101 12355666666666   8999999888877 44 2 11   111222233


Q ss_pred             eCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC----------e-EEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235          548 HPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKE----------V-SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP  615 (707)
Q Consensus       548 spd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~----------I-~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~  615 (707)
                      ...+..++++. ++.|..+|+.+|+.+.........          + ..+.+. ++ .+++++.++.+.-+|+.++...
T Consensus       119 ~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~  196 (238)
T PF13360_consen  119 AVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKL  196 (238)
T ss_dssp             EEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEE
T ss_pred             eEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEE
Confidence            33377788877 899999999999998888764322          1 233333 44 7888888886444499988433


Q ss_pred             eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          616 YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       616 ~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      . ...  ...+.. .....+..|+.++.++.|.+||.+
T Consensus       197 w-~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~  230 (238)
T PF13360_consen  197 W-SKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLK  230 (238)
T ss_dssp             E-EEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETT
T ss_pred             E-Eec--CCCccC-CceeeCCEEEEEeCCCEEEEEECC
Confidence            2 222  222332 144667777777799999999543

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.33  E-value=9.9e-05  Score=76.69  Aligned_cols=200  Identities=15%  Similarity=0.146  Sum_probs=129.3

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC--eEEEEEeCCCCEEEEEe------CCeEEEE
Q 005235          496 MVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL--PVSSVFHPTRSIFFVST------KKNIRVY  565 (707)
Q Consensus       496 ~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~--V~~v~fspd~~~l~v~s------dg~I~iw  565 (707)
                      ....++.+| .+..++.+-.-|  ....+||..++... ..+ ...+.  .-..+|+++|.+|++.-      .|.|-||
T Consensus         6 RgH~~a~~p~~~~avafaRRPG--~~~~v~D~~~g~~~-~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPG--TFALVFDCRTGQLL-QRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCC--cEEEEEEcCCCcee-eEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            345678888 444555555544  58889999988876 555 22222  22568999999999863      4899999


Q ss_pred             ECC-CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE------------------CCCcEEEEECCCCCcceEE--e--ecC
Q 005235          566 DLL-KQRLIKKLETGLKEVSSIAIHPAGDNLIVGS------------------REGKLCWFDMDLSSKPYRV--L--KCH  622 (707)
Q Consensus       566 Dl~-~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs------------------~Dg~I~vwDl~~~~~~~~~--l--~~h  622 (707)
                      |.. +-+.+..+..+.-....|.+.|+|..|+++.                  ++-.|...|..++ ..+..  +  ..|
T Consensus        83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~~~  161 (305)
T PF07433_consen   83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPDLH  161 (305)
T ss_pred             ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCcccc
Confidence            998 5577778887766677888999998888763                  2345666666666 44544  4  347


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCc-------EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE-E
Q 005235          623 PKDITNVAFHRSYPLFASCSDDCT-------AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL-F  694 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs~Dg~-------I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L-~  694 (707)
                      ...|+.++++++|..++.+-..|-       |-++....  .+....  .|-.....-...    |-+|++++++.++ +
T Consensus       162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~--~p~~~~~~l~~Y----~gSIa~~~~g~~ia~  233 (305)
T PF07433_consen  162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLP--APEEQWRRLNGY----IGSIAADRDGRLIAV  233 (305)
T ss_pred             ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceecc--CChHHHHhhCCc----eEEEEEeCCCCEEEE
Confidence            788999999999887666544332       33332110  000000  000011111222    8899999999877 5


Q ss_pred             EEeCCCcEEEEeC
Q 005235          695 TAGADSVIRLYCH  707 (707)
Q Consensus       695 s~g~Dg~IrlWdl  707 (707)
                      |+-.-|.+.+||.
T Consensus       234 tsPrGg~~~~~d~  246 (305)
T PF07433_consen  234 TSPRGGRVAVWDA  246 (305)
T ss_pred             ECCCCCEEEEEEC
Confidence            5567889999973

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.32  E-value=0.0013  Score=72.91  Aligned_cols=165  Identities=15%  Similarity=0.200  Sum_probs=105.7

Q ss_pred             EEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC-EEEEE----e-CC----eEEEEECCCCeEE----EEEeCCCCCeE
Q 005235          520 AIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS-IFFVS----T-KK----NIRVYDLLKQRLI----KKLETGLKEVS  584 (707)
Q Consensus       520 ~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~-~l~v~----s-dg----~I~iwDl~~~~~~----~~l~~~~~~I~  584 (707)
                      .+.++.+...+.....+ .......++.|+-..+ .+.+-    + +|    .-++|++...++.    ..+ .....|.
T Consensus       185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~  263 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVI  263 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcce
Confidence            56666666554432333 6666778888887443 33332    1 33    3567777654321    222 3446799


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc----CCCC
Q 005235          585 SIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYS----DLNQ  660 (707)
Q Consensus       585 sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~----Dl~~  660 (707)
                      |++++|+.+.|+.|+.||.|.+||...+   +..+....-..+.++|||+|.+|++|+.-|.+.+||+.-..    -+..
T Consensus       264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsE  340 (545)
T PF11768_consen  264 CCARSPSEDKLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSE  340 (545)
T ss_pred             EEecCcccceEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccc
Confidence            9999999999999999999999999755   33344445667899999999999999999999999864210    0111


Q ss_pred             CCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          661 NPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       661 ~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      .....++-.+..|-.. ..++..+.|.+.
T Consensus       341 d~~P~~~L~Ls~yf~~-~~~L~~iqW~~~  368 (545)
T PF11768_consen  341 DATPKSTLQLSKYFRV-SSSLVHIQWAPA  368 (545)
T ss_pred             cCCCccEEeeehhccC-cchhheeEeccC
Confidence            2222223333333321 233778888854

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.31  E-value=9.5e-06  Score=82.03  Aligned_cols=201  Identities=15%  Similarity=0.282  Sum_probs=131.7

Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee----ee-cc------------CCCeEEEEEeCCC---
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI----PF-KL------------HGLPVSSVFHPTR---  551 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~----~~-~~------------~~~V~~v~fspd~---  551 (707)
                      .....|++|.|...|.||++|...|   .|.++.-........    .| .|            ...|..+.|..++   
T Consensus        24 tead~ItaVefd~tg~YlatGDkgG---RVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~  100 (460)
T COG5170          24 TEADKITAVEFDETGLYLATGDKGG---RVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN  100 (460)
T ss_pred             cccceeeEEEeccccceEeecCCCc---eEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence            3456789999999999999998877   888887654331111    12 22            2357777776543   


Q ss_pred             CEEEEEeCCeEEEEECCCCe-------------------E------------------E-----EEE-eCCCCCeEEEEE
Q 005235          552 SIFFVSTKKNIRVYDLLKQR-------------------L------------------I-----KKL-ETGLKEVSSIAI  588 (707)
Q Consensus       552 ~~l~v~sdg~I~iwDl~~~~-------------------~------------------~-----~~l-~~~~~~I~sl~~  588 (707)
                      .+|+++.|++|++|-+....                   +                  +     +.. ..|...|.++.|
T Consensus       101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~  180 (460)
T COG5170         101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF  180 (460)
T ss_pred             eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence            34555669999999874320                   0                  0     001 234455889999


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCCcceEE--eecCC-----CCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccCCCC
Q 005235          589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRV--LKCHP-----KDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQ  660 (707)
Q Consensus       589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~--l~~h~-----~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~  660 (707)
                      ..+...++++ .|=+|.+|+++-....+..  ++.|.     .-|++..|||.. .+|...+..|.|++-|++      +
T Consensus       181 NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR------q  253 (460)
T COG5170         181 NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR------Q  253 (460)
T ss_pred             cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh------h
Confidence            9888888776 4678999998765443333  33443     358899999964 477777889999999554      3


Q ss_pred             CCcccc-------------eEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          661 NPLIVP-------------LEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       661 ~~~~~p-------------l~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ..+...             +.-+.+-...    |.++.|++.|++|++-+. -+|+|||+
T Consensus       254 ~alcdn~~klfe~~~D~v~~~ff~eivsS----ISD~kFs~ngryIlsRdy-ltvkiwDv  308 (460)
T COG5170         254 SALCDNSKKLFELTIDGVDVDFFEEIVSS----ISDFKFSDNGRYILSRDY-LTVKIWDV  308 (460)
T ss_pred             hhhccCchhhhhhccCcccchhHHHHhhh----hcceEEcCCCcEEEEecc-ceEEEEec
Confidence            222100             0111122223    899999999999988764 58999984

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.30  E-value=0.00017  Score=79.66  Aligned_cols=248  Identities=12%  Similarity=0.045  Sum_probs=144.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc--------
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK--------  459 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~--------  459 (707)
                      ...++.++.+|.|.-+|..||+.+......+.+.+--.-.++  .+++++.++.|..+|..++.........        
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            356778889999999999999998887765444321111244  5777778889999998888653221111        


Q ss_pred             ---ceeeecccccccCCCCcEEEEecCCccceEEeccCC--------CeEEEEEcC--CCCEEEEEeCCCCccEEEEEEC
Q 005235          460 ---DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK--------MVSSVEWHR--RGDYLSTVMPAGESRAIFMHQL  526 (707)
Q Consensus       460 ---~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~--------~V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl  526 (707)
                         .+... -.+..+..++.+...+..++...-......        ....+.-+|  .+..+++++.++   .+...|+
T Consensus       198 ~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g---~l~ald~  273 (394)
T PRK11138        198 ESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG---NLVALDL  273 (394)
T ss_pred             CCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC---eEEEEEC
Confidence               11100 013344556666666665443321110000        000111112  245666777777   8999999


Q ss_pred             CCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC-CCCeEEEEEcCCCCEEEEEECCCcE
Q 005235          527 SKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG-LKEVSSIAIHPAGDNLIVGSREGKL  604 (707)
Q Consensus       527 ~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~-~~~I~sl~~spdg~~L~sGs~Dg~I  604 (707)
                      .+++.. -..... ....+..  .+..+++++ ++.|..+|..+++.+...... .....+..+.  +..|++++.+|.|
T Consensus       274 ~tG~~~-W~~~~~-~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l  347 (394)
T PRK11138        274 RSGQIV-WKREYG-SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYL  347 (394)
T ss_pred             CCCCEE-EeecCC-CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEE
Confidence            888655 332111 1112222  344555555 899999999999876544321 1223333332  5688899999999


Q ss_pred             EEEECCCCCcceEEeecCCCCEE-EEEEcCCCCEEEEEeCCCcEEEE
Q 005235          605 CWFDMDLSSKPYRVLKCHPKDIT-NVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       605 ~vwDl~~~~~~~~~l~~h~~~I~-~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      .++|..++ +.+.........+. +..+  .+..|+.++.||.|+.+
T Consensus       348 ~~ld~~tG-~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~  391 (394)
T PRK11138        348 HWINREDG-RFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAI  391 (394)
T ss_pred             EEEECCCC-CEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEE
Confidence            99999987 55555443323232 2222  24467788999998887

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.28  E-value=0.00022  Score=72.46  Aligned_cols=180  Identities=16%  Similarity=0.090  Sum_probs=108.3

Q ss_pred             CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE-eCCC--
Q 005235          505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL-ETGL--  580 (707)
Q Consensus       505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l-~~~~--  580 (707)
                      ++.++++++.++   .|..+|..+++.. ..+...+.+...... .+..+++++ ++.|+.+|+.+|+.+.+. ....  
T Consensus        35 ~~~~v~~~~~~~---~l~~~d~~tG~~~-W~~~~~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~  109 (238)
T PF13360_consen   35 DGGRVYVASGDG---NLYALDAKTGKVL-WRFDLPGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP  109 (238)
T ss_dssp             ETTEEEEEETTS---EEEEEETTTSEEE-EEEECSSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred             eCCEEEEEcCCC---EEEEEECCCCCEE-EEeeccccccceeee-cccccccccceeeeEecccCCcceeeeeccccccc
Confidence            566777777766   9999999998876 555223322222222 344555555 889999999999998884 3221  


Q ss_pred             -CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC----------EEEEEEcCCCCEEEEEeCCCcEEE
Q 005235          581 -KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD----------ITNVAFHRSYPLFASCSDDCTAYV  649 (707)
Q Consensus       581 -~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~----------I~~vafspdg~llaSgs~Dg~I~V  649 (707)
                       .....+.....+..++++..++.|..+|+.++ +.+.........          +.+-....++ .++.++.++.+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~  187 (238)
T PF13360_consen  110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA  187 (238)
T ss_dssp             CSTB--SEEEEETTEEEEEETCSEEEEEETTTT-EEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred             cccccccCceEecCEEEEEeccCcEEEEecCCC-cEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence             11223333334889999999999999999988 555555543322          1222222344 6666667775444


Q ss_pred             EecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          650 FHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       650 wd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +|..      ++..   +  .......    +.. .....+..|+.++.++.|..||+
T Consensus       188 ~d~~------tg~~---~--w~~~~~~----~~~-~~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  188 VDLA------TGEK---L--WSKPISG----IYS-LPSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             EETT------TTEE---E--EEECSS-----ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred             EECC------CCCE---E--EEecCCC----ccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence            4443      3322   1  1111110    222 14567788888889999999985

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.27  E-value=9.8e-06  Score=80.28  Aligned_cols=175  Identities=11%  Similarity=0.095  Sum_probs=103.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEcc----------CCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNP----------LPELPVLAVSVGQDVLILNTGLGNEEEQR  456 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~sp----------dg~~~lla~s~d~~V~lwd~~~~~~~~~~  456 (707)
                      .||++..++.+......++.|...++.   .++..+++.+.          -+ ..++++..|+.+.+++.+.. ..+..
T Consensus        49 ~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~-~~~~~  126 (319)
T KOG4714|consen   49 ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKD-LALMS  126 (319)
T ss_pred             eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC-CceEecCCCceEEEEechHH-Hhhhh
Confidence            567777777777776666666544443   23334444321          11 25788888999999887652 11111


Q ss_pred             cccceeeeccc--------cccc------CCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCE-EEEEeCCCCccE
Q 005235          457 RVKDLLHVETP--------TAPD------DNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDY-LSTVMPAGESRA  520 (707)
Q Consensus       457 ~~~~v~~~~~~--------~~~~------~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~-lat~s~dg~~~~  520 (707)
                      .........++        +...      ..-+....|++....... .......|.+++-||..+. +++|+.+|   .
T Consensus       127 ~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg---~  203 (319)
T KOG4714|consen  127 RIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDG---I  203 (319)
T ss_pred             hcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCC---e
Confidence            11111100111        1111      122344455544322211 1222344999999996655 55556666   9


Q ss_pred             EEEEECCCCceeeeee-ccCCCeEEEEEeCC-CCEEEEEe-CCeEEEEECCC
Q 005235          521 IFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT-RSIFFVST-KKNIRVYDLLK  569 (707)
Q Consensus       521 V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd-~~~l~v~s-dg~I~iwDl~~  569 (707)
                      +-+||++........+ .|+.++..+.|||. +..|++++ ||.+..||..+
T Consensus       204 ~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  204 VGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            9999999886552233 89999999999995 45688888 99999999864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.26  E-value=2.7e-06  Score=60.53  Aligned_cols=38  Identities=26%  Similarity=0.492  Sum_probs=35.7

Q ss_pred             cceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          665 VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       665 ~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .++.++.+|...    |.+|+|+|++.+|+|++.|++|++||
T Consensus         2 ~~~~~~~~h~~~----i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSS----INSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSS----EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCc----EEEEEEecccccceeeCCCCEEEEEC
Confidence            358899999998    99999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.25  E-value=0.00032  Score=79.21  Aligned_cols=194  Identities=14%  Similarity=0.041  Sum_probs=120.1

Q ss_pred             EcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-C----CeEEEEECCCCeEEEEE
Q 005235          502 WHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-K----KNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       502 ~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-d----g~I~iwDl~~~~~~~~l  576 (707)
                      ++++|..+...+.  ..+.+.+.|..+.... ..+...+....++++|++.++++++ +    .++...+......+..+
T Consensus       200 lpnDGk~l~~~~e--y~~~vSvID~etmeV~-~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        200 LPNDGKDLDDPKK--YRSLFTAVDAETMEVA-WQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cCCCCCEeecccc--eeEEEEEEECccceEE-EEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            3456655433321  2347777788776554 4444444667889999999998875 1    33433333322222222


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC----CCcceEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235          577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL----SSKPYRVLKCHPKDITNVAFHRSYPLFASCS-DDCTAYVFH  651 (707)
Q Consensus       577 ~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~----~~~~~~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd  651 (707)
                      ...  .+  .++.++|++..++  +++|.+.|..+    +......+. -......|+++|||+++++++ .+.+|.|.|
T Consensus       277 ni~--~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVID  349 (635)
T PRK02888        277 NIA--RI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVID  349 (635)
T ss_pred             chH--HH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence            111  00  1334578877763  67899999987    323444443 345678999999999776555 689999998


Q ss_pred             cccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          652 GMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       652 ~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +....++..+.+ .+-..+.+.-.. ++|-...+|.++|....|.-.|..|-.||+
T Consensus       350 v~k~k~~~~~~~-~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        350 VRKLDDLFDGKI-KPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             ChhhhhhhhccC-CccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence            775444333322 233333332221 455788999999998888899999999985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.23  E-value=0.00015  Score=79.94  Aligned_cols=136  Identities=22%  Similarity=0.253  Sum_probs=94.5

Q ss_pred             cEEEEecCCccceE--EeccCCCeEEEEEcC-CCCEEEEEeC----CC-CccEEEEEECCCCceeeee---eccCCCeEE
Q 005235          476 SIVSWLQHDKLDGI--RLRHFKMVSSVEWHR-RGDYLSTVMP----AG-ESRAIFMHQLSKKLSHRIP---FKLHGLPVS  544 (707)
Q Consensus       476 ~i~iW~~~~~~~~~--~~~h~~~V~~v~~sp-~g~~lat~s~----dg-~~~~V~Iwdl~~~~~~~~~---~~~~~~V~~  544 (707)
                      .+.++...+.....  .........++.|+. +...+.++..    +| ..-...+|++...+.+...   +...+.|.+
T Consensus       185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~  264 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC  264 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence            44555555443322  333455567888876 4445555432    22 1124567888776655322   278899999


Q ss_pred             EEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235          545 SVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       545 v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~  613 (707)
                      ++++|+...|+.|+ ||.|.+||...+...  +....-.++.++|||+|..+++|+..|.+.+||+..+.
T Consensus       265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  265 CARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            99999999999988 999999998776332  22223457899999999999999999999999998753

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.23  E-value=4.2e-06  Score=59.50  Aligned_cols=39  Identities=26%  Similarity=0.465  Sum_probs=37.0

Q ss_pred             CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                      ++++.++.+|...|++|+|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=0.00026  Score=80.75  Aligned_cols=217  Identities=13%  Similarity=0.137  Sum_probs=137.1

Q ss_pred             cccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCc-EEEEEEccCCCccEEEEEeCC-----eEEEEECCCCCchh
Q 005235          382 KPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEA-IQYVAWNPLPELPVLAVSVGQ-----DVLILNTGLGNEEE  454 (707)
Q Consensus       382 ~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~-V~~v~~spdg~~~lla~s~d~-----~V~lwd~~~~~~~~  454 (707)
                      ..+......++.|+.+|.|.+.+ .+-+.++.|+. ... |..+ |.-++...|++.+.|+     .|+||+++..+..-
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            34556667899999999888877 22334466665 333 4444 4444434677777654     47888876532110


Q ss_pred             cccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEE--CCCCcee
Q 005235          455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQ--LSKKLSH  532 (707)
Q Consensus       455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwd--l~~~~~~  532 (707)
                      .   ..++            +..+++...      ......++.+++.|.+-+.+|+|-.+|   .|..+.  +...+..
T Consensus       107 s---P~c~------------~~~ri~~~~------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG---~V~~~~GDi~RDrgs  162 (933)
T KOG2114|consen  107 S---PQCL------------YEHRIFTIK------NPTNPSPASSLAVSEDLKTIVCGFTNG---LVICYKGDILRDRGS  162 (933)
T ss_pred             C---ccee------------eeeeeeccC------CCCCCCcceEEEEEccccEEEEEecCc---EEEEEcCcchhcccc
Confidence            0   0000            001111100      112356789999999989999999888   777764  2222222


Q ss_pred             eeee--ccCCCeEEEEEeCCCCE-EEEEeCCeEEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          533 RIPF--KLHGLPVSSVFHPTRSI-FFVSTKKNIRVYDLLKQR-LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       533 ~~~~--~~~~~V~~v~fspd~~~-l~v~sdg~I~iwDl~~~~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                      +..+  ..+.+|+.++|..++.. +++++...|.+|.+.... ..+.+..+...+.|.++++....+++++. ..|.+||
T Consensus       163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~  241 (933)
T KOG2114|consen  163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYD  241 (933)
T ss_pred             ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEc
Confidence            1333  77889999999988877 788888999999998544 25557777788999999876664655543 4699999


Q ss_pred             CCCCCcceEEee-cCCCCE
Q 005235          609 MDLSSKPYRVLK-CHPKDI  626 (707)
Q Consensus       609 l~~~~~~~~~l~-~h~~~I  626 (707)
                      .+.. .+-..+. +|...+
T Consensus       242 sd~~-~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  242 SDGR-GPCFAFEVGEKKEM  259 (933)
T ss_pred             CCCc-ceeeeecCCCeEEE
Confidence            8754 4444454 665433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.11  E-value=0.0006  Score=69.12  Aligned_cols=207  Identities=14%  Similarity=0.144  Sum_probs=111.5

Q ss_pred             CCCCCCCCCc-ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--------CCcEEEEEEccCC-----CccEEEEEe
Q 005235          373 PKLPSRKDLK-PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--------GEAIQYVAWNPLP-----ELPVLAVSV  438 (707)
Q Consensus       373 p~lp~~~~l~-pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--------~~~V~~v~~spdg-----~~~lla~s~  438 (707)
                      |+-|.|+--+ .|+.++.+|+.+...|+|+++|+.. ..+..+..        ..+|..|.|.+-.     ...|++...
T Consensus        39 pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y  117 (282)
T PF15492_consen   39 PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY  117 (282)
T ss_pred             CCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec
Confidence            4444443322 3678888999999999999999864 44434433        4566677675532     124666666


Q ss_pred             CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc
Q 005235          439 GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES  518 (707)
Q Consensus       439 d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~  518 (707)
                      .|.++-|-+..+.                     +.+-...+..     .....+...|.++.++|..+.|++|+.....
T Consensus       118 ~G~L~Sy~vs~gt---------------------~q~y~e~hsf-----sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~  171 (282)
T PF15492_consen  118 RGQLRSYLVSVGT---------------------NQGYQENHSF-----SFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ  171 (282)
T ss_pred             cceeeeEEEEccc---------------------CCcceeeEEE-----EecccCCCceeEEEEcCCCCEEEEeccCCCC
Confidence            6665555432210                     0111111100     0122457789999999999988877754311


Q ss_pred             --------cEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC
Q 005235          519 --------RAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP  590 (707)
Q Consensus       519 --------~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp  590 (707)
                              ..+..|.+-.+...          ......-+...-.+.  .+-.+|.+-+.+...........|..|.+||
T Consensus       172 ~~~s~a~~~GLtaWRiL~~~Py----------yk~v~~~~~~~~~~~--~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP  239 (282)
T PF15492_consen  172 DGMSKASSCGLTAWRILSDSPY----------YKQVTSSEDDITASS--KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP  239 (282)
T ss_pred             CccccccccCceEEEEcCCCCc----------EEEccccCccccccc--cccceeeccceeeeeccccCCCceEEEEECC
Confidence                    01222222211110          000000000000000  1122333333222222223456799999999


Q ss_pred             CCCEEEEEECCCcEEEEECCCCCcceEEe
Q 005235          591 AGDNLIVGSREGKLCWFDMDLSSKPYRVL  619 (707)
Q Consensus       591 dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l  619 (707)
                      ||..||+...+|.|.+|++-.- ++...+
T Consensus       240 dg~~La~ih~sG~lsLW~iPsL-~~~~~W  267 (282)
T PF15492_consen  240 DGSLLACIHFSGSLSLWEIPSL-RLQRSW  267 (282)
T ss_pred             CCCEEEEEEcCCeEEEEecCcc-hhhccc
Confidence            9999999999999999999754 444433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=4.8e-05  Score=85.91  Aligned_cols=142  Identities=17%  Similarity=0.235  Sum_probs=107.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeE
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRL  572 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~  572 (707)
                      ...++|++++  +.+|+.|..+|   .|++++..... . ..|.|...      .-+|.++++|+ ||+|.|..+-+.+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g---~v~~~~~~~~~-~-~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRG---AVYLTTCQGNP-K-TNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccc---eEEEEecCCcc-c-cccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            4556777775  67899999988   99999887654 2 34433222      56799999999 89999999998887


Q ss_pred             EEEEeCCCCCeEEEEEcCC-----CCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235          573 IKKLETGLKEVSSIAIHPA-----GDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT  646 (707)
Q Consensus       573 ~~~l~~~~~~I~sl~~spd-----g~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~  646 (707)
                      ..++.-+ .++.+++++|+     .+.+++|+..| +.++.-.--+ +--..+....++|.++.|.  |.++|-++++| 
T Consensus       106 ~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-  180 (846)
T KOG2066|consen  106 ITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-  180 (846)
T ss_pred             ceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-
Confidence            7777655 78999999998     47899999988 7776543211 1112455667899999995  78999998888 


Q ss_pred             EEEEecc
Q 005235          647 AYVFHGM  653 (707)
Q Consensus       647 I~Vwd~~  653 (707)
                      |+|||..
T Consensus       181 v~vyd~~  187 (846)
T KOG2066|consen  181 VKVYDTP  187 (846)
T ss_pred             cEEEecc
Confidence            8999654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.11  E-value=5.9e-05  Score=86.02  Aligned_cols=181  Identities=15%  Similarity=0.156  Sum_probs=132.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      ...++-|+-...+...|+.+++..+.... .+.|.-|+.+  + +.+++|...|+|.+-|+.+....             
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~i-------------  210 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETI-------------  210 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-cEEEeecccceEEeecCCcCcee-------------
Confidence            35677777778888999998888777766 3346555544  3 36888889999999998765321             


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC------CccEEEEEECCCCceeeeeeccCC
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG------ESRAIFMHQLSKKLSHRIPFKLHG  540 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg------~~~~V~Iwdl~~~~~~~~~~~~~~  540 (707)
                                           ..+..|++.|..+..  .|+.|++++..+      -+.-|+|||++.-+.. .|+....
T Consensus       211 ---------------------ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral-~PI~~~~  266 (1118)
T KOG1275|consen  211 ---------------------HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL-SPIQFPY  266 (1118)
T ss_pred             ---------------------eeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhcc-CCccccc
Confidence                                 135578888887665  588999998765      2457899999998877 7774444


Q ss_pred             CeEEEEEeCCC-CEEEEEe-CCeEEEEE---CCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          541 LPVSSVFHPTR-SIFFVST-KKNIRVYD---LLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       541 ~V~~v~fspd~-~~l~v~s-dg~I~iwD---l~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                      ..+-+.|+|.- ..+++++ .|...+.|   +... .-++.+......+.++++|++|+.++.|..+|.|.+|-
T Consensus       267 ~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  267 GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            44778899964 3455665 79999999   3333 22333334445599999999999999999999999997

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.10  E-value=0.00015  Score=80.19  Aligned_cols=154  Identities=18%  Similarity=0.218  Sum_probs=106.6

Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeCCCCc-cEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--C--CeEE
Q 005235          489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGES-RAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--K--KNIR  563 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~-~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--d--g~I~  563 (707)
                      .+..-...+..-+|++++..++..+..... ..+.++++.++... ..+...+.-...+|+|+|+.|+.+.  +  -.|.
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-VILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-eeeccCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence            344455667778999999987777554433 47999999988765 4445566666789999999988776  4  4578


Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-Cc--EEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235          564 VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-GK--LCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS  640 (707)
Q Consensus       564 iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g~--I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS  640 (707)
                      ++|+..+.. ..+....+.-+.-.|+|+|+.|+..|.. |+  |.+++++.+.  ...+......-..-.|+|+|.+|+.
T Consensus       266 ~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         266 LMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             EEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--eeEeeccCCCCcCccCCCCCCEEEE
Confidence            888887764 3466555555577899999998877653 43  6666766543  2344433333337889999998887


Q ss_pred             EeCC-Cc
Q 005235          641 CSDD-CT  646 (707)
Q Consensus       641 gs~D-g~  646 (707)
                      .+.. |.
T Consensus       343 ~~~~~g~  349 (425)
T COG0823         343 ESSSGGQ  349 (425)
T ss_pred             EeccCCc
Confidence            7743 44

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.10  E-value=0.0009  Score=75.74  Aligned_cols=171  Identities=10%  Similarity=0.004  Sum_probs=108.7

Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC-ccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE-SRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIF  554 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~-~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l  554 (707)
                      .+...|..+......+.-.+....++++++|+++++.+.+.. ..++..-+....... ..|...+   ..++.++|++.
T Consensus       216 ~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~-vvfni~~---iea~vkdGK~~  291 (635)
T PRK02888        216 LFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV-VVFNIAR---IEEAVKAGKFK  291 (635)
T ss_pred             EEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceE-EEEchHH---HHHhhhCCCEE
Confidence            334444444333333333446677899999999988874431 124444443332222 2231111   01344578877


Q ss_pred             EEEeCCeEEEEECCC-----CeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCc-----------ceE
Q 005235          555 FVSTKKNIRVYDLLK-----QRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSK-----------PYR  617 (707)
Q Consensus       555 ~v~sdg~I~iwDl~~-----~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~-----------~~~  617 (707)
                      .+ .++.|.+.|..+     .+.+..+..+ .....|+++|||+++++++ .+..|.|+|+.+...           ...
T Consensus       292 ~V-~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva  369 (635)
T PRK02888        292 TI-GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA  369 (635)
T ss_pred             EE-CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence            76 468899999998     4566666655 5678999999999887665 488999999986422           122


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      ...-- ..-...+|.++|..+.|..-|..|..|++.
T Consensus       370 evevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        370 EPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             eeccC-CCcceEEECCCCCEEEeEeecceeEEEehH
Confidence            22221 223467899999999999999999999765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.08  E-value=0.0015  Score=71.05  Aligned_cols=268  Identities=16%  Similarity=0.242  Sum_probs=142.5

Q ss_pred             eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-hcccc-cceeeecccccccC
Q 005235          395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-EQRRV-KDLLHVETPTAPDD  472 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-~~~~~-~~v~~~~~~~~~~~  472 (707)
                      +..+.+.|+|+.+++..........+....|||+|  ..++-..++.|.+++..++... +.... ..+.. +.+     
T Consensus        20 s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g--~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~n-G~~-----   91 (353)
T PF00930_consen   20 SFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDG--KYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYN-GVP-----   91 (353)
T ss_dssp             EEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSS--TEEEEEETTEEEEESSTTSEEEESES--TTTEEE-SB------
T ss_pred             ccceeEEEEecCCCceEECcCCccccccceeecCC--CeeEEEecCceEEEECCCCCeEEeccccceeEEc-Ccc-----
Confidence            44567999999998766444446788999999999  5777888899999987665321 11000 00000 000     


Q ss_pred             CCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC---------------------------------Ccc
Q 005235          473 NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG---------------------------------ESR  519 (707)
Q Consensus       473 ~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg---------------------------------~~~  519 (707)
                       +     |-.       ...--+.-..+-|||+|++||....|.                                 ..-
T Consensus        92 -d-----wvy-------eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   92 -D-----WVY-------EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             -------HHH-------HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             -c-----eec-------cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence             0     000       000001112344455554444433221                                 122


Q ss_pred             EEEEEECCCCceeeeee-----ccCCCeEEEEEeCCCCEEEEE-e---C--CeEEEEECCCCeEEEEE-eCCCCCe---E
Q 005235          520 AIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHPTRSIFFVS-T---K--KNIRVYDLLKQRLIKKL-ETGLKEV---S  584 (707)
Q Consensus       520 ~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~-s---d--g~I~iwDl~~~~~~~~l-~~~~~~I---~  584 (707)
                      .+.|+++.+++......     ....-+..+.|.+++..|++. .   +  ..+.++|+.++.+...+ .....+|   .
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence            56677887776531221     334567889999999844443 2   2  35777788776432222 2233454   2


Q ss_pred             EEEEc-CCCC-EEEEEECCCc--EEEEECCCCCcceEEeecCCCCEEE-EEEcCCCCE-EEEEeCC--CcEEEEeccccc
Q 005235          585 SIAIH-PAGD-NLIVGSREGK--LCWFDMDLSSKPYRVLKCHPKDITN-VAFHRSYPL-FASCSDD--CTAYVFHGMVYS  656 (707)
Q Consensus       585 sl~~s-pdg~-~L~sGs~Dg~--I~vwDl~~~~~~~~~l~~h~~~I~~-vafspdg~l-laSgs~D--g~I~Vwd~~~~~  656 (707)
                      .+.+. +++. +|.....+|.  |.+++...  ...+.+....-.|+. +.|++++.. +++|..+  +.-+||-+.   
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~--~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~---  313 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDG--GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS---  313 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTS--SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE---
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccc--cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE---
Confidence            45554 5554 4555556676  45555543  445567666667755 677887764 4455543  456666442   


Q ss_pred             CCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235          657 DLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA  696 (707)
Q Consensus       657 Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~  696 (707)
                       +....   .+..|......    -..+.|||++++++-.
T Consensus       314 -~~~~~---~~~~LT~~~~~----~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  314 -LDSGG---EPKCLTCEDGD----HYSASFSPDGKYYVDT  345 (353)
T ss_dssp             -TTETT---EEEESSTTSST----TEEEEE-TTSSEEEEE
T ss_pred             -eCCCC---CeEeccCCCCC----ceEEEECCCCCEEEEE
Confidence             22111   24556555443    2589999999987543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.02  E-value=0.0011  Score=73.72  Aligned_cols=220  Identities=14%  Similarity=0.140  Sum_probs=119.9

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .-.+..|.++|+|  .+++++.+|...|+.....                                       .....+.
T Consensus        32 ~~~p~~ls~npng--r~v~V~g~geY~iyt~~~~---------------------------------------r~k~~G~   70 (443)
T PF04053_consen   32 EIYPQSLSHNPNG--RFVLVCGDGEYEIYTALAW---------------------------------------RNKAFGS   70 (443)
T ss_dssp             SS--SEEEE-TTS--SEEEEEETTEEEEEETTTT---------------------------------------EEEEEEE
T ss_pred             CcCCeeEEECCCC--CEEEEEcCCEEEEEEccCC---------------------------------------cccccCc
Confidence            4557899999999  6777899998888772211                                       1122345


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l  576 (707)
                      ....+|++++. +|+.....   .|.|+.--+.... ..+.....+..+-.   |.+|++.+++.|.+||+.+++.+..+
T Consensus        71 g~~~vw~~~n~-yAv~~~~~---~I~I~kn~~~~~~-k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i  142 (443)
T PF04053_consen   71 GLSFVWSSRNR-YAVLESSS---TIKIYKNFKNEVV-KSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRI  142 (443)
T ss_dssp             -SEEEE-TSSE-EEEE-TTS----EEEEETTEE-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEE
T ss_pred             eeEEEEecCcc-EEEEECCC---eEEEEEcCccccc-eEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEE
Confidence            56788998554 66666555   8999633222221 23322223444333   88899888889999999999999999


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----------CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235          577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS----------SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT  646 (707)
Q Consensus       577 ~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~----------~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~  646 (707)
                      ...  .|..+.|+++|.+++..+.+ .+.|++....          ...+..+.--...|.+.+|.-+  .|+-.+.. .
T Consensus       143 ~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~  216 (443)
T PF04053_consen  143 DVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H  216 (443)
T ss_dssp             SS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E
T ss_pred             ecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e
Confidence            754  48999999999999999865 6777776532          0134444433567888888765  44444333 4


Q ss_pred             EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |+-+-        .+. ...+..+.   .+    +.=+...|....|+....|+.|..+.|
T Consensus       217 lkYl~--------~Ge-~~~i~~ld---~~----~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  217 LKYLV--------NGE-TGIIAHLD---KP----LYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             EEEEE--------TTE-EEEEEE-S---S------EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             EEEEE--------cCC-cceEEEcC---Cc----eEEEEEEccCCEEEEEECCCCEEEEEE
Confidence            54431        011 01122222   22    566667777788888888888877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.00  E-value=0.0004  Score=78.68  Aligned_cols=93  Identities=18%  Similarity=0.289  Sum_probs=66.8

Q ss_pred             eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235          395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN  473 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~  473 (707)
                      -..|+|-||- .+|++-+...-.-.+++++|+|..  .+++.+ .-|.+.+|...+.+.                     
T Consensus        38 er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~--~vLa~gwe~g~~~v~~~~~~e~---------------------   93 (1416)
T KOG3617|consen   38 ERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEE--FVLAQGWEMGVSDVQKTNTTET---------------------   93 (1416)
T ss_pred             CCCceEEEEe-cCCCCCcccccceehhhhccChHH--HHHhhccccceeEEEecCCcee---------------------
Confidence            3567888885 677755444444456789999997  455555 446677776543211                     


Q ss_pred             CCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC
Q 005235          474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS  527 (707)
Q Consensus       474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~  527 (707)
                                   ......|..+|..+.||++|..++++..-|   .|.+|...
T Consensus        94 -------------htv~~th~a~i~~l~wS~~G~~l~t~d~~g---~v~lwr~d  131 (1416)
T KOG3617|consen   94 -------------HTVVETHPAPIQGLDWSHDGTVLMTLDNPG---SVHLWRYD  131 (1416)
T ss_pred             -------------eeeccCCCCCceeEEecCCCCeEEEcCCCc---eeEEEEee
Confidence                         123457999999999999999999999877   99999876

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=6.3e-05  Score=79.75  Aligned_cols=230  Identities=13%  Similarity=0.139  Sum_probs=152.5

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEE---EEec-CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCch-----
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLR---VLEI-GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEE-----  453 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~---~l~~-~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~-----  453 (707)
                      |++-..++.++|.||.++.|--..-.-+.   .+.. .+.|.+++.+-++ ..+.+++. |..++++|+...+..     
T Consensus        16 ~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL   94 (558)
T KOG0882|consen   16 FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKL   94 (558)
T ss_pred             eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhccc
Confidence            55666799999999999999854312222   2222 6778888999998 33444355 789999998765331     


Q ss_pred             --hcccccceeeeccc----ccccCCCCcEEEEecCCccce--E-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235          454 --EQRRVKDLLHVETP----TAPDDNMASIVSWLQHDKLDG--I-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH  524 (707)
Q Consensus       454 --~~~~~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~--~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw  524 (707)
                        +.+...-+.+-+..    .+....++.+.+++.......  . ..-|..+|.++.+++.++.+++....|   .|.-|
T Consensus        95 ~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g---mVEyW  171 (558)
T KOG0882|consen   95 VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG---MVEYW  171 (558)
T ss_pred             ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc---eeEee
Confidence              11111111111100    223345677788876644322  2 346899999999999999999988777   99999


Q ss_pred             ECCC------Ccee--------eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC----------
Q 005235          525 QLSK------KLSH--------RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET----------  578 (707)
Q Consensus       525 dl~~------~~~~--------~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~----------  578 (707)
                      ....      ....        ...| +.++...++.|+|++..+..-+ |..||++++.+|++++.+..          
T Consensus       172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k  251 (558)
T KOG0882|consen  172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK  251 (558)
T ss_pred             cCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc
Confidence            8873      1000        0122 5567889999999999998877 99999999999876554321          


Q ss_pred             ----------------------C-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe
Q 005235          579 ----------------------G-LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL  619 (707)
Q Consensus       579 ----------------------~-~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l  619 (707)
                                            + ...-+.+.|...|++|+-|+.=| |+|+++.++ .+.+.+
T Consensus       252 s~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn-~v~ri~  313 (558)
T KOG0882|consen  252 SPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN-TVVRIL  313 (558)
T ss_pred             cccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC-eEEEEe
Confidence                                  0 11124456778899999988765 888998876 445444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.98  E-value=0.00035  Score=82.36  Aligned_cols=197  Identities=12%  Similarity=0.146  Sum_probs=127.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC----
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL----  567 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl----  567 (707)
                      ...|.++.|..+++.++.+...|   .|.+.|..+....  .. .....|.+++|+||...++..+ ++++.+-.-    
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G---~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~  142 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALG---DIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP  142 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCC---cEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence            36899999999999999999888   8888887776543  23 6678899999999999999888 466554321    


Q ss_pred             CCC-------------------eEEEEEeCCC---------------------CCeEEEEEcCCCCEEEEE-----ECCC
Q 005235          568 LKQ-------------------RLIKKLETGL---------------------KEVSSIAIHPAGDNLIVG-----SREG  602 (707)
Q Consensus       568 ~~~-------------------~~~~~l~~~~---------------------~~I~sl~~spdg~~L~sG-----s~Dg  602 (707)
                      -.-                   +....|.+..                     ..=++|.|--||.++|+.     ..-+
T Consensus       143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R  222 (1265)
T KOG1920|consen  143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR  222 (1265)
T ss_pred             hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence            000                   1111222111                     112458899999999983     3337


Q ss_pred             cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235          603 KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS---DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR  679 (707)
Q Consensus       603 ~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs---~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~  679 (707)
                      .|+|||-+ + .+-.+-..-.+--.+++|-|.|.++|+-.   .|+.|.+|.-.   -+..+..   .-.+.-....   
T Consensus       223 kirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN---GL~hg~f---~l~~p~de~~---  291 (1265)
T KOG1920|consen  223 KIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN---GLRHGEF---VLPFPLDEKE---  291 (1265)
T ss_pred             eEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC---Ccccccc---ccCCcccccc---
Confidence            89999987 2 21111111223345799999999998754   45679888321   1212211   1111112222   


Q ss_pred             CeeEEEEcCCCCEEEE---EeCCCcEEEEeC
Q 005235          680 GVMDCKFHPRQPWLFT---AGADSVIRLYCH  707 (707)
Q Consensus       680 gV~~l~fspdg~~L~s---~g~Dg~IrlWdl  707 (707)
                       |..++|+.++..|+.   ......|++|.+
T Consensus       292 -ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  292 -VEELAWNSNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             -hheeeecCCCCceeeeecccccceEEEEEe
Confidence             899999999999987   555556999963

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.97  E-value=0.00037  Score=77.18  Aligned_cols=167  Identities=16%  Similarity=0.182  Sum_probs=112.5

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEE--EEECCCCCchhcccccceeeecccccccCCCC
Q 005235          398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVL--ILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA  475 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~--lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~  475 (707)
                      ..+.++++.+|+....+...+.-...+|+|||...+++...++...  ++|+....                        
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~------------------------  273 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN------------------------  273 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc------------------------
Confidence            4699999999988877777777778899999965555566666544  44443321                        


Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF  555 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~  555 (707)
                                 ...+..-.+.-..-.|+|+|++++.++..++...|.+.++........++...+.. ...++|+|.+|+
T Consensus       274 -----------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~  341 (425)
T COG0823         274 -----------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIV  341 (425)
T ss_pred             -----------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEE
Confidence                       11111222223356899999999999887767788888988887653344322222 788999999998


Q ss_pred             EEe--CCe--EEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 005235          556 VST--KKN--IRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE  601 (707)
Q Consensus       556 v~s--dg~--I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D  601 (707)
                      ..+  +|.  |.++|+.++..+..+. .......-++.|+|..++..+..
T Consensus       342 ~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         342 FESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence            876  454  7777777665444443 33445667888888887765543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.94  E-value=5.5e-06  Score=93.51  Aligned_cols=189  Identities=15%  Similarity=0.100  Sum_probs=133.1

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ....+|++|+-+. ..|++++..|.|+++++.+|...                                  ....+|.+.
T Consensus      1101 ~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e----------------------------------~s~ncH~Sa 1145 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSME----------------------------------ESVNCHQSA 1145 (1516)
T ss_pred             ccceeeEEeecCC-ceEEeeeccceEEEEEccCcccc----------------------------------ccccccccc
Confidence            6788999999988 47889999999999998877332                                  124479999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK  575 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~  575 (707)
                      |+.+.=+.+|..+++.+.-. .--..+|++..-......|   ..-.++.|+....+-++|+ .....|||++++..+.+
T Consensus      1146 vT~vePs~dgs~~Ltsss~S-~PlsaLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1146 VTLVEPSVDGSTQLTSSSSS-SPLSALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             cccccccCCcceeeeecccc-CchHHHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence            99999999999888776543 2256789986532221333   2345788988766666676 57789999999877666


Q ss_pred             EeCC----CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          576 LETG----LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       576 l~~~----~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      +...    ...-++..|+|+..+++   .||  .+||++.. ..++.|...+..+ .=.|||.|.-++.-+     -|||
T Consensus      1222 ylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD 1289 (1516)
T KOG1832|consen 1222 YLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIP-EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWD 1289 (1516)
T ss_pred             hcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccH-HHHhhhhhheecc-cccccCCCceEEeec-----hhhh
Confidence            4322    12247789999987776   344  58999876 5555555443222 336999999888776     4896


Q ss_pred             ccccc
Q 005235          652 GMVYS  656 (707)
Q Consensus       652 ~~~~~  656 (707)
                      ++++.
T Consensus      1290 ~RTF~ 1294 (1516)
T KOG1832|consen 1290 MRTFK 1294 (1516)
T ss_pred             hHHHH
Confidence            66554

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.93  E-value=5e-06  Score=91.36  Aligned_cols=204  Identities=15%  Similarity=0.217  Sum_probs=132.4

Q ss_pred             CCcEEEEEEccCCCccEEEE-EeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235          417 GEAIQYVAWNPLPELPVLAV-SVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK  495 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~-s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~  495 (707)
                      ...+.|+++.-+.+..|+++ ..+|.|.+-.+......                                ......++..
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------------------------------s~E~tp~~ar  103 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------------------------------SAEVTPGYAR  103 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc--------------------------------cceecccccc
Confidence            34567777766654345544 46677777665432110                                0113457788


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCC-CccEEEEEECCCCceee---eee-c-cCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235          496 MVSSVEWHR-RGDYLSTVMPAG-ESRAIFMHQLSKKLSHR---IPF-K-LHGLPVSSVFHPTRSIFFVST-KKNIRVYDL  567 (707)
Q Consensus       496 ~V~~v~~sp-~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~---~~~-~-~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl  567 (707)
                      .+++++|++ |.+.||.|-... .+..+.|||+.+.-...   ..| . ......+++|..+.+++.+|. .+.+.++|+
T Consensus       104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdl  183 (783)
T KOG1008|consen  104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDL  183 (783)
T ss_pred             cccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhh
Confidence            899999988 556677663211 34589999998773311   122 2 344566889988888888877 789999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEE-CCCCCcceEEeecCCC----CEEEEEEcCCCC-EEEE
Q 005235          568 LKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFD-MDLSSKPYRVLKCHPK----DITNVAFHRSYP-LFAS  640 (707)
Q Consensus       568 ~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwD-l~~~~~~~~~l~~h~~----~I~~vafspdg~-llaS  640 (707)
                      +.. +..........+..+.++| .++++++-+ ||.|.+|| ...-..++..+.....    .+..++|+|..+ ++++
T Consensus       184 Rqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~  261 (783)
T KOG1008|consen  184 RQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAV  261 (783)
T ss_pred             hhh-hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhh
Confidence            833 2222222345677788999 777777665 99999999 4444455554443332    489999999655 6777


Q ss_pred             EeCC-CcEEEEeccc
Q 005235          641 CSDD-CTAYVFHGMV  654 (707)
Q Consensus       641 gs~D-g~I~Vwd~~~  654 (707)
                      ++.| ++|+++++.+
T Consensus       262 l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  262 LSRDSITIRLYDICV  276 (783)
T ss_pred             hccCcceEEEecccc
Confidence            7755 6899998764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.00071  Score=71.15  Aligned_cols=232  Identities=13%  Similarity=0.111  Sum_probs=137.1

Q ss_pred             CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      ++...|....++..++.+.+|+|.|+.+..++..+.....+++++|.-+....|+++-..|.|.|||+...+..+.....
T Consensus       198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a  277 (463)
T KOG1645|consen  198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA  277 (463)
T ss_pred             hhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh
Confidence            33334444558889999999999999999999999999999999999998778888889999999998775432211111


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEE------EEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSV------EWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v------~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~  533 (707)
                      ++                               ...+|..+      ...+.|..++....     .+..|.+.......
T Consensus       278 ~~-------------------------------t~~pv~~i~~~~~n~~f~~gglLv~~lt-----~l~f~ei~~s~~~~  321 (463)
T KOG1645|consen  278 NV-------------------------------TINPVHKIAPVQPNKIFTSGGLLVFALT-----VLQFYEIVFSAECL  321 (463)
T ss_pred             hh-------------------------------ccCcceeecccCccccccccceEEeeeh-----hhhhhhhhccccCC
Confidence            00                               01111111      23344556665554     45667665433221


Q ss_pred             ---eeeccCCCeEEEEEeCCCCEEEEEe--C------CeEEE-EECCCCeEEEEEeC-C-CCC---e---EEEEEcCCCC
Q 005235          534 ---IPFKLHGLPVSSVFHPTRSIFFVST--K------KNIRV-YDLLKQRLIKKLET-G-LKE---V---SSIAIHPAGD  593 (707)
Q Consensus       534 ---~~~~~~~~V~~v~fspd~~~l~v~s--d------g~I~i-wDl~~~~~~~~l~~-~-~~~---I---~sl~~spdg~  593 (707)
                         .++...+.+.+++.++-.+.+++..  +      +.|-. -|-.+|..+..-.. + ...   +   ..+.-.++.+
T Consensus       322 p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn  401 (463)
T KOG1645|consen  322 PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN  401 (463)
T ss_pred             CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc
Confidence               2225566777788887666655543  1      11111 12223333322111 1 000   0   1111133444


Q ss_pred             EEE-EEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC-CC-CEEEEEeCCCcEEEE
Q 005235          594 NLI-VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SY-PLFASCSDDCTAYVF  650 (707)
Q Consensus       594 ~L~-sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg-~llaSgs~Dg~I~Vw  650 (707)
                      +|+ +|...+.+.+||..+. ..++++.. ..+|..++... ++ .+|+.-. |..++||
T Consensus       402 ~iv~~gd~tn~lil~D~~s~-evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iy  458 (463)
T KOG1645|consen  402 YIVVVGDSTNELILQDPHSF-EVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIY  458 (463)
T ss_pred             EEEEecCCcceeEEeccchh-heeeeccc-CcceeecceeecCCcchhhhee-cceEEEE
Confidence            443 4555678999999877 66777764 47788777644 23 3666654 5568887

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00016  Score=76.84  Aligned_cols=207  Identities=12%  Similarity=0.047  Sum_probs=136.6

Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEE
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYD  566 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwD  566 (707)
                      -|...|+.+..+ ..+++.+++.||   .++.|--..-...  ...| .|.+.+.+++.+-++-++.+.+  |..++++|
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDG---h~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDG---HKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecch---hhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence            467777766543 568999999999   9999976542221  1233 6778888999999998888854  79999999


Q ss_pred             CCCCeEEEEEeC--CCCCeEEEEEcCCC--CEEEEE-ECCCcEEEEECCCCCcc-eEEeecCCCCEEEEEEcCCCCEEEE
Q 005235          567 LLKQRLIKKLET--GLKEVSSIAIHPAG--DNLIVG-SREGKLCWFDMDLSSKP-YRVLKCHPKDITNVAFHRSYPLFAS  640 (707)
Q Consensus       567 l~~~~~~~~l~~--~~~~I~sl~~spdg--~~L~sG-s~Dg~I~vwDl~~~~~~-~~~l~~h~~~I~~vafspdg~llaS  640 (707)
                      +..-..+.-+..  -.+.+.. ..+|..  ..|+++ -.++.+.|+|-.....+ ...-.-|..+|..+.+++.+..++|
T Consensus        83 vEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             eeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence            887544422221  1122222 222221  244444 34688999998765433 3334568999999999999999999


Q ss_pred             EeCCCcEEEEeccc-ccCCCCCCc-----ccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          641 CSDDCTAYVFHGMV-YSDLNQNPL-----IVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       641 gs~Dg~I~Vwd~~~-~~Dl~~~~~-----~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ....|.|.-|...- +.-..++-.     ..-+..+......    ..++.|+|++..+.+-+.|..||++.+
T Consensus       162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~----pts~Efsp~g~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTE----PTSFEFSPDGAQISTLNPDRKVRGFVF  230 (558)
T ss_pred             ccccceeEeecCCCcccCccccccccccccchhhcccccccC----ccceEEccccCcccccCcccEEEEEEe
Confidence            99999999996641 110011000     0011112222233    788999999999999999999999863

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=0.00052  Score=77.85  Aligned_cols=144  Identities=12%  Similarity=0.175  Sum_probs=104.5

Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccC----CCccEEEEEeCCeEEEEECCCCCchhcccccc
Q 005235          385 PVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPL----PELPVLAVSVGQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       385 p~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spd----g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      ...+.+++|||.||+|.|-.+-+++...++....++.+|+++|+    ...+++++|..| +.++.-.            
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~------------  146 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN------------  146 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh------------
Confidence            46788999999999999999999999999999999999999998    223677777777 6655411            


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccC
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLH  539 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~  539 (707)
                                         |- .......+....++|.++.|.  |+++|-++.+|    |+|+|..+++.. ..+ ...
T Consensus       147 -------------------wl-gnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G----v~vyd~~~~~~l-~~i~~p~  199 (846)
T KOG2066|consen  147 -------------------WL-GNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG----VKVYDTPTRQRL-TNIPPPS  199 (846)
T ss_pred             -------------------hh-cCccceeeecCccceEEEEec--CcEEEEecCCC----cEEEecccccee-eccCCCC
Confidence                               10 000011234567899999996  88999999876    999999988776 444 222


Q ss_pred             CC------eEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 005235          540 GL------PVSSVFHPTRSIFFVSTKKNIRVYDLLK  569 (707)
Q Consensus       540 ~~------V~~v~fspd~~~l~v~sdg~I~iwDl~~  569 (707)
                      ..      ...+.|.++ ..|+.|-..+|+|..++.
T Consensus       200 ~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  200 QSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIKK  234 (846)
T ss_pred             CCCCcccCCCceEecCC-CeEEEecCCeEEEEEEec
Confidence            32      334566654 456777777888888873

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0024  Score=73.10  Aligned_cols=155  Identities=10%  Similarity=0.114  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCC-cc-EEEEEECCCCce----ee----eeec-----cCCCeEEEEEeCCCCEEEEEe-CC
Q 005235          497 VSSVEWHRRGDYLSTVMPAGE-SR-AIFMHQLSKKLS----HR----IPFK-----LHGLPVSSVFHPTRSIFFVST-KK  560 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~-~~-~V~Iwdl~~~~~----~~----~~~~-----~~~~V~~v~fspd~~~l~v~s-dg  560 (707)
                      |..+-...+..+|++.+.|+. +. .|+||++++...    +.    +.+.     ...++.+++.|.+-..+++|- +|
T Consensus        68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG  147 (933)
T KOG2114|consen   68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNG  147 (933)
T ss_pred             hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCc
Confidence            333333334478899888874 33 799999975421    10    1111     346788999999988888887 89


Q ss_pred             eEEEEECC--C--CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC
Q 005235          561 NIRVYDLL--K--QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP  636 (707)
Q Consensus       561 ~I~iwDl~--~--~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~  636 (707)
                      .|..+.-.  .  +....-...+..+|+.+++..++..++....-..|.+|.+....-..+++..|...++|.+|++.-.
T Consensus       148 ~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~  227 (933)
T KOG2114|consen  148 LVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY  227 (933)
T ss_pred             EEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc
Confidence            99998522  1  2222223345578999999988877444444457999999843212555888889999999998776


Q ss_pred             EEEEEeCCCcEEEEec
Q 005235          637 LFASCSDDCTAYVFHG  652 (707)
Q Consensus       637 llaSgs~Dg~I~Vwd~  652 (707)
                      .|++|+. ..|.+|+.
T Consensus       228 qfIca~~-e~l~fY~s  242 (933)
T KOG2114|consen  228 QFICAGS-EFLYFYDS  242 (933)
T ss_pred             cEEEecC-ceEEEEcC
Confidence            5555543 45888854

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.78  E-value=0.036  Score=55.64  Aligned_cols=293  Identities=14%  Similarity=0.062  Sum_probs=145.7

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc-cce--e
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV-KDL--L  462 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~-~~v--~  462 (707)
                      +...+++.||..+.+.--|..+|.....-.....|.+-+.--..  .++.++..+.+++.+..+|+....... +.+  .
T Consensus        21 dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgd--fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~   98 (354)
T KOG4649|consen   21 DSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGD--FVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR   98 (354)
T ss_pred             CCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECC--EEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence            33568999999999999999999988665556666555544333  588899999999999999854211110 000  0


Q ss_pred             -eeccc---ccccCCCCcEEEEecCCccceEEeccCCCe-EEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee
Q 005235          463 -HVETP---TAPDDNMASIVSWLQHDKLDGIRLRHFKMV-SSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF  536 (707)
Q Consensus       463 -~~~~~---~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V-~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~  536 (707)
                       .+.+.   +..++.|++....|..+..........+.+ .+-+..+ ++. |..+...|   .|.--.......  ..|
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G---~vlavt~~~~~~--~~~  172 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAG---AVLAVTKNPYSS--TEF  172 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccc---eEEEEccCCCCc--cee
Confidence             11111   455666777666665544332222222222 1223333 333 22233333   333333332221  222


Q ss_pred             ---ccCCCeEEE-EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEE-EEE-cCCCCEEEEEECCCcEEEEEC
Q 005235          537 ---KLHGLPVSS-VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSS-IAI-HPAGDNLIVGSREGKLCWFDM  609 (707)
Q Consensus       537 ---~~~~~V~~v-~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~s-l~~-spdg~~L~sGs~Dg~I~vwDl  609 (707)
                         ...+++.+- .+  -++.+..++ ||.+.-++ ..|+.+..+... ++|.. -+- +|.-+.|..+..+..+..-.+
T Consensus       173 w~~~~~~PiF~splc--v~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~-GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~  248 (354)
T KOG4649|consen  173 WAATRFGPIFASPLC--VGSSVIITTVDGVLTSFD-ESGRQVWRPATK-GPIFMEPCESRPSCQQISLENENCFCAPLPI  248 (354)
T ss_pred             hhhhcCCccccCcee--ccceEEEEEeccEEEEEc-CCCcEEEeecCC-CceecccccCCCcceEEEEecCCeEEEeccc
Confidence               112232211 00  133444455 88888888 567777765443 34321 112 255556666655544333222


Q ss_pred             CCCCcceEEeecCCCCEEEEEEcC-----------C-CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCC
Q 005235          610 DLSSKPYRVLKCHPKDITNVAFHR-----------S-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSN  677 (707)
Q Consensus       610 ~~~~~~~~~l~~h~~~I~~vafsp-----------d-g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~  677 (707)
                      . + .++-.  ...+....+..+|           . .++|..++.||.+.|.-.+        +.   +.....|.+. 
T Consensus       249 ~-g-hL~w~--~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~--------~s---l~~~~s~~g~-  312 (354)
T KOG4649|consen  249 A-G-HLLWA--TQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTS--------KS---LAEISSNGGE-  312 (354)
T ss_pred             c-c-eEEEE--ecCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEec--------cc---ccccccCCCc-
Confidence            2 1 11111  1111122222222           1 2467788899988877332        11   2222223222 


Q ss_pred             CCCeeEEE-----Ec-C---CCCEEEEEeCCCcEEEEeC
Q 005235          678 GRGVMDCK-----FH-P---RQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       678 ~~gV~~l~-----fs-p---dg~~L~s~g~Dg~IrlWdl  707 (707)
                      -+.+..+.     |+ |   +| .|+.|+.|..|+-|||
T Consensus       313 lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cldl  350 (354)
T KOG4649|consen  313 LQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLDL  350 (354)
T ss_pred             cceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEec
Confidence            00022222     21 2   33 5788889999999986

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.77  E-value=0.0064  Score=65.16  Aligned_cols=189  Identities=15%  Similarity=0.203  Sum_probs=115.4

Q ss_pred             CCEEEEEeCC--C----Cc-cEEEEEECCCC-----ceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe
Q 005235          506 GDYLSTVMPA--G----ES-RAIFMHQLSKK-----LSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR  571 (707)
Q Consensus       506 g~~lat~s~d--g----~~-~~V~Iwdl~~~-----~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~  571 (707)
                      -.+|++|..-  +    .. +.|.++++...     +.. ...  ...++|++++--  +..|+++.++.|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~-~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK-LIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE-EEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEE-EEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcc
Confidence            4567766531  0    12 68999999884     222 222  668899998876  445888889999999998877


Q ss_pred             -EEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235          572 -LIKKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK--CHPKDITNVAFHRSYPLFASCSDDCTA  647 (707)
Q Consensus       572 -~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h~~~I~~vafspdg~llaSgs~Dg~I  647 (707)
                       +...-.. ....+.++...  +++|++|..-..|.++..+.....+..+.  .....++++.|-+++..++.+..+|.|
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence             5544332 22356666665  67999999999998886654323233332  234568899998777799999999999


Q ss_pred             EEEecccccC-CCCCC-cccceEEeeCCCCCCCCCeeEE---EEcCC--C------CEEEEEeCCCcEEE
Q 005235          648 YVFHGMVYSD-LNQNP-LIVPLEILRGHTSSNGRGVMDC---KFHPR--Q------PWLFTAGADSVIRL  704 (707)
Q Consensus       648 ~Vwd~~~~~D-l~~~~-~~~pl~~l~gh~~~~~~gV~~l---~fspd--g------~~L~s~g~Dg~Irl  704 (707)
                      .++....... ...+. ...++..+.-+..     |+++   .+.|.  +      +.++.++.+|.|.+
T Consensus       197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~-----v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  197 FVLRYNPEIPNSRDGDPKLERISSFHLGDI-----VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEEEE-SS-SSTTTTTTBEEEEEEEE-SS------EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             EEEEECCCCcccccccccceeEEEEECCCc-----cceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            9997642111 11122 3333333333322     7776   54552  2      25888889998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.68  E-value=4.6e-05  Score=86.32  Aligned_cols=152  Identities=10%  Similarity=0.036  Sum_probs=115.7

Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe---CCeEEEE
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST---KKNIRVY  565 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s---dg~I~iw  565 (707)
                      +..|....+|++|+.+.++|++|+..|   .|+++++.++... ... .|.+.|+-+.-+-+|..+++++   .--..+|
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~G---eik~~nv~sG~~e-~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAG---EIKIFNVSSGSME-ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccc---eEEEEEccCcccc-ccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            456788899999999999999999988   9999999999887 666 9999999999999998877755   3467899


Q ss_pred             ECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEE
Q 005235          566 DLLK-QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASC  641 (707)
Q Consensus       566 Dl~~-~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSg  641 (707)
                      ++.. +...+++...    .++.|+.....-+.|+......+||+.++..+..-|.+-   ...=+.+.|+|+..++.  
T Consensus      1173 ~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred             ccccccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence            9864 4555666533    578888776666778777789999999985433323321   22236788999988776  


Q ss_pred             eCCCcEEEEeccc
Q 005235          642 SDDCTAYVFHGMV  654 (707)
Q Consensus       642 s~Dg~I~Vwd~~~  654 (707)
                       .||  .+||++.
T Consensus      1247 -ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRI 1256 (1516)
T ss_pred             -eCc--eeeeecc
Confidence             455  4787653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.026  Score=59.85  Aligned_cols=184  Identities=16%  Similarity=0.164  Sum_probs=108.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee------ccCCCeEEEEEeCCCCEEEEEeC--------
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF------KLHGLPVSSVFHPTRSIFFVSTK--------  559 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~------~~~~~V~~v~fspd~~~l~v~sd--------  559 (707)
                      .+.+.++..-..+..|+++..     .+.+++...+... ..+      ......+.+...|+|.+.+....        
T Consensus        65 p~~~~~~~~~d~~g~Lv~~~~-----g~~~~~~~~~~~~-t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~  138 (307)
T COG3386          65 PGGFSSGALIDAGGRLIACEH-----GVRLLDPDTGGKI-TLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSE  138 (307)
T ss_pred             CCCcccceeecCCCeEEEEcc-----ccEEEeccCCcee-EEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccc
Confidence            344455554445555555554     4667776555442 222      12245667888999987765222        


Q ss_pred             ----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCC-----CC-cceEEeecCCCCEEE
Q 005235          560 ----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDL-----SS-KPYRVLKCHPKDITN  628 (707)
Q Consensus       560 ----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~-----~~-~~~~~l~~h~~~I~~  628 (707)
                          |.|+.+|. .+..++.+..+-..-+.|+|||||+.|..... .+.|.-|+++.     .. .....+....+.--.
T Consensus       139 ~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG  217 (307)
T COG3386         139 ERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG  217 (307)
T ss_pred             cCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc
Confidence                44555554 45556555554555688999999987777654 47788887762     11 112222223455556


Q ss_pred             EEEcCCCCEEEEEeCCC-cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc-CCCCEEEEEeC
Q 005235          629 VAFHRSYPLFASCSDDC-TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH-PRQPWLFTAGA  698 (707)
Q Consensus       629 vafspdg~llaSgs~Dg-~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs-pdg~~L~s~g~  698 (707)
                      ++...+|.+.+++-..| .|.+|+      .. +.+   +..+.-....    +++++|- |+.+.|+..++
T Consensus       218 ~~vDadG~lw~~a~~~g~~v~~~~------pd-G~l---~~~i~lP~~~----~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         218 MAVDADGNLWVAAVWGGGRVVRFN------PD-GKL---LGEIKLPVKR----PTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             eEEeCCCCEEEecccCCceEEEEC------CC-CcE---EEEEECCCCC----CccceEeCCCcCEEEEEec
Confidence            77777888776555554 888883      22 332   5555555444    8888884 45566654443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.57  E-value=0.023  Score=61.20  Aligned_cols=264  Identities=12%  Similarity=0.071  Sum_probs=126.6

Q ss_pred             cCCCC-cEEEEEeCCCc--EEEEeCCCCeEEEEEecC-CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-hcccc
Q 005235          384 YPVAC-YLEYKGSTDGT--VRIWEVESGRCLRVLEIG-EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-EQRRV  458 (707)
Q Consensus       384 fp~~~-~~l~sgs~Dgt--VrIWd~~tg~~l~~l~~~-~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-~~~~~  458 (707)
                      |..++ .+|+.+..||.  +.+-|+.+++..+--.+. .......++|+. ..++-...+..|.-.|+.+.+.. +....
T Consensus        43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            44444 56777766765  555578888876655542 223356677877 35666666778888888886541 11111


Q ss_pred             cceee-eccc-----------------------------ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCE
Q 005235          459 KDLLH-VETP-----------------------------TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDY  508 (707)
Q Consensus       459 ~~v~~-~~~~-----------------------------~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~  508 (707)
                      ..... ..+.                             +..+.....|..-++.++....+..-...+..+.|+|....
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~  201 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT  201 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence            11110 0000                             11112223344445555555555566677888999997766


Q ss_pred             EEEEeCCCCccE--EEEEECCCCceeeeee-ccC-C-CeEEEEEeCCCCEEEE-Ee-----CCeEEEEECCCCeEEEEEe
Q 005235          509 LSTVMPAGESRA--IFMHQLSKKLSHRIPF-KLH-G-LPVSSVFHPTRSIFFV-ST-----KKNIRVYDLLKQRLIKKLE  577 (707)
Q Consensus       509 lat~s~dg~~~~--V~Iwdl~~~~~~~~~~-~~~-~-~V~~v~fspd~~~l~v-~s-----dg~I~iwDl~~~~~~~~l~  577 (707)
                      +++-|..|.-..  -+||-+.+......++ .+. + .+..=-|.|+|..|.. +.     +..|.-+|+.+++......
T Consensus       202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~  281 (386)
T PF14583_consen  202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME  281 (386)
T ss_dssp             EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE
T ss_pred             EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe
Confidence            666665553222  2677776554443455 222 2 2333458999987665 22     3468888998875543222


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCC----------------cEEEEECCCCCcceEEeecCCC-----------CEEEEE
Q 005235          578 TGLKEVSSIAIHPAGDNLIVGSREG----------------KLCWFDMDLSSKPYRVLKCHPK-----------DITNVA  630 (707)
Q Consensus       578 ~~~~~I~sl~~spdg~~L~sGs~Dg----------------~I~vwDl~~~~~~~~~l~~h~~-----------~I~~va  630 (707)
                      .  .+...+-.+++|++++-=+.|.                -|+++++..+ . ...+..|..           .=-.+.
T Consensus       282 ~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~-~-~~~l~~h~~sw~v~~~~~q~~hPhp~  357 (386)
T PF14583_consen  282 M--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG-R-FRKLARHDTSWKVLDGDRQVTHPHPS  357 (386)
T ss_dssp             E---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTT-E-EEEEEE-------BTTBSSTT----E
T ss_pred             C--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC-c-eeeeeeccCcceeecCCCccCCCCCc
Confidence            2  2455677789998887544432                4667888754 2 222322321           124679


Q ss_pred             EcCCCCEEE-EEeCCCcEEEEec
Q 005235          631 FHRSYPLFA-SCSDDCTAYVFHG  652 (707)
Q Consensus       631 fspdg~lla-Sgs~Dg~I~Vwd~  652 (707)
                      |+||+++++ ++...|...||=+
T Consensus       358 FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  358 FSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             E-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             cCCCCCEEEEECCCCCCccEEEE
Confidence            999999554 5557888888843

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.57  E-value=0.00028  Score=79.90  Aligned_cols=119  Identities=13%  Similarity=0.226  Sum_probs=92.1

Q ss_pred             ccCCCeEEEEEeCCCCEEEEEe-----CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235          537 KLHGLPVSSVFHPTRSIFFVST-----KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~s-----dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~  611 (707)
                      ...+..+-..|||..++|++++     .|.|.||- .+|++-....-. -.+++++|||..-.|+.|-.-|.+.+|...+
T Consensus        13 Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~   90 (1416)
T KOG3617|consen   13 DSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWEMGVSDVQKTNT   90 (1416)
T ss_pred             cccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc-eehhhhccChHHHHHhhccccceeEEEecCC
Confidence            3444445568999999999986     48899984 566654333222 2367899999998999999999999999876


Q ss_pred             CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC
Q 005235          612 SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL  658 (707)
Q Consensus       612 ~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl  658 (707)
                      . ..-.....|..+|..+.||++|..|+++..-|.|.+|..++.+.+
T Consensus        91 ~-e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~  136 (1416)
T KOG3617|consen   91 T-ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI  136 (1416)
T ss_pred             c-eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence            5 333445579999999999999999999999999999987654433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.53  E-value=3.2e-05  Score=85.17  Aligned_cols=200  Identities=15%  Similarity=0.165  Sum_probs=127.9

Q ss_pred             CCCeEEEEEcCCC--CEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCC-CCEEEEEe-----CCeEE
Q 005235          494 FKMVSSVEWHRRG--DYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPT-RSIFFVST-----KKNIR  563 (707)
Q Consensus       494 ~~~V~~v~~sp~g--~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd-~~~l~v~s-----dg~I~  563 (707)
                      ...+.|+++.-+.  ..+++|..+|   .|.+-.+....-....+  ++...+++++|++- ..+|++|-     |-.+.
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG---~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~  132 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATG---NISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK  132 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccC---ceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence            4567788776544  3677777777   77777765433221333  77788999999984 55666663     46799


Q ss_pred             EEECCCC--eEE--EEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC-CCCE
Q 005235          564 VYDLLKQ--RLI--KKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPL  637 (707)
Q Consensus       564 iwDl~~~--~~~--~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg~l  637 (707)
                      |||+.++  .+.  ..|.+ -.....+++|-.+.++|++|...+.+.++|++...  .....-.+..+..+...| .+.+
T Consensus       133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNY  210 (783)
T ss_pred             ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCc
Confidence            9999875  111  12222 22335688888888999999999999999998432  222222345677788888 6778


Q ss_pred             EEEEeCCCcEEEEec-ccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeC-CCcEEEEeC
Q 005235          638 FASCSDDCTAYVFHG-MVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGA-DSVIRLYCH  707 (707)
Q Consensus       638 laSgs~Dg~I~Vwd~-~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~-Dg~IrlWdl  707 (707)
                      +++-+ ||.|.+||. +..    .+    |+..+.......-..+..++|+|..+ .|++... .++|+++++
T Consensus       211 ~cs~~-dg~iAiwD~~rni----en----pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRNI----EN----PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             eeccc-cCceeeccchhhh----cc----HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            87776 999999962 211    12    22222222211111389999999765 3455554 467888874

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.52  E-value=0.0073  Score=67.98  Aligned_cols=156  Identities=14%  Similarity=0.093  Sum_probs=98.4

Q ss_pred             CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEe-c-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc
Q 005235          380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLE-I-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR  457 (707)
Q Consensus       380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~-~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~  457 (707)
                      .+..+..+..+++.|+.-|.|.+|+-.+|.....-. + .+.+..+..+++. ..+++++..|.|.++.+....+..   
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~---  112 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRD---  112 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCc---
Confidence            344566777899999999999999977665443222 1 5566677788887 355566677788887765532110   


Q ss_pred             ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce---eee
Q 005235          458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS---HRI  534 (707)
Q Consensus       458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~---~~~  534 (707)
                        .                 ....      ..-..|...|++++|++++..|.+|...|   .|....++....   ...
T Consensus       113 --~-----------------~~~t------~~d~~~~~rVTal~Ws~~~~k~ysGD~~G---kv~~~~L~s~~~~~~~~q  164 (726)
T KOG3621|consen  113 --L-----------------DYVT------PCDKSHKCRVTALEWSKNGMKLYSGDSQG---KVVLTELDSRQAFLSKSQ  164 (726)
T ss_pred             --c-----------------eeec------cccccCCceEEEEEecccccEEeecCCCc---eEEEEEechhhhhccccc
Confidence              0                 0000      00124788999999999999999999888   999888887311   002


Q ss_pred             ee-ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 005235          535 PF-KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK  569 (707)
Q Consensus       535 ~~-~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~  569 (707)
                      ++ ...+.|..+...  ..+|++++--...++++..
T Consensus       165 ~il~~ds~IVQlD~~--q~~LLVStl~r~~Lc~tE~  198 (726)
T KOG3621|consen  165 EILSEDSEIVQLDYL--QSYLLVSTLTRCILCQTEA  198 (726)
T ss_pred             eeeccCcceEEeecc--cceehHhhhhhhheeecch
Confidence            22 445566555544  3456666533334555543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.50  E-value=0.15  Score=53.09  Aligned_cols=240  Identities=15%  Similarity=0.124  Sum_probs=134.2

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      .+..++.|..+| |.++++........+.....|..+...|+-  .++.+-.|+.+.++++........... ..     
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~--~~llvLsd~~l~~~~L~~l~~~~~~~~-~~-----   76 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPEL--NLLLVLSDGQLYVYDLDSLEPVSTSAP-LA-----   76 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEeccc--CEEEEEcCCccEEEEchhhcccccccc-cc-----
Confidence            346888899999 999998433333333333449999999987  355555679999999876433211000 00     


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEE---EcCCCCEEEEEeCCCCccEEEEEECCCC-----ceeeeeecc
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVE---WHRRGDYLSTVMPAGESRAIFMHQLSKK-----LSHRIPFKL  538 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~---~sp~g~~lat~s~dg~~~~V~Iwdl~~~-----~~~~~~~~~  538 (707)
                                    ................+...+   -...+.+|+++.. .   .|.||.+...     ... ..+..
T Consensus        77 --------------~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k---~i~i~~~~~~~~~f~~~~-ke~~l  137 (275)
T PF00780_consen   77 --------------FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-K---KILIYEWNDPRNSFSKLL-KEISL  137 (275)
T ss_pred             --------------ccccccccccccccCCeeEEeeccccccceEEEEEEC-C---EEEEEEEECCccccccee-EEEEc
Confidence                          000000000112222333333   1223344554443 2   8888887663     222 55566


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCC------------CCCeEEEEEcCCCCEEEEEECCCcEEE
Q 005235          539 HGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETG------------LKEVSSIAIHPAGDNLIVGSREGKLCW  606 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~------------~~~I~sl~~spdg~~L~sGs~Dg~I~v  606 (707)
                      ...+.+++|.  +..|++|..+...+.|+.++.....+...            ..++..+.+. ++.+|++  .+..-.+
T Consensus       138 p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~--~~~~g~f  212 (275)
T PF00780_consen  138 PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC--YDNIGVF  212 (275)
T ss_pred             CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE--ecceEEE
Confidence            7889999999  66888888888999999977554333211            1234444443 4566664  3444444


Q ss_pred             EECCCCCcce--EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC
Q 005235          607 FDMDLSSKPY--RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT  674 (707)
Q Consensus       607 wDl~~~~~~~--~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~  674 (707)
                      .|.. | .+.  ..+.- .....++++  ..++|+..+.+ .|.||+      +.++.+   ++++.+..
T Consensus       213 v~~~-G-~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~~-~iEV~~------~~~~~l---vQ~i~~~~  267 (275)
T PF00780_consen  213 VNKN-G-EPSRKSTIQW-SSAPQSVAY--SSPYLIAFSSN-SIEVRS------LETGEL---VQTIPLPN  267 (275)
T ss_pred             EcCC-C-CcCcccEEEc-CCchhEEEE--ECCEEEEECCC-EEEEEE------CcCCcE---EEEEECCC
Confidence            4553 3 222  23332 235566776  45677776664 499994      444444   55555443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.50  E-value=0.017  Score=62.15  Aligned_cols=289  Identities=13%  Similarity=0.133  Sum_probs=124.1

Q ss_pred             eCCCCeEEEEEecCCc-E-----EEEEEccCCCccEEEEEeCC--eEEEEECCCCCch-hccc-cc----ceeeeccc-c
Q 005235          404 EVESGRCLRVLEIGEA-I-----QYVAWNPLPELPVLAVSVGQ--DVLILNTGLGNEE-EQRR-VK----DLLHVETP-T  468 (707)
Q Consensus       404 d~~tg~~l~~l~~~~~-V-----~~v~~spdg~~~lla~s~d~--~V~lwd~~~~~~~-~~~~-~~----~v~~~~~~-~  468 (707)
                      |..||..+..+..... .     +.=+|.++|...|+++..++  .+.+.|+.++... +... ..    .+++..-. +
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            5567777666655222 1     12357889965555555555  5667777766431 1110 01    11110000 1


Q ss_pred             cccCCCCcEEEEecCCccceE-EeccCCCeEEEEEc--CCCCEEEEEeCCC-------------------CccEEEEEEC
Q 005235          469 APDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWH--RRGDYLSTVMPAG-------------------ESRAIFMHQL  526 (707)
Q Consensus       469 ~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~s--p~g~~lat~s~dg-------------------~~~~V~Iwdl  526 (707)
                      .-......+...++.+.+... ..-....+-...|.  .++..++..-...                   ....|..-|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            111122344445555555433 22334444445664  3555554432111                   2346777788


Q ss_pred             CCCceeeeeeccCCCeEEEEEeCCCCEEEE-EeC----C-eEEEEECCC-CeEEEEEeCCC--CCeEEEEEcCCCCEEEE
Q 005235          527 SKKLSHRIPFKLHGLPVSSVFHPTRSIFFV-STK----K-NIRVYDLLK-QRLIKKLETGL--KEVSSIAIHPAGDNLIV  597 (707)
Q Consensus       527 ~~~~~~~~~~~~~~~V~~v~fspd~~~l~v-~sd----g-~I~iwDl~~-~~~~~~l~~~~--~~I~sl~~spdg~~L~s  597 (707)
                      .+++.. ..+.....+..+.|+|..+.+++ |..    . .-|||-+.+ +...+.+..+.  ..+..=-|.|+|..|.-
T Consensus       176 ~tG~~~-~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  176 KTGERK-VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             TT--EE-EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             CCCcee-EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence            887764 44577888999999998776665 432    2 236676554 33344443332  22445578999987765


Q ss_pred             EEC-----CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC----------------cEEEEeccccc
Q 005235          598 GSR-----EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC----------------TAYVFHGMVYS  656 (707)
Q Consensus       598 Gs~-----Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg----------------~I~Vwd~~~~~  656 (707)
                      -+.     +..|.-+|+.++.. ....  ...+...+--+++|.+||-=+.|.                .|+|+++.   
T Consensus       255 ~~~~~~~~~~~i~~~d~~t~~~-~~~~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~---  328 (386)
T PF14583_consen  255 DSYTPGGQDFWIAGYDPDTGER-RRLM--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE---  328 (386)
T ss_dssp             EEEETTT--EEEEEE-TTT--E-EEEE--EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT---
T ss_pred             EeecCCCCceEEEeeCCCCCCc-eEEE--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc---
Confidence            332     44577778887632 2212  222445666688999987544432                34445332   


Q ss_pred             CCCCCCcccc------eEEeeCCCCCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEE
Q 005235          657 DLNQNPLIVP------LEILRGHTSSNGRGVMDCKFHPRQPWL-FTAGADSVIRLY  705 (707)
Q Consensus       657 Dl~~~~~~~p------l~~l~gh~~~~~~gV~~l~fspdg~~L-~s~g~Dg~IrlW  705 (707)
                         .......      ...+.++...   -=-.+.|+|||++| +++...|...||
T Consensus       329 ---~~~~~~l~~h~~sw~v~~~~~q~---~hPhp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  329 ---AGRFRKLARHDTSWKVLDGDRQV---THPHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             ---TTEEEEEEE-------BTTBSST---T----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             ---cCceeeeeeccCcceeecCCCcc---CCCCCccCCCCCEEEEECCCCCCccEE
Confidence               2211000      0112222211   01457899999987 556677777666

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.50  E-value=0.095  Score=59.66  Aligned_cols=254  Identities=11%  Similarity=0.045  Sum_probs=139.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCc--------E-EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEA--------I-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~--------V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      ..+|.++.++.|.-.|..+|+.+..+.....        + ..++...++  .+++++.++.|.-+|..++...-.....
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR--KVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC--eEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            4678888899999999999999887765222        0 011122213  6888888999999999988654322211


Q ss_pred             c-------eeee-cc--c-cccc---------CCCCcEEEEecCCccceEEecc--C-------------------CCe-
Q 005235          460 D-------LLHV-ET--P-TAPD---------DNMASIVSWLQHDKLDGIRLRH--F-------------------KMV-  497 (707)
Q Consensus       460 ~-------v~~~-~~--~-~~~~---------~~d~~i~iW~~~~~~~~~~~~h--~-------------------~~V-  497 (707)
                      .       +.+. ..  . +..+         ..++.+..++..++...-....  .                   ..| 
T Consensus       140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw  219 (488)
T cd00216         140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW  219 (488)
T ss_pred             CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence            1       0000 00  0 2222         2346667677665544321111  0                   001 


Q ss_pred             EEEEEcCCCCEEEEEeCCC---------------CccEEEEEECCCCceeeeee--ccC-C----CeEEEEEe----CCC
Q 005235          498 SSVEWHRRGDYLSTVMPAG---------------ESRAIFMHQLSKKLSHRIPF--KLH-G----LPVSSVFH----PTR  551 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg---------------~~~~V~Iwdl~~~~~~~~~~--~~~-~----~V~~v~fs----pd~  551 (707)
                      ...++.+.+..++.++.++               ..+.|.-.|+.+++.. -.+  ... .    ......+.    -++
T Consensus       220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~-W~~~~~~~~~~~~~~~s~p~~~~~~~~~g  298 (488)
T cd00216         220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK-WFYQTTPHDLWDYDGPNQPSLADIKPKDG  298 (488)
T ss_pred             CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE-EEeeCCCCCCcccccCCCCeEEeccccCC
Confidence            1234444566676666443               1236888888888776 444  111 0    11111111    123


Q ss_pred             C---EEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE------------------ECCCcEEEEEC
Q 005235          552 S---IFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG------------------SREGKLCWFDM  609 (707)
Q Consensus       552 ~---~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG------------------s~Dg~I~vwDl  609 (707)
                      .   .+++++ +|.+..+|..+|+.+......   ...++.+|  ..++++                  ..+|.|.-+|+
T Consensus       299 ~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~  373 (488)
T cd00216         299 KPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP  373 (488)
T ss_pred             CeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence            2   466666 899999999999988776532   11234444  333332                  24577888888


Q ss_pred             CCCCcceEEeecC--C------CCE--EEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          610 DLSSKPYRVLKCH--P------KDI--TNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       610 ~~~~~~~~~l~~h--~------~~I--~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .++....+ ....  .      .+.  ..++  -.+.+|+.++.||.|+.+|..
T Consensus       374 ~tG~~~W~-~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~  424 (488)
T cd00216         374 KTGKVVWE-KREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDAT  424 (488)
T ss_pred             CCCcEeeE-eeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECC
Confidence            88743322 2211  0      111  1122  245678888899999999554

The alignment model contains an 8-bladed beta-propeller.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.48  E-value=0.02  Score=63.00  Aligned_cols=264  Identities=11%  Similarity=0.075  Sum_probs=126.7

Q ss_pred             cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc-ccccCCCCcE-EEEecCC-----ccc--eE
Q 005235          419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP-TAPDDNMASI-VSWLQHD-----KLD--GI  489 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~-~~~~~~d~~i-~iW~~~~-----~~~--~~  489 (707)
                      .|++|.|+++. ..++++...|.|.||.+......-......-....+. +......+.+ -+-++..     +..  ..
T Consensus         3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            58899999986 4788999999999998755422110000000000000 0000001111 1111111     111  11


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee-ee-c------cCCCeEEEEEeC-----CC---CE
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI-PF-K------LHGLPVSSVFHP-----TR---SI  553 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~-~~-~------~~~~V~~v~fsp-----d~---~~  553 (707)
                      +....++|++++.| +=.++|.|..+|   .+.|.|++....... .+ .      ....|+++.|.-     |+   ..
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G---~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESG---SLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTS---EEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCC---cEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            33457899999987 555899999888   999999977665421 11 2      234677888862     22   57


Q ss_pred             EEEEe-CCeEEEEECCC---Ce----EEEEEeCCCCCeEEEE-EcCC-----------------C---CEEEEEECCCcE
Q 005235          554 FFVST-KKNIRVYDLLK---QR----LIKKLETGLKEVSSIA-IHPA-----------------G---DNLIVGSREGKL  604 (707)
Q Consensus       554 l~v~s-dg~I~iwDl~~---~~----~~~~l~~~~~~I~sl~-~spd-----------------g---~~L~sGs~Dg~I  604 (707)
                      +++|+ .|.+.+|.+.-   +.    .......+.+.|..|. |+.+                 |   ..+++...+..+
T Consensus       158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i  237 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI  237 (395)
T ss_dssp             EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence            88888 69999998751   21    2222223445554443 3211                 1   124444456789


Q ss_pred             EEEECCCCCcceEEeecCCCCEEEEEEc-----CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235          605 CWFDMDLSSKPYRVLKCHPKDITNVAFH-----RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR  679 (707)
Q Consensus       605 ~vwDl~~~~~~~~~l~~h~~~I~~vafs-----pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~  679 (707)
                      +++.+.+.....+.+ .......++.+-     ..+..|++-..+|.|++|.+-      .-.   ++..+.-....+..
T Consensus       238 rv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP------~Lk---ei~~~~l~~~~d~~  307 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP------SLK---EIKSVSLPPPLDSR  307 (395)
T ss_dssp             EEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT------T-----EEEEEE-SS---HH
T ss_pred             EEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC------Cch---HhhcccCCCccccc
Confidence            999998764444444 222233444552     356688888999999999432      222   23444333221222


Q ss_pred             CeeEEEEcCCCCEEEEEe
Q 005235          680 GVMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       680 gV~~l~fspdg~~L~s~g  697 (707)
                      .+...+++++|..++-.|
T Consensus       308 ~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  308 RLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             HHTT-EE-TTS-EEEE-S
T ss_pred             cccccEECCCCCEEEEeC
Confidence            356677888888766554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.48  E-value=0.11  Score=57.69  Aligned_cols=195  Identities=13%  Similarity=0.153  Sum_probs=100.5

Q ss_pred             cEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcE
Q 005235          399 TVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASI  477 (707)
Q Consensus       399 tVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i  477 (707)
                      .|+||+. .|+.+.++.- .+.|.++.|+.+.  .|++...+|.++++|+.... .                        
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~------------------------  113 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-Q------------------------  113 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-e------------------------
Confidence            4889984 5777777665 5899999999977  69999999999999975321 0                        


Q ss_pred             EEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE-ECCCCcee----eeee---cc--CCCeEE-EE
Q 005235          478 VSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH-QLSKKLSH----RIPF---KL--HGLPVS-SV  546 (707)
Q Consensus       478 ~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw-dl~~~~~~----~~~~---~~--~~~V~~-v~  546 (707)
                        +.+... .....-....+.+..+..+|-.+++  .++   .+.+. +.......    ..+.   ..  ...+.. ..
T Consensus       114 --fsl~~~-i~~~~v~e~~i~~~~~~~~GivvLt--~~~---~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~  185 (410)
T PF04841_consen  114 --FSLGEE-IEEEKVLECRIFAIWFYKNGIVVLT--GNN---RFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL  185 (410)
T ss_pred             --echhhh-ccccCcccccccccccCCCCEEEEC--CCC---eEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence              000000 0000001111222222223422222  222   22222 22211000    0000   00  001111 23


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-CC
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-PK  624 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-~~  624 (707)
                      ++.+....+... ++.+.+.+-....   .+. ..+++..|++||+|++||.-..+|.+.+...+.. +.+..+... ..
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~---~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~  260 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFK---QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKS  260 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEccccc---ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCC
Confidence            444444433333 5556644432211   122 2367999999999999999999999999987765 445444433 23


Q ss_pred             CEEEEEEcCC
Q 005235          625 DITNVAFHRS  634 (707)
Q Consensus       625 ~I~~vafspd  634 (707)
                      ....+.|.-+
T Consensus       261 ~p~~~~WCG~  270 (410)
T PF04841_consen  261 PPKQMAWCGN  270 (410)
T ss_pred             CCcEEEEECC
Confidence            4455555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.12  Score=56.77  Aligned_cols=250  Identities=12%  Similarity=0.099  Sum_probs=153.6

Q ss_pred             EEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc--ceeeeccc------cccc
Q 005235          400 VRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK--DLLHVETP------TAPD  471 (707)
Q Consensus       400 VrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~--~v~~~~~~------~~~~  471 (707)
                      +.+++..+.+....+........+...+++....++-.....+...+.............  .-..+...      .+..
T Consensus        13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~   92 (381)
T COG3391          13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT   92 (381)
T ss_pred             eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec
Confidence            677777777666666666677888888888533444434444555444311110000000  00000000      2233


Q ss_pred             CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC
Q 005235          472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT  550 (707)
Q Consensus       472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd  550 (707)
                      .....+.+.+...........-......+++++++..+.++......+.+.+.|-.+.... ... ....+ ..+++.|+
T Consensus        93 ~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~-~~~~vG~~P-~~~a~~p~  170 (381)
T COG3391          93 GDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT-ATIPVGNTP-TGVAVDPD  170 (381)
T ss_pred             CCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE-EEEecCCCc-ceEEECCC
Confidence            3456777777554444333333337788999999988877766322458999998888776 444 22233 89999999


Q ss_pred             CCEEEEEe--CCeEEEEECCCCeEEE-E----EeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEE-e
Q 005235          551 RSIFFVST--KKNIRVYDLLKQRLIK-K----LETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRV-L  619 (707)
Q Consensus       551 ~~~l~v~s--dg~I~iwDl~~~~~~~-~----l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~-l  619 (707)
                      +..++++.  ++.|.+.|........ .    +..+ .....+.++|+|.++.+....   +.+...|..++ ..... +
T Consensus       171 g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~  248 (381)
T COG3391         171 GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDL  248 (381)
T ss_pred             CCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEecc
Confidence            99888877  7999999987765553 1    2112 334678999999977665443   58999998876 32322 1


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecc
Q 005235          620 KCHPKDITNVAFHRSYPLFASCS-DDCTAYVFHGM  653 (707)
Q Consensus       620 ~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~  653 (707)
                      ..-...-..++++|+|..+.+.. ..+.+.+-|.+
T Consensus       249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence            21111456789999999887774 44788888554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.46  E-value=0.0032  Score=70.07  Aligned_cols=182  Identities=15%  Similarity=0.229  Sum_probs=94.2

Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR  571 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~  571 (707)
                      .....+..++++|+|+++++++ +|   ...|+.....+.     ...+....++|.+.+.+.+.-..++|.|+.--+..
T Consensus        30 ~~~~~p~~ls~npngr~v~V~g-~g---eY~iyt~~~~r~-----k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVCG-DG---EYEIYTALAWRN-----KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEEE-TT---EEEEEETTTTEE-----EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred             CCCcCCeeEEECCCCCEEEEEc-CC---EEEEEEccCCcc-----cccCceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence            3445578999999999998855 45   778887433322     22345567899996554443447889997433333


Q ss_pred             EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      ..+++... ..+..|-.   |..|++.+.+ .|.+||+.++ +.+..+..  .+|..|.|+++|.++|..+.+ ++.|++
T Consensus       101 ~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~-~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  101 VVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETG-KLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             cceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHc-ceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            33344433 22444432   7777777655 8999999987 77777763  248999999999999999866 577775


Q ss_pred             cccc--cCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235          652 GMVY--SDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA  696 (707)
Q Consensus       652 ~~~~--~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~  696 (707)
                      ...-  ...........+..+.--...    |.+.+|..+ -+|+|.
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~----IkSg~W~~d-~fiYtT  213 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEISER----IKSGCWVED-CFIYTT  213 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE-S------SEEEEETT-EEEEE-
T ss_pred             ecchhcccccccCchhceEEEEEecce----eEEEEEEcC-EEEEEc
Confidence            3211  000011111123333331233    889999876 344443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.46  E-value=0.061  Score=57.62  Aligned_cols=215  Identities=13%  Similarity=0.129  Sum_probs=121.4

Q ss_pred             CcEEEEeCCCCeEEEEEec--CCcEEEEEE---ccCC---CccEEEEEe---------C-CeEEEEECCCCCchhccccc
Q 005235          398 GTVRIWEVESGRCLRVLEI--GEAIQYVAW---NPLP---ELPVLAVSV---------G-QDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~--~~~V~~v~~---spdg---~~~lla~s~---------d-~~V~lwd~~~~~~~~~~~~~  459 (707)
                      ..|+|.|..+.+.+.++..  .+.+.+++.   ..+.   ...+++|+.         . |.|.++++.....       
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-------   74 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-------   74 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc-------
Confidence            3589999988888887777  566666554   3221   223444432         1 4455555433100       


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccce--EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc-eeeeee
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDG--IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL-SHRIPF  536 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~--~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~-~~~~~~  536 (707)
                                   .+          ....  ......++|++++-- +|. |+++.. +   .|.+|++.... .....+
T Consensus        75 -------------~~----------~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g-~---~l~v~~l~~~~~l~~~~~  125 (321)
T PF03178_consen   75 -------------NN----------FKLKLIHSTEVKGPVTAICSF-NGR-LVVAVG-N---KLYVYDLDNSKTLLKKAF  125 (321)
T ss_dssp             --------------------------EEEEEEEEEESS-EEEEEEE-TTE-EEEEET-T---EEEEEEEETTSSEEEEEE
T ss_pred             -------------cc----------eEEEEEEEEeecCcceEhhhh-CCE-EEEeec-C---EEEEEEccCcccchhhhe
Confidence                         00          0111  133567889998866 444 444442 2   99999998888 442333


Q ss_pred             -ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-CeEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235          537 -KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-QRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       537 -~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~  611 (707)
                       .....+.++...  +.++++|. ...|.++.... ...+..+.  ....+++++.|-++++.++++..+|.|.++....
T Consensus       126 ~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  126 YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence             445566666655  56888888 67777764432 22222222  2346689998887778999999999999998763


Q ss_pred             C-------C-cceEEeecC-CCCEEEE---EEcCC--C------CEEEEEeCCCcEEEE
Q 005235          612 S-------S-KPYRVLKCH-PKDITNV---AFHRS--Y------PLFASCSDDCTAYVF  650 (707)
Q Consensus       612 ~-------~-~~~~~l~~h-~~~I~~v---afspd--g------~llaSgs~Dg~I~Vw  650 (707)
                      .       . +.......| ...|+++   ++.|.  +      +.++.++.+|.|.+.
T Consensus       204 ~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  204 EIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             S-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            1       1 222222333 4557777   44452  2      247888899998854

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.44  E-value=0.082  Score=54.24  Aligned_cols=205  Identities=13%  Similarity=0.173  Sum_probs=109.9

Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL  568 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~  568 (707)
                      +.+-...+..++|+|+.+.|+++....  ..|...++...-....+|...+..-.+++..++.++++.- ++.+.++++.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~--~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEP--GEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTT--TEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCC--CEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            335556799999999877666666432  4888888753332223345567888999988876666554 7899999883


Q ss_pred             CC------eEEEEEe-----CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC--CCcceEEe--------ecCCCCEE
Q 005235          569 KQ------RLIKKLE-----TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL--SSKPYRVL--------KCHPKDIT  627 (707)
Q Consensus       569 ~~------~~~~~l~-----~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~--~~~~~~~l--------~~h~~~I~  627 (707)
                      ..      ..+..+.     .+...+-.++|+|.++.|+++-...-..+|.+..  ....+...        ......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            31      1122332     2345589999999988888888777777777654  11111111        12334588


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC-CCC--CCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235          628 NVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG-HTS--SNGRGVMDCKFHPRQPWLFTAGADSVIR  703 (707)
Q Consensus       628 ~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~--~~~~gV~~l~fspdg~~L~s~g~Dg~Ir  703 (707)
                      +++|+|.. .+++.......|.++|      . ++... -...|.. ..+  ..-..--.|+|.++|. |+..+.-+...
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d------~-~G~~~-~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy  245 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD------R-QGRVV-SSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFY  245 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE-------T-T--EE-EEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC------C-CCCEE-EEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEE
Confidence            99999964 5666666777888884      2 22211 1222222 110  0001267899999985 45555666555


Q ss_pred             EE
Q 005235          704 LY  705 (707)
Q Consensus       704 lW  705 (707)
                      +|
T Consensus       246 ~f  247 (248)
T PF06977_consen  246 RF  247 (248)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.43  E-value=0.18  Score=55.68  Aligned_cols=259  Identities=15%  Similarity=0.058  Sum_probs=148.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCe-----EEEEEecCCcEEEEEEc---cCCCccEEEEEeCCeEEEEECCCCCch-----
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGR-----CLRVLEIGEAIQYVAWN---PLPELPVLAVSVGQDVLILNTGLGNEE-----  453 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~-----~l~~l~~~~~V~~v~~s---pdg~~~lla~s~d~~V~lwd~~~~~~~-----  453 (707)
                      ....++.||..|.+||++...+.     ++...+...+|..|+.-   +..+...+|+-.-..+.||.+......     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            44689999999999999986533     44555558899888754   333346788888889999987332211     


Q ss_pred             ------hcccc-----cceeeeccc-------ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 005235          454 ------EQRRV-----KDLLHVETP-------TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA  515 (707)
Q Consensus       454 ------~~~~~-----~~v~~~~~~-------~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d  515 (707)
                            +..|.     -.+....|.       +..-+.||.+.+++.+.-.........--...+++.+..+.|++++.+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence                  01111     011111111       445567888888876654433333333344567888888899998876


Q ss_pred             CCccEEEEEECCC--------------------Ccee--eeeeccCCCeEEE---EEeCCCCEEEEEeCCeEEEEECCCC
Q 005235          516 GESRAIFMHQLSK--------------------KLSH--RIPFKLHGLPVSS---VFHPTRSIFFVSTKKNIRVYDLLKQ  570 (707)
Q Consensus       516 g~~~~V~Iwdl~~--------------------~~~~--~~~~~~~~~V~~v---~fspd~~~l~v~sdg~I~iwDl~~~  570 (707)
                      .   .+..|....                    ++..  ...|.....+..+   .++.....+++-+.+++.+.+.. |
T Consensus       196 ~---~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G  271 (418)
T PF14727_consen  196 W---TLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G  271 (418)
T ss_pred             e---eEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C
Confidence            5   666665311                    0100  0122223344443   34445566777778889888864 5


Q ss_pred             eEEEEEeCCCCCeEEEEEcC----CC---CEEEEEECCCcEEEEECCCCCcceEEeecCCCCE--EEEEEcCCCCEEEEE
Q 005235          571 RLIKKLETGLKEVSSIAIHP----AG---DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI--TNVAFHRSYPLFASC  641 (707)
Q Consensus       571 ~~~~~l~~~~~~I~sl~~sp----dg---~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I--~~vafspdg~llaSg  641 (707)
                      .+....+-...+...+.|..    .+   ..+++++.++.+.||.=.   ++.-..+....+|  .-..|..-.-+|++-
T Consensus       272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~---~L~WsA~l~~~PVal~v~~~~~~~G~IV~L  348 (418)
T PF14727_consen  272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT---TLVWSAQLPHVPVALSVANFNGLKGLIVSL  348 (418)
T ss_pred             eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC---eEEEecCCCCCCEEEEecccCCCCceEEEE
Confidence            54433332222222222221    22   258899999999988532   2222222222222  222233334489999


Q ss_pred             eCCCcEEEEec
Q 005235          642 SDDCTAYVFHG  652 (707)
Q Consensus       642 s~Dg~I~Vwd~  652 (707)
                      +.+|.+.+-.+
T Consensus       349 s~~G~L~v~YL  359 (418)
T PF14727_consen  349 SDEGQLSVSYL  359 (418)
T ss_pred             cCCCcEEEEEe
Confidence            99999999844

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.36  E-value=0.051  Score=55.75  Aligned_cols=196  Identities=13%  Similarity=0.104  Sum_probs=104.7

Q ss_pred             CcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhccc
Q 005235          381 LKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRR  457 (707)
Q Consensus       381 l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~  457 (707)
                      |...|....+++.....+.|...+. +|+.++.+..  .+....|++..++  .++.+. .++.+.++.+......+...
T Consensus        27 LTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~--~~vl~~Er~~~L~~~~~~~~~~~~~~~  103 (248)
T PF06977_consen   27 LTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG--RYVLSEERDQRLYIFTIDDDTTSLDRA  103 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT--EEEEEETTTTEEEEEEE----TT--EE
T ss_pred             cEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC--EEEEEEcCCCcEEEEEEeccccccchh
Confidence            3344455568888888888888886 5899988877  4678999998887  344444 37888888875432221111


Q ss_pred             ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC--C--ceee
Q 005235          458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK--K--LSHR  533 (707)
Q Consensus       458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~--~--~~~~  533 (707)
                      .                  +..+.+     .....+...+-.++|.+.++.|+++....   ...|+.+..  .  ....
T Consensus       104 ~------------------~~~~~l-----~~~~~~N~G~EGla~D~~~~~L~v~kE~~---P~~l~~~~~~~~~~~~~~  157 (248)
T PF06977_consen  104 D------------------VQKISL-----GFPNKGNKGFEGLAYDPKTNRLFVAKERK---PKRLYEVNGFPGGFDLFV  157 (248)
T ss_dssp             E------------------EEEEE--------S---SS--EEEEEETTTTEEEEEEESS---SEEEEEEESTT-SS--EE
T ss_pred             h------------------ceEEec-----ccccCCCcceEEEEEcCCCCEEEEEeCCC---ChhhEEEccccCccceee
Confidence            0                  001100     01113556789999999988888776544   344444432  1  1110


Q ss_pred             ee---e----ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC---------CCeEEEEEcCCCCEE
Q 005235          534 IP---F----KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGL---------KEVSSIAIHPAGDNL  595 (707)
Q Consensus       534 ~~---~----~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~---------~~I~sl~~spdg~~L  595 (707)
                      ..   +    .....+.+++++|....|++-+  .+.|.++| .+|+.+..+.-..         ...-.|+|.++|++.
T Consensus       158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY  236 (248)
T PF06977_consen  158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY  236 (248)
T ss_dssp             EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred             ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence            00   1    1234678999999876666655  68899999 5677666554322         247889999999555


Q ss_pred             EEEECCCcEEEE
Q 005235          596 IVGSREGKLCWF  607 (707)
Q Consensus       596 ~sGs~Dg~I~vw  607 (707)
                      ++ |.-+..++|
T Consensus       237 Iv-sEpNlfy~f  247 (248)
T PF06977_consen  237 IV-SEPNLFYRF  247 (248)
T ss_dssp             EE-ETTTEEEEE
T ss_pred             EE-cCCceEEEe
Confidence            54 466666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.0013  Score=69.36  Aligned_cols=94  Identities=14%  Similarity=0.188  Sum_probs=74.4

Q ss_pred             ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCC
Q 005235          537 KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~  613 (707)
                      .+...|..++|+|... ++..++ +..|.|.|+.+...+..+..+ ..+.+++|.-+. .+|..|-.+|.|.|||++...
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            6677899999999877 566666 999999999999999888888 789999998776 567778889999999999876


Q ss_pred             cceEEeecC--CCCEEEEEE
Q 005235          614 KPYRVLKCH--PKDITNVAF  631 (707)
Q Consensus       614 ~~~~~l~~h--~~~I~~vaf  631 (707)
                      .++..+.+.  ..+|..++.
T Consensus       270 ~~~~e~~a~~t~~pv~~i~~  289 (463)
T KOG1645|consen  270 GPLMELVANVTINPVHKIAP  289 (463)
T ss_pred             chHhhhhhhhccCcceeecc
Confidence            666655541  234544443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.32  E-value=0.012  Score=69.04  Aligned_cols=149  Identities=11%  Similarity=0.089  Sum_probs=102.7

Q ss_pred             CCCCcEEEEE-eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCC------CccEEEEEeCCeEEEEECCCCCchhccc
Q 005235          385 PVACYLEYKG-STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLP------ELPVLAVSVGQDVLILNTGLGNEEEQRR  457 (707)
Q Consensus       385 p~~~~~l~sg-s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg------~~~lla~s~d~~V~lwd~~~~~~~~~~~  457 (707)
                      ..+..+++.. .....|+-.|+++|+.+..|.....+.-+.+.|+.      +...+.|-.++.+..||++.....    
T Consensus       490 ~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k----  565 (794)
T PF08553_consen  490 DQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK----  565 (794)
T ss_pred             ccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc----
Confidence            3444555543 45678999999999999999994433334454531      125677888888999998753210    


Q ss_pred             ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-
Q 005235          458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-  536 (707)
Q Consensus       458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-  536 (707)
                                          .+|.-.     ..........|++-+.+| +||+|+.+|   .|++||-...+.. ..| 
T Consensus       566 --------------------~v~~~~-----k~Y~~~~~Fs~~aTt~~G-~iavgs~~G---~IRLyd~~g~~AK-T~lp  615 (794)
T PF08553_consen  566 --------------------LVDSQS-----KQYSSKNNFSCFATTEDG-YIAVGSNKG---DIRLYDRLGKRAK-TALP  615 (794)
T ss_pred             --------------------eeeccc-----cccccCCCceEEEecCCc-eEEEEeCCC---cEEeecccchhhh-hcCC
Confidence                                111100     011234456677766555 799999988   9999995443332 455 


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEeCCeEEEEEC
Q 005235          537 KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDL  567 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl  567 (707)
                      +...+|.+|..+.||++|++.++.+|.|+++
T Consensus       616 ~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  616 GLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             CCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            7789999999999999999999999999996

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.30  E-value=0.051  Score=59.07  Aligned_cols=238  Identities=13%  Similarity=0.183  Sum_probs=127.5

Q ss_pred             CCCcEEEEeCCCCeEEEEEecC-------------------CcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhc
Q 005235          396 TDGTVRIWEVESGRCLRVLEIG-------------------EAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       396 ~DgtVrIWd~~tg~~l~~l~~~-------------------~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~  455 (707)
                      .++.|.+++..++...+ +...                   +.-.++.||||+. .|+... .+..|..+.+........
T Consensus        61 ~~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~-~la~~~~d~~~v~~~~~~~~~~~~~  138 (353)
T PF00930_consen   61 RDNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK-YLAFLRFDEREVPEYPLPDYSPPDS  138 (353)
T ss_dssp             ETTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS-EEEEEEEE-TTS-EEEEEEESSSTE
T ss_pred             ecCceEEEECCCCCeEE-eccccceeEEcCccceeccccccccccceEECCCCC-EEEEEEECCcCCceEEeeccCCccc
Confidence            35679999988885443 2221                   1236788999995 455544 444454444321110000


Q ss_pred             ccccceeeecccccccCCCCc--EEEEecCCccceE---E---eccCCCeEEEEEcCCCCEEE--EEeCCCCccEEEEEE
Q 005235          456 RRVKDLLHVETPTAPDDNMAS--IVSWLQHDKLDGI---R---LRHFKMVSSVEWHRRGDYLS--TVMPAGESRAIFMHQ  525 (707)
Q Consensus       456 ~~~~~v~~~~~~~~~~~~d~~--i~iW~~~~~~~~~---~---~~h~~~V~~v~~sp~g~~la--t~s~dg~~~~V~Iwd  525 (707)
                       .-..+....++ .+|.....  +.++++.++....   .   ..-...+..+.|.+++..|+  ...++.....+.+.|
T Consensus       139 -~yp~~~~~~YP-k~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d  216 (353)
T PF00930_consen  139 -QYPEVESIRYP-KAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCD  216 (353)
T ss_dssp             -SS-EEEEEE---BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEE
T ss_pred             -cCCcccccccC-CCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEE
Confidence             00012222222 12333333  3446666655422   1   13355688999999998443  444555556777888


Q ss_pred             CCCCceeeeee--ccCCCe---EEEEEe-CCCCEEEEEe--C--CeEEEEECCCCeEEEEEeCCCCCeEE-EEEcCCCCE
Q 005235          526 LSKKLSHRIPF--KLHGLP---VSSVFH-PTRSIFFVST--K--KNIRVYDLLKQRLIKKLETGLKEVSS-IAIHPAGDN  594 (707)
Q Consensus       526 l~~~~~~~~~~--~~~~~V---~~v~fs-pd~~~l~v~s--d--g~I~iwDl~~~~~~~~l~~~~~~I~s-l~~spdg~~  594 (707)
                      ..++.+. ..+  ...+.|   ....|. +++..++..+  +  .+|.+++...+. .+.+..+.-.|.. +.++++++.
T Consensus       217 ~~tg~~~-~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~  294 (353)
T PF00930_consen  217 ASTGETR-VVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNR  294 (353)
T ss_dssp             ECTTTCE-EEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSE
T ss_pred             CCCCcee-EEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCE
Confidence            8877665 333  334433   356665 6666655544  5  467777777665 4466666566744 678888876


Q ss_pred             EE-EEECC----CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235          595 LI-VGSRE----GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS  640 (707)
Q Consensus       595 L~-sGs~D----g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS  640 (707)
                      |. ++..+    ..|+.-++.. ....+.|......-..+.|||++++++.
T Consensus       295 iyf~a~~~~p~~r~lY~v~~~~-~~~~~~LT~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  295 IYFTANGDNPGERHLYRVSLDS-GGEPKCLTCEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             EEEEESSGGTTSBEEEEEETTE-TTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred             EEEEecCCCCCceEEEEEEeCC-CCCeEeccCCCCCceEEEECCCCCEEEE
Confidence            65 44432    2355555551 3456667655544469999999997663

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.11  Score=57.20  Aligned_cols=216  Identities=13%  Similarity=0.158  Sum_probs=145.3

Q ss_pred             CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcc
Q 005235          380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQR  456 (707)
Q Consensus       380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~  456 (707)
                      .+.-++......++...++.|.+.|..+.+++...........++++|++. .++++..   ++.+.+.|..+...    
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~-~vYV~n~~~~~~~vsvid~~t~~~----  152 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGK-YVYVANAGNGNNTVSVIDAATNKV----  152 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCC-EEEEEecccCCceEEEEeCCCCeE----
Confidence            333444555566666678899999988888888887777888999999995 4555544   57777777655421    


Q ss_pred             cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee--
Q 005235          457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI--  534 (707)
Q Consensus       457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~--  534 (707)
                                           ..+        ...+. .+ ..+++.|+|..+..+..+  .+.|.+.+.+..... .  
T Consensus       153 ---------------------~~~--------~~vG~-~P-~~~a~~p~g~~vyv~~~~--~~~v~vi~~~~~~v~-~~~  198 (381)
T COG3391         153 ---------------------TAT--------IPVGN-TP-TGVAVDPDGNKVYVTNSD--DNTVSVIDTSGNSVV-RGS  198 (381)
T ss_pred             ---------------------EEE--------EecCC-Cc-ceEEECCCCCeEEEEecC--CCeEEEEeCCCccee-ccc
Confidence                                 111        01111 22 889999999977766632  249999997766443 1  


Q ss_pred             ---eeccCCCeEEEEEeCCCCEEEEEe--C--CeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEEEEC-CCcEE
Q 005235          535 ---PFKLHGLPVSSVFHPTRSIFFVST--K--KNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAGDNLIVGSR-EGKLC  605 (707)
Q Consensus       535 ---~~~~~~~V~~v~fspd~~~l~v~s--d--g~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg~~L~sGs~-Dg~I~  605 (707)
                         .+........+.+.|++..+.+..  .  +.+...|..++..... +.........+.++|+|..+.+... .+.+.
T Consensus       199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~  278 (381)
T COG3391         199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVS  278 (381)
T ss_pred             cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEE
Confidence               123344557789999999888876  2  5899999998877765 2222115677899999999988844 48899


Q ss_pred             EEECCCCCcceEEeecCC---CCEEEEEEcCCC
Q 005235          606 WFDMDLSSKPYRVLKCHP---KDITNVAFHRSY  635 (707)
Q Consensus       606 vwDl~~~~~~~~~l~~h~---~~I~~vafspdg  635 (707)
                      +.|..+. ..........   ..+..+++.+..
T Consensus       279 vid~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         279 VIDGATD-RVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             EEeCCCC-ceeeeecccccccccceeccceeec
Confidence            9998876 4444443332   245666666543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.23  E-value=0.26  Score=54.71  Aligned_cols=212  Identities=15%  Similarity=0.166  Sum_probs=108.1

Q ss_pred             eCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235          395 STDGTVRIWEVESGRCLRVL-EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN  473 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l-~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~  473 (707)
                      ++..+|+|.|+.+|+.+... ... ...+++|.+++. .++....+..-.      .  .                ....
T Consensus       147 ~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~-~~~y~~~~~~~~------~--~----------------~~~~  200 (414)
T PF02897_consen  147 SEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGK-GFFYTRFDEDQR------T--S----------------DSGY  200 (414)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSS-EEEEEECSTTTS------S-------------------CCGC
T ss_pred             CceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCC-EEEEEEeCcccc------c--c----------------cCCC
Confidence            33355999999999876532 221 123499999984 455555433100      0  0                0000


Q ss_pred             CCcEEEEecCCccce---EEeccC-CC-eEEEEEcCCCCEEEEEeCCCCc-cEEEEEECCCC----ceeeeee-ccCCCe
Q 005235          474 MASIVSWLQHDKLDG---IRLRHF-KM-VSSVEWHRRGDYLSTVMPAGES-RAIFMHQLSKK----LSHRIPF-KLHGLP  542 (707)
Q Consensus       474 d~~i~iW~~~~~~~~---~~~~h~-~~-V~~v~~sp~g~~lat~s~dg~~-~~V~Iwdl~~~----~~~~~~~-~~~~~V  542 (707)
                      ...|..|.+.+....   +..... .. ...+..+++|++|+..+..+.. ..+.+.++...    ... ..+ .....+
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~-~~l~~~~~~~  279 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP-KLLSPREDGV  279 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE-EEEEESSSS-
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCc-EEEeCCCCce
Confidence            112333333322211   111212 22 5678889999998877766655 78999999875    222 444 444444


Q ss_pred             EEEEEeCCCCEEEEEe----CCeEEEEECCCCe---EEEEEeCCCCC--eEEEEEcCCCCEEEEE-ECCC--cEEEEECC
Q 005235          543 VSSVFHPTRSIFFVST----KKNIRVYDLLKQR---LIKKLETGLKE--VSSIAIHPAGDNLIVG-SREG--KLCWFDMD  610 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s----dg~I~iwDl~~~~---~~~~l~~~~~~--I~sl~~spdg~~L~sG-s~Dg--~I~vwDl~  610 (707)
                      ....-+..+.+++.+.    .+.|...++....   ....+..+...  +..+..  .+++|+.. ..++  .|+++++.
T Consensus       280 ~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  280 EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence            4444444444555443    3778888888754   23355555443  444444  45566554 4444  48899987


Q ss_pred             CCCcceEEeec-CCCCEEEEEEcCCCC
Q 005235          611 LSSKPYRVLKC-HPKDITNVAFHRSYP  636 (707)
Q Consensus       611 ~~~~~~~~l~~-h~~~I~~vafspdg~  636 (707)
                      .+ .....+.. -.+.|..+...++++
T Consensus       358 ~~-~~~~~~~~p~~g~v~~~~~~~~~~  383 (414)
T PF02897_consen  358 DG-KESREIPLPEAGSVSGVSGDFDSD  383 (414)
T ss_dssp             -T-EEEEEEESSSSSEEEEEES-TT-S
T ss_pred             CC-cEEeeecCCcceEEeccCCCCCCC
Confidence            22 33333332 234456665555555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.22  E-value=0.093  Score=55.61  Aligned_cols=191  Identities=16%  Similarity=0.213  Sum_probs=114.4

Q ss_pred             eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235          395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM  474 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d  474 (707)
                      +--.+|-|-|+..++.+..+...++..-.-+.++   .+.+.|.||.+....+.........++. ++.           
T Consensus       115 TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~---~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~-~F~-----------  179 (342)
T PF06433_consen  115 TPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNR---GFSMLCGDGSLLTVTLDADGKEAQKSTK-VFD-----------  179 (342)
T ss_dssp             SSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETT---EEEEEETTSCEEEEEETSTSSEEEEEEE-ESS-----------
T ss_pred             CCCCeEEEEECCCCceeeeecCCCEEEEEecCCC---ceEEEecCCceEEEEECCCCCEeEeecc-ccC-----------
Confidence            3445677888888888888887776655544444   4899999999988887744322111111 110           


Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eeec-----------cCCCe
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPFK-----------LHGLP  542 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~~-----------~~~~V  542 (707)
                             .         .....+..-++...+..++..+..|   .|+--+++...... .++.           ..+.-
T Consensus       180 -------~---------~~dp~f~~~~~~~~~~~~~F~Sy~G---~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~  240 (342)
T PF06433_consen  180 -------P---------DDDPLFEHPAYSRDGGRLYFVSYEG---NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW  240 (342)
T ss_dssp             -------T---------TTS-B-S--EEETTTTEEEEEBTTS---EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred             -------C---------CCcccccccceECCCCeEEEEecCC---EEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence                   0         0111111223344445555555555   66655555543210 1110           12456


Q ss_pred             EEEEEeCCCCEEEEEe----C-------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEE-CCCcEEEEEC
Q 005235          543 VSSVFHPTRSIFFVST----K-------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD-NLIVGS-REGKLCWFDM  609 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s----d-------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs-~Dg~I~vwDl  609 (707)
                      +-+++|+....|++.-    +       ..|-+||+.+++.+.++... .++.+|+++.+.. +|++.+ .++.|.+||.
T Consensus       241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~  319 (342)
T PF06433_consen  241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDA  319 (342)
T ss_dssp             S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred             eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence            6789998877777642    1       25999999999999998754 4688999998875 554444 5789999999


Q ss_pred             CCCCcceEEeec
Q 005235          610 DLSSKPYRVLKC  621 (707)
Q Consensus       610 ~~~~~~~~~l~~  621 (707)
                      .++ ++++.+..
T Consensus       320 ~tG-k~~~~~~~  330 (342)
T PF06433_consen  320 ATG-KLVRSIEQ  330 (342)
T ss_dssp             TT---EEEEE--
T ss_pred             cCC-cEEeehhc
Confidence            988 77777653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.20  E-value=0.11  Score=55.22  Aligned_cols=222  Identities=17%  Similarity=0.154  Sum_probs=130.9

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      +++....++++.-..+.|.-|+..+|+. ..+...+.+.++.....+  .++.++.. .+.++++..+..          
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~--g~Lv~~~~-g~~~~~~~~~~~----------   97 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAG--GRLIACEH-GVRLLDPDTGGK----------   97 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCC--CeEEEEcc-ccEEEeccCCce----------
Confidence            4566667888888888999999887754 355555555555544443  13333333 344555433311          


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC---CC-----CccEEEEEECC-CCceee
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP---AG-----ESRAIFMHQLS-KKLSHR  533 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~---dg-----~~~~V~Iwdl~-~~~~~~  533 (707)
                                    +..+....     .-.-....+.+...|+|.+-++...   .+     ..+  .+|-+. .+... 
T Consensus        98 --------------~t~~~~~~-----~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G--~lyr~~p~g~~~-  155 (307)
T COG3386          98 --------------ITLLAEPE-----DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG--SLYRVDPDGGVV-  155 (307)
T ss_pred             --------------eEEecccc-----CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc--eEEEEcCCCCEE-
Confidence                          01110000     0011234456777888887666554   11     123  444444 34443 


Q ss_pred             eee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--C----e-EEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-
Q 005235          534 IPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--Q----R-LIKKLETGLKEVSSIAIHPAGDNLIVGSREG-  602 (707)
Q Consensus       534 ~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~----~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg-  602 (707)
                      ..+ .+-...+.++|||+++.|+++.  .+.|..|++..  +    + ....+....+..-.+++..+|.+-+++-.+| 
T Consensus       156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~  235 (307)
T COG3386         156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGG  235 (307)
T ss_pred             EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCc
Confidence            444 5456678899999999988886  58888888762  1    1 1112222335566778888888776555554 


Q ss_pred             cEEEEECCCCCcceEEeecCCCCEEEEEEc-CCCC-EEEEEe
Q 005235          603 KLCWFDMDLSSKPYRVLKCHPKDITNVAFH-RSYP-LFASCS  642 (707)
Q Consensus       603 ~I~vwDl~~~~~~~~~l~~h~~~I~~vafs-pdg~-llaSgs  642 (707)
                      .|.+|+.+ + +++..+.-....+++++|- |+.+ +++++.
T Consensus       236 ~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         236 RVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             eEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            89999998 5 7777777776778888884 3444 444444

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.18  E-value=0.0022  Score=72.04  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=79.5

Q ss_pred             EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCccc
Q 005235          586 IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV  665 (707)
Q Consensus       586 l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~  665 (707)
                      -+++..+++++.|+.-|.|+||+-..+........+-.+.+..+..|++..++|.|+..|.|.||-+.      . ....
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~------~-~~p~  111 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN------K-ELPR  111 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhh------c-cCCC
Confidence            34455789999999999999999876643333333445667778889999999999999999999443      2 1111


Q ss_pred             ceEEe-eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          666 PLEIL-RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       666 pl~~l-~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      +...+ ..|.. +...|++++|++++..|++|..-|+|.+-
T Consensus       112 ~~~~~t~~d~~-~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~  151 (726)
T KOG3621|consen  112 DLDYVTPCDKS-HKCRVTALEWSKNGMKLYSGDSQGKVVLT  151 (726)
T ss_pred             cceeecccccc-CCceEEEEEecccccEEeecCCCceEEEE
Confidence            11112 12221 12339999999999999999999998753

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.17  E-value=0.037  Score=65.17  Aligned_cols=131  Identities=13%  Similarity=0.215  Sum_probs=89.4

Q ss_pred             CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC-------CCEEEEEECCCcEEEEECCCCCcceEEeec----CCCCEE
Q 005235          559 KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA-------GDNLIVGSREGKLCWFDMDLSSKPYRVLKC----HPKDIT  627 (707)
Q Consensus       559 dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd-------g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~----h~~~I~  627 (707)
                      ...|+-.||..|+.+.....+... .-..|.|+       ....++|-.+..|+.||++..+..+..-..    .....+
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            488999999999999999887543 23344443       345677888899999999976422211112    234566


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       628 ~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      |++-+.+| +||.||.+|.||+||-     +..+    .-..|.|-..+    |.+|..+.||+||++.+.. .+.|+
T Consensus       582 ~~aTt~~G-~iavgs~~G~IRLyd~-----~g~~----AKT~lp~lG~p----I~~iDvt~DGkwilaTc~t-yLlLi  644 (794)
T PF08553_consen  582 CFATTEDG-YIAVGSNKGDIRLYDR-----LGKR----AKTALPGLGDP----IIGIDVTADGKWILATCKT-YLLLI  644 (794)
T ss_pred             EEEecCCc-eEEEEeCCCcEEeecc-----cchh----hhhcCCCCCCC----eeEEEecCCCcEEEEeecc-eEEEE
Confidence            77776666 6899999999999962     1111    12334555555    9999999999999777643 44443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.17  E-value=0.14  Score=56.74  Aligned_cols=165  Identities=12%  Similarity=0.096  Sum_probs=91.7

Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec---cCCC-----eEEEEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK---LHGL-----PVSSVF  547 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~---~~~~-----V~~v~f  547 (707)
                      .|.+|+..+.......--.+.|.++.|+.+ ..|++...+|   .++++++.... + ..++   ....     +....|
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG---~v~vy~~~G~~-~-fsl~~~i~~~~v~e~~i~~~~~  135 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDG---TVRVYDLFGEF-Q-FSLGEEIEEEKVLECRIFAIWF  135 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCC---EEEEEeCCCce-e-echhhhccccCccccccccccc
Confidence            477888777766553322389999999875 5666777888   99999997554 2 2221   1112     222233


Q ss_pred             eCCCCEEEEEeCCeEEEEECCCCe-EEEEEe---C-------CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235          548 HPTRSIFFVSTKKNIRVYDLLKQR-LIKKLE---T-------GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       548 spd~~~l~v~sdg~I~iwDl~~~~-~~~~l~---~-------~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                      ..+| .++...++.+.+.+-.... ..+.+.   .       .........++.+....+....++.+.+.+-...    
T Consensus       136 ~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----  210 (410)
T PF04841_consen  136 YKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----  210 (410)
T ss_pred             CCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc----
Confidence            4455 2222334555444322211 111111   0       0000001223444445555555556664443321    


Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          617 RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       617 ~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      ..+. ..+++..+++||+|+++|.-..+|.+.|...
T Consensus       211 ~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ss  245 (410)
T PF04841_consen  211 KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSS  245 (410)
T ss_pred             cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            1122 2467999999999999999999999988853

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.11  E-value=0.32  Score=57.28  Aligned_cols=294  Identities=11%  Similarity=0.056  Sum_probs=149.5

Q ss_pred             cEEEEEeCCCcEEEEeC-CCCeEEEEEec-----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc-----
Q 005235          389 YLEYKGSTDGTVRIWEV-ESGRCLRVLEI-----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR-----  457 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~-~tg~~l~~l~~-----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~-----  457 (707)
                      .+++.|..+..+.+--. ..+..+.....     ...|.-.+|-.|. .+|+++..||.+.-+.+......+...     
T Consensus       549 ~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~-~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l  627 (1096)
T KOG1897|consen  549 RLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI-HYLLVALGDGALLYFVLDINTGQLSDRKKVTL  627 (1096)
T ss_pred             eEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc-eEEEEEcCCceEEEEEEEcccceEcccccccc
Confidence            37888877666555433 33333322222     3445555665655 478888899988766654432111110     


Q ss_pred             -ccceeeeccc-----ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCC
Q 005235          458 -VKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKK  529 (707)
Q Consensus       458 -~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~  529 (707)
                       +.++.--.|.     ..-+.++....+|...++..-.-......-.-+.|+.  -+..++++..+    .+.+..++.-
T Consensus       628 Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~----~l~i~tid~i  703 (1096)
T KOG1897|consen  628 GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGG----ALTIGTIDEI  703 (1096)
T ss_pred             CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCC----ceEEEEecch
Confidence             1111000110     1223344445555443333211111000001122322  23455555533    5777666543


Q ss_pred             cee-eeeeccCCCeEEEEEeCCCCEEEEEeC------C---------eEEEEECCCCeEEEEEeCCC----CCeEEEEEc
Q 005235          530 LSH-RIPFKLHGLPVSSVFHPTRSIFFVSTK------K---------NIRVYDLLKQRLIKKLETGL----KEVSSIAIH  589 (707)
Q Consensus       530 ~~~-~~~~~~~~~V~~v~fspd~~~l~v~sd------g---------~I~iwDl~~~~~~~~l~~~~----~~I~sl~~s  589 (707)
                      +.. .+++.....++.+++++...++++.++      .         .++++|-.+-+.+...+-..    -.|.++.|.
T Consensus       704 qkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~  783 (1096)
T KOG1897|consen  704 QKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFT  783 (1096)
T ss_pred             hhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeec
Confidence            322 133466677888999986666666542      1         36777766655544333211    125556687


Q ss_pred             CC-CCEEEEEEC----------CCcEEEEECCCCCcceEEeecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc
Q 005235          590 PA-GDNLIVGSR----------EGKLCWFDMDLSSKPYRVLKCH--PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYS  656 (707)
Q Consensus       590 pd-g~~L~sGs~----------Dg~I~vwDl~~~~~~~~~l~~h--~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~  656 (707)
                      .| +.++++|+.          .|+|.||.+... ..++....+  .+++.++.. -+|+++|+-  ..+|++|+.    
T Consensus       784 ~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~----  855 (1096)
T KOG1897|consen  784 DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEW----  855 (1096)
T ss_pred             CCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEc----
Confidence            77 788888864          588999988763 333333222  244444322 156676654  568999944    


Q ss_pred             CCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235          657 DLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       657 Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                        .....   +..-..|...    +..+...-.|..|+.|..=+.|.+
T Consensus       856 --t~~~e---Lr~e~~~~~~----~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  856 --TTERE---LRIECNISNP----IIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             --cccce---ehhhhcccCC----eEEEEEEecCcEEEEeeccceEEE
Confidence              33322   2222333333    666666667777777765555443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.11  E-value=0.27  Score=51.13  Aligned_cols=186  Identities=17%  Similarity=0.238  Sum_probs=107.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee--------------eeccCCCeEEEE---EeCCCCEEEE
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI--------------PFKLHGLPVSSV---FHPTRSIFFV  556 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~--------------~~~~~~~V~~v~---fspd~~~l~v  556 (707)
                      ...|..+...++-+.|++.+. +   .+.++++..-.....              .+.....+..++   -......|++
T Consensus        35 ~~~I~ql~vl~~~~~llvLsd-~---~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v  110 (275)
T PF00780_consen   35 LSSITQLSVLPELNLLLVLSD-G---QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV  110 (275)
T ss_pred             cceEEEEEEecccCEEEEEcC-C---ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE
Confidence            334999999998888877764 5   999999876444310              112223444444   2234456777


Q ss_pred             EeCCeEEEEECCCC-----eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC---------
Q 005235          557 STKKNIRVYDLLKQ-----RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH---------  622 (707)
Q Consensus       557 ~sdg~I~iwDl~~~-----~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h---------  622 (707)
                      +..+.|.+|.....     +..+.+... ..+.+++|.  ++.|++|..+ ...+.|+.++ .+...+...         
T Consensus       111 a~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~-~~~~l~~~~~~~~~~~~~  185 (275)
T PF00780_consen  111 AVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGTSK-GFYLIDLNTG-SPSELLDPSDSSSSFKSR  185 (275)
T ss_pred             EECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEeCC-ceEEEecCCC-CceEEeCccCCcchhhhc
Confidence            77889999987653     456666655 678999998  6788888755 5888899865 333322211         


Q ss_pred             ---CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235          623 ---PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD  699 (707)
Q Consensus       623 ---~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D  699 (707)
                         ..++..+... ++.+|++. ++  +-+|-     +....+..  -..+.-...     ..++++  ..++|+..+.+
T Consensus       186 ~~~~~~~~~~~~~-~~e~Ll~~-~~--~g~fv-----~~~G~~~r--~~~i~W~~~-----p~~~~~--~~pyli~~~~~  247 (275)
T PF00780_consen  186 NSSSKPLGIFQLS-DNEFLLCY-DN--IGVFV-----NKNGEPSR--KSTIQWSSA-----PQSVAY--SSPYLIAFSSN  247 (275)
T ss_pred             ccCCCceEEEEeC-CceEEEEe-cc--eEEEE-----cCCCCcCc--ccEEEcCCc-----hhEEEE--ECCEEEEECCC
Confidence               1233333333 34455432 22  22331     22222221  112222222     566666  45788888765


Q ss_pred             CcEEEEeC
Q 005235          700 SVIRLYCH  707 (707)
Q Consensus       700 g~IrlWdl  707 (707)
                      + |-||++
T Consensus       248 ~-iEV~~~  254 (275)
T PF00780_consen  248 S-IEVRSL  254 (275)
T ss_pred             E-EEEEEC
Confidence            4 999875

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.10  E-value=0.26  Score=54.72  Aligned_cols=153  Identities=20%  Similarity=0.231  Sum_probs=86.4

Q ss_pred             EEEEcCCCCEEEEEeCCCC--------ccEEEEEECCCCcee-eeee-ccC-CC-eEEEEEeCCCCEEEEEe----C-Ce
Q 005235          499 SVEWHRRGDYLSTVMPAGE--------SRAIFMHQLSKKLSH-RIPF-KLH-GL-PVSSVFHPTRSIFFVST----K-KN  561 (707)
Q Consensus       499 ~v~~sp~g~~lat~s~dg~--------~~~V~Iwdl~~~~~~-~~~~-~~~-~~-V~~v~fspd~~~l~v~s----d-g~  561 (707)
                      .++|.++|+.|+....+..        ...|..|.+.+.... ...| ... .. ...+..++++++|++..    + ..
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~  253 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE  253 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence            4999999998887776553        567999999887654 1344 322 23 56888999999988754    3 56


Q ss_pred             EEEEECCCC----eEEEEEeCCCCCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCCCc--ceEEeecCCCC--EEEEE
Q 005235          562 IRVYDLLKQ----RLIKKLETGLKEVSSIAIHPAGDNLIVGS---REGKLCWFDMDLSSK--PYRVLKCHPKD--ITNVA  630 (707)
Q Consensus       562 I~iwDl~~~----~~~~~l~~~~~~I~sl~~spdg~~L~sGs---~Dg~I~vwDl~~~~~--~~~~l~~h~~~--I~~va  630 (707)
                      |.+.++..+    ...+.+......+....-+.++.+++...   ..+.|.-.++.....  ....+-.|...  +..+.
T Consensus       254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~  333 (414)
T PF02897_consen  254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS  333 (414)
T ss_dssp             EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred             EEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence            889998874    23333443333443333333444444332   246777788876532  12356666654  44444


Q ss_pred             EcCCCCEEEEEeCCC--cEEEEec
Q 005235          631 FHRSYPLFASCSDDC--TAYVFHG  652 (707)
Q Consensus       631 fspdg~llaSgs~Dg--~I~Vwd~  652 (707)
                      ... +.++++...++  .|++++.
T Consensus       334 ~~~-~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  334 LFK-DYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             EET-TEEEEEEEETTEEEEEEEET
T ss_pred             EEC-CEEEEEEEECCccEEEEEEC
Confidence            432 23555555666  4666643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.0023  Score=71.09  Aligned_cols=94  Identities=18%  Similarity=0.218  Sum_probs=75.6

Q ss_pred             CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeE-EEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235          539 HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVS-SIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~-sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                      ...+..+.|+|...++|.++ +|.|.++.+. -+.+.++..+...++ +++|.|||+.||+|-.||+|++.|+.++....
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            44677899999999999998 8999999988 556777875666666 99999999999999999999999999885444


Q ss_pred             EEeecCCCCEEEEEEcC
Q 005235          617 RVLKCHPKDITNVAFHR  633 (707)
Q Consensus       617 ~~l~~h~~~I~~vafsp  633 (707)
                      ..+..-...|.++.|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            33333456677777763

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.94  E-value=0.33  Score=48.33  Aligned_cols=144  Identities=13%  Similarity=0.197  Sum_probs=92.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCC------ccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEE-
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGE------SRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYD-  566 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~------~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwD-  566 (707)
                      ..+.-..+|+|+|++-...+-.      .+.++.|.....-.  ..+..-+.-+.++|+.+.+.+..-.  +-.|.-|| 
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~--~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVE--LIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccCCCce--eeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            3445567899999776655431      23455554432211  2224445567889998877776654  67786677 


Q ss_pred             -CCCCe-----EEEEEeC----CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC-CC
Q 005235          567 -LLKQR-----LIKKLET----GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SY  635 (707)
Q Consensus       567 -l~~~~-----~~~~l~~----~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg  635 (707)
                       ..+|.     .+..+..    .....-.+++.-+|.+.++.-..++|.-+|..++ +.+..+.-....|++++|-- +.
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~qitsccFgGkn~  266 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTPQITSCCFGGKNL  266 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCCceEEEEecCCCc
Confidence             66653     3333332    1122345666778888888888899999999988 77888888899999999953 33


Q ss_pred             CEE-EEEe
Q 005235          636 PLF-ASCS  642 (707)
Q Consensus       636 ~ll-aSgs  642 (707)
                      .+| +++.
T Consensus       267 d~~yvT~a  274 (310)
T KOG4499|consen  267 DILYVTTA  274 (310)
T ss_pred             cEEEEEeh
Confidence            344 3443

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.94  E-value=0.057  Score=62.49  Aligned_cols=185  Identities=12%  Similarity=0.130  Sum_probs=106.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeC------CCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCC--eEEEE
Q 005235          495 KMVSSVEWHRRGDYLSTVMP------AGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKK--NIRVY  565 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~------dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg--~I~iw  565 (707)
                      ..+.+.+++|+|+.+|....      + ....|.+.+.....   .++ ... ......|+|+|..|++..++  .+++.
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d-~~s~Lwv~~~gg~~---~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPD-PASSLWVGPLGGVA---VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCC-cceEEEEEeCCCcc---eeeecCC-CCCCceECCCCCceEEEecCcceEEEe
Confidence            46788999999999887762      2 23466666653332   333 222 37888999998877766532  23333


Q ss_pred             -----------ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEE---EECCCCCcce---EEee-cCCCCEE
Q 005235          566 -----------DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCW---FDMDLSSKPY---RVLK-CHPKDIT  627 (707)
Q Consensus       566 -----------Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~v---wDl~~~~~~~---~~l~-~h~~~I~  627 (707)
                                 ++..+....   ...+.|.++.|||||..|+... +|+|++   -....+...+   ..+. .-...+.
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~  500 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV  500 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence                       333332222   1235699999999999988766 477877   4433332111   1122 2233468


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC--CCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235          628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH--TSSNGRGVMDCKFHPRQPWLFTAGADSVIR  703 (707)
Q Consensus       628 ~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh--~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir  703 (707)
                      ++.|..++.++ .+..++...+|.+...+...+        .+.+.  ..    ++.+|+=++.  -|+.+.++|.+.
T Consensus       501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~--------~~~~~n~~~----~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD--------ALPSRNLSA----PVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cceEecCCEEE-EEecCCCCceEEEecCCcccc--------ccCCCCccC----ceEEEecCCc--eEEEEcCCceEE
Confidence            89999999865 555566666776543321111        11221  22    2777777763  355556666544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.94  E-value=0.18  Score=51.47  Aligned_cols=216  Identities=13%  Similarity=0.067  Sum_probs=129.5

Q ss_pred             CCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC-eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC
Q 005235          406 ESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ-DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD  484 (707)
Q Consensus       406 ~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~-~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~  484 (707)
                      +.|+++........-..|+|+|.-...++.+-.-| ...++|+.......                       .+-   .
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv-----------------------~~~---s  109 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV-----------------------TLV---S  109 (366)
T ss_pred             cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE-----------------------EEe---c
Confidence            35788877777777788999998754444444444 45667765543211                       000   0


Q ss_pred             ccceEEeccCCCeEEEEEcCCCCEEEEEeCC--CCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCC-
Q 005235          485 KLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA--GESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKK-  560 (707)
Q Consensus       485 ~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d--g~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg-  560 (707)
                      .....+.+|.      .||++|.+|...-.|  .+.+.|-|||...+-...-.| .+.-....+.+.+||..++++..| 
T Consensus       110 ~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGI  183 (366)
T COG3490         110 QEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGI  183 (366)
T ss_pred             ccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCce
Confidence            0111233443      689999999876544  245689999998654443556 666677889999999999987532 


Q ss_pred             ------------------eEEEEECCCCeEEEEEe----CCCCCeEEEEEcCCCCEEEEEECCCcE----EEEECCCCCc
Q 005235          561 ------------------NIRVYDLLKQRLIKKLE----TGLKEVSSIAIHPAGDNLIVGSREGKL----CWFDMDLSSK  614 (707)
Q Consensus       561 ------------------~I~iwDl~~~~~~~~l~----~~~~~I~sl~~spdg~~L~sGs~Dg~I----~vwDl~~~~~  614 (707)
                                        ++.+.|..++.++.+..    .+...|..+++.++|..++.+-+.|.-    -+.-.....+
T Consensus       184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~  263 (366)
T COG3490         184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGE  263 (366)
T ss_pred             ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCC
Confidence                              24445555555554332    233458888999988777766554321    0111111223


Q ss_pred             ceEEeec-------CCCCEEEEEEcCCCCEEEEEeCCC-cEEEEecc
Q 005235          615 PYRVLKC-------HPKDITNVAFHRSYPLFASCSDDC-TAYVFHGM  653 (707)
Q Consensus       615 ~~~~l~~-------h~~~I~~vafspdg~llaSgs~Dg-~I~Vwd~~  653 (707)
                      +++.+..       ....|-+|+.+.+..+++..|-.| ...+||..
T Consensus       264 ~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~  310 (366)
T COG3490         264 PLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA  310 (366)
T ss_pred             cCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence            4433321       224577888888777777666554 56789544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.91  E-value=0.32  Score=55.39  Aligned_cols=219  Identities=13%  Similarity=0.094  Sum_probs=121.7

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCc------E-EEEEEccCCCccEEEEE---------eCCeEEEEECCCCCc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEA------I-QYVAWNPLPELPVLAVS---------VGQDVLILNTGLGNE  452 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~------V-~~v~~spdg~~~lla~s---------~d~~V~lwd~~~~~~  452 (707)
                      ..++.++.+|.|.-+|..||+.+..+.....      + .+..+.. +  .+++++         .++.|..+|..++..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK-K--LVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC-C--EEEEeccccccccCCCCcEEEEEECCCCce
Confidence            6888889999999999999999988876433      1 1222222 3  344443         256788888887754


Q ss_pred             hhccccc---------------------------ceeeeccc-ccccCCC------------------CcEEEEecCCcc
Q 005235          453 EEQRRVK---------------------------DLLHVETP-TAPDDNM------------------ASIVSWLQHDKL  486 (707)
Q Consensus       453 ~~~~~~~---------------------------~v~~~~~~-~~~~~~d------------------~~i~iW~~~~~~  486 (707)
                      .-.....                           ..+...-. +..+..+                  +.+.-++..++.
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            3221110                           00000000 2222222                  256666666555


Q ss_pred             ceEEe---ccCC----CeEEEEEc----CCCC---EEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCC
Q 005235          487 DGIRL---RHFK----MVSSVEWH----RRGD---YLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS  552 (707)
Q Consensus       487 ~~~~~---~h~~----~V~~v~~s----p~g~---~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~  552 (707)
                      ..-..   .|..    ......+.    -+|.   .+++++.+|   .+...|..+++.. -.+...  ...++.+|  .
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G---~l~ald~~tG~~~-W~~~~~--~~~~~~~~--~  339 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNG---FFYVLDRTTGKLI-SARPEV--EQPMAYDP--G  339 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCc---eEEEEECCCCcEe-eEeEee--ccccccCC--c
Confidence            43221   1110    00000111    1333   566677777   8999999998766 333111  11223333  2


Q ss_pred             EEEEE-------------------eCCeEEEEECCCCeEEEEEeCCC--------CC--eEEEEEcCCCCEEEEEECCCc
Q 005235          553 IFFVS-------------------TKKNIRVYDLLKQRLIKKLETGL--------KE--VSSIAIHPAGDNLIVGSREGK  603 (707)
Q Consensus       553 ~l~v~-------------------sdg~I~iwDl~~~~~~~~l~~~~--------~~--I~sl~~spdg~~L~sGs~Dg~  603 (707)
                      .++++                   .++.|..+|+.+++.+.+.....        ..  ...+..  .+..|++|+.||.
T Consensus       340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~  417 (488)
T cd00216         340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGY  417 (488)
T ss_pred             eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCe
Confidence            22221                   25789999999998887766441        11  122333  4678999999999


Q ss_pred             EEEEECCCCCcceEEeec
Q 005235          604 LCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       604 I~vwDl~~~~~~~~~l~~  621 (707)
                      |+.+|..++ +.+-.++.
T Consensus       418 l~ald~~tG-~~lW~~~~  434 (488)
T cd00216         418 FRAFDATTG-KELWKFRT  434 (488)
T ss_pred             EEEEECCCC-ceeeEEEC
Confidence            999999998 44544543

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.90  E-value=0.37  Score=48.67  Aligned_cols=162  Identities=14%  Similarity=0.154  Sum_probs=105.9

Q ss_pred             EEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEe
Q 005235          402 IWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWL  481 (707)
Q Consensus       402 IWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~  481 (707)
                      .|.+..++|+..       .-+...++....++.++..+.+.-.|+.+|.                          .+|.
T Consensus         2 rW~vd~~kCVDa-------spLVV~~dskT~v~igSHs~~~~avd~~sG~--------------------------~~We   48 (354)
T KOG4649|consen    2 RWAVDLRKCVDA-------SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGN--------------------------LIWE   48 (354)
T ss_pred             ceeccchhhccC-------CcEEEecCCceEEEEecCCceEEEecCCCCc--------------------------EEee
Confidence            466666666521       1233445554567777778888877776653                          2342


Q ss_pred             cCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCe-EEEEEeCCCCEEEEEe-C
Q 005235          482 QHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLP-VSSVFHPTRSIFFVST-K  559 (707)
Q Consensus       482 ~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V-~~v~fspd~~~l~v~s-d  559 (707)
                      ..         ....|.+-+.- -|++++.|+..|   .+++.+..++... ..|...+.| ......+++.++..++ |
T Consensus        49 ~i---------lg~RiE~sa~v-vgdfVV~GCy~g---~lYfl~~~tGs~~-w~f~~~~~vk~~a~~d~~~glIycgshd  114 (354)
T KOG4649|consen   49 AI---------LGVRIECSAIV-VGDFVVLGCYSG---GLYFLCVKTGSQI-WNFVILETVKVRAQCDFDGGLIYCGSHD  114 (354)
T ss_pred             hh---------hCceeeeeeEE-ECCEEEEEEccC---cEEEEEecchhhe-eeeeehhhhccceEEcCCCceEEEecCC
Confidence            21         11222221111 478899999988   9999999999666 566222222 2345678899999998 9


Q ss_pred             CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235          560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD  610 (707)
Q Consensus       560 g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~  610 (707)
                      ++.+..|..+..++.+.+.+.+...+-++.|....|.+++..|.|.--...
T Consensus       115 ~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  115 GNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             CcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence            999999999999999988776666677788855566666666766554444

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.87  E-value=1.3  Score=50.80  Aligned_cols=191  Identities=13%  Similarity=0.100  Sum_probs=109.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCC--cEEE----------EEEccCCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGE--AIQY----------VAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR  456 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~--~V~~----------v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~  456 (707)
                      ..+|.++.++.|.-.|..||+.+..+....  .+..          +++. ++  .+++++.++.|.-+|..++..    
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~--~v~v~t~dg~l~ALDa~TGk~----  142 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DG--KVFFGTLDARLVALDAKTGKV----  142 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CC--EEEEEcCCCEEEEEECCCCCE----
Confidence            578888888999999999999998876521  1211          1222 22  577778888888888877743    


Q ss_pred             cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEE-EEEcCCCCEEEEEeCC---CCccEEEEEECCCCcee
Q 005235          457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS-VEWHRRGDYLSTVMPA---GESRAIFMHQLSKKLSH  532 (707)
Q Consensus       457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~-v~~sp~g~~lat~s~d---g~~~~V~Iwdl~~~~~~  532 (707)
                                            +|........    ....+.+ -... ++ .+++++..   +..+.|..+|..+++..
T Consensus       143 ----------------------~W~~~~~~~~----~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       143 ----------------------VWSKKNGDYK----AGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLV  194 (527)
T ss_pred             ----------------------Eeeccccccc----ccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCcee
Confidence                                  3332211000    0000100 0000 22 33333211   01236777777766655


Q ss_pred             eeee---cc-----------------------------CCCeE-EEEEeCCCCEEEEEe-C-----C-----------eE
Q 005235          533 RIPF---KL-----------------------------HGLPV-SSVFHPTRSIFFVST-K-----K-----------NI  562 (707)
Q Consensus       533 ~~~~---~~-----------------------------~~~V~-~v~fspd~~~l~v~s-d-----g-----------~I  562 (707)
                       -.+   ..                             .+.+. .+++.|...++++++ .     +           .|
T Consensus       195 -W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~  273 (527)
T TIGR03075       195 -WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI  273 (527)
T ss_pred             -EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence             332   10                             11111 346666666777655 1     2           67


Q ss_pred             EEEECCCCeEEEEEeCCCCC---------eEEEEEcCCCC---EEEEEECCCcEEEEECCCCCcce
Q 005235          563 RVYDLLKQRLIKKLETGLKE---------VSSIAIHPAGD---NLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       563 ~iwDl~~~~~~~~l~~~~~~---------I~sl~~spdg~---~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                      .-.|+.+|+....++.....         ..-+.+..+|.   .|+.++.+|.++++|..++ +++
T Consensus       274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~i  338 (527)
T TIGR03075       274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG-KLL  338 (527)
T ss_pred             EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC-cee
Confidence            88899999988777642211         22233434665   7889999999999999987 443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>smart00320 WD40 WD40 repeats

Probab=96.85  E-value=0.0027  Score=42.75  Aligned_cols=37  Identities=35%  Similarity=0.602  Sum_probs=32.6

Q ss_pred             ceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          666 PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       666 pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      ++..+..|...    |.++.|++.+.++++++.|+.|++|+
T Consensus         4 ~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGP----VTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCc----eeEEEECCCCCEEEEecCCCeEEEcC
Confidence            35667778776    99999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=96.84  E-value=0.0038  Score=41.96  Aligned_cols=39  Identities=31%  Similarity=0.491  Sum_probs=34.4

Q ss_pred             CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                      ++++..+..|...|.++.|++.+..+++|+.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667778888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.79  E-value=0.33  Score=56.26  Aligned_cols=147  Identities=10%  Similarity=0.083  Sum_probs=85.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC---------CccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEE--
Q 005235          496 MVSSVEWHRRGDYLSTVMPAG---------ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRV--  564 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg---------~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~i--  564 (707)
                      ..+.-.|+|+|..|++.+...         ..+.+.+..+..+... .  ...+.|..+.|+|||..++...++.|.+  
T Consensus       398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~-~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~  474 (591)
T PRK13616        398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVA-S--RVPGPISELQLSRDGVRAAMIIGGKVYLAV  474 (591)
T ss_pred             CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhh-h--ccCCCcCeEEECCCCCEEEEEECCEEEEEE
Confidence            377889999999888876431         1123333344333322 1  2356799999999999998877888877  


Q ss_pred             -EECCCCeE-E---EEEeCCCC-CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec--CCCCEEEEEEcCCCC
Q 005235          565 -YDLLKQRL-I---KKLETGLK-EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC--HPKDITNVAFHRSYP  636 (707)
Q Consensus       565 -wDl~~~~~-~---~~l~~~~~-~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~--h~~~I~~vafspdg~  636 (707)
                       -....|.. +   ..+..... .+.+++|.+++.++ ++..++...+|-+...+.....+..  ....+.+|+-++. .
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~  552 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-T  552 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-e
Confidence             44344431 1   11322223 36889999988854 5555554445544433222222233  2566777777763 3


Q ss_pred             EEEEEeCCCcEE
Q 005235          637 LFASCSDDCTAY  648 (707)
Q Consensus       637 llaSgs~Dg~I~  648 (707)
                       ++....+|.+.
T Consensus       553 -iyv~~~~g~~~  563 (591)
T PRK13616        553 -VYVTDARAVLQ  563 (591)
T ss_pred             -EEEEcCCceEE
Confidence             44445566443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.77  E-value=1  Score=53.28  Aligned_cols=301  Identities=10%  Similarity=0.083  Sum_probs=157.0

Q ss_pred             CCCcEEEEEeCCCcEEEEeCC-CCeEEEE--Eec-----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch----
Q 005235          386 VACYLEYKGSTDGTVRIWEVE-SGRCLRV--LEI-----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE----  453 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~-tg~~l~~--l~~-----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~----  453 (707)
                      .++.....|..+|.+...-+. +++.+..  ++.     .+-..|+..-++|  .+++++.-|.-.+..+.+....    
T Consensus       267 ~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~  344 (1096)
T KOG1897|consen  267 LQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV  344 (1096)
T ss_pred             CCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh
Confidence            345566677888887666555 5544333  111     4566888888999  7888887776667666553211    


Q ss_pred             --hc--ccccceeeeccc------------ccccCCCCcEEEEecCCccceE-Eecc--CCCeEEEE--EcCC-CCEEEE
Q 005235          454 --EQ--RRVKDLLHVETP------------TAPDDNMASIVSWLQHDKLDGI-RLRH--FKMVSSVE--WHRR-GDYLST  511 (707)
Q Consensus       454 --~~--~~~~~v~~~~~~------------~~~~~~d~~i~iW~~~~~~~~~-~~~h--~~~V~~v~--~sp~-g~~lat  511 (707)
                        +.  ..-.++..+..-            ...+..+|++++....-+-... ....  -..+..+.  +.++ .+||+.
T Consensus       345 ~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvl  424 (1096)
T KOG1897|consen  345 VILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVL  424 (1096)
T ss_pred             hhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEE
Confidence              00  011111111110            1223356777766443211110 1111  23444444  3332 125554


Q ss_pred             EeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeC-CCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEc
Q 005235          512 VMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHP-TRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIH  589 (707)
Q Consensus       512 ~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fsp-d~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~s  589 (707)
                      +-.+    .-++..+... ...... +.......+..|. .++.|+-.+...||+++-.  ..+..+... ..++....+
T Consensus       425 sf~~----eTrvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p-~~~ti~~~~  496 (1096)
T KOG1897|consen  425 SFIS----ETRVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP-GKITIGVVS  496 (1096)
T ss_pred             Eecc----ceEEEEEccc-eEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC-CceEEEEEe
Confidence            4433    3344444433 210111 2223333333332 3444555556678888754  233444433 345555555


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcceEEee--cCCCCEEEEEEcCCC------CEEEEEeCCCcEEEEecccccCCCCC
Q 005235          590 PAGDNLIVGSREGKLCWFDMDLSSKPYRVLK--CHPKDITNVAFHRSY------PLFASCSDDCTAYVFHGMVYSDLNQN  661 (707)
Q Consensus       590 pdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h~~~I~~vafspdg------~llaSgs~Dg~I~Vwd~~~~~Dl~~~  661 (707)
                      .+...+++++.++.+...++....  +....  .....|.|+.++|-|      +++|.|.++..+.+--.      ...
T Consensus       497 ~n~sqVvvA~~~~~l~y~~i~~~~--l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~------~pd  568 (1096)
T KOG1897|consen  497 ANASQVVVAGGGLALFYLEIEDGG--LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF------LPD  568 (1096)
T ss_pred             ecceEEEEecCccEEEEEEeeccc--eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE------CCC
Confidence            566677777777888888877653  22111  124678999999742      27888887776655421      111


Q ss_pred             CcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          662 PLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       662 ~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      -...+...+.+...+  +.|.-.+|--+..+|.++..||.+..|.
T Consensus       569 ~~~~~~~~l~~~~iP--RSIl~~~~e~d~~yLlvalgdG~l~~fv  611 (1096)
T KOG1897|consen  569 LILITHEQLSGEIIP--RSILLTTFEGDIHYLLVALGDGALLYFV  611 (1096)
T ss_pred             cceeeeeccCCCccc--hheeeEEeeccceEEEEEcCCceEEEEE
Confidence            111122223333222  3366677777788999999999887764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.62  E-value=0.047  Score=57.81  Aligned_cols=197  Identities=13%  Similarity=0.155  Sum_probs=113.6

Q ss_pred             EcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCC-CCeEEEEEec-----CCcE-EEEEEcc
Q 005235          355 LCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVE-SGRCLRVLEI-----GEAI-QYVAWNP  427 (707)
Q Consensus       355 l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~-tg~~l~~l~~-----~~~V-~~v~~sp  427 (707)
                      +.|...-.-+.+....++..+|-|-...-||....-+++-+.||++.-..+. .|+...+...     .+++ ..-++..
T Consensus       114 ~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~  193 (342)
T PF06433_consen  114 FTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR  193 (342)
T ss_dssp             ESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred             cCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence            3444333333344445556666666666688777778888999999988887 5666533221     2222 2334444


Q ss_pred             CCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc---eEEeccCCCeEEEEEcC
Q 005235          428 LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD---GIRLRHFKMVSSVEWHR  504 (707)
Q Consensus       428 dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~---~~~~~h~~~V~~v~~sp  504 (707)
                      .+. .++-.+..|.|+-.++......                      ...-|.+.+...   .-.   .+.-.-+++|+
T Consensus       194 ~~~-~~~F~Sy~G~v~~~dlsg~~~~----------------------~~~~~~~~t~~e~~~~Wr---PGG~Q~~A~~~  247 (342)
T PF06433_consen  194 DGG-RLYFVSYEGNVYSADLSGDSAK----------------------FGKPWSLLTDAEKADGWR---PGGWQLIAYHA  247 (342)
T ss_dssp             TTT-EEEEEBTTSEEEEEEETTSSEE----------------------EEEEEESS-HHHHHTTEE---E-SSS-EEEET
T ss_pred             CCC-eEEEEecCCEEEEEeccCCccc----------------------ccCcccccCccccccCcC---Ccceeeeeecc
Confidence            332 4555777788777776543211                      123343321110   001   12233467777


Q ss_pred             CCCEEEEEeCCC-------CccEEEEEECCCCceeeeeeccCCCeEEEEEeCCC-CEEEEEe--CCeEEEEECCCCeEEE
Q 005235          505 RGDYLSTVMPAG-------ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTR-SIFFVST--KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       505 ~g~~lat~s~dg-------~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~-~~l~v~s--dg~I~iwDl~~~~~~~  574 (707)
                      ..+.|.+....+       ....|.++|+.+++.. ..+.....+.+++.+.+. ++|++.+  ++.|.+||..+++.+.
T Consensus       248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv-~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV-ARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE-EEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE-EEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            666555544332       3458889999999887 666555668899998865 5776654  6899999999999998


Q ss_pred             EEeC
Q 005235          575 KLET  578 (707)
Q Consensus       575 ~l~~  578 (707)
                      ++..
T Consensus       327 ~~~~  330 (342)
T PF06433_consen  327 SIEQ  330 (342)
T ss_dssp             EE--
T ss_pred             ehhc
Confidence            8874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.49  E-value=1.5  Score=46.44  Aligned_cols=183  Identities=14%  Similarity=0.146  Sum_probs=87.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRL  572 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~  572 (707)
                      ..+|.|..+ ..+++|. .    .+.++....+..- ..+    ...+....+....++..++++..|.|..= ...++.
T Consensus        64 l~~I~f~~~-~g~ivG~-~----g~ll~T~DgG~tW-~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~t  135 (302)
T PF14870_consen   64 LNSISFDGN-EGWIVGE-P----GLLLHTTDGGKTW-ERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKT  135 (302)
T ss_dssp             EEEEEEETT-EEEEEEE-T----TEEEEESSTTSS--EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSS
T ss_pred             EEEEEecCC-ceEEEcC-C----ceEEEecCCCCCc-EEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCC
Confidence            456777543 3444443 2    3556666666544 222    22344445554444443444334443321 222322


Q ss_pred             E-EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          573 I-KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-KCHPKDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       573 ~-~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      - .......+.+..+..+++|.++++++....+.-||--.  ...... +.-...|.++.|+|++.+.+.+ ..|.|++=
T Consensus       136 W~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s  212 (302)
T PF14870_consen  136 WQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFS  212 (302)
T ss_dssp             EEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEE
T ss_pred             eeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEEe-CCcEEEEc
Confidence            2 22334446688888999999999887665566777542  222222 2246789999999998876655 77877776


Q ss_pred             ecccccCCCCCCcccceEEeeCCC---CCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235          651 HGMVYSDLNQNPLIVPLEILRGHT---SSNGRGVMDCKFHPRQPWLFTAGADSVI  702 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl~~l~gh~---~~~~~gV~~l~fspdg~~L~s~g~Dg~I  702 (707)
                      +...  +         ...+..+.   ...+.++.+++|.+++...++|+. |++
T Consensus       213 ~~~~--~---------~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l  255 (302)
T PF14870_consen  213 DDPD--D---------GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL  255 (302)
T ss_dssp             E-TT--E---------EEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E
T ss_pred             cCCC--C---------ccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE
Confidence            4110  0         11111110   112345999999999877776654 444

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.48  E-value=0.15  Score=52.62  Aligned_cols=154  Identities=14%  Similarity=0.038  Sum_probs=90.5

Q ss_pred             CeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE-CCCCCcceE
Q 005235          541 LPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD-MDLSSKPYR  617 (707)
Q Consensus       541 ~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD-l~~~~~~~~  617 (707)
                      .+.++++++++..+++..  ++.-.+|-...+.....+... ..++.-.|+++|...++...+....++. ...+.....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g-~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG-GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC-CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688999999999877655  444444444443333333222 3688889999988887777666666663 222221111


Q ss_pred             EeecC-C-CCEEEEEEcCCCCEEEEEe---CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235          618 VLKCH-P-KDITNVAFHRSYPLFASCS---DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW  692 (707)
Q Consensus       618 ~l~~h-~-~~I~~vafspdg~llaSgs---~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~  692 (707)
                      .+... . ..|+++.+||||..+|...   .++.|.|=-+.-..+-....+..++.........    +.+++|.+++.+
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~----v~~v~W~~~~~L  179 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD----VTDVAWSDDSTL  179 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc----ceeeeecCCCEE
Confidence            22211 1 2799999999999777655   3456665533211111111222333333332333    999999999987


Q ss_pred             EEEEeCC
Q 005235          693 LFTAGAD  699 (707)
Q Consensus       693 L~s~g~D  699 (707)
                      ++.+...
T Consensus       180 ~V~~~~~  186 (253)
T PF10647_consen  180 VVLGRSA  186 (253)
T ss_pred             EEEeCCC
Confidence            7666543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.36  E-value=0.25  Score=54.34  Aligned_cols=195  Identities=12%  Similarity=0.130  Sum_probs=96.1

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .++|++++.|.=|  .++++..+|.+.|.|++........+...                          ..........
T Consensus        86 ~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~--------------------------~~~~~~~~~~  137 (395)
T PF08596_consen   86 QGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRE--------------------------SFLSKSSSSY  137 (395)
T ss_dssp             S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG----------------------------T-SS----
T ss_pred             CCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccc--------------------------cccccccccC
Confidence            7899999999888  45555568999999985542211111100                          0000112234


Q ss_pred             eEEEEEcC-----CC---CEEEEEeCCCCccEEEEEECCC---Cceeeeee-----ccCCCeEEEE-EeCC---------
Q 005235          497 VSSVEWHR-----RG---DYLSTVMPAGESRAIFMHQLSK---KLSHRIPF-----KLHGLPVSSV-FHPT---------  550 (707)
Q Consensus       497 V~~v~~sp-----~g---~~lat~s~dg~~~~V~Iwdl~~---~~~~~~~~-----~~~~~V~~v~-fspd---------  550 (707)
                      |+++.|+-     ++   -.+++|...|   .+.+|.+.-   +... ..+     .+.+.|..+. |+.+         
T Consensus       138 vt~ieF~vm~~~~D~ySSi~L~vGTn~G---~v~~fkIlp~~~g~f~-v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~  213 (395)
T PF08596_consen  138 VTSIEFSVMTLGGDGYSSICLLVGTNSG---NVLTFKILPSSNGRFS-VQFAGATTNHDSPILSIIPINADTGESALATI  213 (395)
T ss_dssp             EEEEEEEEEE-TTSSSEEEEEEEEETTS---EEEEEEEEE-GGG-EE-EEEEEEE--SS----EEEEEETTT--B-B-BH
T ss_pred             eeEEEEEEEecCCCcccceEEEEEeCCC---CEEEEEEecCCCCceE-EEEeeccccCCCceEEEEEEECCCCCcccCch
Confidence            44555531     22   2455555555   666665531   1111 111     2334444433 2211         


Q ss_pred             ------------CCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEE-----cCCCCEEEEEECCCcEEEEECCCCC
Q 005235          551 ------------RSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAI-----HPAGDNLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       551 ------------~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~-----spdg~~L~sGs~Dg~I~vwDl~~~~  613 (707)
                                  ..+++++++..+|++.+.+.+...+.....-...++.+     ...+..|++-..+|.|++|.+-.- 
T Consensus       214 ~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-  292 (395)
T PF08596_consen  214 SAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-  292 (395)
T ss_dssp             HHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred             hHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-
Confidence                        12566777999999999988777665522122333444     235677888899999999999755 


Q ss_pred             cceEEeecCC----CCEEEEEEcCCCCEEEEEeCC
Q 005235          614 KPYRVLKCHP----KDITNVAFHRSYPLFASCSDD  644 (707)
Q Consensus       614 ~~~~~l~~h~----~~I~~vafspdg~llaSgs~D  644 (707)
                      +.+..+....    ..+....|+++|..|+-.+..
T Consensus       293 kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  293 KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             -EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred             hHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence            5666665432    234456778889877766543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.014  Score=65.00  Aligned_cols=93  Identities=16%  Similarity=0.179  Sum_probs=74.2

Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE-EEEEeCCCCEEEEEe-CCeEEEEECCC
Q 005235          493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV-SSVFHPTRSIFFVST-KKNIRVYDLLK  569 (707)
Q Consensus       493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~-~v~fspd~~~l~v~s-dg~I~iwDl~~  569 (707)
                      ....|.-+.|+|.-+.+|++..+|   .|.++.++ .+.. .++ -+...++ +++|.|||++|++|- ||+|++.|..+
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~g---elli~R~n-~qRl-wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKG---ELLIHRLN-WQRL-WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             cccceEEEEEcCccchhheeccCC---cEEEEEec-ccee-EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            355688899999999999999988   99999998 4433 556 3555555 999999999999998 99999999999


Q ss_pred             CeEEEEE-eCCCCCeEEEEEcC
Q 005235          570 QRLIKKL-ETGLKEVSSIAIHP  590 (707)
Q Consensus       570 ~~~~~~l-~~~~~~I~sl~~sp  590 (707)
                      +..+... ..-...|+++-|++
T Consensus        94 ~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   94 GGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CCceeccccccccchheeeccc
Confidence            8777652 22335688888864

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=0.1  Score=57.37  Aligned_cols=150  Identities=12%  Similarity=0.123  Sum_probs=101.7

Q ss_pred             CCCcE-EEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCc------cEEEEEeCCeEEEEECCCCCchhcccc
Q 005235          386 VACYL-EYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPEL------PVLAVSVGQDVLILNTGLGNEEEQRRV  458 (707)
Q Consensus       386 ~~~~~-l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~------~lla~s~d~~V~lwd~~~~~~~~~~~~  458 (707)
                      .+.++ +.+|.....|+--|+++|+.+..|.....|+-+.+.|+...      .-+.+-.++.|.-||+.....      
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------  416 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------  416 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc------
Confidence            34444 44566667789999999999999999777999999987632      234455566777777653211      


Q ss_pred             cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K  537 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~  537 (707)
                                       .+..|.-.     ..........|.+-..+ .++|+|+.+|   .|++||-...+.. ..| +
T Consensus       417 -----------------~kl~~~q~-----kqy~~k~nFsc~aTT~s-G~IvvgS~~G---dIRLYdri~~~AK-TAlPg  469 (644)
T KOG2395|consen  417 -----------------NKLAVVQS-----KQYSTKNNFSCFATTES-GYIVVGSLKG---DIRLYDRIGRRAK-TALPG  469 (644)
T ss_pred             -----------------ceeeeeec-----cccccccccceeeecCC-ceEEEeecCC---cEEeehhhhhhhh-hcccc
Confidence                             11122100     00011223344444434 4899999998   9999998444333 556 7


Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCCeEEEEECC
Q 005235          538 LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLL  568 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~  568 (707)
                      ...+|..|..+.+|++|++.++.++.+.++.
T Consensus       470 LG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  470 LGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             cCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            8889999999999999999999999988864

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.26  E-value=0.29  Score=54.78  Aligned_cols=150  Identities=12%  Similarity=0.122  Sum_probs=93.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCC----C-CEEEEEeCCeEEEEECC
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPT----R-SIFFVSTKKNIRVYDLL  568 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd----~-~~l~v~sdg~I~iwDl~  568 (707)
                      -.++..++|. ||+.++-..---.++.+++-|     .  ..++.-..|..+.|.|-    . .+||+-....|.||-+.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd-----s--~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD-----S--KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC-----c--cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            3578889997 666555433100000221111     1  22344567899999985    2 46777779999999986


Q ss_pred             C-----CeEEEEEeCCCC---C--eEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEE
Q 005235          569 K-----QRLIKKLETGLK---E--VSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLF  638 (707)
Q Consensus       569 ~-----~~~~~~l~~~~~---~--I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ll  638 (707)
                      .     ++.+..-..+-+   +  ...+.|||....|++-.....-.++++...+..++.=-...+-|.|.+|.+||+.|
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence            2     333332222111   1  24578999999998887776667777776555555433456789999999999966


Q ss_pred             EEEeC-CCcEEEEe
Q 005235          639 ASCSD-DCTAYVFH  651 (707)
Q Consensus       639 aSgs~-Dg~I~Vwd  651 (707)
                      +.+-. .=.-+|||
T Consensus       171 VVAvGSsLHSyiWd  184 (671)
T PF15390_consen  171 VVAVGSSLHSYIWD  184 (671)
T ss_pred             EEEeCCeEEEEEec
Confidence            65532 33467885

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.05  E-value=0.35  Score=42.83  Aligned_cols=100  Identities=18%  Similarity=0.240  Sum_probs=65.9

Q ss_pred             eEEEEEcC---CC-CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC
Q 005235          583 VSSIAIHP---AG-DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL  658 (707)
Q Consensus       583 I~sl~~sp---dg-~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl  658 (707)
                      |++|++..   +| +.|++||.|..|++|+-+   ..+..+.- ...|++++-... ..|+.+..+|+|-||+..     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-----   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS-----   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc-----
Confidence            55665543   33 689999999999999865   45666653 456777776665 579999999999999532     


Q ss_pred             CCCCcccceEEeeCCCCCCCCCeeEEEEcC-CC---CEEEEEeCCCcEE
Q 005235          659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHP-RQ---PWLFTAGADSVIR  703 (707)
Q Consensus       659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp-dg---~~L~s~g~Dg~Ir  703 (707)
                        ..    +-..+.-..     +.++++.. ++   +-|++|-.+|.|-
T Consensus        72 --~R----lWRiKSK~~-----~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 --QR----LWRIKSKNQ-----VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --ce----eeeeccCCC-----eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              11    222222211     56665543 32   3688888888874

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.00  E-value=0.0086  Score=59.13  Aligned_cols=139  Identities=17%  Similarity=0.158  Sum_probs=81.8

Q ss_pred             EEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEE-EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCE-EEEE
Q 005235          553 IFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSS-IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI-TNVA  630 (707)
Q Consensus       553 ~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~s-l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I-~~va  630 (707)
                      +++++.++.|+-++++..+....-.   ..+.+ ..+---+..|++|+.+|.|.+|..............-...| ..|.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse---~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSE---RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhh---hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            3444558899888887643221111   11111 12222357899999999999998863322111111112222 2233


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC-CCCCCCeeEEEEcCCCCEEEEE--eCCCcEEEEeC
Q 005235          631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT-SSNGRGVMDCKFHPRQPWLFTA--GADSVIRLYCH  707 (707)
Q Consensus       631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~-~~~~~gV~~l~fspdg~~L~s~--g~Dg~IrlWdl  707 (707)
                      --.++.+.++++.||.|+.|++.      .+..   +.....|. ..    +..+..+..+.+|+++  |.|..++.|++
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~------p~k~---~g~~g~h~~~~----~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIK------PNKV---LGYVGQHNFES----GEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             cccccceeEEeccCCceeeeccc------cCce---eeeeccccCCC----cceeEEecCCceEEeeccccchhhhhcch
Confidence            33455688899999999999653      2222   34445555 33    5666666677788888  88888888875

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.98  E-value=0.3  Score=53.80  Aligned_cols=134  Identities=10%  Similarity=0.225  Sum_probs=91.8

Q ss_pred             CCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-------EEEEEECCCcEEEEECCCCCc-ceEEe
Q 005235          550 TRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD-------NLIVGSREGKLCWFDMDLSSK-PYRVL  619 (707)
Q Consensus       550 d~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~-------~L~sGs~Dg~I~vwDl~~~~~-~~~~l  619 (707)
                      +..+|+...  ...|+-.|+..|+.+.....+.. |+-+.+.|++.       .-++|-.+..|+-||++-.+. .+...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            444555433  67899999999999999888755 88888988763       235677889999999986543 23333


Q ss_pred             ecCC----CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235          620 KCHP----KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT  695 (707)
Q Consensus       620 ~~h~----~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s  695 (707)
                      ++|.    ....|.+-..+| ++|.||.+|-|++|+-     +....    -..|.|-...    |..|..+.+|+||+.
T Consensus       423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-----i~~~A----KTAlPgLG~~----I~hVdvtadGKwil~  488 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-----IGRRA----KTALPGLGDA----IKHVDVTADGKWILA  488 (644)
T ss_pred             eccccccccccceeeecCCc-eEEEeecCCcEEeehh-----hhhhh----hhcccccCCc----eeeEEeeccCcEEEE
Confidence            3332    223444444444 7899999999999963     11111    2235555555    999999999999977


Q ss_pred             EeC
Q 005235          696 AGA  698 (707)
Q Consensus       696 ~g~  698 (707)
                      .+.
T Consensus       489 Tc~  491 (644)
T KOG2395|consen  489 TCK  491 (644)
T ss_pred             ecc
Confidence            664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=0.023  Score=66.83  Aligned_cols=104  Identities=17%  Similarity=0.240  Sum_probs=75.1

Q ss_pred             CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe
Q 005235          591 AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL  670 (707)
Q Consensus       591 dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l  670 (707)
                      .+..+++|+..|.+..+|+...-.+...-..-.++|++++|+.+|.+++.|-.+|.|.+||+      ..++.   ++.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~------~~~k~---l~~i  168 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDM------HRAKI---LKVI  168 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEc------cCCcc---eeee
Confidence            45679999999999999997542332222233578999999999999999999999999954      44443   5555


Q ss_pred             eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       671 ~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .-|..+ ..||..+.|..++..++++..-|.  +|.
T Consensus       169 ~e~~ap-~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  169 TEHGAP-VTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             eecCCc-cceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            555443 234777777777777888877776  554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.89  E-value=2  Score=50.93  Aligned_cols=31  Identities=26%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             CCCeEEEEEeCC---CCEEEEEe-CCeEEEEECCC
Q 005235          539 HGLPVSSVFHPT---RSIFFVST-KKNIRVYDLLK  569 (707)
Q Consensus       539 ~~~V~~v~fspd---~~~l~v~s-dg~I~iwDl~~  569 (707)
                      ...|..+.|||.   +..|++-+ |+++|+||+..
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            345677788875   35666654 88888888765

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.81  E-value=0.56  Score=41.51  Aligned_cols=100  Identities=18%  Similarity=0.143  Sum_probs=66.5

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeE
Q 005235          497 VSSVEWHR---RG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRL  572 (707)
Q Consensus       497 V~~v~~sp---~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~  572 (707)
                      |+++++..   +| +.|++|+.|.   .|+||+-.  ... ..+...+.|++++-...+.+.+.-.+|+|-+|+-  ...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~---~IRvf~~~--e~~-~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDF---EIRVFKGD--EIV-AEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCc---EEEEEeCC--cEE-EEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cce
Confidence            55666544   33 5899999988   99999854  333 5556677888888877755444444899999985  334


Q ss_pred             EEEEeCCCCCeEEEEE-cCCC---CEEEEEECCCcEE
Q 005235          573 IKKLETGLKEVSSIAI-HPAG---DNLIVGSREGKLC  605 (707)
Q Consensus       573 ~~~l~~~~~~I~sl~~-spdg---~~L~sGs~Dg~I~  605 (707)
                      +..++.... +.++++ ..+|   .-|++|-.+|+|-
T Consensus        74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            445554434 555544 3333   4789999999874

>PRK10115 protease 2; Provisional

Probab=95.75  E-value=3.7  Score=48.79  Aligned_cols=197  Identities=8%  Similarity=0.014  Sum_probs=104.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCc--cEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-C------CeEEEEE
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGES--RAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-K------KNIRVYD  566 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~--~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-d------g~I~iwD  566 (707)
                      .+..+.|+|+|++|+.+...+++  ..|.+.|+.++......+...  -..++|++++..|+.+. +      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            45678899999999887655433  468888998775331233221  15699999998777654 2      3688889


Q ss_pred             CCCC--eEEEEEeCCCCCeE-EEEEcCCCCEEEEEECC---CcEEEEECCCC-CcceEEeecCCCCEEEEEEcCCCCEEE
Q 005235          567 LLKQ--RLIKKLETGLKEVS-SIAIHPAGDNLIVGSRE---GKLCWFDMDLS-SKPYRVLKCHPKDITNVAFHRSYPLFA  639 (707)
Q Consensus       567 l~~~--~~~~~l~~~~~~I~-sl~~spdg~~L~sGs~D---g~I~vwDl~~~-~~~~~~l~~h~~~I~~vafspdg~lla  639 (707)
                      +.++  +....+........ ++..+.++.++++.+..   +.+.+++.... ..+...+..-......+. +..+.+++
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~  284 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL  284 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence            9887  33334443333333 33445588877665443   46888886432 122222222223333332 33333333


Q ss_pred             EEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          640 SCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       640 Sgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      .... ...-+|..+    ++.....   ...+..+..  ...|..+.++ ...++++...+|.-+++
T Consensus       285 ~tn~~~~~~~l~~~----~~~~~~~---~~~l~~~~~--~~~i~~~~~~-~~~l~~~~~~~g~~~l~  341 (686)
T PRK10115        285 RSNRHGKNFGLYRT----RVRDEQQ---WEELIPPRE--NIMLEGFTLF-TDWLVVEERQRGLTSLR  341 (686)
T ss_pred             EEcCCCCCceEEEe----cCCCccc---CeEEECCCC--CCEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            3322 224444433    2221111   233334421  1127777776 33455666667765554

>PRK10115 protease 2; Provisional

Probab=95.71  E-value=6.4  Score=46.81  Aligned_cols=151  Identities=9%  Similarity=0.007  Sum_probs=83.2

Q ss_pred             EEEEEcCCCCEEEEEeCCC---CccEEEEEECCCCceee-eee-ccCCCeE-EEEEeCCCCEEEEEe----CCeEEEEEC
Q 005235          498 SSVEWHRRGDYLSTVMPAG---ESRAIFMHQLSKKLSHR-IPF-KLHGLPV-SSVFHPTRSIFFVST----KKNIRVYDL  567 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~-~v~fspd~~~l~v~s----dg~I~iwDl  567 (707)
                      ..++|+++++.|+.+..+.   ....|..|++.+..... ..+ ....... .+..+.++.++++.+    ++.+.+|+.
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            4589999998777665532   23588899998884321 334 3333333 333344788776643    467999995


Q ss_pred             C--CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCCcceEEeecCC--CCEEEEEEcCCCCEEE
Q 005235          568 L--KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLSSKPYRVLKCHP--KDITNVAFHRSYPLFA  639 (707)
Q Consensus       568 ~--~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~~~~~~~l~~h~--~~I~~vafspdg~lla  639 (707)
                      .  ++.....+.........+. +.. ..|..-+..    ..|...++... .....+..+.  ..|..+.++ ...+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~-~~~l~~  330 (686)
T PRK10115        255 ELADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLF-TDWLVV  330 (686)
T ss_pred             cCCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEE-CCEEEE
Confidence            3  3433222322223333332 333 444443332    23444455422 2234555552  368888887 345777


Q ss_pred             EEeCCCcEEEEec
Q 005235          640 SCSDDCTAYVFHG  652 (707)
Q Consensus       640 Sgs~Dg~I~Vwd~  652 (707)
                      +...+|.-+++-+
T Consensus       331 ~~~~~g~~~l~~~  343 (686)
T PRK10115        331 EERQRGLTSLRQI  343 (686)
T ss_pred             EEEeCCEEEEEEE
Confidence            7778887777643

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.63  E-value=0.73  Score=47.58  Aligned_cols=147  Identities=17%  Similarity=0.220  Sum_probs=92.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE-CCCCeEE
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYD-LLKQRLI  573 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD-l~~~~~~  573 (707)
                      .+.+.+++++|..+|..........+.++......   ..+.....+....|++++...++.. +...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~---~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV---RPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc---eeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            68899999999988887722223477776654332   2222334778889999987777665 55566663 3333221


Q ss_pred             -EEEeC-CC-CCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCC--C------cceEEeecCCCCEEEEEEcCCCCEEE
Q 005235          574 -KKLET-GL-KEVSSIAIHPAGDNLIVGS---REGKLCWFDMDLS--S------KPYRVLKCHPKDITNVAFHRSYPLFA  639 (707)
Q Consensus       574 -~~l~~-~~-~~I~sl~~spdg~~L~sGs---~Dg~I~vwDl~~~--~------~~~~~l~~h~~~I~~vafspdg~lla  639 (707)
                       ..+.. .. ..|+++.+||||..++.-.   .++.|.+--+...  .      .++.........+++++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             11221 11 2799999999999887765   3467776654321  1      22233333356799999999999877


Q ss_pred             EEeCCC
Q 005235          640 SCSDDC  645 (707)
Q Consensus       640 Sgs~Dg  645 (707)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.58  E-value=2.2  Score=45.20  Aligned_cols=155  Identities=15%  Similarity=0.170  Sum_probs=78.3

Q ss_pred             ccCCCeEEEEEeCCCCEEEEEeCCeE-EEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235          537 KLHGLPVSSVFHPTRSIFFVSTKKNI-RVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP  615 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~sdg~I-~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~  615 (707)
                      ...+.+..+..+++|.+++++..|.+ .-||--...-...-......|.+|.|.|++.+.+++ ..|.|+.=+.......
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            66678899999999999999986655 466654322222222345789999999998776655 7888888772211111


Q ss_pred             eE----EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235          616 YR----VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP  691 (707)
Q Consensus       616 ~~----~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~  691 (707)
                      ..    .+..-.-.+..++|.++..++|+|+ .|++.+=       ...+...........-...    +..+.|.+. .
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~S-------~DgGktW~~~~~~~~~~~n----~~~i~f~~~-~  287 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLVS-------TDGGKTWQKDRVGENVPSN----LYRIVFVNP-D  287 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEEE-------SSTTSS-EE-GGGTTSSS-------EEEEEET-T
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEEe-------CCCCccceECccccCCCCc----eEEEEEcCC-C
Confidence            11    1111223488999999988888765 4544442       1122221111111111112    778888755 4


Q ss_pred             EEEEEeCCCcEEEE
Q 005235          692 WLFTAGADSVIRLY  705 (707)
Q Consensus       692 ~L~s~g~Dg~IrlW  705 (707)
                      .-+..|.+|.|.-|
T Consensus       288 ~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  288 KGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEEE-STTEEEEE
T ss_pred             ceEEECCCcEEEEe
Confidence            56666778988766

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.51  E-value=3.7  Score=45.06  Aligned_cols=195  Identities=13%  Similarity=0.112  Sum_probs=90.6

Q ss_pred             EEEEEeCCCcEEEEeCCC----CeEEEEEec--------CCcEEEEEEccCCCccEEEEEeC------CeEEEEECCCCC
Q 005235          390 LEYKGSTDGTVRIWEVES----GRCLRVLEI--------GEAIQYVAWNPLPELPVLAVSVG------QDVLILNTGLGN  451 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~t----g~~l~~l~~--------~~~V~~v~~spdg~~~lla~s~d------~~V~lwd~~~~~  451 (707)
                      +++-|=..+.|.|.|+.+    -+..++++.        -.....+.--|+|+ .++++-.+      |.+.++|-++. 
T Consensus        90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~~tf-  167 (461)
T PF05694_consen   90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDGETF-  167 (461)
T ss_dssp             EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred             EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcCccc-
Confidence            444444778899999884    456666664        12333444456773 33333221      23455553332 


Q ss_pred             chhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC---------------
Q 005235          452 EEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG---------------  516 (707)
Q Consensus       452 ~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg---------------  516 (707)
                                             .....|.....       ...--..+-|.|..+.++|.....               
T Consensus       168 -----------------------~v~g~We~~~~-------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  168 -----------------------EVKGRWEKDRG-------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             ------------------------EEEE--SB-T-------T------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             -----------------------cccceeccCCC-------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence                                   12234433211       122335667778777777765422               


Q ss_pred             --CccEEEEEECCCCceeeeee--ccCC-CeEEEEEe--CCCCEEEEEe--CCeEEEEEC-CCCe----EEEEEeCC---
Q 005235          517 --ESRAIFMHQLSKKLSHRIPF--KLHG-LPVSSVFH--PTRSIFFVST--KKNIRVYDL-LKQR----LIKKLETG---  579 (707)
Q Consensus       517 --~~~~V~Iwdl~~~~~~~~~~--~~~~-~V~~v~fs--pd~~~l~v~s--dg~I~iwDl-~~~~----~~~~l~~~---  579 (707)
                        ..+++.+||+.+++.. +.+  +..+ .+..|.|.  |+..+-++++  ..+|..|-- ..++    .+-.+...   
T Consensus       218 ~~yG~~l~vWD~~~r~~~-Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~  296 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLL-QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE  296 (461)
T ss_dssp             H-S--EEEEEETTTTEEE-EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred             ccccCeEEEEECCCCcEe-eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence              2469999999999988 777  3333 45567774  5566766655  555555543 4442    22222110   


Q ss_pred             --------------CCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceE
Q 005235          580 --------------LKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYR  617 (707)
Q Consensus       580 --------------~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~  617 (707)
                                    ..-|+.|.+|.|.++|.+.+ ..|.|+-||+.....|..
T Consensus       297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl  349 (461)
T PF05694_consen  297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL  349 (461)
T ss_dssp             SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred             cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence                          13478999999999997765 589999999987655543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.45  E-value=0.45  Score=55.11  Aligned_cols=220  Identities=12%  Similarity=0.102  Sum_probs=113.6

Q ss_pred             CCCCcEEEEEeCCC------cEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeC-C-----eEEEEECCCC
Q 005235          385 PVACYLEYKGSTDG------TVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVG-Q-----DVLILNTGLG  450 (707)
Q Consensus       385 p~~~~~l~sgs~Dg------tVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d-~-----~V~lwd~~~~  450 (707)
                      +....+++.||.++      +|..+|..++.-......  .....+++...+.  .+++||.+ +     ++..||+.+.
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~--lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGK--LYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCE--EEEEccccCCCcccceEEEecCCCC
Confidence            44556777787773      677888887743322222  3344555665553  55566666 2     3445554332


Q ss_pred             CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC--ccEEEEEECCC
Q 005235          451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE--SRAIFMHQLSK  528 (707)
Q Consensus       451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~--~~~V~Iwdl~~  528 (707)
                                                  .|..-....  ...+...+..    -+|...|+|+.||.  ..+|-.||..+
T Consensus       360 ----------------------------~W~~~a~M~--~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~  405 (571)
T KOG4441|consen  360 ----------------------------QWTPVAPMN--TKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVT  405 (571)
T ss_pred             ----------------------------ceeccCCcc--CccccceeEE----ECCEEEEEeccccccccccEEEecCCC
Confidence                                        142210000  0011111111    16788888888872  34788888877


Q ss_pred             Cceeeeee-ccCCCeEEEEE-eCCCCEEEEEe-C------CeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEE
Q 005235          529 KLSHRIPF-KLHGLPVSSVF-HPTRSIFFVST-K------KNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIV  597 (707)
Q Consensus       529 ~~~~~~~~-~~~~~V~~v~f-spd~~~l~v~s-d------g~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~s  597 (707)
                      ....  .. .......+.+. .-+|.+.++|+ +      .+|..||..+++-  +..+...........+  ++...++
T Consensus       406 ~~W~--~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvv  481 (571)
T KOG4441|consen  406 NKWT--PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVV  481 (571)
T ss_pred             Cccc--ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEE
Confidence            6653  22 12112222222 22455555554 3      4688999887743  2223222222222222  5778888


Q ss_pred             EECCCc-----EEEEECCCCCcceEEee---cCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235          598 GSREGK-----LCWFDMDLSSKPYRVLK---CHPKDITNVAFHRSYPLFASCSDDCTAY  648 (707)
Q Consensus       598 Gs~Dg~-----I~vwDl~~~~~~~~~l~---~h~~~I~~vafspdg~llaSgs~Dg~I~  648 (707)
                      |+.|+.     |..||..+..  ...+.   .....+..+++  ++.+.+.|+.||.-.
T Consensus       482 GG~~~~~~~~~VE~ydp~~~~--W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~  536 (571)
T KOG4441|consen  482 GGFDGTSALSSVERYDPETNQ--WTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNN  536 (571)
T ss_pred             CCccCCCccceEEEEcCCCCc--eeEcccCccccccccEEEE--CCEEEEEecccCccc
Confidence            888873     6778887642  22222   22222222222  567888888877433

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.43  E-value=0.41  Score=55.26  Aligned_cols=128  Identities=15%  Similarity=0.204  Sum_probs=85.5

Q ss_pred             EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEe
Q 005235          574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFH--RSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafs--pdg~llaSgs~Dg~I~Vwd  651 (707)
                      .++..+...++-+.-+.-+...++.+....+.|||...+.-.+..--.....|.++.|.  |+++.+.+.|-...|.++-
T Consensus        23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            44555555666666666666666665666799999987632222222346789999885  6888888888899999996


Q ss_pred             cccccCCCCCCcccceEEe--eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          652 GMVYSDLNQNPLIVPLEIL--RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       652 ~~~~~Dl~~~~~~~pl~~l--~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      -.-++-....|...+++.+  ..|+..   .|.+..|.++|..++.+|  +.+.|++
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h---~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPH---PIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCC---CccceeEecCCeEEEEeC--CEEEEEC
Confidence            5444444556666666655  344422   389999999998776665  3566654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.25  E-value=1.4  Score=45.35  Aligned_cols=104  Identities=13%  Similarity=0.057  Sum_probs=73.8

Q ss_pred             CCCeEEEEEeCCCCE-EEEEe--CCeEEEEECCCCeEEEEEeCCCCC--eEEEEEcCCCCEEEEEEC-----CCcEEEEE
Q 005235          539 HGLPVSSVFHPTRSI-FFVST--KKNIRVYDLLKQRLIKKLETGLKE--VSSIAIHPAGDNLIVGSR-----EGKLCWFD  608 (707)
Q Consensus       539 ~~~V~~v~fspd~~~-l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~--I~sl~~spdg~~L~sGs~-----Dg~I~vwD  608 (707)
                      ......++|||..+. ++.+-  .....++|....+...++....+.  --.=.|||+|.+|...-.     .|.|-|||
T Consensus        67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd  146 (366)
T COG3490          67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD  146 (366)
T ss_pred             ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence            344556889997665 44444  356788999887655555432221  122369999999987643     36799999


Q ss_pred             CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235          609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs  642 (707)
                      .+..-..+..+..|.-.-..+.+.+||++|+.+.
T Consensus       147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             cccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            9876666777888887888999999999988764

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.07  E-value=0.076  Score=62.74  Aligned_cols=99  Identities=18%  Similarity=0.259  Sum_probs=72.7

Q ss_pred             CCEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEE
Q 005235          551 RSIFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITN  628 (707)
Q Consensus       551 ~~~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~  628 (707)
                      +..+++|+ .|.|-..|+... .+...-....++|++++|+.+|..++.|-.+|.|.+||+..+ ++++.+..|..+.++
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeeecCCccce
Confidence            44577777 588988887653 111222234478999999999999999999999999999976 788989888877766


Q ss_pred             EEEc---CCCCEEEEEeCCCcEEEEec
Q 005235          629 VAFH---RSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       629 vafs---pdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +-++   .++..+.++..-|.  +|..
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            6554   34556777766665  5543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.03  E-value=3  Score=43.26  Aligned_cols=156  Identities=13%  Similarity=0.127  Sum_probs=100.4

Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235          491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL  567 (707)
Q Consensus       491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl  567 (707)
                      .+....+.+++|+|+.+.|+++....   .-.|+=-..+... ..+  ..-...-.+.+..++.+.++-- ++.+.++.+
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p---~~iVElt~~Gdli-rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKP---AAIVELTKEGDLI-RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCC---ceEEEEecCCceE-EEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            34556699999999999888887655   4445544445544 433  4445566778877776666655 788888877


Q ss_pred             CCCeEEEE-------Ee---CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce--EEeecCC-------CCEEE
Q 005235          568 LKQRLIKK-------LE---TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY--RVLKCHP-------KDITN  628 (707)
Q Consensus       568 ~~~~~~~~-------l~---~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~--~~l~~h~-------~~I~~  628 (707)
                      ..+..+..       |.   ......-.++|+|....|+++-.-.-+.||.+..+...+  .....++       ..|.+
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            65522211       11   114557889999999999999888888887765332111  1111222       34678


Q ss_pred             EEEcCC-CCEEEEEeCCCcEEEE
Q 005235          629 VAFHRS-YPLFASCSDDCTAYVF  650 (707)
Q Consensus       629 vafspd-g~llaSgs~Dg~I~Vw  650 (707)
                      +.|++. +.+|+-+.+++.+.-.
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Ev  260 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEV  260 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEE
Confidence            889874 5566666677777776

>PRK13684 Ycf48-like protein; Provisional

Probab=95.02  E-value=6.3  Score=42.48  Aligned_cols=155  Identities=14%  Similarity=0.102  Sum_probs=87.5

Q ss_pred             ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235          537 KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP  615 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~  615 (707)
                      ...+.+.++.+.|++.+++++..|.+..-.-..++.-..+. .....++++.+.+++..+++|. .|.+.+=..+.+ ..
T Consensus       170 ~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G-~s  247 (334)
T PRK13684        170 DAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDL-ES  247 (334)
T ss_pred             CCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCC-Cc
Confidence            44567889999999988888877766542112222222222 3345689999999998887764 466543223333 22


Q ss_pred             eEEeecC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235          616 YRVLKCH----PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP  691 (707)
Q Consensus       616 ~~~l~~h----~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~  691 (707)
                      ......+    ...+.+++|++++.+++++ .+|.|..=       ...+.....+....+-...    ...+.|..++.
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S-------~d~G~tW~~~~~~~~~~~~----~~~~~~~~~~~  315 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVS-------KDGGKTWEKDPVGEEVPSN----FYKIVFLDPEK  315 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEe-------CCCCCCCeECCcCCCCCcc----eEEEEEeCCCc
Confidence            2222111    2357889999988766554 56755432       1112221111110111112    77888887766


Q ss_pred             EEEEEeCCCcEEEEe
Q 005235          692 WLFTAGADSVIRLYC  706 (707)
Q Consensus       692 ~L~s~g~Dg~IrlWd  706 (707)
                      .+ .+|..|.|.-|+
T Consensus       316 ~~-~~G~~G~il~~~  329 (334)
T PRK13684        316 GF-VLGQRGVLLRYV  329 (334)
T ss_pred             eE-EECCCceEEEec
Confidence            54 466678887654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.74  E-value=1.1  Score=49.06  Aligned_cols=146  Identities=16%  Similarity=0.126  Sum_probs=84.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC--------CC-ccEEEEEECCC--Cce-eeeee-ccCCCeEEEEEeCCCCEEEEEeCCe
Q 005235          495 KMVSSVEWHRRGDYLSTVMPA--------GE-SRAIFMHQLSK--KLS-HRIPF-KLHGLPVSSVFHPTRSIFFVSTKKN  561 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~d--------g~-~~~V~Iwdl~~--~~~-~~~~~-~~~~~V~~v~fspd~~~l~v~sdg~  561 (707)
                      .....|+|.++|+.+++-..+        .. ...|.+++-..  +.. ....| ........++|.+++  |+++....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            456789999999988775421        01 11566665432  221 11345 445567899999998  55555444


Q ss_pred             EEEE-ECCC-------Ce-EEEEEeCC----CCCeEEEEEcCCCCEEEEEEC-------------------CCcEEEEEC
Q 005235          562 IRVY-DLLK-------QR-LIKKLETG----LKEVSSIAIHPAGDNLIVGSR-------------------EGKLCWFDM  609 (707)
Q Consensus       562 I~iw-Dl~~-------~~-~~~~l~~~----~~~I~sl~~spdg~~L~sGs~-------------------Dg~I~vwDl  609 (707)
                      |..| |...       .+ ++..+...    ......++|.|+|.+.++-+.                   .|.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            5544 5431       11 22223221    234778999999987665431                   144666666


Q ss_pred             CCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235          610 DLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD  644 (707)
Q Consensus       610 ~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D  644 (707)
                      +.+  .+..+...-.....++|+++|.++++-..+
T Consensus       172 dg~--~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       172 DGG--KLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCC--eEEEEecCcCCCccceECCCCCEEEEccCC
Confidence            543  233443333445789999999988775543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.62  E-value=8.8  Score=42.25  Aligned_cols=188  Identities=12%  Similarity=0.135  Sum_probs=86.7

Q ss_pred             cCCCCEEEEEeCC--C-CccEEEEEECCCCceeeeee-c---cCCCeEEEEEeCCCCEEEEEe-----------------
Q 005235          503 HRRGDYLSTVMPA--G-ESRAIFMHQLSKKLSHRIPF-K---LHGLPVSSVFHPTRSIFFVST-----------------  558 (707)
Q Consensus       503 sp~g~~lat~s~d--g-~~~~V~Iwdl~~~~~~~~~~-~---~~~~V~~v~fspd~~~l~v~s-----------------  558 (707)
                      -|+|..++++-.+  | ..+.+.+.|-.+.... ... .   ....-..+-++|..+.++++.                 
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~-g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVK-GRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EE-EE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCcccccc-ceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence            4688877776432  2 3457788887766554 333 1   123345677888888777642                 


Q ss_pred             ----CCeEEEEECCCCeEEEEEeCCCCC--eEEEEE--cCCCCEEEEEEC-CCcEEEEEC-CCCC---cceEEee-----
Q 005235          559 ----KKNIRVYDLLKQRLIKKLETGLKE--VSSIAI--HPAGDNLIVGSR-EGKLCWFDM-DLSS---KPYRVLK-----  620 (707)
Q Consensus       559 ----dg~I~iwDl~~~~~~~~l~~~~~~--I~sl~~--spdg~~L~sGs~-Dg~I~vwDl-~~~~---~~~~~l~-----  620 (707)
                          ..++.+||+.+.+.++++.-+...  ...|.|  .|+..+=++|+. ..+|..|-- +.+.   +.+-.+.     
T Consensus       217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~  296 (461)
T PF05694_consen  217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE  296 (461)
T ss_dssp             HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred             cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence                247999999999999999876433  455666  455555555443 334443332 3221   0111111     


Q ss_pred             ------------cCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccCCCCCCcccceEEee-CCC-------C----
Q 005235          621 ------------CHPKDITNVAFHRSYPLFASC-SDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHT-------S----  675 (707)
Q Consensus       621 ------------~h~~~I~~vafspdg~llaSg-s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~-------~----  675 (707)
                                  .-..-|+.+..|.|.++|..+ =.+|.|+.||+.   |...-.+   +..+. |..       .    
T Consensus       297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS---DP~~Pkl---~gqv~lGG~~~~~~~~~v~g~  370 (461)
T PF05694_consen  297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS---DPFNPKL---VGQVFLGGSIRKGDHPVVKGK  370 (461)
T ss_dssp             SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S---STTS-EE---EEEEE-BTTTT-B--TTS---
T ss_pred             cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC---CCCCCcE---EeEEEECcEeccCCCcccccc
Confidence                        012457999999999976654 478999999876   3222221   22111 110       0    


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEe
Q 005235          676 SNGRGVMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       676 ~~~~gV~~l~fspdg~~L~s~g  697 (707)
                      .-..|..-+..|-||+.|+..+
T Consensus       371 ~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  371 RLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ---S----EEE-TTSSEEEEE-
T ss_pred             ccCCCCCeEEEccCCeEEEEEe
Confidence            0012356788888998885543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.57  E-value=4.3  Score=40.72  Aligned_cols=102  Identities=8%  Similarity=0.084  Sum_probs=62.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEE--CCCCceee----eee-c----cCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQ--LSKKLSHR----IPF-K----LHGLPVSSVFHPTRSIFFVST-KKNI  562 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwd--l~~~~~~~----~~~-~----~~~~V~~v~fspd~~~l~v~s-dg~I  562 (707)
                      .--+.++|+.+.+.|......  +-.|.-||  +.++....    ..+ +    ..-..-.++...+|.+.++.- .++|
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsl--n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V  235 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSL--NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV  235 (310)
T ss_pred             cCCccccccccCcEEEEEccC--ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence            334678888777766554432  23676676  44443220    111 1    011222445555676655554 7999


Q ss_pred             EEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEE
Q 005235          563 RVYDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVG  598 (707)
Q Consensus       563 ~iwDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sG  598 (707)
                      ...|+.+|+.+..+.-....|+|++|-- +-+.|.+.
T Consensus       236 ~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  236 QKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             EEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            9999999999999998888999999952 22444443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.56  E-value=1  Score=49.28  Aligned_cols=101  Identities=14%  Similarity=0.172  Sum_probs=59.6

Q ss_pred             CCeEEEEEeCCCCEEEEEe------------CC-eEEEEECCC--Ce--EEEEEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 005235          540 GLPVSSVFHPTRSIFFVST------------KK-NIRVYDLLK--QR--LIKKLETGLKEVSSIAIHPAGDNLIVGSREG  602 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s------------dg-~I~iwDl~~--~~--~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg  602 (707)
                      .....++|.++|.++++..            .+ .|.+++-..  ++  ....+.........|++.++|  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4567899999999777642            12 677776443  32  233444444567889999998  44444443


Q ss_pred             cEEEEECCCCC----c---ceEEeec----CCCCEEEEEEcCCCCEEEEEe
Q 005235          603 KLCWFDMDLSS----K---PYRVLKC----HPKDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       603 ~I~vwDl~~~~----~---~~~~l~~----h~~~I~~vafspdg~llaSgs  642 (707)
                      .+++.|.....    +   .+..+..    +......++|.|+|.+.++.+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            33344543211    1   1222322    234477899999999777655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.55  E-value=6.5  Score=40.50  Aligned_cols=189  Identities=9%  Similarity=0.030  Sum_probs=103.3

Q ss_pred             eEEEEEec--CCcEEEEEEccCCCccEEEEEeCC--eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC
Q 005235          409 RCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQ--DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD  484 (707)
Q Consensus       409 ~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~--~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~  484 (707)
                      +.+.++.+  ......+.|..++ ..+-+++.-|  .|+.+++.++....                        .-.++.
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~------------------------~~~l~~   88 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQ------------------------SVPLPP   88 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEE------------------------EEE-TT
T ss_pred             EEEEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEE------------------------EEECCc
Confidence            45667777  5566788997777 2334444434  68888877763211                        111111


Q ss_pred             ccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235          485 KLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNI  562 (707)
Q Consensus       485 ~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I  562 (707)
                      ...+. +.-+.+.+..++|           .++   ...+||..+-+.. ..|...+.-..++  .++..|+.+. ...|
T Consensus        89 ~~FgEGit~~~d~l~qLTW-----------k~~---~~f~yd~~tl~~~-~~~~y~~EGWGLt--~dg~~Li~SDGS~~L  151 (264)
T PF05096_consen   89 RYFGEGITILGDKLYQLTW-----------KEG---TGFVYDPNTLKKI-GTFPYPGEGWGLT--SDGKRLIMSDGSSRL  151 (264)
T ss_dssp             T--EEEEEEETTEEEEEES-----------SSS---EEEEEETTTTEEE-EEEE-SSS--EEE--ECSSCEEEE-SSSEE
T ss_pred             cccceeEEEECCEEEEEEe-----------cCC---eEEEEccccceEE-EEEecCCcceEEE--cCCCEEEEECCccce
Confidence            11111 1122333444444           233   8899999988776 6774445555666  4455666655 6889


Q ss_pred             EEEECCCCeEEEEEeCCC-----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee---------------cC
Q 005235          563 RVYDLLKQRLIKKLETGL-----KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK---------------CH  622 (707)
Q Consensus       563 ~iwDl~~~~~~~~l~~~~-----~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~---------------~h  622 (707)
                      +++|..+.+..+++....     ..++-|.|- +|...|=.=....|...|..++ .....+.               ..
T Consensus       152 ~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~  229 (264)
T PF05096_consen  152 YFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPD  229 (264)
T ss_dssp             EEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--T
T ss_pred             EEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhccccccccccc
Confidence            999998877766665321     236667775 5655554545566777787776 4444332               01


Q ss_pred             CCCEEEEEEcCCCC-EEEEE
Q 005235          623 PKDITNVAFHRSYP-LFASC  641 (707)
Q Consensus       623 ~~~I~~vafspdg~-llaSg  641 (707)
                      ..-.+.+||.|... +++||
T Consensus       230 ~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  230 DDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TS-EEEEEEETTTTEEEEEE
T ss_pred             CCeeEeEeEeCCCCEEEEEe
Confidence            34589999998766 55555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.45  E-value=1.5  Score=51.13  Aligned_cols=146  Identities=16%  Similarity=0.231  Sum_probs=91.1

Q ss_pred             CCEEEEEeCCeEEEEECCCCeEE------EEEeC----------------CCCCeEEEEEcC--CCCEEEEEECCCcEEE
Q 005235          551 RSIFFVSTKKNIRVYDLLKQRLI------KKLET----------------GLKEVSSIAIHP--AGDNLIVGSREGKLCW  606 (707)
Q Consensus       551 ~~~l~v~sdg~I~iwDl~~~~~~------~~l~~----------------~~~~I~sl~~sp--dg~~L~sGs~Dg~I~v  606 (707)
                      ..++++|.++.|.||++..-...      ..+..                ....|+-|.+..  +...|+++..||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            77888888999999998642111      11100                001244554432  3467889999999999


Q ss_pred             EECCC-------C------------CcceEEeecCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEecccccCCCCCCccc
Q 005235          607 FDMDL-------S------------SKPYRVLKCHPKDITNVAFH--RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV  665 (707)
Q Consensus       607 wDl~~-------~------------~~~~~~l~~h~~~I~~vafs--pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~  665 (707)
                      |.+..       .            -+|...+. -...++++++|  ...++||+++....|.||-....   .+.....
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~---~~r~~~~  204 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV---DERFYHV  204 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecc---ccccccc
Confidence            96631       0            01333333 24578999999  88889999999888888854321   1111111


Q ss_pred             ceEEeeCCCCCCCCCeeEEEEcCCC---C---EEEEEeCCCcEEEEeC
Q 005235          666 PLEILRGHTSSNGRGVMDCKFHPRQ---P---WLFTAGADSVIRLYCH  707 (707)
Q Consensus       666 pl~~l~gh~~~~~~gV~~l~fspdg---~---~L~s~g~Dg~IrlWdl  707 (707)
                      + ..-..|.      |-+|+|-++.   .   +|++++-.|.+.+|++
T Consensus       205 ~-s~~~~hN------IP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  205 P-SHQHSHN------IPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             c-ccccccC------CCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1 0112333      8889987654   2   7889999999988864

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.37  E-value=7.2  Score=40.21  Aligned_cols=110  Identities=15%  Similarity=0.155  Sum_probs=73.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLI  573 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~  573 (707)
                      ...+.|..+|.++-+.+.-| ...|+.+|+.+++... ..+...---..++...+  .|+.-+  ++...+||..+.+.+
T Consensus        47 TQGL~~~~~g~LyESTG~yG-~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYG-QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTT-EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEEE
T ss_pred             CccEEecCCCEEEEeCCCCC-cEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceEE
Confidence            34677767888888888776 7799999999988651 22343434445666643  455544  899999999999888


Q ss_pred             EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                      .++.-. +.=..|+  .+|..|+......+|+++|..+-
T Consensus       124 ~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen  124 GTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             EEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-
T ss_pred             EEEecC-CcceEEE--cCCCEEEEECCccceEEECCccc
Confidence            888643 2334455  46778888777788999998765

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.22  E-value=3.3  Score=46.68  Aligned_cols=116  Identities=17%  Similarity=0.246  Sum_probs=72.7

Q ss_pred             eccCCCeEEEEEcCCC----CEEEEEeCCCCccEEEEEECCCCce-----ee---eee--ccCCCeEEEEEeCCCCEEEE
Q 005235          491 LRHFKMVSSVEWHRRG----DYLSTVMPAGESRAIFMHQLSKKLS-----HR---IPF--KLHGLPVSSVFHPTRSIFFV  556 (707)
Q Consensus       491 ~~h~~~V~~v~~sp~g----~~lat~s~dg~~~~V~Iwdl~~~~~-----~~---~~~--~~~~~V~~v~fspd~~~l~v  556 (707)
                      ++.-..|..++|.|-+    ..|+++....   .|.||++--...     ..   ..+  ...--.+.+.|||....|++
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkk---hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~V  129 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKK---HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTV  129 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccc---eEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEE
Confidence            3555678999999853    2444555444   999999852211     10   111  11223467899999999999


Q ss_pred             EeCCeE-EEEECCC-C-eEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEECC
Q 005235          557 STKKNI-RVYDLLK-Q-RLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-GKLCWFDMD  610 (707)
Q Consensus       557 ~sdg~I-~iwDl~~-~-~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g~I~vwDl~  610 (707)
                      -+...+ .++++.. + +....+ ...+.|.|.+|.+||..|+++-.. =.-++||-.
T Consensus       130 LT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  130 LTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            874333 4556553 2 333334 445789999999999988776433 235788754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.20  E-value=10  Score=45.42  Aligned_cols=143  Identities=12%  Similarity=0.072  Sum_probs=79.7

Q ss_pred             CCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeE-------------EEEEeC--CCCEEEEEe-----------C
Q 005235          506 GDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPV-------------SSVFHP--TRSIFFVST-----------K  559 (707)
Q Consensus       506 g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~-------------~v~fsp--d~~~l~v~s-----------d  559 (707)
                      +..++.++.|+   .|.-.|..+++.. ..|...+.|.             .+.-.|  .+..+++++           +
T Consensus       260 ~~rV~~~T~Dg---~LiALDA~TGk~~-W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~  335 (764)
T TIGR03074       260 ARRIILPTSDA---RLIALDADTGKLC-EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPS  335 (764)
T ss_pred             CCEEEEecCCC---eEEEEECCCCCEE-EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCC
Confidence            45677777777   7888888888766 5553332221             011111  123455542           4


Q ss_pred             CeEEEEECCCCeEEEEEeCCC-----------------CCe-EEEEEcCCCCEEEEEE------------------CCCc
Q 005235          560 KNIRVYDLLKQRLIKKLETGL-----------------KEV-SSIAIHPAGDNLIVGS------------------REGK  603 (707)
Q Consensus       560 g~I~iwDl~~~~~~~~l~~~~-----------------~~I-~sl~~spdg~~L~sGs------------------~Dg~  603 (707)
                      |.|+-||+.+|+++..+....                 ..+ ..++++|....++.+.                  +.+.
T Consensus       336 G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s  415 (764)
T TIGR03074       336 GVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS  415 (764)
T ss_pred             cEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence            789999999999988775320                 001 2345555555555432                  2345


Q ss_pred             EEEEECCCCCcceEEeecCCCCEE---------EEEEcC-CCC---EEEEEeCCCcEEEEecc
Q 005235          604 LCWFDMDLSSKPYRVLKCHPKDIT---------NVAFHR-SYP---LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       604 I~vwDl~~~~~~~~~l~~h~~~I~---------~vafsp-dg~---llaSgs~Dg~I~Vwd~~  653 (707)
                      |.-.|++++ +..-.++.....++         -+.+.. +|.   .++.++.+|.+.++|..
T Consensus       416 lvALD~~TG-k~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~  477 (764)
T TIGR03074       416 LVALDATTG-KERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR  477 (764)
T ss_pred             EEEEeCCCC-ceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence            666677776 33333332111111         112222 553   88899999999999544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.07  E-value=10  Score=40.81  Aligned_cols=154  Identities=13%  Similarity=0.117  Sum_probs=79.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCC----------ccEEEEEECCCCce-----------eeeee-ccCCCeEEEEEeCC-
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGE----------SRAIFMHQLSKKLS-----------HRIPF-KLHGLPVSSVFHPT-  550 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~----------~~~V~Iwdl~~~~~-----------~~~~~-~~~~~V~~v~fspd-  550 (707)
                      ......|+|.|+|.+.++.+..+.          .+.|.-.+....-.           ....+ ..-.....++|+|. 
T Consensus       113 ~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~t  192 (331)
T PF07995_consen  113 NHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNT  192 (331)
T ss_dssp             SS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTT
T ss_pred             CCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCC
Confidence            344567999999987777765442          23444344332200           00122 22334568999998 


Q ss_pred             CCEEEEEe--CCeEEEEECCCC-----------------------------eEEEEEeCCCCCeEEEEEcC-------CC
Q 005235          551 RSIFFVST--KKNIRVYDLLKQ-----------------------------RLIKKLETGLKEVSSIAIHP-------AG  592 (707)
Q Consensus       551 ~~~l~v~s--dg~I~iwDl~~~-----------------------------~~~~~l~~~~~~I~sl~~sp-------dg  592 (707)
                      +.++++=.  ++.=.|.-+..+                             .++..+..| ..++.+.|..       .|
T Consensus       193 g~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g  271 (331)
T PF07995_consen  193 GRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRG  271 (331)
T ss_dssp             TEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTT
T ss_pred             CcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccC
Confidence            65554422  332222222221                             123333333 5567777754       34


Q ss_pred             CEEEEEECCCcEEEEECCCCCcceE--E-eecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235          593 DNLIVGSREGKLCWFDMDLSSKPYR--V-LKCHPKDITNVAFHRSYPLFASCSDDCTAY  648 (707)
Q Consensus       593 ~~L~sGs~Dg~I~vwDl~~~~~~~~--~-l~~h~~~I~~vafspdg~llaSgs~Dg~I~  648 (707)
                      .+|++.-..+.|....++.......  . +......+..|++.|||.++++-+.+|.|.
T Consensus       272 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  272 DLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            4555555566788888765432221  1 223444799999999999998888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08145 BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR012953 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=94.02  E-value=0.011  Score=59.73  Aligned_cols=64  Identities=19%  Similarity=0.309  Sum_probs=53.5

Q ss_pred             CCCCCCCccccccccCCcccccCCCCCCCCC-CCCCChH-HHHHHHHHHHHHHcCccccCCCCCccccccccccCCCc
Q 005235          198 HTDFDQYADYVDWFKYDDALHPLSNAPEPKR-RFIPSKW-ESKKVVQYVRAIRKGLIKFDEPKEEEPKFYLLWGDDSS  273 (707)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~k~-~f~psk~-e~~~v~klv~~ir~g~~~~~~~~~~~~~~~~lW~~~~~  273 (707)
                      .++|||.++|+  ||.++..-+..+.|+.+. .|+|.|+ -.++|..+-+.|++.+          ++|+||+-+...
T Consensus       169 ~eSYNPP~EYL--~~~~E~~~w~~~~pedR~~~fiP~k~~sLR~Vp~Y~~~i~ErF----------eRCLDLYLcPR~  234 (260)
T PF08145_consen  169 AESYNPPPEYL--PTEEEKKEWEEMDPEDRKKNFIPQKFDSLRKVPAYENFIKERF----------ERCLDLYLCPRV  234 (260)
T ss_pred             ccccCCchHhc--cCHHHHHHHHhcCchhccccccchhhhhhhccchHHHHHHHHH----------HHhhhhhcCcHh
Confidence            46999999999  887777777777776655 6999999 6788999999999888          689999998765

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This N-terminal domain is found in BOP1-like WD40 proteins. Bop1 is a nucleolar protein involved in rRNA processing, thereby controlling the cell cycle []. It is required for the maturation of the 25S and 5.8S ribosomal RNAs. It may serve as an essential factor in ribosome formation that coordinates processing of the spacer regions in pre-rRNA. The Pes1-Bop1 complex has several components: BOP1, GRWD1, PES1, ORC6L, and RPL3 and is involved in ribosome biogenesis and altered chromosome segregation. The overexpression of BOP1 increases the percentage of multipolar spindles in human cells. Deregulation of the BOP1 pathway may contribute to colorectal tumourigenesis in humans []. Elevated levels of Bop1 induces Bop1/WDR12 and Bop1/Pes1 subcomplexes and the assembly and integrity of the PeBoW complex is highly sensitive to changes in Bop1 protein levels []. Nop7p-Erb1p-Ytm1p, found in yeast, is potentially the homologous complex of Pes1-Bop1-WDR12 as it is involved in the control of ribosome biogenesis and S phase entry. The integrity of the PeBoW complex is required for ribosome biogenesis and cell proliferation in mammalian cells []. In Giardia, the species specific cytoskeleton protein, beta-giardin, interacts with Bop1 []. ; GO: 0006364 rRNA processing, 0005634 nucleus

>PRK13684 Ycf48-like protein; Provisional

Probab=93.90  E-value=2.2  Score=46.04  Aligned_cols=148  Identities=15%  Similarity=0.167  Sum_probs=89.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC-CCceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS-KKLSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ  570 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~-~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~  570 (707)
                      ...+.++.+.+++.+++++.. |   .+.. ... .+..- ...  .....++++.+.++++.++++..|.+++=....+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~-G---~i~~-s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSR-G---NFYS-TWEPGQTAW-TPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCC-c---eEEE-EcCCCCCeE-EEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCC
Confidence            456888999998877766553 3   3322 222 22222 222  4556889999999999888887787654333444


Q ss_pred             eEEEEEeC----CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec---CCCCEEEEEEcCCCCEEEEEeC
Q 005235          571 RLIKKLET----GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC---HPKDITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       571 ~~~~~l~~----~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~---h~~~I~~vafspdg~llaSgs~  643 (707)
                      ..-.....    ....+.++.++|++..+++| .+|.|. ...+.+ +-......   -......+.|..++..++ .+.
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~  321 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ  321 (334)
T ss_pred             CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCC-CCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence            33222221    12347889999988766655 566554 344433 33443322   223578888887777666 456


Q ss_pred             CCcEEEEe
Q 005235          644 DCTAYVFH  651 (707)
Q Consensus       644 Dg~I~Vwd  651 (707)
                      .|.|..|+
T Consensus       322 ~G~il~~~  329 (334)
T PRK13684        322 RGVLLRYV  329 (334)
T ss_pred             CceEEEec
Confidence            88888774

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.82  E-value=0.7  Score=55.29  Aligned_cols=148  Identities=12%  Similarity=-0.002  Sum_probs=92.6

Q ss_pred             CCCeEEEEEeCCCCEEEEEe---CCeEEEEECCCCeE-----EEEEe------CCCCCeEEEEEcCCC-CEEEEEECCCc
Q 005235          539 HGLPVSSVFHPTRSIFFVST---KKNIRVYDLLKQRL-----IKKLE------TGLKEVSSIAIHPAG-DNLIVGSREGK  603 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~s---dg~I~iwDl~~~~~-----~~~l~------~~~~~I~sl~~spdg-~~L~sGs~Dg~  603 (707)
                      .-++..+...+|+...++..   +-.|..||+++-..     ..-|.      .......++.|.|.= ...++...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            34556666667777666543   34799999875311     11111      122345778888864 45677788999


Q ss_pred             EEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE
Q 005235          604 LCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD  683 (707)
Q Consensus       604 I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~  683 (707)
                      |.+..+.........+. ....+++|+|+|.|..++.|-..|++.-|--.    +.   .   ...+.+.-......|.+
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~----le---i---k~~ip~Pp~~e~yrvl~  248 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS----LE---I---KSEIPEPPVEENYRVLS  248 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc----cc---e---eecccCCCcCCCcceeE
Confidence            99988765433333332 45678999999999999999999999888321    11   0   11111111111123999


Q ss_pred             EEEcCCCCEEEEEe
Q 005235          684 CKFHPRQPWLFTAG  697 (707)
Q Consensus       684 l~fspdg~~L~s~g  697 (707)
                      |+|-....||++-+
T Consensus       249 v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  249 VTWLSTQEFLVVYG  262 (1405)
T ss_pred             EEEecceeEEEEec
Confidence            99998888887644

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.81  E-value=2.3  Score=44.10  Aligned_cols=119  Identities=16%  Similarity=0.182  Sum_probs=83.3

Q ss_pred             eee-ccCCCeEEEEEeCCCCEEEEEeC-CeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235          534 IPF-KLHGLPVSSVFHPTRSIFFVSTK-KNIRVYDLLKQRLIKKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD  610 (707)
Q Consensus       534 ~~~-~~~~~V~~v~fspd~~~l~v~sd-g~I~iwDl~~~~~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~  610 (707)
                      .++ +....+.++.|+|+.+.|++.++ ..-.|+=...|+++.++.- +-...-.|.+..+|.++++--.++.+.++.++
T Consensus        79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            345 55667999999999999998874 4444554455888887653 22345678888788888887788899999887


Q ss_pred             CCCcce---------EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          611 LSSKPY---------RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       611 ~~~~~~---------~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      .....+         ......+...-.++|.|....|..+-+-.-+.||.+
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~  209 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV  209 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence            653211         111122566789999999888888877776777744

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.76  E-value=16  Score=42.02  Aligned_cols=62  Identities=13%  Similarity=0.078  Sum_probs=40.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCC-----cEEE-EEEccCCCccEEEEEe------CCeEEEEECCCCCch
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGE-----AIQY-VAWNPLPELPVLAVSV------GQDVLILNTGLGNEE  453 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~-----~V~~-v~~spdg~~~lla~s~------d~~V~lwd~~~~~~~  453 (707)
                      ..++.++.|+.|.-.|..||+.+.......     .+.+ .... ++  .+++++.      ++.|..+|..++...
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g--~Vivg~~~~~~~~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG--KVITGISGGEFGVRGYVTAYDAKTGKLV  194 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC--EEEEeecccccCCCcEEEEEECCCCcee
Confidence            467788899999999999999987765411     1111 1111 34  3555443      578999998888653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.74  E-value=6.4  Score=39.16  Aligned_cols=106  Identities=15%  Similarity=0.175  Sum_probs=69.0

Q ss_pred             cEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEE
Q 005235          432 PVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLST  511 (707)
Q Consensus       432 ~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat  511 (707)
                      .|+.++.+..|.+|++......                                 .......-+.|..+.++..|+||+|
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~---------------------------------~~~~F~Tv~~V~~l~y~~~GDYlvT   76 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECP---------------------------------LLCTFSTVGRVLQLVYSEAGDYLVT   76 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCc---------------------------------eeEEEcchhheeEEEeccccceEEE
Confidence            4666688888999997632111                                 0112234478999999999999999


Q ss_pred             EeCCCCcc---EEEEEE-CCCC----ceee----------------------eeeccCCCeEEEEEeCCCCEEEEEeCCe
Q 005235          512 VMPAGESR---AIFMHQ-LSKK----LSHR----------------------IPFKLHGLPVSSVFHPTRSIFFVSTKKN  561 (707)
Q Consensus       512 ~s~dg~~~---~V~Iwd-l~~~----~~~~----------------------~~~~~~~~V~~v~fspd~~~l~v~sdg~  561 (707)
                      .-.+....   .+++|- ++..    ....                      ..+.....+.+++.-|-.--|++|+++.
T Consensus        77 lE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~  156 (215)
T PF14761_consen   77 LEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNK  156 (215)
T ss_pred             EEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCE
Confidence            87766444   566652 1111    0000                      1113345778888888777788899999


Q ss_pred             EEEEECCCC
Q 005235          562 IRVYDLLKQ  570 (707)
Q Consensus       562 I~iwDl~~~  570 (707)
                      +.+|.+..+
T Consensus       157 l~lf~l~~~  165 (215)
T PF14761_consen  157 LVLFTLKYQ  165 (215)
T ss_pred             EEEEEEEEE
Confidence            999988654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.70  E-value=0.18  Score=37.43  Aligned_cols=30  Identities=20%  Similarity=0.483  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 005235          581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMD  610 (707)
Q Consensus       581 ~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~  610 (707)
                      ..|.+++|+|..++||.|+.+|.|.+|.+.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            469999999999999999999999999983

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.70  E-value=7  Score=40.55  Aligned_cols=141  Identities=13%  Similarity=0.168  Sum_probs=93.8

Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEE
Q 005235          491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFFVST-KKNIRVYD  566 (707)
Q Consensus       491 ~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~v~s-dg~I~iwD  566 (707)
                      ....+.+..+.++.  +|...+..+.   .++|.|+++.... ...   ...+--.++..  .|+++.++. +.-+.++|
T Consensus        83 i~~~~l~~Dv~vse--~yvyvad~ss---GL~IvDIS~P~sP-~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivd  154 (370)
T COG5276          83 INARDLFADVRVSE--EYVYVADWSS---GLRIVDISTPDSP-TLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVD  154 (370)
T ss_pred             EehhhhhheeEecc--cEEEEEcCCC---ceEEEeccCCCCc-ceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEE
Confidence            34456677778764  4555444444   8999999987765 333   33344444444  488898888 77788899


Q ss_pred             CCCC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC-CEEEEEEcCCCCEEEEE
Q 005235          567 LLKQ---RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK-DITNVAFHRSYPLFASC  641 (707)
Q Consensus       567 l~~~---~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~-~I~~vafspdg~llaSg  641 (707)
                      +.+.   .+...+.........+++|  |++-.++..|+-+.+-|+.....|...-....+ .+.++..+++.-+++..
T Consensus       155 vsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy  231 (370)
T COG5276         155 VSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY  231 (370)
T ss_pred             CCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc
Confidence            8763   3444444443434567775  788888889999999999877666543333344 78888888877666554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.47  E-value=13  Score=39.95  Aligned_cols=159  Identities=17%  Similarity=0.286  Sum_probs=92.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCC---ccEEEEEECCCC--c--ee----eeee-ccCC--------CeEEEEEeCCCCE
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGE---SRAIFMHQLSKK--L--SH----RIPF-KLHG--------LPVSSVFHPTRSI  553 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~---~~~V~Iwdl~~~--~--~~----~~~~-~~~~--------~V~~v~fspd~~~  553 (707)
                      -+.+..+.+.+++..+++.+.++.   ...+...++...  .  ..    ..++ ...+        ..-++++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356788888877777888887772   111444444431  0  00    0222 2222        3447888777776


Q ss_pred             EEEEe-C------CeEEEEECCCCeEEEEEe---------------CCCCCeEEEEEcCCCCEEEEEEC-----CC----
Q 005235          554 FFVST-K------KNIRVYDLLKQRLIKKLE---------------TGLKEVSSIAIHPAGDNLIVGSR-----EG----  602 (707)
Q Consensus       554 l~v~s-d------g~I~iwDl~~~~~~~~l~---------------~~~~~I~sl~~spdg~~L~sGs~-----Dg----  602 (707)
                      +++.- +      ..|+.++.. |+....+.               .....+-+|+++|+|..|+++..     |+    
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            66654 5      678888876 65544441               12345889999999997666543     21    


Q ss_pred             -------cEEEEECCCCCcceEEeec---------CCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEecc
Q 005235          603 -------KLCWFDMDLSSKPYRVLKC---------HPKDITNVAFHRSYPLFASCS-----DDCTAYVFHGM  653 (707)
Q Consensus       603 -------~I~vwDl~~~~~~~~~l~~---------h~~~I~~vafspdg~llaSgs-----~Dg~I~Vwd~~  653 (707)
                             +|..||..+...+...+.+         ....|..+.+-+++.+|+.==     ....++|+.+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                   2344555442223333322         345688999999999776421     34567777553

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.31  E-value=4.3  Score=40.37  Aligned_cols=58  Identities=22%  Similarity=0.308  Sum_probs=40.5

Q ss_pred             CeEEEEEeCCCCEEEEEeCCeEEEEECCC--CeEEEEEeCCCCCeEEEEEcCCCCEEEEEE
Q 005235          541 LPVSSVFHPTRSIFFVSTKKNIRVYDLLK--QRLIKKLETGLKEVSSIAIHPAGDNLIVGS  599 (707)
Q Consensus       541 ~V~~v~fspd~~~l~v~sdg~I~iwDl~~--~~~~~~l~~~~~~I~sl~~spdg~~L~sGs  599 (707)
                      ....++-.+.+.+|++++.+.|.+|++.+  .+++.+|..- +.|..|+++..|++|++--
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence            33444444433344445588999999983  4667777654 7899999999999999853

>PHA02713 hypothetical protein; Provisional

Probab=93.27  E-value=4.2  Score=47.17  Aligned_cols=184  Identities=10%  Similarity=0.103  Sum_probs=86.9

Q ss_pred             CCCEEEEEeCCC---CccEEEEEECCCCceee-eeec-cCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEE
Q 005235          505 RGDYLSTVMPAG---ESRAIFMHQLSKKLSHR-IPFK-LHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLI  573 (707)
Q Consensus       505 ~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~-~~~~-~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~  573 (707)
                      ++..++.|+.+.   ....+..||..+..... .++. ..... +++. -++.+.++|+ +     .++..||..+++-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            566667776532   12468888987765321 1221 11112 2222 2456666665 3     35889998876432


Q ss_pred             E--EEeCCCCCeEEEEEcCCCCEEEEEECCC-----------------------cEEEEECCCCCcceEEeecC-CCCEE
Q 005235          574 K--KLETGLKEVSSIAIHPAGDNLIVGSREG-----------------------KLCWFDMDLSSKPYRVLKCH-PKDIT  627 (707)
Q Consensus       574 ~--~l~~~~~~I~sl~~spdg~~L~sGs~Dg-----------------------~I~vwDl~~~~~~~~~l~~h-~~~I~  627 (707)
                      .  .+.........+++  +|...++|+.++                       .+..||..+..  ...+..- .....
T Consensus       381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~~r~~  456 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWTGTIR  456 (557)
T ss_pred             ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCCCCccccc
Confidence            1  22211111222333  577778887653                       46778876541  1111110 11111


Q ss_pred             EEEEcCCCCEEEEEeCCC------cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC-
Q 005235          628 NVAFHRSYPLFASCSDDC------TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS-  700 (707)
Q Consensus       628 ~vafspdg~llaSgs~Dg------~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg-  700 (707)
                      ..+..-++.+.+.|+.++      .|..||      ..++.....+..+......    ...+++  ++...++||.|| 
T Consensus       457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Yd------p~~~~~W~~~~~m~~~r~~----~~~~~~--~~~iyv~Gg~~~~  524 (557)
T PHA02713        457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYN------TNTYNGWELITTTESRLSA----LHTILH--DNTIMMLHCYESY  524 (557)
T ss_pred             CcEEEECCEEEEEeCCCCCCccceeEEEec------CCCCCCeeEccccCccccc----ceeEEE--CCEEEEEeeecce
Confidence            111223567777777542      355664      3321111122223222221    222333  677888898888 


Q ss_pred             -cEEEEe
Q 005235          701 -VIRLYC  706 (707)
Q Consensus       701 -~IrlWd  706 (707)
                       ++-.||
T Consensus       525 ~~~e~yd  531 (557)
T PHA02713        525 MLQDTFN  531 (557)
T ss_pred             eehhhcC
Confidence             444443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.17  E-value=4.3  Score=43.65  Aligned_cols=105  Identities=21%  Similarity=0.260  Sum_probs=59.6

Q ss_pred             CeEEEEEeCCCCEEEEEeCCeEEEEECCCCeE---EEEE----eCCCCCeEEEEEcCC----CCEEEEEECC--------
Q 005235          541 LPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRL---IKKL----ETGLKEVSSIAIHPA----GDNLIVGSRE--------  601 (707)
Q Consensus       541 ~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~---~~~l----~~~~~~I~sl~~spd----g~~L~sGs~D--------  601 (707)
                      ..++|+|.|++.+|++-..|.|++++ ..+..   +..+    .........++++|+    +.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            46789999999876665589999999 44433   3333    123456899999995    4444444422        


Q ss_pred             CcEEEEECCCCC-------cceEEeec---CCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235          602 GKLCWFDMDLSS-------KPYRVLKC---HPKDITNVAFHRSYPLFASCSDDCT  646 (707)
Q Consensus       602 g~I~vwDl~~~~-------~~~~~l~~---h~~~I~~vafspdg~llaSgs~Dg~  646 (707)
                      .+|.-|.+....       ..+..+..   .......++|.|+|.++++.++.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence            234444443221       11222222   2344677999999988777765443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.13  E-value=1.9  Score=51.15  Aligned_cols=70  Identities=20%  Similarity=0.305  Sum_probs=47.3

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEECCC----------CCc--ceEEe--------ecCCCCEEEEEEcCC---CCEE
Q 005235          582 EVSSIAIHPAGDNLIVGSREGKLCWFDMDL----------SSK--PYRVL--------KCHPKDITNVAFHRS---YPLF  638 (707)
Q Consensus       582 ~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~----------~~~--~~~~l--------~~h~~~I~~vafspd---g~ll  638 (707)
                      .|..|.++|+|.+|+..+..| |.|..+-.          +..  .-+++        ..+...|..+.|||.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            488899999999999888755 55544421          100  00111        123457889999996   4688


Q ss_pred             EEEeCCCcEEEEec
Q 005235          639 ASCSDDCTAYVFHG  652 (707)
Q Consensus       639 aSgs~Dg~I~Vwd~  652 (707)
                      +.-..|+++|+||+
T Consensus       165 ~vLtsdn~lR~y~~  178 (717)
T PF10168_consen  165 VVLTSDNTLRLYDI  178 (717)
T ss_pred             EEEecCCEEEEEec
Confidence            88888999999954

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02713 hypothetical protein; Provisional

Probab=93.05  E-value=7.9  Score=44.86  Aligned_cols=141  Identities=9%  Similarity=0.073  Sum_probs=73.9

Q ss_pred             CCCEEEEEeCCCC--ccEEEEEECCCCceee-eeec-cCCCeEEEEEeCCCCEEEEEe-C--------------------
Q 005235          505 RGDYLSTVMPAGE--SRAIFMHQLSKKLSHR-IPFK-LHGLPVSSVFHPTRSIFFVST-K--------------------  559 (707)
Q Consensus       505 ~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~-~~~~-~~~~V~~v~fspd~~~l~v~s-d--------------------  559 (707)
                      +|...+.|+.++.  ...+..||..+..... .++. .......+++  ++.+.++|+ +                    
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence            5677777776542  2468899988765431 1221 1111222222  466666555 3                    


Q ss_pred             ---CeEEEEECCCCeEE--EEEeCCCCCeEEEEEcCCCCEEEEEECCC------cEEEEECCC-CC-cceEEeecCCCCE
Q 005235          560 ---KNIRVYDLLKQRLI--KKLETGLKEVSSIAIHPAGDNLIVGSREG------KLCWFDMDL-SS-KPYRVLKCHPKDI  626 (707)
Q Consensus       560 ---g~I~iwDl~~~~~~--~~l~~~~~~I~sl~~spdg~~L~sGs~Dg------~I~vwDl~~-~~-~~~~~l~~h~~~I  626 (707)
                         ..|..||..+.+-.  ..+....... +++. -+|...++|+.++      .+..||..+ .. ..+..+.......
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~  506 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL  506 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence               24778888876432  2221111111 2222 2466777777542      367888876 31 2222333222333


Q ss_pred             EEEEEcCCCCEEEEEeCCC--cEEEEe
Q 005235          627 TNVAFHRSYPLFASCSDDC--TAYVFH  651 (707)
Q Consensus       627 ~~vafspdg~llaSgs~Dg--~I~Vwd  651 (707)
                      ..+++  ++.+.++|+.||  ++-.||
T Consensus       507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd  531 (557)
T PHA02713        507 HTILH--DNTIMMLHCYESYMLQDTFN  531 (557)
T ss_pred             eeEEE--CCEEEEEeeecceeehhhcC
Confidence            33333  678999999888  566663

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.75  E-value=6.3  Score=45.74  Aligned_cols=50  Identities=16%  Similarity=0.207  Sum_probs=39.8

Q ss_pred             CCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCC
Q 005235          397 DGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL  449 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~  449 (707)
                      --.|+|+++ +|+.+..+.- .+.+-.+.|+.+.  .|++...+|++.+|++-.
T Consensus        63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             ceeEEEEec-cccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecch
Confidence            345888885 5777765554 4589999999998  699999999999999643

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.72  E-value=0.27  Score=48.83  Aligned_cols=101  Identities=13%  Similarity=0.116  Sum_probs=69.1

Q ss_pred             CEEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEE-EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-CCEE
Q 005235          552 SIFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSS-IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-KDIT  627 (707)
Q Consensus       552 ~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~s-l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-~~I~  627 (707)
                      .-+++|+ +|.|.+|+..- +.....+......|.+ |..-.++.+..+|+.||.|+.|++... +.+.....|+ .++.
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGE  149 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC-ceeeeeccccCCCcc
Confidence            4466666 99999998762 1111112222223333 233334568899999999999999866 5566666777 6777


Q ss_pred             EEEEcCCCCEEEEE--eCCCcEEEEecc
Q 005235          628 NVAFHRSYPLFASC--SDDCTAYVFHGM  653 (707)
Q Consensus       628 ~vafspdg~llaSg--s~Dg~I~Vwd~~  653 (707)
                      ....+..+.+++++  |.|..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            77777788888888  889999999654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.69  E-value=1.1  Score=53.63  Aligned_cols=143  Identities=10%  Similarity=0.161  Sum_probs=89.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee----eeee-------ccCCCeEEEEEeCCCCEEEE--EeCCe
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH----RIPF-------KLHGLPVSSVFHPTRSIFFV--STKKN  561 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~----~~~~-------~~~~~V~~v~fspd~~~l~v--~sdg~  561 (707)
                      ..+..+...+++...++..... +..|..+|+.+-...    ..+|       .....+.++.|.|.-+...+  .+|+.
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsn-g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSN-GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecC-CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            3445555556666655554433 458889998653221    1233       22345668889987655333  34899


Q ss_pred             EEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec----CCCCEEEEEEcCCCC
Q 005235          562 IRVYDLLKQR-LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC----HPKDITNVAFHRSYP  636 (707)
Q Consensus       562 I~iwDl~~~~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~----h~~~I~~vafspdg~  636 (707)
                      |++.-+.... .+.++. -....+|++|+|.|..+++|-..|++.-|-....  ....+.+    ....|.+|+|-....
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le--ik~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE--IKSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccc--eeecccCCCcCCCcceeEEEEeccee
Confidence            9998775432 222332 2356899999999999999999999988876532  1111111    136799999987766


Q ss_pred             EEEEE
Q 005235          637 LFASC  641 (707)
Q Consensus       637 llaSg  641 (707)
                      ++++-
T Consensus       257 flvvy  261 (1405)
T KOG3630|consen  257 FLVVY  261 (1405)
T ss_pred             EEEEe
Confidence            66543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.66  E-value=0.15  Score=59.21  Aligned_cols=131  Identities=11%  Similarity=0.092  Sum_probs=80.3

Q ss_pred             ccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEECCC--CeEE-----EEEeCCCCCeEEEEEc---CCCCEEEEEECCCcE
Q 005235          537 KLHGLPVSSVFHP-TRSIFFVST-KKNIRVYDLLK--QRLI-----KKLETGLKEVSSIAIH---PAGDNLIVGSREGKL  604 (707)
Q Consensus       537 ~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwDl~~--~~~~-----~~l~~~~~~I~sl~~s---pdg~~L~sGs~Dg~I  604 (707)
                      +..|.|-.++|-. +.+.+.  - -|.+.||++.-  |++.     +....-...+.-+.|.   ++.-++..|-.++.+
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i  207 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI  207 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence            5566677777643 222222  2 26788888752  3322     2222222333444443   456788888888998


Q ss_pred             EEEECCCCCcceEEeecCCCCEEEEE-----------EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC
Q 005235          605 CWFDMDLSSKPYRVLKCHPKDITNVA-----------FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH  673 (707)
Q Consensus       605 ~vwDl~~~~~~~~~l~~h~~~I~~va-----------fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh  673 (707)
                      ++.......  ...+++|...+..++           .||||..||.++.||.+++|.+...    ......|+...+.|
T Consensus       208 ~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~----g~~~~rclhewkph  281 (1283)
T KOG1916|consen  208 RLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT----GKIVHRCLHEWKPH  281 (1283)
T ss_pred             eEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee----ccccHhhhhccCCC
Confidence            888776542  255677887766654           5899999999999999999966432    22233345566666


Q ss_pred             CC
Q 005235          674 TS  675 (707)
Q Consensus       674 ~~  675 (707)
                      ..
T Consensus       282 d~  283 (1283)
T KOG1916|consen  282 DK  283 (1283)
T ss_pred             CC
Confidence            53

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.58  E-value=1.3  Score=49.03  Aligned_cols=83  Identities=18%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeccccc---CCCCCCcccceEEeeCC----CCCCCCCeeEEEEcCCC---CEEE
Q 005235          625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYS---DLNQNPLIVPLEILRGH----TSSNGRGVMDCKFHPRQ---PWLF  694 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~---Dl~~~~~~~pl~~l~gh----~~~~~~gV~~l~fspdg---~~L~  694 (707)
                      .|..|..++.|..+|-++.+|.+..+=-+-++   .+..+...+..+++.-.    +......+..++|||+.   +.|+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            46778889999999999999966554211111   11122111111111100    11123348889999986   6788


Q ss_pred             EEeCCCcEEEEeC
Q 005235          695 TAGADSVIRLYCH  707 (707)
Q Consensus       695 s~g~Dg~IrlWdl  707 (707)
                      .-+.|.+||+|++
T Consensus       185 iL~sdnviRiy~l  197 (741)
T KOG4460|consen  185 LLTSDNVIRIYSL  197 (741)
T ss_pred             EEecCcEEEEEec
Confidence            8889999999986

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.30  E-value=0.31  Score=36.20  Aligned_cols=27  Identities=15%  Similarity=0.169  Sum_probs=25.4

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          681 VMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       681 V~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |..++|+|...+||.++.+|.|.++.+
T Consensus        14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   14 VSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            999999999999999999999999864

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.01  E-value=3.1  Score=46.00  Aligned_cols=146  Identities=12%  Similarity=0.156  Sum_probs=98.1

Q ss_pred             cCCCCcEEEE-EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCC------ccEEEEEeCCeEEEEECCCCCchhcc
Q 005235          384 YPVACYLEYK-GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPE------LPVLAVSVGQDVLILNTGLGNEEEQR  456 (707)
Q Consensus       384 fp~~~~~l~s-gs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~------~~lla~s~d~~V~lwd~~~~~~~~~~  456 (707)
                      +..+.++++. |+.-..+.-.|++.|+.+..|.....| -|.|.|...      ..-+++-++..|.-.|+.....    
T Consensus       475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN----  549 (776)
T COG5167         475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN----  549 (776)
T ss_pred             ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCC----
Confidence            5566666664 666677888999999999999997777 788888631      1345555666666666554311    


Q ss_pred             cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEc----CCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235          457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWH----RRGDYLSTVMPAGESRAIFMHQLSKKLSH  532 (707)
Q Consensus       457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~s----p~g~~lat~s~dg~~~~V~Iwdl~~~~~~  532 (707)
                                         .+.+           ......++.-.|+    ....|+|+++..|   -|++||--..+..
T Consensus       550 -------------------Ki~v-----------~esKdY~tKn~Fss~~tTesGyIa~as~kG---DirLyDRig~rAK  596 (776)
T COG5167         550 -------------------KIKV-----------VESKDYKTKNKFSSGMTTESGYIAAASRKG---DIRLYDRIGKRAK  596 (776)
T ss_pred             -------------------ceee-----------eeehhccccccccccccccCceEEEecCCC---ceeeehhhcchhh
Confidence                               0110           0111111111222    2346999999988   9999996555443


Q ss_pred             eeee-ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECC
Q 005235          533 RIPF-KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLL  568 (707)
Q Consensus       533 ~~~~-~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~  568 (707)
                       ..+ +....|..+..+.+|.++++.+..++.+-|+.
T Consensus       597 -talP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         597 -TALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             -hcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence             445 66778899999999999999889999999875

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.85  E-value=23  Score=39.77  Aligned_cols=107  Identities=14%  Similarity=0.214  Sum_probs=64.2

Q ss_pred             ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--EEEEE----e-CCCCCeEEEEEcCCC------CEEEEEE---
Q 005235          537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--LIKKL----E-TGLKEVSSIAIHPAG------DNLIVGS---  599 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~~~~l----~-~~~~~I~sl~~spdg------~~L~sGs---  599 (707)
                      ..-.....++|.|++.+|++-. .|.|++++..++.  .+..+    . ........|++||+-      .+|.+..   
T Consensus        27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~  106 (454)
T TIGR03606        27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK  106 (454)
T ss_pred             CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence            3345678999999998887776 5999999865542  22111    1 134668999999884      2343331   


Q ss_pred             -------CCCcEEEEECCCCC----cceEEee------cCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235          600 -------REGKLCWFDMDLSS----KPYRVLK------CHPKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       600 -------~Dg~I~vwDl~~~~----~~~~~l~------~h~~~I~~vafspdg~llaSgs~Dg  645 (707)
                             ....|.-|.+....    .....+.      .|.  -..|+|.|+|.++++.++.+
T Consensus       107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~g  167 (454)
T TIGR03606       107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQG  167 (454)
T ss_pred             CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCCC
Confidence                   12345556554210    1112222      233  35688999999887766543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.61  E-value=11  Score=41.73  Aligned_cols=147  Identities=11%  Similarity=0.071  Sum_probs=87.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe----
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR----  571 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~----  571 (707)
                      ....+..+++|.+++++....   .++-|+-....-+.........++++.|.+++.+++++..|.+..- ...++    
T Consensus       240 sf~~v~~~~dG~~~~vg~~G~---~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~~~~~  315 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSSRGN---FYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGLTEED  315 (398)
T ss_pred             ceeeEEEcCCCCEEEEECCcc---EEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEe-cCCCCcccc
Confidence            345566778888777776532   3333443222112133355667899999999999888877776543 33332    


Q ss_pred             -EEEEEeC--CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee---cCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235          572 -LIKKLET--GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK---CHPKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       572 -~~~~l~~--~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~---~h~~~I~~vafspdg~llaSgs~Dg  645 (707)
                       ....+..  ....+.++.|.+++..+++| ..|.+.... +.+ +......   .-...+..+.|.++++.+++| .+|
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G-~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G  391 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGG-KSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG  391 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCC-cceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence             2222221  22348899999887766665 556655543 333 4444433   223568899998887777665 678


Q ss_pred             cEEEE
Q 005235          646 TAYVF  650 (707)
Q Consensus       646 ~I~Vw  650 (707)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            76655

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.22  E-value=10  Score=34.81  Aligned_cols=122  Identities=11%  Similarity=0.079  Sum_probs=78.0

Q ss_pred             EEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE
Q 005235          423 VAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW  502 (707)
Q Consensus       423 v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~  502 (707)
                      -.|.... ..|++++..++|.|.++........                ..+..+..           ......|++++-
T Consensus         4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~----------------~~~~~i~~-----------LNin~~italaa   55 (136)
T PF14781_consen    4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTG----------------RQDSDISF-----------LNINQEITALAA   55 (136)
T ss_pred             EEeCCCc-eeEEEEecCCEEEEECCCccccccc----------------cccCceeE-----------EECCCceEEEEE
Confidence            3455555 3688888999999999765432110                01222332           344556666654


Q ss_pred             cC-----CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeC----CCCEEEEEeCCeEEEEECCCCeEE
Q 005235          503 HR-----RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP----TRSIFFVSTKKNIRVYDLLKQRLI  573 (707)
Q Consensus       503 sp-----~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp----d~~~l~v~sdg~I~iwDl~~~~~~  573 (707)
                      .+     ..+.|+.|+..    .+..||+...... .--.....|.++.+-.    ..+++++|+...|.-||....+..
T Consensus        56 G~l~~~~~~D~LliGt~t----~llaYDV~~N~d~-Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   56 GRLKPDDGRDCLLIGTQT----SLLAYDVENNSDL-FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             EecCCCCCcCEEEEeccc----eEEEEEcccCchh-hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            33     35677777753    7999999887643 1115567788887743    467788888899999998766666


Q ss_pred             EEEe
Q 005235          574 KKLE  577 (707)
Q Consensus       574 ~~l~  577 (707)
                      .+..
T Consensus       131 WtVt  134 (136)
T PF14781_consen  131 WTVT  134 (136)
T ss_pred             EEec
Confidence            6554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=90.98  E-value=2.5  Score=48.89  Aligned_cols=109  Identities=17%  Similarity=0.244  Sum_probs=70.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEc--cCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWN--PLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~s--pdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      ..+..+...++.|||...+.....-..  .+.|..+.|.  |++ ..++++|..+.|.++.-...+.....         
T Consensus        43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~---------  112 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKG---------  112 (631)
T ss_pred             EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCC---------
Confidence            333445556899999998886554444  8999999995  567 47999999999999874321110000         


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccC-CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHF-KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS  527 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~-~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~  527 (707)
                            ..-..++..+        +..|+ .+|.+..|.++|..++.++.     .+.|++-.
T Consensus       113 ------p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~sGN-----qlfv~dk~  156 (631)
T PF12234_consen  113 ------PSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGSGN-----QLFVFDKW  156 (631)
T ss_pred             ------cccceeEEEE--------eecCCCCCccceeEecCCeEEEEeCC-----EEEEECCC
Confidence                  0000111111        22333 68999999999987776654     88888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=90.78  E-value=7.2  Score=44.85  Aligned_cols=105  Identities=10%  Similarity=0.131  Sum_probs=52.6

Q ss_pred             CCCEEEEEeCCC---CccEEEEEECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe-C--------CeEEEEECCCCe
Q 005235          505 RGDYLSTVMPAG---ESRAIFMHQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST-K--------KNIRVYDLLKQR  571 (707)
Q Consensus       505 ~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s-d--------g~I~iwDl~~~~  571 (707)
                      ++..++.|+...   ....+..||..+..... .++.....-.+++.. ++.++++|+ .        ..+.+||..+++
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            566666666432   12478899987765431 111111111122322 455555554 2        238899988764


Q ss_pred             EEEE--EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 005235          572 LIKK--LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLS  612 (707)
Q Consensus       572 ~~~~--l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~  612 (707)
                      -...  +.........+.+  ++..++.|+.+     +.|.+||..+.
T Consensus       468 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        468 WTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             eeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            3321  1111111222233  56777777654     45778887653

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.73  E-value=0.073  Score=57.98  Aligned_cols=113  Identities=12%  Similarity=0.199  Sum_probs=80.8

Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235          493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR  571 (707)
Q Consensus       493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~  571 (707)
                      .++....++|..+|+.++.....  .+.+.+|++++...+...++....-.-+.|++..+.++.+. .+.+.||+..+.+
T Consensus        73 ~tg~aldm~wDkegdvlavlAek--~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR  150 (615)
T KOG2247|consen   73 PTGKALDMAWDKEGDVLAVLAEK--TGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR  150 (615)
T ss_pred             CchhHhhhhhccccchhhhhhhc--CCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchh
Confidence            45566778888888876665542  24899999998766523443333333478999999999998 8999999998876


Q ss_pred             EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                      .+-.+-.|...++++++.+.+ +.+.++.|..+.+-.
T Consensus       151 ~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  151 RIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTT  186 (615)
T ss_pred             hhhhhcccccceeEEEecccc-eeeecCcHHHHHHhh
Confidence            665554488889999999876 555566665554443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.71  E-value=31  Score=38.25  Aligned_cols=46  Identities=22%  Similarity=0.245  Sum_probs=37.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235          579 GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       579 ~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      ....+.+|+.+|++.+.|+...-|+|.++|+..+ ..++.+++...+
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdA  351 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDA  351 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccc
Confidence            3355889999999999999888899999999977 677777776553

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.63  E-value=47  Score=40.19  Aligned_cols=173  Identities=10%  Similarity=0.090  Sum_probs=102.9

Q ss_pred             cCCcEEEEEEc---c--CCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE
Q 005235          416 IGEAIQYVAWN---P--LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR  490 (707)
Q Consensus       416 ~~~~V~~v~~s---p--dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~  490 (707)
                      ...+|..|+|+   .  +....++++-....+.|+.+.-........ .....+                  .......+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~-~~~s~i------------------~~~~l~~i  138 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIR-SRPSRI------------------DPNPLLTI  138 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEccccccccccc-CCcccc------------------ccceeEEe
Confidence            47888999998   3  222257888888888888854332200000 000000                  00000001


Q ss_pred             e---ccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceee----eee-ccCCCe----------EEEEEeCCC
Q 005235          491 L---RHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHR----IPF-KLHGLP----------VSSVFHPTR  551 (707)
Q Consensus       491 ~---~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~----~~~-~~~~~V----------~~v~fspd~  551 (707)
                      .   .-..+...|+|+| +...||.+...|   ...||++.......    ... ...+.+          ..+.|.++.
T Consensus       139 ~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G---~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~  215 (765)
T PF10214_consen  139 SSSDTGGFPHADVAFNPWDQRQFAIVDEKG---NWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS  215 (765)
T ss_pred             chhhcCCCccceEEeccCccceEEEEeccC---cEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCC
Confidence            0   1234677899998 456899999888   99999992211110    111 222333          378899999


Q ss_pred             CEEEEEeCCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCC
Q 005235          552 SIFFVSTKKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       552 ~~l~v~sdg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~  611 (707)
                      ..|++++...+.++|+.+......+.  ....+|..+.-+|.. .++++-+ ...|.|+++..
T Consensus       216 ~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  216 NRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             CEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            99999999999999999875533122  233568888888772 2333322 36899999987

These proteins are found in fungi.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.47  E-value=1.8  Score=47.66  Aligned_cols=129  Identities=11%  Similarity=0.069  Sum_probs=79.6

Q ss_pred             EEEEEECCCCceeeeeeccCCCeEEEEEeCCCC--------EEEEEeCCeEEEEECCCC-eEEEEEeC----CCCCeEEE
Q 005235          520 AIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS--------IFFVSTKKNIRVYDLLKQ-RLIKKLET----GLKEVSSI  586 (707)
Q Consensus       520 ~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~--------~l~v~sdg~I~iwDl~~~-~~~~~l~~----~~~~I~sl  586 (707)
                      .+.-.|+..+... ........| -|.|.|+.+        .|+.-++..|.-.|.+.. ..+.....    .....+|.
T Consensus       491 kLykmDIErGkvv-eeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~  568 (776)
T COG5167         491 KLYKMDIERGKVV-EEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSG  568 (776)
T ss_pred             cceeeecccceee-eEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccccccc
Confidence            6666677777665 455444445 677777543        355556877877787642 22221111    11223333


Q ss_pred             EEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          587 AIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       587 ~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .-.. ..++|+||..|-|++||-- +.+....+.+...+|..|..+.+|.++++.+ ...+.+-|+.
T Consensus       569 ~tTe-sGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         569 MTTE-SGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             cccc-CceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            3333 3599999999999999964 3344556777788999999999999654433 2455555543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.10  E-value=10  Score=34.90  Aligned_cols=106  Identities=16%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             EEEcCCCCEEEEEeCCCCccEEEEEECCCCce-------eeeeeccCCCeEEEEEeC-----CCCEEEEEeCCeEEEEEC
Q 005235          500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS-------HRIPFKLHGLPVSSVFHP-----TRSIFFVSTKKNIRVYDL  567 (707)
Q Consensus       500 v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~-------~~~~~~~~~~V~~v~fsp-----d~~~l~v~sdg~I~iwDl  567 (707)
                      -.|......|++++..+   .|.||+......       ....+.....|++++-.+     ....|++|+..+|..||+
T Consensus         4 GkfDG~~pcL~~aT~~g---KV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV   80 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGG---KVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV   80 (136)
T ss_pred             EEeCCCceeEEEEecCC---EEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence            34555556788888766   999998764421       102236777888887554     356799999999999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEEcC----CCCEEEEEECCCcEEEEECC
Q 005235          568 LKQRLIKKLETGLKEVSSIAIHP----AGDNLIVGSREGKLCWFDMD  610 (707)
Q Consensus       568 ~~~~~~~~l~~~~~~I~sl~~sp----dg~~L~sGs~Dg~I~vwDl~  610 (707)
                      ....-+..-... ..|+++.+-.    ...++++| .+..|.-||.+
T Consensus        81 ~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~  125 (136)
T PF14781_consen   81 ENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE  125 (136)
T ss_pred             ccCchhhhhhCc-cceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence            877544322222 4567776632    23445554 34567777765

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.06  E-value=51  Score=39.71  Aligned_cols=203  Identities=9%  Similarity=0.029  Sum_probs=107.1

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcE---------EEEEEccC---------------CCccEEEEEeCCeEE
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAI---------QYVAWNPL---------------PELPVLAVSVGQDVL  443 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V---------~~v~~spd---------------g~~~lla~s~d~~V~  443 (707)
                      ...+|.++.++.|.-.|..||+.+..+.....+         ..+++...               ....++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            457888899999999999999999888763222         12333211               012466667777777


Q ss_pred             EEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC--CCCEEEEEeC--C----
Q 005235          444 ILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR--RGDYLSTVMP--A----  515 (707)
Q Consensus       444 lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp--~g~~lat~s~--d----  515 (707)
                      -+|..++......               ..++.+. |...-.      .....-..+.-.|  .+..+++++.  |    
T Consensus       274 ALDA~TGk~~W~f---------------g~~G~vd-l~~~~g------~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~  331 (764)
T TIGR03074       274 ALDADTGKLCEDF---------------GNNGTVD-LTAGMG------TTPPGYYYPTSPPLVAGTTVVIGGRVADNYST  331 (764)
T ss_pred             EEECCCCCEEEEe---------------cCCCcee-eecccC------cCCCcccccccCCEEECCEEEEEecccccccc
Confidence            7777666432100               0011111 100000      0000000011111  1334444432  1    


Q ss_pred             -CCccEEEEEECCCCceeeeee--c----------------cCCCe-EEEEEeCCCCEEEEEe-----------------
Q 005235          516 -GESRAIFMHQLSKKLSHRIPF--K----------------LHGLP-VSSVFHPTRSIFFVST-----------------  558 (707)
Q Consensus       516 -g~~~~V~Iwdl~~~~~~~~~~--~----------------~~~~V-~~v~fspd~~~l~v~s-----------------  558 (707)
                       ...+.|+-+|+.+++.. -.+  .                ..+.+ ..+++.+...+++..+                 
T Consensus       332 ~~~~G~I~A~Da~TGkl~-W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n  410 (764)
T TIGR03074       332 DEPSGVIRAFDVNTGALV-WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADE  410 (764)
T ss_pred             cCCCcEEEEEECCCCcEe-eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcc
Confidence             11347888888888766 333  1                00111 2334455444444321                 


Q ss_pred             --CCeEEEEECCCCeEEEEEeCCCCC---------eEEEEEcC-CCC---EEEEEECCCcEEEEECCCCC
Q 005235          559 --KKNIRVYDLLKQRLIKKLETGLKE---------VSSIAIHP-AGD---NLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       559 --dg~I~iwDl~~~~~~~~l~~~~~~---------I~sl~~sp-dg~---~L~sGs~Dg~I~vwDl~~~~  613 (707)
                        .+.|.-.|+.+|+....++.....         ..-+.+.- +|.   .|+.++.+|.++++|.+++.
T Consensus       411 ~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       411 KYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             cccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence              256777888999888777652111         12223332 553   78999999999999999873

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.25  E-value=3.4  Score=45.09  Aligned_cols=103  Identities=11%  Similarity=0.184  Sum_probs=73.8

Q ss_pred             ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235          537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR----LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~----~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~  611 (707)
                      ...|+|.++.|++|++.|++-- +++|.+++....+    ...+-+.....|..+.|+.+ .-+|.-+..| +-+|-...
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            5678999999999999999986 9999999974322    22333444456889999865 5555555444 66776655


Q ss_pred             CCcceEEeecCCCCEEEEEEcCCCCEEEEE
Q 005235          612 SSKPYRVLKCHPKDITNVAFHRSYPLFASC  641 (707)
Q Consensus       612 ~~~~~~~l~~h~~~I~~vafspdg~llaSg  641 (707)
                      ..+.++..+.|...|+-..|.++-+++.-|
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEeee
Confidence            445566677888889989999987744333

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.88  E-value=1.2  Score=48.33  Aligned_cols=155  Identities=21%  Similarity=0.268  Sum_probs=92.2

Q ss_pred             ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEE-EEEeCC-CC----CeE-EEEEcCCCCEEEEEECCCcE-EEEE
Q 005235          537 KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLI-KKLETG-LK----EVS-SIAIHPAGDNLIVGSREGKL-CWFD  608 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~-~~l~~~-~~----~I~-sl~~spdg~~L~sGs~Dg~I-~vwD  608 (707)
                      .....|..+-..|+|+.+.+-+...+.++++.+.... +++... .+    .|+ ++..-..|.-|++++.||.| .|||
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            4456788889999999999988899999999875332 122111 11    121 12223356678888889887 5888


Q ss_pred             CCCCCcce----EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235          609 MDLSSKPY----RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC  684 (707)
Q Consensus       609 l~~~~~~~----~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l  684 (707)
                      ++....+.    +.++-....+..+.--.+-+-|++-+..|++.+|+..     ....+.  ....  ..     ++.-+
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st-----~~~~lL--~~~~--~~-----~~~~~  363 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYST-----SEKLLL--FERA--YQ-----APQLV  363 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecc-----cCccee--hhhh--hc-----Cccee
Confidence            87654321    1111112233333322334578888999999999532     111110  1111  11     26678


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEe
Q 005235          685 KFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       685 ~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      ++||.+.+|++-. .|.|+++.
T Consensus       364 ~~Sp~~~~Ll~e~-~gki~~~~  384 (733)
T COG4590         364 AMSPNQAYLLSED-QGKIRLAQ  384 (733)
T ss_pred             eeCcccchheeec-CCceEEEE
Confidence            9999999988764 45677664

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=88.61  E-value=35  Score=35.89  Aligned_cols=181  Identities=9%  Similarity=0.106  Sum_probs=94.2

Q ss_pred             cEEEEeCCCCeEEEEEec-------CCcEEEEEEccCCC----ccEEEE-EeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          399 TVRIWEVESGRCLRVLEI-------GEAIQYVAWNPLPE----LPVLAV-SVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       399 tVrIWd~~tg~~l~~l~~-------~~~V~~v~~spdg~----~~lla~-s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      .|.+||+.+++.++++..       .+.++.+++.....    ...+.+ +..+.|.|+|+.++...-      ++.-.+
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~R------v~~~~~  108 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWR------VLHNSF  108 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEE------EETCGC
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEE------EecCCc
Confidence            578899999999998887       45677787766321    122233 344589999988764311      000000


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC---CCCEEEEEeCCCCccEEEEEECCCC-----ce-------
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR---RGDYLSTVMPAGESRAIFMHQLSKK-----LS-------  531 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp---~g~~lat~s~dg~~~~V~Iwdl~~~-----~~-------  531 (707)
                      .     .+.....+...+    ........+..++.++   +|++|......+    -.+|.+.+.     ..       
T Consensus       109 ~-----~~p~~~~~~i~g----~~~~~~dg~~gial~~~~~d~r~LYf~~lss----~~ly~v~T~~L~~~~~~~~~~~~  175 (287)
T PF03022_consen  109 S-----PDPDAGPFTIGG----ESFQWPDGIFGIALSPISPDGRWLYFHPLSS----RKLYRVPTSVLRDPSLSDAQALA  175 (287)
T ss_dssp             T-----TS-SSEEEEETT----EEEEETTSEEEEEE-TTSTTS-EEEEEETT-----SEEEEEEHHHHCSTT--HHH-HH
T ss_pred             c-----eeccccceeccC----ceEecCCCccccccCCCCCCccEEEEEeCCC----CcEEEEEHHHhhCcccccccccc
Confidence            0     000000000000    1112233477777766   666777666433    234443221     10       


Q ss_pred             -eeeeeccC-CCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-----C-eEEEEEeCCCCCeEEEEEcC--CCCEEEEE
Q 005235          532 -HRIPFKLH-GLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-----Q-RLIKKLETGLKEVSSIAIHP--AGDNLIVG  598 (707)
Q Consensus       532 -~~~~~~~~-~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-----~-~~~~~l~~~~~~I~sl~~sp--dg~~L~sG  598 (707)
                       ....++.+ +....++++++|.++++-- .+.|..|+..+     . +.+..-...-.++.++.+.+  +|.+.+..
T Consensus       176 ~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  176 SQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             HT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             ccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence             00222222 4666788999888777766 79999999886     1 22222111236889999998  66555554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.48  E-value=18  Score=40.64  Aligned_cols=61  Identities=16%  Similarity=0.263  Sum_probs=40.9

Q ss_pred             EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEe----e-cCCCCEEEEEEcCCC
Q 005235          575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVL----K-CHPKDITNVAFHRSY  635 (707)
Q Consensus       575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l----~-~h~~~I~~vafspdg  635 (707)
                      .+..+-.....|+|.|+|++|++--..|+|++++..... .++..+    . ........|+|||+.
T Consensus        24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            344445667899999999877766557999999865432 122111    1 125678999999986

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=88.28  E-value=13  Score=43.10  Aligned_cols=104  Identities=13%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             CCCEEEEEeCCCCc---cEEEEEECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe-CC-----eEEEEECCCCeEEE
Q 005235          505 RGDYLSTVMPAGES---RAIFMHQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST-KK-----NIRVYDLLKQRLIK  574 (707)
Q Consensus       505 ~g~~lat~s~dg~~---~~V~Iwdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s-dg-----~I~iwDl~~~~~~~  574 (707)
                      +|...++|+.++..   .+|..||..+..... .++.....-..++.. ++.+.++|+ ++     +|..||..+.+-..
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence            67788888877755   689999988876542 122222222223333 345555555 43     47889988764332


Q ss_pred             E--EeCCCCCeEEEEEcCCCCEEEEEECCCc-----EEEEECCC
Q 005235          575 K--LETGLKEVSSIAIHPAGDNLIVGSREGK-----LCWFDMDL  611 (707)
Q Consensus       575 ~--l~~~~~~I~sl~~spdg~~L~sGs~Dg~-----I~vwDl~~  611 (707)
                      .  +......+....+  ++...++|+.||.     |..||..+
T Consensus       506 v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  506 VAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             cccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence            2  2223222323333  4677888887764     55555544

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.00  E-value=15  Score=43.28  Aligned_cols=112  Identities=10%  Similarity=0.180  Sum_probs=70.7

Q ss_pred             CCeEEEEEcC--CCCEEEEEeCCCCccEEEEEECCC-------C---------ceeeeee---ccCCCeEEEEEe--CCC
Q 005235          495 KMVSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSK-------K---------LSHRIPF---KLHGLPVSSVFH--PTR  551 (707)
Q Consensus       495 ~~V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~-------~---------~~~~~~~---~~~~~V~~v~fs--pd~  551 (707)
                      ..|+.|....  ....|+.+..||   .|.+|.+..       .         +....|+   .....+.++++|  ...
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG---~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~  177 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDG---DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS  177 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCC---eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc
Confidence            3455554433  456788888888   999996521       0         0000232   566789999999  788


Q ss_pred             CEEEEEe-CCeEEEEECCC--CeEEE-EEeCCCCCeEEEEEcCCC-----C-EEEEEECCCcEEEEEC
Q 005235          552 SIFFVST-KKNIRVYDLLK--QRLIK-KLETGLKEVSSIAIHPAG-----D-NLIVGSREGKLCWFDM  609 (707)
Q Consensus       552 ~~l~v~s-dg~I~iwDl~~--~~~~~-~l~~~~~~I~sl~~spdg-----~-~L~sGs~Dg~I~vwDl  609 (707)
                      ++||+++ ...|.||-...  .+... .-..+...|-+|+|-++.     . .|++++-.|.+.+|++
T Consensus       178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888887 46666654432  22111 111244568888886543     2 7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.64  E-value=25  Score=37.74  Aligned_cols=107  Identities=18%  Similarity=0.226  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCEEEEEECC------CcEEEEECCCCCcceEEe---------------ecCCCCEEEEEEcCCCCEEEEE
Q 005235          583 VSSIAIHPAGDNLIVGSRE------GKLCWFDMDLSSKPYRVL---------------KCHPKDITNVAFHRSYPLFASC  641 (707)
Q Consensus       583 I~sl~~spdg~~L~sGs~D------g~I~vwDl~~~~~~~~~l---------------~~h~~~I~~vafspdg~llaSg  641 (707)
                      .-+|++.++|.++++.-.+      ..|..++.+ + +....+               ...+...-+++++|+|..|+++
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-G-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-C-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            4578887788888877666      778888876 3 333322               1134568899999999955554


Q ss_pred             eC-----CC---------cEEEEecccccCCCC-C-CcccceEEeeCC-CCCCCCCeeEEEEcCCCCEEEE
Q 005235          642 SD-----DC---------TAYVFHGMVYSDLNQ-N-PLIVPLEILRGH-TSSNGRGVMDCKFHPRQPWLFT  695 (707)
Q Consensus       642 s~-----Dg---------~I~Vwd~~~~~Dl~~-~-~~~~pl~~l~gh-~~~~~~gV~~l~fspdg~~L~s  695 (707)
                      ..     |+         .++|+..    +..+ . +...-...+..- ......+|.++.+-+++.+|+-
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~----d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRY----DPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEe----cCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            32     32         1566644    2222 1 111111122110 0002345999999999997753

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=87.36  E-value=40  Score=35.19  Aligned_cols=260  Identities=12%  Similarity=0.110  Sum_probs=137.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEE---EEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCL---RVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l---~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      +++|.+..+.-++|.|+.+...-   ..+...+.-.++..+.+   ...++..+.-+.+.|+.......       +.  
T Consensus        97 ~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn---~aYVadlddgfLivdvsdpssP~-------la--  164 (370)
T COG5276          97 EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGN---YAYVADLDDGFLIVDVSDPSSPQ-------LA--  164 (370)
T ss_pred             cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCC---EEEEeeccCcEEEEECCCCCCce-------ee--
Confidence            46777777777999999875433   33333455566666544   46666656677777876542210       00  


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCe
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLP  542 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V  542 (707)
                                            +........-..++.|  |++-..+..++   .+.|-|++..... .-+   .....+
T Consensus       165 ----------------------grya~~~~d~~~v~IS--Gn~AYvA~~d~---GL~ivDVSnp~sP-vli~~~n~g~g~  216 (370)
T COG5276         165 ----------------------GRYALPGGDTHDVAIS--GNYAYVAWRDG---GLTIVDVSNPHSP-VLIGSYNTGPGT  216 (370)
T ss_pred             ----------------------eeeccCCCCceeEEEe--cCeEEEEEeCC---CeEEEEccCCCCC-eEEEEEecCCce
Confidence                                  0111112222455554  67777777877   8999999887765 222   233467


Q ss_pred             EEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEe--CCCCC--eEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE
Q 005235          543 VSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLE--TGLKE--VSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV  618 (707)
Q Consensus       543 ~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~--~~~~~--I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~  618 (707)
                      .++..+++..++++... .+.+-|....+....+-  ....+  ++.+.+  .|++..+...+.-+.+-|+.....+.-.
T Consensus       217 ~sv~vsdnr~y~vvy~e-gvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~spfl~  293 (370)
T COG5276         217 YSVSVSDNRAYLVVYDE-GVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSPFLS  293 (370)
T ss_pred             EEEEecCCeeEEEEccc-ceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCCCCchh
Confidence            78888877666665543 46666766544222221  11122  333344  4667777777777888888765433311


Q ss_pred             --eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235          619 --LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA  696 (707)
Q Consensus       619 --l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~  696 (707)
                        +......-..+..+  +.++..+..+ +..|-+....+.+...+         +.-..    +.+++.+-+.+.+.+.
T Consensus       294 ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~~~---------g~~ti----~~s~~v~~~~q~~y~~  357 (370)
T COG5276         294 SSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDKRP---------GRPTI----GQSCDVSVDTQIIYST  357 (370)
T ss_pred             ccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChhhccccc---------CcceE----eeecceEEEeeEEEEe
Confidence              11111122233332  3333333333 33334332211111110         10000    3334444455588888


Q ss_pred             eCCCcEEEEeC
Q 005235          697 GADSVIRLYCH  707 (707)
Q Consensus       697 g~Dg~IrlWdl  707 (707)
                      ..++-+.||+.
T Consensus       358 d~~~gl~i~~~  368 (370)
T COG5276         358 DYNGGLSIIEY  368 (370)
T ss_pred             ecCCCEEEEEe
Confidence            88999999873

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.93  E-value=11  Score=41.34  Aligned_cols=139  Identities=12%  Similarity=0.095  Sum_probs=84.8

Q ss_pred             EEEEEeCCCCEEEEEeCCeEEEEECCCC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC---cce
Q 005235          543 VSSVFHPTRSIFFVSTKKNIRVYDLLKQ---RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS---KPY  616 (707)
Q Consensus       543 ~~v~fspd~~~l~v~sdg~I~iwDl~~~---~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~---~~~  616 (707)
                      +.+-|...++.|++...|.+.-|-+...   -++..-....++|.++.||+|.+.||+--.++.|.+++.....   ...
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence            4455555555565555555555544321   1222222344689999999999999999999999999984321   122


Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235          617 RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT  695 (707)
Q Consensus       617 ~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s  695 (707)
                      .+.+..+..|....|+.. .-+|..++.| |-+|-+.    .+.+    .++..+.|...    |.-..|+++-..++-
T Consensus       106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~----pekr----slRlVks~~~n----vnWy~yc~et~v~LL  170 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL----PEKR----SLRLVKSHNLN----VNWYMYCPETAVILL  170 (657)
T ss_pred             HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc----hhhh----hhhhhhhcccC----ccEEEEccccceEee
Confidence            233344566899999866 5566665555 6677431    1111    13444555544    888889998775433

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=86.09  E-value=13  Score=43.42  Aligned_cols=119  Identities=12%  Similarity=0.193  Sum_probs=73.2

Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc--cEEEEEECCCCceeeeee--ccCCCeEEEEEeCC
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES--RAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPT  550 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~--~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd  550 (707)
                      ..+++|...+..........+.-..++|-|.|..+++.+.||..  ..|..+.-+.-+.-...+  +....+..++|+-.
T Consensus       227 ra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~  306 (1243)
T COG5290         227 RAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLL  306 (1243)
T ss_pred             cceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHH
Confidence            34566666555444433445555679999999999999987733  344444433222110111  34455667788777


Q ss_pred             CCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 005235          551 RSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD  593 (707)
Q Consensus       551 ~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~  593 (707)
                      ...++++..+.|.+|-...-.-.-+..-....+.-+.|||...
T Consensus       307 s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~  349 (1243)
T COG5290         307 STVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEK  349 (1243)
T ss_pred             HHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccC
Confidence            7778888889999998765443323333334577788988653

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.01  E-value=1.8  Score=50.71  Aligned_cols=182  Identities=13%  Similarity=0.180  Sum_probs=92.5

Q ss_pred             CCcEEEEeCC--CCeEEEEEec------CCcEEEEEEccCCC--ccEEEEEeCCeEEEEECCCCCc-hhcccccceeeec
Q 005235          397 DGTVRIWEVE--SGRCLRVLEI------GEAIQYVAWNPLPE--LPVLAVSVGQDVLILNTGLGNE-EEQRRVKDLLHVE  465 (707)
Q Consensus       397 DgtVrIWd~~--tg~~l~~l~~------~~~V~~v~~spdg~--~~lla~s~d~~V~lwd~~~~~~-~~~~~~~~v~~~~  465 (707)
                      -|.+.||++.  .|+....+..      ...+.-|.|+|---  .++..+-.++.|++.+..+... .+.+|...+..++
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHH
Confidence            3567888875  4554333322      56667788887321  1233333566777777655433 2222333333322


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC-----CCceeeeee-ccC
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS-----KKLSHRIPF-KLH  539 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~-----~~~~~~~~~-~~~  539 (707)
                      |-                         ..+.+.--..||||..||+++.||   .+..|++-     ..+++ ... .|.
T Consensus       232 ~~-------------------------~~g~~~l~~lSpDGtv~a~a~~dG---~v~f~Qiyi~g~~~~rcl-hewkphd  282 (1283)
T KOG1916|consen  232 FF-------------------------AEGVLKLASLSPDGTVFAWAISDG---SVGFYQIYITGKIVHRCL-HEWKPHD  282 (1283)
T ss_pred             HH-------------------------hhchhhheeeCCCCcEEEEeecCC---ccceeeeeeeccccHhhh-hccCCCC
Confidence            21                         011111112789999999999999   66666653     23333 333 333


Q ss_pred             -CCeEEEEEeCCC---------CEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC------------EE
Q 005235          540 -GLPVSSVFHPTR---------SIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD------------NL  595 (707)
Q Consensus       540 -~~V~~v~fspd~---------~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~------------~L  595 (707)
                       ++-.|..|+.+.         .++++++  .+.+++|....-+|+-.+  -...|..+. -++|.            .+
T Consensus       283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~  359 (1283)
T KOG1916|consen  283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRL  359 (1283)
T ss_pred             CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHH
Confidence             333444455432         2344455  477888887765555111  123344444 33332            12


Q ss_pred             EEEECCCcEEEEECC
Q 005235          596 IVGSREGKLCWFDMD  610 (707)
Q Consensus       596 ~sGs~Dg~I~vwDl~  610 (707)
                      +.-+.++.|.+|.-+
T Consensus       360 v~r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  360 VSRSVDGTIKIWQNR  374 (1283)
T ss_pred             HHhhhHHHHHHhhcc
Confidence            334556777777544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.81  E-value=3.1  Score=41.98  Aligned_cols=65  Identities=9%  Similarity=0.098  Sum_probs=47.9

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE---------------ecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGRCLRVL---------------EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT  447 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l---------------~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~  447 (707)
                      .+...+.+++.-..+|.+++||+.+++++..-               .....|..+.++.+|  ..++.-.+|..+.|+.
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G--~PiV~lsng~~y~y~~   94 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG--VPIVTLSNGDSYSYSP   94 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC--CEEEEEeCCCEEEecc
Confidence            34456677888899999999999998876443               123678888999888  3455556678888886


Q ss_pred             CC
Q 005235          448 GL  449 (707)
Q Consensus       448 ~~  449 (707)
                      .-
T Consensus        95 ~L   96 (219)
T PF07569_consen   95 DL   96 (219)
T ss_pred             cc
Confidence            54

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.20  E-value=4  Score=41.12  Aligned_cols=64  Identities=14%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             EcCCCCEEEEEECCCcEEEEECCCCCcceEE------ee-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          588 IHPAGDNLIVGSREGKLCWFDMDLSSKPYRV------LK-------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       588 ~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~------l~-------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +...+.+|++-+.+|.+++||+.+....+..      +.       .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            3446889999999999999999876322221      22       3456789999999998777766 478888865

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.10  E-value=20  Score=41.88  Aligned_cols=169  Identities=12%  Similarity=0.109  Sum_probs=83.0

Q ss_pred             EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee--ee-ccCCCeEEEEEeCCCCE
Q 005235          477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI--PF-KLHGLPVSSVFHPTRSI  553 (707)
Q Consensus       477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~--~~-~~~~~V~~v~fspd~~~  553 (707)
                      |++++..+...+...-..+.+-.+.|+.+. .|++...+|   +++|+++........  -+ .....|..+.|..+|-.
T Consensus        66 I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g---~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   66 IRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDG---TVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             EEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccc---eEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence            445555555444432223378899999665 566677777   999999876544311  11 12223444444445533


Q ss_pred             EEEEeCCeEEEE-ECCCCeEEEEEeC---CCCCeEEEEEcCCCC---EEEEEE-CCCcEEEEECCCCCcceEEeecCCCC
Q 005235          554 FFVSTKKNIRVY-DLLKQRLIKKLET---GLKEVSSIAIHPAGD---NLIVGS-REGKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       554 l~v~sdg~I~iw-Dl~~~~~~~~l~~---~~~~I~sl~~spdg~---~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      +++. +|.+.+- +.... ..+++..   ..-.-+|.++-+++.   .++--. ..+ ..++....+......+......
T Consensus       142 vlt~-~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~  218 (829)
T KOG2280|consen  142 VLTV-SGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS  218 (829)
T ss_pred             EEec-CCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence            3333 4444443 33321 2222221   111113333333321   111110 111 1222222221112222222356


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          626 ITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +..++.||++++||--...|.|.+-..
T Consensus       219 ~~ki~VS~n~~~laLyt~~G~i~~vs~  245 (829)
T KOG2280|consen  219 VVKISVSPNRRFLALYTETGKIWVVSI  245 (829)
T ss_pred             EEEEEEcCCcceEEEEecCCcEEEEec
Confidence            788999999999999999998888754

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.07  E-value=4  Score=39.42  Aligned_cols=29  Identities=14%  Similarity=0.161  Sum_probs=24.7

Q ss_pred             CCEEEEEEcCCC------CEEEEEeCCCcEEEEec
Q 005235          624 KDITNVAFHRSY------PLFASCSDDCTAYVFHG  652 (707)
Q Consensus       624 ~~I~~vafspdg------~llaSgs~Dg~I~Vwd~  652 (707)
                      ..|.+++|||.|      .+||+.+.+|.|.||.-
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~  120 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP  120 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence            479999999954      38999999999999953

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.87  E-value=68  Score=35.46  Aligned_cols=147  Identities=12%  Similarity=0.113  Sum_probs=81.4

Q ss_pred             eEEEEEeCCCCEEEEEeCCeEEE-EECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc----
Q 005235          542 PVSSVFHPTRSIFFVSTKKNIRV-YDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK----  614 (707)
Q Consensus       542 V~~v~fspd~~~l~v~sdg~I~i-wDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~----  614 (707)
                      ...+...+++.+++++..|.+.. ||-  +..  ...-......++++.+.++|..++++ ..|.+.+ ..+.+..    
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence            44556678888888887665443 332  221  11112234568999999999888776 4565544 3333310    


Q ss_pred             ceEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235          615 PYRVLKC--HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW  692 (707)
Q Consensus       615 ~~~~l~~--h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~  692 (707)
                      .+..+..  -...+.++.|.+++..+++| ..|.|.+..       ..+........-.+-...    ...+.|.+++..
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-------D~G~tW~~~~~~~~~~~~----ly~v~f~~~~~g  384 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-------DGGKSWKRDKGADNIAAN----LYSVKFFDDKKG  384 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-------CCCcceeEccccCCCCcc----eeEEEEcCCCce
Confidence            2222221  12358999999888876655 677776652       112111111100111122    788999877665


Q ss_pred             EEEEeCCCcEEEE
Q 005235          693 LFTAGADSVIRLY  705 (707)
Q Consensus       693 L~s~g~Dg~IrlW  705 (707)
                      +++ |.+|.|.-|
T Consensus       385 ~~~-G~~G~il~~  396 (398)
T PLN00033        385 FVL-GNDGVLLRY  396 (398)
T ss_pred             EEE-eCCcEEEEe
Confidence            554 567877655

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.79  E-value=0.13  Score=56.23  Aligned_cols=136  Identities=15%  Similarity=0.228  Sum_probs=93.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeE
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRL  572 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~  572 (707)
                      .......|-+.+.-++.++.+.   .|..||-.....  ......+....++|.-++..+++..  .+.+.+||+.+...
T Consensus        35 v~pi~~~w~~e~~nlavaca~t---iv~~YD~agq~~--le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANT---IVIYYDKAGQVI--LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             cccceeeEecCCCceehhhhhh---HHHhhhhhccee--cccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence            3444567777776677777655   777777544322  2334556677788888888777654  69999999976421


Q ss_pred             EEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCE
Q 005235          573 IKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPL  637 (707)
Q Consensus       573 ~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~l  637 (707)
                       .++. ++...-+-+.|++.+..++.|...|.+.|++..+. +..-.+-.|...++++++.+.+..
T Consensus       110 -qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~lEd~v  173 (615)
T KOG2247|consen  110 -QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTLEDYV  173 (615)
T ss_pred             -HHHhccCcchHHHHhhccCCccccccccccceEEEeccch-hhhhhhcccccceeEEEeccccee
Confidence             1222 22222233789999999999999999999999887 334344448899999999987653

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=83.91  E-value=61  Score=34.10  Aligned_cols=146  Identities=11%  Similarity=0.148  Sum_probs=79.9

Q ss_pred             CCCeEEEEEcCCC----CEEEEEeCCCCccEEEEEECCCCceeeeee-c-------------------cCCCeEEEEEeC
Q 005235          494 FKMVSSVEWHRRG----DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K-------------------LHGLPVSSVFHP  549 (707)
Q Consensus       494 ~~~V~~v~~sp~g----~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~-------------------~~~~V~~v~fsp  549 (707)
                      .+.+..+.+....    ..+|..+..+ ...|.|+|+.+++.. +.+ .                   ....+..++.+|
T Consensus        60 ~s~lndl~VD~~~~~~~~~~aYItD~~-~~glIV~dl~~~~s~-Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~  137 (287)
T PF03022_consen   60 DSFLNDLVVDVRDGNCDDGFAYITDSG-GPGLIVYDLATGKSW-RVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSP  137 (287)
T ss_dssp             CGGEEEEEEECTTTTS-SEEEEEEETT-TCEEEEEETTTTEEE-EEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-T
T ss_pred             ccccceEEEEccCCCCcceEEEEeCCC-cCcEEEEEccCCcEE-EEecCCcceeccccceeccCceEecCCCccccccCC
Confidence            4566777776522    2455555444 448999999988765 222 1                   122356666655


Q ss_pred             ---CCCEEEEEeCCeEEEEECCC-----C---------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          550 ---TRSIFFVSTKKNIRVYDLLK-----Q---------RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       550 ---d~~~l~v~sdg~I~iwDl~~-----~---------~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                         +++.|+-+.-..-++|-+.+     .         ..++.+-........++++++|.++++--..+.|..|+....
T Consensus       138 ~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~  217 (287)
T PF03022_consen  138 ISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGP  217 (287)
T ss_dssp             TSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred             CCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence               55566665522223333321     1         112222111134567889999988888888999999998852


Q ss_pred             Cc--ceEEeecC---CCCEEEEEEcC--CCCEEEEE
Q 005235          613 SK--PYRVLKCH---PKDITNVAFHR--SYPLFASC  641 (707)
Q Consensus       613 ~~--~~~~l~~h---~~~I~~vafsp--dg~llaSg  641 (707)
                      -.  -+..+..-   -..+.++.+.+  +|.+.+.+
T Consensus       218 ~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  218 YTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             B-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             cCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            11  12223211   24678888888  77655554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PHA02790 Kelch-like protein; Provisional

Probab=83.55  E-value=40  Score=38.29  Aligned_cols=102  Identities=8%  Similarity=-0.043  Sum_probs=52.0

Q ss_pred             CCCEEEEEeCCCCccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEE--EEEeCCCC
Q 005235          505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLI--KKLETGLK  581 (707)
Q Consensus       505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~--~~l~~~~~  581 (707)
                      +|...+.|+.++....+..||..+..-... +......-.+++ .-++.+.++|  |.+.+||..+++-.  ..+.....
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~  438 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRD  438 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC--CceEEecCCCCcEeEcCCCCCCcc
Confidence            577777777665445788898877654311 111111111222 2234444444  45778998776432  22222222


Q ss_pred             CeEEEEEcCCCCEEEEEECC-----CcEEEEECCC
Q 005235          582 EVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDL  611 (707)
Q Consensus       582 ~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~  611 (707)
                      ....+.+  +|...++|+.+     ..+..||..+
T Consensus       439 ~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        439 NPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             ccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence            2222333  56777888754     2355666654

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=83.40  E-value=1e+02  Score=36.23  Aligned_cols=168  Identities=14%  Similarity=0.144  Sum_probs=87.2

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|.+|.|.+++ ..++++..+|.|.+|+...+......                        ....... .-..+..-
T Consensus       129 ~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~------------------------~l~~~~~-~~v~ys~f  182 (670)
T PF10395_consen  129 DDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVP------------------------QLKLKSS-INVSYSKF  182 (670)
T ss_pred             ccceEEEEEecCC-CEEEEEEcCCcEEEEecccccccccc------------------------ccccccc-cceehhhh
Confidence            6788999999888 47888889999999998322111000                        0000000 00011122


Q ss_pred             eEEEEEcCCCCEEEEEeC-CCCccEEEEEEC--CCCceeeee--eccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe
Q 005235          497 VSSVEWHRRGDYLSTVMP-AGESRAIFMHQL--SKKLSHRIP--FKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR  571 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl--~~~~~~~~~--~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~  571 (707)
                      |.....-...+++++.+. .+..-.++++.+  .........  ...........|.-+...|..-.+++|.+|++...+
T Consensus       183 v~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~  262 (670)
T PF10395_consen  183 VNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQ  262 (670)
T ss_pred             hcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCce
Confidence            222222223456666666 554567888888  222221111  111222233333333333444478899999998877


Q ss_pred             EEEEEeCC-----C-CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          572 LIKKLETG-----L-KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       572 ~~~~l~~~-----~-~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                      ..+++.-.     . ..+.++. .|..+.++.+. ++.|++.|+.-.
T Consensus       263 ~~~tI~l~~ii~~~~~~~vSl~-~~s~nRvLLs~-~nkIyLld~~~~  307 (670)
T PF10395_consen  263 IQKTISLPSIIDKESDDLVSLK-PPSPNRVLLSV-NNKIYLLDLKFE  307 (670)
T ss_pred             EEEEEEechhhccccccceEee-cCCCCeEEEEc-CCEEEEEeehhh
Confidence            77665532     1 1233333 23344454443 568999998643

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.27  E-value=5.8  Score=38.29  Aligned_cols=32  Identities=19%  Similarity=0.313  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCC------CEEEEEeCCCCccEEEEEECCCC
Q 005235          495 KMVSSVEWHRRG------DYLSTVMPAGESRAIFMHQLSKK  529 (707)
Q Consensus       495 ~~V~~v~~sp~g------~~lat~s~dg~~~~V~Iwdl~~~  529 (707)
                      ..|.+++|||.|      .+||+...++   .|.||.-...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~---~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNG---RLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCC---eEEEEecCCC
Confidence            478999999955      4677888777   9999986643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.02  E-value=6.2  Score=27.73  Aligned_cols=39  Identities=18%  Similarity=0.396  Sum_probs=30.0

Q ss_pred             CCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Q 005235          549 PTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAI  588 (707)
Q Consensus       549 pd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~  588 (707)
                      |++++|+++.  +++|.++|+.+++.+..+..+ .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            5788888876  699999999999888888775 33445554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=82.66  E-value=3.4  Score=30.01  Aligned_cols=30  Identities=10%  Similarity=0.060  Sum_probs=25.1

Q ss_pred             CCEEEEEEcCCC---CEEEEEeCCCcEEEEecc
Q 005235          624 KDITNVAFHRSY---PLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       624 ~~I~~vafspdg---~llaSgs~Dg~I~Vwd~~  653 (707)
                      ++|+++.|||..   .+||.+-.-|.|.|+|++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            478999999854   488888888999999765

It contains a characteristic DLL sequence motif.

>PHA03098 kelch-like protein; Provisional

Probab=82.60  E-value=37  Score=39.03  Aligned_cols=104  Identities=9%  Similarity=0.076  Sum_probs=52.1

Q ss_pred             CCCEEEEEeCCCC---ccEEEEEECCCCceeeee-ec-cCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEE
Q 005235          505 RGDYLSTVMPAGE---SRAIFMHQLSKKLSHRIP-FK-LHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLI  573 (707)
Q Consensus       505 ~g~~lat~s~dg~---~~~V~Iwdl~~~~~~~~~-~~-~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~  573 (707)
                      ++..++.|+.++.   ...+..||..+......+ +. .......+.+  ++.+++.|+ +     ..+..||..+++-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            4556666665431   136778888776553111 11 1122222222  455666665 3     35788998876432


Q ss_pred             E--EEeCCCCCeEEEEEcCCCCEEEEEECC------CcEEEEECCCC
Q 005235          574 K--KLETGLKEVSSIAIHPAGDNLIVGSRE------GKLCWFDMDLS  612 (707)
Q Consensus       574 ~--~l~~~~~~I~sl~~spdg~~L~sGs~D------g~I~vwDl~~~  612 (707)
                      .  .+....... +++. -++..++.|+.+      ..+..||+.+.
T Consensus       372 ~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        372 EEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             eCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence            1  111111111 2222 256677777632      35788888754

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=82.32  E-value=52  Score=40.01  Aligned_cols=171  Identities=15%  Similarity=0.184  Sum_probs=96.8

Q ss_pred             cEEEEecCCccceEEeccC-----CCeEEEEEcCCCC--EEEEEeCCC--------CccEEEEEECCCCceeeeeeccCC
Q 005235          476 SIVSWLQHDKLDGIRLRHF-----KMVSSVEWHRRGD--YLSTVMPAG--------ESRAIFMHQLSKKLSHRIPFKLHG  540 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~-----~~V~~v~~sp~g~--~lat~s~dg--------~~~~V~Iwdl~~~~~~~~~~~~~~  540 (707)
                      .|++.+..++.......+.     ..|..+.|+....  ++++++...        ..+.++.|++-..... ..|-|..
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~-lellh~T  932 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDK-LELLHKT  932 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCce-eeeeecc
Confidence            3666666655544433322     2456677765443  334443221        1234566665443333 4442222


Q ss_pred             --CeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeC--CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235          541 --LPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLET--GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       541 --~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~--~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                        +-.-.+..|...++++|-...+++||+.+.+++++...  -...|+++.+  .+..+++|..--.|.++-.+.....+
T Consensus       933 ~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen  933 EIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred             CCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeE
Confidence              22234566777788888899999999988766654332  2355777777  47788888776667666555444444


Q ss_pred             EEeecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          617 RVLKCH--PKDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       617 ~~l~~h--~~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      ..+-.-  ...|+++.+- |...+|.|..=|.+.+-
T Consensus      1011 ~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred             EEEeCCCccceeeEEEEe-cCCceeeccccCcEEEE
Confidence            445432  2345555443 45566666666666655

>PRK05560 DNA gyrase subunit A; Validated

Probab=81.88  E-value=1.3e+02  Score=36.55  Aligned_cols=159  Identities=11%  Similarity=0.124  Sum_probs=81.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc--eee------eeec-cCCCeEEEEEeC--CCCEEEEEe-CCeEE
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL--SHR------IPFK-LHGLPVSSVFHP--TRSIFFVST-KKNIR  563 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~--~~~------~~~~-~~~~V~~v~fsp--d~~~l~v~s-dg~I~  563 (707)
                      .+..+......+.|+..+..|.--.+.++++....  .+.      ..+. ...-+.++.+..  +...++..+ +|.++
T Consensus       538 ~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiK  617 (805)
T PRK05560        538 FVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVK  617 (805)
T ss_pred             eeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEE
Confidence            34444444455666666666622233334444322  110      1122 223344555552  456666666 89888


Q ss_pred             EEECCC-------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--------CcceEEeecCCCCEEE
Q 005235          564 VYDLLK-------QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS--------SKPYRVLKCHPKDITN  628 (707)
Q Consensus       564 iwDl~~-------~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~--------~~~~~~l~~h~~~I~~  628 (707)
                      --.+..       +....++..+ ..+..+......+.|+..+..|.+..+.+..-        +.....|.....-+..
T Consensus       618 Ri~l~~~~~~~r~G~~~ikLke~-D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~  696 (805)
T PRK05560        618 KTSLSEFSNIRSNGIIAINLDEG-DELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSM  696 (805)
T ss_pred             EEEhHHhhhcccCCceeeccCCC-CEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEE
Confidence            877642       2233344444 33434434445567888888898887776421        0111122221222333


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecccc
Q 005235          629 VAFHRSYPLFASCSDDCTAYVFHGMVY  655 (707)
Q Consensus       629 vafspdg~llaSgs~Dg~I~Vwd~~~~  655 (707)
                      +.+.++...++..+..|.++...+..+
T Consensus       697 ~~v~~~~~~il~vTk~G~iKr~~l~e~  723 (805)
T PRK05560        697 DVVREDSQEILTVTENGYGKRTPVSEY  723 (805)
T ss_pred             EEEcCCCcEEEEEEeCCeEEEEEHHHh
Confidence            444444446788888999988876543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=81.55  E-value=36  Score=39.58  Aligned_cols=57  Identities=9%  Similarity=0.128  Sum_probs=42.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT  447 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~  447 (707)
                      +.-++.|+.||+|++|+....+.-+.+....+-..+.|...|   ++++.+|..+.-|.-
T Consensus        26 ~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   26 GQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG---LVTATSDRRALAWKE   82 (1636)
T ss_pred             CceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc---eEEEeccchhheeec
Confidence            346788999999999998876654444445566677787777   888888888777763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	707
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-04

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 14/149 (9%)
Query: 557 STKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY 616
           S   +IR++DL   + IK ++ G  +  ++A  P    L  G+  GK+  F ++   K Y
Sbjct: 99  SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158
Query: 617 RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS 676
             L    K I ++A+       AS + D    +F      D+    L   L  L GH   
Sbjct: 159 S-LDTRGKFILSIAYSPDGKYLASGAIDGIINIF------DIATGKL---LHTLEGHAMP 208
Query: 677 NGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
               +    F P    L TA  D  I++Y
Sbjct: 209 ----IRSLTFSPDSQLLVTASDDGYIKIY 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	707
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.77
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.69
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.67
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.63
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.62
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.62
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.61
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.61
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.58
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.53
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.5
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.48
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.47
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.45
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.45
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.45
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.42
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.42
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.41
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.4
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.39
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.36
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.33
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.28
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.26
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.26
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.23
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.23
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.22
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.19
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.18
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.12
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.1
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.08
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.06
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.05
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.05
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.02
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.01
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.95
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.92
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.86
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.86
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.83
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.8
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.79
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.75
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.73
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.69
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.64
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.63
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.62
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.6
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.6
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.59
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.58
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.52
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.51
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.51
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.48
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.48
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.45
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.45
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.45
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.4
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.4
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.37
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.33
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.28
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.24
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.24
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.22
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.22
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.21
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.21
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.2
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.17
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.17
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.14
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.14
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.12
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.1
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.06
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.04
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.03
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.03
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.02
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.01
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.93
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.91
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.89
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.86
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.85
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.81
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.77
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.72
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.66
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.63
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.61
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.59
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.57
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.51
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.42
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.42
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.39
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.38
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.37
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.33
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.33
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.29
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.28
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.18
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.18
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.17
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.08
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.07
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.07
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.04
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.02
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.0
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.73
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.72
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.63
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.56
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.52
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.38
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.17
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.1
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.02
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.88
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.68
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.64
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.36
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.36
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.22
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.56
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.31
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.24
3ott_A	758	Two-component system sensor histidine kinase; beta	94.2
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.81
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.72
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.21
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.88
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.82
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.62
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.47
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.09
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	92.05
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	91.58
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.53
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.4
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.01
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.66
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	90.51
3ott_A	758	Two-component system sensor histidine kinase; beta	89.67
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	89.54
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.2
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.76
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.65
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	85.57

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.7e-41  Score=388.66  Aligned_cols=386  Identities=16%  Similarity=0.186  Sum_probs=294.3

Q ss_pred             CCCCCCCcc-----ccCCCCCccCCh---hhhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCcc
Q 005235          288 KPKLPGHEE-----SYNPSLEYIPTQ---EELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRV  359 (707)
Q Consensus       288 k~~lpgh~~-----synP~ge~L~s~---~~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~  359 (707)
                      ...+.||..     +|+|+|.||+++   +.++.|+....+         ...+..++++.       ..+.++.|+|++
T Consensus        52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~---------~~~~~~~~~~~-------~~v~~v~fs~dg  115 (611)
T 1nr0_A           52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT---------HILKTTIPVFS-------GPVKDISWDSES  115 (611)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT---------CCEEEEEECSS-------SCEEEEEECTTS
T ss_pred             CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc---------ceeeEeecccC-------CceEEEEECCCC
Confidence            335778876     699999999995   456677632211         11122333333       344788888887


Q ss_pred             ccc-----------eeec-CCCCCCCCCCCCCCC---cccCCCC-cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEE
Q 005235          360 RKK-----------RVNI-DPETLKPKLPSRKDL---KPYPVAC-YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQY  422 (707)
Q Consensus       360 ~k~-----------~lni-dp~~llp~lp~~~~l---~pfp~~~-~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~  422 (707)
                      +..           .+.+ +....+..+..+...   -.|.+++ ..+++|+.|++|++||..+++++.++.. .+.|.+
T Consensus       116 ~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~  195 (611)
T 1nr0_A          116 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS  195 (611)
T ss_dssp             CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred             CEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEE
Confidence            532           1222 433333344433221   1244444 4799999999999999999999988876 789999


Q ss_pred             EEEccCCCccEEEEEeCCeEEEEECCCCCch--h-c------ccccceeeeccc-----ccccCCCCcEEEEecCCccc-
Q 005235          423 VAWNPLPELPVLAVSVGQDVLILNTGLGNEE--E-Q------RRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLD-  487 (707)
Q Consensus       423 v~~spdg~~~lla~s~d~~V~lwd~~~~~~~--~-~------~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~-  487 (707)
                      ++|+|++ ..|++++.|++|++|++.++...  + .      +|...+.++.|+     +++++.|++|++|+..+... 
T Consensus       196 v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          196 VRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             EEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence            9999999 47888999999999998877542  2 1      577888888886     88999999999999875321 


Q ss_pred             -------------------------------------------eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235          488 -------------------------------------------GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH  524 (707)
Q Consensus       488 -------------------------------------------~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw  524 (707)
                                                                 ..+.+|...|.+++|+|+|++|++++.|+   .|++|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~---~v~~W  351 (611)
T 1nr0_A          275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG---HINSW  351 (611)
T ss_dssp             EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEE
T ss_pred             eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEE
Confidence                                                       12347999999999999999999999998   99999


Q ss_pred             ECCCCceeeeee--------------------------------------------------------------------
Q 005235          525 QLSKKLSHRIPF--------------------------------------------------------------------  536 (707)
Q Consensus       525 dl~~~~~~~~~~--------------------------------------------------------------------  536 (707)
                      |+.++... ..+                                                                    
T Consensus       352 d~~~~~~~-~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~  430 (611)
T 1nr0_A          352 DISTGISN-RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC  430 (611)
T ss_dssp             ETTTCCEE-ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred             ECCCCcee-eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEe
Confidence            98765432 111                                                                    


Q ss_pred             ---------------ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEE
Q 005235          537 ---------------KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVG  598 (707)
Q Consensus       537 ---------------~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sG  598 (707)
                                     .+...+.+++|+|++++|++|+ |++|++||+.++..  +.. .+|...|++++|+|+|.+|+++
T Consensus       431 ~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~  509 (611)
T 1nr0_A          431 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVAT  509 (611)
T ss_dssp             SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEE
T ss_pred             CceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEE
Confidence                           1123467899999999999999 89999999987654  334 6788999999999999999999


Q ss_pred             ECCCcEEEEECCCCCcceEE--eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-CC
Q 005235          599 SREGKLCWFDMDLSSKPYRV--LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-TS  675 (707)
Q Consensus       599 s~Dg~I~vwDl~~~~~~~~~--l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-~~  675 (707)
                      +.|+.|++||+.+...+...  +.+|...|++|+|+|++++||+|+.|++|+||++.      .... ..+..+.+| ..
T Consensus       510 s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~------~~~~-~~~~~~~~h~~~  582 (611)
T 1nr0_A          510 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN------KPSD-HPIIIKGAHAMS  582 (611)
T ss_dssp             ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT------CTTS-CCEEETTSSTTS
T ss_pred             cCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC------Cccc-ccchhhccCccc
Confidence            99999999999863344433  34599999999999999999999999999999653      2211 113567889 66


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       676 ~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .    |.+++|+|++. |+++|.|++|++|++
T Consensus       583 ~----v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          583 S----VNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             C----EEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             C----eeEEEEcCCCE-EEEecCCCCEEEEec
Confidence            6    99999999998 999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.3e-39  Score=375.17  Aligned_cols=352  Identities=16%  Similarity=0.211  Sum_probs=265.4

Q ss_pred             ccCCCCCccCChh--hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCC
Q 005235          297 SYNPSLEYIPTQE--ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPK  374 (707)
Q Consensus       297 synP~ge~L~s~~--~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~  374 (707)
                      +|+|+|++|++..  .+..|+.           .....++.+.+       |...+..+.|+|++               
T Consensus        25 ~~spdg~~l~~~~~~~v~l~~~-----------~~~~~~~~~~~-------h~~~v~~~~~spdg---------------   71 (611)
T 1nr0_A           25 GNTPAGDKIQYCNGTSVYTVPV-----------GSLTDTEIYTE-------HSHQTTVAKTSPSG---------------   71 (611)
T ss_dssp             EECTTSSEEEEEETTEEEEEET-----------TCSSCCEEECC-------CSSCEEEEEECTTS---------------
T ss_pred             eeCCCCCEEEeCCCCEEEEecC-----------CCcccCeEecC-------CCCceEEEEECCCC---------------
Confidence            6999999998843  3344542           22223333333       34444677788765               


Q ss_pred             CCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccCCCccEEEEEeC----CeEEEEEC
Q 005235          375 LPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPLPELPVLAVSVG----QDVLILNT  447 (707)
Q Consensus       375 lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spdg~~~lla~s~d----~~V~lwd~  447 (707)
                                    .++++|+.||+|+|||+.+++  +...+.. .+.|.+|+|+|++. .|++++.+    +.|.+|+.
T Consensus        72 --------------~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~-~l~~~~~~~~~~~~v~~wd~  136 (611)
T 1nr0_A           72 --------------YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDT  136 (611)
T ss_dssp             --------------SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTT
T ss_pred             --------------cEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC-EEEEEECCCCceeEEEEeeC
Confidence                          499999999999999997653  4445554 78999999999993 56666654    37888886


Q ss_pred             CCCCchhcccccceeeeccc------ccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccE
Q 005235          448 GLGNEEEQRRVKDLLHVETP------TAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRA  520 (707)
Q Consensus       448 ~~~~~~~~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~  520 (707)
                      ......+.+|...+.++.|.      +++++.|+++++|+...... ..+.+|...|.+++|+|+|++||+++.|+   .
T Consensus       137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~---~  213 (611)
T 1nr0_A          137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG---T  213 (611)
T ss_dssp             CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---C
T ss_pred             CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC---c
Confidence            55555677888888888876      78899999999999876543 34778999999999999999999999998   9


Q ss_pred             EEEEECCCCceeeeee--------ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE----------------
Q 005235          521 IFMHQLSKKLSHRIPF--------KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK----------------  575 (707)
Q Consensus       521 V~Iwdl~~~~~~~~~~--------~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~----------------  575 (707)
                      |+||++.++... ..+        .|.+.|.+++|+|++.+|++++ |++|++||+.+++++.+                
T Consensus       214 i~lwd~~~g~~~-~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  292 (611)
T 1nr0_A          214 IVLYNGVDGTKT-GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW  292 (611)
T ss_dssp             EEEEETTTCCEE-EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred             EEEEECCCCcEe-eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence            999999888776 555        4889999999999999999998 99999999998765543                


Q ss_pred             ---------------------------EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-e-------
Q 005235          576 ---------------------------LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-K-------  620 (707)
Q Consensus       576 ---------------------------l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~-------  620 (707)
                                                 +.+|...|++++|+|+|.+|++|+.|+.|++||+.++. ....+ .       
T Consensus       293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~~~~h~~~v~  371 (611)
T 1nr0_A          293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFPDVHATMIT  371 (611)
T ss_dssp             CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECSSCSCSSCEE
T ss_pred             cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeecccCCcceEE
Confidence                                       34688889999999999999999999999999987541 11100 0       


Q ss_pred             --------------------------------------------------------------------------cCCCCE
Q 005235          621 --------------------------------------------------------------------------CHPKDI  626 (707)
Q Consensus       621 --------------------------------------------------------------------------~h~~~I  626 (707)
                                                                                                .|...+
T Consensus       372 ~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v  451 (611)
T 1nr0_A          372 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS  451 (611)
T ss_dssp             EEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCE
T ss_pred             EEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCc
Confidence                                                                                      123345


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeccccc-------------------------------------CCCCCCcccceE-
Q 005235          627 TNVAFHRSYPLFASCSDDCTAYVFHGMVYS-------------------------------------DLNQNPLIVPLE-  668 (707)
Q Consensus       627 ~~vafspdg~llaSgs~Dg~I~Vwd~~~~~-------------------------------------Dl~~~~~~~pl~-  668 (707)
                      .+++|+|+|++||+|+.|++|+||++....                                     ++.+..  .++. 
T Consensus       452 ~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~  529 (611)
T 1nr0_A          452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHT  529 (611)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCC
T ss_pred             eEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeee
Confidence            677777777777777777777777653210                                     000000  0011 


Q ss_pred             -EeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          669 -ILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       669 -~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                       .+.+|...    |.+++|+|++++|+||+.|++|+||++
T Consensus       530 ~~~~~H~~~----V~~v~fspdg~~lasgs~D~~v~lW~~  565 (611)
T 1nr0_A          530 NSWTFHTAK----VACVSWSPDNVRLATGSLDNSVIVWNM  565 (611)
T ss_dssp             CCCCCCSSC----EEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeeeecccc----eeEEEECCCCCEEEEEECCCcEEEEEC
Confidence             12347776    999999999999999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.9e-39  Score=368.05  Aligned_cols=345  Identities=18%  Similarity=0.272  Sum_probs=287.6

Q ss_pred             CCCCCcc-----ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCcccc
Q 005235          290 KLPGHEE-----SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK  361 (707)
Q Consensus       290 ~lpgh~~-----synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k  361 (707)
                      .+.+|..     +|+|++.+|++.+.   ++.|+.            ....++.+.++...       +..+.++|+.  
T Consensus       216 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~------------~~~~~~~~~~~~~~-------v~~v~~~~d~--  274 (577)
T 2ymu_A          216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR------------NGQLLQTLTGHSSS-------VNGVAFRPDG--  274 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT------------TSCEEEEECCCSSC-------EEEEEECTTS--
T ss_pred             EEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC------------CCCEEEEEecCCCC-------EEEEEEcCCC--
Confidence            3455654     69999999988544   344431            22334444444333       3556666544  


Q ss_pred             ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCC
Q 005235          362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQ  440 (707)
Q Consensus       362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~  440 (707)
                                                 ..+++++.|++|++|+. +++++..+.. ...|.+++|+|++ ..+++++.++
T Consensus       275 ---------------------------~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~  325 (577)
T 2ymu_A          275 ---------------------------QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDK  325 (577)
T ss_dssp             ---------------------------SEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             ---------------------------CEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCC-CEEEEEeCCC
Confidence                                       48999999999999996 5677777776 7899999999999 4788888999


Q ss_pred             eEEEEECCCCCc-hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC
Q 005235          441 DVLILNTGLGNE-EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP  514 (707)
Q Consensus       441 ~V~lwd~~~~~~-~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~  514 (707)
                      .|++|+...... .+..+...+.++.++     +++++.++.+++|+..+.....+..|...|.+++|+|+|++|++++.
T Consensus       326 ~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~  405 (577)
T 2ymu_A          326 TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD  405 (577)
T ss_dssp             CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             eEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeC
Confidence            999999876533 345566777777765     78889999999999877777678899999999999999999999999


Q ss_pred             CCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 005235          515 AGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG  592 (707)
Q Consensus       515 dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg  592 (707)
                      |+   .|++|+... +.. ..+ .|...|.+++|+|++.+|++++ |+.|++||+ +++.+..+.+|...|.+++|+|+|
T Consensus       406 d~---~v~~~~~~~-~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~  479 (577)
T 2ymu_A          406 DK---TVKLWNRNG-QLL-QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG  479 (577)
T ss_dssp             TS---EEEEECTTC-CEE-EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS
T ss_pred             CC---EEEEEeCCC-CEE-EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCC
Confidence            88   999999654 444 566 8999999999999999999998 899999996 567888999999999999999999


Q ss_pred             CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC
Q 005235          593 DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG  672 (707)
Q Consensus       593 ~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g  672 (707)
                      .+|++|+.|+.|++||.. + ++++.+.+|...|++++|+|++++||+++.||+|+|||      . ++.   ++..+.+
T Consensus       480 ~~las~~~d~~i~iw~~~-~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd------~-~~~---~~~~~~~  547 (577)
T 2ymu_A          480 QTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN------R-NGQ---LLQTLTG  547 (577)
T ss_dssp             CEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC------T-TSC---EEEEEEC
T ss_pred             CEEEEEeCCCEEEEEcCC-C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe------C-CCC---EEEEEcC
Confidence            999999999999999964 4 78899999999999999999999999999999999994      3 222   4788999


Q ss_pred             CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          673 HTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       673 h~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      |...    |++++|+|++++|+|+|.|++|++||
T Consensus       548 h~~~----v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          548 HSSS----VWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CSSC----EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCC----EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            9988    99999999999999999999999997

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-39  Score=356.73  Aligned_cols=266  Identities=19%  Similarity=0.259  Sum_probs=241.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++|+.||+|+|||+.+++++.++.+ .+.|.+|+|+|++. .|++++.|++|++||+.++..               
T Consensus       121 ~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~---------------  184 (410)
T 1vyh_C          121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFEC---------------  184 (410)
T ss_dssp             SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCE---------------
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce---------------
Confidence            4899999999999999999999999887 78999999999994 788889999999999865421               


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                         ...+.+|...|.+++|+|+|++|++++.|+   .|++||+.++... ..+ .|...|.+++
T Consensus       185 -------------------~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~---~i~~wd~~~~~~~-~~~~~h~~~v~~~~  241 (410)
T 1vyh_C          185 -------------------IRTMHGHDHNVSSVSIMPNGDHIVSASRDK---TIKMWEVQTGYCV-KTFTGHREWVRMVR  241 (410)
T ss_dssp             -------------------EECCCCCSSCEEEEEECSSSSEEEEEETTS---EEEEEETTTCCEE-EEEECCSSCEEEEE
T ss_pred             -------------------eEEEcCCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCcEE-EEEeCCCccEEEEE
Confidence                               112457999999999999999999999998   9999999999887 788 8999999999


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC--------------------CCEEEEEECCCcEE
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA--------------------GDNLIVGSREGKLC  605 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd--------------------g~~L~sGs~Dg~I~  605 (707)
                      |+|++.+|++++ |++|++||+.++++...+.+|...|.+++|+|+                    |.+|++|+.|+.|+
T Consensus       242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~  321 (410)
T 1vyh_C          242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  321 (410)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence            999999999998 999999999999999999999999999999996                    67999999999999


Q ss_pred             EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEE
Q 005235          606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCK  685 (707)
Q Consensus       606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~  685 (707)
                      +||+.++ .++..+.+|...|++++|+|++.+|++|+.||+|+|||      +....   ++..+.+|...    |++++
T Consensus       322 iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd------~~~~~---~~~~~~~h~~~----v~~l~  387 (410)
T 1vyh_C          322 MWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD------YKNKR---CMKTLNAHEHF----VTSLD  387 (410)
T ss_dssp             EEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC------CTTSC---CCEEEECCSSC----EEEEE
T ss_pred             EEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE------CCCCc---eEEEEcCCCCc----EEEEE
Confidence            9999987 78899999999999999999999999999999999994      43433   37889999988    99999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeC
Q 005235          686 FHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       686 fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |+|++++|+||+.||+|+||++
T Consensus       388 ~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          388 FHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ECSSSSCEEEEETTSEEEEEC-
T ss_pred             EcCCCCEEEEEeCCCcEEEEeC
Confidence            9999999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.1e-39  Score=342.23  Aligned_cols=267  Identities=17%  Similarity=0.209  Sum_probs=237.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEE--EEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLR--VLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~--~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      +.++++||.|++|+||++.++++..  .+.+ ...|.+++|++++ ..+++++.|++|++||+.++..            
T Consensus        48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~~~------------  114 (321)
T 3ow8_A           48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQ------------  114 (321)
T ss_dssp             -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE------------
T ss_pred             CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCE------------
Confidence            4589999999999999998876543  4444 7889999999999 4788888999999999876521            


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV  543 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~  543 (707)
                                            ...+..|...+.+++|+|+|++|++++.++   .|.+|++..+... ..+ .+...|.
T Consensus       115 ----------------------~~~~~~~~~~~~~~~~spdg~~l~~g~~dg---~v~i~~~~~~~~~-~~~~~~~~~v~  168 (321)
T 3ow8_A          115 ----------------------IKSIDAGPVDAWTLAFSPDSQYLATGTHVG---KVNIFGVESGKKE-YSLDTRGKFIL  168 (321)
T ss_dssp             ----------------------EEEEECCTTCCCCEEECTTSSEEEEECTTS---EEEEEETTTCSEE-EEEECSSSCEE
T ss_pred             ----------------------EEEEeCCCccEEEEEECCCCCEEEEEcCCC---cEEEEEcCCCcee-EEecCCCceEE
Confidence                                  112446778899999999999999999988   9999999998877 777 7888999


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235          544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                      +++|+|++++|++++ |+.|++||+.+++++..+.+|...|.+++|+|+|.+|++|+.|+.|++||+..+ .+...+.+|
T Consensus       169 ~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h  247 (321)
T 3ow8_A          169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGH  247 (321)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-CEEEEECCC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCC
Confidence            999999999999998 999999999999999999999999999999999999999999999999999877 678899999


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235          623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI  702 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I  702 (707)
                      ...|.+++|+|++.+|++|+.||+|+|||+      .+..   ++..+.+|...    |.+++|+|++.+|++++.||+|
T Consensus       248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~------~~~~---~~~~~~~h~~~----v~~v~~s~~g~~l~s~~~d~~i  314 (321)
T 3ow8_A          248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDV------GTRT---CVHTFFDHQDQ----VWGVKYNGNGSKIVSVGDDQEI  314 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEET------TTTE---EEEEECCCSSC----EEEEEECTTSSEEEEEETTCCE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeC------CCCE---EEEEEcCCCCc----EEEEEECCCCCEEEEEeCCCeE
Confidence            999999999999999999999999999954      3333   47889999887    9999999999999999999999


Q ss_pred             EEEeC
Q 005235          703 RLYCH  707 (707)
Q Consensus       703 rlWdl  707 (707)
                      +|||+
T Consensus       315 ~vwd~  319 (321)
T 3ow8_A          315 HIYDC  319 (321)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.8e-38  Score=337.64  Aligned_cols=268  Identities=16%  Similarity=0.211  Sum_probs=235.4

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++|+.||+|+|||+.+++++..+.. ...|.+++|+|++ ..+++++.|+.|++|++.+.....             
T Consensus        68 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~-------------  133 (340)
T 1got_B           68 RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNV-------------  133 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSBSC-------------
T ss_pred             CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCCcc-------------
Confidence            4899999999999999999999988887 7889999999999 478888999999999987642110             


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                       .....+.+|.+.|.++.|++++. |++++.|+   .|++||+.++... ..+ .|.+.|.+++
T Consensus       134 -----------------~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~---~i~~wd~~~~~~~-~~~~~h~~~v~~~~  191 (340)
T 1got_B          134 -----------------RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDT---TCALWDIETGQQT-TTFTGHTGDVMSLS  191 (340)
T ss_dssp             -----------------EEEEEEECCSSCEEEEEEEETTE-EEEEETTS---CEEEEETTTTEEE-EEECCCSSCEEEEE
T ss_pred             -----------------eeEEEecCCCccEEEEEECCCCc-EEEEECCC---cEEEEECCCCcEE-EEEcCCCCceEEEE
Confidence                             00123568999999999998765 88999888   9999999999887 778 8999999999


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec--CC
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC--HP  623 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~--h~  623 (707)
                      |+|++.+|++++ |++|++||+.++.++.++.+|...|++++|+|+|.+|++|+.||.|++||++.. .++..+..  +.
T Consensus       192 ~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~  270 (340)
T 1got_B          192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDNII  270 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCC
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEccCCcc
Confidence            999999999998 999999999999999999999999999999999999999999999999999876 55555542  23


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235          624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR  703 (707)
Q Consensus       624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir  703 (707)
                      ..|++++|+|++++|++|+.||.|+|||+      ....   ++..+.+|...    |.+++|+|++.+|+|||.||+|+
T Consensus       271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~------~~~~---~~~~~~~h~~~----v~~~~~s~dg~~l~s~s~D~~i~  337 (340)
T 1got_B          271 CGITSVSFSKSGRLLLAGYDDFNCNVWDA------LKAD---RAGVLAGHDNR----VSCLGVTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEET------TTCC---EEEEEECCSSC----EEEEEECTTSSCEEEEETTSCEE
T ss_pred             cceEEEEECCCCCEEEEECCCCeEEEEEc------ccCc---EeeEeecCCCc----EEEEEEcCCCCEEEEEcCCccEE
Confidence            57999999999999999999999999954      3333   37789999988    99999999999999999999999


Q ss_pred             EEe
Q 005235          704 LYC  706 (707)
Q Consensus       704 lWd  706 (707)
                      |||
T Consensus       338 iWd  340 (340)
T 1got_B          338 IWN  340 (340)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.3e-37  Score=332.70  Aligned_cols=271  Identities=16%  Similarity=0.209  Sum_probs=236.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++||.||+|+|||..+++....+.. ...|.+++|+|++ ..+++++.|+.+.+|++........            
T Consensus        77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~~------------  143 (354)
T 2pbi_B           77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNENM------------  143 (354)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTCCS------------
T ss_pred             CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEeccccccc------------
Confidence            4899999999999999999999888877 7789999999999 4788888999999999765321100            


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                      ......+..|...|.+++|++++.+|++++.|+   +|++||+.++... ..+ .|...|.+++
T Consensus       144 ----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~---~v~lwd~~~~~~~-~~~~~h~~~v~~~~  203 (354)
T 2pbi_B          144 ----------------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDG---TCALWDVESGQLL-QSFHGHGADVLCLD  203 (354)
T ss_dssp             ----------------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTS---EEEEEETTTCCEE-EEEECCSSCEEEEE
T ss_pred             ----------------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCeEE-EEEcCCCCCeEEEE
Confidence                            011123557999999999999999999999998   9999999999887 788 8999999999


Q ss_pred             EeC--CCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-
Q 005235          547 FHP--TRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-  622 (707)
Q Consensus       547 fsp--d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-  622 (707)
                      |+|  ++.+|++|+ |++|++||+++++++..+.+|...|++++|+|+|.+|++|+.|+.|++||++.. ..+..+..+ 
T Consensus       204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~  282 (354)
T 2pbi_B          204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKES  282 (354)
T ss_dssp             ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCC
Confidence            988  468999988 999999999999999999999999999999999999999999999999999876 555555543 


Q ss_pred             -CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235          623 -PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV  701 (707)
Q Consensus       623 -~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~  701 (707)
                       ...+.+++|+|++.+|++|+.|++|+|||+      .++.   ++..+.+|...    |.+++|+|++.+|++|+.||+
T Consensus       283 ~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~------~~~~---~~~~l~~h~~~----v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDV------LKGS---RVSILFGHENR----VSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEET------TTCS---EEEEECCCSSC----EEEEEECTTSSCEEEEETTSE
T ss_pred             cccceeEEEEeCCCCEEEEEECCCcEEEEEC------CCCc---eEEEEECCCCc----EEEEEECCCCCEEEEEcCCCC
Confidence             347899999999999999999999999954      3333   36788999988    999999999999999999999


Q ss_pred             EEEEe
Q 005235          702 IRLYC  706 (707)
Q Consensus       702 IrlWd  706 (707)
                      |+||+
T Consensus       350 v~vW~  354 (354)
T 2pbi_B          350 LRVWA  354 (354)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.6e-37  Score=353.02  Aligned_cols=339  Identities=17%  Similarity=0.245  Sum_probs=285.4

Q ss_pred             ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCC
Q 005235          297 SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKP  373 (707)
Q Consensus       297 synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp  373 (707)
                      .|+|++.+|++.+.   ++.|+.            ....++.+.++...       +..+.++|+.              
T Consensus       187 ~~~~~~~~l~~~~~d~~v~~w~~------------~~~~~~~~~~~~~~-------v~~~~~s~dg--------------  233 (577)
T 2ymu_A          187 AFSPDGQTIASASDDKTVKLWNR------------NGQLLQTLTGHSSS-------VRGVAFSPDG--------------  233 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECT------------TSCEEEEEECCSSC-------EEEEEECTTS--------------
T ss_pred             eecCCCCEEEEEcCCCEEEEEeC------------CCcEEEEEecCCCC-------EEEEEECCCC--------------
Confidence            69999999998554   344431            22334444444333       3556666554              


Q ss_pred             CCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCC-
Q 005235          374 KLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN-  451 (707)
Q Consensus       374 ~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~-  451 (707)
                                     .++++|+.|++|++|+. +++++..+.. ...|.+++|+|++ ..+++++.++.|++|+..... 
T Consensus       234 ---------------~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~~~~~~  296 (577)
T 2ymu_A          234 ---------------QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNRNGQLL  296 (577)
T ss_dssp             ---------------SCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEE
T ss_pred             ---------------CEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCcEE
Confidence                           47999999999999995 5778877776 7899999999999 478888899999999975432 


Q ss_pred             chhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEEC
Q 005235          452 EEEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQL  526 (707)
Q Consensus       452 ~~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl  526 (707)
                      ..+.++...+.++.+.     +++++.++.+++|+..+.....+.+|...|.+++|+|+|.+|++++.++   .|++|+.
T Consensus       297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~v~~~~~  373 (577)
T 2ymu_A          297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK---TVKLWNR  373 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEET
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC---EEEEEcC
Confidence            2445677778877775     7888999999999998887777889999999999999999999999988   9999996


Q ss_pred             CCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 005235          527 SKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKL  604 (707)
Q Consensus       527 ~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I  604 (707)
                      .. ... ..+ .|...|.+++|+|++.+|++++ |+.|++||. +++++..+.+|...|++++|+|++.+|++++.|+.|
T Consensus       374 ~~-~~~-~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v  450 (577)
T 2ymu_A          374 NG-QLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV  450 (577)
T ss_dssp             TC-CEE-EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CC-CEE-EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence            54 444 566 8899999999999999999998 899999995 577888999999999999999999999999999999


Q ss_pred             EEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235          605 CWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC  684 (707)
Q Consensus       605 ~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l  684 (707)
                      ++||+. + +.+..+.+|...|++++|+|++++||+++.|++|+||+.       ++   .++..+.+|...    |+++
T Consensus       451 ~~w~~~-~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-------~~---~~~~~~~~h~~~----v~~l  514 (577)
T 2ymu_A          451 KLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-------NG---QLLQTLTGHSSS----VRGV  514 (577)
T ss_dssp             EEEETT-S-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-------TS---CEEEEEECCSSC----EEEE
T ss_pred             EEEECC-C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-------CC---CEEEEEeCCCCC----EEEE
Confidence            999974 3 678889999999999999999999999999999999953       22   247889999987    9999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeC
Q 005235          685 KFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       685 ~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +|+|++++||+++.||+|+|||+
T Consensus       515 ~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          515 AFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECT
T ss_pred             EEcCCCCEEEEEECcCEEEEEeC
Confidence            99999999999999999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.8e-38  Score=337.84  Aligned_cols=269  Identities=17%  Similarity=0.206  Sum_probs=221.7

Q ss_pred             CCcEEEEEeCCCcEEEEeCC------------CCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh
Q 005235          387 ACYLEYKGSTDGTVRIWEVE------------SGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE  454 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~------------tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~  454 (707)
                      ++.++++++ |+++|+||..            .+.+...+.....|.+++|+|++  .+++++.|++|+|||+.++....
T Consensus        41 dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~  117 (344)
T 4gqb_B           41 DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--GILVASDSGAVELWELDENETLI  117 (344)
T ss_dssp             TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCE
T ss_pred             CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCcee
Confidence            345788777 7788888732            12233344446789999999998  79999999999999987763321


Q ss_pred             cccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee
Q 005235          455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI  534 (707)
Q Consensus       455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~  534 (707)
                                              .      ......+|.+.|++|+|+|+|++|++++.|+   .|+|||+.++... .
T Consensus       118 ------------------------~------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~---~i~iwd~~~~~~~-~  163 (344)
T 4gqb_B          118 ------------------------V------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI---CIKVWDLAQQVVL-S  163 (344)
T ss_dssp             ------------------------E------EEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE-E
T ss_pred             ------------------------E------eeccccCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEE-E
Confidence                                    0      0012458999999999999999999999998   9999999999888 8


Q ss_pred             ee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCC-CCEEEEEECCCcEEEEE
Q 005235          535 PF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPA-GDNLIVGSREGKLCWFD  608 (707)
Q Consensus       535 ~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwD  608 (707)
                      .+ .|.+.|.+++|+|++. +|++++ |++|++||+++++++..+.  .+...+.+++|+|+ +.+|++|+.||.|++||
T Consensus       164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd  243 (344)
T 4gqb_B          164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD  243 (344)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEE
Confidence            88 8999999999999985 677777 9999999999998887764  34456999999995 57889999999999999


Q ss_pred             CCCCCcceEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc
Q 005235          609 MDLSSKPYRVLKCHPKDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH  687 (707)
Q Consensus       609 l~~~~~~~~~l~~h~~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs  687 (707)
                      ++++ +++.++.+|...|++++|+|++ ++||+|+.||+|+|||      +.+..    +..+.+|...    |++++|+
T Consensus       244 ~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd------~~~~~----~~~~~~H~~~----V~~v~~s  308 (344)
T 4gqb_B          244 TKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD------SSLSE----LFRSQAHRDF----VRDATWS  308 (344)
T ss_dssp             SCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEEC------TTCCE----EEEECCCSSC----EEEEEEC
T ss_pred             CCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEE------CCCCc----EEEEcCCCCC----EEEEEEe
Confidence            9987 7889999999999999999998 5899999999999994      44443    4467899987    9999999


Q ss_pred             CCCC-EEEEEeCCCcEEEEeC
Q 005235          688 PRQP-WLFTAGADSVIRLYCH  707 (707)
Q Consensus       688 pdg~-~L~s~g~Dg~IrlWdl  707 (707)
                      |+++ +|+|+|.||+|++|++
T Consensus       309 p~~~~llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          309 PLNHSLLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             SSSTTEEEEEETTSCEEEEEC
T ss_pred             CCCCeEEEEEcCCCeEEEEEC
Confidence            9987 5679999999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.7e-37  Score=331.85  Aligned_cols=279  Identities=20%  Similarity=0.271  Sum_probs=225.7

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEE--E-e-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRV--L-E-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~--l-~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      .+|++|+.|++|+||++.++.....  + . +...|.+|+|+|++ ..|++++.|++|++|++..+...           
T Consensus        29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~~~-----------   96 (345)
T 3fm0_A           29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDFE-----------   96 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-EE-----------
T ss_pred             CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCCeE-----------
Confidence            4899999999999999998875433  2 2 27899999999999 47888889999999997654210           


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee-ccCCC
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF-KLHGL  541 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~-~~~~~  541 (707)
                                           ....+.+|...|.+++|+|+|++|++++.|+   .|++||+......  ...+ .|...
T Consensus        97 ---------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~h~~~  152 (345)
T 3fm0_A           97 ---------------------CVTTLEGHENEVKSVAWAPSGNLLATCSRDK---SVWVWEVDEEDEYECVSVLNSHTQD  152 (345)
T ss_dssp             ---------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEEECTTSCEEEEEEECCCCSC
T ss_pred             ---------------------EEEEccCCCCCceEEEEeCCCCEEEEEECCC---eEEEEECCCCCCeEEEEEecCcCCC
Confidence                                 0123568999999999999999999999998   9999999876432  1345 78899


Q ss_pred             eEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-----
Q 005235          542 PVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-----  613 (707)
Q Consensus       542 V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-----  613 (707)
                      |.+++|+|++.+|++++ |+.|++||+.++.  +..++.+|...|.+++|+|+|.+|++|+.|+.|++||+....     
T Consensus       153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~  232 (345)
T 3fm0_A          153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV  232 (345)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccc
Confidence            99999999999999998 9999999998875  457888999999999999999999999999999999974321     


Q ss_pred             ---------cceEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE
Q 005235          614 ---------KPYRVLKC-HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD  683 (707)
Q Consensus       614 ---------~~~~~l~~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~  683 (707)
                               .++.++.+ |...|.+++|+|++.+||+++.|++|+||+.....+............+.+|...    |++
T Consensus       233 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~----V~~  308 (345)
T 3fm0_A          233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD----VNC  308 (345)
T ss_dssp             CCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC----EEE
T ss_pred             eeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc----EeE
Confidence                     12334444 8899999999999999999999999999976533221111111112334688877    999


Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEEeC
Q 005235          684 CKFHPRQP-WLFTAGADSVIRLYCH  707 (707)
Q Consensus       684 l~fspdg~-~L~s~g~Dg~IrlWdl  707 (707)
                      ++|+|+++ +|||||.||+|+||++
T Consensus       309 v~~~p~~~~~laS~s~Dg~v~~W~~  333 (345)
T 3fm0_A          309 VAWNPKEPGLLASCSDDGEVAFWKY  333 (345)
T ss_dssp             EEECSSSTTEEEEEETTSCEEEEEE
T ss_pred             eEEeCCCceEEEEcCCCCcEEEEEe
Confidence            99999985 9999999999999984

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.3e-36  Score=320.45  Aligned_cols=266  Identities=14%  Similarity=0.163  Sum_probs=228.5

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++|+.||+|+|||+.++.++..+.. ..+|.+++|+|++ ..|++++.|+.|++||+.++..               
T Consensus        26 ~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~---------------   89 (304)
T 2ynn_A           26 PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEK---------------   89 (304)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCE---------------
T ss_pred             CEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCCCcE---------------
Confidence            4899999999999999999999999987 7899999999999 4788899999999999876532               


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                         ...+.+|...|.+++|+|++.+|++++.|+   +|++||+.++......+ .|...|.+++
T Consensus        90 -------------------~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~---~v~lWd~~~~~~~~~~~~~h~~~v~~v~  147 (304)
T 2ynn_A           90 -------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDL---TVKLWNWENNWALEQTFEGHEHFVMCVA  147 (304)
T ss_dssp             -------------------EEEEECCSSCEEEEEECSSSSEEEEEETTS---CEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred             -------------------EEEEeCCCCcEEEEEEcCCCCEEEEECCCC---eEEEEECCCCcchhhhhcccCCcEEEEE
Confidence                               123568999999999999999999999998   99999998875543566 8999999999


Q ss_pred             EeC-CCCEEEEEe-CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcC--CCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235          547 FHP-TRSIFFVST-KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHP--AGDNLIVGSREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       547 fsp-d~~~l~v~s-dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~sp--dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                      |+| ++.+|++|+ |++|++||+.++.....+. .+...+.+++|+|  ++.+|++|+.|+.|++||++++ .++.++.+
T Consensus       148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~  226 (304)
T 2ynn_A          148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEG  226 (304)
T ss_dssp             ECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEEEEC
T ss_pred             ECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCC
Confidence            999 578899988 9999999998876655555 4557799999987  6789999999999999999987 78999999


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC--EEEEEeCC
Q 005235          622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP--WLFTAGAD  699 (707)
Q Consensus       622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~--~L~s~g~D  699 (707)
                      |...|.+++|+|++++|++|+.||+|+|||.      .+..   ++..+..|...    +.+++|+|++.  +|++|+.|
T Consensus       227 h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~------~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~asg~~~  293 (304)
T 2ynn_A          227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNS------STYK---VEKTLNVGLER----SWCIATHPTGRKNYIASGFDN  293 (304)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEET------TTCC---EEEEECCSSSS----EEEEEECTTCGGGCEEEEETT
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCeEEEEEC------CCCc---eeeeccCCCcc----EEEEEECCCCCceEEEEecCC
Confidence            9999999999999999999999999999954      3443   37788888877    99999999886  57777766


Q ss_pred             CcEEEEeC
Q 005235          700 SVIRLYCH  707 (707)
Q Consensus       700 g~IrlWdl  707 (707)
                      | +.+|++
T Consensus       294 g-~~~~~~  300 (304)
T 2ynn_A          294 G-FTVLSL  300 (304)
T ss_dssp             E-EEEEEC
T ss_pred             c-eEEEEe
Confidence            5 555543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.6e-37  Score=335.36  Aligned_cols=301  Identities=17%  Similarity=0.238  Sum_probs=247.2

Q ss_pred             ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEe
Q 005235          325 FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWE  404 (707)
Q Consensus       325 ~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd  404 (707)
                      |.|....+.+.+.+|...|       ..+.|+|+.                             .+|++||.||+|+|||
T Consensus        51 ~~~~~~~~~~~l~gH~~~V-------~~~~~sp~~-----------------------------~~l~s~s~D~~v~iWd   94 (380)
T 3iz6_a           51 FNPTDLVCCRTLQGHSGKV-------YSLDWTPEK-----------------------------NWIVSASQDGRLIVWN   94 (380)
T ss_dssp             CCCCCCEEEEEECCCSSCE-------EEEEECTTS-----------------------------SCEEEEETTSEEEEEE
T ss_pred             cccceeEEeecccccccEE-------EEEEEcCCC-----------------------------CEEEEEeCCCeEEEEE
Confidence            4455555666665555544       778888765                             4899999999999999


Q ss_pred             CCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecC
Q 005235          405 VESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQH  483 (707)
Q Consensus       405 ~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~  483 (707)
                      +.+++++..+.. ...|.+++|+|++ ..+++++.|+.|++|++.+.....                    +       .
T Consensus        95 ~~~~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~~--------------------~-------~  146 (380)
T 3iz6_a           95 ALTSQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRD--------------------G-------N  146 (380)
T ss_dssp             TTTTEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSCC--------------------C-------S
T ss_pred             CCCCccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCcccc--------------------C-------C
Confidence            999999998887 7889999999999 478888899999999986542100                    0       0


Q ss_pred             CccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCceeeeee------ccCCCeEEEEEeC-CCCEEE
Q 005235          484 DKLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF------KLHGLPVSSVFHP-TRSIFF  555 (707)
Q Consensus       484 ~~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~------~~~~~V~~v~fsp-d~~~l~  555 (707)
                      ......+.+|.+.|.++.|+|+ +..|++++.|+   +|++||+.++... ..+      .|...|.+++|++ ++.+|+
T Consensus       147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~---~i~~wd~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  222 (380)
T 3iz6_a          147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ---TCVLWDVTTGQRI-SIFGSEFPSGHTADVLSLSINSLNANMFI  222 (380)
T ss_dssp             STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTS---CEEEECTTTCCEE-EEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred             ccceeeccCCCcceEEEEEecCCCCEEEEECCCC---cEEEEEcCCCcEE-EEeecccCCCCccCeEEEEeecCCCCEEE
Confidence            0011235589999999999996 45799999988   9999999998776 433      5778899999987 788999


Q ss_pred             EEe-CCeEEEEECC-CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-------CCE
Q 005235          556 VST-KKNIRVYDLL-KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-------KDI  626 (707)
Q Consensus       556 v~s-dg~I~iwDl~-~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-------~~I  626 (707)
                      +|+ |++|++||++ .++.+..+.+|...|.+++|+|+|.+|++|+.||+|++||+.++ .++..+..+.       ..|
T Consensus       223 sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~v  301 (380)
T 3iz6_a          223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-HQLQVYNREPDRNDNELPIV  301 (380)
T ss_dssp             EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT-EEEEEECCCCSSSCCSSCSC
T ss_pred             EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC-cEEEEecccccccccccCce
Confidence            988 9999999998 45778889999999999999999999999999999999999987 6677776543       248


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe----eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235          627 TNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL----RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI  702 (707)
Q Consensus       627 ~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l----~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I  702 (707)
                      ++++|+|+|.+|++|+.||.|+|||.      .....   +..+    .+|...    |.+++|+|++.+|+|||.||+|
T Consensus       302 ~~~~~s~~g~~l~~g~~dg~i~vwd~------~~~~~---~~~~~~~~~~h~~~----v~~l~~s~dg~~l~sgs~D~~i  368 (380)
T 3iz6_a          302 TSVAFSISGRLLFAGYSNGDCYVWDT------LLAEM---VLNLGTLQNSHEGR----ISCLGLSSDGSALCTGSWDKNL  368 (380)
T ss_dssp             SEEEECSSSSEEEEECTTSCEEEEET------TTCCE---EEEECCSCSSCCCC----CCEEEECSSSSEEEEECTTSCE
T ss_pred             EEEEECCCCCEEEEEECCCCEEEEEC------CCCce---EEEEecccCCCCCc----eEEEEECCCCCEEEEeeCCCCE
Confidence            99999999999999999999999954      33333   3334    578877    9999999999999999999999


Q ss_pred             EEEeC
Q 005235          703 RLYCH  707 (707)
Q Consensus       703 rlWdl  707 (707)
                      +||++
T Consensus       369 ~iW~~  373 (380)
T 3iz6_a          369 KIWAF  373 (380)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.8e-37  Score=329.51  Aligned_cols=268  Identities=17%  Similarity=0.209  Sum_probs=219.6

Q ss_pred             cEEEEEeC------CCcEEEEeCCCCeEE-----EEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc
Q 005235          389 YLEYKGST------DGTVRIWEVESGRCL-----RVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR  457 (707)
Q Consensus       389 ~~l~sgs~------DgtVrIWd~~tg~~l-----~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~  457 (707)
                      .+|++||.      |++|++|+..++...     ....+...|.+|+|+|++  .+++++.+++|+|||+.++.....  
T Consensus        55 ~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~--  130 (357)
T 4g56_B           55 ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK--GILVASDSGAVELWEILEKESLLV--  130 (357)
T ss_dssp             CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT--EEEEEETTSCEEEC--------CC--
T ss_pred             CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC--CEEEEECCCEEEEeeccccceeEE--
Confidence            48999997      788999998887543     334457889999999998  688999999999999876532110  


Q ss_pred             ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-
Q 005235          458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-  536 (707)
Q Consensus       458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-  536 (707)
                                                  ......+|...|.+++|+|+|++|++++.|+   .|+|||+.++... ..+ 
T Consensus       131 ----------------------------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg---~v~iwd~~~~~~~-~~~~  178 (357)
T 4g56_B          131 ----------------------------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF---SVKVWDLSQKAVL-KSYN  178 (357)
T ss_dssp             ----------------------------CCEEECCCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTTEEE-EEEC
T ss_pred             ----------------------------EeeccCCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEE-EEEc
Confidence                                        0012447999999999999999999999998   9999999999887 788 


Q ss_pred             ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCC
Q 005235          537 KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~  611 (707)
                      .|...|.+++|+|++. +|++++ |+.|++||+++++++..+.  .+...+.+++|+|++ .+|++|+.|+.|++||+.+
T Consensus       179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred             CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence            8999999999999875 566666 8999999999987765544  455679999999975 6889999999999999998


Q ss_pred             CCcceEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC-C
Q 005235          612 SSKPYRVLKCHPKDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP-R  689 (707)
Q Consensus       612 ~~~~~~~l~~h~~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp-d  689 (707)
                      + +++..+.+|...|++++|+|++ ++||+|+.||+|+|||      +.+...   + ...+|...    |++|+|+| +
T Consensus       259 ~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd------~~~~~~---~-~~~~H~~~----V~~vafsP~d  323 (357)
T 4g56_B          259 P-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD------ADFSEV---F-RDLSHRDF----VTGVAWSPLD  323 (357)
T ss_dssp             G-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC------TTSCEE---E-EECCCSSC----EEEEEECSSS
T ss_pred             C-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE------CCCCcE---e-EECCCCCC----EEEEEEeCCC
Confidence            7 7889999999999999999987 5899999999999994      444432   3 34589887    99999999 7


Q ss_pred             CCEEEEEeCCCcEEEEeC
Q 005235          690 QPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       690 g~~L~s~g~Dg~IrlWdl  707 (707)
                      +.+|+|+|.||+|++|++
T Consensus       324 ~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          324 HSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             TTEEEEEETTSCEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEC
Confidence            899999999999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-36  Score=318.49  Aligned_cols=275  Identities=20%  Similarity=0.227  Sum_probs=213.8

Q ss_pred             EEEEEeCCCcEEEEeCCCC--eEEEEEe---cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          390 LEYKGSTDGTVRIWEVESG--RCLRVLE---IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg--~~l~~l~---~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      ++++|+.|++|+||++.++  .++..+.   +...|.+|+|+|++ ..|++++.|++|+||++.......          
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~----------   94 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRT----------   94 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC-----------------
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCcc----------
Confidence            8999999999999999875  5566662   47789999999999 478888899999999975421000          


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC----ceeeeee-ccC
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK----LSHRIPF-KLH  539 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~----~~~~~~~-~~~  539 (707)
                                       ........+.+|...|.+++|+|+|++|++++.|+   .|+|||+...    ... ..+ .|.
T Consensus        95 -----------------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~---~v~iwd~~~~~~~~~~~-~~~~~h~  153 (330)
T 2hes_X           95 -----------------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK---SVWIWETDESGEEYECI-SVLQEHS  153 (330)
T ss_dssp             -----------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTS---CEEEEECCTTCCCCEEE-EEECCCS
T ss_pred             -----------------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC---EEEEEeccCCCCCeEEE-EEeccCC
Confidence                             00011123568999999999999999999999998   9999999532    223 456 889


Q ss_pred             CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC--eEEEEEeCCCCCeEEEEEcCC--CCEEEEEECCCcEEEEECCCCC-
Q 005235          540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ--RLIKKLETGLKEVSSIAIHPA--GDNLIVGSREGKLCWFDMDLSS-  613 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~--~~~~~l~~~~~~I~sl~~spd--g~~L~sGs~Dg~I~vwDl~~~~-  613 (707)
                      ..|.+++|+|++.+|++++ |++|++||+.++  +++..+.+|...|.+++|+|+  +.+|++|+.|++|++||+.... 
T Consensus       154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~  233 (330)
T 2hes_X          154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE  233 (330)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred             CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence            9999999999999999998 999999998876  678899999999999999998  7799999999999999986531 


Q ss_pred             ------cceEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC-CCCCCeeEEE
Q 005235          614 ------KPYRVLKC-HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS-SNGRGVMDCK  685 (707)
Q Consensus       614 ------~~~~~l~~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~-~~~~gV~~l~  685 (707)
                            .+...+.. |...|.+++|++++ +||+|+.||+|+||+..      .+........+.+|.. .    |.+++
T Consensus       234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~------~~~~~~~~~~~~~h~~~~----v~~v~  302 (330)
T 2hes_X          234 DDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV------DGEWKVFAKRALCHGVYE----INVVK  302 (330)
T ss_dssp             TSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE------TTEEEEEEEESCTTTTSC----EEEEE
T ss_pred             cccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC------CCceEEEeccccccccce----EEEEE
Confidence                  23344544 89999999999765 89999999999999643      2211111233467775 5    99999


Q ss_pred             EcC--CCCEEEEEeCCCcEEEEeC
Q 005235          686 FHP--RQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       686 fsp--dg~~L~s~g~Dg~IrlWdl  707 (707)
                      |+|  ++.+|+|||.||+|+||++
T Consensus       303 ~~~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          303 WLELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             EC-----CCEEEEETTSEEEEEEC
T ss_pred             EecCCCceEEEEecCCCcEEEEEe
Confidence            999  7899999999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-35  Score=323.37  Aligned_cols=268  Identities=16%  Similarity=0.182  Sum_probs=229.0

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEecC-------------------CcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIG-------------------EAIQYVAWNPLPELPVLAVSVGQDVLILNT  447 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~-------------------~~V~~v~~spdg~~~lla~s~d~~V~lwd~  447 (707)
                      ++.++++|+ +++++||++.+|+++..+...                   ..|.+++|+|++ ..|++++.|+.|++||+
T Consensus        75 dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~  152 (393)
T 1erj_A           75 DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDI  152 (393)
T ss_dssp             TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEET
T ss_pred             CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC-CEEEEEcCCCeEEEEEC
Confidence            345888876 789999999999998877541                   149999999999 47888889999999997


Q ss_pred             CCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC
Q 005235          448 GLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS  527 (707)
Q Consensus       448 ~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~  527 (707)
                      .++..                                  ...+.+|...|.+++|+|+|.+|++++.|+   .|++||+.
T Consensus       153 ~~~~~----------------------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~---~v~iwd~~  195 (393)
T 1erj_A          153 ENRKI----------------------------------VMILQGHEQDIYSLDYFPSGDKLVSGSGDR---TVRIWDLR  195 (393)
T ss_dssp             TTTEE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETT
T ss_pred             CCCcE----------------------------------EEEEccCCCCEEEEEEcCCCCEEEEecCCC---cEEEEECC
Confidence            65421                                  123568999999999999999999999998   99999999


Q ss_pred             CCceeeeeeccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEECCCCeEEEEE-------eCCCCCeEEEEEcCCCCEEEEE
Q 005235          528 KKLSHRIPFKLHGLPVSSVFHP-TRSIFFVST-KKNIRVYDLLKQRLIKKL-------ETGLKEVSSIAIHPAGDNLIVG  598 (707)
Q Consensus       528 ~~~~~~~~~~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwDl~~~~~~~~l-------~~~~~~I~sl~~spdg~~L~sG  598 (707)
                      ++... ..+.+...+.+++|+| ++.+|++++ |+.|++||+.++.++..+       .+|...|.+++|+|+|.+|++|
T Consensus       196 ~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~  274 (393)
T 1erj_A          196 TGQCS-LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG  274 (393)
T ss_dssp             TTEEE-EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCeeE-EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence            98876 6667778899999999 899999998 999999999999888777       5688899999999999999999


Q ss_pred             ECCCcEEEEECCCCC-----------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccce
Q 005235          599 SREGKLCWFDMDLSS-----------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPL  667 (707)
Q Consensus       599 s~Dg~I~vwDl~~~~-----------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl  667 (707)
                      +.|+.|++||+....           .+...+.+|...|.+++|+|++.+|++|+.||+|+|||.      .+..   ++
T Consensus       275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~------~~~~---~~  345 (393)
T 1erj_A          275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK------KSGN---PL  345 (393)
T ss_dssp             ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET------TTCC---EE
T ss_pred             eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC------CCCe---EE
Confidence            999999999997531           345678899999999999999999999999999999954      3333   47


Q ss_pred             EEeeCCCCCCCCCeeEEEEcC------CCCEEEEEeCCCcEEEEeC
Q 005235          668 EILRGHTSSNGRGVMDCKFHP------RQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       668 ~~l~gh~~~~~~gV~~l~fsp------dg~~L~s~g~Dg~IrlWdl  707 (707)
                      ..+.+|...    |.+++|++      ++.+|+|||.||+|+||++
T Consensus       346 ~~l~~h~~~----v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          346 LMLQGHRNS----VISVAVANGSSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             EEEECCSSC----EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EEECCCCCC----EEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence            889999987    99999986      6889999999999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3e-35  Score=312.41  Aligned_cols=263  Identities=14%  Similarity=0.199  Sum_probs=221.9

Q ss_pred             cEEEEEeCCCcEEEEeCCC-----CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          389 YLEYKGSTDGTVRIWEVES-----GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~t-----g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      .++++||.|++|++|++.+     +.++..+.+ ...|.+++|+|++ ..+++++.|++|++||+.++..          
T Consensus        31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~~----------   99 (319)
T 3frx_A           31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVATGET----------   99 (319)
T ss_dssp             TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----------
T ss_pred             cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCe----------
Confidence            5899999999999999864     445667766 7899999999999 4788899999999999876521          


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL  541 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~  541 (707)
                                              ...+.+|...|.+++|+|++.+|++++.|+   .|++||+... .. ..+ .|...
T Consensus       100 ------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~---~i~vwd~~~~-~~-~~~~~h~~~  150 (319)
T 3frx_A          100 ------------------------YQRFVGHKSDVMSVDIDKKASMIISGSRDK---TIKVWTIKGQ-CL-ATLLGHNDW  150 (319)
T ss_dssp             ------------------------EEEEECCSSCEEEEEECTTSCEEEEEETTS---CEEEEETTSC-EE-EEECCCSSC
T ss_pred             ------------------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCC-eE-EEEeccCCc
Confidence                                    123568999999999999999999999998   9999999754 33 555 89999


Q ss_pred             eEEEEEeCCC------CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235          542 PVSSVFHPTR------SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK  614 (707)
Q Consensus       542 V~~v~fspd~------~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~  614 (707)
                      |.+++|+|..      ..|++++ |+.|++||+.+.+....+.+|...|.+++|+|+|.+|++|+.||.|++||+.+. +
T Consensus       151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~  229 (319)
T 3frx_A          151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-K  229 (319)
T ss_dssp             EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-E
T ss_pred             EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-c
Confidence            9999999954      4788887 999999999999999999999999999999999999999999999999999876 7


Q ss_pred             ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee--------CCCCCCCCCeeEEEE
Q 005235          615 PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR--------GHTSSNGRGVMDCKF  686 (707)
Q Consensus       615 ~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~--------gh~~~~~~gV~~l~f  686 (707)
                      ++..+..+ ..|.+++|+|++.+|++++.++ |++|++..      ...   +..+.        .|...    |.+++|
T Consensus       230 ~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~------~~~---~~~~~~~~~~~~~~~~~~----v~~~~~  294 (319)
T 3frx_A          230 AMYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSLDP------QYL---VDDLRPEFAGYSKAAEPH----AVSLAW  294 (319)
T ss_dssp             EEEEEECC-SCEEEEEECSSSSEEEEEETTE-EEEEEETT------EEE---EEEECCCCTTCCGGGCCC----EEEEEE
T ss_pred             EEEEecCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEEeCc------Cee---eeccCccccccccCcCcc----eeEEEE
Confidence            77778754 6799999999999999888655 99996532      111   22222        23333    999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeC
Q 005235          687 HPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       687 spdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +|+|++|++|+.||+|+||++
T Consensus       295 spdg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          295 SADGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             CTTSSEEEEEETTSCEEEEEE
T ss_pred             CCCCCEEEEeecCceEEEEEE
Confidence            999999999999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.1e-36  Score=329.94  Aligned_cols=280  Identities=16%  Similarity=0.231  Sum_probs=240.6

Q ss_pred             CCCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCcc
Q 005235          287 PKPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRV  359 (707)
Q Consensus       287 pk~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~  359 (707)
                      ++..|.||..     .|+|++.+|++++.          |..+  |.......++.+.++..       .+.++.|+|.+
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~----------Dg~i~vwd~~~~~~~~~l~~h~~-------~V~~v~~~~~~  162 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASE----------DATIKVWDYETGDFERTLKGHTD-------SVQDISFDHSG  162 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEES----------SSCEEEEETTTCCCCEEECCCSS-------CEEEEEECTTS
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCcEEEEEeccCC-------cEEEEEEcCCC
Confidence            3567889976     59999999999654          4443  33344444555544444       34677777654


Q ss_pred             ccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe
Q 005235          360 RKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV  438 (707)
Q Consensus       360 ~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~  438 (707)
                                                   .++++|+.||+|+|||+.+++++.++.. ...|.+++|+|+++ .+++++.
T Consensus       163 -----------------------------~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~  212 (410)
T 1vyh_C          163 -----------------------------KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASR  212 (410)
T ss_dssp             -----------------------------SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEET
T ss_pred             -----------------------------CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC-EEEEEeC
Confidence                                         4899999999999999999999988876 78999999999994 7889999


Q ss_pred             CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc
Q 005235          439 GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES  518 (707)
Q Consensus       439 d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~  518 (707)
                      |++|++||+.++..                                  ...+.+|...|.+++|+++|.+|++++.|+  
T Consensus       213 D~~i~~wd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~--  256 (410)
T 1vyh_C          213 DKTIKMWEVQTGYC----------------------------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQ--  256 (410)
T ss_dssp             TSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred             CCeEEEEECCCCcE----------------------------------EEEEeCCCccEEEEEECCCCCEEEEEcCCC--
Confidence            99999999876522                                  113558999999999999999999999998  


Q ss_pred             cEEEEEECCCCceeeeee-ccCCCeEEEEEeCC--------------------CCEEEEEe-CCeEEEEECCCCeEEEEE
Q 005235          519 RAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT--------------------RSIFFVST-KKNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       519 ~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd--------------------~~~l~v~s-dg~I~iwDl~~~~~~~~l  576 (707)
                       .|++||+.++... ..+ .|...|.+++|+|+                    +.+|++|+ |++|++||+.++.++.++
T Consensus       257 -~v~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~  334 (410)
T 1vyh_C          257 -TVRVWVVATKECK-AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  334 (410)
T ss_dssp             -CEEEEETTTCCEE-EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             -eEEEEECCCCcee-eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence             9999999998887 777 89999999999996                    67899988 999999999999999999


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       577 ~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      .+|..+|.+++|+|+|.+|++|+.||.|++||+.++ +++.++.+|...|++++|+|++++||+|+.||+|+||+.
T Consensus       335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999999999999999999876 788999999999999999999999999999999999953

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.2e-34  Score=305.16  Aligned_cols=266  Identities=17%  Similarity=0.227  Sum_probs=231.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++|+.||+|+||++.++++...+.. ...|.+++|+|++ ..|++++.|+.|++||+.++..               
T Consensus        36 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~---------------   99 (312)
T 4ery_A           36 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSGKC---------------   99 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE---------------
T ss_pred             CEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCCCcE---------------
Confidence            4899999999999999999999988876 7899999999999 4788888999999999876421               


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                         ...+.+|...|.+++|+|++++|++++.|+   .|++||+.++... ..+ .|...|.+++
T Consensus       100 -------------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~-~~~~~~~~~v~~~~  156 (312)
T 4ery_A          100 -------------------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE---SVRIWDVKTGKCL-KTLPAHSDPVSAVH  156 (312)
T ss_dssp             -------------------EEEEECCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCCEE-EEECCCSSCEEEEE
T ss_pred             -------------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCEEE-EEecCCCCcEEEEE
Confidence                               113557899999999999999999999998   9999999998887 777 8889999999


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK  624 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~  624 (707)
                      |+|++.+|++++ |+.|++||+.+++.+..+. .+...+.+++|+|+|.+|++|+.||.|++||+.++ +++..+.+|..
T Consensus       157 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~  235 (312)
T 4ery_A          157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKN  235 (312)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCC
T ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCC
Confidence            999999999998 9999999999998887765 34567999999999999999999999999999877 77888888876


Q ss_pred             CEEE--EEE-cCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe--CC
Q 005235          625 DITN--VAF-HRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG--AD  699 (707)
Q Consensus       625 ~I~~--vaf-spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g--~D  699 (707)
                      .+.+  ..| .+++.+|++|+.||.|+||++      .+..   .+..+.+|...    |.+++|+|++++|++++  .|
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~------~~~~---~~~~~~~h~~~----v~~~~~~p~~~~l~s~~~~~d  302 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL------QTKE---IVQKLQGHTDV----VISTACHPTENIIASAALEND  302 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECCTTSCEEEEET------TTCC---EEEEECCCSSC----EEEEEECSSSSEEEEEECTTT
T ss_pred             ceEEEEEEEEeCCCcEEEEECCCCEEEEEEC------CCch---hhhhhhccCCc----EEEEeecCcCCceEEEEccCC
Confidence            4332  234 467889999999999999954      4443   37889999988    99999999999999997  69


Q ss_pred             CcEEEEeC
Q 005235          700 SVIRLYCH  707 (707)
Q Consensus       700 g~IrlWdl  707 (707)
                      ++|++|+.
T Consensus       303 ~~i~~W~~  310 (312)
T 4ery_A          303 KTIKLWKS  310 (312)
T ss_dssp             CCEEEEEC
T ss_pred             ccEEEecC
Confidence            99999974

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-35  Score=322.15  Aligned_cols=317  Identities=14%  Similarity=0.154  Sum_probs=244.0

Q ss_pred             cccccccccce-----eeeeEEEcCccccceeecCCCCCCCCCCC-CCCCcccCC----------------------CCc
Q 005235          338 AYENAVKDSFE-----RCMDLYLCPRVRKKRVNIDPETLKPKLPS-RKDLKPYPV----------------------ACY  389 (707)
Q Consensus       338 ~~~~~i~e~f~-----rcldL~l~pr~~k~~lnidp~~llp~lp~-~~~l~pfp~----------------------~~~  389 (707)
                      .|+..+.+.+.     |||+++++|+..+.++++.+....|..|. +...+++|.                      ...
T Consensus        25 ~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~  104 (401)
T 4aez_A           25 DYSESVAEACGFDLNTRVLAFKLDAPEAKKPVDLRTQHNRPQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNL  104 (401)
T ss_dssp             -------------CCEEEEEECSCCCCCCCCCC-----------------CCCCCSCSEEEECTTCCCCTTCBCEEECTT
T ss_pred             HHHHHHHHHcCCCccCcEEeeCCCCCCCcCcccchhhcccccCCccccccCcCCCCcceeeeCCCCcCCceEEEEeecCC
Confidence            45556666555     99999999998887777766655554443 222222221                      134


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .+++++.||+|+||++.++++...+..  ...|.+++|+|++ ..|++++.++.|++|++.++..               
T Consensus       105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~---------------  168 (401)
T 4aez_A          105 NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTK---------------  168 (401)
T ss_dssp             SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE---------------
T ss_pred             CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeE---------------
Confidence            577889999999999999999888876  7899999999999 4788888899999999866421               


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                         ...+.+|...|.+++|  ++.+|++++.|+   .|++||+.........+ .|.+.|.+++
T Consensus       169 -------------------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~  224 (401)
T 4aez_A          169 -------------------LRTMAGHQARVGCLSW--NRHVLSSGSRSG---AIHHHDVRIANHQIGTLQGHSSEVCGLA  224 (401)
T ss_dssp             -------------------EEEECCCSSCEEEEEE--ETTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             -------------------EEEecCCCCceEEEEE--CCCEEEEEcCCC---CEEEEecccCcceeeEEcCCCCCeeEEE
Confidence                               1134589999999999  567999999998   99999999544432667 8999999999


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEE--CCCcEEEEECCCCCcceEEeecC
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG-DNLIVGS--REGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs--~Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                      |+|++.+|++++ |+.|++||+.+++++..+..|...|.+++|+|++ .++++|+  .|+.|++||+.++ .++..+. |
T Consensus       225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~-~  302 (401)
T 4aez_A          225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVD-A  302 (401)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEE-C
T ss_pred             EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEe-C
Confidence            999999999998 8999999999999999999999999999999977 4556654  7999999999977 6777776 6


Q ss_pred             CCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          623 PKDITNVAFHRSYPLFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                      ...|.+++|+|++++|++++  .||.|+||++.      ... ...+..+.+|...    |.+++|+|++++|++++.||
T Consensus       303 ~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~------~~~-~~~~~~~~~h~~~----v~~~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          303 GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS------SSG-LTKQVDIPAHDTR----VLYSALSPDGRILSTAASDE  371 (401)
T ss_dssp             SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE------TTE-EEEEEEEECCSSC----CCEEEECTTSSEEEEECTTS
T ss_pred             CCcEEEEEECCCCCeEEEEeecCCCcEEEEecC------Ccc-ceeEEEecCCCCC----EEEEEECCCCCEEEEEeCCC
Confidence            67899999999999999854  89999999654      221 2345567899887    99999999999999999999


Q ss_pred             cEEEEeC
Q 005235          701 VIRLYCH  707 (707)
Q Consensus       701 ~IrlWdl  707 (707)
                      +|++|++
T Consensus       372 ~i~iw~~  378 (401)
T 4aez_A          372 NLKFWRV  378 (401)
T ss_dssp             EEEEEEC
T ss_pred             cEEEEEC
Confidence            9999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-34  Score=310.03  Aligned_cols=275  Identities=17%  Similarity=0.194  Sum_probs=219.1

Q ss_pred             CCcEEEEEeCCCcEEEEeCCC-------CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccc
Q 005235          387 ACYLEYKGSTDGTVRIWEVES-------GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRV  458 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~t-------g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~  458 (707)
                      ++.+|++|+.|++|+|||+.+       +.+...+.+ ...|.+++|+|++ ..+++++.|++|++||+.++..      
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~~------  110 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGTT------  110 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTSSCE------
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCcE------
Confidence            557999999999999999874       345666665 7899999999999 4688888999999999876521      


Q ss_pred             cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--  536 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--  536 (707)
                                                  ...+.+|...|.+++|+|+|.+|++++.|+   .|++||+...... ...  
T Consensus       111 ----------------------------~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~---~i~~wd~~~~~~~-~~~~~  158 (343)
T 2xzm_R          111 ----------------------------YKRFVGHQSEVYSVAFSPDNRQILSAGAER---EIKLWNILGECKF-SSAEK  158 (343)
T ss_dssp             ----------------------------EEEEECCCSCEEEEEECSSTTEEEEEETTS---CEEEEESSSCEEE-ECCTT
T ss_pred             ----------------------------EEEEcCCCCcEEEEEECCCCCEEEEEcCCC---EEEEEeccCCcee-eeecc
Confidence                                        123568999999999999999999999998   9999999854332 222  


Q ss_pred             -ccCCCeEEEEEeCCC----------CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 005235          537 -KLHGLPVSSVFHPTR----------SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKL  604 (707)
Q Consensus       537 -~~~~~V~~v~fspd~----------~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I  604 (707)
                       .|...|.+++|+|++          .+|++++ |+.|++||. ..+....+.+|...|.+++|+|+|.+|++|+.||.|
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v  237 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL  237 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeE
Confidence             577889999999987          6888888 999999994 567788899999999999999999999999999999


Q ss_pred             EEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCC--CC--CcccceEEeeCCCCCCCCC
Q 005235          605 CWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLN--QN--PLIVPLEILRGHTSSNGRG  680 (707)
Q Consensus       605 ~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~--~~--~~~~pl~~l~gh~~~~~~g  680 (707)
                      ++||+.....+...+. +...|.+++|+|++.+++++ .|+.|+||++.......  ..  ..........+|...    
T Consensus       238 ~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  311 (343)
T 2xzm_R          238 LIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ----  311 (343)
T ss_dssp             EEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC----
T ss_pred             EEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc----
Confidence            9999965545555553 45679999999999988755 57789999764321110  00  000000112367666    


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          681 VMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       681 V~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |.+++|+|++++|++|+.||+|++|++
T Consensus       312 v~~~~~sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          312 CTSLAWNALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             EEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred             eEEEEECCCCCeEEEecCCceEEEEEE
Confidence            999999999999999999999999984

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-35  Score=317.32  Aligned_cols=306  Identities=12%  Similarity=0.063  Sum_probs=252.7

Q ss_pred             EEEEEeCCCcEEEEeC----CCCe------EEEEEec-----------CCcEEEEEEccCCCccEEEEEeCCeEEEEECC
Q 005235          390 LEYKGSTDGTVRIWEV----ESGR------CLRVLEI-----------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTG  448 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~----~tg~------~l~~l~~-----------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~  448 (707)
                      ++++|+.||+|+||++    .+++      ....+..           .+.|.+++|+|++ ..|++++.++.|++|+..
T Consensus        60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~~  138 (425)
T 1r5m_A           60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG-NSIVTGVENGELRLWNKT  138 (425)
T ss_dssp             EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred             EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Confidence            8999999999999999    8888      4555554           4489999999999 478888899999999943


Q ss_pred             CCCc-hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceE-EeccCCC---------------eEEEEEcCCC
Q 005235          449 LGNE-EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGI-RLRHFKM---------------VSSVEWHRRG  506 (707)
Q Consensus       449 ~~~~-~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~---------------V~~v~~sp~g  506 (707)
                      .... .+..+...+.++.|.     +++++.++.+.+|++....... +..+...               +.+++|++++
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (425)
T 1r5m_A          139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD  218 (425)
T ss_dssp             SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT
T ss_pred             CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC
Confidence            3221 344567778888775     7888899999999998665443 4445544               9999999875


Q ss_pred             CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeE
Q 005235          507 DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVS  584 (707)
Q Consensus       507 ~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~  584 (707)
                       .+++++.++   .|.+|++.++... ..+ .+...|.+++|+|++.+|++++ |+.|++||+.+++.+..+..|...|.
T Consensus       219 -~~~~~~~~g---~i~~~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~  293 (425)
T 1r5m_A          219 -KFVIPGPKG---AIFVYQITEKTPT-GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV  293 (425)
T ss_dssp             -EEEEECGGG---CEEEEETTCSSCS-EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE
T ss_pred             -EEEEEcCCC---eEEEEEcCCCcee-eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE
Confidence             588888877   9999999998776 677 8899999999999999999998 89999999999998999998999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCC-----
Q 005235          585 SIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLN-----  659 (707)
Q Consensus       585 sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~-----  659 (707)
                      +++|+|++ +|++++.|+.|++||+.++ .++..+..|...|.+++|+|++.+|++++.||.|+||++.......     
T Consensus       294 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  371 (425)
T 1r5m_A          294 SASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG  371 (425)
T ss_dssp             EEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------
T ss_pred             EEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeec
Confidence            99999999 9999999999999999877 7888899999999999999999999999999999999876432100     


Q ss_pred             ------CCCcccceEEeeCCCC--CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          660 ------QNPLIVPLEILRGHTS--SNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       660 ------~~~~~~pl~~l~gh~~--~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                            ......++..+.+|..  .    |.+++|+|++++|++++.||.|++|++
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          372 NRDGILNPLPIPLYASYQSSQDNDY----IFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             -------CEECCEEEEECCTTCCCC----EEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             ccccccCcccchhhhhhcCcccCCc----eEEEEccCCCceEEEEecCceEEEEee
Confidence                  0001125788888865  6    999999999999999999999999986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-35  Score=355.58  Aligned_cols=303  Identities=8%  Similarity=0.052  Sum_probs=234.3

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc-------------hhc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE-------------EEQ  455 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~-------------~~~  455 (707)
                      .+|++|+.|++|+|||+.+++++..+.+.+.|++++|+|+++ .+++++.|+.|++||+.++..             ...
T Consensus        70 ~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~  148 (902)
T 2oaj_A           70 IYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA  148 (902)
T ss_dssp             TEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred             CEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence            389999999999999999999999998888999999999994 788889999999999987653             123


Q ss_pred             ccccceeeeccc------ccccCCCCcEEEEecCCccceE-Eecc------------------CCCeEEEEEcCCCCEEE
Q 005235          456 RRVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGI-RLRH------------------FKMVSSVEWHRRGDYLS  510 (707)
Q Consensus       456 ~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~-~~~h------------------~~~V~~v~~sp~g~~la  510 (707)
                      +|...+.+++|.      +++++.++.+ +|++....... +..|                  ...|.+++|+|+|.+||
T Consensus       149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~la  227 (902)
T 2oaj_A          149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHII  227 (902)
T ss_dssp             SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEE
T ss_pred             cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEE
Confidence            456677777765      7788999999 99998765433 3333                  57899999999999999


Q ss_pred             EEeCCCCccEEEEEECCCCceeee-ee----c-------------cCCCeEEE---------------------------
Q 005235          511 TVMPAGESRAIFMHQLSKKLSHRI-PF----K-------------LHGLPVSS---------------------------  545 (707)
Q Consensus       511 t~s~dg~~~~V~Iwdl~~~~~~~~-~~----~-------------~~~~V~~v---------------------------  545 (707)
                      +++.|+   .|++||+.+++.... .+    .             +...|.++                           
T Consensus       228 sgs~Dg---~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~  304 (902)
T 2oaj_A          228 TIHEDN---SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS  304 (902)
T ss_dssp             EEETTC---CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred             EEECCC---eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence            999998   999999865432100 00    0             00011111                           


Q ss_pred             --------------------------------------------------------------------------------
Q 005235          546 --------------------------------------------------------------------------------  545 (707)
Q Consensus       546 --------------------------------------------------------------------------------  545 (707)
                                                                                                      
T Consensus       305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g  384 (902)
T 2oaj_A          305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG  384 (902)
T ss_dssp             EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------EEeCCCCEEEEEe-CCeEEEEEC
Q 005235          546 ---------------------------------------------------------VFHPTRSIFFVST-KKNIRVYDL  567 (707)
Q Consensus       546 ---------------------------------------------------------~fspd~~~l~v~s-dg~I~iwDl  567 (707)
                                                                               +|+|++++|++|+ |++|++||+
T Consensus       385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~  464 (902)
T 2oaj_A          385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA  464 (902)
T ss_dssp             CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred             CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence                                                                     2235556677777 788888887


Q ss_pred             CCCeEE----EEE--e-----CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-----------------------
Q 005235          568 LKQRLI----KKL--E-----TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-----------------------  613 (707)
Q Consensus       568 ~~~~~~----~~l--~-----~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-----------------------  613 (707)
                      .++.+.    ..+  .     +|...|.+|+|+|+|++||+|+.||+|+|||+.++.                       
T Consensus       465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (902)
T 2oaj_A          465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN  544 (902)
T ss_dssp             SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred             CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence            765311    111  1     677889999999999999999999999999997651                       


Q ss_pred             ---------------------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCccc--ceEEe
Q 005235          614 ---------------------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV--PLEIL  670 (707)
Q Consensus       614 ---------------------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~--pl~~l  670 (707)
                                           .++.++.+|.+.|++|+|||+| +||+|+.|++|+|||+.      +...+.  .+..+
T Consensus       545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~------~~~~~~~~~~~~~  617 (902)
T 2oaj_A          545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR------GPAIIYMENIREI  617 (902)
T ss_dssp             GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETT------TTEEEEEEEGGGT
T ss_pred             CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECC------CCeEEEEeehhHh
Confidence                                 2467888999999999999999 99999999999999643      322210  11234


Q ss_pred             e-CCCCCCCCCeeEEEEc-----CCC---CEEEEEeCCCcEEEEeC
Q 005235          671 R-GHTSSNGRGVMDCKFH-----PRQ---PWLFTAGADSVIRLYCH  707 (707)
Q Consensus       671 ~-gh~~~~~~gV~~l~fs-----pdg---~~L~s~g~Dg~IrlWdl  707 (707)
                      . +|...    |++++|+     |||   ++|++|+.||+|++|++
T Consensus       618 ~~gh~~~----V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          618 SGAQSAC----VTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             CSSCCCC----EEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             ccccccc----eEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            3 88887    9999999     886   79999999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6e-34  Score=300.31  Aligned_cols=264  Identities=14%  Similarity=0.191  Sum_probs=224.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeE---EEEEe---cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRC---LRVLE---IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~---l~~l~---~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      .++++|+ ||.|+||++.++..   +..+.   +...|.+++|+|++ ..+++++.++.|++|++.++...         
T Consensus        64 ~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~---------  132 (337)
T 1gxr_A           64 RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPR---------  132 (337)
T ss_dssp             SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--E---------
T ss_pred             cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcc---------
Confidence            4888888 99999999987653   33333   37899999999999 47888888999999998764211         


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL  541 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~  541 (707)
                                             .......|...|.+++|+|++++|++++.++   .|++||+.++... ..+ .|.+.
T Consensus       133 -----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~~~d~~~~~~~-~~~~~~~~~  185 (337)
T 1gxr_A          133 -----------------------IKAELTSSAPACYALAISPDSKVCFSCCSDG---NIAVWDLHNQTLV-RQFQGHTDG  185 (337)
T ss_dssp             -----------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE-EEECCCSSC
T ss_pred             -----------------------eeeecccCCCceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCcee-eeeecccCc
Confidence                                   0113557889999999999999999999988   9999999998877 777 78999


Q ss_pred             eEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235          542 PVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       542 V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~  620 (707)
                      |.+++|+|++.+|++++ |+.|++||+.+++.+..+. +...+.+++|+|+|.+|++|+.++.|++||+... . ...+.
T Consensus       186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-~-~~~~~  262 (337)
T 1gxr_A          186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-D-KYQLH  262 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-C-EEEEC
T ss_pred             eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-C-eEEEc
Confidence            99999999999999998 8999999999999888775 5678999999999999999999999999999876 3 45678


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                      .|...|.+++|+|++++|++++.||.|++|+.      .+...   + ....|...    |.+++|+|++.+|++++.||
T Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~------~~~~~---~-~~~~~~~~----v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT------PYGAS---I-FQSKESSS----VLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEET------TTCCE---E-EEEECSSC----EEEEEECTTSCEEEEEETTS
T ss_pred             CCccceeEEEECCCCCEEEEecCCCcEEEEEC------CCCeE---E-EEecCCCc----EEEEEECCCCCEEEEecCCC
Confidence            89999999999999999999999999999954      33332   2 23346665    99999999999999999999


Q ss_pred             cEEEEeC
Q 005235          701 VIRLYCH  707 (707)
Q Consensus       701 ~IrlWdl  707 (707)
                      .|++|++
T Consensus       329 ~i~iw~~  335 (337)
T 1gxr_A          329 KATVYEV  335 (337)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=309.02  Aligned_cols=224  Identities=17%  Similarity=0.231  Sum_probs=205.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++|+.|++|+|||+.+++++..+.. ...+.+++|+|++ ..|++++.++.|++|++.++...              
T Consensus        93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~--------------  157 (321)
T 3ow8_A           93 PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE--------------  157 (321)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE--------------
T ss_pred             CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee--------------
Confidence            4899999999999999999999998887 6789999999999 47888888999999998765321              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                          ..+..|...|.+++|+|+|++|++++.|+   .|++||+.++... ..+ .|...|.+++
T Consensus       158 --------------------~~~~~~~~~v~~~~~spdg~~lasg~~dg---~i~iwd~~~~~~~-~~~~~h~~~v~~l~  213 (321)
T 3ow8_A          158 --------------------YSLDTRGKFILSIAYSPDGKYLASGAIDG---IINIFDIATGKLL-HTLEGHAMPIRSLT  213 (321)
T ss_dssp             --------------------EEEECSSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE-EEECCCSSCCCEEE
T ss_pred             --------------------EEecCCCceEEEEEECCCCCEEEEEcCCC---eEEEEECCCCcEE-EEEcccCCceeEEE
Confidence                                12446788899999999999999999998   9999999999887 778 8899999999


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      |+|++.+|++++ |++|++||+.+++++.++.+|...|.+++|+|+|.+|++|+.|+.|++||+.++ .++.++.+|...
T Consensus       214 ~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~h~~~  292 (321)
T 3ow8_A          214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFFDHQDQ  292 (321)
T ss_dssp             ECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSC
T ss_pred             EcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEcCCCCc
Confidence            999999999998 899999999999999999999999999999999999999999999999999977 788999999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          626 ITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      |++++|+|++.+|++++.||+|+|||.
T Consensus       293 v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          293 VWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            999999999999999999999999964

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-34  Score=331.19  Aligned_cols=388  Identities=12%  Similarity=0.108  Sum_probs=280.1

Q ss_pred             CCCCCCCcc------ccCC--CCCccCChh---hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEc
Q 005235          288 KPKLPGHEE------SYNP--SLEYIPTQE---ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLC  356 (707)
Q Consensus       288 k~~lpgh~~------synP--~ge~L~s~~---~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~  356 (707)
                      ...+.+|..      +|+|  ++++|++.+   .++.|+........   +.....+..+..+.       ..+..+.|+
T Consensus        56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~~~~~~~-------~~v~~~~~s  125 (615)
T 1pgu_A           56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---SVEVNVKSEFQVLA-------GPISDISWD  125 (615)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---EEEEEEEEEEECCS-------SCEEEEEEC
T ss_pred             ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc---cccccccchhhccc-------ccEEEEEEe
Confidence            345666754      4999  999999844   45556532110000   00112233333332       334677788


Q ss_pred             Cccccc-----------eeec-CCCCCCCCCCCCC----CCcccCCCC-cEEEEEeCCCcEEEEeCCCCeEEEEEec-CC
Q 005235          357 PRVRKK-----------RVNI-DPETLKPKLPSRK----DLKPYPVAC-YLEYKGSTDGTVRIWEVESGRCLRVLEI-GE  418 (707)
Q Consensus       357 pr~~k~-----------~lni-dp~~llp~lp~~~----~l~pfp~~~-~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~  418 (707)
                      |+.+..           .+.+ +....+..+..+.    .+. |..++ .++++|+.||+|++||+.+++++..+.. ..
T Consensus       126 ~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~  204 (615)
T 1pgu_A          126 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH-LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK  204 (615)
T ss_dssp             TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEE-ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC
T ss_pred             CCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEE-ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC
Confidence            876532           2221 3223232232221    122 44444 4899999999999999999999999886 55


Q ss_pred             ---cEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCc--hh-c---ccccceeeeccc----ccccCCCCcEEEEecCC
Q 005235          419 ---AIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNE--EE-Q---RRVKDLLHVETP----TAPDDNMASIVSWLQHD  484 (707)
Q Consensus       419 ---~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~--~~-~---~~~~~v~~~~~~----~~~~~~d~~i~iW~~~~  484 (707)
                         .|.+++|+|+ + ..+++++.++.|++|++.++..  .+ .   .+...+..+.|.    +++++.++.+++|+...
T Consensus       205 ~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          205 QGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             TTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             CCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCC
Confidence               8999999999 7 4788888999999999988764  22 3   566777777763    78888999999999986


Q ss_pred             ccceE-Eecc----CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC--------
Q 005235          485 KLDGI-RLRH----FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT--------  550 (707)
Q Consensus       485 ~~~~~-~~~h----~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd--------  550 (707)
                      ..... +..+    ...+.++.|+ ++.++++++.++   .|++|++.++... ..+ .|.+.|.+++| |+        
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g---~i~~~d~~~~~~~-~~~~~~~~~v~~~~~-~~l~~~~~dg  357 (615)
T 1pgu_A          284 SKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG---TLNFYELGHDEVL-KTISGHNKGITALTV-NPLISGSYDG  357 (615)
T ss_dssp             TEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS---CEEEEETTEEEEE-EEECCCSSCEEEEET-TTTEEEETTS
T ss_pred             CcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC---CEEEEECCCCcEE-EEEeCCCCCEEEEEe-cCcEEECCCC
Confidence            65543 3333    4678888886 899999999988   9999998875544 444 44444433333 21        


Q ss_pred             --------------------------------------------------------------------------------
Q 005235          551 --------------------------------------------------------------------------------  550 (707)
Q Consensus       551 --------------------------------------------------------------------------------  550 (707)
                                                                                                      
T Consensus       358 ~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  437 (615)
T 1pgu_A          358 RIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG  437 (615)
T ss_dssp             CEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTC
T ss_pred             eEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCC
Confidence                                                                                            


Q ss_pred             ------------------CCEEEEEe--CCeEEEEECCCCeEE-EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235          551 ------------------RSIFFVST--KKNIRVYDLLKQRLI-KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM  609 (707)
Q Consensus       551 ------------------~~~l~v~s--dg~I~iwDl~~~~~~-~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl  609 (707)
                                        +.+|++++  ++.|++||+.+++.. ..+..|...|++++|+|+|.+|++|+.||.|++||+
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  517 (615)
T 1pgu_A          438 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL  517 (615)
T ss_dssp             CEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeC
Confidence                              33344443  566666666655444 455678889999999999999999999999999999


Q ss_pred             CCCCcceEEeec-CCCCEEEEEEcC----------CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCC
Q 005235          610 DLSSKPYRVLKC-HPKDITNVAFHR----------SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG  678 (707)
Q Consensus       610 ~~~~~~~~~l~~-h~~~I~~vafsp----------dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~  678 (707)
                      .++ .++..+.+ |...|++++|+|          ++++||+|+.||+|+||++.      +..  .++..+.+|...  
T Consensus       518 ~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~~--~~~~~~~~h~~~--  586 (615)
T 1pgu_A          518 QSR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK------RPM--KIIKALNAHKDG--  586 (615)
T ss_dssp             TTT-EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS------CTT--CCEEETTSSTTC--
T ss_pred             CCC-cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC------CCc--eechhhhcCccc--
Confidence            877 77778887 999999999999          99999999999999999653      331  247789999887  


Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          679 RGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       679 ~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                        |.+++|+|+++ |++++.||+|++|++
T Consensus       587 --v~~l~~s~~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          587 --VNNLLWETPST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             --EEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             --eEEEEEcCCCC-eEEecCCceEEEEee
Confidence              99999999999 999999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.8e-34  Score=301.63  Aligned_cols=245  Identities=15%  Similarity=0.216  Sum_probs=213.8

Q ss_pred             EEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceE
Q 005235          411 LRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGI  489 (707)
Q Consensus       411 l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~  489 (707)
                      .+++.. .+.|.+|+|+|++ ..|++++.|+.|++||+.++..                                  ...
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~----------------------------------~~~   50 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVE----------------------------------VRS   50 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE----------------------------------EEE
T ss_pred             EEeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCce----------------------------------eEE
Confidence            345555 7899999999999 4788899999999999876421                                  123


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL  567 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl  567 (707)
                      +..|...|.+++|++++++|++++.|+   .|++||+.++... ..+ .|.+.|.+++|+|++++|++|+ |++|++||+
T Consensus        51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~---~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           51 IQVTETPVRAGKFIARKNWIIVGSDDF---RIRVFNYNTGEKV-VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTS---EEEEEETTTCCEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred             eeccCCcEEEEEEeCCCCEEEEECCCC---EEEEEECCCCcEE-EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence            457889999999999999999999998   9999999999887 778 8999999999999999999998 999999999


Q ss_pred             CCC-eEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC--CCCEEEEEeC
Q 005235          568 LKQ-RLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR--SYPLFASCSD  643 (707)
Q Consensus       568 ~~~-~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp--dg~llaSgs~  643 (707)
                      .++ .+...+.+|...|.+++|+| ++.+|++|+.|+.|++||+...........+|...|..++|+|  ++++|++|+.
T Consensus       127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~  206 (304)
T 2ynn_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (304)
T ss_dssp             GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred             CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence            887 66678889999999999999 6789999999999999999877444444556778899999987  7789999999


Q ss_pred             CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          644 DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ||+|+|||+      .+..   ++..+.+|...    |.+++|+|++++|+||+.||+|+|||+
T Consensus       207 D~~i~iWd~------~~~~---~~~~~~~h~~~----v~~~~~~p~~~~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          207 DLTIKIWDY------QTKS---CVATLEGHMSN----VSFAVFHPTLPIIISGSEDGTLKIWNS  257 (304)
T ss_dssp             TSEEEEEET------TTTE---EEEEEECCSSC----EEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             CCeEEEEeC------CCCc---cceeeCCCCCC----EEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            999999954      3333   47889999987    999999999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.8e-34  Score=307.56  Aligned_cols=277  Identities=13%  Similarity=0.148  Sum_probs=231.4

Q ss_pred             CCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccc
Q 005235          288 KPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVR  360 (707)
Q Consensus       288 k~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~  360 (707)
                      ...|.||..     .|+|++.+|++.+.          |..+  |.......+..++.+...+       ..+.++|++ 
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~----------Dg~v~iWd~~~~~~~~~~~~~~~~v-------~~~~~s~~~-  109 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQ----------DGKLIIWDSYTTNKVHAIPLRSSWV-------MTCAYAPSG-  109 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEET----------TTEEEEEETTTCCEEEEEECSSSCE-------EEEEECTTS-
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeC----------CCcEEEEECCCCCcceEeecCCccE-------EEEEECCCC-
Confidence            346788976     59999999999554          3333  3333444555555544433       566676554 


Q ss_pred             cceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEec-CCcEEEEEEccCCCccEEE
Q 005235          361 KKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG----RCLRVLEI-GEAIQYVAWNPLPELPVLA  435 (707)
Q Consensus       361 k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg----~~l~~l~~-~~~V~~v~~spdg~~~lla  435 (707)
                                                  .++++|+.|++|+||++.++    +....+.. .+.|.++.|++++  .+++
T Consensus       110 ----------------------------~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s  159 (340)
T 1got_B          110 ----------------------------NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVT  159 (340)
T ss_dssp             ----------------------------SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEE
T ss_pred             ----------------------------CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEE
Confidence                                        58999999999999999875    34555555 7899999999998  6999


Q ss_pred             EEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 005235          436 VSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA  515 (707)
Q Consensus       436 ~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d  515 (707)
                      ++.|+.|++||+.++..                                  ...+.+|.+.|.+++|+|++.+|++++.|
T Consensus       160 ~s~d~~i~~wd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~~l~sg~~d  205 (340)
T 1got_B          160 SSGDTTCALWDIETGQQ----------------------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             EETTSCEEEEETTTTEE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EECCCcEEEEECCCCcE----------------------------------EEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence            99999999999876521                                  11355799999999999999999999999


Q ss_pred             CCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC--CCCeEEEEEcCC
Q 005235          516 GESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG--LKEVSSIAIHPA  591 (707)
Q Consensus       516 g~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~--~~~I~sl~~spd  591 (707)
                      +   .|++||+.++... ..+ .|...|.+++|+|++.+|++++ |++|++||+++++.+..+..+  ...|++++|+|+
T Consensus       206 ~---~v~~wd~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          206 A---SAKLWDVREGMCR-QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             S---CEEEEETTTCSEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             C---cEEEEECCCCeeE-EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence            8   9999999999887 788 8999999999999999999998 999999999999888777532  246999999999


Q ss_pred             CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          592 GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       592 g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      |.+|++|+.||.|++||+.++ ..+..+.+|...|++++|+|++.+||||+.||+|+||+
T Consensus       282 g~~l~~g~~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          282 GRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEECCCCeEEEEEcccC-cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999877 67889999999999999999999999999999999994

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-36  Score=330.14  Aligned_cols=309  Identities=13%  Similarity=0.122  Sum_probs=253.2

Q ss_pred             cEEEEE----------eCCCcEEEEeCCCCe---EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCC---C-
Q 005235          389 YLEYKG----------STDGTVRIWEVESGR---CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG---N-  451 (707)
Q Consensus       389 ~~l~sg----------s~DgtVrIWd~~tg~---~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~---~-  451 (707)
                      .++++|          +.||+|+||++.++.   ++..+.+...|.+++|+|++ ..|++++.++.|++|++...   . 
T Consensus        26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~~~  104 (416)
T 2pm9_A           26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNAIN  104 (416)
T ss_dssp             CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTSCCC
T ss_pred             CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCC-CeEEEEccCCeEEEeeccccccccc
Confidence            489998          899999999999875   55556668899999999999 47888889999999999872   1 


Q ss_pred             --chhcccccceeeeccc------ccccCCCCcEEEEecCCcc------ceE----EeccCCCeEEEEEcCC-CCEEEEE
Q 005235          452 --EEEQRRVKDLLHVETP------TAPDDNMASIVSWLQHDKL------DGI----RLRHFKMVSSVEWHRR-GDYLSTV  512 (707)
Q Consensus       452 --~~~~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~------~~~----~~~h~~~V~~v~~sp~-g~~lat~  512 (707)
                        ..+..+...+.++.|.      +++++.++.|++|++....      ...    ...|...|.+++|+|+ +.+|+++
T Consensus       105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  184 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA  184 (416)
T ss_dssp             EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred             chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence              2445577777777764      7888999999999998665      222    3578999999999999 7899999


Q ss_pred             eCCCCccEEEEEECCCCceeeeee-cc------CCCeEEEEEeCCC-CEEEEEe-CC---eEEEEECCCC-eEEEEEe-C
Q 005235          513 MPAGESRAIFMHQLSKKLSHRIPF-KL------HGLPVSSVFHPTR-SIFFVST-KK---NIRVYDLLKQ-RLIKKLE-T  578 (707)
Q Consensus       513 s~dg~~~~V~Iwdl~~~~~~~~~~-~~------~~~V~~v~fspd~-~~l~v~s-dg---~I~iwDl~~~-~~~~~l~-~  578 (707)
                      +.|+   .|++||+.++... ..+ .+      ...|.+++|+|++ .+|++++ ++   .|++||++++ .++..+. +
T Consensus       185 ~~dg---~v~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~  260 (416)
T 2pm9_A          185 GSSN---FASIWDLKAKKEV-IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG  260 (416)
T ss_dssp             SSSS---CEEEEETTTTEEE-EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred             cCCC---CEEEEECCCCCcc-eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence            9988   9999999998876 666 43      7889999999997 5788877 67   9999999986 6777777 8


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeccccc
Q 005235          579 GLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSY-PLFASCSDDCTAYVFHGMVYS  656 (707)
Q Consensus       579 ~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg-~llaSgs~Dg~I~Vwd~~~~~  656 (707)
                      |...|.+++|+| ++.+|++|+.||.|++||+.++ +++..+.+|...|++++|+|++ .+|++++.||.|+||++....
T Consensus       261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            999999999999 9999999999999999999987 7889999999999999999999 799999999999999876432


Q ss_pred             CCCCCCc------ccc--------------------eEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          657 DLNQNPL------IVP--------------------LEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       657 Dl~~~~~------~~p--------------------l~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .......      ..+                    +.....|...    |.+++|+|+|++|++++.||+|+||++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~la~~~~d~~v~~w~~  412 (416)
T 2pm9_A          340 NTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP----SPAAHWAFGGKLVQITPDGKGVSITNP  412 (416)
T ss_dssp             CSSCC----------------------CCSCCCSSCCCCCSTTCCC----SCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred             CCcccccccccccCCcccccccccccccccccccccccCCccccCC----ccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence            2111000      000                    0011113433    889999999999999999999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.8e-35  Score=364.15  Aligned_cols=357  Identities=16%  Similarity=0.210  Sum_probs=283.1

Q ss_pred             CCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccc
Q 005235          288 KPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVR  360 (707)
Q Consensus       288 k~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~  360 (707)
                      .+.+++|..     +|+|+|.+|++.+.          |..+  |.......+..+.++...|       ..+.|+|++ 
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------d~~i~vw~~~~~~~~~~~~~h~~~v-------~~~~~s~~~-  669 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGA----------DKTLQVFKAETGEKLLDIKAHEDEV-------LCCAFSSDD-  669 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEET----------TSCEEEEETTTCCEEEEECCCSSCE-------EEEEECTTS-
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeC----------CCeEEEEECCCCCEEEEeccCCCCE-------EEEEEecCC-
Confidence            345678877     69999999999655          4444  4445555666665555444       677777654 


Q ss_pred             cceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCc-cEEEEEe
Q 005235          361 KKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPEL-PVLAVSV  438 (707)
Q Consensus       361 k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~-~lla~s~  438 (707)
                                                  .++++|+.||+|+|||+.+++++..+.. ...|.+++|+|+++. .+++++.
T Consensus       670 ----------------------------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~  721 (1249)
T 3sfz_A          670 ----------------------------SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN  721 (1249)
T ss_dssp             ----------------------------SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEET
T ss_pred             ----------------------------CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeC
Confidence                                        4899999999999999999999999987 889999999996432 4667778


Q ss_pred             CCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCccce-----------------------
Q 005235          439 GQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDG-----------------------  488 (707)
Q Consensus       439 d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~-----------------------  488 (707)
                      |+.|++||+.++..  .+.++...+.++.|+     +++++.++.+++|+.......                       
T Consensus       722 d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  801 (1249)
T 3sfz_A          722 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV  801 (1249)
T ss_dssp             TSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCB
T ss_pred             CCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceE
Confidence            99999999998864  445677888888776     788899999999997543210                       


Q ss_pred             ---------------------------------EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235          489 ---------------------------------IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP  535 (707)
Q Consensus       489 ---------------------------------~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~  535 (707)
                                                       ...+|...|.+++|+|++.++++++.++   .|.+|++.++... ..
T Consensus       802 ~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~v~vwd~~~~~~~-~~  877 (1249)
T 3sfz_A          802 KCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY---CVELWNIDSRLKV-AD  877 (1249)
T ss_dssp             CCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS---CEEEEETTTTEEE-EE
T ss_pred             EEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCcee-ee
Confidence                                             0126788999999999999999999988   9999999998877 67


Q ss_pred             e-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC---------------------------------------------
Q 005235          536 F-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL---------------------------------------------  568 (707)
Q Consensus       536 ~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~---------------------------------------------  568 (707)
                      + .|.+.|.+++|+|++.+|++++ |+.|++||+.                                             
T Consensus       878 ~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  957 (1249)
T 3sfz_A          878 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID  957 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE
T ss_pred             cCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEE
Confidence            7 8888899999999988888877 7888888743                                             


Q ss_pred             ----------------------------------CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-
Q 005235          569 ----------------------------------KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-  613 (707)
Q Consensus       569 ----------------------------------~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-  613 (707)
                                                        +++.+..+.+|...|++++|+|+|.+|++|+.||.|++||+.++. 
T Consensus       958 ~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A          958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp             EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred             EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence                                              233444556788889999999999999999999988888876431 


Q ss_pred             --------------------------------------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q 005235          614 --------------------------------------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVY  655 (707)
Q Consensus       614 --------------------------------------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~  655 (707)
                                                            ++...+.+|...|++++|+|++++|++++.||+|++|++   
T Consensus      1038 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~--- 1114 (1249)
T 3sfz_A         1038 VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF--- 1114 (1249)
T ss_dssp             ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECS---
T ss_pred             EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEEC---
Confidence                                                  234456667778888888888888888888888888843   


Q ss_pred             cCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          656 SDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       656 ~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                         .+..   ++..+.+|...    |++++|+|++.+|++++.||+|++|++
T Consensus      1115 ---~~~~---~~~~l~~h~~~----v~~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A         1115 ---DLLS---PLHELKGHNGC----VRCSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp             ---SSSS---CSBCCCCCSSC----EEEEEECSSSSEEEEEETTSCCCEEES
T ss_pred             ---CCcc---eeeeeccCCCc----EEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence               3333   36678899887    999999999999999999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=311.98  Aligned_cols=222  Identities=14%  Similarity=0.119  Sum_probs=189.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLE-----IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~-----~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      .+++|+.||+|+|||+.+++++..+.     +.+.|++|+|+|++ ..|++++.|++|++||+.++..            
T Consensus        95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~------------  161 (344)
T 4gqb_B           95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVV------------  161 (344)
T ss_dssp             EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE------------
T ss_pred             eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE------------
Confidence            68899999999999999987655443     37899999999999 4788889999999999876521            


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeee---ccCC
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHG  540 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~  540 (707)
                                            ...+.+|...|.+++|++++. +|++++.|+   .|+|||+.+++.. ..+   .+..
T Consensus       162 ----------------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~---~v~iwd~~~~~~~-~~~~~~~~~~  215 (344)
T 4gqb_B          162 ----------------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDN---RILLWDTRCPKPA-SQIGCSAPGY  215 (344)
T ss_dssp             ----------------------EEEECCCSSCEEEEEECSSCTTEEEEEETTS---CEEEEETTSSSCE-EECC----CC
T ss_pred             ----------------------EEEEcCcCCceEEEEecCCCCCceeeecccc---cccccccccccee-eeeecceeec
Confidence                                  123568999999999999885 789999988   9999999998876 555   4556


Q ss_pred             CeEEEEEeCC-CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceE
Q 005235          541 LPVSSVFHPT-RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYR  617 (707)
Q Consensus       541 ~V~~v~fspd-~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~  617 (707)
                      .+.+++|+|+ +.+|++|+ |++|+|||+++++++.++.+|...|++++|+|+| .+|++|+.|++|+|||+.++ + +.
T Consensus       216 ~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-~-~~  293 (344)
T 4gqb_B          216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-E-LF  293 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-E-EE
T ss_pred             cceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-c-EE
Confidence            7899999995 56777887 8999999999999999999999999999999998 57999999999999999876 4 44


Q ss_pred             EeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEec
Q 005235          618 VLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHG  652 (707)
Q Consensus       618 ~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~  652 (707)
                      .+.+|...|++|+|||++. +|+|||.||+|++|++
T Consensus       294 ~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          294 RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence            6789999999999999986 7889999999999955

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=298.37  Aligned_cols=265  Identities=14%  Similarity=0.201  Sum_probs=230.4

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++|+.||.|+|||+.+++++..+.. .+.|.+++|+|++ ..|++++.|+.|++|++.++...              
T Consensus        45 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~--------------  109 (369)
T 3zwl_B           45 DLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQCV--------------  109 (369)
T ss_dssp             CEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCEE--------------
T ss_pred             CEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE--------------
Confidence            4899999999999999999999999986 8899999999998 47888889999999998765221              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC-----CCccEEEEEECCCCcee----------
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA-----GESRAIFMHQLSKKLSH----------  532 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d-----g~~~~V~Iwdl~~~~~~----------  532 (707)
                                           ....+...|.+++|+|++.+|++++.+     +   .|.+|++......          
T Consensus       110 ---------------------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g---~i~~~d~~~~~~~~~~~~~~~~~  165 (369)
T 3zwl_B          110 ---------------------ATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG---SINIYEIERDSATHELTKVSEEP  165 (369)
T ss_dssp             ---------------------EEEECSSCEEEEEECTTSSEEEEEECCBTTBCC---EEEEEEEEECTTTCCEEEECSSC
T ss_pred             ---------------------EEeecCCCeEEEEEccCCCEEEEecCCccCCCC---EEEEEEecCCccceeecccccce
Confidence                                 122478899999999999999999987     6   9999999766431          


Q ss_pred             eeee-ccCC--CeEEEEEeCCCCEEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 005235          533 RIPF-KLHG--LPVSSVFHPTRSIFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWF  607 (707)
Q Consensus       533 ~~~~-~~~~--~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vw  607 (707)
                      ...+ .+.+  .+.+++|+|++.+|++++ ++.|++||+.+ ++.+..+..|...|.+++|+|++.+|++++.||.|++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~  245 (369)
T 3zwl_B          166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV  245 (369)
T ss_dssp             SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEE
Confidence            0222 3444  899999999999999998 89999999998 78899999999999999999999999999999999999


Q ss_pred             ECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC--------------cEEEEecccccCCCCCCcccceEEeeCC
Q 005235          608 DMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC--------------TAYVFHGMVYSDLNQNPLIVPLEILRGH  673 (707)
Q Consensus       608 Dl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg--------------~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh  673 (707)
                      |+.++ .++..+. +...+.+++|+|+++++++++.++              .|++|+.      .+..   ++..+.+|
T Consensus       246 d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~------~~~~---~~~~~~~~  314 (369)
T 3zwl_B          246 DVSTL-QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK------IFEE---EIGRVQGH  314 (369)
T ss_dssp             ETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET------TTCC---EEEEEECC
T ss_pred             ECCCC-ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec------CCCc---chhheecc
Confidence            99987 6677776 778899999999999999999988              7999953      3333   47788999


Q ss_pred             CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          674 TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       674 ~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ...    |.+++|+|++++|++++.||.|++|++
T Consensus       315 ~~~----v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          315 FGP----LNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             SSC----EEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             cCc----EEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            887    999999999999999999999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-33  Score=297.08  Aligned_cols=274  Identities=14%  Similarity=0.122  Sum_probs=219.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCC-----eEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          389 YLEYKGSTDGTVRIWEVESG-----RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg-----~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      .+|+|||.||+|+|||+.++     .+...+.+ ...|.+++|+|++ ..|++++.|+.|++|+......          
T Consensus        52 ~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~~----------  120 (340)
T 4aow_A           52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGTT----------  120 (340)
T ss_dssp             TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----------
T ss_pred             CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccce----------
Confidence            58999999999999998764     35566665 7899999999999 4788899999999999765421          


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL  541 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~  541 (707)
                                              ......+...+..+.+++++.+|++++.|+   .+++|++.........+ .+...
T Consensus       121 ------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~~~~~d~~~~~~~~~~~~~~~~~  173 (340)
T 4aow_A          121 ------------------------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDK---TIKLWNTLGVCKYTVQDESHSEW  173 (340)
T ss_dssp             ------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTS---CEEEECTTSCEEEEECSSSCSSC
T ss_pred             ------------------------eeeecCCCCceeEEEEeecCccceeecCCC---eEEEEEeCCCceEEEEeccccCc
Confidence                                    112446778889999999999999999988   99999998776552334 78899


Q ss_pred             eEEEEEeCCC--CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE
Q 005235          542 PVSSVFHPTR--SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV  618 (707)
Q Consensus       542 V~~v~fspd~--~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~  618 (707)
                      +.+++|++++  .++++++ |+.|++||+.+++++..+.+|...|++++|+|+|.+|++|+.||.|++||+.+. .++..
T Consensus       174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~  252 (340)
T 4aow_A          174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-KHLYT  252 (340)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEE
T ss_pred             ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-ceeee
Confidence            9999999865  4566776 899999999999999999999999999999999999999999999999999977 67777


Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          619 LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       619 l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                      +..+ ..|.+++|+|++.++ +++.|+.|+||++....-+.............+|...    |++++|+|++++|+||+.
T Consensus       253 ~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~s~dg~~l~sgs~  326 (340)
T 4aow_A          253 LDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ----CTSLAWSADGQTLFAGYT  326 (340)
T ss_dssp             EECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCC----EEEEEECTTSSEEEEEET
T ss_pred             ecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC----EEEEEECCCCCEEEEEeC
Confidence            7754 679999999988765 4557999999965422111000111112334567766    999999999999999999


Q ss_pred             CCcEEEEeC
Q 005235          699 DSVIRLYCH  707 (707)
Q Consensus       699 Dg~IrlWdl  707 (707)
                      ||+|+||++
T Consensus       327 Dg~v~iW~~  335 (340)
T 4aow_A          327 DNLVRVWQV  335 (340)
T ss_dssp             TSCEEEEEE
T ss_pred             CCEEEEEeC
Confidence            999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1e-34  Score=317.64  Aligned_cols=314  Identities=13%  Similarity=0.121  Sum_probs=254.2

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccce
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDL  461 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v  461 (707)
                      |..++.++++|+.||+|++||+.+++....+.....+....|+|++. .|++++.++.|++|++.++..  .+..+...+
T Consensus        64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v  142 (420)
T 3vl1_A           64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREIDQAHVSEI  142 (420)
T ss_dssp             EEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEEETTSSSSCE
T ss_pred             eeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCC-EEEEEECCCCEEEEeCCCcceeeecccccCcc
Confidence            55566789999999999999999877655555565566668899994 788888999999999987754  334688888


Q ss_pred             eeeccc-----ccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235          462 LHVETP-----TAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP  535 (707)
Q Consensus       462 ~~~~~~-----~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~  535 (707)
                      .++.|.     +++++.++.|++|++..... ..+.+|...|.+++|+|++.+|++++.|+   .|++||+.++... ..
T Consensus       143 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~-~~  218 (420)
T 3vl1_A          143 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG---TIRLWECGTGTTI-HT  218 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS---CEEEEETTTTEEE-EE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC---cEEEeECCCCcee-EE
Confidence            888886     88899999999999986554 44778999999999999999999999998   9999999988776 55


Q ss_pred             e-c---cCCCeE---------------------EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC-CCCCeEEEEE
Q 005235          536 F-K---LHGLPV---------------------SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET-GLKEVSSIAI  588 (707)
Q Consensus       536 ~-~---~~~~V~---------------------~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~-~~~~I~sl~~  588 (707)
                      + .   +...+.                     +++|+|++.+|++++ |+.|++||+.+++.+..+.. |...|.+++|
T Consensus       219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  298 (420)
T 3vl1_A          219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV  298 (420)
T ss_dssp             ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEE
T ss_pred             eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEE
Confidence            5 2   334444                     455578899999998 89999999999887777754 6788999999


Q ss_pred             cCCCC-EEEEEECCCcEEEEECCCCCcceEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccc
Q 005235          589 HPAGD-NLIVGSREGKLCWFDMDLSSKPYRVLKC-HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVP  666 (707)
Q Consensus       589 spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~p  666 (707)
                      +|++. +|++|+.||.|++||+.++..++..+.. |...|+++.| +++.+|++++.||+|+||++..............
T Consensus       299 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~  377 (420)
T 3vl1_A          299 DGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFET  377 (420)
T ss_dssp             CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTS
T ss_pred             eCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccC
Confidence            99998 9999999999999999987676788877 6778888855 5788999999999999997653211111000112


Q ss_pred             eEEeeCCCCCCCCCeeEEEEcCCCC---EEEEEeCCCcEEEEeC
Q 005235          667 LEILRGHTSSNGRGVMDCKFHPRQP---WLFTAGADSVIRLYCH  707 (707)
Q Consensus       667 l~~l~gh~~~~~~gV~~l~fspdg~---~L~s~g~Dg~IrlWdl  707 (707)
                      ...+.+|...    |.+++|+|++.   .|+++|.+|.+.+|++
T Consensus       378 ~~~~~~~~~~----v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~  417 (420)
T 3vl1_A          378 PTFLVSNDDA----VSQFCYVSDDESNGEVLEVGKNNFCALYNL  417 (420)
T ss_dssp             CEEECCSSCC----CCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred             ccEEccCCcc----eEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence            3346677776    99999999999   8989999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.5e-33  Score=305.81  Aligned_cols=269  Identities=14%  Similarity=0.174  Sum_probs=226.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCe------EEEEEec-CCcEEEEEEccC----C---CccEEEEEeCCeEEEEECCCCCchhc
Q 005235          390 LEYKGSTDGTVRIWEVESGR------CLRVLEI-GEAIQYVAWNPL----P---ELPVLAVSVGQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~------~l~~l~~-~~~V~~v~~spd----g---~~~lla~s~d~~V~lwd~~~~~~~~~  455 (707)
                      ++++|+.||+|+||++.+++      ++..+.. ...|.+++|+|+    +   . .|++++.++.|++|++.++.... 
T Consensus        28 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~-  105 (397)
T 1sq9_A           28 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-LVATTSFSGDLLFYRITREDETK-  105 (397)
T ss_dssp             EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-EEEEEETTSCEEEEEEEECTTTC-
T ss_pred             eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc-EEEEEcCCCCEEEEEccCCcccc-
Confidence            89999999999999999988      5666665 889999999998    5   4 78888999999999976542200 


Q ss_pred             ccccceeeecccccccCCCCcEEEEecCCccceEEecc-----CCCeEEEEEc----CCCCE-EEEEeCCCCccEEEEEE
Q 005235          456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH-----FKMVSSVEWH----RRGDY-LSTVMPAGESRAIFMHQ  525 (707)
Q Consensus       456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h-----~~~V~~v~~s----p~g~~-lat~s~dg~~~~V~Iwd  525 (707)
                                          ..        ....+..|     ...|.+++|+    |++.+ |++++.++   .|++||
T Consensus       106 --------------------~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd  154 (397)
T 1sq9_A          106 --------------------KV--------IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG---TTYIWK  154 (397)
T ss_dssp             --------------------CE--------EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS---CEEEEE
T ss_pred             --------------------cc--------cceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC---cEEEEe
Confidence                                00        01124456     5899999999    99999 99999988   999999


Q ss_pred             CCC------Cceeee-----ee-c-------cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC---C---
Q 005235          526 LSK------KLSHRI-----PF-K-------LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET---G---  579 (707)
Q Consensus       526 l~~------~~~~~~-----~~-~-------~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~---~---  579 (707)
                      +..      .... .     .+ .       +...|.+++|+|++ +|++++ ++.|++||+.+++.+..+..   |   
T Consensus       155 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~  232 (397)
T 1sq9_A          155 FHPFADESNSLTL-NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN  232 (397)
T ss_dssp             EESSSSHHHHTTT-CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred             CCcccccccccee-eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence            988      5444 3     44 2       68889999999999 888888 89999999999999999998   8   


Q ss_pred             CCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeec-------------CCCCEEEEEEcCCCCEEEEEeC
Q 005235          580 LKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKC-------------HPKDITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       580 ~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~-------------h~~~I~~vafspdg~llaSgs~  643 (707)
                      ...|.+++|+|++.+|++|+.|   |.|++||+.++ +++..+.+             |...|.+++|+|++.+|++++.
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  311 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  311 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence            8999999999999999999999   99999999977 77888988             9999999999999999999999


Q ss_pred             CCcEEEEecccccCCCCCCcccceEEee------CC---------------CCCCCCCeeEEEEcCCC----------CE
Q 005235          644 DCTAYVFHGMVYSDLNQNPLIVPLEILR------GH---------------TSSNGRGVMDCKFHPRQ----------PW  692 (707)
Q Consensus       644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~------gh---------------~~~~~~gV~~l~fspdg----------~~  692 (707)
                      ||.|+||++.      +..   ++..+.      +|               ...    |.+++|+|++          .+
T Consensus       312 dg~i~iwd~~------~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----v~~~~~~~~g~~~~~~~~~~~~  378 (397)
T 1sq9_A          312 DGKLRFWDVK------TKE---RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG----VFDVKFLKKGWRSGMGADLNES  378 (397)
T ss_dssp             TSEEEEEETT------TTE---EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC----EEEEEEECTTTSBSTTCTTSCE
T ss_pred             CCeEEEEEcC------CCc---eeEEEecccCcccchhhhhccccccccccCCc----eeEEEeccccccccccccccce
Confidence            9999999543      333   367777      66               666    9999999998          79


Q ss_pred             EEEEeCCCcEEEEeC
Q 005235          693 LFTAGADSVIRLYCH  707 (707)
Q Consensus       693 L~s~g~Dg~IrlWdl  707 (707)
                      |++++.||.|++|++
T Consensus       379 l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          379 LCCVCLDRSIRWFRE  393 (397)
T ss_dssp             EEEEETTTEEEEEEE
T ss_pred             EEEecCCCcEEEEEc
Confidence            999999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.3e-33  Score=317.96  Aligned_cols=349  Identities=14%  Similarity=0.132  Sum_probs=260.8

Q ss_pred             cccCCCCCccCChh--hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcC--ccccceeecCCCCC
Q 005235          296 ESYNPSLEYIPTQE--ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCP--RVRKKRVNIDPETL  371 (707)
Q Consensus       296 ~synP~ge~L~s~~--~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~p--r~~k~~lnidp~~l  371 (707)
                      -+|+|+|++|++..  .+..|+.....       .....++.+.++...      .+..+.|+|  +.            
T Consensus        24 ~~~spdg~~l~~~~~~~v~v~~~~~~~-------~~~~~~~~~~~h~~~------~v~~~~~sp~~~~------------   78 (615)
T 1pgu_A           24 LSYDPTTNAIAYPCGKSAFVRCLDDGD-------SKVPPVVQFTGHGSS------VVTTVKFSPIKGS------------   78 (615)
T ss_dssp             CEEETTTTEEEEEETTEEEEEECCSSC-------CSSCSEEEECTTTTS------CEEEEEECSSTTC------------
T ss_pred             EEECCCCCEEEEecCCeEEEEECCCCC-------CccccceEEecCCCc------eEEEEEECcCCCC------------
Confidence            37999999998843  34455422110       000334444444433      036777776  54            


Q ss_pred             CCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC--------eEEEEEec-CCcEEEEEEccCCCccEEEEEeC---
Q 005235          372 KPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG--------RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVG---  439 (707)
Q Consensus       372 lp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg--------~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d---  439 (707)
                                       .++++|+.||+|+||++.++        +++..+.. ...|.+++|+|++. .+++++.+   
T Consensus        79 -----------------~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~  140 (615)
T 1pgu_A           79 -----------------QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDN  140 (615)
T ss_dssp             -----------------CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSC
T ss_pred             -----------------CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC-EEEEeccCCCC
Confidence                             48999999999999999865        66667765 88999999999993 66666666   


Q ss_pred             -CeEEEEECCCCCchhcccccceeeeccc------ccccCCCCcEEEEecCCccceE-EeccCC---CeEEEEEcCC-CC
Q 005235          440 -QDVLILNTGLGNEEEQRRVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGI-RLRHFK---MVSSVEWHRR-GD  507 (707)
Q Consensus       440 -~~V~lwd~~~~~~~~~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~-~~~h~~---~V~~v~~sp~-g~  507 (707)
                       +.|.+|+.......+..+...+.++.|.      +++++.++.+++|+........ +..|..   .|.+++|+|+ |+
T Consensus       141 ~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (615)
T 1pgu_A          141 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE  220 (615)
T ss_dssp             SEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred             ccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC
Confidence             5888888544334556677778777775      7788899999999988765543 667888   9999999999 99


Q ss_pred             EEEEEeCCCCccEEEEEECCCCceeeeee-----ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC--
Q 005235          508 YLSTVMPAGESRAIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG--  579 (707)
Q Consensus       508 ~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~--  579 (707)
                      +|++++.++   .|++||+.++... ..+     .|.+.|.+++|+ ++.+|++++ |+.|++||+.+++.+..+..+  
T Consensus       221 ~l~~~~~dg---~i~vwd~~~~~~~-~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  295 (615)
T 1pgu_A          221 FVITVGSDR---KISCFDGKSGEFL-KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  295 (615)
T ss_dssp             EEEEEETTC---CEEEEETTTCCEE-EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             EEEEEeCCC---eEEEEECCCCCEe-EEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence            999999988   9999999998887 666     688999999999 999999998 899999999887666555433  


Q ss_pred             -------------------------------------------CCCeE--------------------------------
Q 005235          580 -------------------------------------------LKEVS--------------------------------  584 (707)
Q Consensus       580 -------------------------------------------~~~I~--------------------------------  584 (707)
                                                                 ...|.                                
T Consensus       296 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v  375 (615)
T 1pgu_A          296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLI  375 (615)
T ss_dssp             CGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCE
T ss_pred             cccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCce
Confidence                                                       22222                                


Q ss_pred             -EEEEcCC------------------------------------------------------------------------
Q 005235          585 -SIAIHPA------------------------------------------------------------------------  591 (707)
Q Consensus       585 -sl~~spd------------------------------------------------------------------------  591 (707)
                       +++| ++                                                                        
T Consensus       376 ~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (615)
T 1pgu_A          376 VSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL  454 (615)
T ss_dssp             EEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred             EEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE
Confidence             2222 11                                                                        


Q ss_pred             -CCEEEEEEC-CCcEEEEECCCCCcce-EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceE
Q 005235          592 -GDNLIVGSR-EGKLCWFDMDLSSKPY-RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLE  668 (707)
Q Consensus       592 -g~~L~sGs~-Dg~I~vwDl~~~~~~~-~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~  668 (707)
                       +.+|++|+. |+.|++||+..+ ... ..+..|...|++++|+|++++|++++.||.|+||++      .+..   ++.
T Consensus       455 ~~~~l~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~------~~~~---~~~  524 (615)
T 1pgu_A          455 SQNYVAVGLEEGNTIQVFKLSDL-EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL------QSRE---VKT  524 (615)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEE-EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEET------TTTE---EEE
T ss_pred             cCCEEEEeecCCCeEEEEECCCc-cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeC------CCCc---cee
Confidence             333444444 455555555432 222 556778999999999999999999999999999954      3333   356


Q ss_pred             EeeC-CCCCCCCCeeEEEEcC----------CCCEEEEEeCCCcEEEEeC
Q 005235          669 ILRG-HTSSNGRGVMDCKFHP----------RQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       669 ~l~g-h~~~~~~gV~~l~fsp----------dg~~L~s~g~Dg~IrlWdl  707 (707)
                      .+.+ |...    |++++|+|          ++.+|++++.||+|++|++
T Consensus       525 ~~~~~h~~~----v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  570 (615)
T 1pgu_A          525 SRWAFRTSK----INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  570 (615)
T ss_dssp             CCSCCCSSC----EEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             EeecCCCCc----eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence            6777 8877    99999999          9999999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.8e-34  Score=308.39  Aligned_cols=223  Identities=16%  Similarity=0.154  Sum_probs=183.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEE-----ecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVL-----EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l-----~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      .+++++.||+|+|||+.+++++...     .+.+.|.+|+|+|++ ..|++++.|+.|++||+.++..            
T Consensus       107 ~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~------------  173 (357)
T 4g56_B          107 GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAV------------  173 (357)
T ss_dssp             EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEE------------
T ss_pred             CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE------------
Confidence            4667889999999999998765432     237899999999999 4788889999999999876521            


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeee---ccCC
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHG  540 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~  540 (707)
                                            ...+.+|...|.+++|++++. +|++++.|+   .|+|||+.++... ..+   .+..
T Consensus       174 ----------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg---~v~~wd~~~~~~~-~~~~~~~~~~  227 (357)
T 4g56_B          174 ----------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDG---RILLWDTRKPKPA-TRIDFCASDT  227 (357)
T ss_dssp             ----------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTS---CEEECCTTSSSCB-CBCCCTTCCS
T ss_pred             ----------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCC---ceEEEECCCCcee-eeeeeccccc
Confidence                                  113557999999999999885 789999988   9999999988765 333   5677


Q ss_pred             CeEEEEEeCCC-CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcceE
Q 005235          541 LPVSSVFHPTR-SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG-DNLIVGSREGKLCWFDMDLSSKPYR  617 (707)
Q Consensus       541 ~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg-~~L~sGs~Dg~I~vwDl~~~~~~~~  617 (707)
                      .+.+++|+|++ .+|++|+ |+.|++||+.+++++.++.+|...|++++|+|++ .+|++|+.|++|+|||++++ +++.
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-~~~~  306 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS-EVFR  306 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC-EEEE
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-cEeE
Confidence            89999999985 5777777 8999999999999999999999999999999987 57899999999999999876 6565


Q ss_pred             EeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecc
Q 005235          618 VLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       618 ~l~~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vwd~~  653 (707)
                      . .+|...|++|+||| ++.+|||||.||+|++|++.
T Consensus       307 ~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          307 D-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             E-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             E-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            4 47999999999999 78999999999999999653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.7e-33  Score=299.20  Aligned_cols=278  Identities=14%  Similarity=0.138  Sum_probs=228.6

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          388 CYLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      +.++++|+.||.|+||++.+++  ++..+.. ...|.+++|+|++ ..+++++.++.|++|++.++...           
T Consensus        20 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~-----------   87 (372)
T 1k8k_C           20 RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWK-----------   87 (372)
T ss_dssp             SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEE-----------
T ss_pred             CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCeee-----------
Confidence            4589999999999999999997  7788875 8899999999998 47888888999999997554210           


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee--ccCC
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF--KLHG  540 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~--~~~~  540 (707)
                                           .......|...|.+++|+|++.+|++++.++   .|++|++......  ...+  .|..
T Consensus        88 ---------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~~~  143 (372)
T 1k8k_C           88 ---------------------PTLVILRINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIKKPIRS  143 (372)
T ss_dssp             ---------------------EEEECCCCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEECTTCCS
T ss_pred             ---------------------eeEEeecCCCceeEEEECCCCCEEEEEeCCC---EEEEEEecCCCcceeeeeeecccCC
Confidence                                 0012346889999999999999999999988   9999999887631  0233  6789


Q ss_pred             CeEEEEEeCCCCEEEEEe-CCeEEEEEC------------------CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q 005235          541 LPVSSVFHPTRSIFFVST-KKNIRVYDL------------------LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE  601 (707)
Q Consensus       541 ~V~~v~fspd~~~l~v~s-dg~I~iwDl------------------~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D  601 (707)
                      .|.+++|+|++.+|++++ |+.|++||+                  ..++++..+..|...|.+++|+|+|.+|++|+.|
T Consensus       144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  223 (372)
T 1k8k_C          144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  223 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence            999999999999999998 899999995                  4678888998999999999999999999999999


Q ss_pred             CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc--cc--CCCC-----------------
Q 005235          602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV--YS--DLNQ-----------------  660 (707)
Q Consensus       602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~--~~--Dl~~-----------------  660 (707)
                      |.|++||+.++ +++..+..|...|.+++|+|++.+|++| .|+.|++|++..  ..  -+..                 
T Consensus       224 ~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (372)
T 1k8k_C          224 STVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER  301 (372)
T ss_dssp             TEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHH
T ss_pred             CEEEEEECCCC-ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhh
Confidence            99999999977 7888999999999999999999988888 899999998754  10  0000                 


Q ss_pred             ----CCcccce------EEe-eCCCCCCCCCeeEEEEc-CCC---CEEEEEeCCCcEEEEeC
Q 005235          661 ----NPLIVPL------EIL-RGHTSSNGRGVMDCKFH-PRQ---PWLFTAGADSVIRLYCH  707 (707)
Q Consensus       661 ----~~~~~pl------~~l-~gh~~~~~~gV~~l~fs-pdg---~~L~s~g~Dg~IrlWdl  707 (707)
                          .......      ..+ .+|...    |++++|+ ++|   .+|+||+.||+|++|++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          302 FQNLDKKASSEGSAAAGAGLDSLHKNS----VSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             HHHCCCCC---------CCCSSSSSSC----EEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             hhhcccccccccCccccccccccccCC----cceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                0000000      223 488887    9999977 666   89999999999999984

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.6e-33  Score=298.31  Aligned_cols=277  Identities=14%  Similarity=0.163  Sum_probs=222.2

Q ss_pred             cEEEEEeC---CCcEEEEeCCCCeEEEEE--ecCCcEEEEEEccCC--CccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235          389 YLEYKGST---DGTVRIWEVESGRCLRVL--EIGEAIQYVAWNPLP--ELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       389 ~~l~sgs~---DgtVrIWd~~tg~~l~~l--~~~~~V~~v~~spdg--~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      .++++|+.   ||+|+||++.++++....  .+...|.+++|+|++  ...+++++.++.|++|++.++..         
T Consensus        32 ~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------  102 (357)
T 3i2n_A           32 KFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM---------  102 (357)
T ss_dssp             EEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS---------
T ss_pred             eEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc---------
Confidence            36778876   999999999998875443  458899999999982  24788899999999999876531         


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE------cCCCCEEEEEeCCCCccEEEEEECCCCceeeee
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW------HRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP  535 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~------sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~  535 (707)
                                              ....+.+|...|.+++|      ++++++|++++.|+   .|++||+.........
T Consensus       103 ------------------------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~  155 (357)
T 3i2n_A          103 ------------------------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG---TVKVWDPRQKDDPVAN  155 (357)
T ss_dssp             ------------------------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS---CEEEECTTSCSSCSEE
T ss_pred             ------------------------cEEEEEecccceEEEeeccccccCCCccEEEEEeCCC---eEEEEeCCCCCCccee
Confidence                                    11235579999999954      68999999999998   9999999987632155


Q ss_pred             e-ccCC----CeEEEE----EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC---CCCEEEEEECCC
Q 005235          536 F-KLHG----LPVSSV----FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP---AGDNLIVGSREG  602 (707)
Q Consensus       536 ~-~~~~----~V~~v~----fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp---dg~~L~sGs~Dg  602 (707)
                      + .+.+    .+.+++    |+|++.+|++++ ++.|++||+.+++.... ..+...|.+++|+|   ++.+|++|+.||
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEG  234 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence            5 3333    788988    688999999998 89999999999987544 56778999999999   999999999999


Q ss_pred             cEEEEECCCCCcceEEe-----ecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCC----------CCcccc
Q 005235          603 KLCWFDMDLSSKPYRVL-----KCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQ----------NPLIVP  666 (707)
Q Consensus       603 ~I~vwDl~~~~~~~~~l-----~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~----------~~~~~p  666 (707)
                      .|++||+.++ .+...+     .+|...|++++|+|+++ +|++|+.||.|+||++........          .....+
T Consensus       235 ~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~  313 (357)
T 3i2n_A          235 KFHVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSL  313 (357)
T ss_dssp             EEEEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEE
T ss_pred             eEEEEeCcCC-CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccce
Confidence            9999999865 443333     48999999999999999 899999999999998753321100          001135


Q ss_pred             eEEeeCCCCCCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEeC
Q 005235          667 LEILRGHTSSNGRGVMDCKFHPRQPWLF-TAGADSVIRLYCH  707 (707)
Q Consensus       667 l~~l~gh~~~~~~gV~~l~fspdg~~L~-s~g~Dg~IrlWdl  707 (707)
                      +..+.+|...    |.+++|+|++++|+ +++.||.|+||++
T Consensus       314 ~~~~~~~~~~----v~~~~~s~~~~~l~~s~~~d~~i~iw~~  351 (357)
T 3i2n_A          314 LQNVTLSTQP----ISSLDWSPDKRGLCVCSSFDQTVRVLIV  351 (357)
T ss_dssp             EEEEECCSSC----EEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             eeccccCCCC----eeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence            7888999887    99999999999998 8999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8.9e-33  Score=324.45  Aligned_cols=269  Identities=16%  Similarity=0.185  Sum_probs=219.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCC-----CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235          388 CYLEYKGSTDGTVRIWEVES-----GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~t-----g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      ..+|+|||.||+|+||++.+     +.+.+.+.+ ...|.+++|+|++ ..|++++.|++|+|||+.++..         
T Consensus       395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~~---------  464 (694)
T 3dm0_A          395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGVS---------  464 (694)
T ss_dssp             CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE---------
T ss_pred             CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcc---------
Confidence            35899999999999999875     445566665 7899999999999 4788888999999999876421         


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee----c
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----K  537 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~  537 (707)
                                               ...+.+|...|.+++|+|++.+|++++.|+   +|+|||+...... ...    .
T Consensus       465 -------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~---~i~iwd~~~~~~~-~~~~~~~~  515 (694)
T 3dm0_A          465 -------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDR---TIKLWNTLGECKY-TISEGGEG  515 (694)
T ss_dssp             -------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTS---CEEEECTTSCEEE-EECSSTTS
T ss_pred             -------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCC---EEEEEECCCCcce-eeccCCCC
Confidence                                     123568999999999999999999999998   9999998765443 221    5


Q ss_pred             cCCCeEEEEEeCCC--CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q 005235          538 LHGLPVSSVFHPTR--SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK  614 (707)
Q Consensus       538 ~~~~V~~v~fspd~--~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~  614 (707)
                      |...|.+++|+|++  ..|++++ |++|++||+.++++...+.+|...|++++|+|+|.+|++|+.||.|++||+.++ +
T Consensus       516 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-~  594 (694)
T 3dm0_A          516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-K  594 (694)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT-E
T ss_pred             CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-c
Confidence            77889999999986  5788888 999999999999999999999999999999999999999999999999999987 6


Q ss_pred             ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCC---------------CCC
Q 005235          615 PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS---------------NGR  679 (707)
Q Consensus       615 ~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~---------------~~~  679 (707)
                      ++..+.. ...|.+++|+|++.+|++++ |+.|+|||+.      +...   +..+..+...               ...
T Consensus       595 ~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (694)
T 3dm0_A          595 KLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLE------SKSI---VEDLKVDLKAEAEKADNSGPAATKRKVI  663 (694)
T ss_dssp             EEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETT------TTEE---EEEECCCCC----------------CCC
T ss_pred             eEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECC------CCCC---hhhhccccccccccccccccccCCceeE
Confidence            6666654 46799999999999888776 4569999654      3322   2222221100               011


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          680 GVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       680 gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .|++++|+|+|.+|+||+.||+|+||++
T Consensus       664 ~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          664 YCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence            2789999999999999999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-33  Score=301.05  Aligned_cols=269  Identities=13%  Similarity=0.139  Sum_probs=224.7

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec------CCcEEEEEEccCCC---ccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI------GEAIQYVAWNPLPE---LPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~------~~~V~~v~~spdg~---~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      ..+++++.++.|+||++.+++.+..+..      ...|.+++|+|++.   ..|++++.++.|++|++.++..       
T Consensus        35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------  107 (366)
T 3k26_A           35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-------  107 (366)
T ss_dssp             CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-------
T ss_pred             ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-------
Confidence            3566666677999999998887777663      47899999999942   3688888999999999766422       


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee--
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--  536 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--  536 (707)
                                                 ...+.+|...|.+++|+| ++.+|++++.|+   .|++||+.++... ..+  
T Consensus       108 ---------------------------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~-~~~~~  156 (366)
T 3k26_A          108 ---------------------------IKHYVGHGNAINELKFHPRDPNLLLSVSKDH---ALRLWNIQTDTLV-AIFGG  156 (366)
T ss_dssp             ---------------------------EEEEESCCSCEEEEEECSSCTTEEEEEETTS---CEEEEETTTTEEE-EEECS
T ss_pred             ---------------------------eeeecCCCCcEEEEEECCCCCCEEEEEeCCC---eEEEEEeecCeEE-EEecc
Confidence                                       113457999999999999 999999999998   9999999988776 554  


Q ss_pred             --ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE----------------------------eCCCCCeEE
Q 005235          537 --KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL----------------------------ETGLKEVSS  585 (707)
Q Consensus       537 --~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l----------------------------~~~~~~I~s  585 (707)
                        .+...|.+++|+|++.+|++++ |+.|++||+.+++.+..+                            ..|...|.+
T Consensus       157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  236 (366)
T 3k26_A          157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC  236 (366)
T ss_dssp             TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred             cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence              6889999999999999999998 899999999876543322                            338889999


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEECCCCC-------------cceEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 005235          586 IAIHPAGDNLIVGSREGKLCWFDMDLSS-------------KPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCTAYVF  650 (707)
Q Consensus       586 l~~spdg~~L~sGs~Dg~I~vwDl~~~~-------------~~~~~l~~h~~~I~~vafspd--g~llaSgs~Dg~I~Vw  650 (707)
                      ++|+  +++|++|+.||.|++||+.+..             ..+..+..|...|++++|+|+  +.+|++|+.||.|+||
T Consensus       237 ~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw  314 (366)
T 3k26_A          237 VRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW  314 (366)
T ss_dssp             EEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEE
T ss_pred             EEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEE
Confidence            9998  7899999999999999998653             237788899999999999999  9999999999999999


Q ss_pred             ecccccCCCCCCcc-cceEEeeCC--CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          651 HGMVYSDLNQNPLI-VPLEILRGH--TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       651 d~~~~~Dl~~~~~~-~pl~~l~gh--~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ++.      ..... ..+..+.+|  ...    |.+++|+|++++|++++.||.|++||+
T Consensus       315 d~~------~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          315 DLE------VEDPHKAKCTTLTHHKCGAA----IRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             ECC------SSSGGGCEEEEECCTTCCSC----EEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             ECC------CCCCccccceEEcccccCCc----eEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            653      33322 245578887  455    999999999999999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1e-32  Score=298.86  Aligned_cols=263  Identities=15%  Similarity=0.166  Sum_probs=213.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEcc-CCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLE---IGEAIQYVAWNP-LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~---~~~~V~~v~~sp-dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      .++++|+.||+|+|||+.+++....+.   +.+.|.+++|+| ++ ..|++++.|+.|++|++....             
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~-------------  152 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT-NQLFVSSIRGATTLRDFSGSV-------------  152 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE-EEEEEEETTTEEEEEETTSCE-------------
T ss_pred             CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC-CEEEEEeCCCEEEEEECCCCc-------------
Confidence            489999999999999999998887776   488999999999 55 578888899999999976421             


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV  543 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~  543 (707)
                                  +..+.       ....|...|.+++|+|++.+|++++.|+   .|++||+. +... ..+ .|.+.|.
T Consensus       153 ------------~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~-~~~~-~~~~~h~~~v~  208 (383)
T 3ei3_B          153 ------------IQVFA-------KTDSWDYWYCCVDVSVSRQMLATGDSTG---RLLLLGLD-GHEI-FKEKLHKAKVT  208 (383)
T ss_dssp             ------------EEEEE-------CCCCSSCCEEEEEEETTTTEEEEEETTS---EEEEEETT-SCEE-EEEECSSSCEE
T ss_pred             ------------eEEEe-------ccCCCCCCeEEEEECCCCCEEEEECCCC---CEEEEECC-CCEE-EEeccCCCcEE
Confidence                        11110       0124568899999999999999999998   99999994 4444 666 8999999


Q ss_pred             EEEEeCCCC-EEEEEe-CCeEEEEECCC----CeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcce
Q 005235          544 SSVFHPTRS-IFFVST-KKNIRVYDLLK----QRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       544 ~v~fspd~~-~l~v~s-dg~I~iwDl~~----~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                      +++|+|+++ +|++++ |+.|++||+.+    +.++..+ .|...|.+++|+| +|.+|++|+.|+.|++||+.++ ...
T Consensus       209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~  286 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKP  286 (383)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSC
T ss_pred             EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-ccc
Confidence            999999999 888888 89999999997    6677777 6889999999999 9999999999999999999977 444


Q ss_pred             EEeecCC-----------------CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC--CCCC
Q 005235          617 RVLKCHP-----------------KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH--TSSN  677 (707)
Q Consensus       617 ~~l~~h~-----------------~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh--~~~~  677 (707)
                      ..+.+|.                 ..+..++|+|++.+  +|+.||+|+|||+      .++..   +..+.+|  ... 
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~------~~~~~---~~~l~~~~~~~~-  354 (383)
T 3ei3_B          287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDA------NSGGL---VHQLRDPNAAGI-  354 (383)
T ss_dssp             SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEET------TTCCE---EEEECBTTBCSC-
T ss_pred             cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEec------CCCce---eeeecCCCCCce-
Confidence            5555443                 23444566666655  6778999999954      44433   6778774  444 


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          678 GRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       678 ~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                         +..++|+|++++|++|+ ||.|+||++
T Consensus       355 ---~~~~~~s~~g~~l~s~s-d~~i~iw~~  380 (383)
T 3ei3_B          355 ---ISLNKFSPTGDVLASGM-GFNILIWNR  380 (383)
T ss_dssp             ---CCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred             ---EEEEEEecCccEEEEec-CCcEEEEec
Confidence               77789999999999997 999999986

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.7e-33  Score=344.11  Aligned_cols=314  Identities=14%  Similarity=0.163  Sum_probs=268.2

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKD  460 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~  460 (707)
                      |+.++.++++|+.||+|+|||+.+++++..+.. .+.|.+++|+|++ ..+++++.|+.|++||+.++..  .+..+...
T Consensus       623 ~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~  701 (1249)
T 3sfz_A          623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKLVHTYDEHSEQ  701 (1249)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCCc
Confidence            555667999999999999999999999999986 8899999999999 4788888999999999998864  34567777


Q ss_pred             eeeeccc-------ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235          461 LLHVETP-------TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH  532 (707)
Q Consensus       461 v~~~~~~-------~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~  532 (707)
                      +.++.|.       +++++.++.+++|+..++... .+.+|.+.|.+++|+|+|.+|++++.|+   .|++||+.++...
T Consensus       702 v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg---~v~vwd~~~~~~~  778 (1249)
T 3sfz_A          702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG---TLRLWDVRSANER  778 (1249)
T ss_dssp             EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS---EEEEEEGGGTEEE
T ss_pred             EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC---eEEEEeCCCCccc
Confidence            7777774       678899999999999876644 4678999999999999999999999998   9999999887655


Q ss_pred             eeeec--------------cCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEE
Q 005235          533 RIPFK--------------LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGDNLIV  597 (707)
Q Consensus       533 ~~~~~--------------~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~~L~s  597 (707)
                       ..+.              ....+.+++|+|++..+++++++.|.+||+.++..+..+. +|...|.+++|+|++.++++
T Consensus       779 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  857 (1249)
T 3sfz_A          779 -KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI  857 (1249)
T ss_dssp             -EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE
T ss_pred             -ceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE
Confidence             3331              2337889999999999999999999999999998887776 78889999999999999999


Q ss_pred             EECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC-------------------
Q 005235          598 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL-------------------  658 (707)
Q Consensus       598 Gs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl-------------------  658 (707)
                      |+.||.|++||+.++ .....+.+|...|++++|+|++.+|++++.||+|++|+.......                   
T Consensus       858 ~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  936 (1249)
T 3sfz_A          858 ALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM  936 (1249)
T ss_dssp             ECSSSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEE
T ss_pred             EeCCCeEEEEEcCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcE
Confidence            999999999999987 788899999999999999999999999999999999985421000                   


Q ss_pred             ---------------------------------------------------CCCCcccceEEeeCCCCCCCCCeeEEEEc
Q 005235          659 ---------------------------------------------------NQNPLIVPLEILRGHTSSNGRGVMDCKFH  687 (707)
Q Consensus       659 ---------------------------------------------------~~~~~~~pl~~l~gh~~~~~~gV~~l~fs  687 (707)
                                                                         .......++..+.+|...    |.+++|+
T Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~----v~~l~~s 1012 (1249)
T 3sfz_A          937 VLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA----VRHIQFT 1012 (1249)
T ss_dssp             EEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC----CCCEEEC
T ss_pred             EEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc----eEEEEEC
Confidence                                                               000011234566778777    9999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeC
Q 005235          688 PRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       688 pdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |++++|++++.||+|++|++
T Consensus      1013 ~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A         1013 ADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp             SSSSCEEEECSSSBEEEEET
T ss_pred             CCCCEEEEEcCCCEEEEEEC
Confidence            99999999999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=308.42  Aligned_cols=316  Identities=10%  Similarity=0.125  Sum_probs=242.1

Q ss_pred             cccCCCCCccCChhhhhhhhccCcCCCCcccCcccceeccc-ccccccccccceeeeeEEEcC-ccccceeecCCCCCCC
Q 005235          296 ESYNPSLEYIPTQEELNSYQLMYEEDRPKFIPRRFTSLRSV-PAYENAVKDSFERCMDLYLCP-RVRKKRVNIDPETLKP  373 (707)
Q Consensus       296 ~synP~ge~L~s~~~~~~W~~~~~~dr~~~lp~~~~~lr~v-~~~~~~i~e~f~rcldL~l~p-r~~k~~lnidp~~llp  373 (707)
                      ..|+|++..+++..   .|.           | ....+..+ .++       ...+..+.++| +.              
T Consensus        33 ~~f~~~~~~~~~~~---~w~-----------~-~g~~~~~~~~~h-------~~~V~~~~~s~~~~--------------   76 (437)
T 3gre_A           33 KEFGPIQEIVRSPN---MGN-----------L-RGKLIATLMENE-------PNSITSSAVSPGET--------------   76 (437)
T ss_dssp             GGGCCCCCCCCCCC---GGG-----------C-CCCEEEEECTTT-------TSCEEEEEEECSSS--------------
T ss_pred             hhcCCccccccccc---ccc-----------c-cceEEeeeccCC-------CCceEEEEECCCCC--------------
Confidence            36999999998865   354           1 12334444 333       34447788886 43              


Q ss_pred             CCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCC---Ce---EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235          374 KLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVES---GR---CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT  447 (707)
Q Consensus       374 ~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~t---g~---~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~  447 (707)
                                     .++++|+.||+|+|||+.+   +.   +...+.+.+.|.+|+|+|++ ..|++++.|+.|++|++
T Consensus        77 ---------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~  140 (437)
T 3gre_A           77 ---------------PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKV  140 (437)
T ss_dssp             ---------------CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEE
T ss_pred             ---------------CEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEe
Confidence                           4899999999999999876   43   34555678999999999998 47888999999999997


Q ss_pred             C---CCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEec--cCCCeEEEE--EcCCCCEEEEEeCCCCccE
Q 005235          448 G---LGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLR--HFKMVSSVE--WHRRGDYLSTVMPAGESRA  520 (707)
Q Consensus       448 ~---~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~--h~~~V~~v~--~sp~g~~lat~s~dg~~~~  520 (707)
                      .   .+..........+                ...        .+..  +...+.++.  +++++.+|++++.|+   .
T Consensus       141 ~~~~~~~~~~~~~~~~i----------------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~  193 (437)
T 3gre_A          141 NHYQQESEVKFLNCECI----------------RKI--------NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS---R  193 (437)
T ss_dssp             EEEEETTEEEEEEEEEE----------------EEE--------EGGGGSSCCCEEEEEEEECSSCEEEEEEETTS---E
T ss_pred             ccccCCceeecccccee----------------EEE--------EccCcccccCceEEEEEEcCCCCEEEEEeCCC---e
Confidence            4   2211100000000                000        0111  567788888  668999999999998   9


Q ss_pred             EEEEECCCCceeeeee-c--cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEc----CC
Q 005235          521 IFMHQLSKKLSHRIPF-K--LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIH----PA  591 (707)
Q Consensus       521 V~Iwdl~~~~~~~~~~-~--~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~s----pd  591 (707)
                      |++||+.++... ..+ .  |.+.|.+++|+|++.+|++++ |+.|++||+++++++..+. .|...|.+++|+    |+
T Consensus       194 i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~  272 (437)
T 3gre_A          194 VIIFDIRTLERL-QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN  272 (437)
T ss_dssp             EEEEETTTCCEE-EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred             EEEEeCCCCeee-EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence            999999998887 777 4  789999999999999999998 8999999999999999886 677889999665    46


Q ss_pred             CCEEEEEECCCcEEEEECCCCCcceEEeec--------------------------CCCCEEEEEEcCCCCEEEEEeCCC
Q 005235          592 GDNLIVGSREGKLCWFDMDLSSKPYRVLKC--------------------------HPKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       592 g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~--------------------------h~~~I~~vafspdg~llaSgs~Dg  645 (707)
                      +.+|++|+.||.|++||+.++ .+...+.+                          |...|++++|+ ++++|++|+.||
T Consensus       273 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~  350 (437)
T 3gre_A          273 SVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS  350 (437)
T ss_dssp             EEEEEEESTTEEEEEEETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT
T ss_pred             ccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC
Confidence            789999999999999999877 66666664                          44568889999 778999999999


Q ss_pred             cEEEEecccccCCCCCCcccceEEee-------------------------------------CCCCCCCCCeeEEEEcC
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEILR-------------------------------------GHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~-------------------------------------gh~~~~~~gV~~l~fsp  688 (707)
                      .|++|++....      .   +..+.                                     .|...    |++++|++
T Consensus       351 ~i~~wd~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----I~~i~~~~  417 (437)
T 3gre_A          351 SIVMFSLNELS------S---SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDI----INSISTCE  417 (437)
T ss_dssp             EEEEEETTCGG------G---CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCC----EEEEEEEE
T ss_pred             eEEEEECCCcc------c---ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccc----eeeEeeec
Confidence            99999765322      1   22222                                     37766    99999999


Q ss_pred             C--CCEEEEEeCCCcEEEEe
Q 005235          689 R--QPWLFTAGADSVIRLYC  706 (707)
Q Consensus       689 d--g~~L~s~g~Dg~IrlWd  706 (707)
                      +  +.+|+||+.||+|+||+
T Consensus       418 ~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          418 VDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SSSSEEEEEEETTSCEEEEC
T ss_pred             cCCceEEEEEcCCceEEEeC
Confidence            8  78999999999999995

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-31  Score=279.13  Aligned_cols=260  Identities=14%  Similarity=0.153  Sum_probs=223.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++|+.||+|+|||+.++++...+.. ...|.+++|+|++ ..+++++.++.|++|++......              
T Consensus        30 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~--------------   94 (313)
T 3odt_A           30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATSGE--------------   94 (313)
T ss_dssp             TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCTTS--------------
T ss_pred             CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecCCC--------------
Confidence            4899999999999999999998887776 8999999999999 47888899999999997653210              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                       .....+..|...|.+++|  ++++|++++.|+   .|++||  ..... ..+ .+...+.+++
T Consensus        95 -----------------~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~---~i~~~d--~~~~~-~~~~~~~~~v~~~~  149 (313)
T 3odt_A           95 -----------------DPLYTLIGHQGNVCSLSF--QDGVVISGSWDK---TAKVWK--EGSLV-YNLQAHNASVWDAK  149 (313)
T ss_dssp             -----------------CC-CEECCCSSCEEEEEE--ETTEEEEEETTS---EEEEEE--TTEEE-EEEECCSSCEEEEE
T ss_pred             -----------------CcccchhhcccCEEEEEe--cCCEEEEEeCCC---CEEEEc--CCcEE-EecccCCCceeEEE
Confidence                             111235579999999999  578999999988   999999  44444 556 8899999999


Q ss_pred             EeC-CCCEEEEEe-CCeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235          547 FHP-TRSIFFVST-KKNIRVYDLLKQRLIKKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP  623 (707)
Q Consensus       547 fsp-d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~  623 (707)
                      |+| ++.+|++++ |+.|++||  .++....+.. +...|.+++|+|++. |++|+.||.|++||+.++ +++..+.+|.
T Consensus       150 ~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~  225 (313)
T 3odt_A          150 VVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHE  225 (313)
T ss_dssp             EEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCS
T ss_pred             EccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCC
Confidence            998 899999988 89999999  5667777777 888999999999998 999999999999999987 7888999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235          624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR  703 (707)
Q Consensus       624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir  703 (707)
                      ..|++++|+|++ .|++++.||.|++|      |+.+..   ++..+..|...    |.+++|+|++. |++++.||.|+
T Consensus       226 ~~i~~~~~~~~~-~l~~~~~dg~v~iw------d~~~~~---~~~~~~~~~~~----i~~~~~~~~~~-~~~~~~dg~i~  290 (313)
T 3odt_A          226 SFVYCIKLLPNG-DIVSCGEDRTVRIW------SKENGS---LKQVITLPAIS----IWSVDCMSNGD-IIVGSSDNLVR  290 (313)
T ss_dssp             SCEEEEEECTTS-CEEEEETTSEEEEE------CTTTCC---EEEEEECSSSC----EEEEEECTTSC-EEEEETTSCEE
T ss_pred             ceEEEEEEecCC-CEEEEecCCEEEEE------ECCCCc---eeEEEeccCce----EEEEEEccCCC-EEEEeCCCcEE
Confidence            999999999999 58899999999999      444444   37788899877    99999999998 66799999999


Q ss_pred             EEeC
Q 005235          704 LYCH  707 (707)
Q Consensus       704 lWdl  707 (707)
                      +|++
T Consensus       291 iw~~  294 (313)
T 3odt_A          291 IFSQ  294 (313)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            9985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.2e-32  Score=298.59  Aligned_cols=279  Identities=11%  Similarity=0.066  Sum_probs=215.9

Q ss_pred             EEecCCcEEEEEEccCCCccEEEEEeC-------CeEEEEECCCCCch------------hcccccceeeeccc------
Q 005235          413 VLEIGEAIQYVAWNPLPELPVLAVSVG-------QDVLILNTGLGNEE------------EQRRVKDLLHVETP------  467 (707)
Q Consensus       413 ~l~~~~~V~~v~~spdg~~~lla~s~d-------~~V~lwd~~~~~~~------------~~~~~~~v~~~~~~------  467 (707)
                      .+..+.+|.|++|+|++ ..|++++.+       +.|++|++......            +..+...+.++.+.      
T Consensus        10 ~~~~g~PV~sv~fs~dg-~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~   88 (365)
T 4h5i_A           10 SYNVGYPAYGAKFLNND-TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILV   88 (365)
T ss_dssp             EEECSSCEEEEEEEETT-EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEE
T ss_pred             ecCCCCCEEEEEEeCCC-cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEE
Confidence            34446799999999999 344444432       35999998765431            12233333333332      


Q ss_pred             --------ccccCCCCcEEEEecCCccceE----------EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235          468 --------TAPDDNMASIVSWLQHDKLDGI----------RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK  529 (707)
Q Consensus       468 --------~~~~~~d~~i~iW~~~~~~~~~----------~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~  529 (707)
                              ++.++.++.+++|+........          ...+...+.+++|||+|+++++++.+. +++|+|||+.++
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~-d~~i~iwd~~~~  167 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV-PAIMRIIDPSDL  167 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS-SCEEEEEETTTT
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC-CCEEEEeECCCC
Confidence                    5567788999999876432211          113445689999999999988766322 339999999998


Q ss_pred             ceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEE--EeCCCCCeEEEEEcCCCCEEEEEECCC----c
Q 005235          530 LSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKK--LETGLKEVSSIAIHPAGDNLIVGSREG----K  603 (707)
Q Consensus       530 ~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~--l~~~~~~I~sl~~spdg~~L~sGs~Dg----~  603 (707)
                      ... ..+.+.+.|.+++|+|++.+|++++++.+++|+..+++.+..  ...|...|.+++|+|+|.++++++.|+    .
T Consensus       168 ~~~-~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~  246 (365)
T 4h5i_A          168 TEK-FEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV  246 (365)
T ss_dssp             EEE-EEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred             cEE-EEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence            877 677888899999999999999999988889999888766543  345777899999999999999999887    5


Q ss_pred             EEEEECCCCCc---ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE-eeCCCCCCCC
Q 005235          604 LCWFDMDLSSK---PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI-LRGHTSSNGR  679 (707)
Q Consensus       604 I~vwDl~~~~~---~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~-l~gh~~~~~~  679 (707)
                      +.+|++.....   ....+.+|...|++++|||+|++||+|+.|++|+|||+      .+..   ++.. +.+|...   
T Consensus       247 i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~------~~~~---~~~~~~~gH~~~---  314 (365)
T 4h5i_A          247 LTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL------KDLS---MSKIFKQAHSFA---  314 (365)
T ss_dssp             EEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET------TTTE---EEEEETTSSSSC---
T ss_pred             EeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC------CCCc---EEEEecCcccCC---
Confidence            78888875522   23567789999999999999999999999999999954      3333   3555 5799988   


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          680 GVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       680 gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                       |++|+|+|||++|||||.|++||||+|
T Consensus       315 -V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          315 -ITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             -EEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             -EEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence             999999999999999999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-32  Score=295.24  Aligned_cols=277  Identities=14%  Similarity=0.118  Sum_probs=225.5

Q ss_pred             CCCCCCCcc-----ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCcc
Q 005235          288 KPKLPGHEE-----SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRV  359 (707)
Q Consensus       288 k~~lpgh~~-----synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~  359 (707)
                      ...|.||..     +|+|++.+|++++.   ++.|+           .........+..+...       +..+.++|++
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd-----------~~~~~~~~~~~~~~~~-------v~~~~~sp~g  118 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD-----------SFTTNKEHAVTMPCTW-------VMACAYAPSG  118 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE-----------TTTCCEEEEEECSSSC-------CCEEEECTTS
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEE-----------CCCCCcceEEecCCCC-------EEEEEECCCC
Confidence            346788987     59999999999654   44444           2223333333332222       2455666543


Q ss_pred             ccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC------eEEEEEe-cCCcEEEEEEccCCCcc
Q 005235          360 RKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG------RCLRVLE-IGEAIQYVAWNPLPELP  432 (707)
Q Consensus       360 ~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg------~~l~~l~-~~~~V~~v~~spdg~~~  432 (707)
                                                   .++++|+.|+++++|++...      .....+. +.+.|.+++|+|++ ..
T Consensus       119 -----------------------------~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~  168 (354)
T 2pbi_B          119 -----------------------------CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQ  168 (354)
T ss_dssp             -----------------------------SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SE
T ss_pred             -----------------------------CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CE
Confidence                                         58999999999999998643      2223333 37899999999998 47


Q ss_pred             EEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC--CCCEEE
Q 005235          433 VLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR--RGDYLS  510 (707)
Q Consensus       433 lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp--~g~~la  510 (707)
                      |++++.|++|++||+.++..                                  ...+.+|...|.+++|+|  +|++|+
T Consensus       169 l~t~s~D~~v~lwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          169 ILTASGDGTCALWDVESGQL----------------------------------LQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             EEEEETTSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             EEEEeCCCcEEEEeCCCCeE----------------------------------EEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence            99999999999999876522                                  123558999999999987  578999


Q ss_pred             EEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC--CCCeEEE
Q 005235          511 TVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG--LKEVSSI  586 (707)
Q Consensus       511 t~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~--~~~I~sl  586 (707)
                      +++.|+   .|++||+.++... ..+ .|...|.+++|+|++.+|++++ |++|++||+++++.+..+..+  ...++++
T Consensus       215 sgs~Dg---~v~~wd~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~  290 (354)
T 2pbi_B          215 SGGCDK---KAMVWDMRSGQCV-QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV  290 (354)
T ss_dssp             EEETTS---CEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             EEeCCC---eEEEEECCCCcEE-EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEE
Confidence            999998   9999999999887 778 8999999999999999999999 999999999998887777543  2468999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          587 AIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       587 ~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      +|+|+|.+|++|+.|+.|++||+.++ .++..+.+|...|++++|+|++.+||+|+.||+|+||+
T Consensus       291 ~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          291 DFSLSGRLLFAGYNDYTINVWDVLKG-SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTC-SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEeCCCCEEEEEECCCcEEEEECCCC-ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999877 67888999999999999999999999999999999993

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-32  Score=330.75  Aligned_cols=307  Identities=13%  Similarity=0.118  Sum_probs=238.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-hcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-EQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-~~~~~~~v~~~~~~  467 (707)
                      .+|++|+.||+|+||+..+++++..+.+...|.+|+|+| +. .|++++.|++|++||+.++... ...+...+.++.|.
T Consensus        30 ~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~s  107 (902)
T 2oaj_A           30 NLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTD  107 (902)
T ss_dssp             TEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECC
T ss_pred             CEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEEC
Confidence            499999999999999999998887777788999999999 63 6999999999999999887542 11244567777776


Q ss_pred             -----ccccCCCCcEEEEecCCccce------------EEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCC
Q 005235          468 -----TAPDDNMASIVSWLQHDKLDG------------IRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKK  529 (707)
Q Consensus       468 -----~~~~~~d~~i~iW~~~~~~~~------------~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~  529 (707)
                           +++++.++.|++|++.+....            ...+|.+.|.+++|+|+ +..|++++.|+   .| +||+.++
T Consensus       108 p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg---~v-lWd~~~~  183 (902)
T 2oaj_A          108 ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV---TL-TYSLVEN  183 (902)
T ss_dssp             TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC---EE-EEETTTT
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC---cE-EEECCCC
Confidence                 888999999999999876542            12468899999999996 57899999888   99 9999998


Q ss_pred             ceeeeee-cc------------------CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE--Ee---CC-----
Q 005235          530 LSHRIPF-KL------------------HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK--LE---TG-----  579 (707)
Q Consensus       530 ~~~~~~~-~~------------------~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~--l~---~~-----  579 (707)
                      ... ..+ .+                  ...|.+++|+|++.+|++++ |++|++||+.+++++..  +.   .|     
T Consensus       184 ~~~-~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~  262 (902)
T 2oaj_A          184 EIK-QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD  262 (902)
T ss_dssp             EEE-EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTT
T ss_pred             ceE-EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCc
Confidence            776 566 33                  46799999999999999998 99999999976544321  00   00     


Q ss_pred             --------CCCe--------------------------------------------------------------------
Q 005235          580 --------LKEV--------------------------------------------------------------------  583 (707)
Q Consensus       580 --------~~~I--------------------------------------------------------------------  583 (707)
                              ...|                                                                    
T Consensus       263 ~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  342 (902)
T 2oaj_A          263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTN  342 (902)
T ss_dssp             CCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSS
T ss_pred             CCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCC
Confidence                    0011                                                                    


Q ss_pred             --------------------------------------------------------------EEE---------------
Q 005235          584 --------------------------------------------------------------SSI---------------  586 (707)
Q Consensus       584 --------------------------------------------------------------~sl---------------  586 (707)
                                                                                    +++               
T Consensus       343 ~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~  422 (902)
T 2oaj_A          343 VPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALS  422 (902)
T ss_dssp             SCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHh
Confidence                                                                          111               


Q ss_pred             -------------------EEcCCCCEEEEEECCCcEEEEECCCCCcc----eEE-ee-----cCCCCEEEEEEcCCCCE
Q 005235          587 -------------------AIHPAGDNLIVGSREGKLCWFDMDLSSKP----YRV-LK-----CHPKDITNVAFHRSYPL  637 (707)
Q Consensus       587 -------------------~~spdg~~L~sGs~Dg~I~vwDl~~~~~~----~~~-l~-----~h~~~I~~vafspdg~l  637 (707)
                                         +|+|+|++|++|+.|++|++||+.++...    +.. +.     +|...|++|+|+|++++
T Consensus       423 ~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~  502 (902)
T 2oaj_A          423 AAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLE  502 (902)
T ss_dssp             TTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTE
T ss_pred             cccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCe
Confidence                               22456677888888888888888765210    110 11     78899999999999999


Q ss_pred             EEEEeCCCcEEEEecccccC--------------------CCCCC----------------cccceEEeeCCCCCCCCCe
Q 005235          638 FASCSDDCTAYVFHGMVYSD--------------------LNQNP----------------LIVPLEILRGHTSSNGRGV  681 (707)
Q Consensus       638 laSgs~Dg~I~Vwd~~~~~D--------------------l~~~~----------------~~~pl~~l~gh~~~~~~gV  681 (707)
                      ||+|+.||+|+||++.....                    +...+                ...++..+.+|...    |
T Consensus       503 LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~----V  578 (902)
T 2oaj_A          503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK----T  578 (902)
T ss_dssp             EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS----E
T ss_pred             EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc----E
Confidence            99999999999998764310                    00000                01357889999987    9


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          682 MDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       682 ~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ++|+|+|+| +||+|+.|++|+|||+
T Consensus       579 ~svafSpdG-~lAsgs~D~tv~lwd~  603 (902)
T 2oaj_A          579 SAINNSNIG-FVGIAYAAGSLMLIDR  603 (902)
T ss_dssp             EEEEECBTS-EEEEEETTSEEEEEET
T ss_pred             EEEEecCCc-EEEEEeCCCcEEEEEC
Confidence            999999999 9999999999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-32  Score=293.11  Aligned_cols=260  Identities=18%  Similarity=0.252  Sum_probs=212.1

Q ss_pred             eEEEEEec-C-CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc
Q 005235          409 RCLRVLEI-G-EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL  486 (707)
Q Consensus       409 ~~l~~l~~-~-~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~  486 (707)
                      .++.++.. . +.|.+|+|+|+| ..|++++.|++|+||++..+...                        .       .
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~------------------------~-------~   53 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWI------------------------C-------K   53 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEE------------------------E-------E
T ss_pred             EEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcce------------------------e-------e
Confidence            45666765 3 489999999999 47888999999999997553110                        0       0


Q ss_pred             ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee-eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235          487 DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH-RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIR  563 (707)
Q Consensus       487 ~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~-~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~  563 (707)
                      .....+|...|.+++|+|+|++|++++.|+   .|+||++...... ...+ .|.+.|.+++|+|++.+|++++ |++|+
T Consensus        54 ~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~---~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~  130 (345)
T 3fm0_A           54 SVLSEGHQRTVRKVAWSPCGNYLASASFDA---TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW  130 (345)
T ss_dssp             EEECSSCSSCEEEEEECTTSSEEEEEETTS---CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeeccccCCcEEEEEECCCCCEEEEEECCC---cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEE
Confidence            001247999999999999999999999998   9999999876532 1556 8999999999999999999998 99999


Q ss_pred             EEECCCC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCCEEE
Q 005235          564 VYDLLKQ---RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYPLFA  639 (707)
Q Consensus       564 iwDl~~~---~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~lla  639 (707)
                      +||+.++   .++..+.+|...|.+++|+|++.+|++|+.|+.|++||+..+. .+..++.+|...|++++|+|++.+||
T Consensus       131 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~  210 (345)
T 3fm0_A          131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA  210 (345)
T ss_dssp             EEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence            9999875   4567788899999999999999999999999999999998652 24578899999999999999999999


Q ss_pred             EEeCCCcEEEEecccccCCCC------CCcccceEEeeC-CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          640 SCSDDCTAYVFHGMVYSDLNQ------NPLIVPLEILRG-HTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       640 Sgs~Dg~I~Vwd~~~~~Dl~~------~~~~~pl~~l~g-h~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +|+.||+|+||+.........      .+...++..+.+ |...    |.+++|+|++..|++++.|++|++|++
T Consensus       211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~v~~~~~~~~l~s~~~d~~i~vw~~  281 (345)
T 3fm0_A          211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT----IYDIAWCQLTGALATACGDDAIRVFQE  281 (345)
T ss_dssp             EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC----EEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred             EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc----EEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence            999999999997643221110      112234555666 6666    999999999999999999999999973

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.8e-32  Score=300.30  Aligned_cols=290  Identities=14%  Similarity=0.179  Sum_probs=252.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeec
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVE  465 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~  465 (707)
                      .++++|+.||+|+|||+.+++++..+.. .+.|.+++|+++   .+++++.|+.|++|++.++..  .+..+...+.++.
T Consensus       130 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  206 (445)
T 2ovr_B          130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH  206 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCC---EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEE
Confidence            5899999999999999999999998886 889999999843   699999999999999988754  3445667777776


Q ss_pred             cc---ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCC
Q 005235          466 TP---TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHG  540 (707)
Q Consensus       466 ~~---~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~  540 (707)
                      +.   +++++.++.+.+|+....... .+.+|...|.+++|  +|.+|++++.|+   .|++||+.++... ..+ .|..
T Consensus       207 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~iwd~~~~~~~-~~~~~~~~  280 (445)
T 2ovr_B          207 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF---MVKVWDPETETCL-HTLQGHTN  280 (445)
T ss_dssp             EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS---CEEEEEGGGTEEE-EEECCCSS
T ss_pred             ecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC---EEEEEECCCCcEe-EEecCCCC
Confidence            65   888999999999999866543 46789999999999  789999999988   9999999998877 777 8899


Q ss_pred             CeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe
Q 005235          541 LPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL  619 (707)
Q Consensus       541 ~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l  619 (707)
                      .|.+++|  ++.++++++ |+.|++||+.+++++..+.+|...+.++.++  +.+|++|+.||.|++||+.++ .++..+
T Consensus       281 ~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~-~~~~~~  355 (445)
T 2ovr_B          281 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG-QCLQTL  355 (445)
T ss_dssp             CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred             ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC-cEEEEE
Confidence            9999999  788899988 9999999999999999999999999988875  679999999999999999877 678888


Q ss_pred             ec---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe-----eCCCCCCCCCeeEEEEcCCCC
Q 005235          620 KC---HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL-----RGHTSSNGRGVMDCKFHPRQP  691 (707)
Q Consensus       620 ~~---h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l-----~gh~~~~~~gV~~l~fspdg~  691 (707)
                      ..   |...|++++|+  +.+|++|+.||.|+||++      .++..   +..+     .+|...    |.+++|+|++.
T Consensus       356 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~------~~~~~---~~~~~~~~~~~~~~~----v~~~~~s~~~~  420 (445)
T 2ovr_B          356 QGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL------KTGEF---IRNLVTLESGGSGGV----VWRIRASNTKL  420 (445)
T ss_dssp             CSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET------TTCCE---EEEEEECTTGGGTCE----EEEEEECSSEE
T ss_pred             ccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC------CCCce---eeeeeccccCCCCce----EEEEEecCCEE
Confidence            76   88899999996  579999999999999954      44443   4444     356665    99999999999


Q ss_pred             EEEEEeCCCc----EEEEeC
Q 005235          692 WLFTAGADSV----IRLYCH  707 (707)
Q Consensus       692 ~L~s~g~Dg~----IrlWdl  707 (707)
                      +|++|+.||+    |.+||+
T Consensus       421 ~la~~~~dg~~~~~l~v~df  440 (445)
T 2ovr_B          421 VCAVGSRNGTEETKLLVLDF  440 (445)
T ss_dssp             EEEEECSSSSSCCEEEEEEC
T ss_pred             EEEEcccCCCCccEEEEEEC
Confidence            9999999998    999986

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-34  Score=322.68  Aligned_cols=302  Identities=10%  Similarity=0.033  Sum_probs=221.6

Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCCCeEE----EEEec-CCcEEEEEEccCC-----CccEEEEEeCCeEEEEECCCCCc--
Q 005235          385 PVACYLEYKGSTDGTVRIWEVESGRCL----RVLEI-GEAIQYVAWNPLP-----ELPVLAVSVGQDVLILNTGLGNE--  452 (707)
Q Consensus       385 p~~~~~l~sgs~DgtVrIWd~~tg~~l----~~l~~-~~~V~~v~~spdg-----~~~lla~s~d~~V~lwd~~~~~~--  452 (707)
                      +....++++|+.|++|+||++.++++.    .++.+ .+.|.+|+|+|++     ...|++++.|++|+||++..+..  
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~  249 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV  249 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence            455668899999999999999887642    33444 6889999999971     13677788999999999976632  


Q ss_pred             -----------hhcccccceeeeccc----ccccCCCCcEEEEecCCcc-c-eEEeccCCCeEEE--EEcCCC-CEEEEE
Q 005235          453 -----------EEQRRVKDLLHVETP----TAPDDNMASIVSWLQHDKL-D-GIRLRHFKMVSSV--EWHRRG-DYLSTV  512 (707)
Q Consensus       453 -----------~~~~~~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~-~-~~~~~h~~~V~~v--~~sp~g-~~lat~  512 (707)
                                 .+..+...+.++.|.    +++++.|++|++|++.... . ..+.+|...|.+|  +|+++| .+||++
T Consensus       250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          250 HVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             SEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             ccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence                       234466777788775    8999999999999998543 2 3467899999999  568888 899999


Q ss_pred             eCCCCccEEEEEECCCCceeeeee-ccC--CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Q 005235          513 MPAGESRAIFMHQLSKKLSHRIPF-KLH--GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAI  588 (707)
Q Consensus       513 s~dg~~~~V~Iwdl~~~~~~~~~~-~~~--~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~  588 (707)
                      +.|+   +|+|||+++.... ..+ .+.  ..|.+++|+|++..|++++ |++|++||++++.++.++.+|...|++|+|
T Consensus       330 S~D~---tvklWD~~~~~~~-~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~  405 (524)
T 2j04_B          330 AVDG---YFYIFNPKDIATT-KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGV  405 (524)
T ss_dssp             ETTS---EEEEECGGGHHHH-CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEEC
T ss_pred             ccCC---eEEEEECCCCCcc-cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEe
Confidence            9999   9999999887765 555 443  3588999999999998887 899999999999888889999999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCCcceEEeec-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCc
Q 005235          589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC-----HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPL  663 (707)
Q Consensus       589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-----h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~  663 (707)
                      +|+|.+|++|+.||+|++||+...  .+..+..     +...|.+++|+|++..+. ..++  +.+|..    . .++  
T Consensus       406 Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~----~-~~g--  473 (524)
T 2j04_B          406 SRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPL----T-VND--  473 (524)
T ss_dssp             CSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC------------
T ss_pred             CCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceeccc----c-cCC--
Confidence            999999999999999999998643  2222211     122578999999998552 2222  223311    1 011  


Q ss_pred             ccceEEeeCCCCCCCCCeeEEEEcCCCC---EEEEEeCCCcEEEEeC
Q 005235          664 IVPLEILRGHTSSNGRGVMDCKFHPRQP---WLFTAGADSVIRLYCH  707 (707)
Q Consensus       664 ~~pl~~l~gh~~~~~~gV~~l~fspdg~---~L~s~g~Dg~IrlWdl  707 (707)
                       ..+..+.+|...    |.+|+|+|+++   +||+|+.||+|+||+|
T Consensus       474 -~~~~~l~gh~~~----V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          474 -VSKAKIDAHGIN----ITCTKWNETSAGGKCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             ---------CCCS----CCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred             -cceeeecCCCce----EEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence             236788999887    99999999965   9999999999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.9e-32  Score=284.12  Aligned_cols=279  Identities=18%  Similarity=0.255  Sum_probs=229.3

Q ss_pred             CCCCCCCCcc-----ccCCCCCccCChhh---hhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCc
Q 005235          287 PKPKLPGHEE-----SYNPSLEYIPTQEE---LNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPR  358 (707)
Q Consensus       287 pk~~lpgh~~-----synP~ge~L~s~~~---~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr  358 (707)
                      ++..+.||..     +|+|++++|++.+.   ++.|.           .......+.+.++       ...+..+.|+|+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~-----------~~~~~~~~~~~~h-------~~~v~~~~~~~~   76 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----------AYDGKFEKTISGH-------KLGISDVAWSSD   76 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE-----------TTTCCEEEEECCC-------SSCEEEEEECTT
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEe-----------CCCcccchhhccC-------CCceEEEEEcCC
Confidence            3456788876     59999999998554   34443           2233333333333       334467777765


Q ss_pred             cccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEE
Q 005235          359 VRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVS  437 (707)
Q Consensus       359 ~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s  437 (707)
                      .                             .++++|+.||+|+|||+.+++++..+.. ...|.+++|+|++ ..+++++
T Consensus        77 ~-----------------------------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~  126 (312)
T 4ery_A           77 S-----------------------------NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS  126 (312)
T ss_dssp             S-----------------------------SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEE
T ss_pred             C-----------------------------CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEe
Confidence            4                             4899999999999999999999999887 7889999999999 4788888


Q ss_pred             eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC
Q 005235          438 VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE  517 (707)
Q Consensus       438 ~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~  517 (707)
                      .|+.|++||+.++..                                  ...+..|...|.+++|+|+|.+|++++.|+ 
T Consensus       127 ~d~~i~iwd~~~~~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-  171 (312)
T 4ery_A          127 FDESVRIWDVKTGKC----------------------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-  171 (312)
T ss_dssp             TTSCEEEEETTTCCE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred             CCCcEEEEECCCCEE----------------------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-
Confidence            999999999876421                                  113457889999999999999999999998 


Q ss_pred             ccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCe---EEEEEcCC
Q 005235          518 SRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEV---SSIAIHPA  591 (707)
Q Consensus       518 ~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I---~sl~~spd  591 (707)
                        .|++||+.++... ..+  .+...+.+++|+|++.+|++++ |+.|++||+.+++++..+.+|...+   ......++
T Consensus       172 --~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
T 4ery_A          172 --LCRIWDTASGQCL-KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG  248 (312)
T ss_dssp             --CEEEEETTTCCEE-EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS
T ss_pred             --cEEEEECCCCcee-eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC
Confidence              9999999998876 555  5677899999999999999998 9999999999999999998876543   23334477


Q ss_pred             CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEec
Q 005235          592 GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS--DDCTAYVFHG  652 (707)
Q Consensus       592 g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~  652 (707)
                      +.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++++|++++  .|++|+||+.
T Consensus       249 ~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          249 GKWIVSGSEDNLVYIWNLQTK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             SCEEEECCTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             CcEEEEECCCCEEEEEECCCc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            899999999999999999877 78899999999999999999999999997  6999999953

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-33  Score=304.66  Aligned_cols=280  Identities=13%  Similarity=0.186  Sum_probs=214.1

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCC--eEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          386 VACYLEYKGSTDGTVRIWEVESG--RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg--~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      .++.++++|+.||+|+||++.++  +++..+.. .+.|.+++|+|++ ..|++++.|+.|++|++.++...         
T Consensus        21 ~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~---------   90 (377)
T 3dwl_C           21 SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGTW---------   90 (377)
T ss_dssp             SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------CC---------
T ss_pred             CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCce---------
Confidence            34569999999999999999998  67777765 7899999999998 47888999999999998765300         


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce---eeeee-c-
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS---HRIPF-K-  537 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~---~~~~~-~-  537 (707)
                                            .....+..|...|.+++|+|++++|++++.|+   .|++|++.....   . ..+ . 
T Consensus        91 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~-~~~~~~  144 (377)
T 3dwl_C           91 ----------------------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR---VISVCYFEQENDWWVS-KHLKRP  144 (377)
T ss_dssp             ----------------------CCEEECCCCSSCEEEEECCTTSSCCEEEESSS---CEEECCC-----CCCC-EEECSS
T ss_pred             ----------------------eeeeEecccCCceEEEEECCCCCEEEEEecCC---eEEEEEECCcccceee-eEeecc
Confidence                                  01113457899999999999999999999988   999999998763   3 555 5 


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC------------------CCeEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 005235          538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL------------------KQRLIKKLETGLKEVSSIAIHPAGDNLIVG  598 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~------------------~~~~~~~l~~~~~~I~sl~~spdg~~L~sG  598 (707)
                      |.+.|.+++|+|++.+|++++ |+.|++||+.                  .++++..+ .|...|.+++|+|+|.+|++|
T Consensus       145 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~  223 (377)
T 3dwl_C          145 LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYA  223 (377)
T ss_dssp             CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEE
T ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEE
Confidence            899999999999999999998 8999999985                  35566677 888999999999999999999


Q ss_pred             ECCCcEEEEECCCCCcc---eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc-----CCCCCC--c-----
Q 005235          599 SREGKLCWFDMDLSSKP---YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYS-----DLNQNP--L-----  663 (707)
Q Consensus       599 s~Dg~I~vwDl~~~~~~---~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~-----Dl~~~~--~-----  663 (707)
                      +.||.|++||+.++..+   +..+.+|...|++++|+|++.+|++|++++.+ +|+.....     .+....  .     
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (377)
T 3dwl_C          224 GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHT  302 (377)
T ss_dssp             ETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSS
T ss_pred             eCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccc
Confidence            99999999999987431   67888999999999999999999999877766 66543110     000000  0     


Q ss_pred             ---------ccce------E----------------EeeCCCCCCCCCeeEEEEcCCCC----EEEEEeCCCcEEEEeC
Q 005235          664 ---------IVPL------E----------------ILRGHTSSNGRGVMDCKFHPRQP----WLFTAGADSVIRLYCH  707 (707)
Q Consensus       664 ---------~~pl------~----------------~l~gh~~~~~~gV~~l~fspdg~----~L~s~g~Dg~IrlWdl  707 (707)
                               ...+      .                ...+|...    |+++++.+...    .|+|||.||+|+||++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~----i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          303 GNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNM----IATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SSBCCCCCC-------------------------CCCSSSCSSC----EEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccccccchhhccccccccccCccccce----eEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                     0000      1                11237776    99999776543    6999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.5e-32  Score=283.04  Aligned_cols=245  Identities=16%  Similarity=0.178  Sum_probs=200.5

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|.+++|+|+| ..|++++.|++|+||++.....                                .....+.+|.+.
T Consensus         9 ~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~--------------------------------~~~~~l~gH~~~   55 (297)
T 2pm7_B            9 NEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETH--------------------------------KLIDTLTGHEGP   55 (297)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCB--------------------------------CCCEEECCCSSC
T ss_pred             cCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCc--------------------------------EEEEEEccccCC
Confidence            6789999999999 4788889999999999754211                                112245689999


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCCcee-eeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCC
Q 005235          497 VSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKKLSH-RIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLK  569 (707)
Q Consensus       497 V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~~~~-~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~  569 (707)
                      |.+++|++  +|++|++++.|+   +|+|||+.++... ...+ .|...|.+++|+|+  +.+|++++ |++|++||+.+
T Consensus        56 V~~v~~s~~~~g~~l~s~s~D~---~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           56 VWRVDWAHPKFGTILASCSYDG---KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             EEEEEECCGGGCSEEEEEETTT---EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             eEEEEecCCCcCCEEEEEcCCC---EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence            99999986  489999999998   9999999877422 1445 78899999999997  88999988 99999999987


Q ss_pred             Ce--EEEEEeCCCCCeEEEEEcCC-------------CCEEEEEECCCcEEEEECCCCCc---ceEEeecCCCCEEEEEE
Q 005235          570 QR--LIKKLETGLKEVSSIAIHPA-------------GDNLIVGSREGKLCWFDMDLSSK---PYRVLKCHPKDITNVAF  631 (707)
Q Consensus       570 ~~--~~~~l~~~~~~I~sl~~spd-------------g~~L~sGs~Dg~I~vwDl~~~~~---~~~~l~~h~~~I~~vaf  631 (707)
                      +.  ....+.+|...|.+++|+|+             +.+|++|+.|+.|++||++.+..   +...+.+|...|++|+|
T Consensus       133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~  212 (297)
T 2pm7_B          133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  212 (297)
T ss_dssp             SSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             CCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE
Confidence            53  24567889999999999997             57999999999999999987632   55678899999999999


Q ss_pred             cCCC---CEEEEEeCCCcEEEEecccccCCCCCCcccceEEe--eCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          632 HRSY---PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL--RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       632 spdg---~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l--~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      +|++   .+||+|+.|++|+||+....    ..+.  ....+  .+|...    |.+++|+|++++|++++.||+|+||+
T Consensus       213 sp~~~~~~~las~s~D~~v~iWd~~~~----~~~~--~~~~~~~~~~~~~----v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          213 SPTVLLRSYMASVSQDRTCIIWTQDNE----QGPW--KKTLLKEEKFPDV----LWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             CCCCSSSEEEEEEETTSCEEEEEESST----TSCC--EEEESSSSCCSSC----EEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             CCCCCCceEEEEEECCCcEEEEEeCCC----CCcc--ceeeeecccCCCc----EEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            9985   79999999999999965421    1111  12233  456665    99999999999999999999999997


Q ss_pred             C
Q 005235          707 H  707 (707)
Q Consensus       707 l  707 (707)
                      .
T Consensus       283 ~  283 (297)
T 2pm7_B          283 E  283 (297)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.4e-31  Score=314.94  Aligned_cols=324  Identities=14%  Similarity=0.149  Sum_probs=265.6

Q ss_pred             ccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEE
Q 005235          343 VKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQ  421 (707)
Q Consensus       343 i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~  421 (707)
                      +..|..++..+.|+|++                             .++++|+.||+|+|||+.+++++..+.. .+.|.
T Consensus         9 ~~~h~~~v~~i~~sp~~-----------------------------~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~   59 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTE-----------------------------PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVR   59 (814)
T ss_dssp             EEEECSCEEEEEECSSS-----------------------------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             eecCCCceEEEEECCCC-----------------------------CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEE
Confidence            34555666778888765                             4899999999999999999999999986 88999


Q ss_pred             EEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc-----ccccCCCCcEEEEecCCcc--ceEEec
Q 005235          422 YVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKL--DGIRLR  492 (707)
Q Consensus       422 ~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~--~~~~~~  492 (707)
                      +++|+|++ ..|++++.++.|++|++.++..  .+..+...+.++.|+     +++++.++.+.+|+.....  ...+.+
T Consensus        60 ~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  138 (814)
T 3mkq_A           60 AGKFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG  138 (814)
T ss_dssp             EEEEEGGG-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred             EEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence            99999999 4788888999999999998865  445677788888886     7889999999999998652  234678


Q ss_pred             cCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeC--CCCEEEEEe-CCeEEEEE
Q 005235          493 HFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHP--TRSIFFVST-KKNIRVYD  566 (707)
Q Consensus       493 h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fsp--d~~~l~v~s-dg~I~iwD  566 (707)
                      |...|.+++|+| ++.+|++++.|+   .|++|++...... ..+  .+...+.+++|+|  ++.+|++++ ++.|++||
T Consensus       139 ~~~~v~~~~~~p~~~~~l~~~~~dg---~v~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d  214 (814)
T 3mkq_A          139 HEHFVMCVAFNPKDPSTFASGCLDR---TVKVWSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD  214 (814)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTS---EEEEEETTCSSCS-EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred             CCCcEEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCcce-eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            999999999999 889999999988   9999999887766 555  4458999999999  999999998 89999999


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC--EEEEEeCC
Q 005235          567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP--LFASCSDD  644 (707)
Q Consensus       567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~--llaSgs~D  644 (707)
                      +.+++.+..+.+|...|++++|+|+|.+|++|+.||.|++||+.++ .+...+..|...|++++|+|++.  ++++++ +
T Consensus       215 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~  292 (814)
T 3mkq_A          215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGF-D  292 (814)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEECCSSSSEEEEEECTTCGGGEEEEEE-T
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCCCcEEEEEEccCCCceEEEEEe-C
Confidence            9999999999999999999999999999999999999999999887 78889999999999999999987  466655 5


Q ss_pred             CcEEEEecccccCCC----CC------------------------------CcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235          645 CTAYVFHGMVYSDLN----QN------------------------------PLIVPLEILRGHTSSNGRGVMDCKFHPRQ  690 (707)
Q Consensus       645 g~I~Vwd~~~~~Dl~----~~------------------------------~~~~pl~~l~gh~~~~~~gV~~l~fspdg  690 (707)
                      +.+.+|+........    .+                              ........+..+...    +.+++|+|+|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~spdg  368 (814)
T 3mkq_A          293 NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVF----PQSLAHSPNG  368 (814)
T ss_dssp             TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSC----CSEEEECTTS
T ss_pred             CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccC----CceeEECCCC
Confidence            567788643110000    00                              000011222334333    7899999999


Q ss_pred             CEEEEEeCCCcEEEEeC
Q 005235          691 PWLFTAGADSVIRLYCH  707 (707)
Q Consensus       691 ~~L~s~g~Dg~IrlWdl  707 (707)
                      ++|++++ ||.+.+|++
T Consensus       369 ~~la~~~-~~~~~i~~~  384 (814)
T 3mkq_A          369 RFVTVVG-DGEYVIYTA  384 (814)
T ss_dssp             SEEEEEE-TTEEEEEET
T ss_pred             CEEEEec-CCEEEEEEC
Confidence            9998888 889999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.6e-31  Score=292.66  Aligned_cols=263  Identities=17%  Similarity=0.234  Sum_probs=221.7

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      ++|++|. |++|+|||+.+|+++..+..   ...|++|+|+|+| ..|++++.|+.|+||++.++..             
T Consensus       117 n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~-------------  181 (420)
T 4gga_A          117 NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKR-------------  181 (420)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE-------------
T ss_pred             CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcE-------------
Confidence            4777765 89999999999999988875   5679999999999 4788889999999999876521             


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEE
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVS  544 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~  544 (707)
                                           .....+|...+.+++|+  +.+|++++.|+   .+.+|+..........+ .|...+..
T Consensus       182 ---------------------~~~~~~h~~~v~~~s~~--~~~l~sgs~d~---~i~~~d~~~~~~~~~~~~~h~~~~~~  235 (420)
T 4gga_A          182 ---------------------LRNMTSHSARVGSLSWN--SYILSSGSRSG---HIHHHDVRVAEHHVATLSGHSQEVCG  235 (420)
T ss_dssp             ---------------------EEEECCCSSCEEEEEEE--TTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred             ---------------------EEEEeCCCCceEEEeeC--CCEEEEEeCCC---ceeEeeecccceeeEEecccccceee
Confidence                                 12355789999988875  68999999998   99999998876654566 89999999


Q ss_pred             EEEeCCCCEEEEEe-CCeEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCCC-EEEE--EECCCcEEEEECCCCCcce
Q 005235          545 SVFHPTRSIFFVST-KKNIRVYDLLKQR----LIKKLETGLKEVSSIAIHPAGD-NLIV--GSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       545 v~fspd~~~l~v~s-dg~I~iwDl~~~~----~~~~l~~~~~~I~sl~~spdg~-~L~s--Gs~Dg~I~vwDl~~~~~~~  616 (707)
                      +.|+|++.++++++ |+.|++|++.+++    .+.....|...|.+++|+|.+. .+++  |+.|+.|++||+.++ .+.
T Consensus       236 ~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~  314 (420)
T 4gga_A          236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACL  314 (420)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEE
T ss_pred             eeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccc
Confidence            99999999999998 9999999998763    4566778889999999999764 5554  457999999999987 677


Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235          617 RVLKCHPKDITNVAFHRSYPLFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF  694 (707)
Q Consensus       617 ~~l~~h~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~  694 (707)
                      ..+..| ..+.++.|+|++..+++++  .||.|+||++      .+..   ++..+.||...    |++++|+|+|.+|+
T Consensus       315 ~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~------~~~~---~v~~l~gH~~~----V~~l~~spdg~~l~  380 (420)
T 4gga_A          315 SAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKY------PTMA---KVAELKGHTSR----VLSLTMSPDGATVA  380 (420)
T ss_dssp             EEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEET------TTCC---EEEEECCCSSC----EEEEEECTTSSCEE
T ss_pred             eeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEEC------CCCc---EEEEEcCCCCC----EEEEEEcCCCCEEE
Confidence            777755 5689999999999887765  7999999954      3433   48899999988    99999999999999


Q ss_pred             EEeCCCcEEEEeC
Q 005235          695 TAGADSVIRLYCH  707 (707)
Q Consensus       695 s~g~Dg~IrlWdl  707 (707)
                      |||.||+|+||++
T Consensus       381 S~s~D~tvriWdv  393 (420)
T 4gga_A          381 SAAADETLRLWRC  393 (420)
T ss_dssp             EEETTTEEEEECC
T ss_pred             EEecCCeEEEEEC
Confidence            9999999999986

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.8e-31  Score=294.04  Aligned_cols=290  Identities=12%  Similarity=0.142  Sum_probs=242.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeec
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVE  465 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~  465 (707)
                      .++++|+.||+|++||+.+++++..+.. .+.|.+++|+|++  .+++++.|++|++||+.++..  .+..+...+.++.
T Consensus       133 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~  210 (464)
T 3v7d_B          133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD  210 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence            4899999999999999999999999986 8999999999998  799999999999999998754  3445667776665


Q ss_pred             cc-------ccccCCCCcEEEEecCCcc------------------------ceEEeccCCCeEEEEEcCCCCEEEEEeC
Q 005235          466 TP-------TAPDDNMASIVSWLQHDKL------------------------DGIRLRHFKMVSSVEWHRRGDYLSTVMP  514 (707)
Q Consensus       466 ~~-------~~~~~~d~~i~iW~~~~~~------------------------~~~~~~h~~~V~~v~~sp~g~~lat~s~  514 (707)
                      +.       +++++.++.+++|+.....                        .....+|...|.++  ++++++|++++.
T Consensus       211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~  288 (464)
T 3v7d_B          211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY  288 (464)
T ss_dssp             EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred             EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence            53       7889999999999987543                        22356788888877  567999999999


Q ss_pred             CCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 005235          515 AGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG  592 (707)
Q Consensus       515 dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg  592 (707)
                      |+   .|++||+.++... ..+ .|...|.+++|+|++.+|++++ |+.|++||+.+++++.++.+|...|.+++|+  +
T Consensus       289 d~---~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~  362 (464)
T 3v7d_B          289 DN---TLIVWDVAQMKCL-YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--D  362 (464)
T ss_dssp             TS---CEEEEETTTTEEE-EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--S
T ss_pred             CC---eEEEEECCCCcEE-EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--C
Confidence            98   9999999998887 777 8999999999999999999998 8999999999999999999999999999997  5


Q ss_pred             CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE-ee
Q 005235          593 DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI-LR  671 (707)
Q Consensus       593 ~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~-l~  671 (707)
                      .+|++|+.||.|++||+.+.. ....+ .|...+..++|++++.+|++|+ ||.|+|||+      .++..   +.. +.
T Consensus       363 ~~l~s~s~dg~v~vwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~------~~g~~---~~~~~~  430 (464)
T 3v7d_B          363 KFLVSAAADGSIRGWDANDYS-RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNL------RSGKL---VHANIL  430 (464)
T ss_dssp             SEEEEEETTSEEEEEETTTCC-EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEET------TTCCE---EESCTT
T ss_pred             CEEEEEeCCCcEEEEECCCCc-eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEEC------CCCcE---Eehhhc
Confidence            899999999999999998763 33333 3667788899999999999998 899999954      44433   332 45


Q ss_pred             CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          672 GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       672 gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      +|...    |.+++|+ ....+++++.||.+.+|
T Consensus       431 ~~~~~----v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          431 KDADQ----IWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             TTCSE----EEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             cCCCc----EEEEEec-CCEEEEEEEeCCeEEEE
Confidence            66665    9999997 33455566677766655

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-32  Score=292.75  Aligned_cols=291  Identities=14%  Similarity=0.127  Sum_probs=233.8

Q ss_pred             CcEEEEeCCCCeEE-EEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC----CCCCc--------hhcc--------
Q 005235          398 GTVRIWEVESGRCL-RVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT----GLGNE--------EEQR--------  456 (707)
Q Consensus       398 gtVrIWd~~tg~~l-~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~----~~~~~--------~~~~--------  456 (707)
                      ..+.+|++...... ....+.+.|.+++|+|++...|++++.++.|++|++    .++..        .+..        
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS  104 (425)
T ss_dssp             ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred             cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence            34667887655433 333347899999999999326778888999999999    77651        1111        


Q ss_pred             --cccceeeeccc-----ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235          457 --RVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK  529 (707)
Q Consensus       457 --~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~  529 (707)
                        +...+.++.|+     +++++.++.+.+|+..+.....+..|...|.+++|+|++.+|++++.++   .|++|++.++
T Consensus       105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~  181 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVEN---VTILWNVISG  181 (425)
T ss_dssp             ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTC---CEEEEETTTT
T ss_pred             cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCC---eEEEEECCCC
Confidence              35577777776     7888999999999966666666788999999999999999999999988   9999999988


Q ss_pred             ceeeeee-ccCCC---------------eEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 005235          530 LSHRIPF-KLHGL---------------PVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD  593 (707)
Q Consensus       530 ~~~~~~~-~~~~~---------------V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~  593 (707)
                      ... ..+ .+...               +.+++|+|++.+++.+.++.|++||+.+++.+..+..|...|.+++|+|++.
T Consensus       182 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  260 (425)
T 1r5m_A          182 TVM-QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK  260 (425)
T ss_dssp             EEE-EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred             cEE-EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence            776 666 44444               8999999987644444499999999999998889999999999999999999


Q ss_pred             EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC
Q 005235          594 NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH  673 (707)
Q Consensus       594 ~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh  673 (707)
                      +|++|+.||.|++||+..+ .+...+..|...|.+++|+|++ +|++++.||.|++|++      .+..   ++..+.+|
T Consensus       261 ~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~------~~~~---~~~~~~~~  329 (425)
T 1r5m_A          261 LLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL------KQNT---LLALSIVD  329 (425)
T ss_dssp             EEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET------TTTE---EEEEEECT
T ss_pred             EEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC------CCCc---EeEecccC
Confidence            9999999999999999876 7788899999999999999999 9999999999999954      3333   47778888


Q ss_pred             CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          674 TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       674 ~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ...    |.+++|+|++.+|++++.||.|++|++
T Consensus       330 ~~~----i~~~~~s~~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          330 GVP----IFAGRISQDGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             TCC----EEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             Ccc----EEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            877    999999999999999999999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-31  Score=281.18  Aligned_cols=257  Identities=16%  Similarity=0.145  Sum_probs=204.1

Q ss_pred             CCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC
Q 005235          406 ESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD  484 (707)
Q Consensus       406 ~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~  484 (707)
                      .+.+++.++.. .+.|.+++|+|+   .|++++.|++|++|++..+....                              
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~------------------------------   48 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTL------------------------------   48 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEE------------------------------
T ss_pred             cccccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEE------------------------------
Confidence            34567777776 889999999987   58899999999999986532100                              


Q ss_pred             ccceEE-ec-cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC-------ceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235          485 KLDGIR-LR-HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK-------LSHRIPF-KLHGLPVSSVFHPTRSIF  554 (707)
Q Consensus       485 ~~~~~~-~~-h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~-------~~~~~~~-~~~~~V~~v~fspd~~~l  554 (707)
                        ...+ .. |...|.+++|+|+|.+|++++.|+   .|+||++...       ... ..+ .|.+.|.+++|+|++.+|
T Consensus        49 --~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~---~v~iw~~~~~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~g~~l  122 (330)
T 2hes_X           49 --IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS---TVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYL  122 (330)
T ss_dssp             --EEEECTTCCCSCEEEEEECTTSSEEEEEETTS---CEEEEEC-------CCCEEE-EEEC----CEEEEEECTTSCEE
T ss_pred             --EEEEecCCccCCEEEEEECCCCCEEEEEeCCC---cEEEEEcccCcCccccceeE-EEEcCCCCcEEEEEECCCCCEE
Confidence              0112 23 899999999999999999999998   9999998532       223 456 899999999999999999


Q ss_pred             EEEe-CCeEEEEECCC----CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEE
Q 005235          555 FVST-KKNIRVYDLLK----QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITN  628 (707)
Q Consensus       555 ~v~s-dg~I~iwDl~~----~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~  628 (707)
                      ++++ |++|++||+..    .+++..+.+|...|.+++|+|++.+|++|+.|+.|++||+..+. .++..+.+|...|.+
T Consensus       123 as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~  202 (330)
T 2hes_X          123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS  202 (330)
T ss_dssp             EEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred             EEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence            9998 99999999943    36778899999999999999999999999999999999987542 567889999999999


Q ss_pred             EEEcCC--CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC-CCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          629 VAFHRS--YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG-HTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       629 vafspd--g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      ++|+|+  +.+|++|+.|++|+||++....... .....++..+.+ |...    |.+++|++++ +|++++.||+|+||
T Consensus       203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~-~~~~~~~~~~~~~h~~~----v~~v~~s~~~-~l~s~~~dg~v~iw  276 (330)
T 2hes_X          203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD-QQEWVCEAILPDVHKRQ----VYNVAWGFNG-LIASVGADGVLAVY  276 (330)
T ss_dssp             EEECCSSSSCEEEEEETTSCEEEEEEEEECTTS-CEEEEEEEECCSCCSSC----EEEEEECTTS-CEEEEETTSCEEEE
T ss_pred             EEecCCCCeeEEEEEeCCCeEEEEEecCCCccc-cceeEEeeecccccccc----eEEEEEcCCC-EEEEEeCCCEEEEE
Confidence            999998  6799999999999999875432111 111123455555 7776    9999999765 89999999999999


Q ss_pred             eC
Q 005235          706 CH  707 (707)
Q Consensus       706 dl  707 (707)
                      ++
T Consensus       277 ~~  278 (330)
T 2hes_X          277 EE  278 (330)
T ss_dssp             EE
T ss_pred             Ec
Confidence            73

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3e-32  Score=296.53  Aligned_cols=263  Identities=17%  Similarity=0.214  Sum_probs=219.0

Q ss_pred             CcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCc
Q 005235          398 GTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMAS  476 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~  476 (707)
                      .++..|+..+..+.+++.+ .+.|++++|+|++ ..|++++.|++|+|||+.++..                        
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~~~------------------------  100 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQK------------------------  100 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEE------------------------
T ss_pred             ccccccccceeEEeecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcc------------------------
Confidence            3455677778888888887 8899999999999 4799999999999999766521                        


Q ss_pred             EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce------eeeee-ccCCCeEEEEEeC
Q 005235          477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS------HRIPF-KLHGLPVSSVFHP  549 (707)
Q Consensus       477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~------~~~~~-~~~~~V~~v~fsp  549 (707)
                                ...+..|...|.+++|+|+|++|++++.|+   .|+||++.....      ....+ +|.+.|.+++|+|
T Consensus       101 ----------~~~~~~h~~~v~~~~~s~~g~~las~~~d~---~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~  167 (380)
T 3iz6_a          101 ----------THAIKLHCPWVMECAFAPNGQSVACGGLDS---ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP  167 (380)
T ss_dssp             ----------EEEEECCCTTCCCCEECTTSSEEEECCSSS---CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS
T ss_pred             ----------ceEEecCCCCEEEEEECCCCCEEEEeeCCC---cEEEEECCCCccccCCccceeeccCCCcceEEEEEec
Confidence                      123557899999999999999999999998   999999975321      11345 8899999999999


Q ss_pred             CC-CEEEEEe-CCeEEEEECCCCeEEEEE-----eCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235          550 TR-SIFFVST-KKNIRVYDLLKQRLIKKL-----ETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       550 d~-~~l~v~s-dg~I~iwDl~~~~~~~~l-----~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                      ++ ..|++|+ |++|++||+.+++.+..+     .+|...|.+++|+| ++.+|++|+.|+.|++||++....++..+.+
T Consensus       168 ~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~  247 (380)
T 3iz6_a          168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG  247 (380)
T ss_dssp             SSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC
T ss_pred             CCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC
Confidence            74 4678887 999999999999988887     57888899999987 8899999999999999999866678899999


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCC---CCCCeeEEEEcCCCCEEEEEeC
Q 005235          622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS---NGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~---~~~gV~~l~fspdg~~L~s~g~  698 (707)
                      |...|++++|+|++.+|++|+.||+|+|||+.      ++..   +..+..+...   ....|.+++|+|+|.+|++|+.
T Consensus       248 h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~------~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  318 (380)
T 3iz6_a          248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR------TGHQ---LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS  318 (380)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSCEEEEETT------TTEE---EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred             cCCCeEEEEEecCCCeEEEEcCCCeEEEEECC------CCcE---EEEecccccccccccCceEEEEECCCCCEEEEEEC
Confidence            99999999999999999999999999999654      3322   4445443221   1123899999999999999999


Q ss_pred             CCcEEEEeC
Q 005235          699 DSVIRLYCH  707 (707)
Q Consensus       699 Dg~IrlWdl  707 (707)
                      ||.|++||+
T Consensus       319 dg~i~vwd~  327 (380)
T 3iz6_a          319 NGDCYVWDT  327 (380)
T ss_dssp             TSCEEEEET
T ss_pred             CCCEEEEEC
Confidence            999999984

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2e-30  Score=271.62  Aligned_cols=262  Identities=17%  Similarity=0.212  Sum_probs=216.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      +|++| .|++|+|||+.+|++++.+..   ...|++|+|+|++ ..+++++.|++|++|++.++..              
T Consensus        38 ~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~--------------  101 (318)
T 4ggc_A           38 VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKR--------------  101 (318)
T ss_dssp             EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE--------------
T ss_pred             EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCcee--------------
Confidence            66665 599999999999999998875   6679999999999 4788899999999999876522              


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS  545 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v  545 (707)
                                          .....+|...+.++.+  ++..+++++.++   .+.+|+..........+ .|...+.++
T Consensus       102 --------------------~~~~~~h~~~~~~~~~--~~~~l~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (318)
T 4ggc_A          102 --------------------LRNMTSHSARVGSLSW--NSYILSSGSRSG---HIHHHDVRVAEHHVATLSGHSQEVCGL  156 (318)
T ss_dssp             --------------------EEEEECCSSCEEEEEE--ETTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             --------------------EEEecCccceEEEeec--CCCEEEEEecCC---ceEeeecCCCceeEEEEcCccCceEEE
Confidence                                1134578777776554  578999999988   99999998876653556 899999999


Q ss_pred             EEeCCCCEEEEEe-CCeEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCCCEE---EEEECCCcEEEEECCCCCcceE
Q 005235          546 VFHPTRSIFFVST-KKNIRVYDLLKQR----LIKKLETGLKEVSSIAIHPAGDNL---IVGSREGKLCWFDMDLSSKPYR  617 (707)
Q Consensus       546 ~fspd~~~l~v~s-dg~I~iwDl~~~~----~~~~l~~~~~~I~sl~~spdg~~L---~sGs~Dg~I~vwDl~~~~~~~~  617 (707)
                      .|++++.+|++++ |+.|++||+.+++    .......+...|.+++++|.+..+   ++|+.++.|++||.... ....
T Consensus       157 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~  235 (318)
T 4ggc_A          157 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLS  235 (318)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEE
T ss_pred             EEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-cccc
Confidence            9999999999998 8999999998764    345566677889999999987543   45677899999999876 3333


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235          618 VLKCHPKDITNVAFHRSYPLFASCS--DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT  695 (707)
Q Consensus       618 ~l~~h~~~I~~vafspdg~llaSgs--~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s  695 (707)
                       ...+...+..+.|+|.+..+++++  .|++|+|||+      .+..   ++..+.+|...    |++++|+|++++|+|
T Consensus       236 -~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~------~~~~---~~~~l~gH~~~----V~~l~~spdg~~l~S  301 (318)
T 4ggc_A          236 -AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY------PTMA---KVAELKGHTSR----VLSLTMSPDGATVAS  301 (318)
T ss_dssp             -EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET------TTCC---EEEEECCCSSC----EEEEEECTTSSCEEE
T ss_pred             -cccceeeeeeeeecccccceEEEEEcCCCEEEEEEC------CCCc---EEEEEcCCCCC----EEEEEEcCCCCEEEE
Confidence             345778899999999999777655  7999999954      3443   48899999988    999999999999999


Q ss_pred             EeCCCcEEEEeC
Q 005235          696 AGADSVIRLYCH  707 (707)
Q Consensus       696 ~g~Dg~IrlWdl  707 (707)
                      ||.||+|+|||+
T Consensus       302 ~s~D~~v~iWd~  313 (318)
T 4ggc_A          302 AAADETLRLWRC  313 (318)
T ss_dssp             EETTTEEEEECC
T ss_pred             EecCCeEEEEEC
Confidence            999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-30  Score=274.63  Aligned_cols=269  Identities=15%  Similarity=0.163  Sum_probs=221.0

Q ss_pred             cEEEEEeCCCcEEEEeCCC-CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVES-GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~t-g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .+++.+..++.+.+|.... .+.+..+.+.+.|.+++|+|++  .+++++.++.|++|++.++....             
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~dg~i~iw~~~~~~~~~-------------   86 (337)
T 1gxr_A           22 QMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPT--RHVYTGGKGCVKVWDISHPGNKS-------------   86 (337)
T ss_dssp             CEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSS--SEEEEECBSEEEEEETTSTTCCS-------------
T ss_pred             CEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCC--cEEEEcCCCeEEEEECCCCCcee-------------
Confidence            4676666666666665544 3455556668999999999999  35555559999999987653210             


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSS  545 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v  545 (707)
                              .+...        ....|...|.+++|+|++++|++++.++   .|++|++.+..... ..+ .+...|.++
T Consensus        87 --------~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~i~~~  147 (337)
T 1gxr_A           87 --------PVSQL--------DCLNRDNYIRSCKLLPDGCTLIVGGEAS---TLSIWDLAAPTPRIKAELTSSAPACYAL  147 (337)
T ss_dssp             --------CSEEE--------ECSCTTSBEEEEEECTTSSEEEEEESSS---EEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred             --------eeecc--------cccCCCCcEEEEEEcCCCCEEEEEcCCC---cEEEEECCCCCcceeeecccCCCceEEE
Confidence                    00000        1226889999999999999999999988   99999999877321 445 788899999


Q ss_pred             EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC
Q 005235          546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK  624 (707)
Q Consensus       546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~  624 (707)
                      +|+|++.+|++++ ++.|++||+.+++.+..+..|...|.+++|+|++.+|++++.||.|++||+.++ ++...+. |..
T Consensus       148 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~-~~~  225 (337)
T 1gxr_A          148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-RQLQQHD-FTS  225 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE-CSS
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-ceEeeec-CCC
Confidence            9999999999998 899999999999999999999999999999999999999999999999999876 5666554 778


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235          625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                      .+.+++|+|++.+|++++.||.|++|+..      ...    ...+.+|...    |.+++|+|++++|++++.||.|++
T Consensus       226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~------~~~----~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~~  291 (337)
T 1gxr_A          226 QIFSLGYCPTGEWLAVGMESSNVEVLHVN------KPD----KYQLHLHESC----VLSLKFAYCGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETT------SSC----EEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECC------CCC----eEEEcCCccc----eeEEEECCCCCEEEEecCCCcEEE
Confidence            89999999999999999999999999654      332    3467788877    999999999999999999999999


Q ss_pred             EeC
Q 005235          705 YCH  707 (707)
Q Consensus       705 Wdl  707 (707)
                      |++
T Consensus       292 ~~~  294 (337)
T 1gxr_A          292 WRT  294 (337)
T ss_dssp             EET
T ss_pred             EEC
Confidence            985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-31  Score=279.19  Aligned_cols=289  Identities=17%  Similarity=0.204  Sum_probs=235.9

Q ss_pred             CCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCcccc
Q 005235          289 PKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK  361 (707)
Q Consensus       289 ~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k  361 (707)
                      ..|.||..     +|+|++.+|++.+.          +..+  |.......++.+.++...       +..+.|+|+.  
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~h~~~-------v~~~~~~~~~--   86 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSK----------DSSASVWYSLNGERLGTLDGHTGT-------IWSIDVDCFT--   86 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEES----------SSCEEEEETTTCCEEEEECCCSSC-------EEEEEECTTS--
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeC----------CCEEEEEeCCCchhhhhhhhcCCc-------EEEEEEcCCC--
Confidence            35778876     59999999998654          3333  333444455555444443       3677777654  


Q ss_pred             ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC--
Q 005235          362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG--  439 (707)
Q Consensus       362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d--  439 (707)
                                                 .++++|+.||+|+|||+.+++++..+.....|.+++|+|++. .+++++.+  
T Consensus        87 ---------------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~  138 (369)
T 3zwl_B           87 ---------------------------KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGN-YFLAILDNVM  138 (369)
T ss_dssp             ---------------------------SEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSS-EEEEEECCBT
T ss_pred             ---------------------------CEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCC-EEEEecCCcc
Confidence                                       489999999999999999999999999999999999999994 67777777  


Q ss_pred             ---CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC--CeEEEEEcCCCCEEEEEeC
Q 005235          440 ---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK--MVSSVEWHRRGDYLSTVMP  514 (707)
Q Consensus       440 ---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~--~V~~v~~sp~g~~lat~s~  514 (707)
                         +.|.+|++.......                     .  +.............|..  .+.+++|+|++++|++++.
T Consensus       139 ~~~g~i~~~d~~~~~~~~---------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  195 (369)
T 3zwl_B          139 KNPGSINIYEIERDSATH---------------------E--LTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK  195 (369)
T ss_dssp             TBCCEEEEEEEEECTTTC---------------------C--EEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET
T ss_pred             CCCCEEEEEEecCCccce---------------------e--ecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC
Confidence               899999976653211                     0  01111112223445666  9999999999999999999


Q ss_pred             CCCccEEEEEECCC-Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC
Q 005235          515 AGESRAIFMHQLSK-KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA  591 (707)
Q Consensus       515 dg~~~~V~Iwdl~~-~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd  591 (707)
                      ++   .|.+||+.+ .... ..+ .+...|.+++|+|++.+|++++ |+.|++||+.+++.+..+. +...+.+++|+|+
T Consensus       196 dg---~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~  270 (369)
T 3zwl_B          196 DG---KISKYDVSNNYEYV-DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPL  270 (369)
T ss_dssp             TS---EEEEEETTTTTEEE-EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSS
T ss_pred             CC---EEEEEECCCCcEeE-EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCC
Confidence            88   999999998 4444 666 8899999999999999999998 8999999999999998887 5688999999999


Q ss_pred             CCEEEEEECCC--------------cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          592 GDNLIVGSREG--------------KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       592 g~~L~sGs~Dg--------------~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      +.++++|+.++              .+++||+.++ .++..+.+|...|++++|+|++++|++|+.||.|+||++.
T Consensus       271 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          271 KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             SSEEEEEECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred             CceEEEeecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence            99999999988              8999999987 7888999999999999999999999999999999999765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-32  Score=297.75  Aligned_cols=274  Identities=14%  Similarity=0.177  Sum_probs=233.7

Q ss_pred             CcEEEEEEccCCCccEEEE----------EeCCeEEEEECCCCCc----hhcccccceeeeccc-----ccccCCCCcEE
Q 005235          418 EAIQYVAWNPLPELPVLAV----------SVGQDVLILNTGLGNE----EEQRRVKDLLHVETP-----TAPDDNMASIV  478 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~----------s~d~~V~lwd~~~~~~----~~~~~~~~v~~~~~~-----~~~~~~d~~i~  478 (707)
                      ..|.+++|+|++...++++          +.|+.|++|++.++..    ....+...+.++.|+     +++++.++.++
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            3578899999984355565          5788999999987642    223466778888876     78888999999


Q ss_pred             EEecCC-----ccceEEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCc------eee--eee-ccCCCeE
Q 005235          479 SWLQHD-----KLDGIRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKL------SHR--IPF-KLHGLPV  543 (707)
Q Consensus       479 iW~~~~-----~~~~~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~------~~~--~~~-~~~~~V~  543 (707)
                      +|+...     .....+.+|...|.+++|+|+ +.+|++++.|+   .|++||+.+..      ...  ..+ .|...|.
T Consensus        93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG---EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI  169 (416)
T ss_dssp             EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSS---CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred             EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCC---eEEEEECCCCccccccccccccccccCCCCCee
Confidence            999987     233446789999999999998 89999999988   99999999876      321  123 6888999


Q ss_pred             EEEEeCC-CCEEEEEe-CCeEEEEECCCCeEEEEEeCC------CCCeEEEEEcCCC-CEEEEEECCC---cEEEEECCC
Q 005235          544 SSVFHPT-RSIFFVST-KKNIRVYDLLKQRLIKKLETG------LKEVSSIAIHPAG-DNLIVGSREG---KLCWFDMDL  611 (707)
Q Consensus       544 ~v~fspd-~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~------~~~I~sl~~spdg-~~L~sGs~Dg---~I~vwDl~~  611 (707)
                      +++|+|+ +.+|++++ |+.|++||+.+++.+..+..+      ...|.+++|+|++ .+|++|+.|+   .|++||+++
T Consensus       170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~  249 (416)
T 2pm9_A          170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN  249 (416)
T ss_dssp             EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred             EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence            9999999 78888887 899999999999999998876      6789999999997 6899999999   999999998


Q ss_pred             CCcceEEee-cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          612 SSKPYRVLK-CHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       612 ~~~~~~~l~-~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      ...++..+. +|...|++++|+| ++.+|++++.||+|+||+      +.+..   ++..+.+|...    |.+++|+|+
T Consensus       250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd------~~~~~---~~~~~~~~~~~----v~~~~~s~~  316 (416)
T 2pm9_A          250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN------PESAE---QLSQFPARGNW----CFKTKFAPE  316 (416)
T ss_dssp             TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC------SSSCC---EEEEEECSSSC----CCCEEECTT
T ss_pred             CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee------CCCCc---cceeecCCCCc----eEEEEECCC
Confidence            767788888 9999999999999 899999999999999994      44443   47888999887    999999999


Q ss_pred             C-CEEEEEeCCCcEEEEeC
Q 005235          690 Q-PWLFTAGADSVIRLYCH  707 (707)
Q Consensus       690 g-~~L~s~g~Dg~IrlWdl  707 (707)
                      + .+|++++.||.|+||++
T Consensus       317 ~~~~l~s~~~d~~i~iw~~  335 (416)
T 2pm9_A          317 APDLFACASFDNKIEVQTL  335 (416)
T ss_dssp             CTTEEEECCSSSEEEEEES
T ss_pred             CCCEEEEEecCCcEEEEEc
Confidence            9 79999999999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.3e-31  Score=318.50  Aligned_cols=346  Identities=15%  Similarity=0.151  Sum_probs=265.4

Q ss_pred             CCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccc
Q 005235          290 KLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKK  362 (707)
Q Consensus       290 ~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~  362 (707)
                      .+.+|..     +|+|+|.+|++...          +..+  |.......++.+.++...       +..+.|+|++   
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~----------~g~v~iwd~~~~~~~~~~~~~~~~-------v~~~~~s~~~---   67 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLY----------SGRVEIWNYETQVEVRSIQVTETP-------VRAGKFIARK---   67 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSSC-------EEEEEEEGGG---
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeC----------CCEEEEEECCCCceEEEEecCCCc-------EEEEEEeCCC---
Confidence            4566765     69999999998554          3333  333444455555444443       4677888765   


Q ss_pred             eeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCe
Q 005235          363 RVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQD  441 (707)
Q Consensus       363 ~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~  441 (707)
                                                .++++|+.||+|+||++.+++++..+.. .+.|.+++|+|++. .+++++.++.
T Consensus        68 --------------------------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~  120 (814)
T 3mkq_A           68 --------------------------NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLT  120 (814)
T ss_dssp             --------------------------TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSE
T ss_pred             --------------------------CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCE
Confidence                                      4899999999999999999999999886 88999999999994 7888889999


Q ss_pred             EEEEECCCCCc---hhcccccceeeeccc------ccccCCCCcEEEEecCCccceE-Ee-ccCCCeEEEEEcC--CCCE
Q 005235          442 VLILNTGLGNE---EEQRRVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGI-RL-RHFKMVSSVEWHR--RGDY  508 (707)
Q Consensus       442 V~lwd~~~~~~---~~~~~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~-~~-~h~~~V~~v~~sp--~g~~  508 (707)
                      |++|++.++..   .+..+...+.++.|+      +++++.++.|.+|+........ .. .+...+.+++|+|  ++.+
T Consensus       121 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (814)
T 3mkq_A          121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY  200 (814)
T ss_dssp             EEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE
T ss_pred             EEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE
Confidence            99999987632   344566677777664      7888999999999987654433 33 4558999999999  9999


Q ss_pred             EEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEE
Q 005235          509 LSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSI  586 (707)
Q Consensus       509 lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl  586 (707)
                      |++++.++   .|++|++.++... ..+ .|.+.|.+++|+|++++|++++ ||.|++||+.+++.+..+..+...+.++
T Consensus       201 l~~~~~dg---~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~  276 (814)
T 3mkq_A          201 MITASDDL---TIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI  276 (814)
T ss_dssp             EEEECTTS---EEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred             EEEEeCCC---EEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence            99999988   9999999998877 777 7899999999999999999998 8999999999999999999999999999


Q ss_pred             EEcCCCC--EEEEEECCCcEEEEECCCCCcc------------------------------------------eEEeecC
Q 005235          587 AIHPAGD--NLIVGSREGKLCWFDMDLSSKP------------------------------------------YRVLKCH  622 (707)
Q Consensus       587 ~~spdg~--~L~sGs~Dg~I~vwDl~~~~~~------------------------------------------~~~l~~h  622 (707)
                      +|+|+|.  ++++| .++.+.+|++......                                          ...+..+
T Consensus       277 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (814)
T 3mkq_A          277 ATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV  355 (814)
T ss_dssp             EECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC
T ss_pred             EEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCC
Confidence            9999997  35554 4667888887643111                                          0122334


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235          623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI  702 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I  702 (707)
                      ...+++++|+|+|++|++++ ||.+.||+.....          .    .+...    |.+++|+|++.+|++++.+|+|
T Consensus       356 ~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~----------~----~~~~~----i~~~~~spdg~~la~~~~~g~v  416 (814)
T 3mkq_A          356 DVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR----------N----KAFGK----CQDFVWGPDSNSYALIDETGQI  416 (814)
T ss_dssp             SSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE----------E----EEEEE----CSEEEECTTSSCEEEECTTCCE
T ss_pred             ccCCceeEECCCCCEEEEec-CCEEEEEECcccc----------c----cCCCc----eEEEEEeCCCCeEEEEeCCCcE
Confidence            55688999999999999998 8999999753110          0    11111    5566666666666666666666


Q ss_pred             EEEe
Q 005235          703 RLYC  706 (707)
Q Consensus       703 rlWd  706 (707)
                      ++|+
T Consensus       417 ~l~~  420 (814)
T 3mkq_A          417 KYYK  420 (814)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6663

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.8e-32  Score=295.79  Aligned_cols=271  Identities=9%  Similarity=0.076  Sum_probs=221.8

Q ss_pred             cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee-ccc-----ccccCCCCcEEEEecCCccceEE-e
Q 005235          419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV-ETP-----TAPDDNMASIVSWLQHDKLDGIR-L  491 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~-~~~-----~~~~~~d~~i~iW~~~~~~~~~~-~  491 (707)
                      .+++++|+|++ ..+++++.++.|++|++.++..........+... .++     +++++.++.+++|+......... .
T Consensus        58 ~~~~~~~s~~g-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           58 AGKGNTFEKVG-SHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ  136 (420)
T ss_dssp             CCTTCEEEEEE-TTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred             cccceeeeecC-CeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence            35578999999 4899999999999999987654322222222222 222     78889999999999987766554 5


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK  569 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~  569 (707)
                      +|...|.+++|+|++++|++++.|+   .|++||+.++... ..+ .|.+.|.+++|+|++.+|++++ |+.|++||+.+
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  212 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDM---QLKIWSVKDGSNP-RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT  212 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCCCC-EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             cccCccEEEEECCCCCEEEEEeCCC---eEEEEeCCCCcCc-eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence            8999999999999999999999998   9999999998887 778 8999999999999999999998 89999999999


Q ss_pred             CeEEEEEeCC---CCCeEE---------------------EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235          570 QRLIKKLETG---LKEVSS---------------------IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       570 ~~~~~~l~~~---~~~I~s---------------------l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      ++.+..+..+   ...|.+                     ++|+|+|.+|++|+.||.|++||+.++.........|...
T Consensus       213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  292 (420)
T 3vl1_A          213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS  292 (420)
T ss_dssp             TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred             CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence            9999988753   333444                     4557899999999999999999999885555555668899


Q ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-CCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235          626 ITNVAFHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-TSSNGRGVMDCKFHPRQPWLFTAGADSVIR  703 (707)
Q Consensus       626 I~~vafspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir  703 (707)
                      |++++|+|++. +|++|+.||.|+|||+.      +...  ++..+.+| ...    |.++.| +++.+|++++.||+|+
T Consensus       293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~------~~~~--~~~~~~~~~~~~----v~~~~~-~~~~~l~s~~~d~~v~  359 (420)
T 3vl1_A          293 CNSLTVDGNNANYIYAGYENGMLAQWDLR------SPEC--PVGEFLINEGTP----INNVYF-AAGALFVSSGFDTSIK  359 (420)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETT------CTTS--CSEEEEESTTSC----EEEEEE-ETTEEEEEETTTEEEE
T ss_pred             ceeEEEeCCCCCEEEEEeCCCeEEEEEcC------CCcC--chhhhhccCCCC----ceEEEe-CCCCEEEEecCCccEE
Confidence            99999999999 99999999999999654      3222  36677774 444    777755 5788999999999999


Q ss_pred             EEeC
Q 005235          704 LYCH  707 (707)
Q Consensus       704 lWdl  707 (707)
                      +|++
T Consensus       360 iw~~  363 (420)
T 3vl1_A          360 LDII  363 (420)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9984

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.8e-31  Score=286.20  Aligned_cols=270  Identities=13%  Similarity=0.128  Sum_probs=209.2

Q ss_pred             EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceE
Q 005235          410 CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGI  489 (707)
Q Consensus       410 ~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~  489 (707)
                      +...+.+.+.|.+++|+|+|  .+++++.++.+++|++.++..........                ....+........
T Consensus        57 ~~~~~~h~~~V~~v~fspdg--~~la~g~~~~v~i~~~~~g~~~~~l~~~~----------------~~~~~~~~~~~~~  118 (393)
T 1erj_A           57 LHKSLDHTSVVCCVKFSNDG--EYLATGCNKTTQVYRVSDGSLVARLSDDS----------------AANKDPENLNTSS  118 (393)
T ss_dssp             EEEEEECSSCCCEEEECTTS--SEEEEECBSCEEEEETTTCCEEEEECC-------------------------------
T ss_pred             eEEecCCCCEEEEEEECCCC--CEEEEEcCCcEEEEEecCCCEEEEecCcc----------------ccccccccccccc
Confidence            34456678999999999999  46666778999999988764321000000                0000000000001


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL  567 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl  567 (707)
                      ...+...|.+++|+|+|++|++++.|+   .|+|||+.++... ..+ .|...|.+++|+|++.+|++++ |++|++||+
T Consensus       119 ~~~~~~~v~~v~~s~dg~~l~s~~~d~---~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~  194 (393)
T 1erj_A          119 SPSSDLYIRSVCFSPDGKFLATGAEDR---LIRIWDIENRKIV-MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL  194 (393)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCCCceeEEEEEECCCCCEEEEEcCCC---eEEEEECCCCcEE-EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEEC
Confidence            123445699999999999999999998   9999999998877 777 8999999999999999999998 999999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEe-------ecCCCCEEEEEEcCCCCEEE
Q 005235          568 LKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVL-------KCHPKDITNVAFHRSYPLFA  639 (707)
Q Consensus       568 ~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-------~~h~~~I~~vafspdg~lla  639 (707)
                      .++++...+.. ...+.+++|+| +|.+|++|+.||.|++||+.++ ..+..+       .+|...|++++|+|++.+|+
T Consensus       195 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~  272 (393)
T 1erj_A          195 RTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  272 (393)
T ss_dssp             TTTEEEEEEEC-SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             CCCeeEEEEEc-CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence            99998888764 47799999999 8999999999999999999877 555555       57999999999999999999


Q ss_pred             EEeCCCcEEEEecccccCCCC---CCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          640 SCSDDCTAYVFHGMVYSDLNQ---NPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       640 Sgs~Dg~I~Vwd~~~~~Dl~~---~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +|+.||+|+|||+........   .....+...+.+|...    |.+++|+|++.+|++|+.||+|++||+
T Consensus       273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF----VLSVATTQNDEYILSGSKDRGVLFWDK  339 (393)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSC----EEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc----EEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            999999999998753221111   1112346678899987    999999999999999999999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1e-30  Score=277.50  Aligned_cols=247  Identities=14%  Similarity=0.134  Sum_probs=208.7

Q ss_pred             EEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceE
Q 005235          411 LRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGI  489 (707)
Q Consensus       411 l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~  489 (707)
                      ..++.+ .+.|++|+|+|++...|++++.|++|++|++.......                             ......
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-----------------------------~~~~~~   60 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF-----------------------------GVPVRS   60 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-----------------------------EEEEEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-----------------------------cccceE
Confidence            345555 88999999999764578899999999999964321100                             001123


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL  567 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl  567 (707)
                      +.+|...|.+++|+|+|.+|++++.|+   +|+|||+.++... ..+ .|.+.|.+++|+|++.+|++++ |++|++||+
T Consensus        61 ~~~h~~~v~~~~~s~dg~~l~s~s~D~---~v~~wd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           61 FKGHSHIVQDCTLTADGAYALSASWDK---TLRLWDVATGETY-QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEE-EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             EeCCcccEEEEEECCCCCEEEEEeCCC---EEEEEECCCCCee-EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            568999999999999999999999998   9999999999887 778 9999999999999999999998 999999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEEcCC------CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE
Q 005235          568 LKQRLIKKLETGLKEVSSIAIHPA------GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC  641 (707)
Q Consensus       568 ~~~~~~~~l~~~~~~I~sl~~spd------g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg  641 (707)
                      . +.++..+.+|...|.+++|+|.      +..|++|+.|+.|++||+... .....+.+|...|++++|+|++.+|++|
T Consensus       137 ~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~  214 (319)
T 3frx_A          137 K-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASA  214 (319)
T ss_dssp             T-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred             C-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence            6 5677888999999999999985      458999999999999999876 6778899999999999999999999999


Q ss_pred             eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +.||+|+|||+      .+..   ++..+..+. .    |.+++|+|++.+|++++.+ .|++|++
T Consensus       215 ~~dg~i~iwd~------~~~~---~~~~~~~~~-~----v~~~~~sp~~~~la~~~~~-~i~v~~~  265 (319)
T 3frx_A          215 GKDGEIMLWNL------AAKK---AMYTLSAQD-E----VFSLAFSPNRYWLAAATAT-GIKVFSL  265 (319)
T ss_dssp             ETTCEEEEEET------TTTE---EEEEEECCS-C----EEEEEECSSSSEEEEEETT-EEEEEEE
T ss_pred             eCCCeEEEEEC------CCCc---EEEEecCCC-c----EEEEEEcCCCCEEEEEcCC-CcEEEEe
Confidence            99999999954      3333   366676654 3    9999999999999988865 5999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.9e-31  Score=282.50  Aligned_cols=285  Identities=16%  Similarity=0.167  Sum_probs=215.1

Q ss_pred             CCCCCCcc-----cc-----CC-CCCccCChh---hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEE
Q 005235          289 PKLPGHEE-----SY-----NP-SLEYIPTQE---ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLY  354 (707)
Q Consensus       289 ~~lpgh~~-----sy-----nP-~ge~L~s~~---~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~  354 (707)
                      ..|.||..     .|     +| ++.+|++++   .++.|+....+....    ....+..+       .+|...+.++.
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~----~~~~~~~l-------~~h~~~V~~~~   83 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY----FGIPHKAL-------TGHNHFVSDLA   83 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB----SEEEEEEE-------CCCSSCEEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc----cccccchh-------ccCCCceEEEE
Confidence            35778876     35     66 899999954   466676432211000    11122233       33444457777


Q ss_pred             EcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccE
Q 005235          355 LCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPV  433 (707)
Q Consensus       355 l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~l  433 (707)
                      ++|+.                             .++++|+.|++|+|||+.+++++..+.. ...|.+++|+|++ ..|
T Consensus        84 ~~~~~-----------------------------~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l  133 (343)
T 2xzm_R           84 LSQEN-----------------------------CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQI  133 (343)
T ss_dssp             ECSST-----------------------------TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEE
T ss_pred             ECCCC-----------------------------CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEE
Confidence            77654                             4899999999999999999999998886 8899999999999 478


Q ss_pred             EEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-------
Q 005235          434 LAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-------  506 (707)
Q Consensus       434 la~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-------  506 (707)
                      ++++.|+.|++||+......                           ..     .....|...|.+++|+|++       
T Consensus       134 ~s~~~d~~i~~wd~~~~~~~---------------------------~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~  181 (343)
T 2xzm_R          134 LSAGAEREIKLWNILGECKF---------------------------SS-----AEKENHSDWVSCVRYSPIMKSANKVQ  181 (343)
T ss_dssp             EEEETTSCEEEEESSSCEEE---------------------------EC-----CTTTSCSSCEEEEEECCCCCSCSCCC
T ss_pred             EEEcCCCEEEEEeccCCcee---------------------------ee-----ecccCCCceeeeeeeccccccccccC
Confidence            88999999999997532100                           00     0012688899999999987       


Q ss_pred             ---CEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-CeEEEEEeCCC
Q 005235          507 ---DYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-QRLIKKLETGL  580 (707)
Q Consensus       507 ---~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~  580 (707)
                         .+|++++.|+   .|++||.. .... ..+ .|.+.|.+++|+|++.+|++++ |+.|++||+.. ......+. +.
T Consensus       182 ~~~~~l~s~~~d~---~i~iwd~~-~~~~-~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~  255 (343)
T 2xzm_R          182 PFAPYFASVGWDG---RLKVWNTN-FQIR-YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AG  255 (343)
T ss_dssp             SSCCEEEEEETTS---EEEEEETT-TEEE-EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CS
T ss_pred             CCCCEEEEEcCCC---EEEEEcCC-Ccee-EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CC
Confidence               7999999998   99999943 3333 566 8999999999999999999998 99999999943 44444443 34


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-ceEEee-----------cCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235          581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK-PYRVLK-----------CHPKDITNVAFHRSYPLFASCSDDCTAY  648 (707)
Q Consensus       581 ~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~-~~~~l~-----------~h~~~I~~vafspdg~llaSgs~Dg~I~  648 (707)
                      ..|.+++|+|++.+|++| .|+.|++||+.+... .+..+.           +|...|++++|+|+|++||+|+.||+|+
T Consensus       256 ~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~  334 (343)
T 2xzm_R          256 STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIR  334 (343)
T ss_dssp             SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEE
T ss_pred             CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEE
Confidence            579999999999888765 577899999986532 122443           6888999999999999999999999999


Q ss_pred             EEecc
Q 005235          649 VFHGM  653 (707)
Q Consensus       649 Vwd~~  653 (707)
                      +|++.
T Consensus       335 ~w~~~  339 (343)
T 2xzm_R          335 TFSFE  339 (343)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.5e-32  Score=300.41  Aligned_cols=269  Identities=16%  Similarity=0.157  Sum_probs=206.6

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLE---IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~---~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      ...+|++|+.||+|+|||+.++.....+.   +.+.|++|+|+|.....|++++.|++|++||+.+....          
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~----------  200 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR----------  200 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE----------
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee----------
Confidence            34689999999999999998876544443   37899999999843247888889999999997653110          


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP  542 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V  542 (707)
                                     ...       ....+...+.+++|+++|.+|++|+.|+   .|++||+.....  ..+ .|...|
T Consensus       201 ---------------~~~-------~~~~~~~~~~~~~~~~~~~~l~~g~~dg---~i~~wd~~~~~~--~~~~~h~~~v  253 (435)
T 4e54_B          201 ---------------VFA-------SSDTINIWFCSLDVSASSRMVVTGDNVG---NVILLNMDGKEL--WNLRMHKKKV  253 (435)
T ss_dssp             ---------------EEE-------CCSSCSCCCCCEEEETTTTEEEEECSSS---BEEEEESSSCBC--CCSBCCSSCE
T ss_pred             ---------------EEe-------ccCCCCccEEEEEECCCCCEEEEEeCCC---cEeeeccCccee--EEEecccceE
Confidence                           000       0112345678999999999999999988   999999976443  566 889999


Q ss_pred             EEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEE---EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceE
Q 005235          543 VSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIK---KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYR  617 (707)
Q Consensus       543 ~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~---~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~  617 (707)
                      .+++|+|++. +|++++ |+.|+|||+++.+...   ...+|...|++++|+|+|.+|++|+.||.|+|||+.++ ....
T Consensus       254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~  332 (435)
T 4e54_B          254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW-DCPL  332 (435)
T ss_dssp             EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS-SSEE
T ss_pred             EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC-ccce
Confidence            9999999986 566777 8999999998765332   33568889999999999999999999999999999987 4555


Q ss_pred             EeecCCC------CEEEEEEcCCCCEEEEEe------------CCCcEEEEecccccCCCCCCcccceEEee-CCCCCCC
Q 005235          618 VLKCHPK------DITNVAFHRSYPLFASCS------------DDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTSSNG  678 (707)
Q Consensus       618 ~l~~h~~------~I~~vafspdg~llaSgs------------~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~~~~  678 (707)
                      .+..|..      .+..+.|+|++.++++++            .++.|+||      |..++..   +..+. +|...  
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iw------d~~~g~~---~~~l~~~~~~~--  401 (435)
T 4e54_B          333 GLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVF------DGNSGKM---MCQLYDPESSG--  401 (435)
T ss_dssp             EECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEE------CSSSCCE---EEEECCSSCCC--
T ss_pred             EEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEE------ECCCCcE---EEEEeCCCCCc--
Confidence            5655542      234567888887777664            34579999      4445543   44544 56655  


Q ss_pred             CCeeEE-EEcCCCCEEEEEeCCCcEEEEeC
Q 005235          679 RGVMDC-KFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       679 ~gV~~l-~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                        |.++ +|||+|.+|++|+ |++|+||++
T Consensus       402 --v~s~~~fspdg~~lasg~-d~~i~iW~~  428 (435)
T 4e54_B          402 --ISSLNEFNPMGDTLASAM-GYHILIWSQ  428 (435)
T ss_dssp             --CCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred             --EEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence              8887 6999999999876 889999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-30  Score=276.87  Aligned_cols=255  Identities=13%  Similarity=0.113  Sum_probs=216.5

Q ss_pred             cEEEEEeCCCcEEEEeCCCCe----EEEEEecCCcEEEEEEccCCCc-cEEEEEeCCeEEEEEC-CCCCchhccccccee
Q 005235          389 YLEYKGSTDGTVRIWEVESGR----CLRVLEIGEAIQYVAWNPLPEL-PVLAVSVGQDVLILNT-GLGNEEEQRRVKDLL  462 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~----~l~~l~~~~~V~~v~~spdg~~-~lla~s~d~~V~lwd~-~~~~~~~~~~~~~v~  462 (707)
                      .++++|+.||+|+||++.++.    ......+...|.+++|+|++ . .|++++.++.|++|++ .++..          
T Consensus        24 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~----------   92 (342)
T 1yfq_A           24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSPSF----------   92 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSSSSE----------
T ss_pred             CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccCCce----------
Confidence            489999999999999999887    55555558999999999998 4 5888888999999997 65421          


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEec--cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC---------Cce
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLR--HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK---------KLS  531 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~--h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~---------~~~  531 (707)
                                               ..+..  |...|.+++|+| +.+|++++.|+   .|++||+.+         ...
T Consensus        93 -------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~  143 (342)
T 1yfq_A           93 -------------------------QALTNNEANLGICRICKYG-DDKLIAASWDG---LIEVIDPRNYGDGVIAVKNLN  143 (342)
T ss_dssp             -------------------------EECBSCCCCSCEEEEEEET-TTEEEEEETTS---EEEEECHHHHTTBCEEEEESC
T ss_pred             -------------------------EeccccCCCCceEEEEeCC-CCEEEEEcCCC---eEEEEcccccccccccccCCe
Confidence                                     12346  899999999999 99999999988   999999986         554


Q ss_pred             eeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-Ce--EEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEE
Q 005235          532 HRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-QR--LIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCW  606 (707)
Q Consensus       532 ~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-~~--~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~v  606 (707)
                      . ..+.+.+.|.+++|+|++  |++++ ++.|++||+.+ +.  .......+...|.+++|+| ++.+|++|+.||.|++
T Consensus       144 ~-~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i  220 (342)
T 1yfq_A          144 S-NNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV  220 (342)
T ss_dssp             S-SSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEE
T ss_pred             e-eEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEE
Confidence            4 455788999999999988  66666 89999999988 43  3344556778899999999 9999999999999999


Q ss_pred             EECCCC-----CcceEEeecCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC
Q 005235          607 FDMDLS-----SKPYRVLKCHPK---------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG  672 (707)
Q Consensus       607 wDl~~~-----~~~~~~l~~h~~---------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g  672 (707)
                      |+++..     ..+...+..|..         .|++++|+|++++|++|+.||.|+|||+      .+..   ++..+.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~------~~~~---~~~~~~~  291 (342)
T 1yfq_A          221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL------QTRK---KIKNFAK  291 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET------TTTE---EEEECCC
T ss_pred             EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC------ccHh---Hhhhhhc
Confidence            999876     477888988866         9999999999999999999999999954      3333   3778888


Q ss_pred             C-CCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235          673 H-TSSNGRGVMDCKFHPRQPWLFTAGADSV  701 (707)
Q Consensus       673 h-~~~~~~gV~~l~fspdg~~L~s~g~Dg~  701 (707)
                      | ...    |.+++  |++.+|++++.||+
T Consensus       292 ~h~~~----v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          292 FNEDS----VVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CSSSE----EEEEE--ECSSEEEEEEECTH
T ss_pred             ccCCC----ceEec--CCCCeEEEEecCCc
Confidence            8 776    99999  99999999999998

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.8e-31  Score=290.69  Aligned_cols=298  Identities=14%  Similarity=0.197  Sum_probs=216.4

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCe-----------EEEEEec-C------------CcEEEEEEccCCC-ccEEEEEeCCe
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGR-----------CLRVLEI-G------------EAIQYVAWNPLPE-LPVLAVSVGQD  441 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~-----------~l~~l~~-~------------~~V~~v~~spdg~-~~lla~s~d~~  441 (707)
                      ++.+|++|+.||.|+||++.+++           ++..+.. .            +.|.+|+|+|+++ ..+++++.|+.
T Consensus        39 ~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~  118 (447)
T 3dw8_B           39 SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT  118 (447)
T ss_dssp             SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSC
T ss_pred             CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCe
Confidence            34599999999999999999887           5667766 4            7899999999973 26899999999


Q ss_pred             EEEEECCCCCchhc-----ccccc------eeeecccccccCCCCcEEEEecCCccceE-EeccCCCeEEEEEcCCCCEE
Q 005235          442 VLILNTGLGNEEEQ-----RRVKD------LLHVETPTAPDDNMASIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYL  509 (707)
Q Consensus       442 V~lwd~~~~~~~~~-----~~~~~------v~~~~~~~~~~~~d~~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~l  509 (707)
                      |++|++..+.....     .....      +....+.  ..    ...-|......... ..+|...|.+++|+|+|++|
T Consensus       119 i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  192 (447)
T 3dw8_B          119 IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVP--VF----RPMDLMVEASPRRIFANAHTYHINSISINSDYETY  192 (447)
T ss_dssp             EEEEEEEEEEEEEECCSCC--------CCCCCSCCCC--EE----EEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE
T ss_pred             EEEEecccccCCcceecccCccccccCcccccceEec--cc----cchheeeeccceEEeccCCCcceEEEEEcCCCCEE
Confidence            99999865422100     00000      0000000  00    00001111111112 35799999999999999999


Q ss_pred             EEEeCCCCccEEEEEECCCCceeee-------ee-ccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECCCCeE----EEE
Q 005235          510 STVMPAGESRAIFMHQLSKKLSHRI-------PF-KLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLLKQRL----IKK  575 (707)
Q Consensus       510 at~s~dg~~~~V~Iwdl~~~~~~~~-------~~-~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~~~~~----~~~  575 (707)
                      +++ .|+   .|++||+........       .+ .|...|.+++|+|++ .+|++++ |+.|++||+++++.    +..
T Consensus       193 ~s~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  268 (447)
T 3dw8_B          193 LSA-DDL---RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKL  268 (447)
T ss_dssp             EEE-CSS---EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred             EEe-CCC---eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeE
Confidence            998 677   999999984332213       25 788999999999998 8999988 99999999999876    788


Q ss_pred             EeCCCC------------CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC---------------EEE
Q 005235          576 LETGLK------------EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD---------------ITN  628 (707)
Q Consensus       576 l~~~~~------------~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~---------------I~~  628 (707)
                      +..|..            .|.+++|+|+|.+|++|+. +.|++||+.....++..+.+|...               +..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~  347 (447)
T 3dw8_B          269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFE  347 (447)
T ss_dssp             ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCC
T ss_pred             eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceE
Confidence            888875            8999999999999999999 999999999744788888888642               334


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC-----------------------------CCCC
Q 005235          629 VAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS-----------------------------SNGR  679 (707)
Q Consensus       629 vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~-----------------------------~~~~  679 (707)
                      ++|+|++++|++|+.||.|+|||+..      ...    ..+.+|..                             ....
T Consensus       348 ~~~s~~~~~l~s~s~dg~v~iwd~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (447)
T 3dw8_B          348 CCWNGSDSVVMTGSYNNFFRMFDRNT------KRD----ITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNK  417 (447)
T ss_dssp             EEECTTSSEEEEECSTTEEEEEETTT------CCE----EEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTS
T ss_pred             EEECCCCCEEEEeccCCEEEEEEcCC------Ccc----eeeeecccccccccccCCccccccCCcccccccccccccCC
Confidence            99999999999999999999997643      221    12222210                             0112


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          680 GVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       680 gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .|.+++|||++.+||+++.++ +.+|.
T Consensus       418 ~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          418 KILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             CCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             ceeEEEECCCCCEEEEEecce-eeeec
Confidence            389999999999999998876 66664

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.3e-31  Score=285.35  Aligned_cols=283  Identities=15%  Similarity=0.167  Sum_probs=228.9

Q ss_pred             eCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEcc-CCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccC
Q 005235          395 STDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNP-LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDD  472 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~sp-dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~  472 (707)
                      +.+++++||++.+++....+.. .+.|++++|+| ++ ..|++++.|+.|++|++.++..............        
T Consensus        20 ~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------   90 (408)
T 4a11_B           20 RAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSI--------   90 (408)
T ss_dssp             HHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEE--------
T ss_pred             eccCcceeeccccCcceeeeeccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEeccccccc--------
Confidence            3456788898888777777765 89999999999 88 4788888999999999887643211100000000        


Q ss_pred             CCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCC
Q 005235          473 NMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTR  551 (707)
Q Consensus       473 ~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~  551 (707)
                                   ......+|...|.+++|+| ++.+|++++.|+   .|++|++.++... ..+.+...+.++.|+|.+
T Consensus        91 -------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~  153 (408)
T 4a11_B           91 -------------GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK---TLKVWDTNTLQTA-DVFNFEETVYSHHMSPVS  153 (408)
T ss_dssp             -------------CTTCTTCCSSCEEEEEECTTCTTCEEEEETTS---EEEEEETTTTEEE-EEEECSSCEEEEEECSSC
T ss_pred             -------------cccccccCCCcEEEEEEccCCCcEEEEEeCCC---eEEEeeCCCCccc-eeccCCCceeeeEeecCC
Confidence                         0000125899999999999 788999999988   9999999998876 666888899999999854


Q ss_pred             ---CEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcceEEe-------
Q 005235          552 ---SIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSKPYRVL-------  619 (707)
Q Consensus       552 ---~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~~l-------  619 (707)
                         .++++++ ++.|++||+.+++.+..+..|...|.+++|+|++. .|++|+.||.|++||++....++..+       
T Consensus       154 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  233 (408)
T 4a11_B          154 TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK  233 (408)
T ss_dssp             SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred             CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence               4888888 89999999999999999999999999999999998 58999999999999998876566666       


Q ss_pred             --------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCC------------------------------
Q 005235          620 --------KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQN------------------------------  661 (707)
Q Consensus       620 --------~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~------------------------------  661 (707)
                              ..|...|++++|+|++.+|++++.||.|++|++.........                              
T Consensus       234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
T 4a11_B          234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG  313 (408)
T ss_dssp             CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET
T ss_pred             ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC
Confidence                    578899999999999999999999999999987643211100                              


Q ss_pred             --------CcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          662 --------PLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       662 --------~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                              ....++..+.+|...    |.+++|+|++++|++++.||.|++|++
T Consensus       314 ~~i~v~d~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~~dg~i~iw~~  363 (408)
T 4a11_B          314 STIAVYTVYSGEQITMLKGHYKT----VDCCVFQSNFQELYSGSRDCNILAWVP  363 (408)
T ss_dssp             TEEEEEETTTCCEEEEECCCSSC----EEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CEEEEEECcCCcceeeeccCCCe----EEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence                    112356778889887    999999999999999999999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=4.3e-30  Score=284.10  Aligned_cols=266  Identities=14%  Similarity=0.214  Sum_probs=227.4

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      ++.++++|+.||+|+|||+.+++++..+.. .+.|.+++|  ++ ..+++++.|+.|++||+.++..             
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~-------------  205 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTGEM-------------  205 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSCCE-------------
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCCcE-------------
Confidence            456999999999999999999999999886 889999999  44 3688899999999999876522             


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee--eee-ccCCCe
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR--IPF-KLHGLP  542 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~-~~~~~V  542 (707)
                                           ...+.+|...|.+++|+  +.+|++++.|+   .|++||+.+.....  ..+ .|.+.|
T Consensus       206 ---------------------~~~~~~h~~~v~~l~~~--~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v  259 (435)
T 1p22_A          206 ---------------------LNTLIHHCEAVLHLRFN--NGMMVTCSKDR---SIAVWDMASPTDITLRRVLVGHRAAV  259 (435)
T ss_dssp             ---------------------EEEECCCCSCEEEEECC--TTEEEEEETTS---CEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             ---------------------EEEEcCCCCcEEEEEEc--CCEEEEeeCCC---cEEEEeCCCCCCceeeeEecCCCCcE
Confidence                                 11345789999999997  46999999998   99999998876541  234 888999


Q ss_pred             EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235          543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                      .+++|  ++.+|++++ |+.|++||+.+++++..+.+|...|.+++++  +.+|++|+.||.|++||+.++ .++..+.+
T Consensus       260 ~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~  334 (435)
T 1p22_A          260 NVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-ACLRVLEG  334 (435)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-CEEEEECC
T ss_pred             EEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC-CEEEEEeC
Confidence            99999  678899988 8999999999999999999999999999994  789999999999999999987 78899999


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235          622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV  701 (707)
Q Consensus       622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~  701 (707)
                      |...|.+++|  ++.+|++|+.||+|+|||+....+........++..+.+|...    |.+++|  ++.+|++++.||+
T Consensus       335 h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~--~~~~l~s~s~Dg~  406 (435)
T 1p22_A          335 HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR----VFRLQF--DEFQIVSSSHDDT  406 (435)
T ss_dssp             CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC----CCCEEE--CSSCEEECCSSSE
T ss_pred             CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC----eEEEEe--CCCEEEEEeCCCE
Confidence            9999999999  7889999999999999987654332222222357889999987    999999  7789999999999


Q ss_pred             EEEEeC
Q 005235          702 IRLYCH  707 (707)
Q Consensus       702 IrlWdl  707 (707)
                      |++||+
T Consensus       407 i~iwd~  412 (435)
T 1p22_A          407 ILIWDF  412 (435)
T ss_dssp             EEEEC-
T ss_pred             EEEEEC
Confidence            999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=1.8e-31  Score=282.90  Aligned_cols=246  Identities=15%  Similarity=0.169  Sum_probs=199.8

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|++++|+|+| ..|++++.|++|+|||+.++...                                ....+.+|.+.
T Consensus        13 ~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~--------------------------------~~~~l~gH~~~   59 (316)
T 3bg1_A           13 EDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQI--------------------------------LIADLRGHEGP   59 (316)
T ss_dssp             -CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEE--------------------------------EEEEEECCSSC
T ss_pred             cCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcE--------------------------------EEEEEcCCCcc
Confidence            7899999999999 47888899999999997653110                                01235689999


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCCcee-eeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECCC
Q 005235          497 VSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKKLSH-RIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLLK  569 (707)
Q Consensus       497 V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~~~~-~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~~  569 (707)
                      |.+++|++  +|++|++++.|+   +|+|||+.++... ...+ .|.+.|.+++|+|+  +.+|++++ |++|++||+..
T Consensus        60 V~~v~~~~~~~~~~l~s~s~D~---~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           60 VWQVAWAHPMYGNILASCSYDR---KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             EEEEEECCGGGSSCEEEEETTS---CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred             EEEEEeCCCCCCCEEEEEECCC---EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence            99999986  489999999998   9999999876422 1456 78999999999998  78899988 99999999987


Q ss_pred             Ce---EEEEEeCCCCCeEEEEEcCC-----------------CCEEEEEECCCcEEEEECCCCC--cceEEeecCCCCEE
Q 005235          570 QR---LIKKLETGLKEVSSIAIHPA-----------------GDNLIVGSREGKLCWFDMDLSS--KPYRVLKCHPKDIT  627 (707)
Q Consensus       570 ~~---~~~~l~~~~~~I~sl~~spd-----------------g~~L~sGs~Dg~I~vwDl~~~~--~~~~~l~~h~~~I~  627 (707)
                      +.   ....+.+|...|.+++|+|+                 +.+|++|+.|+.|++||+....  .+...+.+|...|+
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~  216 (316)
T 3bg1_A          137 EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVR  216 (316)
T ss_dssp             SSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEE
T ss_pred             CCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceE
Confidence            53   23445678888999999997                 4789999999999999997542  35677899999999


Q ss_pred             EEEEcCCC----CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235          628 NVAFHRSY----PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR  703 (707)
Q Consensus       628 ~vafspdg----~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir  703 (707)
                      +++|+|++    .+||+|+.||+|+||++...   .....  ....+.+|...    |.+++|+|++++|++++.||+|+
T Consensus       217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~---~~~~~--~~~~~~~~~~~----v~~v~~sp~g~~las~~~D~~v~  287 (316)
T 3bg1_A          217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA---SSNTW--SPKLLHKFNDV----VWHVSWSITANILAVSGGDNKVT  287 (316)
T ss_dssp             EEECCCCSSCSCCEEEEEETTCEEEEEECSST---TCCCC--BCCEEEECSSC----EEEEEECTTTCCEEEEESSSCEE
T ss_pred             EEEecCCCCCCCceEEEEcCCCeEEEEEccCc---cccch--hhhhhhcCCCc----EEEEEEcCCCCEEEEEcCCCeEE
Confidence            99999987    79999999999999976421   11111  12345677776    99999999999999999999999


Q ss_pred             EEeC
Q 005235          704 LYCH  707 (707)
Q Consensus       704 lWdl  707 (707)
                      ||++
T Consensus       288 lw~~  291 (316)
T 3bg1_A          288 LWKE  291 (316)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9973

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=9.1e-30  Score=267.11  Aligned_cols=229  Identities=17%  Similarity=0.189  Sum_probs=190.0

Q ss_pred             CcEEEEEeCCCcEEEEeCCC--CeEEEEEec-CCcEEEEEEccC--CCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          388 CYLEYKGSTDGTVRIWEVES--GRCLRVLEI-GEAIQYVAWNPL--PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~t--g~~l~~l~~-~~~V~~v~~spd--g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      +.+|++|+.|++|+||++.+  ++++.++.+ .+.|.+|+|+|+  + ..|++++.|++|++|++.++...         
T Consensus        21 g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~~---------   90 (297)
T 2pm7_B           21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRWS---------   90 (297)
T ss_dssp             SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCBC---------
T ss_pred             CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCceE---------
Confidence            35899999999999999974  467777776 889999999864  5 46888899999999998654210         


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCcee-eeee-cc
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSH-RIPF-KL  538 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~-~~~~-~~  538 (707)
                                             ....+..|...|.+++|+|+  |.+|++++.|+   .|++|++...... ...+ .|
T Consensus        91 -----------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~---~v~~wd~~~~~~~~~~~~~~h  144 (297)
T 2pm7_B           91 -----------------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG---KVSVVEFKENGTTSPIIIDAH  144 (297)
T ss_dssp             -----------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEEBCSSSCBCCEEEECC
T ss_pred             -----------------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCC---cEEEEEecCCCceeeeeeecc
Confidence                                   01124578999999999997  89999999998   9999999876422 1445 88


Q ss_pred             CCCeEEEEEeCC-------------CCEEEEEe-CCeEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCC---CEEEE
Q 005235          539 HGLPVSSVFHPT-------------RSIFFVST-KKNIRVYDLLKQR----LIKKLETGLKEVSSIAIHPAG---DNLIV  597 (707)
Q Consensus       539 ~~~V~~v~fspd-------------~~~l~v~s-dg~I~iwDl~~~~----~~~~l~~~~~~I~sl~~spdg---~~L~s  597 (707)
                      ...|.+++|+|+             +.+|++|+ |++|++||+.++.    +...+.+|...|.+++|+|++   .+|++
T Consensus       145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las  224 (297)
T 2pm7_B          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS  224 (297)
T ss_dssp             SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence            999999999997             46899888 9999999998764    677889999999999999985   89999


Q ss_pred             EECCCcEEEEECCCCCcc--eEEe--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          598 GSREGKLCWFDMDLSSKP--YRVL--KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       598 Gs~Dg~I~vwDl~~~~~~--~~~l--~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      |+.|++|++||++....+  ...+  ..|...|.+++|+|++++||+++.||+|+||+.
T Consensus       225 ~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             EECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            999999999999864321  2334  467889999999999999999999999999964

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.9e-30  Score=274.94  Aligned_cols=255  Identities=15%  Similarity=0.169  Sum_probs=205.4

Q ss_pred             CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc
Q 005235          408 GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL  486 (707)
Q Consensus       408 g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~  486 (707)
                      |+++..+.+ .+.|++++|+|++. .|++++.|+.|+||++.....                                ..
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~--------------------------------~~   47 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETH--------------------------------KL   47 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEE--------------------------------EE
T ss_pred             CCccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcc--------------------------------ee
Confidence            344555655 88999999999994 677788899999999753211                                01


Q ss_pred             ceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCc--eeeeee-ccCCCeEEEEEeCC--CCEEEEEe-
Q 005235          487 DGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKL--SHRIPF-KLHGLPVSSVFHPT--RSIFFVST-  558 (707)
Q Consensus       487 ~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~--~~~~~~-~~~~~V~~v~fspd--~~~l~v~s-  558 (707)
                      ...+.+|...|.+++|+++  +.+|++++.|+   .|++||+.++.  .. ..+ .+...|.+++|+|+  +.+|++++ 
T Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  123 (379)
T 3jrp_A           48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDG---KVLIWKEENGRWSQI-AVHAVHSASVNSVQWAPHEYGPLLLVASS  123 (379)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTS---CEEEEEEETTEEEEE-EEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             eeEecCCCCcEEEEEeCCCCCCCEEEEeccCC---EEEEEEcCCCceeEe-eeecCCCcceEEEEeCCCCCCCEEEEecC
Confidence            1235579999999999977  99999999998   99999999886  33 455 78899999999999  89999988 


Q ss_pred             CCeEEEEECCCC--eEEEEEeCCCCCeEEEEEcC-------------CCCEEEEEECCCcEEEEECCCCC---cceEEee
Q 005235          559 KKNIRVYDLLKQ--RLIKKLETGLKEVSSIAIHP-------------AGDNLIVGSREGKLCWFDMDLSS---KPYRVLK  620 (707)
Q Consensus       559 dg~I~iwDl~~~--~~~~~l~~~~~~I~sl~~sp-------------dg~~L~sGs~Dg~I~vwDl~~~~---~~~~~l~  620 (707)
                      |+.|++||+.++  .....+..|...|.+++|+|             ++.+|++|+.||.|++||+..+.   .+...+.
T Consensus       124 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  203 (379)
T 3jrp_A          124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE  203 (379)
T ss_dssp             TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred             CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe
Confidence            999999999886  34556778989999999999             69999999999999999998763   2456778


Q ss_pred             cCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235          621 CHPKDITNVAFHRS---YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       621 ~h~~~I~~vafspd---g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g  697 (707)
                      +|...|++++|+|+   +.+|++++.||.|+||++....    ......+.....|...    |.+++|+|++.+|++++
T Consensus       204 ~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~----v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          204 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ----GPWKKTLLKEEKFPDV----LWRASWSLSGNVLALSG  275 (379)
T ss_dssp             CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT----SCCEEEESSSSCCSSC----EEEEEECSSSCCEEEEE
T ss_pred             cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC----ccceeeeeccccCCCc----EEEEEEcCCCCEEEEec
Confidence            89999999999999   8999999999999999764221    1111112222346665    99999999999999999


Q ss_pred             CCCcEEEEeC
Q 005235          698 ADSVIRLYCH  707 (707)
Q Consensus       698 ~Dg~IrlWdl  707 (707)
                      .||.|++|++
T Consensus       276 ~dg~i~iw~~  285 (379)
T 3jrp_A          276 GDNKVTLWKE  285 (379)
T ss_dssp             SSSSEEEEEE
T ss_pred             CCCcEEEEeC
Confidence            9999999984

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.5e-29  Score=266.21  Aligned_cols=298  Identities=14%  Similarity=0.101  Sum_probs=208.4

Q ss_pred             ccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEec
Q 005235          341 NAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG----RCLRVLEI  416 (707)
Q Consensus       341 ~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg----~~l~~l~~  416 (707)
                      .++.+|...+..+.|+|+.                             .+|++|+.||+|+||++.++    +++..+..
T Consensus         5 ~~~~gH~~~v~~~~~~~~~-----------------------------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~   55 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYG-----------------------------RHVATCSSDQHIKVFKLDKDTSNWELSDSWRA   55 (351)
T ss_dssp             CEECCCSSCEEEEEECSSS-----------------------------SEEEEEETTSEEEEEEECSSSCCEEEEEEEEC
T ss_pred             ccCcccccceeEEEEcCCC-----------------------------CEEEEeeCCCeEEEEECCCCCCcceecceecc
Confidence            3455666666888888654                             48999999999999999876    46666665


Q ss_pred             -CCcEEEEEEcc--CCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc
Q 005235          417 -GEAIQYVAWNP--LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH  493 (707)
Q Consensus       417 -~~~V~~v~~sp--dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h  493 (707)
                       ...|.+++|+|  ++ ..|++++.|+.|++|++..+........                     |    .....+..|
T Consensus        56 ~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~---------------------~----~~~~~~~~~  109 (351)
T 3f3f_A           56 HDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRR---------------------W----NKLCTLNDS  109 (351)
T ss_dssp             CSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCS---------------------E----EEEEEECCC
T ss_pred             CCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccC---------------------c----ceeeeeccc
Confidence             88999999999  46 4788888999999999877633210000                     0    011235578


Q ss_pred             CCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCceeeeee--------------ccCCCeEEEEEeCC---CCEE
Q 005235          494 FKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--------------KLHGLPVSSVFHPT---RSIF  554 (707)
Q Consensus       494 ~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--------------~~~~~V~~v~fspd---~~~l  554 (707)
                      ...|.+++|+|+  +.+|++++.|+   .|++||+.+.... ..+              .+...+.+++|+|+   +.+|
T Consensus       110 ~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l  185 (351)
T 3f3f_A          110 KGSLYSVKFAPAHLGLKLACLGNDG---ILRLYDALEPSDL-RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL  185 (351)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTC---EEEEEECSSTTCT-TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred             CCceeEEEEcCCCCCcEEEEecCCC---cEEEecCCChHHh-ccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence            999999999999  99999999998   9999999877643 211              46778999999997   8899


Q ss_pred             EEEe-CCeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCC----CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEE
Q 005235          555 FVST-KKNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAG----DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT  627 (707)
Q Consensus       555 ~v~s-dg~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg----~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~  627 (707)
                      ++++ ++.+.+|+...++.  +..+.+|...|++++|+|++    .+|++|+.||.|++||+..+.. ......+...+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~  264 (351)
T 3f3f_A          186 AVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS-PLASEESLTNSN  264 (351)
T ss_dssp             EEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------
T ss_pred             EEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC-ccccCCccccee
Confidence            9988 88888888777754  67788899999999999998    8999999999999999987633 223333444455


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          628 NVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       628 ~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ...+++....++++..++....+.     .+.......++..+.+|...    |++++|+|++++|++++.||.|+||++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          265 MFDNSADVDMDAQGRSDSNTEEKA-----ELQSNLQVELLSEHDDHNGE----VWSVSWNLTGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             -------------------------------CCSEEEEEEEEECTTSSC----EEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             ccCCCcccccccccccccccceee-----eecccccccEEEEEeccccc----EEEEEEcCCCCEEEEecCCCcEEEEec
Confidence            555555555555555443222110     12222333457888999887    999999999999999999999999984

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=4.6e-30  Score=271.98  Aligned_cols=228  Identities=18%  Similarity=0.166  Sum_probs=189.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccC--CCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          389 YLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPL--PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spd--g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      .+|++|+.|++|+|||+.++.  ++..+.+ .+.|.+|+|+|+  + ..|++++.|++|++||+.++...          
T Consensus        26 ~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~v~iWd~~~~~~~----------   94 (316)
T 3bg1_A           26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRKVIIWREENGTWE----------   94 (316)
T ss_dssp             CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSCEEEECCSSSCCC----------
T ss_pred             CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCEEEEEECCCCcce----------
Confidence            489999999999999998875  4566665 789999999863  5 47889999999999997654210          


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCcee--eeee-cc
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF-KL  538 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~-~~  538 (707)
                                            ....+.+|...|.+++|+|+  |.+|++++.|+   .|++|++......  ...+ .|
T Consensus        95 ----------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~---~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           95 ----------------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG---AISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             ----------------------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSS---CEEEEEECSSSCEEECCBTTSS
T ss_pred             ----------------------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCC---CEEEEecCCCCCcceeeeeccc
Confidence                                  01124579999999999997  88999999998   9999999876321  1334 78


Q ss_pred             CCCeEEEEEeCC-----------------CCEEEEEe-CCeEEEEECCCC---eEEEEEeCCCCCeEEEEEcCCC----C
Q 005235          539 HGLPVSSVFHPT-----------------RSIFFVST-KKNIRVYDLLKQ---RLIKKLETGLKEVSSIAIHPAG----D  593 (707)
Q Consensus       539 ~~~V~~v~fspd-----------------~~~l~v~s-dg~I~iwDl~~~---~~~~~l~~~~~~I~sl~~spdg----~  593 (707)
                      ...|.+++|+|+                 +.+|++++ |++|++||+..+   +++..+.+|..+|.+++|+|++    .
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~  229 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS  229 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence            889999999997                 36788888 999999999754   5677888999999999999987    8


Q ss_pred             EEEEEECCCcEEEEECCCC---CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          594 NLIVGSREGKLCWFDMDLS---SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       594 ~L~sGs~Dg~I~vwDl~~~---~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +|++|+.|++|++||+...   ......+..|...|.+++|+|++++||+|+.||+|+||+.
T Consensus       230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence            9999999999999999762   1223456778999999999999999999999999999964

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=3.6e-29  Score=277.16  Aligned_cols=302  Identities=15%  Similarity=0.168  Sum_probs=249.7

Q ss_pred             CCCCCcc----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccce
Q 005235          290 KLPGHEE----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKR  363 (707)
Q Consensus       290 ~lpgh~~----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~  363 (707)
                      .+.||..    +++++|.+|++++.          |..+  |.......++.+.++...|       ..+.+++      
T Consensus       113 ~l~~h~~~v~~~~~~~g~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~h~~~v-------~~~~~~~------  169 (445)
T 2ovr_B          113 VLKGHDDHVITCLQFCGNRIVSGSD----------DNTLKVWSAVTGKCLRTLVGHTGGV-------WSSQMRD------  169 (445)
T ss_dssp             EEECSTTSCEEEEEEETTEEEEEET----------TSCEEEEETTTCCEEEECCCCSSCE-------EEEEEET------
T ss_pred             EecccCCCcEEEEEEcCCEEEEEEC----------CCcEEEEECCCCcEEEEEcCCCCCE-------EEEEecC------
Confidence            5677765    47788999998655          4444  4445556666666555544       4444431      


Q ss_pred             eecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeE
Q 005235          364 VNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDV  442 (707)
Q Consensus       364 lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V  442 (707)
                                               .++++|+.||+|++||+.+++++..+.. ...|.+++|+++   .+++++.|+.|
T Consensus       170 -------------------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~l~s~s~dg~i  221 (445)
T 2ovr_B          170 -------------------------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATL  221 (445)
T ss_dssp             -------------------------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT---EEEEEETTSEE
T ss_pred             -------------------------CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC---EEEEEeCCCEE
Confidence                                     3899999999999999999999999886 789999999754   59999999999


Q ss_pred             EEEECCCCCc--hhcccccceeeeccc---ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 005235          443 LILNTGLGNE--EEQRRVKDLLHVETP---TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVMPAG  516 (707)
Q Consensus       443 ~lwd~~~~~~--~~~~~~~~v~~~~~~---~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s~dg  516 (707)
                      ++||+.++..  .+..+...+.++.+.   +++++.++.+.+|+....... .+.+|...|.+++|  ++.+|++++.|+
T Consensus       222 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~  299 (445)
T 2ovr_B          222 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT  299 (445)
T ss_dssp             EEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred             EEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence            9999988764  344566667666665   788999999999998866543 36679999999999  889999999998


Q ss_pred             CccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC---CCCCeEEEEEcCC
Q 005235          517 ESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET---GLKEVSSIAIHPA  591 (707)
Q Consensus       517 ~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~---~~~~I~sl~~spd  591 (707)
                         .|++||+.++... ..+ .+...+.++.++  +.+|++++ |+.|++||+.+++.+..+..   |...|.+++|+  
T Consensus       300 ---~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--  371 (445)
T 2ovr_B          300 ---SIRVWDVETGNCI-HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--  371 (445)
T ss_dssp             ---CEEEEETTTCCEE-EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--
T ss_pred             ---eEEEEECCCCCEE-EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--
Confidence               9999999999887 777 888889888875  56888888 99999999999999999986   77889999996  


Q ss_pred             CCEEEEEECCCcEEEEECCCCCcceEEe-----ecCCCCEEEEEEcCCCCEEEEEeCCCc----EEEEecc
Q 005235          592 GDNLIVGSREGKLCWFDMDLSSKPYRVL-----KCHPKDITNVAFHRSYPLFASCSDDCT----AYVFHGM  653 (707)
Q Consensus       592 g~~L~sGs~Dg~I~vwDl~~~~~~~~~l-----~~h~~~I~~vafspdg~llaSgs~Dg~----I~Vwd~~  653 (707)
                      +.+|++|+.||.|++||+.++ +.+..+     ..|...|++++|+|++.+||+|+.||+    |.|||+.
T Consensus       372 ~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          372 KNFVITSSDDGTVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             SSEEEEEETTSEEEEEETTTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCEEEEEeCCCeEEEEECCCC-ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            689999999999999999987 667777     478899999999999999999999998    9999653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-30  Score=275.92  Aligned_cols=266  Identities=10%  Similarity=0.052  Sum_probs=212.1

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      .+..++++|+.||+|+|||+.+++++..+. ...|.++.|+|+    +++++.|++|++|+..                 
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~----~~s~s~D~~i~~w~~~-----------------  103 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA----IISRGPCNRLLLLYPG-----------------  103 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS----EEEECSTTEEEEEETT-----------------
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc----eEEecCCCeEEEEEcc-----------------
Confidence            455789999999999999999999988887 466788888887    8999999999999964                 


Q ss_pred             ccccccCCCCcEEEEecCCccceE--EeccCCCeEEEEEcC--CCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccC
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGI--RLRHFKMVSSVEWHR--RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLH  539 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~--~~~h~~~V~~v~~sp--~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~  539 (707)
                               +.+.+|+........  ..+|...|.+++|+|  ++++|++++.|+   .|++||+.++... ..+  .+.
T Consensus       104 ---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~-~~~~~~~~  170 (343)
T 3lrv_A          104 ---------NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG---TIGFQSYEDDSQY-IVHSAKSD  170 (343)
T ss_dssp             ---------TEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTC---CEEEEESSSSCEE-EEECCCSS
T ss_pred             ---------CceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC---cEEEEECCCCcEE-EEEecCCC
Confidence                     356778777655322  447778999999999  999999999998   9999999998875 444  556


Q ss_pred             CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE-EEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235          540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI-KKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~-~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                      ..+.+++|+|++.+|++|+ |+.|++||+++++.+ ..+.. |...|++++|+|+|.+|++|+ ++.|++||++.. .+.
T Consensus       171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~-~~~  248 (343)
T 3lrv_A          171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD-VGT  248 (343)
T ss_dssp             CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS-TTC
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC-Ccc
Confidence            6899999999999999988 999999999998877 77887 899999999999999999999 559999999976 443


Q ss_pred             EEeec---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC--
Q 005235          617 RVLKC---HPKDIT--NVAFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP--  688 (707)
Q Consensus       617 ~~l~~---h~~~I~--~vafspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp--  688 (707)
                      ..+..   |...+.  +++|+|++++|++++. |+.|+||++..      ...   ....    ..    +..++|+|  
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~------~~~---~~~~----~~----~~~~~~~~~~  311 (343)
T 3lrv_A          249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK------KTK---NWTK----DE----ESALCLQSDT  311 (343)
T ss_dssp             BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT------TTC---SEEE----EE----EEECCC----
T ss_pred             eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc------ccc---ceEe----cC----ceeEecCccc
Confidence            33332   444444  6999999999999998 99999996532      111   0111    12    67788888  


Q ss_pred             -CCCEEEEEeCCCcEEEE
Q 005235          689 -RQPWLFTAGADSVIRLY  705 (707)
Q Consensus       689 -dg~~L~s~g~Dg~IrlW  705 (707)
                       +...|++++.||.++++
T Consensus       312 ~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          312 ADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             CCCCEEEEEEETTEEEEE
T ss_pred             cccceeEEEecCCceEEE
Confidence             78888888888888876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=5.1e-29  Score=265.49  Aligned_cols=262  Identities=16%  Similarity=0.196  Sum_probs=212.0

Q ss_pred             cEEEEEeCCCcEEEEeCCC-CeEE-EEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          389 YLEYKGSTDGTVRIWEVES-GRCL-RVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~t-g~~l-~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      .++++|+.||+|+||++.+ +..+ ..+.. .+.|.+++|+|++ ..|++++.|+.|++|++.++..             
T Consensus        55 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~-------------  120 (368)
T 3mmy_A           55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSSNQA-------------  120 (368)
T ss_dssp             EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE-------------
T ss_pred             eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCCCCc-------------
Confidence            5899999999999999997 6655 55554 8899999999999 4788888999999999876421             


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE--cCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeE
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW--HRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPV  543 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~--sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~  543 (707)
                                            .....|...|.+++|  ++++.+|++++.|+   .|++||+.++... ..+.....+.
T Consensus       121 ----------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~-~~~~~~~~~~  174 (368)
T 3mmy_A          121 ----------------------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDK---TLKFWDTRSSNPM-MVLQLPERCY  174 (368)
T ss_dssp             ----------------------EEEEECSSCEEEEEEEECSSCEEEEEEETTS---EEEEECSSCSSCS-EEEECSSCEE
T ss_pred             ----------------------eeeccccCceEEEEEEeCCCCCEEEEccCCC---cEEEEECCCCcEE-EEEecCCCce
Confidence                                  124579999999999  89999999999998   9999999998876 6775556777


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCE----EEEEECCCcEEEEECCCCC--c
Q 005235          544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAGDN----LIVGSREGKLCWFDMDLSS--K  614 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg~~----L~sGs~Dg~I~vwDl~~~~--~  614 (707)
                      ++.+.+  ..+++++ ++.+++|++..........  .....+.++++.+++..    +++|+.||.|++||++...  .
T Consensus       175 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~  252 (368)
T 3mmy_A          175 CADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK  252 (368)
T ss_dssp             EEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred             EEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc
Confidence            777775  4666666 8999999998764433322  23345677777666554    9999999999999998753  4


Q ss_pred             ceEEeecCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCee
Q 005235          615 PYRVLKCHPK------------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVM  682 (707)
Q Consensus       615 ~~~~l~~h~~------------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~  682 (707)
                      +...+.+|..            .|++++|+|++.+|++|+.||.|+|||+      .+..   ++..+.+|...    |.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~------~~~~---~~~~~~~~~~~----v~  319 (368)
T 3mmy_A          253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK------DART---KLKTSEQLDQP----IS  319 (368)
T ss_dssp             HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET------TTTE---EEEECCCCSSC----EE
T ss_pred             cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC------CCCc---EEEEecCCCCC----ce
Confidence            5677888876            7999999999999999999999999954      3333   47888899887    99


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEE
Q 005235          683 DCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       683 ~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      +++|+|++.+|++++.|+..+.|
T Consensus       320 ~~~~s~~g~~l~~~s~d~~~~~~  342 (368)
T 3mmy_A          320 ACCFNHNGNIFAYASSYDWSKGH  342 (368)
T ss_dssp             EEEECTTSSCEEEEECCCSTTCG
T ss_pred             EEEECCCCCeEEEEecccccccc
Confidence            99999999999999998865443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=1.6e-29  Score=273.92  Aligned_cols=229  Identities=17%  Similarity=0.222  Sum_probs=196.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeE-----EEEEecC------CcEEEEEEc----cCCCcc-EEEEEeCCeEEEEECCC---
Q 005235          389 YLEYKGSTDGTVRIWEVESGRC-----LRVLEIG------EAIQYVAWN----PLPELP-VLAVSVGQDVLILNTGL---  449 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~-----l~~l~~~------~~V~~v~~s----pdg~~~-lla~s~d~~V~lwd~~~---  449 (707)
                      .++++|+.||+|++|++.++++     +..+...      ..|.+++|+    |++. . |++++.++.|++|++..   
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSSS
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCcccc
Confidence            4899999999999999998886     7777663      899999999    9984 6 88888999999999876   


Q ss_pred             ---CCchhcccccceeeecccccccCCCCcEEEEecCCccceEE-------eccCCCeEEEEEcCCCCEEEEEeCCCCcc
Q 005235          450 ---GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR-------LRHFKMVSSVEWHRRGDYLSTVMPAGESR  519 (707)
Q Consensus       450 ---~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~-------~~h~~~V~~v~~sp~g~~lat~s~dg~~~  519 (707)
                         +....                         |.    ....+       ..|...|.+++|+|++ +|++++.++   
T Consensus       161 ~~~~~~~~-------------------------~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg---  207 (397)
T 1sq9_A          161 ESNSLTLN-------------------------WS----PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG---  207 (397)
T ss_dssp             HHHHTTTC-------------------------CC----CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS---
T ss_pred             ccccceee-------------------------cc----CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC---
Confidence               21110                         00    00011       3578899999999999 999999988   


Q ss_pred             EEEEEECCCCceeeeee-c---c---CCCeEEEEEeCCCCEEEEEe-C---CeEEEEECCCCeEEEEEeC----------
Q 005235          520 AIFMHQLSKKLSHRIPF-K---L---HGLPVSSVFHPTRSIFFVST-K---KNIRVYDLLKQRLIKKLET----------  578 (707)
Q Consensus       520 ~V~Iwdl~~~~~~~~~~-~---~---~~~V~~v~fspd~~~l~v~s-d---g~I~iwDl~~~~~~~~l~~----------  578 (707)
                      .|++||+.+.... ..+ .   |   ...|.+++|+|++.+|++++ |   +.|++||+.+++.+..+..          
T Consensus       208 ~i~i~d~~~~~~~-~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~  286 (397)
T 1sq9_A          208 TVQISELSTLRPL-YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG  286 (397)
T ss_dssp             EEEEEETTTTEEE-EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred             cEEEEECCCCcee-EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc
Confidence            9999999988776 777 6   7   89999999999999999988 7   9999999999999999988          


Q ss_pred             ---CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee------cC---------------CCCEEEEEEcCC
Q 005235          579 ---GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK------CH---------------PKDITNVAFHRS  634 (707)
Q Consensus       579 ---~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~------~h---------------~~~I~~vafspd  634 (707)
                         |...|.+++|+|++.+|++|+.||.|++||+.++ +++..+.      +|               ...|++++|+|+
T Consensus       287 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~  365 (397)
T 1sq9_A          287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK  365 (397)
T ss_dssp             CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred             ccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence               8899999999999999999999999999999887 7888898      88               999999999999


Q ss_pred             C----------CEEEEEeCCCcEEEEecc
Q 005235          635 Y----------PLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       635 g----------~llaSgs~Dg~I~Vwd~~  653 (707)
                      +          ++|++|+.||.|+||++.
T Consensus       366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          366 GWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             TTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             cccccccccccceEEEecCCCcEEEEEcC
Confidence            8          799999999999999653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=5.8e-30  Score=279.69  Aligned_cols=274  Identities=14%  Similarity=0.116  Sum_probs=217.9

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeE----EEEEec-CCcEEEEEEcc-CCCccEEEEEeCCeEEEEECCCCCchhcccccce
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRC----LRVLEI-GEAIQYVAWNP-LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~----l~~l~~-~~~V~~v~~sp-dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      ..++++|+.||.|+||++.+...    +..+.. .+.|.+++|+| ++ ..|++++.|+.|++|++.++.....      
T Consensus        47 ~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~------  119 (402)
T 2aq5_A           47 MALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLP------  119 (402)
T ss_dssp             EEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSC------
T ss_pred             EEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccc------
Confidence            34666789999999999965432    223333 78999999999 66 4788888899999999877532100      


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee---c
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF---K  537 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~  537 (707)
                                           .......+.+|...|.+++|+|++ .+|++++.|+   .|+|||+.++... ..+   .
T Consensus       120 ---------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~-~~~~~~~  174 (402)
T 2aq5_A          120 ---------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN---VILVWDVGTGAAV-LTLGPDV  174 (402)
T ss_dssp             ---------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS---CEEEEETTTTEEE-EEECTTT
T ss_pred             ---------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC---EEEEEECCCCCcc-EEEecCC
Confidence                                 001122456899999999999998 6999999988   9999999998776 555   5


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE-eCCCCC-eEEEEEcCCCCEEEEE---ECCCcEEEEECCC
Q 005235          538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL-ETGLKE-VSSIAIHPAGDNLIVG---SREGKLCWFDMDL  611 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l-~~~~~~-I~sl~~spdg~~L~sG---s~Dg~I~vwDl~~  611 (707)
                      |.+.|.+++|+|++.+|++++ |+.|++||+++++.+..+ ..|... +.+++|+|+|.+|++|   +.|+.|++||+..
T Consensus       175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~  254 (402)
T 2aq5_A          175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH  254 (402)
T ss_dssp             CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred             CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence            888999999999999999998 999999999999999988 677665 8999999999999999   7899999999998


Q ss_pred             CCcceEEee-cCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecccccCCCCCCcccceEEeeCC--CCCCCCCeeEEEEc
Q 005235          612 SSKPYRVLK-CHPKDITNVAFHRSYPLFA-SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH--TSSNGRGVMDCKFH  687 (707)
Q Consensus       612 ~~~~~~~l~-~h~~~I~~vafspdg~lla-Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh--~~~~~~gV~~l~fs  687 (707)
                      ...++.... .|...|.+++|+|++.+|+ +|+.||.|++|++.      +...  .+..+..|  ...    |.+++|+
T Consensus       255 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~------~~~~--~~~~l~~~~~~~~----v~~~~~s  322 (402)
T 2aq5_A          255 LEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT------SEAP--FLHYLSMFSSKES----QRGMGYM  322 (402)
T ss_dssp             CSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC------SSTT--CEEEEEEECCSSC----CSEEEEC
T ss_pred             ccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec------CCCc--ceEeecccccCCc----ccceEEe
Confidence            755555544 5778899999999999886 45579999999653      3321  13344443  354    9999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeC
Q 005235          688 PRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       688 pdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |++.++++  .++.+++|++
T Consensus       323 p~~~~~~s--~~~~~~~~~l  340 (402)
T 2aq5_A          323 PKRGLEVN--KCEIARFYKL  340 (402)
T ss_dssp             CGGGSCGG--GTEEEEEEEE
T ss_pred             ccccccee--cceeEEEEEc
Confidence            99998875  5679999984

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=4.5e-29  Score=275.95  Aligned_cols=266  Identities=15%  Similarity=0.223  Sum_probs=211.9

Q ss_pred             EEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEE
Q 005235          411 LRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR  490 (707)
Q Consensus       411 l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~  490 (707)
                      ...+.+.+.|++++|+|++...+++++.++.|++|++........                 ..+       .......+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------~~~-------~~~~~~~~  177 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------PSG-------ECQPDLRL  177 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------TTC-------CCCCSEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------ccc-------cCCCcEEe
Confidence            344555899999999998434666777899999999865311100                 000       01112245


Q ss_pred             eccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCcee------eeee-ccCCCeEEEEEeC-CCCEEEEEe-CC
Q 005235          491 LRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSH------RIPF-KLHGLPVSSVFHP-TRSIFFVST-KK  560 (707)
Q Consensus       491 ~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~------~~~~-~~~~~V~~v~fsp-d~~~l~v~s-dg  560 (707)
                      .+|...|.+++|+|++. +|++++.||   .|++|++......      ...+ .|.+.|.+++|+| ++.+|++++ ++
T Consensus       178 ~~h~~~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg  254 (430)
T 2xyi_A          178 RGHQKEGYGLSWNPNLNGYLLSASDDH---TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ  254 (430)
T ss_dssp             ECCSSCCCCEEECTTSTTEEEEECTTS---CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             cCCCCCeEEEEeCCCCCCeEEEEeCCC---eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence            68999999999999998 999999988   9999999874321      1345 7889999999999 677888887 89


Q ss_pred             eEEEEECCCC---eEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC
Q 005235          561 NIRVYDLLKQ---RLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP  636 (707)
Q Consensus       561 ~I~iwDl~~~---~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~  636 (707)
                      .|++||++++   +.+..+..|...|++++|+|++. +|++|+.||.|++||++....++..+..|...|++++|+|+++
T Consensus       255 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~  334 (430)
T 2xyi_A          255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE  334 (430)
T ss_dssp             EEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT
T ss_pred             eEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC
Confidence            9999999986   57778889999999999999997 6899999999999999986678999999999999999999985


Q ss_pred             -EEEEEeCCCcEEEEecccccCCCC-----CCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 005235          637 -LFASCSDDCTAYVFHGMVYSDLNQ-----NPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVIRLYCH  707 (707)
Q Consensus       637 -llaSgs~Dg~I~Vwd~~~~~Dl~~-----~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~IrlWdl  707 (707)
                       +|++++.||.|+||++........     ......+..+.+|...    |.+++|+|+++ +|++++.||.|+||++
T Consensus       335 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK----ISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC----EEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC----ceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence             799999999999998764221110     0001346778889887    99999999999 8899999999999984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=2.8e-29  Score=271.80  Aligned_cols=299  Identities=12%  Similarity=0.137  Sum_probs=206.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEe--------------cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLE--------------IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE  454 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~--------------~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~  454 (707)
                      .++++|+.||+|+||++.++.....+.              +...|.+++|+|++...+++++.++.|++|++.++....
T Consensus        57 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  136 (408)
T 4a11_B           57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD  136 (408)
T ss_dssp             CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce
Confidence            599999999999999999887655544              578999999999543578888889999999998875421


Q ss_pred             -cccccceeeeccc--------ccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEE
Q 005235          455 -QRRVKDLLHVETP--------TAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFM  523 (707)
Q Consensus       455 -~~~~~~v~~~~~~--------~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~I  523 (707)
                       ......+..+.+.        +++++.++.+.+|++...... .+..|...|.+++|+|++. .|++++.|+   .|++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg---~i~i  213 (408)
T 4a11_B          137 VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS---RVKL  213 (408)
T ss_dssp             EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTS---CEEE
T ss_pred             eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCC---cEEE
Confidence             1223333333332        677889999999999866543 4667999999999999999 588999988   9999


Q ss_pred             EECCCCceeeee---------------e-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC-----C
Q 005235          524 HQLSKKLSHRIP---------------F-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGL-----K  581 (707)
Q Consensus       524 wdl~~~~~~~~~---------------~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-----~  581 (707)
                      ||+.........               + .+.+.|.+++|+|++.+|++++ |+.|++||+.+++....+..+.     .
T Consensus       214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  293 (408)
T 4a11_B          214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK  293 (408)
T ss_dssp             EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred             EECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccc
Confidence            999876421111               1 5778899999999999999998 8999999999886654433221     1


Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCC
Q 005235          582 EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQN  661 (707)
Q Consensus       582 ~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~  661 (707)
                      .+........+..+++++.++.|++||+.++ .++..+.+|...|++++|+|++++|++|+.||.|+||++....     
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----  367 (408)
T 4a11_B          294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE-----  367 (408)
T ss_dssp             CCCCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred             cceeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC-----
Confidence            1222222344567777788999999999987 7889999999999999999999999999999999999664332     


Q ss_pred             CcccceEEeeCCCCCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 005235          662 PLIVPLEILRGHTSSNGRGVMDCKFHP-RQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       662 ~~~~pl~~l~gh~~~~~~gV~~l~fsp-dg~~L~s~g~Dg~IrlWdl  707 (707)
                       .   +.....+.       ....+.| ....+.+++.|+.+++|+.
T Consensus       368 -~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~W~~  403 (408)
T 4a11_B          368 -P---VPDDDETT-------TKSQLNPAFEDAWSSSDEEGGTSAWSH  403 (408)
T ss_dssp             -----------------------------------------------
T ss_pred             -c---cCCCCceE-------eccccccccceeecccCccCceeecCC
Confidence             1   22222221       1122333 2234456778999999973

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.4e-30  Score=282.46  Aligned_cols=277  Identities=15%  Similarity=0.119  Sum_probs=214.2

Q ss_pred             CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE-ec-CCcEEEEEEcc-CCCccEEEEEeCCeEEEEECCCCCchhcc
Q 005235          380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVL-EI-GEAIQYVAWNP-LPELPVLAVSVGQDVLILNTGLGNEEEQR  456 (707)
Q Consensus       380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l-~~-~~~V~~v~~sp-dg~~~lla~s~d~~V~lwd~~~~~~~~~~  456 (707)
                      ....|...+..+++++      +|+ .+|+++..+ .+ .+.|++|+|+| ++ ..|++++.|+.|+||++.+.....  
T Consensus        31 ~~~~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~--  100 (437)
T 3gre_A           31 DYKEFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGE--  100 (437)
T ss_dssp             GCGGGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTC--
T ss_pred             chhhcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCc--
Confidence            3334555666665544      488 578889888 55 69999999999 88 478888999999999975410000  


Q ss_pred             cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC---CCceee
Q 005235          457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS---KKLSHR  533 (707)
Q Consensus       457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~---~~~~~~  533 (707)
                                                 .........|...|.+++|+|++.+|++++.|+   .|++||+.   .+....
T Consensus       101 ---------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~  150 (437)
T 3gre_A          101 ---------------------------VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDG---QIIVLKVNHYQQESEVK  150 (437)
T ss_dssp             ---------------------------CCSCSEEEECSSCEEEEEECTTSSEEEEEETTS---EEEEEEEEEEEETTEEE
T ss_pred             ---------------------------ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCC---EEEEEEeccccCCceee
Confidence                                       000012336899999999999999999999998   99999994   333320


Q ss_pred             -------eee---c--cCCCeEEEE--EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC--CCCCeEEEEEcCCCCEEE
Q 005235          534 -------IPF---K--LHGLPVSSV--FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET--GLKEVSSIAIHPAGDNLI  596 (707)
Q Consensus       534 -------~~~---~--~~~~V~~v~--fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~--~~~~I~sl~~spdg~~L~  596 (707)
                             ..+   .  +...+.++.  +++++.+|++++ |+.|++||+.+++++..+..  |...|++++|+|++.+|+
T Consensus       151 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~  230 (437)
T 3gre_A          151 FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLI  230 (437)
T ss_dssp             EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEE
T ss_pred             ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEE
Confidence                   111   1  566777777  568899999998 89999999999999999998  788999999999999999


Q ss_pred             EEECCCcEEEEECCCCCcceEEee-cCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee
Q 005235          597 VGSREGKLCWFDMDLSSKPYRVLK-CHPKDITNVAFHR----SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR  671 (707)
Q Consensus       597 sGs~Dg~I~vwDl~~~~~~~~~l~-~h~~~I~~vafsp----dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~  671 (707)
                      +|+.||.|++||++++ .++..+. .|...|++++|+|    ++.+|++|+.||+|+|||+.      +...   +..+.
T Consensus       231 s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~------~~~~---~~~~~  300 (437)
T 3gre_A          231 LGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV------KGHC---QYAFI  300 (437)
T ss_dssp             EEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT------TTEE---EEEEE
T ss_pred             EEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC------CCcE---EEEEE
Confidence            9999999999999986 7788776 7888999996665    57799999999999999654      2222   33444


Q ss_pred             CCCCC----------------------CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          672 GHTSS----------------------NGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       672 gh~~~----------------------~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +|...                      +...|.+++|+ ++.+|++|+.||.|++||+
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~  357 (437)
T 3gre_A          301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL  357 (437)
T ss_dssp             SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred             cCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence            33210                      11239999999 7799999999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=8.1e-29  Score=268.35  Aligned_cols=259  Identities=11%  Similarity=0.071  Sum_probs=198.8

Q ss_pred             CCcEEEEEeCCC-------cEEEEeCCCCe--------EEEEEec---CCcEEEEEEccCCCccEEEEE-----------
Q 005235          387 ACYLEYKGSTDG-------TVRIWEVESGR--------CLRVLEI---GEAIQYVAWNPLPELPVLAVS-----------  437 (707)
Q Consensus       387 ~~~~l~sgs~Dg-------tVrIWd~~tg~--------~l~~l~~---~~~V~~v~~spdg~~~lla~s-----------  437 (707)
                      ++.+|++||.|.       .|+||++..+.        ....+..   ...|.+++++++   .+++++           
T Consensus        25 dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~---~~~~g~~~~~~~l~s~~  101 (365)
T 4h5i_A           25 NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG---IILVGCNENSTKITQGK  101 (365)
T ss_dssp             TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT---EEEEECCCCHHHHHHTS
T ss_pred             CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC---EEEEEECCCccEEEEec
Confidence            345899987654       49999987653        2222222   567888877654   255443           


Q ss_pred             eCCeEEEEECCCCCchhc-----------ccccceeeeccc-------ccccCCCCcEEEEecCCccceEEeccCCCeEE
Q 005235          438 VGQDVLILNTGLGNEEEQ-----------RRVKDLLHVETP-------TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS  499 (707)
Q Consensus       438 ~d~~V~lwd~~~~~~~~~-----------~~~~~v~~~~~~-------~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~  499 (707)
                      .++.+++|++......+.           .....+..++|+       +++++.+++|++|+..+........|.+.|.+
T Consensus       102 ~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~  181 (365)
T 4h5i_A          102 GNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKD  181 (365)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCE
T ss_pred             CCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEE
Confidence            467899999876533111           111223345554       34667899999999998877666779999999


Q ss_pred             EEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee-e-ccCCCeEEEEEeCCCCEEEEEe-CC----eEEEEECCCCeE
Q 005235          500 VEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP-F-KLHGLPVSSVFHPTRSIFFVST-KK----NIRVYDLLKQRL  572 (707)
Q Consensus       500 v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~-~-~~~~~V~~v~fspd~~~l~v~s-dg----~I~iwDl~~~~~  572 (707)
                      |+|+|+|++|++++.+    .+.+|+..++...... . .+...|.+++|+|++.++++++ ++    .+++|++.....
T Consensus       182 v~fspdg~~l~s~s~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~  257 (365)
T 4h5i_A          182 LHFSTDGKVVAYITGS----SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT  257 (365)
T ss_dssp             EEECTTSSEEEEECSS----CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred             EEEccCCceEEeccce----eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence            9999999999999865    4666666666554222 3 6788899999999999999987 65    688999876543


Q ss_pred             ----EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235          573 ----IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV-LKCHPKDITNVAFHRSYPLFASCSDDCTA  647 (707)
Q Consensus       573 ----~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~-l~~h~~~I~~vafspdg~llaSgs~Dg~I  647 (707)
                          ...+.+|...|++++|+|+|++||+|+.|+.|+|||+.++ +++.. +.+|...|++|+|||+|++|||||.|++|
T Consensus       258 ~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~-~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tv  336 (365)
T 4h5i_A          258 SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL-SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTI  336 (365)
T ss_dssp             EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC-cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeE
Confidence                4567789899999999999999999999999999999987 66766 57999999999999999999999999999


Q ss_pred             EEEecc
Q 005235          648 YVFHGM  653 (707)
Q Consensus       648 ~Vwd~~  653 (707)
                      +||++.
T Consensus       337 rvw~ip  342 (365)
T 4h5i_A          337 HIIKLP  342 (365)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.5e-30  Score=290.72  Aligned_cols=267  Identities=10%  Similarity=0.075  Sum_probs=202.3

Q ss_pred             CCeEEEEEecCCcEEEEEEccCCC--------ccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEE
Q 005235          407 SGRCLRVLEIGEAIQYVAWNPLPE--------LPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIV  478 (707)
Q Consensus       407 tg~~l~~l~~~~~V~~v~~spdg~--------~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~  478 (707)
                      ++++...+...+.|.+|+|+|++.        ..|++++.++..   +..          ..   ..-.+++++.+++|+
T Consensus       123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~---~~~----------~~---~~~~laS~s~D~tI~  186 (524)
T 2j04_B          123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD---EPL----------NE---HLEMFDKEKHSSCIQ  186 (524)
T ss_dssp             CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------CEEEE
T ss_pred             CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC---Ccc----------ch---hhhhhccCCCCceEE
Confidence            456666777789999999999861        244444444321   000          00   000146778899999


Q ss_pred             EEecCCccce-----EEeccCCCeEEEEEcCC------CCEEEEEeCCCCccEEEEEECCCCcee----------eeee-
Q 005235          479 SWLQHDKLDG-----IRLRHFKMVSSVEWHRR------GDYLSTVMPAGESRAIFMHQLSKKLSH----------RIPF-  536 (707)
Q Consensus       479 iW~~~~~~~~-----~~~~h~~~V~~v~~sp~------g~~lat~s~dg~~~~V~Iwdl~~~~~~----------~~~~-  536 (707)
                      +|++.+....     .+.+|.+.|.+|+|+|+      +.+||+++.|+   +|+||++..+...          ...+ 
T Consensus       187 iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg---tvrlWd~~~~~~~~~~~~~~~~p~~~l~  263 (524)
T 2j04_B          187 IFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEG---TINFLEIIDNATDVHVFKMCEKPSLTLS  263 (524)
T ss_dssp             EEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTS---CEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred             EEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCC---eEEEEEcCCCccccccceeecCceEEEE
Confidence            9998765432     24567899999999996      57999999998   9999999876421          0245 


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC-eEEEEEeCCCCCeEEE--EEcCCC-CEEEEEECCCcEEEEECCC
Q 005235          537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ-RLIKKLETGLKEVSSI--AIHPAG-DNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~-~~~~~l~~~~~~I~sl--~~spdg-~~L~sGs~Dg~I~vwDl~~  611 (707)
                      .|.+.|.+++|+|++ .|++|+ ||+|++||+.++ .+...+.+|...|.+|  +|+|+| .+||+||.|++|+|||+++
T Consensus       264 ~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~  342 (524)
T 2j04_B          264 LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD  342 (524)
T ss_dssp             CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred             cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence            788999999999865 788888 999999999876 4556788999999999  578888 8999999999999999987


Q ss_pred             CCcceEEeecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          612 SSKPYRVLKCHPK--DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       612 ~~~~~~~l~~h~~--~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      + ++..++.+|..  .|.+|+|+|+++.|++++.|++|+||+++      ...   ++..+.+|...    |++|+|+|+
T Consensus       343 ~-~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~------~~~---~~~~l~gH~~~----V~sva~Sp~  408 (524)
T 2j04_B          343 I-ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR------AAF---AVHPLVSRETT----ITAIGVSRL  408 (524)
T ss_dssp             H-HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT------CTT---CCEEEEECSSC----EEEEECCSS
T ss_pred             C-CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc------ccc---cceeeecCCCc----eEEEEeCCC
Confidence            6 55666777753  58899999999999999999999999654      333   25678899987    999999999


Q ss_pred             CCEEEEEeCCCcEEEEeC
Q 005235          690 QPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       690 g~~L~s~g~Dg~IrlWdl  707 (707)
                      +++|+||+.||+|+||++
T Consensus       409 g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          409 HPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             CCBCEEEETTTEEECCBS
T ss_pred             CCeEEEEECCCEEEEEec
Confidence            999999999999999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=2.1e-28  Score=287.20  Aligned_cols=246  Identities=15%  Similarity=0.164  Sum_probs=204.6

Q ss_pred             EEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe
Q 005235          413 VLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL  491 (707)
Q Consensus       413 ~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~  491 (707)
                      .+.. .+.|++|+|+|++...|++++.|++|++|++.......                             ......+.
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-----------------------------~~~~~~~~  427 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-----------------------------GVAQRRLT  427 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-----------------------------CEEEEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-----------------------------ccccceec
Confidence            4544 88999999999875568888999999999986542110                             00112366


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK  569 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~  569 (707)
                      +|...|.+++|+|+|++|++++.|+   .|+|||+.++... ..+ .|.+.|.+++|+|++.+|++++ |++|++||+..
T Consensus       428 ~h~~~v~~v~~s~~g~~l~sgs~Dg---~v~vwd~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~  503 (694)
T 3dm0_A          428 GHSHFVEDVVLSSDGQFALSGSWDG---ELRLWDLAAGVST-RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG  503 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEE-EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCC---cEEEEECCCCcce-eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC
Confidence            8999999999999999999999998   9999999999887 777 9999999999999999999998 99999999875


Q ss_pred             CeEEEEE---eCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235          570 QRLIKKL---ETGLKEVSSIAIHPAG--DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD  644 (707)
Q Consensus       570 ~~~~~~l---~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D  644 (707)
                      .......   .+|...|.+++|+|++  ..|++|+.|+.|++||+... ++...+.+|...|++++|+|++.+|++|+.|
T Consensus       504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D  582 (694)
T 3dm0_A          504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKD  582 (694)
T ss_dssp             CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            5433322   3577889999999987  68999999999999999876 7788999999999999999999999999999


Q ss_pred             CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          645 CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       645 g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |+|+|||+      .+...   +..+..+. .    |.+++|+|++.+|++++ |+.|+|||+
T Consensus       583 g~i~iwd~------~~~~~---~~~~~~~~-~----v~~~~~sp~~~~l~~~~-~~~i~iwd~  630 (694)
T 3dm0_A          583 GVVLLWDL------AEGKK---LYSLEANS-V----IHALCFSPNRYWLCAAT-EHGIKIWDL  630 (694)
T ss_dssp             SBCEEEET------TTTEE---EECCBCSS-C----EEEEEECSSSSEEEEEE-TTEEEEEET
T ss_pred             CeEEEEEC------CCCce---EEEecCCC-c----EEEEEEcCCCcEEEEEc-CCCEEEEEC
Confidence            99999954      33332   44555443 3    99999999999887766 566999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1e-28  Score=264.59  Aligned_cols=241  Identities=16%  Similarity=0.149  Sum_probs=202.4

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .++|.+++|+|++. .+++++.++.|++|++.++...                                ....+.+|...
T Consensus         8 ~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~--------------------------------~~~~~~~h~~~   54 (372)
T 1k8k_C            8 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWV--------------------------------QVHELKEHNGQ   54 (372)
T ss_dssp             SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEE--------------------------------EEEEEECCSSC
T ss_pred             CCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEE--------------------------------eeeeecCCCCc
Confidence            67899999999993 5667768999999997654100                                11235589999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--  571 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--  571 (707)
                      |.+++|+|++++|++++.|+   .|++|++.++.... ..+ .+...|.+++|+|++.+|++++ ++.|++||+..+.  
T Consensus        55 v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  131 (372)
T 1k8k_C           55 VTGVDWAPDSNRIVTCGTDR---NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW  131 (372)
T ss_dssp             EEEEEEETTTTEEEEEETTS---CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             ccEEEEeCCCCEEEEEcCCC---eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence            99999999999999999988   99999998876441 233 7889999999999999999998 8999999998765  


Q ss_pred             -EEEEE-eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-----------------CCcceEEeecCCCCEEEEEEc
Q 005235          572 -LIKKL-ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL-----------------SSKPYRVLKCHPKDITNVAFH  632 (707)
Q Consensus       572 -~~~~l-~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~-----------------~~~~~~~l~~h~~~I~~vafs  632 (707)
                       ....+ ..|...|.+++|+|++.+|++|+.||.|++||+..                 ...++..+..|...|.+++|+
T Consensus       132 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  211 (372)
T 1k8k_C          132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS  211 (372)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred             eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence             23333 56788999999999999999999999999999641                 236788888999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          633 RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       633 pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |++.+|++++.||.|++||+.      +..   ++..+.+|...    |.+++|+|++.+|+++ .|+.|++|++
T Consensus       212 ~~~~~l~~~~~d~~i~i~d~~------~~~---~~~~~~~~~~~----v~~~~~~~~~~~l~~~-~d~~i~i~~~  272 (372)
T 1k8k_C          212 ANGSRVAWVSHDSTVCLADAD------KKM---AVATLASETLP----LLAVTFITESSLVAAG-HDCFPVLFTY  272 (372)
T ss_dssp             SSSSEEEEEETTTEEEEEEGG------GTT---EEEEEECSSCC----EEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEECC------CCc---eeEEEccCCCC----eEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence            999999999999999999654      333   47888899877    9999999999988877 8999999984

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=6.6e-28  Score=254.95  Aligned_cols=252  Identities=15%  Similarity=0.132  Sum_probs=207.9

Q ss_pred             CCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCc
Q 005235          407 SGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDK  485 (707)
Q Consensus       407 tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~  485 (707)
                      +..+..+|++ .+.|++|+|+|++...|++++.|++|+||++.......                             ..
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-----------------------------~~   77 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY-----------------------------GI   77 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-----------------------------EE
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-----------------------------ce
Confidence            3445567776 89999999999854468888999999999987643210                             00


Q ss_pred             cceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235          486 LDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIR  563 (707)
Q Consensus       486 ~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~  563 (707)
                      ....+.+|...|.+++|+|+|.+|++++.|+   .|++|+....... ... .+...+..+.+++++.+|++++ |+.++
T Consensus        78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~---~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~  153 (340)
T 4aow_A           78 PQRALRGHSHFVSDVVISSDGQFALSGSWDG---TLRLWDLTTGTTT-RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK  153 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEE-EEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEcccc---cceEEeeccccee-eeecCCCCceeEEEEeecCccceeecCCCeEE
Confidence            1123568999999999999999999999998   9999999988876 555 7788899999999999999998 99999


Q ss_pred             EEECCCCeE-EEEEeCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235          564 VYDLLKQRL-IKKLETGLKEVSSIAIHPAG--DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS  640 (707)
Q Consensus       564 iwDl~~~~~-~~~l~~~~~~I~sl~~spdg--~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS  640 (707)
                      +||+..... ...+.+|...+.+++|++++  .++++++.|+.|++||+.++ ++...+.+|...|++++|+|++++|++
T Consensus       154 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s  232 (340)
T 4aow_A          154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVSPDGSLCAS  232 (340)
T ss_dssp             EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEEEEEECCCCCEEEE
Confidence            999987644 34456788889999998875  57889999999999999977 788899999999999999999999999


Q ss_pred             EeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          641 CSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       641 gs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |+.||+|+|||+.      +..   ++..+.++..     |.+++|+|++.++ +++.|+.|++||+
T Consensus       233 ~s~Dg~i~iwd~~------~~~---~~~~~~~~~~-----v~~~~~~~~~~~~-~~~~d~~i~iwd~  284 (340)
T 4aow_A          233 GGKDGQAMLWDLN------EGK---HLYTLDGGDI-----INALCFSPNRYWL-CAATGPSIKIWDL  284 (340)
T ss_dssp             EETTCEEEEEETT------TTE---EEEEEECSSC-----EEEEEECSSSSEE-EEEETTEEEEEET
T ss_pred             EeCCCeEEEEEec------cCc---eeeeecCCce-----EEeeecCCCCcee-eccCCCEEEEEEC
Confidence            9999999999543      333   3666776653     9999999987654 5667999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=8.6e-28  Score=266.95  Aligned_cols=270  Identities=10%  Similarity=0.062  Sum_probs=223.8

Q ss_pred             EEEec-C-CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc--hhcccccceeeeccc----ccccCCCCcEEEEecC
Q 005235          412 RVLEI-G-EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE--EEQRRVKDLLHVETP----TAPDDNMASIVSWLQH  483 (707)
Q Consensus       412 ~~l~~-~-~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~--~~~~~~~~v~~~~~~----~~~~~~d~~i~iW~~~  483 (707)
                      ..+.+ . ..+.++.++++   .+++++.|+.|++||+.++..  .+.+|...+.++.+.    +++++.++.|++|+..
T Consensus       115 ~~l~~h~~~v~~~~~~~~~---~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             EEEECCSSSCEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred             EEEcCCCCCcEEEEEECCC---EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence            34444 3 34577777542   689999999999999988764  445688888888876    8899999999999998


Q ss_pred             Cccce-EEeccCCCeEEEEEc--CCCCEEEEEeCCCCccEEEEEECCCCcee----------------------eeee-c
Q 005235          484 DKLDG-IRLRHFKMVSSVEWH--RRGDYLSTVMPAGESRAIFMHQLSKKLSH----------------------RIPF-K  537 (707)
Q Consensus       484 ~~~~~-~~~~h~~~V~~v~~s--p~g~~lat~s~dg~~~~V~Iwdl~~~~~~----------------------~~~~-~  537 (707)
                      +.... .+.+|...|.+++|+  +++.+|++++.|+   .|++|++.+....                      ...+ .
T Consensus       192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN---TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTS---CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCC---cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            76544 366799999999998  5789999999998   9999999876532                      0234 6


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235          538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                      |...|.++  ++++.+|++++ |+.|++||+.+++++..+.+|...|.+++|+|+|.+|++|+.||.|++||+.++ +++
T Consensus       269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~  345 (464)
T 3v7d_B          269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-ELM  345 (464)
T ss_dssp             CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEE
T ss_pred             ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEE
Confidence            67777766  67788999998 999999999999999999999999999999999999999999999999999987 789


Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235          617 RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA  696 (707)
Q Consensus       617 ~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~  696 (707)
                      ..+.+|...|.+++|+  +.+|++|+.||+|++|++.      +...   ...+ .|...    +..++|+|++.+|+++
T Consensus       346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~------~~~~---~~~~-~~~~~----~~~~~~~~~~~~l~~~  409 (464)
T 3v7d_B          346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN------DYSR---KFSY-HHTNL----SAITTFYVSDNILVSG  409 (464)
T ss_dssp             EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETT------TCCE---EEEE-ECTTC----CCEEEEEECSSEEEEE
T ss_pred             EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECC------CCce---eeee-cCCCC----ccEEEEEeCCCEEEEe
Confidence            9999999999999997  5799999999999999654      3222   2222 23333    8889999999999999


Q ss_pred             eCCCcEEEEeC
Q 005235          697 GADSVIRLYCH  707 (707)
Q Consensus       697 g~Dg~IrlWdl  707 (707)
                      + ||.|++||+
T Consensus       410 ~-dg~i~iwd~  419 (464)
T 3v7d_B          410 S-ENQFNIYNL  419 (464)
T ss_dssp             E-TTEEEEEET
T ss_pred             c-CCeEEEEEC
Confidence            8 999999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.9e-30  Score=278.41  Aligned_cols=241  Identities=14%  Similarity=0.097  Sum_probs=191.5

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|++++|+|++. .|++++.++.|++|++.++..                                .....+.+|...
T Consensus        11 ~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~--------------------------------~~~~~~~~h~~~   57 (377)
T 3dwl_C           11 PKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGW--------------------------------KHARTFSDHDKI   57 (377)
T ss_dssp             SSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEE--------------------------------EECCCBCCCSSC
T ss_pred             CCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCce--------------------------------EEEEEEecCCce
Confidence            67899999999993 666777899999999765410                                011124579999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc---eeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL---SHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR  571 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~---~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~  571 (707)
                      |.+++|+|+|++|++++.|+   .|++||+.++.   .. ..+ .|...|.+++|+|++.+|++++ |+.|++||+.+++
T Consensus        58 v~~~~~s~~~~~l~s~s~d~---~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  133 (377)
T 3dwl_C           58 VTCVDWAPKSNRIVTCSQDR---NAYVYEKRPDGTWKQT-LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN  133 (377)
T ss_dssp             EEEEEECTTTCCEEEEETTS---SEEEC------CCCCE-EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred             EEEEEEeCCCCEEEEEeCCC---eEEEEEcCCCCceeee-eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence            99999999999999999988   99999999876   33 455 8999999999999999999998 8999999999876


Q ss_pred             ---EEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-----------------CcceEEeecCCCCEEEEE
Q 005235          572 ---LIKKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS-----------------SKPYRVLKCHPKDITNVA  630 (707)
Q Consensus       572 ---~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~-----------------~~~~~~l~~h~~~I~~va  630 (707)
                         +...+.. |...|.+++|+|++.+|++|+.|+.|++||+...                 ..++..+ +|...|++++
T Consensus       134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  212 (377)
T 3dwl_C          134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG  212 (377)
T ss_dssp             -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred             cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence               4677877 8899999999999999999999999999998521                 2455556 8999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecccccCCCCCCc-ccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPL-IVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~-~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      |+|++++||+|+.||+|+||++.      +... ...+..+.+|...    |.+++|+|++.+|++++.|+.+ +|+
T Consensus       213 ~sp~~~~l~~~~~d~~i~iwd~~------~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~~~~~-~~~  278 (377)
T 3dwl_C          213 FSPSGNALAYAGHDSSVTIAYPS------APEQPPRALITVKLSQLP----LRSLLWANESAIVAAGYNYSPI-LLQ  278 (377)
T ss_dssp             ECTTSSCEEEEETTTEEC-CEEC------STTSCEEECCCEECSSSC----EEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred             ECCCCCEEEEEeCCCcEEEEECC------CCCCcceeeEeecCCCCc----eEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence            99999999999999999999654      2221 1125678899887    9999999999999999877766 654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.3e-28  Score=262.56  Aligned_cols=251  Identities=12%  Similarity=0.086  Sum_probs=206.9

Q ss_pred             CCcEEEEEEccC---CCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc
Q 005235          417 GEAIQYVAWNPL---PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH  493 (707)
Q Consensus       417 ~~~V~~v~~spd---g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h  493 (707)
                      .+.|.+|+|+|+   +...+++++.++.|++|++.++...                        ..+..     .....|
T Consensus        18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~------------------------~~~~~-----~~~~~~   68 (366)
T 3k26_A           18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI------------------------RLLQS-----YVDADA   68 (366)
T ss_dssp             CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE------------------------EEEEE-----EECSCT
T ss_pred             CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE------------------------Eeeee-----ccccCC
Confidence            789999999984   4446888899999999998654211                        11100     001137


Q ss_pred             CCCeEEEEEcCC----CCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEE
Q 005235          494 FKMVSSVEWHRR----GDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHP-TRSIFFVST-KKNIRVYD  566 (707)
Q Consensus       494 ~~~V~~v~~sp~----g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwD  566 (707)
                      ...|.+++|+|+    |.+|++++.|+   .|++||+.++... ..+ .|...|.+++|+| ++.+|++++ |+.|++||
T Consensus        69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           69 DENFYTCAWTYDSNTSHPLLAVAGSRG---IIRIINPITMQCI-KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN  144 (366)
T ss_dssp             TCCEEEEEEEECTTTCCEEEEEEETTC---EEEEECTTTCCEE-EEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             CCcEEEEEeccCCCCCCCEEEEecCCC---EEEEEEchhceEe-eeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            788999999999    67999999998   9999999998887 777 7999999999999 899999998 89999999


Q ss_pred             CCCCeEEEEE---eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce---------------------------
Q 005235          567 LLKQRLIKKL---ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY---------------------------  616 (707)
Q Consensus       567 l~~~~~~~~l---~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~---------------------------  616 (707)
                      +.+++.+..+   ..|...|.+++|+|++.+|++|+.||.|++||+.++ ...                           
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCc
Confidence            9999999888   678899999999999999999999999999999865 322                           


Q ss_pred             -EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC-----CCCCcccceEEeeCCCCCCCCCeeEEEEcCC-
Q 005235          617 -RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL-----NQNPLIVPLEILRGHTSSNGRGVMDCKFHPR-  689 (707)
Q Consensus       617 -~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl-----~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd-  689 (707)
                       ..+.+|...|.+++|+  +.+|++++.||.|++|+.......     .......++..+.+|...    |.+++|+|+ 
T Consensus       224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~  297 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD----IWYMRFSMDF  297 (366)
T ss_dssp             EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC----SSCCCCEECT
T ss_pred             cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc----EEEEEEcCCC
Confidence             2334499999999999  779999999999999986533210     011222457788899887    999999999 


Q ss_pred             -CCEEEEEeCCCcEEEEeC
Q 005235          690 -QPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       690 -g~~L~s~g~Dg~IrlWdl  707 (707)
                       +.+|++++.||.|++|++
T Consensus       298 ~~~~l~~~~~dg~i~vwd~  316 (366)
T 3k26_A          298 WQKMLALGNQVGKLYVWDL  316 (366)
T ss_dssp             TSSEEEEECTTSCEEEEEC
T ss_pred             CCcEEEEEecCCcEEEEEC
Confidence             999999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=2.3e-28  Score=264.63  Aligned_cols=256  Identities=13%  Similarity=0.137  Sum_probs=201.1

Q ss_pred             EEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEE
Q 005235          402 IWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSW  480 (707)
Q Consensus       402 IWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW  480 (707)
                      +|++.+.+....+.. .+.|.+++|+|++...|++++.|+.|++|++.++...                        ...
T Consensus        57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------~~~  112 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT------------------------SFI  112 (383)
T ss_dssp             HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE------------------------EEE
T ss_pred             cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc------------------------eee
Confidence            444556666666665 7899999999998447888889999999998764221                        000


Q ss_pred             ecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee----ccCCCeEEEEEeCCCCEEE
Q 005235          481 LQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFHPTRSIFF  555 (707)
Q Consensus       481 ~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fspd~~~l~  555 (707)
                              ...+|...|.+++|+| ++.+|++++.|+   .|++||+.+...  ..+    .+...|.+++|+|++.+|+
T Consensus       113 --------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~  179 (383)
T 3ei3_B          113 --------QGMGPGDAITGMKFNQFNTNQLFVSSIRG---ATTLRDFSGSVI--QVFAKTDSWDYWYCCVDVSVSRQMLA  179 (383)
T ss_dssp             --------CCCSTTCBEEEEEEETTEEEEEEEEETTT---EEEEEETTSCEE--EEEECCCCSSCCEEEEEEETTTTEEE
T ss_pred             --------ecCCcCCceeEEEeCCCCCCEEEEEeCCC---EEEEEECCCCce--EEEeccCCCCCCeEEEEECCCCCEEE
Confidence                    1236999999999999 789999999988   999999996443  344    3347899999999999999


Q ss_pred             EEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC---CcceEEeecCCCCEEEEE
Q 005235          556 VST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLS---SKPYRVLKCHPKDITNVA  630 (707)
Q Consensus       556 v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~---~~~~~~l~~h~~~I~~va  630 (707)
                      +++ |+.|++||+ +++.+..+..|...|.+++|+|++. +|++|+.|+.|++||+.+.   ..++..+ +|...|++++
T Consensus       180 ~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~  257 (383)
T 3ei3_B          180 TGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAY  257 (383)
T ss_dssp             EEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEE
T ss_pred             EECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEE
Confidence            998 899999999 5778889999999999999999999 9999999999999999873   2455555 6999999999


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC-------CC------CCCCeeEEEEcCCCCEEEEE
Q 005235          631 FHR-SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT-------SS------NGRGVMDCKFHPRQPWLFTA  696 (707)
Q Consensus       631 fsp-dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~-------~~------~~~gV~~l~fspdg~~L~s~  696 (707)
                      |+| ++.+|++++.||.|+||++...      ..   +..+.+|.       ..      ....+..++|+|++.+  ++
T Consensus       258 ~s~~~~~~l~~~~~d~~i~iwd~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~  326 (383)
T 3ei3_B          258 FNPTDSTKLLTTDQRNEIRVYSSYDW------SK---PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LL  326 (383)
T ss_dssp             ECTTTSCEEEEEESSSEEEEEETTBT------TS---CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CT
T ss_pred             EcCCCCCEEEEEcCCCcEEEEECCCC------cc---ccccccccccccccccceEEeccCCCCceEEEecCCccc--cc
Confidence            999 9999999999999999966432      22   23333332       11      0011444566666655  67


Q ss_pred             eCCCcEEEEeC
Q 005235          697 GADSVIRLYCH  707 (707)
Q Consensus       697 g~Dg~IrlWdl  707 (707)
                      +.||+|+|||+
T Consensus       327 s~d~~i~iwd~  337 (383)
T 3ei3_B          327 NDKRTIDIYDA  337 (383)
T ss_dssp             TCCCCEEEEET
T ss_pred             CCCCeEEEEec
Confidence            78999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.5e-28  Score=267.98  Aligned_cols=274  Identities=10%  Similarity=0.076  Sum_probs=215.1

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCe---EEEEEecC-------------------------------------------
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGR---CLRVLEIG-------------------------------------------  417 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~---~l~~l~~~-------------------------------------------  417 (707)
                      |..++.+++++ .++.|++||+.+|+   .+..+...                                           
T Consensus        12 ~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (450)
T 2vdu_B           12 TSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAK   90 (450)
T ss_dssp             ECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------------
T ss_pred             ecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCcc
Confidence            33445566665 57899999999998   77666531                                           


Q ss_pred             ------------CcEEEEEEccCCCccE-EEEEeCCeEEEEECC--CCCchhcccccceeeecccccccCCCCcEEEEec
Q 005235          418 ------------EAIQYVAWNPLPELPV-LAVSVGQDVLILNTG--LGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQ  482 (707)
Q Consensus       418 ------------~~V~~v~~spdg~~~l-la~s~d~~V~lwd~~--~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~  482 (707)
                                  +.|.+++|+|++. .| ++++.|+.|++|++.  ++..                        +..+  
T Consensus        91 ~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~dg~v~iwd~~~~~~~~------------------------~~~~--  143 (450)
T 2vdu_B           91 VPSPGLGAPPIYSYIRNLRLTSDES-RLIACADSDKSLLVFDVDKTSKNV------------------------LKLR--  143 (450)
T ss_dssp             ---------CCCCCEEEEEECTTSS-EEEEEEGGGTEEEEEEECSSSSSC------------------------EEEE--
T ss_pred             ccCCCCCCCccCCceEEEEEcCCCC-EEEEEECCCCeEEEEECcCCCCce------------------------eeee--
Confidence                        1599999999994 44 556688999999976  3311                        1111  


Q ss_pred             CCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee----ee-ccCCCeEEEEEeCC---CCEE
Q 005235          483 HDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI----PF-KLHGLPVSSVFHPT---RSIF  554 (707)
Q Consensus       483 ~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~----~~-~~~~~V~~v~fspd---~~~l  554 (707)
                            ....|...|.+++|+|+|.+|++++.++   .|.+|++...... .    .+ .|.+.|.+++|+|+   +.+|
T Consensus       144 ------~~~~~~~~v~~~~~sp~~~~l~~~~~~g---~v~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~l  213 (450)
T 2vdu_B          144 ------KRFCFSKRPNAISIAEDDTTVIIADKFG---DVYSIDINSIPEE-KFTQEPILGHVSMLTDVHLIKDSDGHQFI  213 (450)
T ss_dssp             ------EEEECSSCEEEEEECTTSSEEEEEETTS---EEEEEETTSCCCS-SCCCCCSEECSSCEEEEEEEECTTSCEEE
T ss_pred             ------ecccCCCCceEEEEcCCCCEEEEEeCCC---cEEEEecCCcccc-cccceeeecccCceEEEEEcCCCCCCcEE
Confidence                  1125778999999999999999999988   9999999877654 3    55 88999999999999   9899


Q ss_pred             EEEe-CCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec-----------
Q 005235          555 FVST-KKNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC-----------  621 (707)
Q Consensus       555 ~v~s-dg~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-----------  621 (707)
                      ++++ |+.|++||+.+++++.. +.+|...|.+++|+ +|.+|++|+.|+.|++||+.++ +++..+..           
T Consensus       214 ~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~  291 (450)
T 2vdu_B          214 ITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQ  291 (450)
T ss_dssp             EEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTT
T ss_pred             EEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhc
Confidence            9998 89999999999888877 55888999999999 9999999999999999999987 66676653           


Q ss_pred             --------------CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE
Q 005235          622 --------------HPKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF  686 (707)
Q Consensus       622 --------------h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f  686 (707)
                                    +...|.+++|+|++++|++++ .|+.|+||++.   + .......++..+.+| ..    |.+++|
T Consensus       292 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~---~-~~~~~l~~~~~~~~~-~~----v~~~~~  362 (450)
T 2vdu_B          292 HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMS---E-KQKGDLALKQIITFP-YN----VISLSA  362 (450)
T ss_dssp             SBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEEC---S-SSTTCEEEEEEEECS-SC----EEEEEE
T ss_pred             ccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEec---c-CCCCceeeccEeccC-Cc----eEEEEe
Confidence                          245799999999999999998 89999999651   0 233333567788888 44    999999


Q ss_pred             cCCCCEEEEE-eC------CCcEEEEeC
Q 005235          687 HPRQPWLFTA-GA------DSVIRLYCH  707 (707)
Q Consensus       687 spdg~~L~s~-g~------Dg~IrlWdl  707 (707)
                      +|++ .++++ +.      +..|.+|.+
T Consensus       363 ~~~~-~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          363 HNDE-FQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             ETTE-EEEEECCTTCCSSCCCSEEEEEE
T ss_pred             cCCc-EEEEEecccCCCCCCcceEEEEE
Confidence            9964 44444 32      556888863

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.9e-28  Score=261.77  Aligned_cols=290  Identities=11%  Similarity=0.055  Sum_probs=202.9

Q ss_pred             EEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccce--eeeccc----ccccCCC
Q 005235          402 IWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDL--LHVETP----TAPDDNM  474 (707)
Q Consensus       402 IWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v--~~~~~~----~~~~~~d  474 (707)
                      ||.+.+.+.+..+.. .+.|.+|+|+|+|  .+++++.++.+++|++.++..........+  ....+.    .++++.+
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg--~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQ--SCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK   80 (355)
T ss_dssp             ----------------CCCCCEEEECTTS--SEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred             cccccccCCccccccCCCceEEEEECCCC--CEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence            566677777665554 7899999999999  577777777899999887644332221222  222222    3567778


Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC-ceeeeeeccCCCeEEEEEeCCCCE
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK-LSHRIPFKLHGLPVSSVFHPTRSI  553 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~-~~~~~~~~~~~~V~~v~fspd~~~  553 (707)
                      +.+++|+...+.......+...|.+++|++++  ++++. ++   .|+||++.+. ... ..+..  ....+++++  .+
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~-~~---~i~i~d~~~~~~~~-~~~~~--~~~~~~~s~--~~  149 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSY-GD---VISVFKFGNPWKRI-TDDIR--FGGVCEFSN--GL  149 (355)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEEE-TT---EEEEEESSTTCCBS-SCCEE--EEEEEEEET--TE
T ss_pred             cEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEEE-cC---EEEEEECCCCceee-EEecc--CCceEEEEc--cE
Confidence            89999999877766666688899999998764  44443 45   8999999987 444 45532  455667777  66


Q ss_pred             EEEE--e-CCeEEEEECCCCe----------------EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCc-EEEEECCCCC
Q 005235          554 FFVS--T-KKNIRVYDLLKQR----------------LIKKLETGLKEVSSIAIHPAGDNLIVGSREGK-LCWFDMDLSS  613 (707)
Q Consensus       554 l~v~--s-dg~I~iwDl~~~~----------------~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~-I~vwDl~~~~  613 (707)
                      ++++  + +|.|++||+.++.                .+..+.+|...|++++|+|+|.+|++|+.|++ |++||+.++ 
T Consensus       150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-  228 (355)
T 3vu4_A          150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-  228 (355)
T ss_dssp             EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-
T ss_pred             EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-
Confidence            6664  4 8999999999765                26788999999999999999999999999998 999999987 


Q ss_pred             cceEEee-c-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccc------------eEEeeCCCCCCCC
Q 005235          614 KPYRVLK-C-HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVP------------LEILRGHTSSNGR  679 (707)
Q Consensus       614 ~~~~~l~-~-h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~p------------l~~l~gh~~~~~~  679 (707)
                      +++..+. + |...|++++|+|++++|++|+.|++|+||++......... ....            +..+.-... ...
T Consensus       229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  306 (355)
T 3vu4_A          229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH-ALKGWINMKYFQSEWSLCNFKLSVD-KHV  306 (355)
T ss_dssp             CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE-ETTTTEECCCCCCSSCSEEEECCCC-TTC
T ss_pred             cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc-cccceeeccccccccceeEEEeccC-CCC
Confidence            6788887 5 9999999999999999999999999999977532110000 0000            000000000 001


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          680 GVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       680 gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ....++|++++..|++++.||.+++|++
T Consensus       307 ~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          307 RGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             CCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             CceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            1467999999999999999999999974

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.4e-28  Score=265.05  Aligned_cols=224  Identities=14%  Similarity=0.193  Sum_probs=193.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++|+.||.|+|||+.+++++..+.. ...|.+++|+++   .+++++.++.|++|++.....               
T Consensus       147 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~---------------  208 (401)
T 4aez_A          147 SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANH---------------  208 (401)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSSC---------------
T ss_pred             CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC---EEEEEcCCCCEEEEecccCcc---------------
Confidence            5899999999999999999999998876 889999999543   689999999999999864321               


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                        ....+.+|...|.+++|+|++.+|++++.|+   .|++||+.+.... ..+ .+...|.+++
T Consensus       209 ------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~-~~~~~~~~~v~~~~  266 (401)
T 4aez_A          209 ------------------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDN---VVQIWDARSSIPK-FTKTNHNAAVKAVA  266 (401)
T ss_dssp             ------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTCSSEE-EEECCCSSCCCEEE
T ss_pred             ------------------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC---eEEEccCCCCCcc-EEecCCcceEEEEE
Confidence                              1123568999999999999999999999988   9999999998877 777 8899999999


Q ss_pred             EeCCCC-EEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE--ECCCcEEEEECCCCC-cceEEe
Q 005235          547 FHPTRS-IFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG--SREGKLCWFDMDLSS-KPYRVL  619 (707)
Q Consensus       547 fspd~~-~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG--s~Dg~I~vwDl~~~~-~~~~~l  619 (707)
                      |+|++. ++++++   |+.|++||+.+++++..+.. ...|.+++|+|+|.+|+++  +.||.|++||+.++. .....+
T Consensus       267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~  345 (401)
T 4aez_A          267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI  345 (401)
T ss_dssp             ECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE
T ss_pred             ECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe
Confidence            999765 555554   89999999999999988874 4789999999999999994  489999999998752 233447


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          620 KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       620 ~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .+|...|.+++|+|++++|++++.||.|+||++.
T Consensus       346 ~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          346 PAHDTRVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            7999999999999999999999999999999654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=4e-27  Score=255.09  Aligned_cols=262  Identities=12%  Similarity=0.114  Sum_probs=214.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEE-EEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVL-AVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~ll-a~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++++.|++|++||+.+++++..+.....+.+++|+|++. .++ +++.++.|++||+.++..               
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~d~~i~v~d~~~~~~---------------   66 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGT-KVYVANAHSNDVSIIDTATNNV---------------   66 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS-EEEEEEGGGTEEEEEETTTTEE---------------
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCC-EEEEECCCCCeEEEEECCCCeE---------------
Confidence            478899999999999999999999999888899999999994 453 444789999999766421               


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeeccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~  546 (707)
                                          .....+...+.+++|+|+|++|++++ .++   .|.+||+.++... ..+.+...+.+++
T Consensus        67 --------------------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~---~v~v~d~~~~~~~-~~~~~~~~~~~~~  122 (391)
T 1l0q_A           67 --------------------IATVPAGSSPQGVAVSPDGKQVYVTNMASS---TLSVIDTTSNTVA-GTVKTGKSPLGLA  122 (391)
T ss_dssp             --------------------EEEEECSSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTTEEE-EEEECSSSEEEEE
T ss_pred             --------------------EEEEECCCCccceEECCCCCEEEEEECCCC---EEEEEECCCCeEE-EEEeCCCCcceEE
Confidence                                11223344899999999999887665 446   9999999998876 6666667889999


Q ss_pred             EeCCCCEEE-EEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCCcceEEeecCC
Q 005235          547 FHPTRSIFF-VST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNL-IVGSREGKLCWFDMDLSSKPYRVLKCHP  623 (707)
Q Consensus       547 fspd~~~l~-v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L-~sGs~Dg~I~vwDl~~~~~~~~~l~~h~  623 (707)
                      |+|+++.|+ +++ ++.|++||+.+++.+..+..+ ..+.+++|+|+|++| ++++.++.|++||+.++ .....+. +.
T Consensus       123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~-~~  199 (391)
T 1l0q_A          123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK-VE  199 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CS
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-cC
Confidence            999999885 555 899999999999999888876 567999999999988 56778899999999876 6666665 55


Q ss_pred             CCEEEEEEcCCCCEEEEEe---CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE-EEEeCC
Q 005235          624 KDITNVAFHRSYPLFASCS---DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL-FTAGAD  699 (707)
Q Consensus       624 ~~I~~vafspdg~llaSgs---~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L-~s~g~D  699 (707)
                      ..+.+++|+|++.+|++++   .++.|++||.      .+..   ++..+..|..     +.+++|+|++++| ++++.|
T Consensus       200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~------~~~~---~~~~~~~~~~-----~~~~~~s~dg~~l~~s~~~d  265 (391)
T 1l0q_A          200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT------GTNK---ITARIPVGPD-----PAGIAVTPDGKKVYVALSFX  265 (391)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEET------TTTE---EEEEEECCSS-----EEEEEECTTSSEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEecCcCCCcEEEEEC------CCCe---EEEEEecCCC-----ccEEEEccCCCEEEEEcCCC
Confidence            6899999999999888887   6899999954      3332   3566776653     8999999999988 677889


Q ss_pred             CcEEEEeC
Q 005235          700 SVIRLYCH  707 (707)
Q Consensus       700 g~IrlWdl  707 (707)
                      +.|++||+
T Consensus       266 ~~v~v~d~  273 (391)
T 1l0q_A          266 NTVSVIDT  273 (391)
T ss_dssp             TEEEEEET
T ss_pred             CEEEEEEC
Confidence            99999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=270.91  Aligned_cols=255  Identities=15%  Similarity=0.201  Sum_probs=197.2

Q ss_pred             cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccC-
Q 005235          416 IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF-  494 (707)
Q Consensus       416 ~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~-  494 (707)
                      ..+.|.+|+|+|++. .|++++.|+.|+||++.++......                ..+...       ....+.+|. 
T Consensus        27 ~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~----------------~~~~~~-------~~~~~~~h~~   82 (447)
T 3dw8_B           27 EADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSH----------------SRGEYN-------VYSTFQSHEP   82 (447)
T ss_dssp             GGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CC----------------CCCCEE-------EEEEEECCCC
T ss_pred             ccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcc----------------ccccee-------Eecccccccc
Confidence            368999999999994 7888889999999998765321000                000000       011345676 


Q ss_pred             -----------CCeEEEEEcCCC--CEEEEEeCCCCccEEEEEECCCCcee-----------------------------
Q 005235          495 -----------KMVSSVEWHRRG--DYLSTVMPAGESRAIFMHQLSKKLSH-----------------------------  532 (707)
Q Consensus       495 -----------~~V~~v~~sp~g--~~lat~s~dg~~~~V~Iwdl~~~~~~-----------------------------  532 (707)
                                 ..|.+++|+|++  .+|++++.|+   .|++|++......                             
T Consensus        83 ~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  159 (447)
T 3dw8_B           83 EFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK---TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRP  159 (447)
T ss_dssp             EEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSS---CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEE
T ss_pred             cccccccccccCceEEEEEcCCCCcceEEEeCCCC---eEEEEecccccCCcceecccCccccccCcccccceEeccccc
Confidence                       889999999998  8999999988   9999998764321                             


Q ss_pred             ---------eeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCC-CeEEEE-------EeCCCCCeEEEEEcCCC-
Q 005235          533 ---------RIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK-QRLIKK-------LETGLKEVSSIAIHPAG-  592 (707)
Q Consensus       533 ---------~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~-~~~~~~-------l~~~~~~I~sl~~spdg-  592 (707)
                               ...+  .|...|.+++|+|++.+|++|.|+.|++||+.+ ++.+..       +.+|...|++++|+|+| 
T Consensus       160 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  239 (447)
T 3dw8_B          160 MDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC  239 (447)
T ss_dssp             EEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT
T ss_pred             hheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC
Confidence                     0122  688999999999999999998899999999994 444443       44788889999999999 


Q ss_pred             CEEEEEECCCcEEEEECCCCCcc----eEEeecCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEeccccc
Q 005235          593 DNLIVGSREGKLCWFDMDLSSKP----YRVLKCHPK------------DITNVAFHRSYPLFASCSDDCTAYVFHGMVYS  656 (707)
Q Consensus       593 ~~L~sGs~Dg~I~vwDl~~~~~~----~~~l~~h~~------------~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~  656 (707)
                      .+|++|+.||.|++||++++ ..    ...+..|..            .|.+++|+|++++|++++. |.|+|||+... 
T Consensus       240 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~-  316 (447)
T 3dw8_B          240 NTFVYSSSKGTIRLCDMRAS-ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME-  316 (447)
T ss_dssp             TEEEEEETTSCEEEEETTTC-SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC-
T ss_pred             cEEEEEeCCCeEEEEECcCC-ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC-
Confidence            99999999999999999976 43    688888876            8999999999999999999 99999965421 


Q ss_pred             CCCCCCcccceEEeeCCCCCCC-----------CCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          657 DLNQNPLIVPLEILRGHTSSNG-----------RGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       657 Dl~~~~~~~pl~~l~gh~~~~~-----------~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                          ..   ++..+.+|.....           ..+..++|+|++++|++|+.||.|++||+
T Consensus       317 ----~~---~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          317 ----NR---PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             ----SS---CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred             ----cc---ccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence                22   3667788864200           00334999999999999999999999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5e-28  Score=259.25  Aligned_cols=229  Identities=18%  Similarity=0.194  Sum_probs=192.0

Q ss_pred             cEEEEEeCCCcEEEEeCC--CCeEEEEEec-CCcEEEEEEccC--CCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          389 YLEYKGSTDGTVRIWEVE--SGRCLRVLEI-GEAIQYVAWNPL--PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~--tg~~l~~l~~-~~~V~~v~~spd--g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      .++++|+.||+|+||++.  +++++..+.. .+.|.+++|+|+  + ..|++++.|+.|++|++.++...          
T Consensus        24 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~----------   92 (379)
T 3jrp_A           24 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWS----------   92 (379)
T ss_dssp             SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEEE----------
T ss_pred             CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCcee----------
Confidence            489999999999999998  5667777765 789999999977  6 47888889999999997654210          


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCceee-eee-ccC
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLH  539 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~  539 (707)
                                            .......|...|.+++|+|+  +.+|++++.|+   .|++||+....... ..+ .+.
T Consensus        93 ----------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~  147 (379)
T 3jrp_A           93 ----------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---KVSVVEFKENGTTSPIIIDAHA  147 (379)
T ss_dssp             ----------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEECCTTSCCCEEEEECCT
T ss_pred             ----------------------EeeeecCCCcceEEEEeCCCCCCCEEEEecCCC---cEEEEecCCCCceeeEEecCCC
Confidence                                  11134578999999999999  99999999998   99999998874431 344 888


Q ss_pred             CCeEEEEEeC-------------CCCEEEEEe-CCeEEEEECCCC----eEEEEEeCCCCCeEEEEEcCC---CCEEEEE
Q 005235          540 GLPVSSVFHP-------------TRSIFFVST-KKNIRVYDLLKQ----RLIKKLETGLKEVSSIAIHPA---GDNLIVG  598 (707)
Q Consensus       540 ~~V~~v~fsp-------------d~~~l~v~s-dg~I~iwDl~~~----~~~~~l~~~~~~I~sl~~spd---g~~L~sG  598 (707)
                      ..|.+++|+|             ++.+|++++ |+.|++||+.++    .++..+.+|...|.+++|+|+   +.+|++|
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence            9999999999             689999988 899999999865    356778889999999999999   8999999


Q ss_pred             ECCCcEEEEECCCCCcc--eEEe--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          599 SREGKLCWFDMDLSSKP--YRVL--KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       599 s~Dg~I~vwDl~~~~~~--~~~l--~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      +.||.|++||+..+..+  ...+  ..|...|++++|+|++.+|++++.||.|+||++.
T Consensus       228 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             eCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            99999999999876322  2222  2378899999999999999999999999999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=8.7e-28  Score=255.50  Aligned_cols=244  Identities=13%  Similarity=0.136  Sum_probs=197.6

Q ss_pred             cCCcEEEEEEccCCCccEEEEE-e---CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe
Q 005235          416 IGEAIQYVAWNPLPELPVLAVS-V---GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL  491 (707)
Q Consensus       416 ~~~~V~~v~~spdg~~~lla~s-~---d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~  491 (707)
                      +.+.|.+|+|+|++. .+++++ .   ++.|++|++.++...                                 .....
T Consensus        17 h~~~v~~~~~~p~~~-~l~~~~s~~~~d~~v~iw~~~~~~~~---------------------------------~~~~~   62 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSA-KFVTMGNFARGTGVIQLYEIQHGDLK---------------------------------LLREI   62 (357)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEEC--CCCEEEEEEEECSSSEE---------------------------------EEEEE
T ss_pred             CCCceEEEEEcCCCc-eEEEecCccCCCcEEEEEeCCCCccc---------------------------------ceeee
Confidence            378999999999984 455554 3   889999997654221                                 01234


Q ss_pred             ccCCCeEEEEEcCC---CCEEEEEeCCCCccEEEEEECCCCc-eeeeee-ccCCCeEEEEE------eCCCCEEEEEe-C
Q 005235          492 RHFKMVSSVEWHRR---GDYLSTVMPAGESRAIFMHQLSKKL-SHRIPF-KLHGLPVSSVF------HPTRSIFFVST-K  559 (707)
Q Consensus       492 ~h~~~V~~v~~sp~---g~~lat~s~dg~~~~V~Iwdl~~~~-~~~~~~-~~~~~V~~v~f------spd~~~l~v~s-d  559 (707)
                      +|...|.+++|+|+   |.+|++++.|+   .|++|++.+.. .. ..+ .|...|.+++|      +|++.+|++++ |
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGG---NLHIWNLEAPEMPV-YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTS---CEEEECTTSCSSCS-EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCC---eEEEEeCCCCCccE-EEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence            78999999999998   79999999988   99999999887 55 677 89999999954      67899999998 8


Q ss_pred             CeEEEEECCCCe-EEEEEeCCCC----CeEEEE----EcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEE
Q 005235          560 KNIRVYDLLKQR-LIKKLETGLK----EVSSIA----IHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVA  630 (707)
Q Consensus       560 g~I~iwDl~~~~-~~~~l~~~~~----~I~sl~----~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~va  630 (707)
                      +.|++||+.+++ .+..+..+..    .|.+++    |+|++.+|++|+.||.|++||++++ .+ .....|...|.+++
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~-~~~~~~~~~v~~~~  216 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-AL-RWETNIKNGVCSLE  216 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT-EE-EEEEECSSCEEEEE
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC-ce-eeecCCCCceEEEE
Confidence            999999999876 6777766554    789998    7899999999999999999999876 43 44567889999999


Q ss_pred             EcC---CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEe
Q 005235          631 FHR---SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAGADSVIRLYC  706 (707)
Q Consensus       631 fsp---dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g~Dg~IrlWd  706 (707)
                      |+|   ++.+|++|+.||.|++|++.....+.    ......+.+|...    |.+++|+|+++ +|++++.||.|++|+
T Consensus       217 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~iwd  288 (357)
T 3i2n_A          217 FDRKDISMNKLVATSLEGKFHVFDMRTQHPTK----GFASVSEKAHKST----VWQVRHLPQNRELFLTAGGAGGLHLWK  288 (357)
T ss_dssp             ESCSSSSCCEEEEEESTTEEEEEEEEEEETTT----EEEEEEEECCSSC----EEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             cCCCCCCCCEEEEECCCCeEEEEeCcCCCccc----ceeeeccCCCcCC----EEEEEECCCCCcEEEEEeCCCcEEEee
Confidence            999   89999999999999999765432111    0112245588887    99999999999 899999999999998


Q ss_pred             C
Q 005235          707 H  707 (707)
Q Consensus       707 l  707 (707)
                      +
T Consensus       289 ~  289 (357)
T 3i2n_A          289 Y  289 (357)
T ss_dssp             E
T ss_pred             c
Confidence            4

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=8.5e-27  Score=256.60  Aligned_cols=224  Identities=16%  Similarity=0.244  Sum_probs=192.5

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++++|+.||+|+|||+.++++++.+.. ...|.+++|++.   .+++++.++.+.+|+.......              
T Consensus       160 ~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~---~l~sgs~d~~i~~~d~~~~~~~--------------  222 (420)
T 4gga_A          160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHH--------------  222 (420)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSSCE--------------
T ss_pred             CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC---EEEEEeCCCceeEeeeccccee--------------
Confidence            4899999999999999999999999887 788999888654   5888889999999997653211              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee---eee-ccCCCeE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR---IPF-KLHGLPV  543 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~---~~~-~~~~~V~  543 (707)
                                         ...+.+|...+..+.|+++|.++++++.|+   .|+||++..+....   ..+ .+.+.|.
T Consensus       223 -------------------~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~---~v~i~~~~~~~~~~~~~~~~~~~~~~V~  280 (420)
T 4gga_A          223 -------------------VATLSGHSQEVCGLRWAPDGRHLASGGNDN---LVNVWPSAPGEGGWVPLQTFTQHQGAVK  280 (420)
T ss_dssp             -------------------EEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEESSCCSSCSCCSEEECCCSSCEE
T ss_pred             -------------------eEEecccccceeeeeecCCCCeeeeeeccc---cceEEeeccccccceeeeeecccCCcee
Confidence                               123568999999999999999999999998   99999998765421   233 7889999


Q ss_pred             EEEEeCCCC-EEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEECCCCCcceE
Q 005235          544 SSVFHPTRS-IFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS--REGKLCWFDMDLSSKPYR  617 (707)
Q Consensus       544 ~v~fspd~~-~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs--~Dg~I~vwDl~~~~~~~~  617 (707)
                      +++|+|.+. ++++++   |++|++||+.+++++..+..+ ..+.++.|+|++..|++++  .|+.|+|||+.++ +++.
T Consensus       281 ~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~  358 (420)
T 4gga_A          281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVA  358 (420)
T ss_dssp             EEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEE
T ss_pred             eeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEE
Confidence            999999765 455443   899999999999999988876 6799999999999998876  7899999999987 7899


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      ++.+|...|++|+|+|+|.+|||||.||+|+||++.
T Consensus       359 ~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          359 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            999999999999999999999999999999999653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2e-27  Score=250.89  Aligned_cols=269  Identities=13%  Similarity=0.085  Sum_probs=191.2

Q ss_pred             EEEEEeCCCcEEEEeCCCC---eEEEEEec-CCcEEEEEEccCCCccEEEEEeCC-eEEEEECCCCCchhcccccceeee
Q 005235          390 LEYKGSTDGTVRIWEVESG---RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQ-DVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg---~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~-~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      ..+......+|++|+..++   ++++++.+ ..+|..|.+.||. ..|++++.++ .+..                +..+
T Consensus        55 ~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~----------------v~sl  117 (356)
T 2w18_A           55 PCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDV-YNLVCVALGNLEIRE----------------IRAL  117 (356)
T ss_dssp             EEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTC-CSCEEEEECSSSEEE----------------EEEE
T ss_pred             cEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcc-cceeeeeeccccccc----------------eEEE
Confidence            3333444568999999999   89999999 5689999999987 4677777654 1111                1111


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-Cceeeeee-ccCCCe
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-KLSHRIPF-KLHGLP  542 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-~~~~~~~~-~~~~~V  542 (707)
                          +....|..+..|..       ..+|...|.++   ++|+.+.+++ .+.++.|++|+++. ++.. ..+ .|...+
T Consensus       118 ----a~spd~~~~~~~l~-------s~g~~~~v~~l---~~g~lv~ss~-~g~d~~V~~~~~s~dG~~~-~s~~~~~~~v  181 (356)
T 2w18_A          118 ----FCSSDDESEKQVLL-------KSGNIKAVLGL---TKRRLVSSSG-TLSDQQVEVMTFAEDGGGK-ENQFLMPPEE  181 (356)
T ss_dssp             ----CC------CCEEEE-------EEEEEEEEEEE---TTTEEEEEES-SSTTCEEEEEEECTTSCEE-EEEEECCCSS
T ss_pred             ----EECCCccccccEEE-------eCCCeEEEEec---CCCcEEEecc-cCCCCcEEEEEECCCCcee-eeeccCCCce
Confidence                11112222222211       12344344443   4555555543 22234999999955 5555 566 888889


Q ss_pred             EEEEEeC---CCCEEEEEe-CCeEEEEECCCCeEEEEEeCCC---CCeEEEEEcCCCCEE------------EEEECCCc
Q 005235          543 VSSVFHP---TRSIFFVST-KKNIRVYDLLKQRLIKKLETGL---KEVSSIAIHPAGDNL------------IVGSREGK  603 (707)
Q Consensus       543 ~~v~fsp---d~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~---~~I~sl~~spdg~~L------------~sGs~Dg~  603 (707)
                      ..++|+|   ++.+|++++ |++|+|||+.++++++++.+|.   ..+.+++|+|+|.++            ++|+.|++
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred             eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            9999999   789999988 9999999999999999998754   357888999999876            56888999


Q ss_pred             EEEEECCCCCcceEEe-----ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCC
Q 005235          604 LCWFDMDLSSKPYRVL-----KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG  678 (707)
Q Consensus       604 I~vwDl~~~~~~~~~l-----~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~  678 (707)
                      |++||..++ +.+.++     .+|...+.+..++  +.++|+|+.|++|+||      |+.++..   +.+|.+|...  
T Consensus       262 IklWd~~tg-k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIW------Dl~tGk~---l~tL~gH~~~--  327 (356)
T 2w18_A          262 LIVINPKTT-LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIW------DLLLGQC---TALLPPVSDQ--  327 (356)
T ss_dssp             EEEEETTTT-EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEE------ETTTCSE---EEEECCC--C--
T ss_pred             EEEEECCCC-EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEE------ECCCCcE---EEEecCCCCC--
Confidence            999999877 666655     3676665555554  8899999999999999      5555554   7889999765  


Q ss_pred             CCee-EEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          679 RGVM-DCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       679 ~gV~-~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                        +. .++|||+|++|+||+.|++|+||++
T Consensus       328 --vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          328 --HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             --eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence              54 6899999999999999999999984

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=1.1e-27  Score=253.63  Aligned_cols=247  Identities=16%  Similarity=0.096  Sum_probs=200.6

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|.+++|+|++ ..|++++.++.|++|++..+....                               .......|...
T Consensus        11 ~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~~-------------------------------~~~~~~~~~~~   58 (342)
T 1yfq_A           11 KDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNV-------------------------------DLLQSLRYKHP   58 (342)
T ss_dssp             SSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEE-------------------------------EEEEEEECSSC
T ss_pred             CCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCccc-------------------------------cceeeeecCCc
Confidence            6789999999998 378888899999999976542100                               01124488999


Q ss_pred             eEEEEEcCCCC-EEEEEeCCCCccEEEEEEC-CCCceeeeee-c--cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-
Q 005235          497 VSSVEWHRRGD-YLSTVMPAGESRAIFMHQL-SKKLSHRIPF-K--LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-  569 (707)
Q Consensus       497 V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl-~~~~~~~~~~-~--~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-  569 (707)
                      |.+++|+|++. +|++++.++   .|++|++ .++..  ..+ .  |...|.+++|+| +.+|++++ |+.|++||+.+ 
T Consensus        59 v~~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~  132 (342)
T 1yfq_A           59 LLCCNFIDNTDLQIYVGTVQG---EILKVDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNY  132 (342)
T ss_dssp             EEEEEEEESSSEEEEEEETTS---CEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHH
T ss_pred             eEEEEECCCCCcEEEEEcCCC---eEEEEEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccc
Confidence            99999999999 999999988   9999999 87765  455 7  999999999999 99999988 99999999987 


Q ss_pred             --------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CCc-ceEEeecCCCCEEEEEEcC-CCCEE
Q 005235          570 --------QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL-SSK-PYRVLKCHPKDITNVAFHR-SYPLF  638 (707)
Q Consensus       570 --------~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~-~~~-~~~~l~~h~~~I~~vafsp-dg~ll  638 (707)
                              ++++..+. +...|.+++|+|++  |++|+.|+.|++||+.. ... .......|...|++++|+| ++.+|
T Consensus       133 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l  209 (342)
T 1yfq_A          133 GDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY  209 (342)
T ss_dssp             TTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred             ccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEE
Confidence                    66665555 77889999999887  99999999999999987 533 3344557888999999999 99999


Q ss_pred             EEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCC-----CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          639 ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS-----NGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       639 aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~-----~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ++++.||.|+||++...++   .....++..+.+|...     +...|.+++|+|++.+|++++.||.|++||+
T Consensus       210 ~~~~~dg~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          210 ACSSIDGRVAVEFFDDQGD---DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             EEEETTSEEEEEECCTTCC---STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             EEEecCCcEEEEEEcCCCc---ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            9999999999997643210   1111346778888640     0113999999999999999999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-26  Score=240.86  Aligned_cols=238  Identities=16%  Similarity=0.166  Sum_probs=202.4

Q ss_pred             eEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc
Q 005235          409 RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD  487 (707)
Q Consensus       409 ~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~  487 (707)
                      +++..+.. .+.|.+++| |++. .+++++.|+.|++|++.++..                                  .
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~----------------------------------~   52 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWL----------------------------------G   52 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEE----------------------------------E
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEE----------------------------------E
Confidence            56677776 789999999 8773 788899999999999755311                                  1


Q ss_pred             eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee--eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235          488 GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH--RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIR  563 (707)
Q Consensus       488 ~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~--~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~  563 (707)
                      .....|...|.+++|+|++.+|++++.++   .|++|++......  ...+ .|...|.+++|  ++.+|++++ |+.|+
T Consensus        53 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~  127 (313)
T 3odt_A           53 TVVYTGQGFLNSVCYDSEKELLLFGGKDT---MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAK  127 (313)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTS---CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred             EEeecCCccEEEEEECCCCCEEEEecCCC---eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEE
Confidence            23557899999999999999999999998   9999998765321  1455 78999999999  467888888 89999


Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeec-CCCCEEEEEEcCCCCEEEEE
Q 005235          564 VYDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKC-HPKDITNVAFHRSYPLFASC  641 (707)
Q Consensus       564 iwDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-h~~~I~~vafspdg~llaSg  641 (707)
                      +||  .++.+..+..|...|.+++|+| ++.+|++|+.||.|++||..   .....+.. |...|.+++|+|++. |+++
T Consensus       128 ~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~  201 (313)
T 3odt_A          128 VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISC  201 (313)
T ss_dssp             EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEE
T ss_pred             EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEc
Confidence            999  6788889999999999999988 89999999999999999943   56777777 899999999999998 9999


Q ss_pred             eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +.||.|++||+      .+..   ++..+.+|...    |.+++|+|++ .|++++.||.|++||+
T Consensus       202 ~~dg~i~i~d~------~~~~---~~~~~~~~~~~----i~~~~~~~~~-~l~~~~~dg~v~iwd~  253 (313)
T 3odt_A          202 SNDGLIKLVDM------HTGD---VLRTYEGHESF----VYCIKLLPNG-DIVSCGEDRTVRIWSK  253 (313)
T ss_dssp             ETTSEEEEEET------TTCC---EEEEEECCSSC----EEEEEECTTS-CEEEEETTSEEEEECT
T ss_pred             cCCCeEEEEEC------Cchh---hhhhhhcCCce----EEEEEEecCC-CEEEEecCCEEEEEEC
Confidence            99999999954      3333   47888999887    9999999999 5999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.6e-28  Score=285.96  Aligned_cols=246  Identities=15%  Similarity=0.166  Sum_probs=205.4

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|++++|+|++. .+++++.||.|+||++..+..                                .....+.+|.+.
T Consensus         9 ~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~--------------------------------~~~~~l~~h~~~   55 (753)
T 3jro_A            9 NELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETH--------------------------------KLIDTLTGHEGP   55 (753)
T ss_dssp             CCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEE--------------------------------EEEEEECCCSSC
T ss_pred             cceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCC--------------------------------ccceeccCCcCc
Confidence            78999999999994 788888999999999753211                                011235689999


Q ss_pred             eEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCc--eeeeee-ccCCCeEEEEEeCC--CCEEEEEe-CCeEEEEECC
Q 005235          497 VSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKL--SHRIPF-KLHGLPVSSVFHPT--RSIFFVST-KKNIRVYDLL  568 (707)
Q Consensus       497 V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~--~~~~~~-~~~~~V~~v~fspd--~~~l~v~s-dg~I~iwDl~  568 (707)
                      |.+++|+++  |++|++++.||   .|++||+.++.  .. ..+ .|...|.+++|+|+  +.+|++++ ||.|++||+.
T Consensus        56 V~~l~~s~~~~~~~l~s~s~Dg---~I~vwd~~~~~~~~~-~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           56 VWRVDWAHPKFGTILASCSYDG---KVLIWKEENGRWSQI-AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  131 (753)
T ss_dssp             EEEEEECCTTSCSEEEEEETTS---CEEEEEEETTEEEEE-EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             eEEEEecCCCCCCEEEEEeCCC---eEEEEECCCCccccc-ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence            999999988  99999999998   99999999886  33 445 78999999999999  99999998 8999999998


Q ss_pred             CC--eEEEEEeCCCCCeEEEEEcC-------------CCCEEEEEECCCcEEEEECCCCC---cceEEeecCCCCEEEEE
Q 005235          569 KQ--RLIKKLETGLKEVSSIAIHP-------------AGDNLIVGSREGKLCWFDMDLSS---KPYRVLKCHPKDITNVA  630 (707)
Q Consensus       569 ~~--~~~~~l~~~~~~I~sl~~sp-------------dg~~L~sGs~Dg~I~vwDl~~~~---~~~~~l~~h~~~I~~va  630 (707)
                      ++  .....+.+|...|.+++|+|             ++.+|++|+.||.|++||++.+.   .+...+.+|...|++++
T Consensus       132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~  211 (753)
T 3jro_A          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  211 (753)
T ss_dssp             SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence            76  34456778889999999999             58999999999999999998764   45567889999999999


Q ss_pred             EcCC---CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          631 FHRS---YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       631 fspd---g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |+|+   +.+|++|+.||+|+||+.....    ......+....+|...    |++++|+|++.+|++++.||.|++|++
T Consensus       212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~----~~~~~~~~~~~~~~~~----v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQ----GPWKKTLLKEEKFPDV----LWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             ECCCCSSSEEEEEEESSSCEEEEEESSSS----SCCBCCBSSSSCCSSC----CCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             eccCCCCCCEEEEEecCCEEEEecCCCCC----CcceeEEeccCCCCCc----eEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            9999   8999999999999999765321    1111123334556665    999999999999999999999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.9e-28  Score=271.63  Aligned_cols=256  Identities=10%  Similarity=0.069  Sum_probs=202.9

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc--eEEeccC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD--GIRLRHF  494 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~--~~~~~h~  494 (707)
                      ...|.+|+|+||| ..+++++.|++|+  ++..+. .+.+|...+.++.|+     .+|.+..|+......  .....|.
T Consensus        15 ~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~~-~l~gh~~~v~~V~Fs-----Pdg~~~~~~~~~~~~~~~~~~~~~   85 (588)
T 2j04_A           15 EDWKNNLTWARDG-TLYLTTFPDISIG--QPKYAK-DINCNSKNLFHVKEF-----PLEFENKLDFELAQQNGLLNSQPV   85 (588)
T ss_dssp             SSSSCCEEECTTS-CEEEECSSSEEEE--EECCCS-CCSSBGGGTEEEEEE-----CCCCCCTTTTSCCCSSCSSTTSCS
T ss_pred             hccEEEEEECCCC-CEEEEEcCCceee--cccccc-eecCCCccEEEEEEC-----CCCCcceEEEEeCCCceEeecCCC
Confidence            6789999999999 4677778899999  766654 346888888888874     233444444443221  1233568


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCC-----CeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHG-----LPVSSVFHPTRSIFFVST-KKNIRVYDLL  568 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~-----~V~~v~fspd~~~l~v~s-dg~I~iwDl~  568 (707)
                      ..|.+++|||+|.+||+++.||   .|+||+...  .. ..+.+..     .|.+++|||+|++|++|+ ||+|+|||+.
T Consensus        86 ~~V~~vawSPdG~~LAs~s~dg---~V~iwd~~~--~l-~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSNNG---NVSVFKDNK--ML-TNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEETTS---CEEEEETTE--EE-EECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CcEEEEEECCCCCEEEEEeCCC---cEEEEeCCc--ee-eeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            8999999999999999999999   999999544  22 3344333     599999999999999999 8999999999


Q ss_pred             CCe-------EEEEE----eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--ceEEe-ecCCCCEEEEEEcCC
Q 005235          569 KQR-------LIKKL----ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK--PYRVL-KCHPKDITNVAFHRS  634 (707)
Q Consensus       569 ~~~-------~~~~l----~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~--~~~~l-~~h~~~I~~vafspd  634 (707)
                      ++.       .+.++    .+|..+|.+++|+|+|  |++++.|+.|++||+..+..  ..+++ .+|...|.+|+|+  
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--  235 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--  235 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence            875       46777    5566799999999999  88899999999999987632  34567 4788999999999  


Q ss_pred             CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee-CCCCCCCCCeeEEEE--cCCCCEEEEEeCCCcEEEEeC
Q 005235          635 YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTSSNGRGVMDCKF--HPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       635 g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~~~~~gV~~l~f--spdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +..||+++ +++|++|+.      ....    +..+. ||...    |.+++|  +|++..|++++.||+ ++|.+
T Consensus       236 g~~LASa~-~~tIkLWd~------~~~~----~~~~~~gh~~~----V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          236 DYKVVLTC-PGYVHKIDL------KNYS----ISSLKTGSLEN----FHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             TTEEEEEC-SSEEEEEET------TTTE----EEEEECSCCSC----CCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             CCEEEEEe-CCeEEEEEC------CCCe----EEEEEcCCCce----EEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            68999998 699999954      3332    22333 89887    999999  999999999999999 99974

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=2.3e-26  Score=240.75  Aligned_cols=271  Identities=14%  Similarity=0.195  Sum_probs=211.7

Q ss_pred             cccCCCCCccCC--hhhhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCC
Q 005235          296 ESYNPSLEYIPT--QEELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKP  373 (707)
Q Consensus       296 ~synP~ge~L~s--~~~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp  373 (707)
                      -+|||++ +|+.  ++.++.|+           ...+..++.+..     .+|...+..+.++|..              
T Consensus        31 l~WS~~~-~lAvg~D~tV~iWd-----------~~tg~~~~~~~~-----~~~~~~V~~v~~~~~~--------------   79 (318)
T 4ggc_A           31 VDWSSGN-VLAVALDNSVYLWS-----------ASSGDILQLLQM-----EQPGEYISSVAWIKEG--------------   79 (318)
T ss_dssp             EEECTTS-EEEEEETTEEEEEE-----------TTTCCEEEEEEC-----CSTTCCEEEEEECTTS--------------
T ss_pred             EEECCCC-EEEEEeCCEEEEEE-----------CCCCCEEEEEEe-----cCCCCeEEEEEECCCC--------------
Confidence            3688876 6765  44555565           334444444421     2233344677787665              


Q ss_pred             CCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc
Q 005235          374 KLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE  452 (707)
Q Consensus       374 ~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~  452 (707)
                                     .++++|+.||+|+||++.+++++..+.. ...+.++.+.+.   .+++++.++.+.+|+......
T Consensus        80 ---------------~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~---~l~s~~~~~~~~~~~~~~~~~  141 (318)
T 4ggc_A           80 ---------------NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEH  141 (318)
T ss_dssp             ---------------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSSC
T ss_pred             ---------------CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCC---EEEEEecCCceEeeecCCCce
Confidence                           4899999999999999999999999887 666776666543   588888899999998655421


Q ss_pred             hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235          453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH  532 (707)
Q Consensus       453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~  532 (707)
                                                       ....+.+|...+.++.|+++|.+|++++.|+   .|+|||+.+++..
T Consensus       142 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~  185 (318)
T 4ggc_A          142 ---------------------------------HVATLSGHSQEVCGLRWAPDGRHLASGGNDN---LVNVWPSAPGEGG  185 (318)
T ss_dssp             ---------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEESSCBTTB
T ss_pred             ---------------------------------eEEEEcCccCceEEEEEcCCCCEEEEEecCc---ceeEEECCCCccc
Confidence                                             1123568999999999999999999999998   9999999876543


Q ss_pred             e---eee-ccCCCeEEEEEeCCCCEEE-EE--e-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE--CCC
Q 005235          533 R---IPF-KLHGLPVSSVFHPTRSIFF-VS--T-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS--REG  602 (707)
Q Consensus       533 ~---~~~-~~~~~V~~v~fspd~~~l~-v~--s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs--~Dg  602 (707)
                      .   ... .+.+.|.+++++|.+..++ ++  + +++|++||........... +...+.++.|+|++..+++++  .|+
T Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~  264 (318)
T 4ggc_A          186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQN  264 (318)
T ss_dssp             SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred             ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCC
Confidence            1   222 6778999999999766443 33  3 6999999999888776655 557899999999999988765  799


Q ss_pred             cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          603 KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       603 ~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .|++||+.++ +++.++.+|...|++++|+|++++|||||.||+|+||++.
T Consensus       265 ~i~iwd~~~~-~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          265 QLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             CEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            9999999987 7899999999999999999999999999999999999653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=9.4e-28  Score=265.66  Aligned_cols=245  Identities=13%  Similarity=0.152  Sum_probs=189.7

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ...|+||+|+|.....|++++.||.|+|||+.++....                                .....+|.+.
T Consensus       119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~--------------------------------~~~~~gH~~~  166 (435)
T 4e54_B          119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT--------------------------------FIKGIGAGGS  166 (435)
T ss_dssp             SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE--------------------------------EECCCSSSCC
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee--------------------------------EEEccCCCCC
Confidence            56799999999654567788899999999987653210                                0113479999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235          497 VSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR  571 (707)
Q Consensus       497 V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~  571 (707)
                      |++|+|+| ++.+|++++.|+   +|+|||+.+.... ...   .+...+.+++|+|++.+|++|+ ||.|++||+.. +
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~---~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~  241 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEG---TTRLQDFKGNILR-VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-K  241 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSS---CEEEEETTSCEEE-EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-C
T ss_pred             EEEEEEeCCCCCEEEEEeCCC---EEEEeeccCCcee-EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-c
Confidence            99999998 689999999998   9999999876554 322   3345678999999999999998 89999999864 5


Q ss_pred             EEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCCc--ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235          572 LIKKLETGLKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLSSK--PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAY  648 (707)
Q Consensus       572 ~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~~~--~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~  648 (707)
                      .+..+.+|...|++++|+|++. +|++|+.|+.|++||++....  .+....+|...|++++|+|+|.+|++|+.||+|+
T Consensus       242 ~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~  321 (435)
T 4e54_B          242 ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIR  321 (435)
T ss_dssp             BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEE
T ss_pred             eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEE
Confidence            5677889999999999999986 788999999999999987532  2233467999999999999999999999999999


Q ss_pred             EEecccccCCCCCCcccceEEeeCCCCCC--CCCeeEEEEcCCCCEEEEEe------------CCCcEEEEeC
Q 005235          649 VFHGMVYSDLNQNPLIVPLEILRGHTSSN--GRGVMDCKFHPRQPWLFTAG------------ADSVIRLYCH  707 (707)
Q Consensus       649 Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~--~~gV~~l~fspdg~~L~s~g------------~Dg~IrlWdl  707 (707)
                      ||++.      +...   ...+.+|....  ...+..+.|+|++.++++++            .+++|++||+
T Consensus       322 iwd~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~  385 (435)
T 4e54_B          322 VYSAS------QWDC---PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG  385 (435)
T ss_dssp             EEESS------SSSS---EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECS
T ss_pred             EEECC------CCcc---ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEEC
Confidence            99654      3222   34455553321  11245567888877777664            2357999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=3.5e-27  Score=257.57  Aligned_cols=239  Identities=15%  Similarity=0.199  Sum_probs=193.5

Q ss_pred             EEEEEccCCCccEE-EEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEE
Q 005235          421 QYVAWNPLPELPVL-AVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS  499 (707)
Q Consensus       421 ~~v~~spdg~~~ll-a~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~  499 (707)
                      ..++++|+.. .++ +++.+|.|.||++.......                              .....+.+|.+.|.+
T Consensus        38 ~~~~~~~~~~-~~~~~~~~~g~i~v~~~~~~~~~~------------------------------~~~~~~~~h~~~V~~   86 (402)
T 2aq5_A           38 GFCAVNPKFM-ALICEASGGGAFLVLPLGKTGRVD------------------------------KNVPLVCGHTAPVLD   86 (402)
T ss_dssp             CSEEECSSEE-EEEBCCSSSCCEEEEETTCCEECC------------------------------TTCCCBCCCSSCEEE
T ss_pred             CcEEECCCeE-EEEEEEcCCCEEEEEECccCCCCC------------------------------CCCceEecCCCCEEE
Confidence            4578888872 233 35678899999875431110                              011124589999999


Q ss_pred             EEEcC-CCCEEEEEeCCCCccEEEEEECCCC-------ceeeeee-ccCCCeEEEEEeCCC-CEEEEEe-CCeEEEEECC
Q 005235          500 VEWHR-RGDYLSTVMPAGESRAIFMHQLSKK-------LSHRIPF-KLHGLPVSSVFHPTR-SIFFVST-KKNIRVYDLL  568 (707)
Q Consensus       500 v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~-------~~~~~~~-~~~~~V~~v~fspd~-~~l~v~s-dg~I~iwDl~  568 (707)
                      ++|+| ++.+|++++.|+   .|+||++.++       ... ..+ .|...|.+++|+|++ .+|++++ |+.|++||+.
T Consensus        87 ~~~~p~~~~~l~s~s~dg---~v~vw~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  162 (402)
T 2aq5_A           87 IAWCPHNDNVIASGSEDC---TVMVWEIPDGGLVLPLREPV-ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG  162 (402)
T ss_dssp             EEECTTCTTEEEEEETTS---EEEEEECCTTCCSSCBCSCS-EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred             EEeCCCCCCEEEEEeCCC---eEEEEEccCCCCccccCCce-EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence            99999 999999999998   9999999987       334 566 899999999999998 6888888 9999999999


Q ss_pred             CCeEEEEE--eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe-ecCCCC-EEEEEEcCCCCEEEEE---
Q 005235          569 KQRLIKKL--ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL-KCHPKD-ITNVAFHRSYPLFASC---  641 (707)
Q Consensus       569 ~~~~~~~l--~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l-~~h~~~-I~~vafspdg~llaSg---  641 (707)
                      +++.+..+  ..|...|.+++|+|+|.+|++|+.||.|++||++++ .++..+ .+|... +.+++|+|++.+|++|   
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~  241 (402)
T 2aq5_A          163 TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR  241 (402)
T ss_dssp             TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred             CCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccC
Confidence            99999999  789999999999999999999999999999999987 677777 788776 8999999999999999   


Q ss_pred             eCCCcEEEEecccccCCCCCCcccceEEee-CCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235          642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl  707 (707)
                      +.|+.|+|||+.      ....  ++.... .|...    |.+++|+|++.+|++++ .||.|++|++
T Consensus       242 ~~d~~i~iwd~~------~~~~--~~~~~~~~~~~~----v~~~~~s~~~~~l~~~g~~dg~i~i~d~  297 (402)
T 2aq5_A          242 MSERQVALWDTK------HLEE--PLSLQELDTSSG----VLLPFFDPDTNIVYLCGKGDSSIRYFEI  297 (402)
T ss_dssp             TCCEEEEEEETT------BCSS--CSEEEECCCCSS----CEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred             CCCceEEEEcCc------cccC--CceEEeccCCCc----eeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence            799999999654      2222  122222 34444    99999999999997554 7999999984

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=5.2e-26  Score=249.77  Aligned_cols=265  Identities=12%  Similarity=0.101  Sum_probs=213.4

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEec------CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccc
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      .+.++++++.+++|++||+.+++++..+..      .+.|.+++|+|++ ..+++++.++.|++|++.++..        
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~--------  203 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAY--------  203 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCE--------
T ss_pred             CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceE--------
Confidence            667888889999999999999998875432      5689999999998 3566666789999999765421        


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeeccC
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKLH  539 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~~  539 (707)
                                                ...+..|...+.+++|+|+|.++++++ .++   .|.+||+.++... ..+...
T Consensus       204 --------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~~~~-~~~~~~  253 (433)
T 3bws_A          204 --------------------------KATVDLTGKWSKILLYDPIRDLVYCSNWISE---DISVIDRKTKLEI-RKTDKI  253 (433)
T ss_dssp             --------------------------EEEEECSSSSEEEEEEETTTTEEEEEETTTT---EEEEEETTTTEEE-EECCCC
T ss_pred             --------------------------EEEEcCCCCCeeEEEEcCCCCEEEEEecCCC---cEEEEECCCCcEE-EEecCC
Confidence                                      112346788999999999999886555 666   9999999988776 666556


Q ss_pred             CCeEEEEEeCCCCEEEEEe---------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEC
Q 005235          540 GLPVSSVFHPTRSIFFVST---------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNL-IVGSREGKLCWFDM  609 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s---------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L-~sGs~Dg~I~vwDl  609 (707)
                      +.+.+++|+|++.+|++++         |+.|++||+.+++.+..+. +...+.+++|+|+|+.| ++++.++.|.+||+
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence            6799999999999988876         5799999999998877663 44578999999999755 66688999999999


Q ss_pred             CCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC---------------CCcEEEEecccccCCCCCCcccceEEeeCCC
Q 005235          610 DLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD---------------DCTAYVFHGMVYSDLNQNPLIVPLEILRGHT  674 (707)
Q Consensus       610 ~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~---------------Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~  674 (707)
                      .++ ++...+. +...+.+++|+|++++|++++.               ||.|++||.      .+..   .+..+.++.
T Consensus       333 ~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~------~~~~---~~~~~~~~~  401 (433)
T 3bws_A          333 KEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT------TTDT---VKEFWEAGN  401 (433)
T ss_dssp             TTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET------TTTE---EEEEEECSS
T ss_pred             CCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC------CCCc---EEEEecCCC
Confidence            876 6666665 6788999999999998888776               579999954      3333   255566543


Q ss_pred             CCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 005235          675 SSNGRGVMDCKFHPRQPWLFTAGA-DSVIRLYCH  707 (707)
Q Consensus       675 ~~~~~gV~~l~fspdg~~L~s~g~-Dg~IrlWdl  707 (707)
                       .    +.+++|+|++++|++++. |++|++|++
T Consensus       402 -~----~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          402 -Q----PTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             -S----EEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             -C----CceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence             3    999999999999998875 999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.4e-26  Score=257.28  Aligned_cols=272  Identities=8%  Similarity=0.008  Sum_probs=197.2

Q ss_pred             CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCC---chh--cccccceeeeccc--------ccccCCCCc--------
Q 005235          418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN---EEE--QRRVKDLLHVETP--------TAPDDNMAS--------  476 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~---~~~--~~~~~~v~~~~~~--------~~~~~~d~~--------  476 (707)
                      .++.+|+|+|+|  .+++++.++.|.+|++.++.   ...  ...........+.        +.....+..        
T Consensus         5 ~p~~~v~~s~dg--~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDG--SLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSS--SEEEEEETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCC--CEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            578899999999  47778889999999998876   210  0000000000000        000000000        


Q ss_pred             -E--EEEecCCccceEEeccCCCeEEEEEcCCCCEE-EEEeCCCCccEEEEEECC--CCceeeeee---ccCCCeEEEEE
Q 005235          477 -I--VSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL-STVMPAGESRAIFMHQLS--KKLSHRIPF---KLHGLPVSSVF  547 (707)
Q Consensus       477 -i--~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-at~s~dg~~~~V~Iwdl~--~~~~~~~~~---~~~~~V~~v~f  547 (707)
                       +  ..|..... ......|.+.|.+++|+|+|++| ++++.|+   .|+||++.  ++... ..+   .+...|.+++|
T Consensus        83 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg---~v~iwd~~~~~~~~~-~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           83 SIKRTAAKVPSP-GLGAPPIYSYIRNLRLTSDESRLIACADSDK---SLLVFDVDKTSKNVL-KLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGT---EEEEEEECSSSSSCE-EEEEEEECSSCEEEEEE
T ss_pred             cccccCccccCC-CCCCCccCCceEEEEEcCCCCEEEEEECCCC---eEEEEECcCCCCcee-eeeecccCCCCceEEEE
Confidence             0  00000000 00123677889999999999996 8888888   99999998  67665 555   55688999999


Q ss_pred             eCCCCEEEEEe-CCeEEEEECCCCeEEE----EEeCCCCCeEEEEEcCC---CCEEEEEECCCcEEEEECCCCCcceEE-
Q 005235          548 HPTRSIFFVST-KKNIRVYDLLKQRLIK----KLETGLKEVSSIAIHPA---GDNLIVGSREGKLCWFDMDLSSKPYRV-  618 (707)
Q Consensus       548 spd~~~l~v~s-dg~I~iwDl~~~~~~~----~l~~~~~~I~sl~~spd---g~~L~sGs~Dg~I~vwDl~~~~~~~~~-  618 (707)
                      +|++.+|++++ ++.|++|++.++....    .+.+|...|++++|+|+   +.+|++|+.|+.|++||+.++ .++.. 
T Consensus       158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~  236 (450)
T 2vdu_B          158 AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-FIVDKW  236 (450)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-TCEEEE
T ss_pred             cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-ceeeee
Confidence            99999999998 8999999998876443    67788899999999999   999999999999999999877 55555 


Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCC---------------------CCC
Q 005235          619 LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT---------------------SSN  677 (707)
Q Consensus       619 l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~---------------------~~~  677 (707)
                      +.+|...|++++|+ ++.+|++|+.|++|+|||+.      ++..   +..+..+.                     ...
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK------TGKN---LSTFDYNSLIKPYLNDQHLAPPRFQNENNDII  306 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETT------TCCE---EEEEECHHHHGGGCCTTSBC----------CB
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECC------CCcE---eeeecchhhhhhhhhhcccccccccccccccc
Confidence            66899999999999 99999999999999999553      3332   34443221                     011


Q ss_pred             CCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235          678 GRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       678 ~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl  707 (707)
                      ...|.+++|+|++++|++++ .|+.|+||++
T Consensus       307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             eEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            23499999999999999999 8999999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=1.2e-26  Score=256.55  Aligned_cols=239  Identities=15%  Similarity=0.224  Sum_probs=198.0

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCC----------CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVES----------GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE  452 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~t----------g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~  452 (707)
                      .|....++++|+.||.|+||++.+          +..+..+.. ...|.+|+|+|++...|++++.++.|++|++..+..
T Consensus       137 ~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  216 (430)
T 2xyi_A          137 MPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK  216 (430)
T ss_dssp             ETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCB
T ss_pred             CCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCC
Confidence            344457999999999999999986          566666666 788999999999844688888899999999876422


Q ss_pred             hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCc-
Q 005235          453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKL-  530 (707)
Q Consensus       453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~-  530 (707)
                      ...     .+                      .......+|...|.+++|+| ++.+|++++.++   .|++||+.+.. 
T Consensus       217 ~~~-----~~----------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg---~i~i~d~~~~~~  266 (430)
T 2xyi_A          217 EHR-----VI----------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ---KLMIWDTRNNNT  266 (430)
T ss_dssp             GGG-----EE----------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCSCS
T ss_pred             CCc-----ee----------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC---eEEEEECCCCCC
Confidence            100     00                      00123458999999999999 778999999988   99999999873 


Q ss_pred             --eeeeee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCc
Q 005235          531 --SHRIPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAGD-NLIVGSREGK  603 (707)
Q Consensus       531 --~~~~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg~-~L~sGs~Dg~  603 (707)
                        .. ..+ .|...|.+++|+|++. +|++++ |+.|++||+++ +.++..+..|...|++++|+|++. +|++|+.||.
T Consensus       267 ~~~~-~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~  345 (430)
T 2xyi_A          267 SKPS-HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR  345 (430)
T ss_dssp             SSCS-EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             Ccce-eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc
Confidence              33 556 8889999999999987 577777 89999999998 567888999999999999999995 7999999999


Q ss_pred             EEEEECCCCC-------------cceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235          604 LCWFDMDLSS-------------KPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       604 I~vwDl~~~~-------------~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~  653 (707)
                      |++||+....             .++..+.+|...|++++|+|+++ +|++++.||.|+||++.
T Consensus       346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            9999998622             56677889999999999999999 99999999999999764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=1.1e-26  Score=256.67  Aligned_cols=263  Identities=17%  Similarity=0.210  Sum_probs=215.3

Q ss_pred             ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCC
Q 005235          297 SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPK  374 (707)
Q Consensus       297 synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~  374 (707)
                      ++.+++.+|++++.          |..+  |.......++.+.++...|       ..+.+                   
T Consensus       138 ~~~~d~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~~~v-------~~l~~-------------------  181 (435)
T 1p22_A          138 CLQYDDQKIVSGLR----------DNTIKIWDKNTLECKRILTGHTGSV-------LCLQY-------------------  181 (435)
T ss_dssp             EEECCSSEEEEEES----------SSCEEEEESSSCCEEEEECCCSSCE-------EEEEC-------------------
T ss_pred             EEEECCCEEEEEeC----------CCeEEEEeCCCCeEEEEEcCCCCcE-------EEEEE-------------------
Confidence            57778999998654          4444  4344455555555554443       33322                   


Q ss_pred             CCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch
Q 005235          375 LPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE  453 (707)
Q Consensus       375 lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~  453 (707)
                                  ++.++++|+.||+|+|||+.+++++..+.. .+.|.+++|+++   .+++++.|+.|++||+.++...
T Consensus       182 ------------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~  246 (435)
T 1p22_A          182 ------------DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDI  246 (435)
T ss_dssp             ------------CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCC
T ss_pred             ------------CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCc
Confidence                        235899999999999999999999998887 789999999854   5999999999999998765321


Q ss_pred             hcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235          454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       454 ~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~  533 (707)
                      .                               ......+|...|.+++|  ++++|++++.|+   .|++||+.++... 
T Consensus       247 ~-------------------------------~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg---~i~vwd~~~~~~~-  289 (435)
T 1p22_A          247 T-------------------------------LRRVLVGHRAAVNVVDF--DDKYIVSASGDR---TIKVWNTSTCEFV-  289 (435)
T ss_dssp             E-------------------------------EEEEECCCSSCEEEEEE--ETTEEEEEETTS---EEEEEETTTCCEE-
T ss_pred             e-------------------------------eeeEecCCCCcEEEEEe--CCCEEEEEeCCC---eEEEEECCcCcEE-
Confidence            0                               01235589999999999  789999999998   9999999999887 


Q ss_pred             eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235          534 IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       534 ~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~  611 (707)
                      ..+ .|...|.+++|+  +.+|++|+ |+.|++||+.+++++..+.+|...|.+++|  ++.+|++|+.||.|++||+..
T Consensus       290 ~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          290 RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             EEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred             EEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence            778 889999999995  67888888 999999999999999999999999999999  688999999999999999975


Q ss_pred             CC--------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          612 SS--------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       612 ~~--------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      +.        .++..+.+|...|++++|  ++.+|++|+.||+|+||++.
T Consensus       366 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             HTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred             CCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence            42        168889999999999999  77889999999999999553

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.9e-27  Score=266.12  Aligned_cols=283  Identities=7%  Similarity=0.016  Sum_probs=201.8

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      ++.+++|+|.|++|+  |..+++++.  .+...|.+|+|+|+|        .++.+.+|+..........+...+.+++|
T Consensus        26 DG~~iASas~D~TV~--d~~~~~~l~--gh~~~v~~V~FsPdg--------~~~~~~~~~~~~~~~~~~~~~~~V~~vaw   93 (588)
T 2j04_A           26 DGTLYLTTFPDISIG--QPKYAKDIN--CNSKNLFHVKEFPLE--------FENKLDFELAQQNGLLNSQPVCYPRVCKP   93 (588)
T ss_dssp             TSCEEEECSSSEEEE--EECCCSCCS--SBGGGTEEEEEECCC--------CCCTTTTSCCCSSCSSTTSCSCCEEEEEE
T ss_pred             CCCEEEEEcCCceee--cccccceec--CCCccEEEEEECCCC--------CcceEEEEeCCCceEeecCCCCcEEEEEE
Confidence            345888888888888  766665551  236778888888877        34444455433222222234666777777


Q ss_pred             c-----ccccCCCCcEEEEecCCccceEEeccCC-----CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce-----
Q 005235          467 P-----TAPDDNMASIVSWLQHDKLDGIRLRHFK-----MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS-----  531 (707)
Q Consensus       467 ~-----~~~~~~d~~i~iW~~~~~~~~~~~~h~~-----~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~-----  531 (707)
                      +     +++++.++.+++|+..+ ....+. |..     .|.+++|||+|++||+|+.||   +|+||++.++..     
T Consensus        94 SPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG---tVkIWd~~~~~l~~~~~  168 (588)
T 2j04_A           94 SPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG---ELQFFSIRKNSENTPEF  168 (588)
T ss_dssp             CSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS---EEEEEECCCCTTTCCCC
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC---EEEEEECCCCccccccc
Confidence            6     77777888888887544 222233 554     599999999999999999999   999999998753     


Q ss_pred             -eeeee-----ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe---EEEEEe-CCCCCeEEEEEcCCCCEEEEEECC
Q 005235          532 -HRIPF-----KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR---LIKKLE-TGLKEVSSIAIHPAGDNLIVGSRE  601 (707)
Q Consensus       532 -~~~~~-----~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~---~~~~l~-~~~~~I~sl~~spdg~~L~sGs~D  601 (707)
                       ....+     +|.+.|.+++|+|+| +++++.|++|++||+..+.   ...++. +|...|.+++|+  |..||+++ +
T Consensus       169 i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~  244 (588)
T 2j04_A          169 YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P  244 (588)
T ss_dssp             EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S
T ss_pred             eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C
Confidence             11332     456799999999999 4444449999999998876   345674 677889999999  68999987 6


Q ss_pred             CcEEEEECCCCCcceEEeecCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecccccCCCCCCcc---------------
Q 005235          602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAF--HRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLI---------------  664 (707)
Q Consensus       602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vaf--spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~---------------  664 (707)
                      +.|++||+..+ .......+|...|.+++|  +|++..|++++.||+ +||...... ......+               
T Consensus       245 ~tIkLWd~~~~-~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~-~spd~~l~a~~d~~v~lW~~~g  321 (588)
T 2j04_A          245 GYVHKIDLKNY-SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELH-VTADNIIAPYLEKKFKKWSTIW  321 (588)
T ss_dssp             SEEEEEETTTT-EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEE-EECCCSSHHHHHHHHHHTTTTT
T ss_pred             CeEEEEECCCC-eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEE-ECCCceEEEEcCCEEEEEECCC
Confidence            99999999865 432333389999999999  999999999999999 999763211 1100000               


Q ss_pred             cceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          665 VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       665 ~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                      .++..+.+ .    ..|.+++|||+|+.||+++.
T Consensus       322 ~~l~~~~~-~----~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          322 NEFNNYET-T----LVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             TSSSSSCC-E----EEEEEEEECTTSSEEEEEEE
T ss_pred             Cceeeecc-c----eEEEEEEECCCCCEEEEEEe
Confidence            01122222 2    23999999999999999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=9.5e-27  Score=254.43  Aligned_cols=285  Identities=12%  Similarity=0.090  Sum_probs=182.6

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCC-------C---eEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235          386 VACYLEYKGSTDGTVRIWEVES-------G---RCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~t-------g---~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~  455 (707)
                      ....+++.| .|+.|++|+...       +   ..+..+.....+.++.|++..  .....+.++.+.+-....      
T Consensus        29 ~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------   99 (393)
T 4gq1_A           29 SCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSC--SYSENLHDGDGNVNSSPV------   99 (393)
T ss_dssp             GGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTC--EEECC----------CCE------
T ss_pred             CCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCc--cccccccCCCcceeecCC------
Confidence            334455555 577899997532       1   233344446778888887654  111111111111000000      


Q ss_pred             ccccceeeecccccccCCCCcEEEEecCCccce------EEeccCCCeEEEEEcC--------CCCEEEEEeCCCCccEE
Q 005235          456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG------IRLRHFKMVSSVEWHR--------RGDYLSTVMPAGESRAI  521 (707)
Q Consensus       456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~------~~~~h~~~V~~v~~sp--------~g~~lat~s~dg~~~~V  521 (707)
                              ....+++++.|++|++|+.......      .+.+|.+.|.+|+|+|        +|.+||+++.|+   +|
T Consensus       100 --------~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~---tv  168 (393)
T 4gq1_A          100 --------YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC---TL  168 (393)
T ss_dssp             --------EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS---EE
T ss_pred             --------CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC---eE
Confidence                    0000345556666666666544321      1458999999999998        789999999998   99


Q ss_pred             EEEECCCCceeeeee-ccCCCeEEEEEeCCCC-EEEEEe-CCeEEEEECCCCeEEEEE----------------------
Q 005235          522 FMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS-IFFVST-KKNIRVYDLLKQRLIKKL----------------------  576 (707)
Q Consensus       522 ~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~-~l~v~s-dg~I~iwDl~~~~~~~~l----------------------  576 (707)
                      +|||+.++... ..+ .+...|.+++|+|++. +|++++ |++|++||+.+++....+                      
T Consensus       169 ~~Wd~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          169 IIWRLTDEGPI-LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             EEEEEETTEEE-EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             EEEECCCCcee-eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence            99999888776 445 8999999999999875 677877 999999999887543322                      


Q ss_pred             ---eCCCCCeEEEEEc-CCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEc------------------C-
Q 005235          577 ---ETGLKEVSSIAIH-PAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFH------------------R-  633 (707)
Q Consensus       577 ---~~~~~~I~sl~~s-pdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafs------------------p-  633 (707)
                         .+|...+.++.|+ |+|..|++++.|+.+++||+..+ .....+..|...+..+.+.                  | 
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence               3466678888886 89999999999999999999876 4455565565555444333                  3 


Q ss_pred             -CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          634 -SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       634 -dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                       ++.++++|+.||+|+|||+.      +...   +..+.+|...    |.+++|||+|++||+++.+| +.+|.
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~------~~~~---~~~~~~~~~~----V~svafspdG~~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTY------EKDS---NSIPIQLGMP----IVDFCWHQDGSHLAIATEGS-VLLTR  386 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETT------CTTC---CEEEEECSSC----EEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECC------CCcE---EEEecCCCCc----EEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence             23367788899999999643      3332   5566778777    99999999999999999777 44443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=2.3e-26  Score=241.86  Aligned_cols=313  Identities=13%  Similarity=0.126  Sum_probs=201.8

Q ss_pred             CCCCCCCCcc-----ccCCCCCccCChh---hhhhhhccCcCCCCcccCcccceecccccccccccccceeeeeEEEcCc
Q 005235          287 PKPKLPGHEE-----SYNPSLEYIPTQE---ELNSYQLMYEEDRPKFIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPR  358 (707)
Q Consensus       287 pk~~lpgh~~-----synP~ge~L~s~~---~~~~W~~~~~~dr~~~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr  358 (707)
                      ....+.||..     +|+|++.+|++.+   .++.|+.....       .....+..+.+       |...+..+.|+|.
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~-------~~~~v~~~~~~~~   68 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-------SNWELSDSWRA-------HDSSIVAIDWASP   68 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS-------CCEEEEEEEEC-------CSSCEEEEEECCG
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-------Ccceecceecc-------CCCcEEEEEEcCC
Confidence            4456778887     5999999999854   45566532211       00112233333       3344477777763


Q ss_pred             cccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC---------eEEEEEec-CCcEEEEEEccC
Q 005235          359 VRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG---------RCLRVLEI-GEAIQYVAWNPL  428 (707)
Q Consensus       359 ~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg---------~~l~~l~~-~~~V~~v~~spd  428 (707)
                      .                           ++.++++|+.||+|+|||+.++         +++..+.. .+.|.+++|+|+
T Consensus        69 ~---------------------------d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  121 (351)
T 3f3f_A           69 E---------------------------YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA  121 (351)
T ss_dssp             G---------------------------GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCG
T ss_pred             C---------------------------CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCC
Confidence            1                           2358999999999999999987         56777765 789999999999


Q ss_pred             --CCccEEEEEeCCeEEEEECCCCCchhcccc-cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC
Q 005235          429 --PELPVLAVSVGQDVLILNTGLGNEEEQRRV-KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR  505 (707)
Q Consensus       429 --g~~~lla~s~d~~V~lwd~~~~~~~~~~~~-~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~  505 (707)
                        + ..+++++.|+.|++||+.++........ ..+..                      .......|...+.+++|+|+
T Consensus       122 ~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~p~  178 (351)
T 3f3f_A          122 HLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV----------------------LSIPPANHLQSDFCLSWCPS  178 (351)
T ss_dssp             GGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES----------------------CSCCCSSCSCCCEEEEECCC
T ss_pred             CCC-cEEEEecCCCcEEEecCCChHHhccccccccccc----------------------cccccCCcccceeEEEeccC
Confidence              7 4788889999999999887643211000 00000                      00012367889999999997


Q ss_pred             ---CCEEEEEeCCCCccEEEEEECCCCcee-eeee-ccCCCeEEEEEeCCC----CEEEEEe-CCeEEEEECCCCeEEEE
Q 005235          506 ---GDYLSTVMPAGESRAIFMHQLSKKLSH-RIPF-KLHGLPVSSVFHPTR----SIFFVST-KKNIRVYDLLKQRLIKK  575 (707)
Q Consensus       506 ---g~~lat~s~dg~~~~V~Iwdl~~~~~~-~~~~-~~~~~V~~v~fspd~----~~l~v~s-dg~I~iwDl~~~~~~~~  575 (707)
                         +.+|++++.++   .+.+|+...+... ...+ .|.+.|.+++|+|++    .+|++++ |+.|++||+..+.....
T Consensus       179 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  255 (351)
T 3f3f_A          179 RFSPEKLAVSALEQ---AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA  255 (351)
T ss_dssp             SSSCCEEEEEETTE---EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred             CCCCcEEEEecCCC---cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence               99999999988   8888887776652 1455 789999999999998    7888888 89999999987755544


Q ss_pred             EeCCCCCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          576 LETGLKEVSSIAIHPAGDNLIVGSR----EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       576 l~~~~~~I~sl~~spdg~~L~sGs~----Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      ...+...+.....++....++.+..    ...+.+|+.... .++..+.+|...|++++|+|++++|++|+.||.|+||+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  334 (351)
T 3f3f_A          256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV-ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK  334 (351)
T ss_dssp             -----------------------------------CCSEEE-EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             cCCcccceeccCCCcccccccccccccccceeeeecccccc-cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            4444344445555555555544433    344555555444 67788899999999999999999999999999999995


Q ss_pred             cccccCCCCCCcccceEEeeCC
Q 005235          652 GMVYSDLNQNPLIVPLEILRGH  673 (707)
Q Consensus       652 ~~~~~Dl~~~~~~~pl~~l~gh  673 (707)
                      +      .......++..+..|
T Consensus       335 ~------~~~~~~~~~~~~~~~  350 (351)
T 3f3f_A          335 A------TYSNEFKCMSVITAQ  350 (351)
T ss_dssp             E------CTTSCEEEEEEEC--
T ss_pred             c------CcCcchhheeehccc
Confidence            4      444454556655544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=6.8e-26  Score=241.25  Aligned_cols=261  Identities=16%  Similarity=0.126  Sum_probs=205.3

Q ss_pred             EEeCCCCeEEEEEec-CCcEEEEEEccCC--CccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEE
Q 005235          402 IWEVESGRCLRVLEI-GEAIQYVAWNPLP--ELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIV  478 (707)
Q Consensus       402 IWd~~tg~~l~~l~~-~~~V~~v~~spdg--~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~  478 (707)
                      .|+....+.+..+.. .+.|++|+|+|++  ...|++++.|+.|++|++.+....                         
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-------------------------   77 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-------------------------   77 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-------------------------
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-------------------------
Confidence            344555666666655 7899999999993  247888889999999998652110                         


Q ss_pred             EEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEE--eCCCCEEEE
Q 005235          479 SWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVF--HPTRSIFFV  556 (707)
Q Consensus       479 iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~f--spd~~~l~v  556 (707)
                             ....+.+|...|.+++|+|++++|++++.|+   .|++||+.++... ..+.|...|.+++|  +|++.+|++
T Consensus        78 -------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~  146 (368)
T 3mmy_A           78 -------IPKAQQMHTGPVLDVCWSDDGSKVFTASCDK---TAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMT  146 (368)
T ss_dssp             -------EEEEEEECSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEE-EEEECSSCEEEEEEEECSSCEEEEE
T ss_pred             -------eEEEeccccCCEEEEEECcCCCEEEEEcCCC---cEEEEEcCCCCce-eeccccCceEEEEEEeCCCCCEEEE
Confidence                   0123557999999999999999999999998   9999999998876 54489999999999  899999999


Q ss_pred             Ee-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-cCCCCEEEEEEcCC
Q 005235          557 ST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-CHPKDITNVAFHRS  634 (707)
Q Consensus       557 ~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-~h~~~I~~vafspd  634 (707)
                      ++ |+.|++||+.+++++..+..+ ..+.++.+.  +..+++++.++.+.+|++.........+. .+...+.++++.++
T Consensus       147 ~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (368)
T 3mmy_A          147 GSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD  223 (368)
T ss_dssp             EETTSEEEEECSSCSSCSEEEECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCcEEEEEecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence            88 999999999999988888876 467777766  45899999999999999987654444443 23456677777666


Q ss_pred             CCE----EEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCC--------CCeeEEEEcCCCCEEEEEeCCCcE
Q 005235          635 YPL----FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG--------RGVMDCKFHPRQPWLFTAGADSVI  702 (707)
Q Consensus       635 g~l----laSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~--------~gV~~l~fspdg~~L~s~g~Dg~I  702 (707)
                      ...    +++|+.||.|+||++      .......++..+.+|.....        ..|.+++|+|++.+|++++.||.|
T Consensus       224 ~~~~~~~~~~~~~dg~i~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i  297 (368)
T 3mmy_A          224 KQNKPTGFALGSIEGRVAIHYI------NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF  297 (368)
T ss_dssp             TTSCEEEEEEEETTSEEEEEES------SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCE
T ss_pred             CCCCCCeEEEecCCCcEEEEec------CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeE
Confidence            554    999999999999955      33333345677888865100        029999999999999999999999


Q ss_pred             EEEeC
Q 005235          703 RLYCH  707 (707)
Q Consensus       703 rlWdl  707 (707)
                      ++||+
T Consensus       298 ~iwd~  302 (368)
T 3mmy_A          298 SFWDK  302 (368)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.4e-27  Score=276.49  Aligned_cols=229  Identities=17%  Similarity=0.169  Sum_probs=193.8

Q ss_pred             cEEEEEeCCCcEEEEeCC--CCeEEEEEec-CCcEEEEEEccC--CCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          389 YLEYKGSTDGTVRIWEVE--SGRCLRVLEI-GEAIQYVAWNPL--PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~--tg~~l~~l~~-~~~V~~v~~spd--g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      .++++|+.||+|+||++.  +++++..+.. .+.|.+++|+|+  + ..+++++.|+.|++|++.++...          
T Consensus        22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~----------   90 (753)
T 3jro_A           22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWS----------   90 (753)
T ss_dssp             CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEEE----------
T ss_pred             CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCccc----------
Confidence            489999999999999998  5567777765 789999999988  6 47888999999999997654210          


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC--CCEEEEEeCCCCccEEEEEECCCCceee-eee-ccC
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR--GDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLH  539 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~--g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~  539 (707)
                                            .......|...|.+++|+|+  |.+|++++.||   .|++||+....... ..+ .+.
T Consensus        91 ----------------------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg---~I~vwdl~~~~~~~~~~~~~~~  145 (753)
T 3jro_A           91 ----------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---KVSVVEFKENGTTSPIIIDAHA  145 (753)
T ss_dssp             ----------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEECCSSSCCCCEEEECCS
T ss_pred             ----------------------ccccccCCCCCeEEEEECCCCCCCEEEEEeCCC---cEEEEEeecCCCcceeEeecCC
Confidence                                  11234579999999999999  99999999998   99999998874331 344 888


Q ss_pred             CCeEEEEEeC-------------CCCEEEEEe-CCeEEEEECCCC----eEEEEEeCCCCCeEEEEEcCC---CCEEEEE
Q 005235          540 GLPVSSVFHP-------------TRSIFFVST-KKNIRVYDLLKQ----RLIKKLETGLKEVSSIAIHPA---GDNLIVG  598 (707)
Q Consensus       540 ~~V~~v~fsp-------------d~~~l~v~s-dg~I~iwDl~~~----~~~~~l~~~~~~I~sl~~spd---g~~L~sG  598 (707)
                      ..|.+++|+|             ++.+|++|+ ||.|++||+.++    .+...+.+|...|++++|+|+   |.+|++|
T Consensus       146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~  225 (753)
T 3jro_A          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  225 (753)
T ss_dssp             SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence            9999999999             588899888 999999999876    677788899999999999999   8999999


Q ss_pred             ECCCcEEEEECCCCCc----ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          599 SREGKLCWFDMDLSSK----PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       599 s~Dg~I~vwDl~~~~~----~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      +.||.|++||+..+..    .......|...|++++|+|++.+|++|+.||.|+||++.
T Consensus       226 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             ecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            9999999999987531    233344688899999999999999999999999999876

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.9e-24  Score=233.99  Aligned_cols=221  Identities=16%  Similarity=0.143  Sum_probs=182.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPT  468 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~  468 (707)
                      ++++++.|++|++||+.+++++..+.....|.+++|+|++. .+++++ .++.|.+||+.++..                
T Consensus        46 l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~~v~v~d~~~~~~----------------  108 (391)
T 1l0q_A           46 VYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGK-QVYVTNMASSTLSVIDTTSNTV----------------  108 (391)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEE----------------
T ss_pred             EEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCC-EEEEEECCCCEEEEEECCCCeE----------------
Confidence            45788899999999999999999999888999999999994 455555 468999999766421                


Q ss_pred             cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEE-EEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEE
Q 005235          469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL-STVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVF  547 (707)
Q Consensus       469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-at~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~f  547 (707)
                                         .....+...+.+++|+|+|++| ++++.++   .|.+||+.+++.. ..+.....+.+++|
T Consensus       109 -------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---~v~~~d~~~~~~~-~~~~~~~~~~~~~~  165 (391)
T 1l0q_A          109 -------------------AGTVKTGKSPLGLALSPDGKKLYVTNNGDK---TVSVINTVTKAVI-NTVSVGRSPKGIAV  165 (391)
T ss_dssp             -------------------EEEEECSSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTTEEE-EEEECCSSEEEEEE
T ss_pred             -------------------EEEEeCCCCcceEEECCCCCEEEEEeCCCC---EEEEEECCCCcEE-EEEecCCCcceEEE
Confidence                               1122345678999999999988 5666666   9999999988776 66655567899999


Q ss_pred             eCCCCEEEEE-e-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCCCcceEEeecC
Q 005235          548 HPTRSIFFVS-T-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS---REGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       548 spd~~~l~v~-s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs---~Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                      +|++..|+++ . ++.|++||+.+++.+..+.. ...+.+++|+|+|.+|++++   .++.|++||+.++ +++..+..|
T Consensus       166 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~  243 (391)
T 1l0q_A          166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVG  243 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECC
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-eEEEEEecC
Confidence            9999988654 4 79999999999988887765 46799999999999999988   6899999999877 677778776


Q ss_pred             CCCEEEEEEcCCCCEE-EEEeCCCcEEEEecc
Q 005235          623 PKDITNVAFHRSYPLF-ASCSDDCTAYVFHGM  653 (707)
Q Consensus       623 ~~~I~~vafspdg~ll-aSgs~Dg~I~Vwd~~  653 (707)
                      . .+.+++|+|++++| ++++.|+.|++||+.
T Consensus       244 ~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          244 P-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             S-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             C-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            5 58999999999866 677899999999653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.1e-25  Score=240.67  Aligned_cols=196  Identities=10%  Similarity=0.008  Sum_probs=154.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC---------CCceeeeee--ccCCCeEEEEEeC--CCCEEEEEe-C
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS---------KKLSHRIPF--KLHGLPVSSVFHP--TRSIFFVST-K  559 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~---------~~~~~~~~~--~~~~~V~~v~fsp--d~~~l~v~s-d  559 (707)
                      ...|.++.|+|.   +++++.|+   .|++|+..         +.... ..+  .+.+.|.+++|+|  ++.+|++++ |
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~---~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d  148 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCN---RLLLLYPGNQITILDSKTNKVL-REIEVDSANEIIYMYGHNEVNTEYFIWADNR  148 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTT---EEEEEETTTEEEEEETTTCCEE-EEEECCCSSCEEEEECCC---CCEEEEEETT
T ss_pred             cCCceeeeeCCc---eEEecCCC---eEEEEEccCceEEeecCCccee-EEeecCCCCCEEEEEcCCCCCCCEEEEEeCC
Confidence            356777888887   89999988   99999765         44433 333  6668899999999  999999988 9


Q ss_pred             CeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec-CCCCEEEEEEcCCCCE
Q 005235          560 KNIRVYDLLKQRLIKKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC-HPKDITNVAFHRSYPL  637 (707)
Q Consensus       560 g~I~iwDl~~~~~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-h~~~I~~vafspdg~l  637 (707)
                      ++|++||+.+++++..+.. +...|++++|+|+|.+|++|+.||.|++||++++......+.. |...|++++|+|++.+
T Consensus       149 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~  228 (343)
T 3lrv_A          149 GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW  228 (343)
T ss_dssp             CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE
T ss_pred             CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE
Confidence            9999999999988776644 4457999999999999999999999999999988444378888 9999999999999999


Q ss_pred             EEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCee--EEEEcCCCCEEEEEeC-CCcEEEEeC
Q 005235          638 FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVM--DCKFHPRQPWLFTAGA-DSVIRLYCH  707 (707)
Q Consensus       638 laSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~--~l~fspdg~~L~s~g~-Dg~IrlWdl  707 (707)
                      |+++++ ++|+|||++      +......+..+..|...    +.  +++|+|++++|++++. |+.|+||++
T Consensus       229 l~s~~~-~~v~iwd~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          229 MVVECD-QTVVCFDLR------KDVGTLAYPTYTIPEFK----TGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             EEEEES-SBEEEEETT------SSTTCBSSCCCBC---------CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEeC-CeEEEEEcC------CCCcceeeccccccccc----ccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            999995 499999654      33332223333334433    44  6999999999999998 999999974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=7.5e-25  Score=236.01  Aligned_cols=255  Identities=12%  Similarity=0.049  Sum_probs=190.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh-cccccceeeecc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE-QRRVKDLLHVET  466 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~-~~~~~~v~~~~~  466 (707)
                      +.++++|+.+| ++||++.+++++...... .+..++|.++++..+++++.+++|++||+.++.... ..+...+.++.+
T Consensus        31 g~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~  108 (355)
T 3vu4_A           31 QSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFL  108 (355)
T ss_dssp             SSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             CCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEE
Confidence            35888888776 789999998877665543 478888998884333455677899999998875421 123445666655


Q ss_pred             c--ccccCCCCcEEEEecCCc-cce-EEeccCCCeEEEEEcCCCCEEEEE--eCCCCccEEEEEECCCCc----------
Q 005235          467 P--TAPDDNMASIVSWLQHDK-LDG-IRLRHFKMVSSVEWHRRGDYLSTV--MPAGESRAIFMHQLSKKL----------  530 (707)
Q Consensus       467 ~--~~~~~~d~~i~iW~~~~~-~~~-~~~~h~~~V~~v~~sp~g~~lat~--s~dg~~~~V~Iwdl~~~~----------  530 (707)
                      .  ......++.+++|++... ... .+..   ....+++++  .+++++  +.+|   .|++||+.++.          
T Consensus       109 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g---~v~iwd~~~~~~~~~~~~~~~  180 (355)
T 3vu4_A          109 SREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLG---QIHITKLQSSGSATTQDQGVQ  180 (355)
T ss_dssp             CSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTT---CEEEEECCC------------
T ss_pred             cCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCc---EEEEEECCCCCcccccccccc
Confidence            5  222234788999999866 222 2222   445566776  677774  5666   99999999765          


Q ss_pred             ------eeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCe-EEEEECCCCeEEEEEe-C-CCCCeEEEEEcCCCCEEEEEE
Q 005235          531 ------SHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKN-IRVYDLLKQRLIKKLE-T-GLKEVSSIAIHPAGDNLIVGS  599 (707)
Q Consensus       531 ------~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~-I~iwDl~~~~~~~~l~-~-~~~~I~sl~~spdg~~L~sGs  599 (707)
                            .. ..+ .|.+.|.+++|+|++.+|++|+ |++ |++||+.+++++.++. + |...|.+++|+|+|.+|++|+
T Consensus       181 ~~~~~p~~-~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s  259 (355)
T 3vu4_A          181 QKAILGKG-VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS  259 (355)
T ss_dssp             ------CC-EEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred             ccccCccc-EEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence                  13 556 8999999999999999999999 898 9999999999999998 5 889999999999999999999


Q ss_pred             CCCcEEEEECCCCCc-ceEEee---------------------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          600 REGKLCWFDMDLSSK-PYRVLK---------------------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       600 ~Dg~I~vwDl~~~~~-~~~~l~---------------------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .|+.|++||+..... ....+.                     .+......++|++++.+|++++.||.+++|++.
T Consensus       260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          260 DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            999999999975421 111111                     112234679999999999999999999999654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=2.2e-25  Score=243.59  Aligned_cols=231  Identities=10%  Similarity=0.021  Sum_probs=167.3

Q ss_pred             CCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE-----ec-CCcEEEEEEcc--------CCCccEEEEEeCCeEEEE
Q 005235          380 DLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVL-----EI-GEAIQYVAWNP--------LPELPVLAVSVGQDVLIL  445 (707)
Q Consensus       380 ~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l-----~~-~~~V~~v~~sp--------dg~~~lla~s~d~~V~lw  445 (707)
                      .+..++....++++|+.|++|+|||+.++.+....     .+ .+.|++|+|+|        ++ ..|++++.|++|+||
T Consensus        93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~W  171 (393)
T 4gq1_A           93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIW  171 (393)
T ss_dssp             ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEE
T ss_pred             ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEE
Confidence            34457778889999999999999999998775432     22 78999999998        66 478888899999999


Q ss_pred             ECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCC-EEEEEeCCCCccEEEEE
Q 005235          446 NTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD-YLSTVMPAGESRAIFMH  524 (707)
Q Consensus       446 d~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iw  524 (707)
                      |+.++..                                  ......|...|.+++|+|++. +|++++.|+   .|++|
T Consensus       172 d~~~~~~----------------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~---~v~~w  214 (393)
T 4gq1_A          172 RLTDEGP----------------------------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNG---NIRIF  214 (393)
T ss_dssp             EEETTEE----------------------------------EEEEEECSSCEEEEEEETTEEEEEEEEETTS---EEEEE
T ss_pred             ECCCCce----------------------------------eeeecCCCCCcEEEEECCCCCceEEecCCCC---EEEEE
Confidence            9755421                                  123557899999999999875 799999998   99999


Q ss_pred             ECCCCceeeee-------------------------e-ccCCCeEEEEEe-CCCCEEEEEe-CCeEEEEECCCCeEEEEE
Q 005235          525 QLSKKLSHRIP-------------------------F-KLHGLPVSSVFH-PTRSIFFVST-KKNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       525 dl~~~~~~~~~-------------------------~-~~~~~V~~v~fs-pd~~~l~v~s-dg~I~iwDl~~~~~~~~l  576 (707)
                      |+.++... ..                         . .+...+.++.|+ |++..|++++ |+++++||+..++....+
T Consensus       215 d~~t~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l  293 (393)
T 4gq1_A          215 DWTLNLSA-EENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI  293 (393)
T ss_dssp             ETTCCC-----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------
T ss_pred             ECCCCccc-ccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE
Confidence            99876543 11                         1 355678889987 7999999998 899999999988777666


Q ss_pred             eCCCCCeEEEEEcC--------------------CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC
Q 005235          577 ETGLKEVSSIAIHP--------------------AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP  636 (707)
Q Consensus       577 ~~~~~~I~sl~~sp--------------------dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~  636 (707)
                      ..+...+..+.+.|                    ++.++++|+.||.|++||+.++ .+...+..|..+|++|+|||+|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~-~~~~~~~~~~~~V~svafspdG~  372 (393)
T 4gq1_A          294 SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK-DSNSIPIQLGMPIVDFCWHQDGS  372 (393)
T ss_dssp             ----------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT-TCCEEEEECSSCEEEEEECTTSS
T ss_pred             eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC-cEEEEecCCCCcEEEEEEcCCCC
Confidence            66555444443333                    3346778889999999999987 66777788999999999999999


Q ss_pred             EEEEEeCCCcEEEEe
Q 005235          637 LFASCSDDCTAYVFH  651 (707)
Q Consensus       637 llaSgs~Dg~I~Vwd  651 (707)
                      +||+++++| +.+|.
T Consensus       373 ~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          373 HLAIATEGS-VLLTR  386 (393)
T ss_dssp             EEEEEESSE-EEEEE
T ss_pred             EEEEEeCCC-eEEEE
Confidence            999999877 55563

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=3.2e-24  Score=236.46  Aligned_cols=270  Identities=12%  Similarity=0.133  Sum_probs=206.1

Q ss_pred             ccCCCCcEEEEEe----CCC----cEEEEeC--CCCeEEEE--Eec-CCcEEEEEEccC--------------CCccEEE
Q 005235          383 PYPVACYLEYKGS----TDG----TVRIWEV--ESGRCLRV--LEI-GEAIQYVAWNPL--------------PELPVLA  435 (707)
Q Consensus       383 pfp~~~~~l~sgs----~Dg----tVrIWd~--~tg~~l~~--l~~-~~~V~~v~~spd--------------g~~~lla  435 (707)
                      +.+....++++|+    .||    +|+|||+  .+|+++..  +.. ...+.++++++.              + ..++.
T Consensus        70 w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~-~~l~~  148 (415)
T 2hqs_A           70 WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR-TRIAY  148 (415)
T ss_dssp             HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT-CEEEE
T ss_pred             HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC-CEEEE
Confidence            3456667888886    568    9999999  99998744  544 455666666641              3 24666


Q ss_pred             EEeC------CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEE
Q 005235          436 VSVG------QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL  509 (707)
Q Consensus       436 ~s~d------~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~l  509 (707)
                      ++.+      +.|++||+.                                   +.....+..|...|.+++|+|+|++|
T Consensus       149 ~s~~~~~~~~~~i~i~d~~-----------------------------------g~~~~~l~~~~~~v~~~~~Spdg~~l  193 (415)
T 2hqs_A          149 VVQTNGGQFPYELRVSDYD-----------------------------------GYNQFVVHRSPQPLMSPAWSPDGSKL  193 (415)
T ss_dssp             EEECSSSSCCEEEEEEETT-----------------------------------SCSCEEEEEESSCEEEEEECTTSSEE
T ss_pred             EEecCCCCccceEEEEcCC-----------------------------------CCCCEEEeCCCCcceeeEEcCCCCEE
Confidence            6554      466666653                                   33333466788999999999999999


Q ss_pred             EEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEE-EEe-C--CeEEEEECCCCeEEEEEeCCCCCeEE
Q 005235          510 STVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF-VST-K--KNIRVYDLLKQRLIKKLETGLKEVSS  585 (707)
Q Consensus       510 at~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~-v~s-d--g~I~iwDl~~~~~~~~l~~~~~~I~s  585 (707)
                      ++++.++....|++||+.++... ....+.+.+.+++|+|+|+.|+ +++ +  ..|++||+.++++ ..+..+...+.+
T Consensus       194 a~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~  271 (415)
T 2hqs_A          194 AYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE  271 (415)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred             EEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence            99998765569999999988764 3337788999999999999888 444 4  4599999998876 567778788999


Q ss_pred             EEEcCCCCEEEEEECC-C--cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccCCC
Q 005235          586 IAIHPAGDNLIVGSRE-G--KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD---CTAYVFHGMVYSDLN  659 (707)
Q Consensus       586 l~~spdg~~L~sGs~D-g--~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~  659 (707)
                      ++|+|+|++|++++.+ +  .|.+||+.++ . ...+..|...+.+++|+|+|++|++++.+   +.|++|+.      .
T Consensus       272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~------~  343 (415)
T 2hqs_A          272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL------A  343 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTSS-C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET------T
T ss_pred             eEECCCCCEEEEEECCCCCcEEEEEECCCC-C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC------C
Confidence            9999999999988864 4  6777888765 3 45566777889999999999999888764   58999954      3


Q ss_pred             CCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC---cEEEEeC
Q 005235          660 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS---VIRLYCH  707 (707)
Q Consensus       660 ~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg---~IrlWdl  707 (707)
                      ++.    +..+..|. .    +.+++|+|+|++|++++.++   .|++|++
T Consensus       344 ~~~----~~~l~~~~-~----~~~~~~spdg~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          344 TGG----VQVLSSTF-L----DETPSLAPNGTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             TCC----EEECCCSS-S----CEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             CCC----EEEecCCC-C----cCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence            333    34455554 4    99999999999999988877   7999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=3e-23  Score=227.69  Aligned_cols=277  Identities=14%  Similarity=0.156  Sum_probs=208.9

Q ss_pred             ccccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCC
Q 005235          295 EESYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLK  372 (707)
Q Consensus       295 ~~synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~ll  372 (707)
                      .-+|+|.+.++++...          +..+  |.+.....++.++.  .....+...+..+.++|+.             
T Consensus       127 ~~~~s~~~~~~~~~~~----------~~~i~~~d~~~g~~~~~~~~--~~~~~~~~~v~~~~~~~~~-------------  181 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLE----------DEGMDVLDINSGQTVRLSPP--EKYKKKLGFVETISIPEHN-------------  181 (433)
T ss_dssp             CCEESSSSEEEEEBTT----------SSSEEEEETTTCCEEEECCC--HHHHTTCCEEEEEEEGGGT-------------
T ss_pred             EEEEeCCCeEEEEeCC----------CCeEEEEECCCCeEeeecCc--ccccccCCceeEEEEcCCC-------------
Confidence            4479997777766433          2222  33334444433221  0123444555667776554             


Q ss_pred             CCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCC
Q 005235          373 PKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLG  450 (707)
Q Consensus       373 p~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~  450 (707)
                                      .++++++.|+.|++||+.+++++..+.. ...+.+++|+|++. .+++++ .++.|.+||+.++
T Consensus       182 ----------------~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          182 ----------------ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD-LVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             ----------------EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT-EEEEEETTTTEEEEEETTTT
T ss_pred             ----------------EEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC-EEEEEecCCCcEEEEECCCC
Confidence                            4899999999999999999999988876 77899999999994 455555 6889999997654


Q ss_pred             CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC-----CccEEEEEE
Q 005235          451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG-----ESRAIFMHQ  525 (707)
Q Consensus       451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg-----~~~~V~Iwd  525 (707)
                      ..                                   .....+...+.+++|+|+|++|++++.+.     .++.|.+||
T Consensus       245 ~~-----------------------------------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d  289 (433)
T 3bws_A          245 LE-----------------------------------IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS  289 (433)
T ss_dssp             EE-----------------------------------EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred             cE-----------------------------------EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence            21                                   01223345589999999999999888421     133999999


Q ss_pred             CCCCceeeeeeccCCCeEEEEEeCCCCEEEEE-e-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC---
Q 005235          526 LSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVS-T-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR---  600 (707)
Q Consensus       526 l~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~-s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~---  600 (707)
                      +.++... ..+.+.+.+.+++|+|+++.++++ + ++.|++||+.+++.+..+. +...+.+++|+|+|.+|++++.   
T Consensus       290 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~  367 (433)
T 3bws_A          290 MDKEKLI-DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPN  367 (433)
T ss_dssp             TTTTEEE-EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCC
T ss_pred             CCCCcEE-eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCC
Confidence            9988765 555666689999999999877655 4 8999999999999888876 5577999999999999998877   


Q ss_pred             ------------CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q 005235          601 ------------EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS-DDCTAYVFHG  652 (707)
Q Consensus       601 ------------Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~  652 (707)
                                  ||.|++||+.++ +.+..+.. ...+.+++|+|++++|++++ .|++|+||++
T Consensus       368 ~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          368 HPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             CTTTCTTSCCSSCCEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccceEEEEEECCCC-cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence                        579999999876 67777775 45799999999999988877 4999999965

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=1.1e-22  Score=232.04  Aligned_cols=323  Identities=9%  Similarity=0.023  Sum_probs=230.7

Q ss_pred             ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCC
Q 005235          297 SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPK  374 (707)
Q Consensus       297 synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~  374 (707)
                      .|+|++.++++...          +..+  |.......+..++....        +..+.++|++               
T Consensus       144 ~~~p~~~~~vs~~~----------d~~V~v~D~~t~~~~~~i~~g~~--------~~~v~~spdg---------------  190 (543)
T 1nir_A          144 DLDLPNLFSVTLRD----------AGQIALVDGDSKKIVKVIDTGYA--------VHISRMSASG---------------  190 (543)
T ss_dssp             CCCGGGEEEEEEGG----------GTEEEEEETTTCCEEEEEECSTT--------EEEEEECTTS---------------
T ss_pred             ccCCCCEEEEEEcC----------CCeEEEEECCCceEEEEEecCcc--------cceEEECCCC---------------
Confidence            48999888877543          3333  44455556666642111        2356666655               


Q ss_pred             CCCCCCCcccCCCCcEEEEEeCCCcEEEEeC--CCCeEEEEEecCCcEEEEEEcc----CCCccEEEEE-eCCeEEEEEC
Q 005235          375 LPSRKDLKPYPVACYLEYKGSTDGTVRIWEV--ESGRCLRVLEIGEAIQYVAWNP----LPELPVLAVS-VGQDVLILNT  447 (707)
Q Consensus       375 lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~--~tg~~l~~l~~~~~V~~v~~sp----dg~~~lla~s-~d~~V~lwd~  447 (707)
                                    .++|+++.|++|++||+  .+++++.++.....+.+++|+|    +|. .+++++ .+++|.+||.
T Consensus       191 --------------~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~  255 (543)
T 1nir_A          191 --------------RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDG  255 (543)
T ss_dssp             --------------CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEET
T ss_pred             --------------CEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEec
Confidence                          48999999999999999  8999999999888899999999    994 566665 5899999998


Q ss_pred             CCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc-CCCeEEEEEcCCCCEEEEE-eCCCCccEEEEEE
Q 005235          448 GLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH-FKMVSSVEWHRRGDYLSTV-MPAGESRAIFMHQ  525 (707)
Q Consensus       448 ~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h-~~~V~~v~~sp~g~~lat~-s~dg~~~~V~Iwd  525 (707)
                      .++...                        ..+...+.......-| ...+.++.+++++..+++. ..++   .|.+||
T Consensus       256 ~t~~~~------------------------~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g---~i~vvd  308 (543)
T 1nir_A          256 ETLEPK------------------------QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG---KVLLVN  308 (543)
T ss_dssp             TTCCEE------------------------EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT---EEEEEE
T ss_pred             cccccc------------------------eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC---eEEEEE
Confidence            765321                        1111100000000012 3378999999988766544 4444   999999


Q ss_pred             CCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeC----CCCCeEEEEEcCC-CCEEEE
Q 005235          526 LSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLET----GLKEVSSIAIHPA-GDNLIV  597 (707)
Q Consensus       526 l~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~----~~~~I~sl~~spd-g~~L~s  597 (707)
                      +.+..... ..+.+...+.+++|+|++++|++++  +++|.+||+.+++++..+..    |.+....+ ++|+ |..+++
T Consensus       309 ~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s  387 (543)
T 1nir_A          309 YKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWST  387 (543)
T ss_dssp             CTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred             ecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEe
Confidence            98865541 1336667788999999999888775  79999999999999998875    43333333 5787 566666


Q ss_pred             EE-CCCcEEEEECCCC------CcceEEeecCCCCEEEEEEcCCCCEEEEEe-------CCCcEEEEecccccCCCCCCc
Q 005235          598 GS-REGKLCWFDMDLS------SKPYRVLKCHPKDITNVAFHRSYPLFASCS-------DDCTAYVFHGMVYSDLNQNPL  663 (707)
Q Consensus       598 Gs-~Dg~I~vwDl~~~------~~~~~~l~~h~~~I~~vafspdg~llaSgs-------~Dg~I~Vwd~~~~~Dl~~~~~  663 (707)
                      ++ .|++|.+||+++.      .++++++..|...+..|+|||++++|++++       .+++|.|||+...      ..
T Consensus       388 ~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~------~~  461 (543)
T 1nir_A          388 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL------DA  461 (543)
T ss_dssp             EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT------TS
T ss_pred             ccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC------CC
Confidence            65 5799999999871      378899999998899999999999999987       2789999966532      22


Q ss_pred             ccceEEe--------eCCCCCCCCCeeEEEEcCCCCEEEEEe-----CCCcEEEEeC
Q 005235          664 IVPLEIL--------RGHTSSNGRGVMDCKFHPRQPWLFTAG-----ADSVIRLYCH  707 (707)
Q Consensus       664 ~~pl~~l--------~gh~~~~~~gV~~l~fspdg~~L~s~g-----~Dg~IrlWdl  707 (707)
                      .  ...+        ..+...    |..++|+|+|++|+++.     .|+.|.|||.
T Consensus       462 ~--~~~~~v~~~~~~~~~~~~----~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          462 K--YQVLPIAEWADLGEGAKR----VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             C--CEEECHHHHHCCCSSCCE----EEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             C--eEEeechhhcccCCCCCc----eEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence            1  1222        333333    99999999999987652     4799999984

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=8.7e-23  Score=209.77  Aligned_cols=258  Identities=12%  Similarity=0.065  Sum_probs=195.0

Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCC-CCchhcccccceeeeccccccc
Q 005235          393 KGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL-GNEEEQRRVKDLLHVETPTAPD  471 (707)
Q Consensus       393 sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~-~~~~~~~~~~~v~~~~~~~~~~  471 (707)
                      +++.|++|++||+.+++......+...|.+++|+|++  .+++.+.++.|.+|++.+ +....                 
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg--~~l~~~~~~~i~~~d~~~~~~~~~-----------------   77 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDG--KYLLLNSEGLLYRLSLAGDPSPEK-----------------   77 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTS--SEEEEEETTEEEEEESSSCCSCEE-----------------
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCC--CEEEEEcCCeEEEEeCCCCCCceE-----------------
Confidence            3468899999999999988777778999999999999  455566789999999876 42210                 


Q ss_pred             CCCCcEEEEecCCccceEEecc-CCCeEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeeeccCCCeEEEEEeC
Q 005235          472 DNMASIVSWLQHDKLDGIRLRH-FKMVSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP  549 (707)
Q Consensus       472 ~~d~~i~iW~~~~~~~~~~~~h-~~~V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp  549 (707)
                                       ....+ ...+.+++|+|+|++|++++.+. ....|.++++.++..  ..+.....+.+++|+|
T Consensus        78 -----------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~sp  138 (297)
T 2ojh_A           78 -----------------VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP--RLMTKNLPSYWHGWSP  138 (297)
T ss_dssp             -----------------CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC--EECCSSSSEEEEEECT
T ss_pred             -----------------eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce--EEeecCCCccceEECC
Confidence                             11122 46788999999999999999432 133666666665553  4453344589999999


Q ss_pred             CCCEEE-EEe-CCeEEEEEC--CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEeecCCC
Q 005235          550 TRSIFF-VST-KKNIRVYDL--LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVLKCHPK  624 (707)
Q Consensus       550 d~~~l~-v~s-dg~I~iwDl--~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~  624 (707)
                      +++.|+ ++. ++.++||++  .++. ...+..+...+.+++|+|+|.+|++++ .++.+.+|+++........+..|..
T Consensus       139 dg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  217 (297)
T 2ojh_A          139 DGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY  217 (297)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred             CCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc
Confidence            999887 454 898899985  3444 455666778899999999999888776 5899999998754466788888888


Q ss_pred             CEEEEEEcCCCCEEEEEeCC-----------CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE
Q 005235          625 DITNVAFHRSYPLFASCSDD-----------CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL  693 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~D-----------g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L  693 (707)
                      .+.+++|+|++++|++++.+           +.|.+|+.      .+... ..+..+.+|...    +.+++|+|++++|
T Consensus       218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~------~~~~~-~~~~~~~~~~~~----~~~~~~spdg~~l  286 (297)
T 2ojh_A          218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM------DGGNV-ETLFDLFGGQGT----MNSPNWSPDGDEF  286 (297)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET------TSCSC-EEEEEEEESTTT----SCSCCBCTTSSEE
T ss_pred             ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec------CCCCc-eeeeccCCCCcc----cccceECCCCCEE
Confidence            89999999999999888766           46999954      33332 234555577766    9999999999999


Q ss_pred             EEEeCCC
Q 005235          694 FTAGADS  700 (707)
Q Consensus       694 ~s~g~Dg  700 (707)
                      ++++.+.
T Consensus       287 ~~~~~~~  293 (297)
T 2ojh_A          287 AYVRYFP  293 (297)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            8887654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=2.4e-22  Score=229.19  Aligned_cols=275  Identities=9%  Similarity=0.093  Sum_probs=211.9

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEEC--CCCCchhcccccce
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT--GLGNEEEQRRVKDL  461 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~--~~~~~~~~~~~~~v  461 (707)
                      |...+.++++++.|++|.+||..+++++.++.....+.+++|+|+| ..+++++.++.|.+||+  .++..         
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~---------  214 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTK---------  214 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEE---------
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCC-CEEEEECCCCeEEEEECcCCCCcE---------
Confidence            4445678899999999999999999999999865559999999999 47888889999999998  43311         


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcC----CCCEEEEEeC-CCCccEEEEEECCCCceeeeee
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHR----RGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPF  536 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp----~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~~~~  536 (707)
                                                ...+.+...+..++|+|    +|++|++++. ++   +|.|||..+.+.. ..+
T Consensus       215 --------------------------~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~---~v~v~D~~t~~~~-~~i  264 (543)
T 1nir_A          215 --------------------------VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP---QFAIMDGETLEPK-QIV  264 (543)
T ss_dssp             --------------------------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESS---EEEEEETTTCCEE-EEE
T ss_pred             --------------------------EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCC---eEEEEeccccccc-eee
Confidence                                      01223456689999999    9999999885 55   9999999988776 555


Q ss_pred             -c----------c-CCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEE--EEeCCCCCeEEEEEcCCCCEEEEEE-
Q 005235          537 -K----------L-HGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIK--KLETGLKEVSSIAIHPAGDNLIVGS-  599 (707)
Q Consensus       537 -~----------~-~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~--~l~~~~~~I~sl~~spdg~~L~sGs-  599 (707)
                       .          | ...+.++.|+|+++.++++.  ++.|.+||+.+.+.+.  .+. +...+.+++|+|+|++|++++ 
T Consensus       265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~  343 (543)
T 1nir_A          265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAAN  343 (543)
T ss_dssp             ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEG
T ss_pred             cccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEec
Confidence             2          1 23788999999988877765  7999999998764333  444 456788999999999877655 


Q ss_pred             CCCcEEEEECCCCCcceEEeec----CCCCEEEEEEcCC-CCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCC
Q 005235          600 REGKLCWFDMDLSSKPYRVLKC----HPKDITNVAFHRS-YPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGH  673 (707)
Q Consensus       600 ~Dg~I~vwDl~~~~~~~~~l~~----h~~~I~~vafspd-g~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh  673 (707)
                      .+++|.+||+.++ ++..++..    |.+....+ ++|+ ++++++++ .|++|.||+......  ......+++++.+|
T Consensus       344 ~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~--~~~~~~~v~~l~~~  419 (543)
T 1nir_A          344 NSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH--PQYAWKKVAELQGQ  419 (543)
T ss_dssp             GGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECS
T ss_pred             CCCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC--chhcCeEEEEEEcC
Confidence            5889999999987 77777764    65444333 5777 77788876 689999996642100  01113468999998


Q ss_pred             CCCCCCCeeEEEEcCCCCEEEEEe-------CCCcEEEEeC
Q 005235          674 TSSNGRGVMDCKFHPRQPWLFTAG-------ADSVIRLYCH  707 (707)
Q Consensus       674 ~~~~~~gV~~l~fspdg~~L~s~g-------~Dg~IrlWdl  707 (707)
                      ...    +..++|||++++|++++       .+++|.|||+
T Consensus       420 g~~----~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          420 GGG----SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  456 (543)
T ss_dssp             CSC----CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred             CCC----ceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence            765    89999999999999987       2789999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.91  E-value=7e-23  Score=216.26  Aligned_cols=212  Identities=8%  Similarity=-0.030  Sum_probs=161.2

Q ss_pred             CcEEEEEEccC----CCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC-c-cceEEe
Q 005235          418 EAIQYVAWNPL----PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD-K-LDGIRL  491 (707)
Q Consensus       418 ~~V~~v~~spd----g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~-~-~~~~~~  491 (707)
                      ..|.+|+|+|+    + ..+++++  ..+.+|++.++....         .    ...+.++.|++|++.. + ......
T Consensus       112 ~~v~sla~spd~~~~~-~~l~s~g--~~~~v~~l~~g~lv~---------s----s~~g~d~~V~~~~~s~dG~~~~s~~  175 (356)
T 2w18_A          112 REIRALFCSSDDESEK-QVLLKSG--NIKAVLGLTKRRLVS---------S----SGTLSDQQVEVMTFAEDGGGKENQF  175 (356)
T ss_dssp             EEEEEECC------CC-EEEEEEE--EEEEEEEETTTEEEE---------E----ESSSTTCEEEEEEECTTSCEEEEEE
T ss_pred             cceEEEEECCCccccc-cEEEeCC--CeEEEEecCCCcEEE---------e----cccCCCCcEEEEEECCCCceeeeec
Confidence            46899999999    7 2444444  458889876542211         0    0123589999999943 3 334477


Q ss_pred             ccCCCeEEEEEcC---CCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc---CCCeEEEEEeCCCCEEE---------
Q 005235          492 RHFKMVSSVEWHR---RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL---HGLPVSSVFHPTRSIFF---------  555 (707)
Q Consensus       492 ~h~~~V~~v~~sp---~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~---~~~V~~v~fspd~~~l~---------  555 (707)
                      .|...+..++|++   ++.+||+++.|+   +|+|||+.+++.. ..| .+   ...+.+++|+|++.+++         
T Consensus       176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~---TIkIWDl~TGk~l-~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w  251 (356)
T 2w18_A          176 LMPPEETILTFAEVQGMQEALLGTTIMN---NIVIWNLKTGQLL-KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE  251 (356)
T ss_dssp             ECCCSSCEEEEEEEETSTTEEEEEETTS---EEEEEETTTCCEE-EEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred             cCCCceeeEEeeccCCCCceEEEecCCC---cEEEEECCCCcEE-EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence            8999999999999   779999999998   9999999999988 777 43   34677889999998874         


Q ss_pred             ---EEe-CCeEEEEECCCCeEEEEEe-----CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCE
Q 005235          556 ---VST-KKNIRVYDLLKQRLIKKLE-----TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI  626 (707)
Q Consensus       556 ---v~s-dg~I~iwDl~~~~~~~~l~-----~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I  626 (707)
                         +|+ |++|++||..+++.+..+.     +|...+.+.+++  +.++++|+.|++|+|||+.++ +++.+|.+|...+
T Consensus       252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~v  328 (356)
T 2w18_A          252 SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQH  328 (356)
T ss_dssp             ------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC-SEEEEECCC--CC
T ss_pred             eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCe
Confidence               355 7999999999999887762     555555444444  889999999999999999987 7899999998765


Q ss_pred             E-EEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          627 T-NVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       627 ~-~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      . +++|||+|++||||+.|++|+|||+
T Consensus       329 vs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          329 WSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEecC
Confidence            5 6899999999999999999999963

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=3.1e-22  Score=210.67  Aligned_cols=267  Identities=9%  Similarity=-0.001  Sum_probs=199.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCC---cEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGE---AIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~---~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      .++++++.+++|++||+.+++.+..+....   .+.+++|+|++. .+++++ .++.|.+||+.++...           
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~v~~~~~~~v~~~d~~~~~~~-----------   69 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKIDLVTGETL-----------   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS-EEEEEETTTTEEEEEETTTCCEE-----------
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCC-EEEEEeCCCCeEEEEECCCCCeE-----------
Confidence            478999999999999999999999888755   689999999994 444444 4678999998765321           


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe------------CCCCccEEEEEECCCCcee
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM------------PAGESRAIFMHQLSKKLSH  532 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s------------~dg~~~~V~Iwdl~~~~~~  532 (707)
                                   ..+.....     ..|...+.+++|+|+|++|++++            .++   .|.+||+.++...
T Consensus        70 -------------~~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~---~i~v~d~~~~~~~  128 (337)
T 1pby_B           70 -------------GRIDLSTP-----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT---RVALYDAETLSRR  128 (337)
T ss_dssp             -------------EEEECCBT-----TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC---EEEEEETTTTEEE
T ss_pred             -------------eeEEcCCc-----ccccccccceEECCCCCEEEEEecccccccccccccCc---eEEEEECCCCcEE
Confidence                         11100000     00123577899999999998886            344   9999999888765


Q ss_pred             eeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC----------
Q 005235          533 RIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG----------  602 (707)
Q Consensus       533 ~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg----------  602 (707)
                       ..+.....+.+++|+|++++|+++ ++.|.+||+.+++.+..+..+. ....+.|+|+|..|++++..+          
T Consensus       129 -~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  205 (337)
T 1pby_B          129 -KAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTA  205 (337)
T ss_dssp             -EEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEE
T ss_pred             -EEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeecc
Confidence             556445678899999999988888 7899999999999888777553 112347899998776554332          


Q ss_pred             --------------cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceE
Q 005235          603 --------------KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLE  668 (707)
Q Consensus       603 --------------~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~  668 (707)
                                    .|.+||+.++......+..+...+.+++|+|++++|+++  ++.|.+||.      .+...   +.
T Consensus       206 ~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~------~~~~~---~~  274 (337)
T 1pby_B          206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL------EKNAS---IK  274 (337)
T ss_dssp             BTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET------TTTEE---EE
T ss_pred             ccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC------CCCcC---cc
Confidence                          468999987743334455667788999999999998888  799999954      33332   44


Q ss_pred             EeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          669 ILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       669 ~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .+..+..     +.+++|+|++++|++++.++.|.+||+
T Consensus       275 ~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          275 RVPLPHS-----YYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEECSSC-----CCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             eecCCCc-----eeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            4443322     889999999999999999999999985

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=1.4e-21  Score=206.37  Aligned_cols=275  Identities=9%  Similarity=0.082  Sum_probs=193.9

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeee
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      ...++++++.+++|++||+.+++.+..+.. ...+ +++|+|++. .+++++. ++.|.+||+.++...           
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~-~l~~~~~~~~~i~~~d~~~~~~~-----------   75 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCS-NVVVTSDFCQTLVQIETQLEPPK-----------   75 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSC-EEEEEESTTCEEEEEECSSSSCE-----------
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCC-EEEEEeCCCCeEEEEECCCCcee-----------
Confidence            344677888999999999999999888877 4556 999999994 4666665 778999987665210           


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEE
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVS  544 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~  544 (707)
                                            ......+.....+++|+|+|++|+++..++....|.+||+.++... ..+.....+.+
T Consensus        76 ----------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~  132 (331)
T 3u4y_A           76 ----------------------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI-STIPIPYDAVG  132 (331)
T ss_dssp             ----------------------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE-EEEECCTTEEE
T ss_pred             ----------------------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE-EEEECCCCccc
Confidence                                  0112234444555999999999994444322338999999988776 66655667799


Q ss_pred             EEEeCCCCEEEEEe--CCe-EEEEECCCCeEE----EEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcc-
Q 005235          545 SVFHPTRSIFFVST--KKN-IRVYDLLKQRLI----KKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKP-  615 (707)
Q Consensus       545 v~fspd~~~l~v~s--dg~-I~iwDl~~~~~~----~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~-  615 (707)
                      ++|+|++++|+++.  ++. |.+|++.....+    .........+.+++|+|+|++|++++ .++.|.+||+.++ +. 
T Consensus       133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~  211 (331)
T 3u4y_A          133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP-ENI  211 (331)
T ss_dssp             EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST-TSC
T ss_pred             eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-ccc
Confidence            99999998776664  477 999998764322    12223345689999999999765554 6889999999876 55 


Q ss_pred             --eEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccCCCCCCcccceEEeeCC----CCCCCCCeeEEEEcC
Q 005235          616 --YRVLKCHPKDITNVAFHRSYPLFASC-SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH----TSSNGRGVMDCKFHP  688 (707)
Q Consensus       616 --~~~l~~h~~~I~~vafspdg~llaSg-s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh----~~~~~~gV~~l~fsp  688 (707)
                        +..+..+ ..+.+++|+|+|++|+.+ ..++.|.+|+..      ++.. ..+..+..+    ... ..++..++|+|
T Consensus       212 ~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~------~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~sp  282 (331)
T 3u4y_A          212 TLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQL------SGTL-SFVKSFGHGLLIDPRP-LFGANQMALNK  282 (331)
T ss_dssp             EEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETT------TTEE-EEEEEEECCCCCCCGG-GTTCCCEEECT
T ss_pred             ceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECC------CCce-eeecccccccccCCCC-cccccceEECC
Confidence              6666644 567899999999966554 467889999543      3322 112232222    111 11245689999


Q ss_pred             CCCEEEEEeC-CCcEEEEeC
Q 005235          689 RQPWLFTAGA-DSVIRLYCH  707 (707)
Q Consensus       689 dg~~L~s~g~-Dg~IrlWdl  707 (707)
                      ++++|++++. ++.|.+|++
T Consensus       283 dg~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          283 TETKLFISANISRELKVFTI  302 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEET
T ss_pred             CCCEEEEecCCCCcEEEEEe
Confidence            9999866654 669999986

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=1.2e-21  Score=206.63  Aligned_cols=269  Identities=11%  Similarity=0.113  Sum_probs=189.4

Q ss_pred             EEEEEeCCCcEEEEeCC-CC--eEEEEEecCCcEEEEEEccCCCccEEEEEeC-CeEEEEECC--CCCchhcccccceee
Q 005235          390 LEYKGSTDGTVRIWEVE-SG--RCLRVLEIGEAIQYVAWNPLPELPVLAVSVG-QDVLILNTG--LGNEEEQRRVKDLLH  463 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~-tg--~~l~~l~~~~~V~~v~~spdg~~~lla~s~d-~~V~lwd~~--~~~~~~~~~~~~v~~  463 (707)
                      ++++++.|+.|++|++. ++  +.+..+.....+.+++|+|++. .+++++.+ +.|.+|++.  ++..           
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~~~~-----------   74 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGAL-----------   74 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCE-----------
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCCCce-----------
Confidence            45555889999999985 44  4555666678899999999994 56777665 899999976  2211           


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC-CCCccEEEEEECCCCc---eeeeeeccC
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKL---SHRIPFKLH  539 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~---~~~~~~~~~  539 (707)
                                    ..       . ........+.+++|+|+|++|++++. ++   .|.+|++..+.   .. ..+...
T Consensus        75 --------------~~-------~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---~i~~~d~~~~~~~~~~-~~~~~~  128 (343)
T 1ri6_A           75 --------------TF-------A-AESALPGSLTHISTDHQGQFVFVGSYNAG---NVSVTRLEDGLPVGVV-DVVEGL  128 (343)
T ss_dssp             --------------EE-------E-EEEECSSCCSEEEECTTSSEEEEEETTTT---EEEEEEEETTEEEEEE-EEECCC
T ss_pred             --------------ee-------c-cccccCCCCcEEEEcCCCCEEEEEecCCC---eEEEEECCCCcccccc-ccccCC
Confidence                          00       0 11122337899999999998887775 45   89999995322   22 333455


Q ss_pred             CCeEEEEEeCCCCEEEEEe--CCeEEEEECCC-CeEEE----EEeC-CCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECC
Q 005235          540 GLPVSSVFHPTRSIFFVST--KKNIRVYDLLK-QRLIK----KLET-GLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMD  610 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~-~~~~~----~l~~-~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~  610 (707)
                      ..+.+++|+|++.+|++++  ++.|++||+.+ ++...    .+.. ....+.+++|+|+|++|++++ .++.|.+||++
T Consensus       129 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          129 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            6789999999999888875  79999999987 65432    2332 334688999999999776655 78999999996


Q ss_pred             CCC-cc--eEEee----cC--CCCEEEEEEcCCCCEEE-EEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235          611 LSS-KP--YRVLK----CH--PKDITNVAFHRSYPLFA-SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG  680 (707)
Q Consensus       611 ~~~-~~--~~~l~----~h--~~~I~~vafspdg~lla-Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g  680 (707)
                      ... ..  ...+.    ++  ...+.+++|+|++++|+ +++.++.|.+|++..    ... ....+..+..+..     
T Consensus       209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~----~~~-~~~~~~~~~~~~~-----  278 (343)
T 1ri6_A          209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE----DGS-VLSKEGFQPTETQ-----  278 (343)
T ss_dssp             CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT----TSC-CEEEEEEEECSSS-----
T ss_pred             CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC----CCC-ceEEeeeecCCCc-----
Confidence            421 21  22222    11  23577899999998666 555899999996531    011 1223445554432     


Q ss_pred             eeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235          681 VMDCKFHPRQPWLFTAG-ADSVIRLYC  706 (707)
Q Consensus       681 V~~l~fspdg~~L~s~g-~Dg~IrlWd  706 (707)
                      +.+++|+|++++|++++ .++.|.+|+
T Consensus       279 ~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          279 PRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             cceEEECCCCCEEEEecCCCCeEEEEE
Confidence            78899999999998887 689999995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=1.9e-21  Score=214.14  Aligned_cols=237  Identities=10%  Similarity=0.067  Sum_probs=183.9

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC---eEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235          398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ---DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM  474 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~---~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d  474 (707)
                      ++|++||+..+.......+...|.+++|+|+|. .|++++.++   .|++||+.++.                       
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~-----------------------  214 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGA-----------------------  214 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCC-----------------------
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCc-----------------------
Confidence            799999997554433334488999999999994 677777664   78888876542                       


Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEE-EEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCC
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLS-TVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRS  552 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~la-t~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~  552 (707)
                                  ...+..|...+.+++|+|+|++|+ +++.++ ...|.+||+.++..  ..+ .+.+.+.+++|+|+++
T Consensus       215 ------------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g-~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdg~  279 (415)
T 2hqs_A          215 ------------VRQVASFPRHNGAPAFSPDGSKLAFALSKTG-SLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQ  279 (415)
T ss_dssp             ------------EEEEECCSSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSS
T ss_pred             ------------EEEeecCCCcccCEEEcCCCCEEEEEEecCC-CceEEEEECCCCCE--EeCcCCCCcccceEECCCCC
Confidence                        123446778899999999999988 455444 45799999998776  345 7788999999999999


Q ss_pred             EEEEEe--CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeecCCCC
Q 005235          553 IFFVST--KK--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       553 ~l~v~s--dg--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      +|++++  ++  .|.+||+.+++. ..+..+...+.+++|+|+|++|++++.+   ..|.+||+.++ .. ..+..|. .
T Consensus       280 ~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~-~~-~~l~~~~-~  355 (415)
T 2hqs_A          280 NLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-GV-QVLSSTF-L  355 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC-CE-EECCCSS-S
T ss_pred             EEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC-CE-EEecCCC-C
Confidence            888877  33  788889988764 3455566789999999999999988865   57999999876 33 4566664 8


Q ss_pred             EEEEEEcCCCCEEEEEeCCC---cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235          626 ITNVAFHRSYPLFASCSDDC---TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP  691 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg---~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~  691 (707)
                      +.+++|+|+|++|++++.++   .|++|++      ...    .+..+.+|...    |.+++|+|...
T Consensus       356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~------~g~----~~~~l~~~~~~----v~~~~~~~~~~  410 (415)
T 2hqs_A          356 DETPSLAPNGTMVIYSSSQGMGSVLNLVST------DGR----FKARLPATDGQ----VKFPAWSPYLH  410 (415)
T ss_dssp             CEEEEECTTSSEEEEEEEETTEEEEEEEET------TSC----CEEECCCSSSE----EEEEEECCCCC
T ss_pred             cCCeEEcCCCCEEEEEEcCCCccEEEEEEC------CCC----cEEEeeCCCCC----CcCCccccccc
Confidence            99999999999999888776   7899954      222    26788888877    99999999643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=3.8e-21  Score=226.53  Aligned_cols=302  Identities=9%  Similarity=0.002  Sum_probs=218.2

Q ss_pred             CCCcEEEEEeC-CC-----cEEEEeCCCCeEEEEEecC-------------------------CcEEEEEEccCCCccEE
Q 005235          386 VACYLEYKGST-DG-----TVRIWEVESGRCLRVLEIG-------------------------EAIQYVAWNPLPELPVL  434 (707)
Q Consensus       386 ~~~~~l~sgs~-Dg-----tVrIWd~~tg~~l~~l~~~-------------------------~~V~~v~~spdg~~~ll  434 (707)
                      .++..+++++. |+     +|++||+.+|+....+...                         ..|.+++|||||  ..+
T Consensus        46 pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg--~~l  123 (741)
T 2ecf_A           46 PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA--QRL  123 (741)
T ss_dssp             TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS--SEE
T ss_pred             cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC--CEE
Confidence            34457888887 88     9999999999987777651                         237899999999  355


Q ss_pred             EEEeCCeEEEEECCCC---Cc-hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEEe-ccCCC--------
Q 005235          435 AVSVGQDVLILNTGLG---NE-EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRL-RHFKM--------  496 (707)
Q Consensus       435 a~s~d~~V~lwd~~~~---~~-~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~--------  496 (707)
                      +.+.++.|.+|++.++   .. .+..+...+..+.|+     ++.++ ++.|.+|+..++....+. .+...        
T Consensus       124 ~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~  202 (741)
T 2ecf_A          124 LFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEF  202 (741)
T ss_dssp             EEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCH
T ss_pred             EEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccce
Confidence            5555699999999887   33 334444556666665     33333 568999999876554332 22221        


Q ss_pred             --------eEEEEEcCCCCEEEEEeCCCC------------------------------ccEEEEEECCC-Cceeeeee-
Q 005235          497 --------VSSVEWHRRGDYLSTVMPAGE------------------------------SRAIFMHQLSK-KLSHRIPF-  536 (707)
Q Consensus       497 --------V~~v~~sp~g~~lat~s~dg~------------------------------~~~V~Iwdl~~-~~~~~~~~-  536 (707)
                              +.+++|||+|++|++++.++.                              ...|.+||+.+ +... ... 
T Consensus       203 v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-~~~~  281 (741)
T 2ecf_A          203 VADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ-WIDL  281 (741)
T ss_dssp             HHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE-EECC
T ss_pred             eeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceE-EecC
Confidence                    478999999999999876541                              12788899988 7654 322 


Q ss_pred             --ccCCCeEEEEEeCCCCEEEEEe------CCeEEEEECCCCeEEEEEeCCCC----CeEEEEEcCCCCEEEEEECCCcE
Q 005235          537 --KLHGLPVSSVFHPTRSIFFVST------KKNIRVYDLLKQRLIKKLETGLK----EVSSIAIHPAGDNLIVGSREGKL  604 (707)
Q Consensus       537 --~~~~~V~~v~fspd~~~l~v~s------dg~I~iwDl~~~~~~~~l~~~~~----~I~sl~~spdg~~L~sGs~Dg~I  604 (707)
                        .+...+.+++| |+|++|+++.      +..|++||+.++++...+..+..    .+.+++|+|+|+++++++.+|.+
T Consensus       282 ~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~  360 (741)
T 2ecf_A          282 GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQ  360 (741)
T ss_dssp             CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSC
T ss_pred             CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCcc
Confidence              35678899999 9999988754      36799999999987776665432    34689999999999999999988


Q ss_pred             EEEECCCCCcceEEeecCCCCEEEE-EEcCCCCEEE-EEeCCC--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235          605 CWFDMDLSSKPYRVLKCHPKDITNV-AFHRSYPLFA-SCSDDC--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG  680 (707)
Q Consensus       605 ~vwDl~~~~~~~~~l~~h~~~I~~v-afspdg~lla-Sgs~Dg--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g  680 (707)
                      .||.++.... ...+..|...|.++ +|+|+++.|+ +++.++  .++||++...     +.   .+..+.+ ..    +
T Consensus       361 ~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~-----g~---~~~~l~~-~~----~  426 (741)
T 2ecf_A          361 HLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ-----GG---QPQRLSK-AP----G  426 (741)
T ss_dssp             EEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT-----CC---CCEECCC-SC----S
T ss_pred             EEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC-----CC---Ceeeccc-CC----C
Confidence            8887764435 77888888889887 5999998665 555565  8999976321     11   1345554 22    3


Q ss_pred             eeEEEEcCCCCEEEEEeCC----CcEEEEe
Q 005235          681 VMDCKFHPRQPWLFTAGAD----SVIRLYC  706 (707)
Q Consensus       681 V~~l~fspdg~~L~s~g~D----g~IrlWd  706 (707)
                      +.+++|+|+|++|+....+    +.+.+|+
T Consensus       427 ~~~~~~spdg~~l~~~~~~~~~p~~~~l~~  456 (741)
T 2ecf_A          427 MHSASFARNASVYVDSWSNNSTPPQIELFR  456 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence            8999999999988766443    3566665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=9.6e-21  Score=221.97  Aligned_cols=300  Identities=10%  Similarity=0.042  Sum_probs=204.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeE--EEEEecC-----------------CcEEEEEEccCCCccEEEEEeCCeEEEEECC
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRC--LRVLEIG-----------------EAIQYVAWNPLPELPVLAVSVGQDVLILNTG  448 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~--l~~l~~~-----------------~~V~~v~~spdg~~~lla~s~d~~V~lwd~~  448 (707)
                      +..+++++.|+ | +||+.+|+.  ...+...                 ..|.+++|+|++  .++ .+.++.|.+||+.
T Consensus        35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~--~~~-~~~~~~i~~~d~~  109 (706)
T 2z3z_A           35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRG--LVV-LFTQGGLVGFDML  109 (706)
T ss_dssp             TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTT--EEE-EEETTEEEEEETT
T ss_pred             CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCC--eEE-EEECCEEEEEECC
Confidence            34566667788 8 999999987  3333332                 569999999995  344 4467999999998


Q ss_pred             CCCch-hcccccceeeeccc-----ccccCCCCcEEEEecCC-----ccceEEe-ccCCC--------------eEEEEE
Q 005235          449 LGNEE-EQRRVKDLLHVETP-----TAPDDNMASIVSWLQHD-----KLDGIRL-RHFKM--------------VSSVEW  502 (707)
Q Consensus       449 ~~~~~-~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~-----~~~~~~~-~h~~~--------------V~~v~~  502 (707)
                      ++... +......+..+.|+     ++. ..++.|.+|++.+     +....+. .+...              +.+++|
T Consensus       110 ~~~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~  188 (706)
T 2z3z_A          110 ARKVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFW  188 (706)
T ss_dssp             TTEEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEE
T ss_pred             CCceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEE
Confidence            77542 22233344445554     333 3678999999987     5543322 22222              589999


Q ss_pred             cCCCCEEEEEeCC------------------------------CCccEEEEEECCCCceeeeee---ccCCCeEEEEEeC
Q 005235          503 HRRGDYLSTVMPA------------------------------GESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHP  549 (707)
Q Consensus       503 sp~g~~lat~s~d------------------------------g~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fsp  549 (707)
                      +|+|++|++++.|                              .....|.+||+.++... ...   .+...+.+++|+|
T Consensus       189 SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~sp  267 (706)
T 2z3z_A          189 SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV-YLQTGEPKEKFLTNLSWSP  267 (706)
T ss_dssp             CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE-ECCCCSCTTCEEEEEEECT
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE-eeccCCCCceeEeeEEEEC
Confidence            9999999998732                              12358999999988764 332   3556789999999


Q ss_pred             CCCEEEEEe-CC-----eEEEEECCCCeEEEEEe--CCCCC---eEEEEEcC--CCCEEEEEECCCcEEEEECCCCCcce
Q 005235          550 TRSIFFVST-KK-----NIRVYDLLKQRLIKKLE--TGLKE---VSSIAIHP--AGDNLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       550 d~~~l~v~s-dg-----~I~iwDl~~~~~~~~l~--~~~~~---I~sl~~sp--dg~~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                      +++.|++++ ++     .|++||+.+++....+.  .+..+   +.+++|+|  +|++|++++.++.+.||+++......
T Consensus       268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~  347 (706)
T 2z3z_A          268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI  347 (706)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE
T ss_pred             CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE
Confidence            999888866 54     89999999983333332  22222   46789999  99999999999999999887444667


Q ss_pred             EEeecCCCCEEE-EEEcCCCCEEEEEe-CCC--cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235          617 RVLKCHPKDITN-VAFHRSYPLFASCS-DDC--TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW  692 (707)
Q Consensus       617 ~~l~~h~~~I~~-vafspdg~llaSgs-~Dg--~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~  692 (707)
                      ..+..|...+.+ ++|+|+++.|+.++ .++  .+.||.+    ++.+..    +..+. |...    +.+++|+|+|++
T Consensus       348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~----d~~~~~----~~~l~-~~~~----~~~~~~spdg~~  414 (706)
T 2z3z_A          348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI----DIKGGK----TKDLT-PESG----MHRTQLSPDGSA  414 (706)
T ss_dssp             EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE----ETTCCC----CEESC-CSSS----EEEEEECTTSSE
T ss_pred             EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE----EcCCCC----ceecc-CCCc----eEEEEECCCCCE
Confidence            788888888887 79999999776554 444  3455533    232222    23333 4333    999999999998


Q ss_pred             EEEEeCC----CcEEEEeC
Q 005235          693 LFTAGAD----SVIRLYCH  707 (707)
Q Consensus       693 L~s~g~D----g~IrlWdl  707 (707)
                      |+.++.+    +.|.+|++
T Consensus       415 l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          415 IIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EEEEEECSSCSCEEEEEES
T ss_pred             EEEEecCCCCCcEEEEEEC
Confidence            8776443    56999984

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=2.3e-21  Score=237.97  Aligned_cols=294  Identities=13%  Similarity=0.083  Sum_probs=215.6

Q ss_pred             cCCCCcEEEEEeC------------CCcEEEEeCCC-CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCC-
Q 005235          384 YPVACYLEYKGST------------DGTVRIWEVES-GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL-  449 (707)
Q Consensus       384 fp~~~~~l~sgs~------------DgtVrIWd~~t-g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~-  449 (707)
                      |+. + ++++++.            +...+||.... ++......+...+.+++|+++.  .++++..++.+.||.+.. 
T Consensus       159 ~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~--l~~~~~~dg~~~l~~~~~~  234 (1045)
T 1k32_A          159 FAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLD  234 (1045)
T ss_dssp             EET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETT
T ss_pred             eCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCE--EEEEEeccCceEEEEEeCC
Confidence            444 5 8888753            34566775433 4443333338899999999884  455566678888887653 


Q ss_pred             -CCc-hhcccccceeeeccc-----ccccCCCCcEEEEecCCccceEEec-----------cCCCeEEEEEc-CCCCEEE
Q 005235          450 -GNE-EEQRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRLR-----------HFKMVSSVEWH-RRGDYLS  510 (707)
Q Consensus       450 -~~~-~~~~~~~~v~~~~~~-----~~~~~~d~~i~iW~~~~~~~~~~~~-----------h~~~V~~v~~s-p~g~~la  510 (707)
                       +.. .+..+. .+....|+     ++.+ .++.+.+|+........+..           |...+.+++|+ |+|++|+
T Consensus       235 g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la  312 (1045)
T 1k32_A          235 GKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA  312 (1045)
T ss_dssp             SCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE
T ss_pred             CCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEE
Confidence             221 222221 22222332     3333 57889999885443332222           34479999999 9999999


Q ss_pred             EEeCCCCccEEEEEECCCCceeeeee-ccCC-CeEEEEEeCCCCEEEEEe-CCeEE-EEECCCCeEEEEEeCCCCCeEEE
Q 005235          511 TVMPAGESRAIFMHQLSKKLSHRIPF-KLHG-LPVSSVFHPTRSIFFVST-KKNIR-VYDLLKQRLIKKLETGLKEVSSI  586 (707)
Q Consensus       511 t~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~-~V~~v~fspd~~~l~v~s-dg~I~-iwDl~~~~~~~~l~~~~~~I~sl  586 (707)
                      +++ ++   .|.+|++..+...  .+ .+.+ .+.+++|+ ++..|++++ ++.|. +||+.+++.. .+..+...+.++
T Consensus       313 ~~~-~~---~i~~~~~~~~~~~--~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~  384 (1045)
T 1k32_A          313 FVS-RG---QAFIQDVSGTYVL--KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAM  384 (1045)
T ss_dssp             EEE-TT---EEEEECTTSSBEE--ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEE
T ss_pred             EEE-cC---EEEEEcCCCCceE--EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeee
Confidence            988 55   8999999877654  35 6666 89999999 999999888 67788 8999877654 444777889999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC----------cEEEEeccccc
Q 005235          587 AIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC----------TAYVFHGMVYS  656 (707)
Q Consensus       587 ~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg----------~I~Vwd~~~~~  656 (707)
                      +|+|+|++|++++.++.|++||+.++ .....+..|...+.+++|||+|++||+++.++          .|++|++    
T Consensus       385 ~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~----  459 (1045)
T 1k32_A          385 GVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM----  459 (1045)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET----
T ss_pred             EECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC----
Confidence            99999999999999999999999877 66666778999999999999999998887654          8999954    


Q ss_pred             CCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          657 DLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       657 Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                        .++.    +..+.+|...    +.+++|+|+|++|++++.++..++|+
T Consensus       460 --~~g~----~~~l~~~~~~----~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          460 --EGRK----IFAATTENSH----DYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             --TTTE----EEECSCSSSB----EEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             --CCCc----EEEeeCCCcc----cCCceEcCCCCEEEEEecccCCcCcc
Confidence              3332    4567777665    89999999999999999988887775

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=5e-20  Score=195.57  Aligned_cols=268  Identities=6%  Similarity=0.010  Sum_probs=194.2

Q ss_pred             CCcEEEEEeC-------CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccc
Q 005235          387 ACYLEYKGST-------DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRV  458 (707)
Q Consensus       387 ~~~~l~sgs~-------DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~  458 (707)
                      ++..+|+++.       ++.|.+||..+++.+..+.....+.+++|+|++. .+++++ .++.|.+||+.++...     
T Consensus        51 dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~v~~~~~~~v~~~d~~~~~~~-----  124 (353)
T 3vgz_A           51 QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQ-TLWFGNTVNSAVTAIDAKTGEVK-----  124 (353)
T ss_dssp             TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTT-EEEEEETTTTEEEEEETTTCCEE-----
T ss_pred             CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCC-EEEEEecCCCEEEEEeCCCCeeE-----
Confidence            3345666553       6789999999999999998877789999999994 355544 4689999998765321     


Q ss_pred             cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec-
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK-  537 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~-  537 (707)
                                         ..+....... ........+.+++|+|+|+++++++... .+.|.+||+.++... ..+. 
T Consensus       125 -------------------~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~~i~~~d~~~~~~~-~~~~~  182 (353)
T 3vgz_A          125 -------------------GRLVLDDRKR-TEEVRPLQPRELVADDATNTVYISGIGK-ESVIWVVDGGNIKLK-TAIQN  182 (353)
T ss_dssp             -------------------EEEESCCCCC-CSSCCCCEEEEEEEETTTTEEEEEEESS-SCEEEEEETTTTEEE-EEECC
T ss_pred             -------------------EEEecCCCcc-ccccCCCCCceEEECCCCCEEEEEecCC-CceEEEEcCCCCceE-EEecC
Confidence                               1111100000 0000111368899999999888776311 238999999988776 6664 


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC----CCCCeEEEEEcCCCCEEEEEECC-CcEEEEECCC
Q 005235          538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET----GLKEVSSIAIHPAGDNLIVGSRE-GKLCWFDMDL  611 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~----~~~~I~sl~~spdg~~L~sGs~D-g~I~vwDl~~  611 (707)
                      +...+.+++|+|++.+|++++ ++.|.+||+.+++.+..+..    +...+.+++|+|+|++|++++.+ +.|.+||+.+
T Consensus       183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            566688999999999999988 89999999999998888775    34458899999999988777654 8999999987


Q ss_pred             CCcceEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235          612 SSKPYRVLKCHPKDITNVAFHRSYPLF-ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ  690 (707)
Q Consensus       612 ~~~~~~~l~~h~~~I~~vafspdg~ll-aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg  690 (707)
                      + +.+..+..+..  .+++|+|+++.+ +++..++.|.+||.      .+...   +..+..+..     +.+++|+|+|
T Consensus       263 ~-~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~------~~~~~---~~~~~~~~~-----~~~~~~s~dg  325 (353)
T 3vgz_A          263 G-NILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDA------KSYKV---VKTFDTPTH-----PNSLALSADG  325 (353)
T ss_dssp             C-CEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEET------TTTEE---EEEEECCSE-----EEEEEECTTS
T ss_pred             C-cEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEEC------CCCeE---EEEEecCCC-----CCeEEEcCCC
Confidence            7 56666664432  579999999955 45557999999954      33333   444544432     8999999999


Q ss_pred             CEEEEEeCC
Q 005235          691 PWLFTAGAD  699 (707)
Q Consensus       691 ~~L~s~g~D  699 (707)
                      ++|+.++.+
T Consensus       326 ~~l~v~~~~  334 (353)
T 3vgz_A          326 KTLYVSVKQ  334 (353)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEEEcc
Confidence            987766654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=3.2e-20  Score=227.68  Aligned_cols=253  Identities=11%  Similarity=-0.019  Sum_probs=196.0

Q ss_pred             cEEEEEeCCCcEEEEeCCC-CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch-hcc----------
Q 005235          389 YLEYKGSTDGTVRIWEVES-GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE-EQR----------  456 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~t-g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~-~~~----------  456 (707)
                      .++++++.||+++||.+.. +.....+.....+.+++|+|+|.  .++.+.++.|.+|++...... +..          
T Consensus       215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~--~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~  292 (1045)
T 1k32_A          215 RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGR--RILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRI  292 (1045)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSS--CEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEE
T ss_pred             EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCC--EEEEEeCCEEEEecCCceEeeeeccCccccccccc
Confidence            4788888999999998753 44444555544577889999993  444557999999998433211 111          


Q ss_pred             -cccceeeeccc------ccccCCCCcEEEEecCCccceEEeccCC-CeEEEEEcCCCCEEEEEeCCCCccEEE-EEECC
Q 005235          457 -RVKDLLHVETP------TAPDDNMASIVSWLQHDKLDGIRLRHFK-MVSSVEWHRRGDYLSTVMPAGESRAIF-MHQLS  527 (707)
Q Consensus       457 -~~~~v~~~~~~------~~~~~~d~~i~iW~~~~~~~~~~~~h~~-~V~~v~~sp~g~~lat~s~dg~~~~V~-Iwdl~  527 (707)
                       +...+..+.|+      ++.++ ++.+.+|+..+.....+..|.. .+.+++|+ +|+.|++++.+.   .+. +|++.
T Consensus       293 ~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~---~l~~~~d~~  367 (1045)
T 1k32_A          293 ISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREG---DFLGIYDYR  367 (1045)
T ss_dssp             EECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTE---EEEEEEETT
T ss_pred             ccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCC---ceEEEEECC
Confidence             11123333332      33333 7789999988766555666777 89999999 999999999755   888 99998


Q ss_pred             CCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC---
Q 005235          528 KKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG---  602 (707)
Q Consensus       528 ~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---  602 (707)
                      ++...  .+ .+...+.+++|+|+|++|++++ ++.|++||+.+++....+..|...+.+++|+|+|++|++++.++   
T Consensus       368 ~~~~~--~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~  445 (1045)
T 1k32_A          368 TGKAE--KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE  445 (1045)
T ss_dssp             TCCEE--ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred             CCCce--EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence            77653  34 7778899999999999999888 79999999999988877778888899999999999999887754   


Q ss_pred             -------cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          603 -------KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       603 -------~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                             .|++||+.++ + ...+..|...+.+++|+|+|+.|++++.++...+|+.
T Consensus       446 ~~~~~~~~i~l~d~~~g-~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          446 TDGYVMQAIHVYDMEGR-K-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             TCSCCEEEEEEEETTTT-E-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             ccCCCCCeEEEEECCCC-c-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence                   8999999876 4 6778888889999999999999999999888888864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=5.1e-21  Score=224.60  Aligned_cols=271  Identities=11%  Similarity=0.051  Sum_probs=187.2

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCC----cEEEEEEccCCCccEEEEEeC---------CeEEEEECCCC
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGE----AIQYVAWNPLPELPVLAVSVG---------QDVLILNTGLG  450 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~----~V~~v~~spdg~~~lla~s~d---------~~V~lwd~~~~  450 (707)
                      |..++.++++ +.||+|++||+.+|++...+....    .|.+++|||||. .|++++.+         +.|.+||+.++
T Consensus        24 ~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i~~~d~~~~  101 (723)
T 1xfd_A           24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (723)
T ss_dssp             BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCC-EEEEEecCccceeecceeeEEEEECCCC
Confidence            3344456666 789999999999999887777633    499999999993 56666553         45555555443


Q ss_pred             CchhcccccceeeecccccccCCCCcEEEEecCCccceEE---eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC
Q 005235          451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR---LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS  527 (707)
Q Consensus       451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~---~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~  527 (707)
                                                         ....+   ..|...+.+++|||+|++||+++. +   .|.+|++.
T Consensus       102 -----------------------------------~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~---~i~~~~~~  142 (723)
T 1xfd_A          102 -----------------------------------DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-N---NIYYCAHV  142 (723)
T ss_dssp             -----------------------------------CCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-T---EEEEESSS
T ss_pred             -----------------------------------ceEeccCCccccccccccEECCCCCEEEEEEC-C---eEEEEECC
Confidence                                               22111   134455889999999999999986 4   89999999


Q ss_pred             CCceeeeee-ccCCC------------------eEEEEEeCCCCEEEEEe-CC---------------------------
Q 005235          528 KKLSHRIPF-KLHGL------------------PVSSVFHPTRSIFFVST-KK---------------------------  560 (707)
Q Consensus       528 ~~~~~~~~~-~~~~~------------------V~~v~fspd~~~l~v~s-dg---------------------------  560 (707)
                      ++... ... .+...                  +.+++|+|+|+.|++++ ++                           
T Consensus       143 ~g~~~-~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (723)
T 1xfd_A          143 GKQAI-RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA  221 (723)
T ss_dssp             SSCCE-EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred             CCceE-EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence            87765 333 33332                  37899999999998876 32                           


Q ss_pred             -------eEEEEECCCCeEEEEEeCC------CCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCCcceEEeec-C
Q 005235          561 -------NIRVYDLLKQRLIKKLETG------LKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLSSKPYRVLKC-H  622 (707)
Q Consensus       561 -------~I~iwDl~~~~~~~~l~~~------~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~~~~~~~l~~-h  622 (707)
                             .|++||+.+++....+..+      ...+.+++|+|||++|++.+..    ..|.+||+.++ ++...+.. +
T Consensus       222 G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~  300 (723)
T 1xfd_A          222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDES  300 (723)
T ss_dssp             TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEEC
T ss_pred             CCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEecc
Confidence                   7999999988765666654      4678999999999988777543    57999999877 45555443 3


Q ss_pred             CCCEE----EEEEcCCCCEEEE--EeCCC----c--EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE-EEEcCC
Q 005235          623 PKDIT----NVAFHRSYPLFAS--CSDDC----T--AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD-CKFHPR  689 (707)
Q Consensus       623 ~~~I~----~vafspdg~llaS--gs~Dg----~--I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~-l~fspd  689 (707)
                      ...+.    +++|||+|+.|+.  +..++    .  |.+|+.     ...... .+...+..+...    +.. ++|+|+
T Consensus       301 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~-----~~~~~~-~~~~~l~~~~~~----~~~~~~~spd  370 (723)
T 1xfd_A          301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS-----QPNSSN-DNIQSITSGDWD----VTKILAYDEK  370 (723)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS-----SCCSSS-CCCCBSCCSSSC----EEEEEEEETT
T ss_pred             CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec-----cCCCCc-cceeEeecCCeE----EEeeeEEcCC
Confidence            34443    7899999996664  45677    4  555531     112210 012233332222    554 699999


Q ss_pred             CCEEEEEeCC---CcEEEEeC
Q 005235          690 QPWLFTAGAD---SVIRLYCH  707 (707)
Q Consensus       690 g~~L~s~g~D---g~IrlWdl  707 (707)
                      |++|+.++.+   +.++||++
T Consensus       371 g~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          371 GNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             TTEEEEEESSSCTTCCEEEEE
T ss_pred             CCEEEEEEcCCCCcceEEEEE
Confidence            9999776655   78999973

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=5e-19  Score=188.56  Aligned_cols=270  Identities=10%  Similarity=0.092  Sum_probs=182.6

Q ss_pred             EEEEEe----CCCcEEEEeC--CCCeEEE--EEecCCcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcccc
Q 005235          390 LEYKGS----TDGTVRIWEV--ESGRCLR--VLEIGEAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQRRV  458 (707)
Q Consensus       390 ~l~sgs----~DgtVrIWd~--~tg~~l~--~l~~~~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~~~  458 (707)
                      .+|.|+    .++.|.+|.+  .+|+...  .......+..++|+|+| . +++++.   ++.|.+|++.++..      
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg-~-l~~~~~~~~~~~v~~~~~~~g~~------   75 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKD-C-LYSVDKEDDEGGIAAWQIDGQTA------   75 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTC-E-EEEEEEETTEEEEEEEEEETTEE------
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCC-e-EEEEEecCCCceEEEEEecCCcE------
Confidence            455553    3456777665  4676543  33336778899999999 3 776665   47889998744311      


Q ss_pred             cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCcee-e-ee
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSH-R-IP  535 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~-~-~~  535 (707)
                                         ..       ......+...+..++|+|+|++|++++ .++   .|.+|++...... . ..
T Consensus        76 -------------------~~-------~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~---~v~v~~~~~~g~~~~~~~  126 (347)
T 3hfq_A           76 -------------------HK-------LNTVVAPGTPPAYVAVDEARQLVYSANYHKG---TAEVMKIAADGALTLTDT  126 (347)
T ss_dssp             -------------------EE-------EEEEEEESCCCSEEEEETTTTEEEEEETTTT---EEEEEEECTTSCEEEEEE
T ss_pred             -------------------EE-------eeeeecCCCCCEEEEECCCCCEEEEEeCCCC---EEEEEEeCCCCCeeecce
Confidence                               00       011234677889999999999999888 445   9999999633222 0 22


Q ss_pred             ecc----------CCCeEEEEEeCCCCEEEEEe-CCeEEEEECC-CCeEE--EEEeCC-CCCeEEEEEcCCCCEEEE-EE
Q 005235          536 FKL----------HGLPVSSVFHPTRSIFFVST-KKNIRVYDLL-KQRLI--KKLETG-LKEVSSIAIHPAGDNLIV-GS  599 (707)
Q Consensus       536 ~~~----------~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~-~~~~~--~~l~~~-~~~I~sl~~spdg~~L~s-Gs  599 (707)
                      +..          ...+.+++|+|+++++++.. ++.|++|++. ++++.  ..+... ...+..++|+|+|++|++ +.
T Consensus       127 ~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  206 (347)
T 3hfq_A          127 VQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE  206 (347)
T ss_dssp             EECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             eecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC
Confidence            221          12488999999999444444 7899999998 55433  223332 236788999999997666 45


Q ss_pred             CCCcEEEEECCCCC-c--ceEEeecCC------CCEEEEEEcCCCCEE-EEEeCCCcEEEEecccccCCCCCCcccceEE
Q 005235          600 REGKLCWFDMDLSS-K--PYRVLKCHP------KDITNVAFHRSYPLF-ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI  669 (707)
Q Consensus       600 ~Dg~I~vwDl~~~~-~--~~~~l~~h~------~~I~~vafspdg~ll-aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~  669 (707)
                      .++.|.+|+++... .  ....+....      ..+..++|+|+|++| +++..++.|.+|++..      ......+..
T Consensus       207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~------~g~~~~~~~  280 (347)
T 3hfq_A          207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA------DGHLTLIQQ  280 (347)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG------GGCEEEEEE
T ss_pred             CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC------CCcEEEeEE
Confidence            67899999988521 2  122333332      348899999999966 5666789999996531      112234566


Q ss_pred             eeCCCCCCCCCeeEEEEcCCCCEEEEEeCC-CcEEEEe
Q 005235          670 LRGHTSSNGRGVMDCKFHPRQPWLFTAGAD-SVIRLYC  706 (707)
Q Consensus       670 l~gh~~~~~~gV~~l~fspdg~~L~s~g~D-g~IrlWd  706 (707)
                      +..+...    +.+++|+|+|++|++++.+ +.|.+|+
T Consensus       281 ~~~~~~~----~~~~~~spdg~~l~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          281 ISTEGDF----PRDFDLDPTEAFVVVVNQNTDNATLYA  314 (347)
T ss_dssp             EECSSSC----CCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCC----cCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence            6666554    8999999999999888765 8999994

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=4.4e-20  Score=217.44  Aligned_cols=269  Identities=9%  Similarity=0.019  Sum_probs=199.3

Q ss_pred             CCcEEEEEEccCCCccEEEEEe-CC-----eEEEEECCCCCch--hcccc------------------------cceeee
Q 005235          417 GEAIQYVAWNPLPELPVLAVSV-GQ-----DVLILNTGLGNEE--EQRRV------------------------KDLLHV  464 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~-d~-----~V~lwd~~~~~~~--~~~~~------------------------~~v~~~  464 (707)
                      ...|.+++|+|||. .|++++. ++     .|.+|++.++...  ...+.                        ..+..+
T Consensus        36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            45689999999994 6777776 77     8999999887542  11111                        124455


Q ss_pred             ccc-----ccccCCCCcEEEEecCCc---cceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee
Q 005235          465 ETP-----TAPDDNMASIVSWLQHDK---LDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF  536 (707)
Q Consensus       465 ~~~-----~~~~~~d~~i~iW~~~~~---~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~  536 (707)
                      .|+     ++.++. +.+.+|++.++   ....+..|...+.+++|||+|++|++++. +   .|.+|++.++... ...
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~---~i~~~d~~~g~~~-~~~  188 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-R---NLWVIDLASGRQM-QLT  188 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-T---EEEEEETTTTEEE-ECC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-C---cEEEEecCCCCEE-Eec
Confidence            554     343333 89999999887   66567778889999999999999999884 3   8999999987664 333


Q ss_pred             -ccCCC----------------eEEEEEeCCCCEEEEEe-CC---------------------------------eEEEE
Q 005235          537 -KLHGL----------------PVSSVFHPTRSIFFVST-KK---------------------------------NIRVY  565 (707)
Q Consensus       537 -~~~~~----------------V~~v~fspd~~~l~v~s-dg---------------------------------~I~iw  565 (707)
                       .+...                +.+++|+|||++|++++ ++                                 .|++|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence             22221                47899999999988876 54                                 88999


Q ss_pred             ECCC-CeEEEEEe--CCCCCeEEEEEcCCCCEEEEEEC-----CCcEEEEECCCCCcceEEeecCCC----CEEEEEEcC
Q 005235          566 DLLK-QRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSR-----EGKLCWFDMDLSSKPYRVLKCHPK----DITNVAFHR  633 (707)
Q Consensus       566 Dl~~-~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~-----Dg~I~vwDl~~~~~~~~~l~~h~~----~I~~vafsp  633 (707)
                      |+.+ ++......  .+...+.+++| |+|++|++++.     +..|++||+.++ .+...+..+..    .+.+++|+|
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECT
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECC
Confidence            9988 77554332  35677999999 99999998764     567999999877 55566655543    456899999


Q ss_pred             CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE-EEcCCCCEEEE-EeCCC--cEEEEeC
Q 005235          634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC-KFHPRQPWLFT-AGADS--VIRLYCH  707 (707)
Q Consensus       634 dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l-~fspdg~~L~s-~g~Dg--~IrlWdl  707 (707)
                      +|+++++++.||.++||.+.    +...     +..+..|...    |.++ .|+|++++|+. ++.++  .++||++
T Consensus       347 dg~~~~~~~~~g~~~l~~~~----~~~~-----~~~l~~~~~~----v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRID----SKGK-----AAALTHGNWS----VDELLAVDEKAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEEC----SSSC-----EEESCCSSSC----EEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred             CCeEEEEecCCCccEEEEEc----CCCC-----eeeeeecceE----EEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence            99999999999999999652    2221     4566777655    8887 59999998754 55555  8999963

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=2.2e-19  Score=210.72  Aligned_cols=269  Identities=11%  Similarity=0.077  Sum_probs=175.5

Q ss_pred             cEEEEEeC---------CCcEEEEeCCCCeEEEEEec----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235          389 YLEYKGST---------DGTVRIWEVESGRCLRVLEI----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       389 ~~l~sgs~---------DgtVrIWd~~tg~~l~~l~~----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~  455 (707)
                      .++++++.         ++.|++||+.++++ ..+..    ...+.+++|||||.  .++.+.++.|++|++.++.... 
T Consensus        73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~~~i~~~~~~~g~~~~-  148 (723)
T 1xfd_A           73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFENNIYYCAHVGKQAIR-  148 (723)
T ss_dssp             SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEETTEEEEESSSSSCCEE-
T ss_pred             CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEECCeEEEEECCCCceEE-
Confidence            36666655         37889999999886 33433    23488999999993  4555556899999987653210 


Q ss_pred             ccccceeeecccccccCCCCcEEEEecCCccceEEecc---------CCCeEEEEEcCCCCEEEEEeCCCC---------
Q 005235          456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH---------FKMVSSVEWHRRGDYLSTVMPAGE---------  517 (707)
Q Consensus       456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h---------~~~V~~v~~sp~g~~lat~s~dg~---------  517 (707)
                                             +-.. ........++         .+.+.+++|||+|++|++++.++.         
T Consensus       149 -----------------------~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~  204 (723)
T 1xfd_A          149 -----------------------VVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT  204 (723)
T ss_dssp             -----------------------EECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred             -----------------------EecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeec
Confidence                                   0000 0000001111         123478999999999999875431         


Q ss_pred             ----------------------ccEEEEEECCCCceeeeee-c------cCCCeEEEEEeCCCCEEEEEe-C----CeEE
Q 005235          518 ----------------------SRAIFMHQLSKKLSHRIPF-K------LHGLPVSSVFHPTRSIFFVST-K----KNIR  563 (707)
Q Consensus       518 ----------------------~~~V~Iwdl~~~~~~~~~~-~------~~~~V~~v~fspd~~~l~v~s-d----g~I~  563 (707)
                                            ...|.+||+.++... ..+ .      +...+.+++|+|+|++|+++. .    ..|+
T Consensus       205 ~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~  283 (723)
T 1xfd_A          205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD-LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT  283 (723)
T ss_dssp             CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC-EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred             cCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee-EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence                                  238999999888753 344 2      256789999999999887764 2    5799


Q ss_pred             EEECCCCeEEEEEeC-CCCCeE----EEEEcCCCCEEEE--EECCC------cEEEEECCCCCc--ceEEeecCCCCEEE
Q 005235          564 VYDLLKQRLIKKLET-GLKEVS----SIAIHPAGDNLIV--GSREG------KLCWFDMDLSSK--PYRVLKCHPKDITN  628 (707)
Q Consensus       564 iwDl~~~~~~~~l~~-~~~~I~----sl~~spdg~~L~s--Gs~Dg------~I~vwDl~~~~~--~~~~l~~h~~~I~~  628 (707)
                      +||+.++++...+.. +..++.    +++|+|+|+.|+.  +..++      .|.+||+..+..  +...+..+...+..
T Consensus       284 ~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~  363 (723)
T 1xfd_A          284 LCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK  363 (723)
T ss_dssp             EEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred             EEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEe
Confidence            999999887766543 334443    8899999997775  44566      577777323323  14455544445554


Q ss_pred             -EEEcCCCCEEEEEeCC---CcEEEEecccccCCCCCCcccceEEeeC---CCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235          629 -VAFHRSYPLFASCSDD---CTAYVFHGMVYSDLNQNPLIVPLEILRG---HTSSNGRGVMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       629 -vafspdg~llaSgs~D---g~I~Vwd~~~~~Dl~~~~~~~pl~~l~g---h~~~~~~gV~~l~fspdg~~L~s~g  697 (707)
                       ++|+|+|+.|+..+.+   +.++||.+..    .....   ...+.+   |...    +..++|+|+|++|+...
T Consensus       364 ~~~~spdg~~l~~~~~~~~~~~~~l~~~~~----~~~~~---~~~l~~~~~~~~~----~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANT----VGNFN---RQCLSCDLVENCT----YFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             EEEEETTTTEEEEEESSSCTTCCEEEEECS----STTCC---CBCSSTTSSSSCC----CCEEEECTTSSEEEEEC
T ss_pred             eeEEcCCCCEEEEEEcCCCCcceEEEEEeC----CCCCC---cceecccccCCCC----eEEEEECCCCCEEEEEc
Confidence             6999999988766554   7899997632    22111   122332   4443    88999999999887653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=2.8e-19  Score=189.25  Aligned_cols=272  Identities=8%  Similarity=-0.019  Sum_probs=184.2

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCC--cEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGE--AIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~--~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      +.....++++++.+++|++||+.+++.+..+....  .+.+++|+|++. .+++++ .++.|.+|++.++...       
T Consensus         7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~i~~~d~~t~~~~-------   78 (349)
T 1jmx_B            7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR-TAYVLNNHYGDIYGIDLDTCKNT-------   78 (349)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS-EEEEEETTTTEEEEEETTTTEEE-------
T ss_pred             ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCC-EEEEEeCCCCcEEEEeCCCCcEE-------
Confidence            34456789999999999999999999999888755  789999999994 444444 5788999997665221       


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEecc-----CCCeEEEEEcCCCCEEEEEeCC---------CCccEEEEEEC
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH-----FKMVSSVEWHRRGDYLSTVMPA---------GESRAIFMHQL  526 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h-----~~~V~~v~~sp~g~~lat~s~d---------g~~~~V~Iwdl  526 (707)
                                       ...         ...+     ...+.+++|+|+|++|++++.+         ...+.|.+||+
T Consensus        79 -----------------~~~---------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~  132 (349)
T 1jmx_B           79 -----------------FHA---------NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  132 (349)
T ss_dssp             -----------------EEE---------ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             -----------------EEE---------EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence                             000         0111     2347889999999999998854         00139999999


Q ss_pred             CCCceee--eeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCC-----------------------
Q 005235          527 SKKLSHR--IPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLK-----------------------  581 (707)
Q Consensus       527 ~~~~~~~--~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~-----------------------  581 (707)
                      .++....  ..+.+...+.+++|+|+++ ++++ ++.|.+||+.+++.+..+..+..                       
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (349)
T 1jmx_B          133 ADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF  210 (349)
T ss_dssp             GGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred             CCccccceeeeccCCCcccceeECCCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence            8754321  2334455788999999999 6554 44599999999988887764420                       


Q ss_pred             -CeEEEEEcCCCCEEEEEECCC-cEEEEECCCCCcceEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccCC
Q 005235          582 -EVSSIAIHPAGDNLIVGSREG-KLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSDL  658 (707)
Q Consensus       582 -~I~sl~~spdg~~L~sGs~Dg-~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vwd~~~~~Dl  658 (707)
                       ...++++++++.......... .+..+|+.++......+..+...+.+++|+| ++.+|+++  ++.|.+||.      
T Consensus       211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~------  282 (349)
T 1jmx_B          211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDL------  282 (349)
T ss_dssp             EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEET------
T ss_pred             EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEEC------
Confidence             245567776552221111111 1223555544322233334566789999999 99998888  889999954      


Q ss_pred             CCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .+...   +..+..+..     +.+++|+|++.+|++++.++.|.+||+
T Consensus       283 ~~~~~---~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          283 KQRKL---IKAANLDHT-----YYCVAFDKKGDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             TTTEE---EEEEECSSC-----CCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             ccCeE---EEEEcCCCC-----ccceEECCCCCEEEEecCCCeEEEEec
Confidence            34332   444443322     789999999999988889999999985

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=2.6e-19  Score=183.67  Aligned_cols=217  Identities=12%  Similarity=0.070  Sum_probs=167.2

Q ss_pred             CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC-Cceeeeee-cc-CCCeEEEEEe
Q 005235          472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK-KLSHRIPF-KL-HGLPVSSVFH  548 (707)
Q Consensus       472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~-~~~~~~~~-~~-~~~V~~v~fs  548 (707)
                      +.++.+.+|+..+.....+..|...|.+++|+|+|++|++++ ++   .|.+|++.+ +... ..+ .+ ...+.+++|+
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~---~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EG---LLYRLSLAGDPSPE-KVDTGFATICNNDHGIS   93 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TT---EEEEEESSSCCSCE-ECCCTTCCCBCSCCEEC
T ss_pred             CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CC---eEEEEeCCCCCCce-EeccccccccccceEEC
Confidence            345667777776666656677899999999999999999987 55   999999998 7665 444 33 4778999999


Q ss_pred             CCCCEEEEEe-C----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEE-EEECCCcEEEEECCCCCcceEEeecC
Q 005235          549 PTRSIFFVST-K----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLI-VGSREGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       549 pd~~~l~v~s-d----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~-sGs~Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                      |++++|++++ +    ..|.+|++.++. ...+..+ ..+.+++|+|+|++|+ +++.++.+.||+++........+..|
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~  171 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG  171 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence            9999999887 2    455555666554 3444444 4589999999999887 78889999999976544556777788


Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC--
Q 005235          623 PKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD--  699 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D--  699 (707)
                      ...+.+++|+|++++|+.++ .++.++||++..    ...    .+..+..|...    +.+++|+|++.+|++++.+  
T Consensus       172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~----~~~----~~~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~~  239 (297)
T 2ojh_A          172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV----DGS----SVERITDSAYG----DWFPHPSPSGDKVVFVSYDAD  239 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----TSS----CEEECCCCSEE----EEEEEECTTSSEEEEEEEETT
T ss_pred             CCccccceECCCCCEEEEEecCCCCccEEEECC----CCC----CcEEEecCCcc----cCCeEECCCCCEEEEEEcCCC
Confidence            88999999999999877666 589999996632    111    25566777655    9999999999999888876  


Q ss_pred             ---------CcEEEEeC
Q 005235          700 ---------SVIRLYCH  707 (707)
Q Consensus       700 ---------g~IrlWdl  707 (707)
                               +.|.+|++
T Consensus       240 ~~~~~~~~~~~l~~~d~  256 (297)
T 2ojh_A          240 VFDHPRDLDVRVQLMDM  256 (297)
T ss_dssp             CCSCCSSEEEEEEEEET
T ss_pred             CCcccccCceEEEEEec
Confidence                     56999985

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.82  E-value=3.1e-18  Score=180.42  Aligned_cols=259  Identities=12%  Similarity=0.061  Sum_probs=175.5

Q ss_pred             CCCcEEEEEeCC-CcEEEEeCC--CCe--EEEEEecCCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhccccc
Q 005235          386 VACYLEYKGSTD-GTVRIWEVE--SGR--CLRVLEIGEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       386 ~~~~~l~sgs~D-gtVrIWd~~--tg~--~l~~l~~~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      .++.++++++.+ +.|++|++.  ++.  .+..+.....+.+++|+|++. .+++++. ++.|.+|++..+..       
T Consensus        47 pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~i~~~d~~~~~~-------  118 (343)
T 1ri6_A           47 PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLP-------  118 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS-EEEEEETTTTEEEEEEEETTEE-------
T ss_pred             CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCC-EEEEEecCCCeEEEEECCCCcc-------
Confidence            344567776665 999999998  665  444555556899999999994 4656654 77899998742100       


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCC-Cceeee---
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSK-KLSHRI---  534 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~-~~~~~~---  534 (707)
                                               ............+.+++|+|+|++|++++ .++   .|.+|++.+ +.....   
T Consensus       119 -------------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---~v~~~d~~~~~~~~~~~~~  170 (343)
T 1ri6_A          119 -------------------------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQD---RICLFTVSDDGHLVAQDPA  170 (343)
T ss_dssp             -------------------------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT---EEEEEEECTTSCEEEEEEE
T ss_pred             -------------------------ccccccccCCCCceEEEECCCCCEEEEecCCCC---EEEEEEecCCCceeeeccc
Confidence                                     00001223345688999999999888887 666   999999987 543211   


Q ss_pred             ee--ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--CeE--EEEEeC---C---CCCeEEEEEcCCCCEEEEEE-
Q 005235          535 PF--KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--QRL--IKKLET---G---LKEVSSIAIHPAGDNLIVGS-  599 (707)
Q Consensus       535 ~~--~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~~~--~~~l~~---~---~~~I~sl~~spdg~~L~sGs-  599 (707)
                      .+  .....+.+++|+|++.+|++++  ++.|.+|++..  ++.  ...+..   +   ...+.+++|+|+|++|+++. 
T Consensus       171 ~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~  250 (343)
T 1ri6_A          171 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR  250 (343)
T ss_dssp             EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred             ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence            23  3445788999999999887665  79999999953  432  333331   1   23577899999999887554 


Q ss_pred             CCCcEEEEECCC--C-CcceEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCC
Q 005235          600 REGKLCWFDMDL--S-SKPYRVLKCHPKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS  675 (707)
Q Consensus       600 ~Dg~I~vwDl~~--~-~~~~~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~  675 (707)
                      .++.|.+||+..  + .+.+..+..+.. +.+++|+|++++|++++ .++.|.||++.    ..++. ...+..+.....
T Consensus       251 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d----~~~g~-~~~~~~~~~g~~  324 (343)
T 1ri6_A          251 TASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV----GEQGL-LHEKGRYAVGQG  324 (343)
T ss_dssp             TTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE----TTTTE-EEEEEEEECSSS
T ss_pred             CCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc----CCCce-eeEccccccCCC
Confidence            789999999983  2 134445555544 88999999999888777 68999999652    22222 123444444322


Q ss_pred             CCCCCeeEEEEcCCCC
Q 005235          676 SNGRGVMDCKFHPRQP  691 (707)
Q Consensus       676 ~~~~gV~~l~fspdg~  691 (707)
                           ..+++|+|+..
T Consensus       325 -----p~~i~~~~~~~  335 (343)
T 1ri6_A          325 -----PMWVVVNAHEG  335 (343)
T ss_dssp             -----CCEEEEEEEC-
T ss_pred             -----CeeEEEEcccC
Confidence                 67788877543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=3.1e-17  Score=175.81  Aligned_cols=270  Identities=9%  Similarity=0.057  Sum_probs=179.2

Q ss_pred             cEEEEEe----CCCcEEEEeC--CCCeEE--EEEecCCcEEEEEEccCCCccEEEEEeC----CeEEEEECCCCCchhcc
Q 005235          389 YLEYKGS----TDGTVRIWEV--ESGRCL--RVLEIGEAIQYVAWNPLPELPVLAVSVG----QDVLILNTGLGNEEEQR  456 (707)
Q Consensus       389 ~~l~sgs----~DgtVrIWd~--~tg~~l--~~l~~~~~V~~v~~spdg~~~lla~s~d----~~V~lwd~~~~~~~~~~  456 (707)
                      .+++.|+    .++.|.+|.+  .+|+..  ..+ ....+..++|+|+|. .|++++.+    +.|.+|++....     
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~-----   86 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEK-----   86 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSS-EEEEEECCSSTTCEEEEEEEETTT-----
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCC-EEEEEEccCCCCCcEEEEEEeCCC-----
Confidence            3566663    4678999866  556543  333 467788899999993 56666664    688888764320     


Q ss_pred             cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee
Q 005235          457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF  536 (707)
Q Consensus       457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~  536 (707)
                                        +.+...       .....+...+..+++  +|++|++++..+  +.|.+|++...... ..+
T Consensus        87 ------------------g~~~~~-------~~~~~~~~~p~~~~~--dg~~l~~~~~~~--~~v~~~~~~~~g~~-~~~  136 (361)
T 3scy_A           87 ------------------GTLHLL-------NTQKTMGADPCYLTT--NGKNIVTANYSG--GSITVFPIGQDGAL-LPA  136 (361)
T ss_dssp             ------------------TEEEEE-------EEEECSSSCEEEEEE--CSSEEEEEETTT--TEEEEEEBCTTSCB-CSC
T ss_pred             ------------------CcEEEe-------eEeccCCCCcEEEEE--CCCEEEEEECCC--CEEEEEEeCCCCcC-ccc
Confidence                              111100       112234556777888  888888777432  39999999754332 111


Q ss_pred             ----cc-----------CCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe-------EE------EEEeCCCCCeEEE
Q 005235          537 ----KL-----------HGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR-------LI------KKLETGLKEVSSI  586 (707)
Q Consensus       537 ----~~-----------~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~-------~~------~~l~~~~~~I~sl  586 (707)
                          .+           ...+.+++|+|++++|+++.  ++.|.+|++....       +.      .........+.++
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  216 (361)
T 3scy_A          137 SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHL  216 (361)
T ss_dssp             SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEE
T ss_pred             ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEE
Confidence                11           23458899999999887766  6899999887532       21      1122334568899


Q ss_pred             EEcCCCCEEEEEE-CCCcEEEEECCCCCcc--eEEee---cCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecccccCC
Q 005235          587 AIHPAGDNLIVGS-REGKLCWFDMDLSSKP--YRVLK---CHPKDITNVAFHRSYPLFASCSD--DCTAYVFHGMVYSDL  658 (707)
Q Consensus       587 ~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~--~~~l~---~h~~~I~~vafspdg~llaSgs~--Dg~I~Vwd~~~~~Dl  658 (707)
                      +|+|+|++|++++ .++.|.+||+.++ ..  +..+.   .+.....+++|+|+|++|+++..  +++|.||++.    .
T Consensus       217 ~~spdg~~l~v~~~~~~~v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~----~  291 (361)
T 3scy_A          217 IFNSDGKFAYLINEIGGTVIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD----E  291 (361)
T ss_dssp             EECTTSSEEEEEETTTCEEEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC----T
T ss_pred             EEcCCCCEEEEEcCCCCeEEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc----C
Confidence            9999999888777 6899999999854 32  22232   23355789999999998866554  5899999653    1


Q ss_pred             CCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235          659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYC  706 (707)
Q Consensus       659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWd  706 (707)
                      .++. ...+..+.. ...    +.+++|+|+|++|++++ .++.|.+|.
T Consensus       292 ~~g~-~~~~~~~~~-g~~----~~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          292 TNGT-LTKVGYQLT-GIH----PRNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             TTCC-EEEEEEEEC-SSC----CCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             CCCc-EEEeeEecC-CCC----CceEEECCCCCEEEEEECCCCCEEEEE
Confidence            1222 123444444 233    88999999999998887 678999975

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=4.3e-19  Score=203.44  Aligned_cols=253  Identities=13%  Similarity=0.050  Sum_probs=179.5

Q ss_pred             EEEEEeC-CCcEEEEeCCCCeEEEEEecC-CcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcccccceeee
Q 005235          390 LEYKGST-DGTVRIWEVESGRCLRVLEIG-EAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       390 ~l~sgs~-DgtVrIWd~~tg~~l~~l~~~-~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      .|+.++. ||+++||++.+|++.+...+. ..|.+++|+||.  .++++..   +....||.+....             
T Consensus        35 ~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~--~l~~~~~~~g~~~~~l~~~~~~~-------------   99 (582)
T 3o4h_A           35 KLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGR--VILVRDVSKGAEQHALFKVNTSR-------------   99 (582)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSE--EEEEEECSTTSCCEEEEEEETTS-------------
T ss_pred             eEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCe--EEEEeccCCCCcceEEEEEeccC-------------
Confidence            6666655 999999999777765544444 589999999983  4555543   3444555432200             


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCE--EEEEeCCCCccEEEEEECCCCceeeeeeccCCCe
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDY--LSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLP  542 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~--lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V  542 (707)
                                        .+...  .......+...+|+|+|+.  +++++.+    .+.|||+.++... ....+..  
T Consensus       100 ------------------~g~~~--~l~~~~~~~~~~~s~dg~~~~~~s~~~~----~~~l~d~~~g~~~-~l~~~~~--  152 (582)
T 3o4h_A          100 ------------------PGEEQ--RLEAVKPMRILSGVDTGEAVVFTGATED----RVALYALDGGGLR-ELARLPG--  152 (582)
T ss_dssp             ------------------TTCCE--ECTTSCSBEEEEEEECSSCEEEEEECSS----CEEEEEEETTEEE-EEEEESS--
T ss_pred             ------------------CCccc--cccCCCCceeeeeCCCCCeEEEEecCCC----CceEEEccCCcEE-EeecCCC--
Confidence                              00111  1122223446688888864  4444433    4459999888654 3333333  


Q ss_pred             EEEEEeCCCCEEEEEe-C----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC--cEEEEECCCCCcc
Q 005235          543 VSSVFHPTRSIFFVST-K----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG--KLCWFDMDLSSKP  615 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s-d----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg--~I~vwDl~~~~~~  615 (707)
                      .+++|+|||++|++++ +    +.|++||+.+++.. .+..+...+.+++|||||+.|++++.++  .|++||+.++ .+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~-~~  230 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG-SV  230 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC-CE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC-cE
Confidence            8899999999999765 5    68999999988754 6777878899999999999999888888  8999999876 44


Q ss_pred             eEEeecCCCCEEEEE--------EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc
Q 005235          616 YRVLKCHPKDITNVA--------FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH  687 (707)
Q Consensus       616 ~~~l~~h~~~I~~va--------fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs  687 (707)
                      . .+..|...+.+++        |+|+|.++++++.||+++||++        +..   +.   .+...    |.+++|+
T Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--------g~~---~~---~~~~~----v~~~~~s  291 (582)
T 3o4h_A          231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--------GER---VE---APQGN----HGRVVLW  291 (582)
T ss_dssp             E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--------TEE---EC---CCSSE----EEEEEEE
T ss_pred             E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--------CCe---ec---cCCCc----eEEEEec
Confidence            4 7778877777777        9999999999999999999954        111   11   22233    8999999


Q ss_pred             CCCCEEEEEeCCCc---EEEEe
Q 005235          688 PRQPWLFTAGADSV---IRLYC  706 (707)
Q Consensus       688 pdg~~L~s~g~Dg~---IrlWd  706 (707)
                       ++.++++++.+.+   |.+|+
T Consensus       292 -dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          292 -RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             -TTEEEEEEEETTEEEEEEEET
T ss_pred             -CCEEEEEEcCCCCCCeEEEEc
Confidence             9999999888754   55554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=1.7e-17  Score=176.04  Aligned_cols=239  Identities=12%  Similarity=0.059  Sum_probs=178.1

Q ss_pred             EEecCCcEEEEEEccCCCccEEEEEe-------CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCc
Q 005235          413 VLEIGEAIQYVAWNPLPELPVLAVSV-------GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDK  485 (707)
Q Consensus       413 ~l~~~~~V~~v~~spdg~~~lla~s~-------d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~  485 (707)
                      .......+..++|+|++. .+++++.       ++.|.+||+.++..                                 
T Consensus        36 ~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------------------------------   81 (353)
T 3vgz_A           36 RKAVGKGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEV---------------------------------   81 (353)
T ss_dssp             EEEEESSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTCCE---------------------------------
T ss_pred             hhhhccCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------------------
Confidence            344466788999999994 5555553       45777777655421                                 


Q ss_pred             cceEEeccCCCeEEEEEcCCCCEEEEEeC-CCCccEEEEEECCCCceeeeee-ccCC---------CeEEEEEeCCCCEE
Q 005235          486 LDGIRLRHFKMVSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPF-KLHG---------LPVSSVFHPTRSIF  554 (707)
Q Consensus       486 ~~~~~~~h~~~V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~~~~-~~~~---------~V~~v~fspd~~~l  554 (707)
                        .........+..++|+++|+++++++. ++   .|.+||+.++... ..+ .+.+         .+.+++|+|++.++
T Consensus        82 --~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~---~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  155 (353)
T 3vgz_A           82 --TQAIHNDLKPFGATINNTTQTLWFGNTVNS---AVTAIDAKTGEVK-GRLVLDDRKRTEEVRPLQPRELVADDATNTV  155 (353)
T ss_dssp             --EEEEEESSCCCSEEEETTTTEEEEEETTTT---EEEEEETTTCCEE-EEEESCCCCCCSSCCCCEEEEEEEETTTTEE
T ss_pred             --EEEEecCCCcceEEECCCCCEEEEEecCCC---EEEEEeCCCCeeE-EEEecCCCccccccCCCCCceEEECCCCCEE
Confidence              112223445788999999997766655 44   9999999998876 555 2221         26889999999988


Q ss_pred             EEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec----CCCCEE
Q 005235          555 FVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC----HPKDIT  627 (707)
Q Consensus       555 ~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~----h~~~I~  627 (707)
                      +++.   ++.|.+||+.+++.+..+..+...+.+++|+|+|++|++++.++.|.+||+.++ +....+..    +...+.
T Consensus       156 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~  234 (353)
T 3vgz_A          156 YISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFI  234 (353)
T ss_dssp             EEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEE
T ss_pred             EEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccc
Confidence            8775   688999999999999888755566889999999999999999999999999877 56666654    556788


Q ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEE
Q 005235          628 NVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLY  705 (707)
Q Consensus       628 ~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlW  705 (707)
                      +++|+|++.++++++ .++.|.+||.      .+...   +..+..+.      ..+++|+|++.+|+.++ .++.|.+|
T Consensus       235 ~~~~s~dg~~l~~~~~~~~~v~~~d~------~~~~~---~~~~~~~~------~~~~~~s~dg~~l~v~~~~~~~v~~~  299 (353)
T 3vgz_A          235 NISLDTARQRAFITDSKAAEVLVVDT------RNGNI---LAKVAAPE------SLAVLFNPARNEAYVTHRQAGKVSVI  299 (353)
T ss_dssp             EEEEETTTTEEEEEESSSSEEEEEET------TTCCE---EEEEECSS------CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEC------CCCcE---EEEEEcCC------CceEEECCCCCEEEEEECCCCeEEEE
Confidence            999999999666555 5599999954      34433   44444332      35689999999776555 68999999


Q ss_pred             eC
Q 005235          706 CH  707 (707)
Q Consensus       706 dl  707 (707)
                      |+
T Consensus       300 d~  301 (353)
T 3vgz_A          300 DA  301 (353)
T ss_dssp             ET
T ss_pred             EC
Confidence            85

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.81  E-value=1.2e-17  Score=176.17  Aligned_cols=234  Identities=9%  Similarity=0.083  Sum_probs=164.7

Q ss_pred             EEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE
Q 005235          423 VAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW  502 (707)
Q Consensus       423 v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~  502 (707)
                      ..|.+++...+++.+.++.|.+||+.++...                                  .....+...+ +++|
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~----------------------------------~~~~~~~~~~-~~~~   47 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL----------------------------------NQITLGYDFV-DTAI   47 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEE----------------------------------EEEECCCCEE-EEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccccee----------------------------------eeEEccCCcc-eEEE
Confidence            3456666434555556788999987665321                                  1122234455 9999


Q ss_pred             cCCCCEEEEEeC-CCCccEEEEEECCCCce-eeeee-ccCCCeEEEEEeCCCCEEEEEeCC----eEEEEECCCCeEEEE
Q 005235          503 HRRGDYLSTVMP-AGESRAIFMHQLSKKLS-HRIPF-KLHGLPVSSVFHPTRSIFFVSTKK----NIRVYDLLKQRLIKK  575 (707)
Q Consensus       503 sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~-~~~~~-~~~~~V~~v~fspd~~~l~v~sdg----~I~iwDl~~~~~~~~  575 (707)
                      +|+|+++++++. ++   .|.+||+.++.. . ..+ .+..+..+++|+|++++|+++.++    .|.+||+.+++.+..
T Consensus        48 s~dg~~l~~~~~~~~---~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A           48 TSDCSNVVVTSDFCQ---TLVQIETQLEPPKV-VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             CSSSCEEEEEESTTC---EEEEEECSSSSCEE-EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred             cCCCCEEEEEeCCCC---eEEEEECCCCceeE-EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence            999998877776 45   999999998886 4 556 444555559999999999965533    899999999998888


Q ss_pred             EeCCCCCeEEEEEcCCCCEEEEE-ECCCc-EEEEECCCCCcce---EEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEE
Q 005235          576 LETGLKEVSSIAIHPAGDNLIVG-SREGK-LCWFDMDLSSKPY---RVLKCHPKDITNVAFHRSYPLF-ASCSDDCTAYV  649 (707)
Q Consensus       576 l~~~~~~I~sl~~spdg~~L~sG-s~Dg~-I~vwDl~~~~~~~---~~l~~h~~~I~~vafspdg~ll-aSgs~Dg~I~V  649 (707)
                      +..+ ..+.+++|+|+|++|+++ ..++. |.+|++.......   .....+.....+++|+|+|+++ +++..++.|.+
T Consensus       124 ~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  202 (331)
T 3u4y_A          124 IPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGI  202 (331)
T ss_dssp             EECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence            8765 457999999999865554 55688 9999998653322   1122345568999999999954 55557899999


Q ss_pred             EecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235          650 FHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       650 wd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWdl  707 (707)
                      |+.      .+.....++..+..+..     +.+++|+|+|++|+.++ .++.|.+||+
T Consensus       203 ~d~------~~~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          203 LET------QNPENITLLNAVGTNNL-----PGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             EEC------SSTTSCEEEEEEECSSC-----CCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             EEC------CCCcccceeeeccCCCC-----CceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            954      33333223555655432     78999999999876654 5788999984

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=5.6e-19  Score=207.51  Aligned_cols=267  Identities=11%  Similarity=0.048  Sum_probs=182.5

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCC----cEEEEEEccCCCccEEEEEe---------CCeEEEEECCCCCc
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIGE----AIQYVAWNPLPELPVLAVSV---------GQDVLILNTGLGNE  452 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~----~V~~v~~spdg~~~lla~s~---------d~~V~lwd~~~~~~  452 (707)
                      .++.++++ +.|++|++||+.+|++...+....    .|.+++|||||+ .|+.++.         ++.|.+|++.++..
T Consensus        25 ~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d~~~g~~  102 (719)
T 1z68_A           25 SGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYDLSNGEF  102 (719)
T ss_dssp             SSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             CCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCC-eEEEEecCceeEEeecceEEEEEECCCCcc
Confidence            34455555 469999999999999887776632    489999999994 5555554         47788888766521


Q ss_pred             hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235          453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH  532 (707)
Q Consensus       453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~  532 (707)
                      .                                   ........+.+++|||+|++||++. ++   .|++|++.++...
T Consensus       103 ~-----------------------------------~~~~l~~~~~~~~~SPDG~~la~~~-~~---~i~~~~~~~g~~~  143 (719)
T 1z68_A          103 V-----------------------------------RGNELPRPIQYLCWSPVGSKLAYVY-QN---NIYLKQRPGDPPF  143 (719)
T ss_dssp             C-----------------------------------CSSCCCSSBCCEEECSSTTCEEEEE-TT---EEEEESSTTSCCE
T ss_pred             c-----------------------------------cceecCcccccceECCCCCEEEEEE-CC---eEEEEeCCCCCcE
Confidence            0                                   0001124688899999999999986 45   9999999887664


Q ss_pred             eeee-ccCCC-----------------eEEEEEeCCCCEEEEEe-CC---------------------------------
Q 005235          533 RIPF-KLHGL-----------------PVSSVFHPTRSIFFVST-KK---------------------------------  560 (707)
Q Consensus       533 ~~~~-~~~~~-----------------V~~v~fspd~~~l~v~s-dg---------------------------------  560 (707)
                      .... ++...                 ..+++|+|||+.|++++ +.                                 
T Consensus       144 ~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~  223 (719)
T 1z68_A          144 QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPV  223 (719)
T ss_dssp             ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCE
T ss_pred             EEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCe
Confidence            1222 22222                 25899999999999876 42                                 


Q ss_pred             -eEEEEECCCCeEE--EE------EeCCCCCeEEEEEcCCCCEEEEEECCC----cEEEEE----CCCCCcceEEe----
Q 005235          561 -NIRVYDLLKQRLI--KK------LETGLKEVSSIAIHPAGDNLIVGSREG----KLCWFD----MDLSSKPYRVL----  619 (707)
Q Consensus       561 -~I~iwDl~~~~~~--~~------l~~~~~~I~sl~~spdg~~L~sGs~Dg----~I~vwD----l~~~~~~~~~l----  619 (707)
                       .|++||+.+++..  ..      +.++...+.+++|+|||.++++....+    .|.+||    +.++ ++...+    
T Consensus       224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~  302 (719)
T 1z68_A          224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIE  302 (719)
T ss_dssp             EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEE
T ss_pred             eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEeccc
Confidence             7889999887642  11      234667799999999987777754332    488899    7655 333333    


Q ss_pred             ecCCCCEE-----EEEEcCCCCEEE--EEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235          620 KCHPKDIT-----NVAFHRSYPLFA--SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW  692 (707)
Q Consensus       620 ~~h~~~I~-----~vafspdg~lla--Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~  692 (707)
                      ..|...+.     .++|+|+|+.|+  ++..+|...||-.    ++....    ...+..+...    |..+.++ ++.+
T Consensus       303 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~----~~~~~~----~~~lt~~~~~----v~~~~~~-d~~~  369 (719)
T 1z68_A          303 ESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYI----KDTVEN----AIQITSGKWE----AINIFRV-TQDS  369 (719)
T ss_dssp             ECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEE----SSCSTT----CEECSCSSSC----EEEEEEE-CSSE
T ss_pred             ccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEE----ECCCCc----eEecccCceE----EEEEEEE-eCCE
Confidence            46777676     889999999544  4556675555432    333332    3455555444    8888888 8888


Q ss_pred             EEEEeCC-----CcEEEEeC
Q 005235          693 LFTAGAD-----SVIRLYCH  707 (707)
Q Consensus       693 L~s~g~D-----g~IrlWdl  707 (707)
                      |+..+.+     +.++||.+
T Consensus       370 i~~~~~~~~~~~~~~~l~~~  389 (719)
T 1z68_A          370 LFYSSNEFEEYPGRRNIYRI  389 (719)
T ss_dssp             EEEEESCGGGCTTCBEEEEE
T ss_pred             EEEEEecCCCCCceEEEEEE
Confidence            8766655     88899863

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=2.5e-18  Score=197.06  Aligned_cols=234  Identities=9%  Similarity=-0.041  Sum_probs=168.6

Q ss_pred             CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccC-
Q 005235          417 GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF-  494 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~-  494 (707)
                      ..+|.+++|+|||. .|+.++. ++++.||++.++.                                   ...+..|. 
T Consensus        21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~-----------------------------------~~~lt~~~~   64 (582)
T 3o4h_A           21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGE-----------------------------------TVKLNREPI   64 (582)
T ss_dssp             HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTE-----------------------------------EEECCSSCC
T ss_pred             ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCC-----------------------------------cEeeecccc
Confidence            45799999999994 5666665 8999999864331                                   11223444 


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC--CceeeeeeccCCCeEEEEEeCCCCE--EEEEeCCeEEEEECCCC
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK--KLSHRIPFKLHGLPVSSVFHPTRSI--FFVSTKKNIRVYDLLKQ  570 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~--~~~~~~~~~~~~~V~~v~fspd~~~--l~v~sdg~I~iwDl~~~  570 (707)
                      ..+.+++|+|+ +.+++++.++......||.+..  .... ..+.....+...+|+|++..  ++++.++.+.+||+.++
T Consensus        65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~-~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g  142 (582)
T 3o4h_A           65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE-QRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG  142 (582)
T ss_dssp             SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC-EECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT
T ss_pred             cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc-ccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC
Confidence            57899999999 6677666533234455555433  2222 33322233456788888864  33334666679999988


Q ss_pred             eEEEEEeCCCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC-
Q 005235          571 RLIKKLETGLKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC-  645 (707)
Q Consensus       571 ~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg-  645 (707)
                      ++......+ .  .+++|||||++|++++.+    +.|++||+.++ . ...+..|...+.+++|||||++|++++.++ 
T Consensus       143 ~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~  217 (582)
T 3o4h_A          143 GLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETARE  217 (582)
T ss_dssp             EEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred             cEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCe
Confidence            766555433 2  789999999999988877    78999999876 3 457888999999999999999999888888 


Q ss_pred             -cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEE--------EcCCCCEEEEEeCCCcEEEEeC
Q 005235          646 -TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCK--------FHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       646 -~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~--------fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                       .|++|      |+.++..   . .+.+|...    +.+++        |+|||.++++++.||+++||++
T Consensus       218 ~~i~~~------d~~~~~~---~-~~~~~~~~----~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          218 ARLVTV------DPRDGSV---E-DLELPSKD----FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEEE------CTTTCCE---E-ECCCSCSH----HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             eEEEEE------cCCCCcE---E-EccCCCcC----hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence             88999      4444443   3 56666654    66666        9999988999999999999975

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=4.2e-17  Score=175.77  Aligned_cols=269  Identities=12%  Similarity=0.074  Sum_probs=176.6

Q ss_pred             EEEEEeCC--CcEEEEeC--CCCeEEE--EEe--cCCcEEEEEEccCCCccEEEEEeCCeEEEEECC-CCCchhcccccc
Q 005235          390 LEYKGSTD--GTVRIWEV--ESGRCLR--VLE--IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTG-LGNEEEQRRVKD  460 (707)
Q Consensus       390 ~l~sgs~D--gtVrIWd~--~tg~~l~--~l~--~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~-~~~~~~~~~~~~  460 (707)
                      .+|.|+..  +.|.+|++  .+|+...  ...  ....+..++|+|+|. .|++++.+ .|.+|++. ++...       
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~-~l~~~~~~-~v~~~~~~~~g~~~-------   74 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERK-NIYGAAMK-KWSSFAVKSPTEIV-------   74 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSS-EEEEEEBT-EEEEEEEEETTEEE-------
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCC-EEEEEccc-eEEEEEECCCCCEE-------
Confidence            56677653  56887664  5776532  222  134788999999993 56666666 99999975 33110       


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCE--EEEEe-------------CCCCccEEEEEE
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDY--LSTVM-------------PAGESRAIFMHQ  525 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~--lat~s-------------~dg~~~~V~Iwd  525 (707)
                                       .+.        .... .+.+.+++|+|+|++  ++++.             .++   .+.+|+
T Consensus        75 -----------------~~~--------~~~~-~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g---~v~v~~  125 (365)
T 1jof_A           75 -----------------HEA--------SHPI-GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG---YGNVFS  125 (365)
T ss_dssp             -----------------EEE--------EEEC-CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC---EEEEEE
T ss_pred             -----------------Eee--------Eeec-CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc---eEEEEc
Confidence                             000        0001 123556899999995  44442             455   899999


Q ss_pred             CCC-Cceeeeee-----ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC-CCeEE--EEEe--CCCCCeEEEEEcCCC
Q 005235          526 LSK-KLSHRIPF-----KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL-KQRLI--KKLE--TGLKEVSSIAIHPAG  592 (707)
Q Consensus       526 l~~-~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~-~~~~~--~~l~--~~~~~I~sl~~spdg  592 (707)
                      +.. +... ..+     .+...+.+++|+|+|++|+++.  ++.|++||+. ++++.  ..+.  .+...+..++|+|+|
T Consensus       126 ~~~~g~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg  204 (365)
T 1jof_A          126 VSETGKLE-KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG  204 (365)
T ss_dssp             ECTTCCEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS
T ss_pred             cCCCCcCc-ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC
Confidence            974 4433 233     2456899999999999988876  5899999998 67643  3343  234668999999999


Q ss_pred             CEEEEEEC-CCcEEEEECCCC-Ccce---EEee-------cCCC------CEEEEE-EcCCCCEEEEEeCC-C-----cE
Q 005235          593 DNLIVGSR-EGKLCWFDMDLS-SKPY---RVLK-------CHPK------DITNVA-FHRSYPLFASCSDD-C-----TA  647 (707)
Q Consensus       593 ~~L~sGs~-Dg~I~vwDl~~~-~~~~---~~l~-------~h~~------~I~~va-fspdg~llaSgs~D-g-----~I  647 (707)
                      ++|++++. ++.|.+|+++.. .+..   ..+.       +|..      .+.+++ |+|+|++|++++.+ .     +|
T Consensus       205 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i  284 (365)
T 1jof_A          205 NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI  284 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE
T ss_pred             CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeE
Confidence            99988775 688999987632 1321   1222       1222      588999 99999987766533 2     89


Q ss_pred             EEEecccccCCCCCCcccceE-EeeCCCCCCCCCeeEEEEcC---CCCEEEEEeCC-CcEEEEeC
Q 005235          648 YVFHGMVYSDLNQNPLIVPLE-ILRGHTSSNGRGVMDCKFHP---RQPWLFTAGAD-SVIRLYCH  707 (707)
Q Consensus       648 ~Vwd~~~~~Dl~~~~~~~pl~-~l~gh~~~~~~gV~~l~fsp---dg~~L~s~g~D-g~IrlWdl  707 (707)
                      .+|++..     ++.+ ..+. .+..+...    +..++|+|   +|++|++++.+ ++|.+|++
T Consensus       285 ~v~~~~~-----~g~~-~~~~~~~~~~~~~----~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          285 AGFKLRD-----CGSI-EKQLFLSPTPTSG----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEEECT-----TSCE-EEEEEEEECSSCC----TTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             EEEEECC-----CCCE-EEeeeeeecCCCC----cccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            9996531     2222 1111 23333332    67789999   89999999865 89999974

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.78  E-value=2.2e-17  Score=193.40  Aligned_cols=259  Identities=12%  Similarity=0.088  Sum_probs=183.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCC-----CCch--hcccccc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL-----GNEE--EQRRVKD  460 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~-----~~~~--~~~~~~~  460 (707)
                      ..++++  .+++|++||+.++++.........+.+++|+|||.  .++.+.++.|.+|++.+     +...  .......
T Consensus        93 ~~~~~~--~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~--~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~  168 (706)
T 2z3z_A           93 GLVVLF--TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGD--RVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTET  168 (706)
T ss_dssp             TEEEEE--ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSS--EEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTT
T ss_pred             CeEEEE--ECCEEEEEECCCCceEEccCCcccccCCcCCCCCC--EEEEEECCeEEEEecCcccccCCCcEEeccCCCCC
Confidence            345554  35999999999998876666677899999999993  45557899999999987     5432  1111111


Q ss_pred             --------------eeeeccc-----ccccC---------------------------------CCCcEEEEecCCccce
Q 005235          461 --------------LLHVETP-----TAPDD---------------------------------NMASIVSWLQHDKLDG  488 (707)
Q Consensus       461 --------------v~~~~~~-----~~~~~---------------------------------~d~~i~iW~~~~~~~~  488 (707)
                                    +..+.|+     ++.++                                 .+..+.+|++.++...
T Consensus       169 ~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~  248 (706)
T 2z3z_A          169 LVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV  248 (706)
T ss_dssp             EEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred             eEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence                          2344444     33332                                 3467899999876654


Q ss_pred             EEe---ccCCCeEEEEEcCCCCEEEEEeCCC--CccEEEEEECCCCceeeeee--ccCC---CeEEEEEeC--CCCEEEE
Q 005235          489 IRL---RHFKMVSSVEWHRRGDYLSTVMPAG--ESRAIFMHQLSKKLSHRIPF--KLHG---LPVSSVFHP--TRSIFFV  556 (707)
Q Consensus       489 ~~~---~h~~~V~~v~~sp~g~~lat~s~dg--~~~~V~Iwdl~~~~~~~~~~--~~~~---~V~~v~fsp--d~~~l~v  556 (707)
                      .+.   .|...+.+++|+|+|++|++++.+.  ....|.+||+.++......+  ....   .+.+++|+|  ++.++++
T Consensus       249 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~  328 (706)
T 2z3z_A          249 YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ  328 (706)
T ss_dssp             ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE
T ss_pred             eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE
Confidence            322   4667899999999999999877553  23489999999883331333  2222   246789999  9998888


Q ss_pred             Ee-CCeEEEEECC-CCeEEEEEeCCCCCeEE-EEEcCCCCEEEEEECC-C----cEEEEECCCCCcceEEeecCCCCEEE
Q 005235          557 ST-KKNIRVYDLL-KQRLIKKLETGLKEVSS-IAIHPAGDNLIVGSRE-G----KLCWFDMDLSSKPYRVLKCHPKDITN  628 (707)
Q Consensus       557 ~s-dg~I~iwDl~-~~~~~~~l~~~~~~I~s-l~~spdg~~L~sGs~D-g----~I~vwDl~~~~~~~~~l~~h~~~I~~  628 (707)
                      +. ++.++||.+. ++..+..+..+...+.+ ++|+|+|+.|++++.+ +    .|..||+.++ . ...+. |...+.+
T Consensus       329 ~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~-~~~~~~~  405 (706)
T 2z3z_A          329 SRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG-K-TKDLT-PESGMHR  405 (706)
T ss_dssp             ECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC-C-CEESC-CSSSEEE
T ss_pred             EccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC-C-ceecc-CCCceEE
Confidence            87 7888888876 56777788877777876 8999999988766554 3    5667777654 3 44454 6778999


Q ss_pred             EEEcCCCCEEEEEeCC----CcEEEEecc
Q 005235          629 VAFHRSYPLFASCSDD----CTAYVFHGM  653 (707)
Q Consensus       629 vafspdg~llaSgs~D----g~I~Vwd~~  653 (707)
                      ++|||+|++|+.++.+    +.|++|+..
T Consensus       406 ~~~spdg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          406 TQLSPDGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             EEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred             EEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence            9999999988766433    469999754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=1.4e-17  Score=184.41  Aligned_cols=224  Identities=17%  Similarity=0.169  Sum_probs=157.0

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcE
Q 005235          398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASI  477 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i  477 (707)
                      +.|++|+... .    + ....++.+++++++  .+++++....|.+|+........              ........+
T Consensus        23 ~~vri~~~~~-~----~-~~~~~n~lavs~~~--~~l~~~~~dgv~v~~~~~~~~~~--------------~~~~~~~~~   80 (434)
T 2oit_A           23 KKVRIFDSPE-E----L-PKERSSLLAVSNKY--GLVFAGGASGLQIFPTKNLLIQN--------------KPGDDPNKI   80 (434)
T ss_dssp             CEEECSCCCS-S----C-CCSCCBCEEEETTT--TEEEEEETTEEEEEEHHHHCCCC--------------CTTCCTTCE
T ss_pred             eeEEecCCcc-c----c-CCCCccEEEEecCC--CEEEEECCCEEEEEEchHhhhhc--------------ccccCcccc
Confidence            4688876431 1    1 13467899999988  34444444458888753210000              000000011


Q ss_pred             EEEecCCccceEEeccCCCeEEEEEcCCCCEEE----EEeCCCCccEEEEEECCCC--------cee--eeee-ccCCCe
Q 005235          478 VSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLS----TVMPAGESRAIFMHQLSKK--------LSH--RIPF-KLHGLP  542 (707)
Q Consensus       478 ~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~la----t~s~dg~~~~V~Iwdl~~~--------~~~--~~~~-~~~~~V  542 (707)
                        ...   .......+...|.+++|+|+|++|+    +++.|+   .|+|||+.+.        +..  ...+ .|...|
T Consensus        81 --~~~---~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V  152 (434)
T 2oit_A           81 --VDK---VQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS---IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMV  152 (434)
T ss_dssp             --EEC---CCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE---EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSE
T ss_pred             --ccc---CccccccCCCcccEEEEcCCCCEEEEEEeccCCCc---eEEEEEccccccCCcCCcceeeeeeccCCCCCce
Confidence              100   0112346778899999999999999    566666   9999998654        111  1334 688999


Q ss_pred             EEEEEeCC-CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235          543 VSSVFHPT-RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       543 ~~v~fspd-~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~  620 (707)
                      .+++|+|+ +.+|++++ |++|++||++++..+....+|...|++++|+|+|.+|++|+.||.|++||++ + .....+.
T Consensus       153 ~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~-~~~~~~~  230 (434)
T 2oit_A          153 IDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L-QEKKVIP  230 (434)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C-CEEEEEC
T ss_pred             EEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C-ccccccc
Confidence            99999998 78888888 9999999999997777777888899999999999999999999999999998 4 4455555


Q ss_pred             cCC-------CCEEEEEEcCCCCEEEE-EeCCCc------EEEEecc
Q 005235          621 CHP-------KDITNVAFHRSYPLFAS-CSDDCT------AYVFHGM  653 (707)
Q Consensus       621 ~h~-------~~I~~vafspdg~llaS-gs~Dg~------I~Vwd~~  653 (707)
                      .|.       ..|.+++|++++.++++ ++.||.      +++|++.
T Consensus       231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence            442       37999999998887754 334443      8999765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.77  E-value=3e-17  Score=172.45  Aligned_cols=218  Identities=9%  Similarity=0.055  Sum_probs=162.4

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCC------cEEEEEEccCCCccEEEEE------------eCCeEEEEECCCC
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGE------AIQYVAWNPLPELPVLAVS------------VGQDVLILNTGLG  450 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~------~V~~v~~spdg~~~lla~s------------~d~~V~lwd~~~~  450 (707)
                      .++++++.++.|.+||+.+++.+..+....      .+.+++|+|+|. .++++.            .++.|.+|++.++
T Consensus        47 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~  125 (337)
T 1pby_B           47 IAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETL  125 (337)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTT
T ss_pred             EEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCC
Confidence            456677788999999999999988887643      678999999994 455554            3577777776543


Q ss_pred             CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc
Q 005235          451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL  530 (707)
Q Consensus       451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~  530 (707)
                      .                                   ..........+.+++|+|+|++|+++  ++   .|.+||+.++.
T Consensus       126 ~-----------------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~--~~---~i~~~d~~~~~  165 (337)
T 1pby_B          126 S-----------------------------------RRKAFEAPRQITMLAWARDGSKLYGL--GR---DLHVMDPEAGT  165 (337)
T ss_dssp             E-----------------------------------EEEEEECCSSCCCEEECTTSSCEEEE--SS---SEEEEETTTTE
T ss_pred             c-----------------------------------EEEEEeCCCCcceeEECCCCCEEEEe--CC---eEEEEECCCCc
Confidence            1                                   11122234567889999999988887  34   89999999887


Q ss_pred             eeeeeeccCCCeEEEEEeCCCCEEEEEe--CC-----------------------eEEEEECCCCeEE-EEEeCCCCCeE
Q 005235          531 SHRIPFKLHGLPVSSVFHPTRSIFFVST--KK-----------------------NIRVYDLLKQRLI-KKLETGLKEVS  584 (707)
Q Consensus       531 ~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg-----------------------~I~iwDl~~~~~~-~~l~~~~~~I~  584 (707)
                      .. ..+........+.|+|++..++++.  ++                       .|.+||+.+++.. ..+..+...+.
T Consensus       166 ~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  244 (337)
T 1pby_B          166 LV-EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF  244 (337)
T ss_dssp             EE-EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred             Ee-eeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence            66 5552221112337899988776554  22                       4789999998764 23445556788


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          585 SIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       585 sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +++|+|+|++|+++  ++.|.+||+.++ +....+..+ ..+.+++|+|++++|++++.++.|.+|+.
T Consensus       245 ~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          245 STAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             eEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            99999999999988  689999999876 666666543 45789999999999988899999999954

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=6.3e-18  Score=187.24  Aligned_cols=199  Identities=10%  Similarity=0.005  Sum_probs=149.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC----------cee-----eeeeccCCCeEEEEEeCCCCEEE---
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK----------LSH-----RIPFKLHGLPVSSVFHPTRSIFF---  555 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~----------~~~-----~~~~~~~~~V~~v~fspd~~~l~---  555 (707)
                      ...+..+++++++.++++++.++    ++||+....          ...     ...+.+.+.|.+++|+|++.+|+   
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~  111 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG----LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACM  111 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE----EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE----EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEE
Confidence            34688999999999999998754    778764311          000     01124567899999999999999   


Q ss_pred             -EEe-CCeEEEEECCCC--------e---EEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235          556 -VST-KKNIRVYDLLKQ--------R---LIKKLETGLKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       556 -v~s-dg~I~iwDl~~~--------~---~~~~l~~~~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                       +++ |+.|+|||+.++        +   .+..+.+|...|.+++|+|+ +.+|++|+.||.|++||++++ .......+
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~~~~  190 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCATLP  190 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEEEEC
T ss_pred             eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceeeccC
Confidence             455 899999998654        2   24555678889999999998 799999999999999999977 55556667


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCC---CCCeeEEEEcCCCCEEEEE-e
Q 005235          622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSN---GRGVMDCKFHPRQPWLFTA-G  697 (707)
Q Consensus       622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~---~~gV~~l~fspdg~~L~s~-g  697 (707)
                      |...|++++|+|+|.+||+|+.||+|++||.+       ..   ....+..|....   ...|.+++|++++.++++. +
T Consensus       191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-------~~---~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~  260 (434)
T 2oit_A          191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-------LQ---EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA  260 (434)
T ss_dssp             GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-------CC---EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-------Cc---ccccccCCcccCCCCceeEEEEEEecCceEEEEEcc
Confidence            88999999999999999999999999999543       11   133444432210   1239999999998887553 4


Q ss_pred             CCCc------EEEEeC
Q 005235          698 ADSV------IRLYCH  707 (707)
Q Consensus       698 ~Dg~------IrlWdl  707 (707)
                      .||.      +++|++
T Consensus       261 ~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          261 ADGTLETSPDVVMALL  276 (434)
T ss_dssp             TTCCSSSCCEEEEEEC
T ss_pred             CCCccCCCCceEEEEe
Confidence            4543      889875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=7.5e-16  Score=163.84  Aligned_cols=240  Identities=10%  Similarity=0.089  Sum_probs=159.5

Q ss_pred             CCcEEEEEe--CCCcEEEEeCCCCeE--EEEEe-cCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccc
Q 005235          387 ACYLEYKGS--TDGTVRIWEVESGRC--LRVLE-IGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       387 ~~~~l~sgs--~DgtVrIWd~~tg~~--l~~l~-~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      ++.+++++.  .++.|++|++.++..  +..+. ....+.+++|+|+|. .|++++ .++.|.+|++.......      
T Consensus        50 dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~------  122 (347)
T 3hfq_A           50 KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALT------  122 (347)
T ss_dssp             TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEE------
T ss_pred             CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCee------
Confidence            445444433  268999999987763  33322 367889999999994 566666 57899999975321100      


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECC-CCceee-eee--
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS-KKLSHR-IPF--  536 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~-~~~~~~-~~~--  536 (707)
                                     .+........... ...+...+.+++|+|+|+.+++...++   .|.+|++. .+.... ..+  
T Consensus       123 ---------------~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~l~v~~~~~~---~v~~~~~~~~g~~~~~~~~~~  183 (347)
T 3hfq_A          123 ---------------LTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNRLAVIDLGSD---KVYVYNVSDAGQLSEQSVLTM  183 (347)
T ss_dssp             ---------------EEEEEECCCCCSS-TTCSSCCEEEEEECTTSCEEEEETTTT---EEEEEEECTTSCEEEEEEEEC
T ss_pred             ---------------ecceeecCCCCCC-ccccCCCceEEEECCCCcEEEEeCCCC---EEEEEEECCCCcEEEeeeEEc
Confidence                           0000000000000 001234588999999999555555555   99999998 443321 122  


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--CeE--EEEEeCCC------CCeEEEEEcCCCCEE-EEEECCCc
Q 005235          537 KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--QRL--IKKLETGL------KEVSSIAIHPAGDNL-IVGSREGK  603 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~~~--~~~l~~~~------~~I~sl~~spdg~~L-~sGs~Dg~  603 (707)
                      .....+..++|+|+|++|++++  ++.|.+|++..  ++.  +..+....      ..+.+++|+|+|++| +++..++.
T Consensus       184 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~  263 (347)
T 3hfq_A          184 EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT  263 (347)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred             CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence            3344678899999999887765  68999999874  543  33333322      348899999999987 45566899


Q ss_pred             EEEEECCCCC--cceEEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEec
Q 005235          604 LCWFDMDLSS--KPYRVLKCHPKDITNVAFHRSYPLFASCSD-DCTAYVFHG  652 (707)
Q Consensus       604 I~vwDl~~~~--~~~~~l~~h~~~I~~vafspdg~llaSgs~-Dg~I~Vwd~  652 (707)
                      |.+|++....  ..+..+..+...+.+++|+|+|++|++++. ++.|.+|++
T Consensus       264 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          264 LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            9999997322  445566666677899999999998877765 589999965

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=5.3e-16  Score=166.14  Aligned_cols=242  Identities=11%  Similarity=0.124  Sum_probs=160.0

Q ss_pred             cCCCCcEEEEEeCC----CcEEEEeCCC--CeE--EEEEec-CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCch
Q 005235          384 YPVACYLEYKGSTD----GTVRIWEVES--GRC--LRVLEI-GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEE  453 (707)
Q Consensus       384 fp~~~~~l~sgs~D----gtVrIWd~~t--g~~--l~~l~~-~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~  453 (707)
                      |..++.+||+++.+    +.|.+|++..  |..  +..... ...+..+++  ++. .+++++ .++.|.+|++......
T Consensus        57 ~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~~~~~~~g~~  133 (361)
T 3scy_A           57 PSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITVFPIGQDGAL  133 (361)
T ss_dssp             ECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEEEEBCTTSCB
T ss_pred             ECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEEEEeCCCCcC
Confidence            34455678888775    8999998865  543  333332 456788888  663 455555 5789999998653211


Q ss_pred             hcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC-CCCccEEEEEECCCCce-
Q 005235          454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLS-  531 (707)
Q Consensus       454 ~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~-  531 (707)
                      ..                    ........+........+...+.+++|+|+|++|++++. ++   .|.+|++..... 
T Consensus       134 ~~--------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---~v~v~~~~~~~~~  190 (361)
T 3scy_A          134 LP--------------------ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD---QIHKFNINPNANA  190 (361)
T ss_dssp             CS--------------------CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT---EEEEEEECTTCCT
T ss_pred             cc--------------------cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC---EEEEEEEcCCCCc
Confidence            00                    000000000000001123445788999999998877664 44   999999875431 


Q ss_pred             ------------eeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeE--EEEEeC---CCCCeEEEEEcCCC
Q 005235          532 ------------HRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRL--IKKLET---GLKEVSSIAIHPAG  592 (707)
Q Consensus       532 ------------~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~--~~~l~~---~~~~I~sl~~spdg  592 (707)
                                  ....+.....+..++|+|+++++++++  ++.|.+|++.++++  +..+..   +...+.+++|+|+|
T Consensus       191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg  270 (361)
T 3scy_A          191 DNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG  270 (361)
T ss_dssp             TTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS
T ss_pred             ccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC
Confidence                        102225556788999999999888876  79999999987754  333332   23457899999999


Q ss_pred             CEEEEEECC--CcEEEEECCC--CC-cceEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q 005235          593 DNLIVGSRE--GKLCWFDMDL--SS-KPYRVLKCHPKDITNVAFHRSYPLFASCS-DDCTAYVFHG  652 (707)
Q Consensus       593 ~~L~sGs~D--g~I~vwDl~~--~~-~~~~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~  652 (707)
                      ++|+++..+  +.|.+|+++.  +. ..+..+.. ...+++++|+|+|++|++++ .++.|.+|.+
T Consensus       271 ~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          271 KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            999776654  8899999963  21 23444444 45688999999999888777 6789999855

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=6.3e-18  Score=198.55  Aligned_cols=279  Identities=11%  Similarity=0.090  Sum_probs=181.8

Q ss_pred             cEEEEEeC---------CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          389 YLEYKGST---------DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       389 ~~l~sgs~---------DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      .+|+.++.         +++|++||+.+|+++........+.+++|||||.  .++.+.++.|++|++.++......   
T Consensus        72 ~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~--~la~~~~~~i~~~~~~~g~~~~l~---  146 (719)
T 1z68_A           72 QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGS--KLAYVYQNNIYLKQRPGDPPFQIT---  146 (719)
T ss_dssp             SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTT--CEEEEETTEEEEESSTTSCCEECC---
T ss_pred             CeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCC--EEEEEECCeEEEEeCCCCCcEEEe---
Confidence            36666554         7899999999998732122346789999999993  455557899999998765331000   


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCC---------CeEEEEEcCCCCEEEEEeCCC--------------
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK---------MVSSVEWHRRGDYLSTVMPAG--------------  516 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~---------~V~~v~~sp~g~~lat~s~dg--------------  516 (707)
                                            ..+....+..++..         ...+++|||+|++|++++.+.              
T Consensus       147 ----------------------~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~  204 (719)
T 1z68_A          147 ----------------------FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE  204 (719)
T ss_dssp             ----------------------CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS
T ss_pred             ----------------------cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence                                  00000001123322         236899999999999988652              


Q ss_pred             -----------------CccEEEEEECCCCcee---ee----ee-ccCCCeEEEEEeCCCCEEEEEeC-----CeEEEEE
Q 005235          517 -----------------ESRAIFMHQLSKKLSH---RI----PF-KLHGLPVSSVFHPTRSIFFVSTK-----KNIRVYD  566 (707)
Q Consensus       517 -----------------~~~~V~Iwdl~~~~~~---~~----~~-~~~~~V~~v~fspd~~~l~v~sd-----g~I~iwD  566 (707)
                                       ....|.+||+.++...   ..    .+ .+...+.+++|+|++.+++++.+     ..|.+||
T Consensus       205 ~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          205 QYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             CCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence                             1237889999887641   01    12 46678899999999877776542     3488999


Q ss_pred             ----CCCCeEEEEE----eCCCCCeE-----EEEEcCCCCEEEE--EECCC--cEEEEECCCCCcceEEeecCCCCEEEE
Q 005235          567 ----LLKQRLIKKL----ETGLKEVS-----SIAIHPAGDNLIV--GSREG--KLCWFDMDLSSKPYRVLKCHPKDITNV  629 (707)
Q Consensus       567 ----l~~~~~~~~l----~~~~~~I~-----sl~~spdg~~L~s--Gs~Dg--~I~vwDl~~~~~~~~~l~~h~~~I~~v  629 (707)
                          +.++++...+    ..+..++.     +++|+|+|+.|+.  +..+|  .|.+||+..+ . ...+..+...+..+
T Consensus       285 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-~-~~~lt~~~~~v~~~  362 (719)
T 1z68_A          285 FREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-N-AIQITSGKWEAINI  362 (719)
T ss_dssp             ECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-T-CEECSCSSSCEEEE
T ss_pred             ccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-c-eEecccCceEEEEE
Confidence                8777655444    35666776     8899999996654  44555  4677777654 3 56677677778888


Q ss_pred             EEcCCCCEEEEEeCC-----CcEEEEecccccCCCCCCcccceEEee----CCCCCCCCCeeEEEEcCCCCEEEE-EeCC
Q 005235          630 AFHRSYPLFASCSDD-----CTAYVFHGMVYSDLNQNPLIVPLEILR----GHTSSNGRGVMDCKFHPRQPWLFT-AGAD  699 (707)
Q Consensus       630 afspdg~llaSgs~D-----g~I~Vwd~~~~~Dl~~~~~~~pl~~l~----gh~~~~~~gV~~l~fspdg~~L~s-~g~D  699 (707)
                      .++ ++..|+..+.+     +.++||.+..    ..+..  ....+.    +|...    +..+.|+|++++|+. ++.+
T Consensus       363 ~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~----~~g~~--~~~~l~~~~~~~~~~----~~~~~~s~dg~~l~~~~s~~  431 (719)
T 1z68_A          363 FRV-TQDSLFYSSNEFEEYPGRRNIYRISI----GSYPP--SKKCVTCHLRKERCQ----YYTASFSDYAKYYALVCYGP  431 (719)
T ss_dssp             EEE-CSSEEEEEESCGGGCTTCBEEEEEEC----SSSSC--CEEESSTTTTTTTBC----BEEEEECGGGSSEEEEECCB
T ss_pred             EEE-eCCEEEEEEecCCCCCceEEEEEEeC----CCCCC--CceeccCccCCCCCc----eEEEEECCCCCEEEEEcCCC
Confidence            888 77766665554     8899997642    11110  012222    24433    889999999987764 4333


Q ss_pred             --CcEEEEeC
Q 005235          700 --SVIRLYCH  707 (707)
Q Consensus       700 --g~IrlWdl  707 (707)
                        ..+.+|++
T Consensus       432 ~~p~~~l~d~  441 (719)
T 1z68_A          432 GIPISTLHDG  441 (719)
T ss_dssp             SSCEEEEECS
T ss_pred             CCCeEEEEEC
Confidence              35677763

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=1.6e-16  Score=171.41  Aligned_cols=276  Identities=12%  Similarity=0.068  Sum_probs=175.1

Q ss_pred             cCCCCcEEEEEeC-CCc--EEEEeCCCCeEEEEEecC-CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          384 YPVACYLEYKGST-DGT--VRIWEVESGRCLRVLEIG-EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       384 fp~~~~~l~sgs~-Dgt--VrIWd~~tg~~l~~l~~~-~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      |+.++..|+.++. +|.  |.+||+.+|+........ ..+.+++|+|+|. .|+.++.++.|.+|++.++...      
T Consensus        43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~~~------  115 (388)
T 3pe7_A           43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD-ALFYVKDGRNLMRVDLATLEEN------  115 (388)
T ss_dssp             BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS-EEEEEETTTEEEEEETTTCCEE------
T ss_pred             CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC-EEEEEeCCCeEEEEECCCCcce------
Confidence            4445555665555 774  888899999887655553 3344678999994 6777777889999998775321      


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEE--EEcCCCCEEEEEeCC-------------------CCc
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSV--EWHRRGDYLSTVMPA-------------------GES  518 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v--~~sp~g~~lat~s~d-------------------g~~  518 (707)
                                        .+          ...+...+...  .++++|.+++....+                   +..
T Consensus       116 ------------------~~----------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (388)
T 3pe7_A          116 ------------------VV----------YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC  167 (388)
T ss_dssp             ------------------EE----------EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred             ------------------ee----------eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence                              11          11223333333  348889888754311                   123


Q ss_pred             cEEEEEECCCCceeeeeeccCCCeEEEEEeC-CCCEEEEEeC-------CeEEEEECCCCeEEEEEeCCC--CCeEEEEE
Q 005235          519 RAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP-TRSIFFVSTK-------KNIRVYDLLKQRLIKKLETGL--KEVSSIAI  588 (707)
Q Consensus       519 ~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp-d~~~l~v~sd-------g~I~iwDl~~~~~~~~l~~~~--~~I~sl~~  588 (707)
                      ..|.+||+.++... ....+...+..++|+| ++..|+.+..       ..|.++|+..+.. ..+..+.  ..+..++|
T Consensus       168 ~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~  245 (388)
T 3pe7_A          168 CRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFW  245 (388)
T ss_dssp             EEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEE
T ss_pred             ceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceE
Confidence            58999999988654 3336677889999999 9998877652       2788888876543 3444443  25788999


Q ss_pred             cCCCCEEEEEECC-C----cEEEEECCCCCc-ceEEeecCCCC---EEEEEEcCCCCEEEEE---------eCCCcEEEE
Q 005235          589 HPAGDNLIVGSRE-G----KLCWFDMDLSSK-PYRVLKCHPKD---ITNVAFHRSYPLFASC---------SDDCTAYVF  650 (707)
Q Consensus       589 spdg~~L~sGs~D-g----~I~vwDl~~~~~-~~~~l~~h~~~---I~~vafspdg~llaSg---------s~Dg~I~Vw  650 (707)
                      +|+|+.|+..+.. +    .|++||+.++.. .+..+.++...   ...++|+|+|+.|+..         ..+..|++|
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~  325 (388)
T 3pe7_A          246 VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF  325 (388)
T ss_dssp             CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred             CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence            9999987665442 2    399999987732 22222221000   1123799999977743         446689999


Q ss_pred             ecccccCCCCCCcccceEEeeCCCCC-------CCCCeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235          651 HGMVYSDLNQNPLIVPLEILRGHTSS-------NGRGVMDCKFHPRQPWLFTAG-ADSVIRLYC  706 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl~~l~gh~~~-------~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWd  706 (707)
                      +.      .++.    +..+..|...       ....+.+++|+|+|++|+.++ .+|...||.
T Consensus       326 d~------~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~  379 (388)
T 3pe7_A          326 NM------KNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL  379 (388)
T ss_dssp             ET------TTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             ec------cCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence            54      3332    3445555430       000178889999999887665 577777774

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=3.2e-15  Score=176.60  Aligned_cols=224  Identities=15%  Similarity=0.070  Sum_probs=153.9

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEecC------CcEEEEEEccCCCccEEEEEeC---------CeEEEEECCCC
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLEIG------EAIQYVAWNPLPELPVLAVSVG---------QDVLILNTGLG  450 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~------~~V~~v~~spdg~~~lla~s~d---------~~V~lwd~~~~  450 (707)
                      .++.+++++  ||+|++|++.+|++...+...      .....++|||||. .|+.++.+         +.+.+||+.++
T Consensus        26 ~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~~~~~~~~d~~~~  102 (740)
T 4a5s_A           26 SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNKR  102 (740)
T ss_dssp             SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEEccceEEEEEECCCC
Confidence            334578876  999999999999988777661      1234589999994 55555554         34445555443


Q ss_pred             CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc
Q 005235          451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL  530 (707)
Q Consensus       451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~  530 (707)
                                                         ....+..|...+..++|||+|+.||.+. ++   .|.+|++.++.
T Consensus       103 -----------------------------------~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~---~i~~~~~~~~~  143 (740)
T 4a5s_A          103 -----------------------------------QLITEERIPNNTQWVTWSPVGHKLAYVW-NN---DIYVKIEPNLP  143 (740)
T ss_dssp             -----------------------------------EECCSSCCCTTEEEEEECSSTTCEEEEE-TT---EEEEESSTTSC
T ss_pred             -----------------------------------cEEEcccCCCcceeeEECCCCCEEEEEE-CC---eEEEEECCCCc
Confidence                                               3333445677899999999999999986 34   89999998877


Q ss_pred             eeeeee-ccCCCe-----------------EEEEEeCCCCEEEEEe-C-C------------------------------
Q 005235          531 SHRIPF-KLHGLP-----------------VSSVFHPTRSIFFVST-K-K------------------------------  560 (707)
Q Consensus       531 ~~~~~~-~~~~~V-----------------~~v~fspd~~~l~v~s-d-g------------------------------  560 (707)
                      ....++ ++...+                 .++.|||||+.|+.++ | +                              
T Consensus       144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~  223 (740)
T 4a5s_A          144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA  223 (740)
T ss_dssp             CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred             eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence            542233 332222                 3589999999988764 2 2                              


Q ss_pred             -----eEEEEECCC---Ce--EEEEEeC------CCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCC-----cc
Q 005235          561 -----NIRVYDLLK---QR--LIKKLET------GLKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLSS-----KP  615 (707)
Q Consensus       561 -----~I~iwDl~~---~~--~~~~l~~------~~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~~-----~~  615 (707)
                           .|++||+.+   ++  ....+..      +...+..++|+|+|+.++.....    ..|.+||+.++.     ..
T Consensus       224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~  303 (740)
T 4a5s_A          224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV  303 (740)
T ss_dssp             CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred             cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence                 588899988   72  2334443      66779999999999977665433    369999998874     01


Q ss_pred             eEEe--ecCCCCEE-----EEEEcCCCCEEE-EEe-CCCc--EEEEe
Q 005235          616 YRVL--KCHPKDIT-----NVAFHRSYPLFA-SCS-DDCT--AYVFH  651 (707)
Q Consensus       616 ~~~l--~~h~~~I~-----~vafspdg~lla-Sgs-~Dg~--I~Vwd  651 (707)
                      ...+  ..|...|.     .++|+|||+.|+ ..+ .+|.  |++|+
T Consensus       304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~  350 (740)
T 4a5s_A          304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ  350 (740)
T ss_dssp             GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence            1222  45665554     789999999776 665 4554  55553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.69  E-value=1.2e-15  Score=164.33  Aligned_cols=290  Identities=10%  Similarity=0.036  Sum_probs=173.1

Q ss_pred             cCCCCcEE-EEEeCC--CcEEEEeCCCCeEEEEEecCCcEE-EEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc-c
Q 005235          384 YPVACYLE-YKGSTD--GTVRIWEVESGRCLRVLEIGEAIQ-YVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR-V  458 (707)
Q Consensus       384 fp~~~~~l-~sgs~D--gtVrIWd~~tg~~l~~l~~~~~V~-~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~-~  458 (707)
                      |+.++..+ ++...+  ..|.+|++.+++..........+. ++.|+|+| ..|+.++.++.|.+|++.++....... .
T Consensus        43 ~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~~~~  121 (396)
T 3c5m_A           43 FTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLEEQVIYTVD  121 (396)
T ss_dssp             BCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             CCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCCcEEEEecc
Confidence            34445554 444433  368888999888654433333333 47899999 467777888899999987764321100 0


Q ss_pred             cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC--CCCccEEEEEECCCCceeeeee
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP--AGESRAIFMHQLSKKLSHRIPF  536 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~--dg~~~~V~Iwdl~~~~~~~~~~  536 (707)
                      .......-.++.........+|                ...+.|+|+|++++.+..  ......|.+||+.++... ...
T Consensus       122 ~~~~~~g~~l~~~~~~~~~~~~----------------~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~~~  184 (396)
T 3c5m_A          122 EEWKGYGTWVANSDCTKLVGIE----------------ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE-VIH  184 (396)
T ss_dssp             TTEEEEEEEEECTTSSEEEEEE----------------EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE-EEE
T ss_pred             cccCCCCCEEEeccCCcccccc----------------ccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE-eec
Confidence            0000000000111111111111                012457888887766531  112348999999987764 334


Q ss_pred             ccCCCeEEEEEeC-CCCEEEEEe-C------CeEEEEECCCCeEEEEEeCC--CCCeEEEEEcCCCCEEEEEECC-----
Q 005235          537 KLHGLPVSSVFHP-TRSIFFVST-K------KNIRVYDLLKQRLIKKLETG--LKEVSSIAIHPAGDNLIVGSRE-----  601 (707)
Q Consensus       537 ~~~~~V~~v~fsp-d~~~l~v~s-d------g~I~iwDl~~~~~~~~l~~~--~~~I~sl~~spdg~~L~sGs~D-----  601 (707)
                      .+...+..+.|+| ++..|+.++ +      ..|.+||+..++.. .+..+  ...+..++|+|+|+.|+.++.+     
T Consensus       185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (396)
T 3c5m_A          185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD  263 (396)
T ss_dssp             EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred             cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence            6677889999999 788766654 2      46899998766433 33333  2357889999999988877654     


Q ss_pred             CcEEEEECCCCCcceEEeecCCCCEEEEEEcC-CCCEEEEEe----------------CCCcEEEEecccccCCCCCCcc
Q 005235          602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPLFASCS----------------DDCTAYVFHGMVYSDLNQNPLI  664 (707)
Q Consensus       602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp-dg~llaSgs----------------~Dg~I~Vwd~~~~~Dl~~~~~~  664 (707)
                      +.|++||+.++ .... +.... ... ++|+| +|++|++++                .++.|++|+.      .++.. 
T Consensus       264 ~~l~~~d~~~g-~~~~-l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~------~~~~~-  332 (396)
T 3c5m_A          264 RVIYKANPETL-ENEE-VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT------KAKSA-  332 (396)
T ss_dssp             EEEEEECTTTC-CEEE-EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET------TTTBC-
T ss_pred             ceEEEEECCCC-CeEE-eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec------ccCce-
Confidence            44999999876 3322 22222 233 89999 999888765                3467999954      33322 


Q ss_pred             cceEEeeCCCCC-------CCCCeeEEEEcCCCCEEEEEeC-CCcEEEEe
Q 005235          665 VPLEILRGHTSS-------NGRGVMDCKFHPRQPWLFTAGA-DSVIRLYC  706 (707)
Q Consensus       665 ~pl~~l~gh~~~-------~~~gV~~l~fspdg~~L~s~g~-Dg~IrlWd  706 (707)
                         ..+..+...       ....+..++|+|+|.+|+.++. ++...||.
T Consensus       333 ---~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          333 ---QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             ---CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             ---EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence               234443321       0001566899999998877664 56666664

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=6.4e-15  Score=158.64  Aligned_cols=235  Identities=10%  Similarity=0.080  Sum_probs=158.8

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCC-CCeEEEEEec--CCcEEEEEEccCCCcc-EEEEE--------------eCCeEEEE
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVE-SGRCLRVLEI--GEAIQYVAWNPLPELP-VLAVS--------------VGQDVLIL  445 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~-tg~~l~~l~~--~~~V~~v~~spdg~~~-lla~s--------------~d~~V~lw  445 (707)
                      |..++.++|+++.+ +|.+|++. +|++......  .+.+.+++|+|+|. . ++.++              .++.+.+|
T Consensus        47 ~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~g~v~v~  124 (365)
T 1jof_A           47 FDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTR-AIFLLAAKQPPYAVYANPFYKFAGYGNVF  124 (365)
T ss_dssp             ECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCE-EEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred             ECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCC-EEEEEEecCCcceeccceeecCCceEEEE
Confidence            34455688888887 99999997 8887654443  24467799999993 3 33222              46677777


Q ss_pred             ECCC-CCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235          446 NTGL-GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH  524 (707)
Q Consensus       446 d~~~-~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw  524 (707)
                      ++.. +...                     ..+..+         ...+...+.+++|+|+|++|+++...  ...|.+|
T Consensus       125 ~~~~~g~~~---------------------~~~~~~---------~~~~~~~~~~~~~spdG~~l~~~~~~--~~~v~~~  172 (365)
T 1jof_A          125 SVSETGKLE---------------------KNVQNY---------EYQENTGIHGMVFDPTETYLYSADLT--ANKLWTH  172 (365)
T ss_dssp             EECTTCCEE---------------------EEEEEE---------ECCTTCCEEEEEECTTSSEEEEEETT--TTEEEEE
T ss_pred             ccCCCCcCc---------------------ceEeeE---------EeCCCCcceEEEECCCCCEEEEEcCC--CCEEEEE
Confidence            7642 2100                     000000         01245678999999999998877642  2399999


Q ss_pred             ECC-CCceee-eeec---cCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC--CCeEE---EEEeC---C----CC----
Q 005235          525 QLS-KKLSHR-IPFK---LHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL--KQRLI---KKLET---G----LK----  581 (707)
Q Consensus       525 dl~-~~~~~~-~~~~---~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~--~~~~~---~~l~~---~----~~----  581 (707)
                      ++. ++.... ..+.   +...+..++|+|+|++|++++  ++.|.+|++.  ++++.   ..+..   +    ..    
T Consensus       173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  252 (365)
T 1jof_A          173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK  252 (365)
T ss_dssp             EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred             EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccc
Confidence            998 565431 1222   356789999999999998877  5899999865  56543   22321   1    11    


Q ss_pred             --CeEEEE-EcCCCCEEEEEECCC------cEEEEECCCCCcceE---EeecCCCCEEEEEEcC---CCCEEEEEeCC-C
Q 005235          582 --EVSSIA-IHPAGDNLIVGSREG------KLCWFDMDLSSKPYR---VLKCHPKDITNVAFHR---SYPLFASCSDD-C  645 (707)
Q Consensus       582 --~I~sl~-~spdg~~L~sGs~Dg------~I~vwDl~~~~~~~~---~l~~h~~~I~~vafsp---dg~llaSgs~D-g  645 (707)
                        .+.+++ |+|+|++|++++.+.      .|.+|+++...+...   .+..+...+..++|+|   +|++|++++.+ +
T Consensus       253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~  332 (365)
T 1jof_A          253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred             ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence              588999 999999988776432      899999963224332   2334555677899999   89999988864 8


Q ss_pred             cEEEEec
Q 005235          646 TAYVFHG  652 (707)
Q Consensus       646 ~I~Vwd~  652 (707)
                      +|.||+.
T Consensus       333 ~v~v~~~  339 (365)
T 1jof_A          333 WLEIYRW  339 (365)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            9999965

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=2.5e-15  Score=174.44  Aligned_cols=198  Identities=8%  Similarity=-0.052  Sum_probs=137.8

Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCC-------CCccEEEEEECCC------Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe
Q 005235          493 HFKMVSSVEWHRRGDYLSTVMPA-------GESRAIFMHQLSK------KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST  558 (707)
Q Consensus       493 h~~~V~~v~~sp~g~~lat~s~d-------g~~~~V~Iwdl~~------~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s  558 (707)
                      |...+.+++|+|+|++|++++.+       .....|.+|++.+      +... ... .+...+..++|+|||++|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEE
Confidence            56678899999999999998875       2235899999988      5443 333 4456778899999999998766


Q ss_pred             -C--------CeEEEEECC-CC---eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC--cEEEEECCCCCcceEEeecCC
Q 005235          559 -K--------KNIRVYDLL-KQ---RLIKKLETGLKEVSSIAIHPAGDNLIVGSREG--KLCWFDMDLSSKPYRVLKCHP  623 (707)
Q Consensus       559 -d--------g~I~iwDl~-~~---~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg--~I~vwDl~~~~~~~~~l~~h~  623 (707)
                       +        ..|++||+. ++   +.......+...+.+++|+|+|+++++++.++  .|.+||+.++ ........+.
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~  285 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG-AATQLCRREE  285 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC-CEEESSCCSS
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC-ceeecccccc
Confidence             4        379999998 56   44444444567899999999999888888888  5666666544 3333223222


Q ss_pred             CC--------EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE-EEcCCCCEEE
Q 005235          624 KD--------ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC-KFHPRQPWLF  694 (707)
Q Consensus       624 ~~--------I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l-~fspdg~~L~  694 (707)
                      ..        +.+++|+|++.++++++. +.++||.+.    +..+.    +..+..|...    +..+ +++++.-+++
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d----~~~~~----~~~l~~~~~~----~~~~~s~~~~~~~~~  352 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD----PESGE----LVDAAGPWTE----WAATLTVSGTRAVGV  352 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE----TTTTE----EEECCSSCCE----EEEEEEEETTEEEEE
T ss_pred             cccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE----CCCCc----EEEecCCCCe----EEEEEecCCCEEEEE
Confidence            22        567999999999999999 999999542    22221    4667777554    7666 5544333445


Q ss_pred             EEeCCCcEEEE
Q 005235          695 TAGADSVIRLY  705 (707)
Q Consensus       695 s~g~Dg~IrlW  705 (707)
                      +++.+....||
T Consensus       353 ~~~~~~~~~i~  363 (662)
T 3azo_A          353 AASPRTAYEVV  363 (662)
T ss_dssp             EEETTEEEEEE
T ss_pred             EcCCCCCCEEE
Confidence            55666555555

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.68  E-value=1.2e-14  Score=153.51  Aligned_cols=219  Identities=11%  Similarity=0.024  Sum_probs=145.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCC-------cEEEEEEccCCCccEEEEEeC------------CeEEEEECCCC
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIGE-------AIQYVAWNPLPELPVLAVSVG------------QDVLILNTGLG  450 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~-------~V~~v~~spdg~~~lla~s~d------------~~V~lwd~~~~  450 (707)
                      ++++++.++.|.+||+.+++.+..+....       .+.+++|+|+|. .+++++.+            +.|.+||+.++
T Consensus        57 ~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  135 (349)
T 1jmx_B           57 AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADG  135 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             EEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCc
Confidence            55666788999999999999988887632       278999999994 56666644            77888876543


Q ss_pred             CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc
Q 005235          451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL  530 (707)
Q Consensus       451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~  530 (707)
                      ...                                .......+...+.+++|+|+|+ +++++.     .|.+||+.++.
T Consensus       136 ~~~--------------------------------~~~~~~~~~~~~~~~~~s~dg~-l~~~~~-----~i~~~d~~~~~  177 (349)
T 1jmx_B          136 LEA--------------------------------KPVRTFPMPRQVYLMRAADDGS-LYVAGP-----DIYKMDVKTGK  177 (349)
T ss_dssp             GGB--------------------------------CCSEEEECCSSCCCEEECTTSC-EEEESS-----SEEEECTTTCC
T ss_pred             ccc--------------------------------ceeeeccCCCcccceeECCCCc-EEEccC-----cEEEEeCCCCc
Confidence            110                                0001223444688999999999 555432     59999998887


Q ss_pred             eeeeeeccCC-------------------------CeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEE-EEEeCCCCC
Q 005235          531 SHRIPFKLHG-------------------------LPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLI-KKLETGLKE  582 (707)
Q Consensus       531 ~~~~~~~~~~-------------------------~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~-~~l~~~~~~  582 (707)
                      .. ..+....                         ...++++++++.......  ...+..+|+.+++.. ..+..+...
T Consensus       178 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (349)
T 1jmx_B          178 YT-VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL  256 (349)
T ss_dssp             EE-EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             ee-ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCc
Confidence            65 4442111                         334566666543221111  112223555554321 122334567


Q ss_pred             eEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          583 VSSIAIHP-AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       583 I~sl~~sp-dg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +.+++|+| +|++|+++  ++.|.+||+.++ +.+..+.. ...+.+++|+|++.+|++++.++.|.+||.
T Consensus       257 ~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          257 YFTGLRSPKDPNQIYGV--LNRLAKYDLKQR-KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             EEEEEECSSCTTEEEEE--ESEEEEEETTTT-EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             ceeeEecCCCCCEEEEE--cCeEEEEECccC-eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEec
Confidence            89999999 99999988  889999999876 66666653 345779999999998888888999999954

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=1e-14  Score=154.82  Aligned_cols=239  Identities=10%  Similarity=0.127  Sum_probs=162.2

Q ss_pred             CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC---Ce--EEEEECCCCCchhcccccceeeeccccccc
Q 005235          397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG---QD--VLILNTGLGNEEEQRRVKDLLHVETPTAPD  471 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d---~~--V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~  471 (707)
                      ++.|.+|++.+++... +   ..+.+++|+|||. .|+.++.+   +.  |.+|++.++                     
T Consensus        42 ~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~~~~~~g---------------------   95 (347)
T 2gop_A           42 ENTIVIENLKNNARRF-I---ENATMPRISPDGK-KIAFMRANEEKKVSEIWVADLETL---------------------   95 (347)
T ss_dssp             EEEEEEEETTTCCEEE-E---ESCEEEEECTTSS-EEEEEEEETTTTEEEEEEEETTTT---------------------
T ss_pred             cceEEEEeCCCCceEE-c---ccCCCeEECCCCC-EEEEEEeccCCCcceEEEEECCCC---------------------
Confidence            6789999999887543 3   5688999999994 45555543   33  555554432                     


Q ss_pred             CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC------------------C------CccEEEEEECC
Q 005235          472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA------------------G------ESRAIFMHQLS  527 (707)
Q Consensus       472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d------------------g------~~~~V~Iwdl~  527 (707)
                                    ....+..+.. +.+++|+|+|++|++++.+                  |      ....|.+|++.
T Consensus        96 --------------~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~  160 (347)
T 2gop_A           96 --------------SSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE  160 (347)
T ss_dssp             --------------EEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred             --------------ceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence                          2222223334 8999999999999988743                  1      13589999998


Q ss_pred             CCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-C------C-eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 005235          528 KKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-K------K-NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG  598 (707)
Q Consensus       528 ~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-d------g-~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG  598 (707)
                      ++... ..+ . . .+..++|+|++ +++++. +      . ...||.+.+++. ..+..+ ..+.++  +|+|+.|+.+
T Consensus       161 ~~~~~-~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~  232 (347)
T 2gop_A          161 SEEVI-EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLY  232 (347)
T ss_dssp             TTEEE-EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEE
T ss_pred             CCeEE-eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEE
Confidence            88763 344 4 3 88899999999 777775 3      2 334444435554 344444 555554  9999999887


Q ss_pred             ECC--------CcEEEEECCCCCcceEEeecCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE
Q 005235          599 SRE--------GKLCWFDMDLSSKPYRVLKCHPKDITN-VAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI  669 (707)
Q Consensus       599 s~D--------g~I~vwDl~~~~~~~~~l~~h~~~I~~-vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~  669 (707)
                      +.+        ..|.+||  ++ ........|...+.. ++|+ ++ ++++++.++.++|| +. .     +.    ...
T Consensus       233 ~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~-----g~----~~~  296 (347)
T 2gop_A          233 GKPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-D-----GE----IKP  296 (347)
T ss_dssp             ECCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-S-----SS----EEE
T ss_pred             EccccCCccccceEEEEC--CC-ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-C-----Cc----eEE
Confidence            754        3678888  33 444444556778886 9999 88 99999999999999 74 1     11    233


Q ss_pred             eeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE-EEEe
Q 005235          670 LRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI-RLYC  706 (707)
Q Consensus       670 l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I-rlWd  706 (707)
                      +..+...    |.+++|+|  .++++++.++.. .||.
T Consensus       297 ~~~~~~~----v~~~~~s~--~~~~~~~~~~~~~~l~~  328 (347)
T 2gop_A          297 IAKGRHW----IMGFDVDE--IVVYLKETATRLRELFT  328 (347)
T ss_dssp             EECSSSE----EEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred             EecCCCe----EEeeeeeC--cEEEEEcCCCChHHheE
Confidence            3344444    99999999  688888877765 7774

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.67  E-value=2.6e-15  Score=177.31  Aligned_cols=238  Identities=10%  Similarity=0.041  Sum_probs=163.3

Q ss_pred             cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccC----
Q 005235          419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHF----  494 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~----  494 (707)
                      ...+++|+|+|  .+++.+ +++|.+|++.++....                                  .+.+|.    
T Consensus        18 ~~~~~~w~~dg--~~~~~~-~~~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~   60 (740)
T 4a5s_A           18 KLYSLRWISDH--EYLYKQ-ENNILVFNAEYGNSSV----------------------------------FLENSTFDEF   60 (740)
T ss_dssp             CCCCEEECSSS--EEEEEE-TTEEEEEETTTCCEEE----------------------------------EECTTTTTTC
T ss_pred             cccccEECCCC--cEEEEc-CCcEEEEECCCCceEE----------------------------------EEechhhhhh
Confidence            45689999999  455555 9999999988764311                                  111222    


Q ss_pred             -CCeEEEEEcCCCCEEEEEeCCCC------ccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEeCCeEEEEE
Q 005235          495 -KMVSSVEWHRRGDYLSTVMPAGE------SRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVSTKKNIRVYD  566 (707)
Q Consensus       495 -~~V~~v~~sp~g~~lat~s~dg~------~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~sdg~I~iwD  566 (707)
                       .....++|||+|++|++++.+..      .+.+.+||+.++...  .+ .+.+.+..++|||||+.|+.+.++.|++||
T Consensus        61 ~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~--~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~  138 (740)
T 4a5s_A           61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI--TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKI  138 (740)
T ss_dssp             CSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC--CSSCCCTTEEEEEECSSTTCEEEEETTEEEEES
T ss_pred             cccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE--EcccCCCcceeeEECCCCCEEEEEECCeEEEEE
Confidence             22345899999999999886531      137789999998764  45 677889999999999999999999999999


Q ss_pred             CCCCeEEEEEe-CCCCCe-----------------EEEEEcCCCCEEEEEECCC--------------------------
Q 005235          567 LLKQRLIKKLE-TGLKEV-----------------SSIAIHPAGDNLIVGSREG--------------------------  602 (707)
Q Consensus       567 l~~~~~~~~l~-~~~~~I-----------------~sl~~spdg~~L~sGs~Dg--------------------------  602 (707)
                      +.++...+... ++...+                 .++.|||||+.||.++.|.                          
T Consensus       139 ~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y  218 (740)
T 4a5s_A          139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY  218 (740)
T ss_dssp             STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred             CCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence            98876543211 222222                 3489999999999886432                          


Q ss_pred             ----------cEEEEECCC---CCc-ceEEee------cCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEecccccCC
Q 005235          603 ----------KLCWFDMDL---SSK-PYRVLK------CHPKDITNVAFHRSYPLFASCSD----DCTAYVFHGMVYSDL  658 (707)
Q Consensus       603 ----------~I~vwDl~~---~~~-~~~~l~------~h~~~I~~vafspdg~llaSgs~----Dg~I~Vwd~~~~~Dl  658 (707)
                                .|.+||+.+   +.. ....+.      +|...+..++|+|+|++++....    +..|.+|++.     
T Consensus       219 p~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~-----  293 (740)
T 4a5s_A          219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD-----  293 (740)
T ss_dssp             CBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE-----
T ss_pred             CCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC-----
Confidence                      478899987   521 233343      37778999999999997665543    3378999653     


Q ss_pred             CCCC----cccceEEe--eCCCCCCCCCee-----EEEEcCCCCEEE-EEe-CCC--cEEEEe
Q 005235          659 NQNP----LIVPLEIL--RGHTSSNGRGVM-----DCKFHPRQPWLF-TAG-ADS--VIRLYC  706 (707)
Q Consensus       659 ~~~~----~~~pl~~l--~gh~~~~~~gV~-----~l~fspdg~~L~-s~g-~Dg--~IrlWd  706 (707)
                       ++.    +.. +..+  .+|...    |.     .++|+|||++|+ ..+ .+|  .|.+|+
T Consensus       294 -tg~~~~~~~~-~~~l~~~~~~~~----v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~  350 (740)
T 4a5s_A          294 -ESSGRWNCLV-ARQHIEMSTTGW----VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ  350 (740)
T ss_dssp             -TTTTEEEECG-GGCEEEECSSSC----SSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             -CCccccceeE-EEEeeeccCCce----EccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence             332    110 1122  445543    43     789999999887 665 344  466665

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=2.7e-13  Score=139.96  Aligned_cols=238  Identities=12%  Similarity=0.126  Sum_probs=166.5

Q ss_pred             CcEEEEEEccCCCccEEEE-EeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          418 EAIQYVAWNPLPELPVLAV-SVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~-s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ..+.+|++++++  .++++ ..++.|.+|++... .                        +..+....    ....+...
T Consensus        30 ~~p~~v~~~~~g--~l~v~~~~~~~i~~~d~~g~-~------------------------~~~~~~~~----~~~~~~~~   78 (286)
T 1q7f_A           30 TEPSGVAVNAQN--DIIVADTNNHRIQIFDKEGR-F------------------------KFQFGECG----KRDSQLLY   78 (286)
T ss_dssp             SCEEEEEECTTC--CEEEEEGGGTEEEEECTTSC-E------------------------EEEECCBS----SSTTCBSS
T ss_pred             CCCceEEECCCC--CEEEEECCCCEEEEECCCCc-E------------------------EEEecccC----CCcccccC
Confidence            468899999998  35555 56788999986521 1                        11111000    00134457


Q ss_pred             eEEEEE-cCCCCEEEEEeC-CCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe
Q 005235          497 VSSVEW-HRRGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR  571 (707)
Q Consensus       497 V~~v~~-sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~  571 (707)
                      +..+++ .++|..+++... ++   .|.+|+. .+... ..+  .....+.+++++|++.++++.. ++.|.+||.. ++
T Consensus        79 p~~i~~~~~~g~l~v~~~~~~~---~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  152 (286)
T 1q7f_A           79 PNRVAVVRNSGDIIVTERSPTH---QIQIYNQ-YGQFV-RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN  152 (286)
T ss_dssp             EEEEEEETTTTEEEEEECGGGC---EEEEECT-TSCEE-EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             ceEEEEEcCCCeEEEEcCCCCC---EEEEECC-CCcEE-EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence            889999 467766666533 45   8999994 44444 455  3446789999999998776665 7899999964 56


Q ss_pred             EEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--CCCEEEEEEcCCCCEEEEEeCCC-c
Q 005235          572 LIKKLE--TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--PKDITNVAFHRSYPLFASCSDDC-T  646 (707)
Q Consensus       572 ~~~~l~--~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--~~~I~~vafspdg~llaSgs~Dg-~  646 (707)
                      .+..+.  .+...+.+|+++|+|.++++.+.++.|.+||.. + ..+..+..+  ...+.+++++++|.++++...++ .
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~  230 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-G-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN  230 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-C-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred             EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-C-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence            666664  344568999999999988888889999999985 3 455566443  36789999999999999988886 9


Q ss_pred             EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |.+|+.      . +..   +..+..+...  ..+.+++|+|+|.++++ +.|++|++|++
T Consensus       231 i~~~~~------~-g~~---~~~~~~~~~~--~~~~~i~~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          231 LTIFTQ------D-GQL---ISALESKVKH--AQCFDVALMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             EEEECT------T-SCE---EEEEEESSCC--SCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             EEEECC------C-CCE---EEEEcccCCC--CcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence            999942      2 222   4445444321  12789999999987776 67999999974

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.63  E-value=6.2e-14  Score=148.78  Aligned_cols=258  Identities=12%  Similarity=0.128  Sum_probs=174.3

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCC-eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe--cc
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQ-DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL--RH  493 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~-~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~--~h  493 (707)
                      -+.|.+|+++|+|  .++++...+ .+.++....... ....          ......++.|.+|+..++......  .+
T Consensus        23 l~~v~~va~d~~G--~l~v~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~i~~~d~~~g~~~~~~~~~~   89 (329)
T 3fvz_A           23 PGQVSGVALDSKN--NLVIFHRGDHVWDGNSFDSKFV-YQQR----------GLGPIEEDTILVIDPNNAEILQSSGKNL   89 (329)
T ss_dssp             CSCEEEEEECTTC--CEEEEECTTCCCCTTSBCTTSC-BSCG----------GGCSCCSCCEEEECTTTCCEEEEECTTT
T ss_pred             cCCceEEEECCCC--CEEEEeCCCCeEEeeccCccee-eccc----------ccccccCCcEEEEECCCCeEEeccCCCc
Confidence            3678999999999  466555443 322221111100 0000          001113567888887655443322  34


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc-eeeeeec----------cCCCeEEEEEeC-CCCEEEEEe--C
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL-SHRIPFK----------LHGLPVSSVFHP-TRSIFFVST--K  559 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~-~~~~~~~----------~~~~V~~v~fsp-d~~~l~v~s--d  559 (707)
                      ...+..|+++++|+.+++...++   .|.+|+..... .. ..+.          +...+..++|+| ++.++++.+  +
T Consensus        90 ~~~p~gia~d~~g~l~v~d~~~~---~v~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~  165 (329)
T 3fvz_A           90 FYLPHGLSIDTDGNYWVTDVALH---QVFKLDPHSKEGPL-LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN  165 (329)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTT---EEEEECTTCSSCCS-EEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred             cCCceEEEECCCCCEEEEECCCC---EEEEEeCCCCeEEE-EEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence            45789999999999888777666   99999987653 22 3331          122688999999 788888774  7


Q ss_pred             CeEEEEECCCCeEEEEEeCC----------CCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEee--cCCCCE
Q 005235          560 KNIRVYDLLKQRLIKKLETG----------LKEVSSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLK--CHPKDI  626 (707)
Q Consensus       560 g~I~iwDl~~~~~~~~l~~~----------~~~I~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h~~~I  626 (707)
                      +.|++|| .++..+..+...          .....+|+++|+ |.++++...+++|.+||..++ +.+..+.  .+...+
T Consensus       166 ~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~  243 (329)
T 3fvz_A          166 SRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNV  243 (329)
T ss_dssp             CEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCE
T ss_pred             CeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCc
Confidence            8999999 567777666422          134899999998 777777778899999999866 6666663  456778


Q ss_pred             EEEEEcCCCCEEEEE-------eCCCcEEEEecccccCCCCCCcccceEEe---eCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235          627 TNVAFHRSYPLFASC-------SDDCTAYVFHGMVYSDLNQNPLIVPLEIL---RGHTSSNGRGVMDCKFHPRQPWLFTA  696 (707)
Q Consensus       627 ~~vafspdg~llaSg-------s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l---~gh~~~~~~gV~~l~fspdg~~L~s~  696 (707)
                      .+++|+| +.++++.       +.+.+|++|+.      .++..   +..+   .++...    +.+|+++|+|.++++.
T Consensus       244 ~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~------~~g~~---~~~~~~~~~~~~~----p~~ia~~~dG~lyvad  309 (329)
T 3fvz_A          244 FAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNF------SSGEI---IDVFKPVRKHFDM----PHDIVASEDGTVYIGD  309 (329)
T ss_dssp             EEEEEET-TEEEEEECCCCTTCSCCCCEEEEET------TTCCE---EEEECCSSSCCSS----EEEEEECTTSEEEEEE
T ss_pred             ceeeecC-CEEEEeCCCEEeccCCCcEEEEEEc------CCCeE---EEEEcCCCCccCC----eeEEEECCCCCEEEEE
Confidence            9999999 4444433       34458999953      34433   4444   344444    8999999999888888


Q ss_pred             eCCCcEEEEeC
Q 005235          697 GADSVIRLYCH  707 (707)
Q Consensus       697 g~Dg~IrlWdl  707 (707)
                      ..+++|++|++
T Consensus       310 ~~~~~I~~~~~  320 (329)
T 3fvz_A          310 AHTNTVWKFTL  320 (329)
T ss_dssp             SSSCCEEEEEE
T ss_pred             CCCCEEEEEeC
Confidence            89999999974

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.62  E-value=2.4e-13  Score=146.52  Aligned_cols=275  Identities=11%  Similarity=0.038  Sum_probs=180.6

Q ss_pred             CCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCCCCch--hccc------
Q 005235          396 TDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGLGNEE--EQRR------  457 (707)
Q Consensus       396 ~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~~~~~--~~~~------  457 (707)
                      .|++|.+||..+++.+..+...... .++|+|++. .++++.          .++.|.+||+.+....  +...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            4789999999999998888775444 999999994 566665          2567999998876432  1100      


Q ss_pred             ccceeeeccc-----ccccC--CCCcEEEEecCCccceEE-eccCCCeEEEEEcCCC-CEEEEEeCCCCccEEEEEECCC
Q 005235          458 VKDLLHVETP-----TAPDD--NMASIVSWLQHDKLDGIR-LRHFKMVSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSK  528 (707)
Q Consensus       458 ~~~v~~~~~~-----~~~~~--~d~~i~iW~~~~~~~~~~-~~h~~~V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~  528 (707)
                      ......+.++     ++++.  .++.|.+|+......... +.+.+ ...+.+.|++ ..+++.+.||   .+.++++..
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg---~~~~v~~~~  182 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDG---GLLTINLGE  182 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTS---SEEEEEECT
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCC---cEEEEEECC
Confidence            0112222332     33332  367899999987755444 44332 2335667765 6778888888   888888765


Q ss_pred             Cceee------eeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--EEEEEeCCC------CC----eEEEEEc
Q 005235          529 KLSHR------IPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--LIKKLETGL------KE----VSSIAIH  589 (707)
Q Consensus       529 ~~~~~------~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--~~~~l~~~~------~~----I~sl~~s  589 (707)
                      .....      ..+........+.++|++..++..+ ++.|.++|+....  .+..+....      .+    ...++|+
T Consensus       183 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~  262 (361)
T 2oiz_A          183 DGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH  262 (361)
T ss_dssp             TSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred             CCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence            22220      0121112222344567777777666 8999999997543  333322110      11    1137899


Q ss_pred             CCCCEEEEEEC-----------CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC
Q 005235          590 PAGDNLIVGSR-----------EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL  658 (707)
Q Consensus       590 pdg~~L~sGs~-----------Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl  658 (707)
                      |++..++++..           .+.|.+||+.+. +.+.++..+.  +.+++|+|+|++|++++. ++|.|||      .
T Consensus       263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D------~  332 (361)
T 2oiz_A          263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD------I  332 (361)
T ss_dssp             TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE------C
T ss_pred             cCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE------C
Confidence            99988877653           347999999987 7888888776  899999999999998887 9999995      4


Q ss_pred             CCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC
Q 005235          659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP  691 (707)
Q Consensus       659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~  691 (707)
                      .++.+ ..+..+..+...    ...++|+|+|.
T Consensus       333 ~t~~l-~~~~~i~~~G~~----P~~~~~~p~G~  360 (361)
T 2oiz_A          333 SQPEP-KLLRTIEGAAEA----SLQVQFHPVGG  360 (361)
T ss_dssp             SSSSC-EEEEEETTSCSS----EEEEEECCCSC
T ss_pred             CCCcc-eeeEEeccCCCC----cEEEEecCCCC
Confidence            44411 135665555443    88999999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.62  E-value=2.2e-14  Score=154.41  Aligned_cols=257  Identities=9%  Similarity=-0.035  Sum_probs=167.0

Q ss_pred             EEEeCCCCeEEEEEec-CCcEEE-----EEEccCCCccEEEEEe-CC--eEEEEECCCCCchhcccccceeeeccccccc
Q 005235          401 RIWEVESGRCLRVLEI-GEAIQY-----VAWNPLPELPVLAVSV-GQ--DVLILNTGLGNEEEQRRVKDLLHVETPTAPD  471 (707)
Q Consensus       401 rIWd~~tg~~l~~l~~-~~~V~~-----v~~spdg~~~lla~s~-d~--~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~  471 (707)
                      ..++..+|..+..+.. ...+..     ++|+|||. .|+.++. ++  .|.+|++.++...                  
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~------------------   73 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVAT------------------   73 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTCEEE------------------
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCCCceE------------------
Confidence            3457778888877766 334555     88999994 5666665 55  3666776554211                  


Q ss_pred             CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE--EEe
Q 005235          472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS--VFH  548 (707)
Q Consensus       472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v--~fs  548 (707)
                                      .....+...+..++|+|+|++|++++.++   .|.+||+.++... ..+ .+.+.+...  .++
T Consensus        74 ----------------~lt~~~~~~~~~~~~spdg~~l~~~~~~~---~l~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~  133 (388)
T 3pe7_A           74 ----------------QLTEGRGDNTFGGFLSPDDDALFYVKDGR---NLMRVDLATLEEN-VVYQVPAEWVGYGTWVAN  133 (388)
T ss_dssp             ----------------ECCCSSCBCSSSCEECTTSSEEEEEETTT---EEEEEETTTCCEE-EEEECCTTEEEEEEEEEC
T ss_pred             ----------------EeeeCCCCCccceEEcCCCCEEEEEeCCC---eEEEEECCCCcce-eeeechhhcccccceeEC
Confidence                            01223444455678999999999999876   9999999998775 444 444444333  358


Q ss_pred             CCCCEEEEEe-----------------------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECC---
Q 005235          549 PTRSIFFVST-----------------------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSRE---  601 (707)
Q Consensus       549 pd~~~l~v~s-----------------------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~D---  601 (707)
                      |++.+++...                       +..|.+||+.+++.. .+..+...+..++|+| +|..|+..+.+   
T Consensus       134 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~  212 (388)
T 3pe7_A          134 SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHD  212 (388)
T ss_dssp             TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTT
T ss_pred             CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCC
Confidence            9999887421                       368999999988654 4444557799999999 99999887764   


Q ss_pred             ---CcEEEEECCCCCcceEEeecCC--CCEEEEEEcCCCCEEEEEeC-CC----cEEEEecccccCCCCCCcccceEEee
Q 005235          602 ---GKLCWFDMDLSSKPYRVLKCHP--KDITNVAFHRSYPLFASCSD-DC----TAYVFHGMVYSDLNQNPLIVPLEILR  671 (707)
Q Consensus       602 ---g~I~vwDl~~~~~~~~~l~~h~--~~I~~vafspdg~llaSgs~-Dg----~I~Vwd~~~~~Dl~~~~~~~pl~~l~  671 (707)
                         ..|.++|+..+  ....+..+.  ..+..++|+|+|+.|+..+. ++    .|++|      |+.++.. ..+..+.
T Consensus       213 ~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~------d~~~g~~-~~l~~~~  283 (388)
T 3pe7_A          213 LVDARMWLINEDGT--NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA------DPETLEN-RQLTSMP  283 (388)
T ss_dssp             TSSCSEEEEETTSC--CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE------CTTTCCE-EEEEEEC
T ss_pred             CCcceEEEEeCCCC--ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE------ecCCCce-EEEEcCC
Confidence               37888887644  344555454  35888999999997765443 22    39999      4444432 1233343


Q ss_pred             CCCCCCCCCeeEEEEcCCCCEEEEE---------eCCCcEEEEeC
Q 005235          672 GHTSSNGRGVMDCKFHPRQPWLFTA---------GADSVIRLYCH  707 (707)
Q Consensus       672 gh~~~~~~gV~~l~fspdg~~L~s~---------g~Dg~IrlWdl  707 (707)
                      ++... ......++|+|+|++|+..         +.+..|.+|++
T Consensus       284 ~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          284 ACSHL-MSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             CEEEE-EECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             Cceee-eecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence            31100 0001123799999988754         45668999985

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=4.5e-13  Score=141.41  Aligned_cols=258  Identities=9%  Similarity=0.061  Sum_probs=171.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEE-EEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLA-VSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla-~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .++..+.++.+++|   .+.....+.. ...+.+++|+|++  .|++ ...++.|.+|++.++..               
T Consensus        19 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g--~l~~~~~~~~~i~~~d~~~~~~---------------   78 (333)
T 2dg1_A           19 SAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQG--QLFLLDVFEGNIFKINPETKEI---------------   78 (333)
T ss_dssp             CSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTS--CEEEEETTTCEEEEECTTTCCE---------------
T ss_pred             ceeEEeecccCccc---ccceeEEEeccCccccCcEECCCC--CEEEEECCCCEEEEEeCCCCcE---------------
Confidence            33444668888999   4566666655 5678999999999  3554 45677899888765421               


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeee---ccCCCeE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPF---KLHGLPV  543 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~---~~~~~V~  543 (707)
                                ..+         ...+...+.+++|+++|+++++...++ ..+.|.+|+..++... ..+   .....+.
T Consensus        79 ----------~~~---------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~  138 (333)
T 2dg1_A           79 ----------KRP---------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DIIEDLSTAYCID  138 (333)
T ss_dssp             ----------EEE---------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EEECSSSSCCCEE
T ss_pred             ----------EEE---------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-EEEccCccCCccc
Confidence                      111         113457799999999999888776550 0128999999877654 233   2345789


Q ss_pred             EEEEeCCCCEEEEEeC-------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcc
Q 005235          544 SSVFHPTRSIFFVSTK-------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKP  615 (707)
Q Consensus       544 ~v~fspd~~~l~v~sd-------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~  615 (707)
                      +++++|++.++++...       +.|..||..+++... +..+...+.+++|+|+|+.|+++ +.++.|.+||+......
T Consensus       139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~  217 (333)
T 2dg1_A          139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT  217 (333)
T ss_dssp             EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred             ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence            9999999988776653       567777766555433 32333458899999999866554 56789999999643232


Q ss_pred             eEE--------eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCC--CCCCeeEEE
Q 005235          616 YRV--------LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS--NGRGVMDCK  685 (707)
Q Consensus       616 ~~~--------l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~--~~~gV~~l~  685 (707)
                      +..        +.++ ..+..++++++|.++++...++.|.+|+      .. +..   +..+..+...  ....+.+++
T Consensus       218 ~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d------~~-g~~---~~~~~~~~~~~g~~~~~~~~~  286 (333)
T 2dg1_A          218 IQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFN------KR-GYP---IGQILIPGRDEGHMLRSTHPQ  286 (333)
T ss_dssp             EEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEEC------TT-SCE---EEEEECTTGGGTCSCBCCEEE
T ss_pred             cccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEEC------CC-CCE---EEEEEcCCCccccccCcceEE
Confidence            221        1122 4678899999999988888889999994      32 222   3444433210  000288999


Q ss_pred             EcCCCCEEEEEeCC
Q 005235          686 FHPRQPWLFTAGAD  699 (707)
Q Consensus       686 fspdg~~L~s~g~D  699 (707)
                      |+|++..|+.++.+
T Consensus       287 ~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          287 FIPGTNQLIICSND  300 (333)
T ss_dssp             ECTTSCEEEEEEEC
T ss_pred             ECCCCCEEEEEeCc
Confidence            99998877666555

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.61  E-value=6.5e-13  Score=137.10  Aligned_cols=219  Identities=15%  Similarity=0.203  Sum_probs=159.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEec-------CCcEEEEEE-ccCCCccEEEEEe--CCeEEEEECCCCCchhccc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-------GEAIQYVAW-NPLPELPVLAVSV--GQDVLILNTGLGNEEEQRR  457 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-------~~~V~~v~~-spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~  457 (707)
                      +.++++.+.++.|.+|+.. ++.+..+..       ...+.++++ .+++  .++++..  ++.|.+|+.. +..     
T Consensus        41 g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g--~l~v~~~~~~~~i~~~d~~-g~~-----  111 (286)
T 1q7f_A           41 NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG--DIIVTERSPTHQIQIYNQY-GQF-----  111 (286)
T ss_dssp             CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT--EEEEEECGGGCEEEEECTT-SCE-----
T ss_pred             CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC--eEEEEcCCCCCEEEEECCC-CcE-----
Confidence            3577787889999999976 777776653       246899999 5777  5666663  7888888832 211     


Q ss_pred             ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-
Q 005235          458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-  536 (707)
Q Consensus       458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-  536 (707)
                                         +..+         ...+...+.+++++++|+.+++...++   .|.+|+.... .. ..+ 
T Consensus       112 -------------------~~~~---------~~~~~~~~~~i~~~~~g~l~v~~~~~~---~i~~~~~~g~-~~-~~~~  158 (286)
T 1q7f_A          112 -------------------VRKF---------GATILQHPRGVTVDNKGRIIVVECKVM---RVIIFDQNGN-VL-HKFG  158 (286)
T ss_dssp             -------------------EEEE---------CTTTCSCEEEEEECTTSCEEEEETTTT---EEEEECTTSC-EE-EEEE
T ss_pred             -------------------EEEe---------cCccCCCceEEEEeCCCCEEEEECCCC---EEEEEcCCCC-EE-EEeC
Confidence                               0111         012345688999999999877776666   9999997543 33 444 


Q ss_pred             --ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC--CCCeEEEEEcCCCCEEEEEECCC-cEEEEECC
Q 005235          537 --KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG--LKEVSSIAIHPAGDNLIVGSREG-KLCWFDMD  610 (707)
Q Consensus       537 --~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~--~~~I~sl~~spdg~~L~sGs~Dg-~I~vwDl~  610 (707)
                        .....+.+++++|++.++++.. ++.|++||.. ++.+..+...  ...+.+|+++|+|.++++...++ .|.+||..
T Consensus       159 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence              2345689999999998666665 7999999974 5566666543  35789999999999888888776 99999964


Q ss_pred             CCCcceEEeecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          611 LSSKPYRVLKCHPK--DITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       611 ~~~~~~~~l~~h~~--~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                       + ..+..+..+..  .+.+++++|+|.++++ +.|++|+||+.
T Consensus       238 -g-~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          238 -G-QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             -S-CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             -C-CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence             3 55666665543  4789999999998877 57899999964

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.61  E-value=5.5e-13  Score=141.44  Aligned_cols=224  Identities=10%  Similarity=0.063  Sum_probs=157.2

Q ss_pred             CCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235          397 DGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN  473 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~  473 (707)
                      +++|.+||..+|+.+..+..  -..+.+|+++|+|.  ++++. .++.|++|+.......+                   
T Consensus        68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~--l~v~d~~~~~v~~~~~~g~~~~~-------------------  126 (329)
T 3fvz_A           68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN--YWVTDVALHQVFKLDPHSKEGPL-------------------  126 (329)
T ss_dssp             SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC--EEEEETTTTEEEEECTTCSSCCS-------------------
T ss_pred             CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC--EEEEECCCCEEEEEeCCCCeEEE-------------------
Confidence            46899999999998877654  35789999999993  55444 56789999864321000                   


Q ss_pred             CCcEEEEecCCccceEEeccCCCeEEEEEcC-CCCEEEEEe-CCCCccEEEEEECCCCceeeeee-ccC----------C
Q 005235          474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHR-RGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPF-KLH----------G  540 (707)
Q Consensus       474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp-~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~-~~~----------~  540 (707)
                          ..+... ........+...+..|+++| +|..+++.+ .++   .|.+|+. .+... ..+ ...          .
T Consensus       127 ----~~~~~~-~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~---~I~~~~~-~g~~~-~~~~~~g~~~~~~~~~~~  196 (329)
T 3fvz_A          127 ----LILGRS-MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS---RIVQFSP-SGKFV-TQWGEESSGSSPRPGQFS  196 (329)
T ss_dssp             ----EEESBT-TBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC---EEEEECT-TSCEE-EEECEECCSSSCCTTEES
T ss_pred             ----EEeccc-CCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC---eEEEEcC-CCCEE-EEeccCCCCCCCCCcccC
Confidence                000000 00000013445788999999 788888775 456   9999994 44444 445 211          2


Q ss_pred             CeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeC--CCCCeEEEEEcC------CCCEEEEEECCCcEEEEECC
Q 005235          541 LPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLET--GLKEVSSIAIHP------AGDNLIVGSREGKLCWFDMD  610 (707)
Q Consensus       541 ~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~--~~~~I~sl~~sp------dg~~L~sGs~Dg~I~vwDl~  610 (707)
                      .+..++|+|++..|+++.  ++.|++||+.+++.+..+..  +...+.+++++|      +|..+++.+.+.+|++||+.
T Consensus       197 ~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~  276 (329)
T 3fvz_A          197 VPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS  276 (329)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETT
T ss_pred             CCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcC
Confidence            388999999955555554  78999999998998888853  445688999999      33322333345589999998


Q ss_pred             CCCcceEEe---ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          611 LSSKPYRVL---KCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       611 ~~~~~~~~l---~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      ++ +.+..+   .++.....+|+++|+|.++++.+.++.|++|+.
T Consensus       277 ~g-~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          277 SG-EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             TC-CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             CC-eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            77 667776   366778999999999999999999999999964

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.58  E-value=7.7e-12  Score=142.66  Aligned_cols=311  Identities=10%  Similarity=0.039  Sum_probs=204.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECC--CCCch--hc-ccccceee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTG--LGNEE--EQ-RRVKDLLH  463 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~--~~~~~--~~-~~~~~v~~  463 (707)
                      .++++...+++|.++|..+++.+.++.....+.+++|+||| ..+++++.++.|.+||+.  +....  +. +....-+.
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia  246 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  246 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeE
Confidence            46677788999999999999999999988888999999999 478888889999999995  44321  11 01001111


Q ss_pred             ec--------ccccccCCCCcEEEEecCCccceEEec-----------cCC-CeEEEEEcCCCCEEEEEeCCCCccEEEE
Q 005235          464 VE--------TPTAPDDNMASIVSWLQHDKLDGIRLR-----------HFK-MVSSVEWHRRGDYLSTVMPAGESRAIFM  523 (707)
Q Consensus       464 ~~--------~~~~~~~~d~~i~iW~~~~~~~~~~~~-----------h~~-~V~~v~~sp~g~~lat~s~dg~~~~V~I  523 (707)
                      ..        +.+++....+++.++|..+......+.           |.. .+..+..++++..++....+  .+.|.+
T Consensus       247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~--~g~v~~  324 (567)
T 1qks_A          247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE--TGKILL  324 (567)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT--TTEEEE
T ss_pred             EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC--CCeEEE
Confidence            11        012334456788888876654432211           112 67888889887766555443  249999


Q ss_pred             EECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeC-CCCCe--EEEE-EcCCCCEE-
Q 005235          524 HQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLET-GLKEV--SSIA-IHPAGDNL-  595 (707)
Q Consensus       524 wdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~-~~~~I--~sl~-~spdg~~L-  595 (707)
                      .|........ ..+........+.|+|++++|+++.  ++.|.++|+.+++++..+.. +..+-  .... ++|++..+ 
T Consensus       325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~  404 (567)
T 1qks_A          325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW  404 (567)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEE
Confidence            9988764331 2224555677899999999999887  69999999999998887765 32110  1222 68885555 


Q ss_pred             EEEE-CCCcEEEEECCCC------CcceEEeecCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEecccccCCCCC
Q 005235          596 IVGS-REGKLCWFDMDLS------SKPYRVLKCHPKDITNVAFHRSYPLFASCSD-------DCTAYVFHGMVYSDLNQN  661 (707)
Q Consensus       596 ~sGs-~Dg~I~vwDl~~~------~~~~~~l~~h~~~I~~vafspdg~llaSgs~-------Dg~I~Vwd~~~~~Dl~~~  661 (707)
                      +++. .++.|.++|.++.      -+.++++......-..+.+||++++|.+...       .++|.|||+.... + ++
T Consensus       405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~-~-~g  482 (567)
T 1qks_A          405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMT-G-DG  482 (567)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCC-C-SS
T ss_pred             EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccc-c-cc
Confidence            4443 4689999999872      1566777755443345789999998887663       4599999776330 0 00


Q ss_pred             CcccceEEee-----CCCCCCCCCeeEEEEcCCCCEEEEEe-----CCCcEEEEe
Q 005235          662 PLIVPLEILR-----GHTSSNGRGVMDCKFHPRQPWLFTAG-----ADSVIRLYC  706 (707)
Q Consensus       662 ~~~~pl~~l~-----gh~~~~~~gV~~l~fspdg~~L~s~g-----~Dg~IrlWd  706 (707)
                      . ..++..+.     +-. ..+..+..+.|+|+|.+|..+.     .++.|.|+|
T Consensus       483 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          483 S-DPEFKTLPIAEWAGIT-EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             S-CCCEEEECHHHHHTCC-SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             c-CCCcEEeccccccccC-CCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            0 01122332     100 0112389999999999875552     378898887

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.58  E-value=4.5e-14  Score=163.88  Aligned_cols=230  Identities=10%  Similarity=-0.030  Sum_probs=150.4

Q ss_pred             EEEEEeCCCcEEEEeCC--C-CeEEEEEec------CCcEEEEEEccCCCccEEEEEeC----------CeEEEEECCCC
Q 005235          390 LEYKGSTDGTVRIWEVE--S-GRCLRVLEI------GEAIQYVAWNPLPELPVLAVSVG----------QDVLILNTGLG  450 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~--t-g~~l~~l~~------~~~V~~v~~spdg~~~lla~s~d----------~~V~lwd~~~~  450 (707)
                      ++++...+..|.+|++.  + +.. ..+..      ...+.+++|+|||. .|++++.+          ..|.+|++.+.
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  171 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGS  171 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred             EEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCC
Confidence            44454456778888876  3 443 33333      35688999999994 56666655          35666665431


Q ss_pred             CchhcccccceeeecccccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCC-----CccEEEEE
Q 005235          451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAG-----ESRAIFMH  524 (707)
Q Consensus       451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg-----~~~~V~Iw  524 (707)
                      ...                    +         .+....+. .+...+..++|||+|++|++++.+.     ....|.+|
T Consensus       172 ~~~--------------------~---------~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~  222 (662)
T 3azo_A          172 AAA--------------------D---------RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTA  222 (662)
T ss_dssp             TTT--------------------C---------GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred             ccc--------------------c---------CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEE
Confidence            000                    0         02222333 4456778899999999999888654     23589999


Q ss_pred             ECC-CCc--eeeeee--ccCCCeEEEEEeCCCCEEEEEe-CC--eEEEEECCCCeEEEEEeCCCCC--------eEEEEE
Q 005235          525 QLS-KKL--SHRIPF--KLHGLPVSSVFHPTRSIFFVST-KK--NIRVYDLLKQRLIKKLETGLKE--------VSSIAI  588 (707)
Q Consensus       525 dl~-~~~--~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg--~I~iwDl~~~~~~~~l~~~~~~--------I~sl~~  588 (707)
                      ++. ++.  .. ..+  .+...+..++|+|+|++++++. ++  .|.+||+.+++....+..+...        +.+++|
T Consensus       223 d~~~~g~~~~~-~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~  301 (662)
T 3azo_A          223 RVTEDGRFADT-RTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAP  301 (662)
T ss_dssp             EECTTSCEEEE-EEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEE
T ss_pred             EECCCCccccc-EEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeE
Confidence            998 452  22 334  4568899999999999777666 56  6777887677654333322221        567899


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEE-EEcCCCCEEEEEeCCCcEEEEec
Q 005235          589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNV-AFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~v-afspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +|++.++++++. +.+.||.++......+.+..|...+..+ +++.+.-++++++.+....||.+
T Consensus       302 ~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          302 LANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             CTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             eCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence            999999999998 9999995543323477888888888877 55544445566667765566643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=8.2e-13  Score=137.33  Aligned_cols=229  Identities=8%  Similarity=0.036  Sum_probs=161.5

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .....+++|+|+++..+++...++.|..|++.++                          +.          .+..+...
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--------------------------~~----------~~~~~~~~   70 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--------------------------LS----------PEMHPSHH   70 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--------------------------EE----------EEESSCSS
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--------------------------eE----------EEECCCCC
Confidence            4567899999999423555556788988886543                          11          12245567


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c----cCCCeEEEEEeCCCCEEEEE----e---------
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K----LHGLPVSSVFHPTRSIFFVS----T---------  558 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~----~~~~V~~v~fspd~~~l~v~----s---------  558 (707)
                      +.+++++++|.++++...++   .|.+|+..++... ..+ .    ....+..++++|+|.++++.    +         
T Consensus        71 ~~~l~~~~dg~l~v~~~~~~---~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~  146 (296)
T 3e5z_A           71 QNGHCLNKQGHLIACSHGLR---RLERQREPGGEWE-SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG  146 (296)
T ss_dssp             EEEEEECTTCCEEEEETTTT---EEEEECSTTCCEE-EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred             cceeeECCCCcEEEEecCCC---eEEEEcCCCCcEE-EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence            89999999999887776555   8999999777654 222 1    12356789999999988863    2         


Q ss_pred             -----CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc---eEEeecCCCCEEEEE
Q 005235          559 -----KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP---YRVLKCHPKDITNVA  630 (707)
Q Consensus       559 -----dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~---~~~l~~h~~~I~~va  630 (707)
                           .+.|..++.. ++. ..+..+......++|+|+|+.|++.+.++.|.+||+......   ...+..+...+.+++
T Consensus       147 ~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~  224 (296)
T 3e5z_A          147 EMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR  224 (296)
T ss_dssp             CCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE
T ss_pred             cccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE
Confidence                 2456666655 443 345556677899999999999977778899999999732233   233334455677899


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE-cCCCCEEEEEeCCCcEEE
Q 005235          631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF-HPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f-spdg~~L~s~g~Dg~Irl  704 (707)
                      ++++|.++++.  ++.|.+|+      .. +.   .+..+..+..     +.+++| +|++..|+.++.++.+++
T Consensus       225 ~d~~G~l~v~~--~~~v~~~~------~~-g~---~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          225 VDAGGLIWASA--GDGVHVLT------PD-GD---ELGRVLTPQT-----TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             EBTTSCEEEEE--TTEEEEEC------TT-SC---EEEEEECSSC-----CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             ECCCCCEEEEc--CCeEEEEC------CC-CC---EEEEEECCCC-----ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            99999977766  78899994      32 22   2555665543     788999 689999999988765543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=1.1e-12  Score=153.95  Aligned_cols=241  Identities=14%  Similarity=0.076  Sum_probs=165.4

Q ss_pred             cEEEEEEccCCCccEEEEEe-CC----eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc
Q 005235          419 AIQYVAWNPLPELPVLAVSV-GQ----DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH  493 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~-d~----~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h  493 (707)
                      .+.+++|||||. .|+.+.. +|    .|++||+.++...                                   .....
T Consensus       126 ~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~-----------------------------------~~~~~  169 (710)
T 2xdw_A          126 ALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKEL-----------------------------------PDVLE  169 (710)
T ss_dssp             EEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEE-----------------------------------EEEEE
T ss_pred             EEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCC-----------------------------------ccccc
Confidence            588999999994 4444433 33    6888887665221                                   11111


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCC-------------ccEEEEEECCCCceee-eee---ccCCCeEEEEEeCCCCEEEE
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGE-------------SRAIFMHQLSKKLSHR-IPF---KLHGLPVSSVFHPTRSIFFV  556 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~-------------~~~V~Iwdl~~~~~~~-~~~---~~~~~V~~v~fspd~~~l~v  556 (707)
                      ...+..++|+|+|+.|+.++.++.             ...|.+|++.++.... ..+   .+...+..+.|+|+|++|+.
T Consensus       170 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~  249 (710)
T 2xdw_A          170 RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (710)
T ss_dssp             EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence            123678999999999999988763             3359999998876421 222   23456789999999999887


Q ss_pred             Ee------CCeEEEEECCC------Ce-EEEEEeCCCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCCc-ceEE
Q 005235          557 ST------KKNIRVYDLLK------QR-LIKKLETGLKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLSSK-PYRV  618 (707)
Q Consensus       557 ~s------dg~I~iwDl~~------~~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~~~-~~~~  618 (707)
                      ++      +..|++||+.+      +. ....+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++.. ..+.
T Consensus       250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~  328 (710)
T 2xdw_A          250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV  328 (710)
T ss_dssp             EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred             EEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence            64      35899999986      43 35566666666655 488999988877654    3599999986631 3456


Q ss_pred             eecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235          619 LKCHPK--DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA  696 (707)
Q Consensus       619 l~~h~~--~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~  696 (707)
                      +..|..  .+.+++|++++.+++++..|+..+||-.    ++.++.   .+..+..+...    |..++++|++..|+..
T Consensus       329 l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~----~~~~g~---~~~~l~~~~~~----v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH----DLATGA---LLKIFPLEVGS----VVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE----ETTTCC---EEEEECCCSSE----EEEEECCTTCSEEEEE
T ss_pred             ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE----ECCCCC---EEEecCCCCce----EEEEecCCCCCEEEEE
Confidence            666654  6888999988889999999996655532    332232   24566666554    8899999999866533


Q ss_pred             -e---CCCcEEEEeC
Q 005235          697 -G---ADSVIRLYCH  707 (707)
Q Consensus       697 -g---~Dg~IrlWdl  707 (707)
                       +   ..++|.+||+
T Consensus       398 ~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          398 FTSFLSPGIIYHCDL  412 (710)
T ss_dssp             EECSSCCCEEEEEET
T ss_pred             EeCCCCCCEEEEEEC
Confidence             3   3478888874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.56  E-value=5.1e-14  Score=151.55  Aligned_cols=247  Identities=9%  Similarity=-0.057  Sum_probs=161.0

Q ss_pred             EEeCCCCeEEEEEecC-C-----cEEEEEEccCCCccEEEEEeC---CeEEEEECCCCCchhcccccceeeecccccccC
Q 005235          402 IWEVESGRCLRVLEIG-E-----AIQYVAWNPLPELPVLAVSVG---QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDD  472 (707)
Q Consensus       402 IWd~~tg~~l~~l~~~-~-----~V~~v~~spdg~~~lla~s~d---~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~  472 (707)
                      ..|..+|..+..+... .     .+.+++|+|+|. .|+.++..   ..|.+|++.++.                     
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~~~---------------------   71 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLETQQ---------------------   71 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTTE---------------------
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCC-EEEEEEecCCCceEEEEECCCCc---------------------
Confidence            4577888877777552 2     267889999994 44444432   256666765432                     


Q ss_pred             CCCcEEEEecCCccceEEeccCCC-eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEE------
Q 005235          473 NMASIVSWLQHDKLDGIRLRHFKM-VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVS------  544 (707)
Q Consensus       473 ~d~~i~iW~~~~~~~~~~~~h~~~-V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~------  544 (707)
                                    ...+..+... ...+.|+|+|++|++++.++   .|.+|++.++... ..+ .+.+....      
T Consensus        72 --------------~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~---~l~~~d~~~~~~~-~~~~~~~~~~~~g~~l~~  133 (396)
T 3c5m_A           72 --------------AVQLTEGKGDNTFGGFISTDERAFFYVKNEL---NLMKVDLETLEEQ-VIYTVDEEWKGYGTWVAN  133 (396)
T ss_dssp             --------------EEECCCSSCBCTTTCEECTTSSEEEEEETTT---EEEEEETTTCCEE-EEEECCTTEEEEEEEEEC
T ss_pred             --------------EEEeecCCCCccccceECCCCCEEEEEEcCC---cEEEEECCCCCcE-EEEecccccCCCCCEEEe
Confidence                          1111122222 23478999999999999877   8999999887764 333 23332222      


Q ss_pred             -------------EEEeCCCCEEEEE------eCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcC-CCCEEEEEECC---
Q 005235          545 -------------SVFHPTRSIFFVS------TKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHP-AGDNLIVGSRE---  601 (707)
Q Consensus       545 -------------v~fspd~~~l~v~------sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~D---  601 (707)
                                   +.|+|++..++++      .+..|.+||+.+++..... .+...+..+.|+| +|..|+..+.+   
T Consensus       134 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~  212 (396)
T 3c5m_A          134 SDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHD  212 (396)
T ss_dssp             TTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSS
T ss_pred             ccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCC
Confidence                         3457777766543      2578999999988765444 4557799999999 78877776654   


Q ss_pred             ---CcEEEEECCCCCcceEEeecCC--CCEEEEEEcCCCCEEEEEeCC-----CcEEEEecccccCCCCCCcccceEEee
Q 005235          602 ---GKLCWFDMDLSSKPYRVLKCHP--KDITNVAFHRSYPLFASCSDD-----CTAYVFHGMVYSDLNQNPLIVPLEILR  671 (707)
Q Consensus       602 ---g~I~vwDl~~~~~~~~~l~~h~--~~I~~vafspdg~llaSgs~D-----g~I~Vwd~~~~~Dl~~~~~~~pl~~l~  671 (707)
                         ..|.+||+..+ . ...+..+.  ..+..++|+|+|+.|+.++.+     +.|++|      |+.++..    ..+.
T Consensus       213 ~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~------d~~~g~~----~~l~  280 (396)
T 3c5m_A          213 LVDARMWLVNEDGS-N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKA------NPETLEN----EEVM  280 (396)
T ss_dssp             SCSCCCEEEETTSC-C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEE------CTTTCCE----EEEE
T ss_pred             CCCceEEEEECCCC-c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEE------ECCCCCe----EEee
Confidence               35888888654 3 33343332  358889999999977766544     449999      4444332    2222


Q ss_pred             CCCCCCCCCeeEEEEcC-CCCEEEEEe----------------CCCcEEEEeC
Q 005235          672 GHTSSNGRGVMDCKFHP-RQPWLFTAG----------------ADSVIRLYCH  707 (707)
Q Consensus       672 gh~~~~~~gV~~l~fsp-dg~~L~s~g----------------~Dg~IrlWdl  707 (707)
                      ....     .. ++|+| +|++|++++                .++.|.+|++
T Consensus       281 ~~~~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          281 VMPP-----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             ECCS-----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred             eCCC-----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence            1111     33 89999 999988765                3467999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=1.4e-12  Score=138.51  Aligned_cols=254  Identities=9%  Similarity=0.057  Sum_probs=173.0

Q ss_pred             CCCcEEEEeCCCCeEEEEEe-------cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235          396 TDGTVRIWEVESGRCLRVLE-------IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT  468 (707)
Q Consensus       396 ~DgtVrIWd~~tg~~l~~l~-------~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~  468 (707)
                      .+++|.+||..+++....+.       .......+++..+.  .+++...++.|.+||+.++...               
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~--lyv~~~~~~~v~viD~~t~~~~---------------   77 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGI--GWIVVNNSHVIFAIDINTFKEV---------------   77 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTE--EEEEEGGGTEEEEEETTTCCEE---------------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCE--EEEEEcCCCEEEEEECcccEEE---------------
Confidence            48999999999998776542       13456788885432  3444445688999998765321               


Q ss_pred             cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCC------Ce
Q 005235          469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHG------LP  542 (707)
Q Consensus       469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~------~V  542 (707)
                                          ........+..++++++|..+++...++   .|.++|+.++... ..+....      .+
T Consensus        78 --------------------~~i~~~~~p~~i~~~~~g~lyv~~~~~~---~v~~iD~~t~~~~-~~i~~g~~~~~~~~p  133 (328)
T 3dsm_A           78 --------------------GRITGFTSPRYIHFLSDEKAYVTQIWDY---RIFIINPKTYEIT-GYIECPDMDMESGST  133 (328)
T ss_dssp             --------------------EEEECCSSEEEEEEEETTEEEEEEBSCS---EEEEEETTTTEEE-EEEECTTCCTTTCBC
T ss_pred             --------------------EEcCCCCCCcEEEEeCCCeEEEEECCCC---eEEEEECCCCeEE-EEEEcCCccccCCCc
Confidence                                1112346688999999985444443566   9999999988765 4552222      56


Q ss_pred             EEEEEeCCCCEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC----------CcEEEEEC
Q 005235          543 VSSVFHPTRSIFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE----------GKLCWFDM  609 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D----------g~I~vwDl  609 (707)
                      ..+++  ++..|+++.   ++.|.+||+.+++.+.++... .....++++|+|++++++..+          +.|.++|.
T Consensus       134 ~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~  210 (328)
T 3dsm_A          134 EQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA  210 (328)
T ss_dssp             CCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred             ceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence            67777  345555553   689999999999998888765 346789999999877776554          78999999


Q ss_pred             CCCCcceEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235          610 DLSSKPYRVLKCH-PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       610 ~~~~~~~~~l~~h-~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp  688 (707)
                      .++ +....+... ......++|+|++..|+++..  .|.+||..      +.... ....+..+..    ....++++|
T Consensus       211 ~t~-~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~------t~~~~-~~~~~~~~~~----~p~gi~vdp  276 (328)
T 3dsm_A          211 ETF-TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE------ADRVP-VRPFLEFRDT----KYYGLTVNP  276 (328)
T ss_dssp             TTT-EEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT------CSSCC-SSCSBCCCSS----CEEEEEECT
T ss_pred             CCC-eEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC------CCcee-eeeeecCCCC----ceEEEEEcC
Confidence            876 555555432 236899999999998877654  89999653      22221 0111111122    389999999


Q ss_pred             C-CCEEEEE----eCCCcEEEEeC
Q 005235          689 R-QPWLFTA----GADSVIRLYCH  707 (707)
Q Consensus       689 d-g~~L~s~----g~Dg~IrlWdl  707 (707)
                      + +..+++.    ..++.|.+|+.
T Consensus       277 ~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          277 NNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             TTCCEEEEECTTSSSEEEEEEECT
T ss_pred             CCCeEEEEcccccccCCEEEEECC
Confidence            4 5555555    56889999974

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.53  E-value=1.6e-12  Score=132.52  Aligned_cols=233  Identities=7%  Similarity=0.043  Sum_probs=161.2

Q ss_pred             cEEEEEEccCCCccEEE-E-EeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          419 AIQYVAWNPLPELPVLA-V-SVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla-~-s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ...+|++++++  .+++ + +.++.|.+|+..+....                         .         ....+...
T Consensus        25 ~p~~i~~~~~g--~l~v~~~~~~~~i~~~~~~~~~~~-------------------------~---------~~~~~~~~   68 (270)
T 1rwi_B           25 SPSGVAVDSAG--NVYVTSEGMYGRVVKLATGSTGTT-------------------------V---------LPFNGLYQ   68 (270)
T ss_dssp             CEEEEEECTTC--CEEEEECSSSCEEEEECC-----E-------------------------E---------CCCCSCCS
T ss_pred             CccceEECCCC--CEEEEccCCCCcEEEecCCCcccc-------------------------e---------EeeCCcCC
Confidence            67899999999  3555 4 46678888875432110                         0         00122346


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI  573 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~  573 (707)
                      +.+++++++|..+++.. ++   .|.+|+..+....  .+  .....+.++++++++.++++.. ++.|.+|+..+....
T Consensus        69 p~~i~~~~~g~l~v~~~-~~---~i~~~d~~~~~~~--~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~  142 (270)
T 1rwi_B           69 PQGLAVDGAGTVYVTDF-NN---RVVTLAAGSNNQT--VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  142 (270)
T ss_dssp             CCCEEECTTCCEEEEET-TT---EEEEECTTCSCCE--ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred             cceeEECCCCCEEEEcC-CC---EEEEEeCCCceEe--eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE
Confidence            78899999999666655 55   8999998776543  33  3336789999999998666655 689999987655433


Q ss_pred             EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .....+...+.+|+++|+|.++++...++.|.+||.... ........+...+.+++++++|.++++...++.|.+|+. 
T Consensus       143 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~-  220 (270)
T 1rwi_B          143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA-  220 (270)
T ss_dssp             ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECT-
T ss_pred             eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcC-
Confidence            222233346789999999997777777889999998765 322222233367899999999988888888899999953 


Q ss_pred             cccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          654 VYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       654 ~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                           .....   ......+...    +.+++++++|.++++...+++|+++++
T Consensus       221 -----~~~~~---~~~~~~~~~~----p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          221 -----GSTTS---TVLPFTGLNT----PLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             -----TCSCC---EECCCCSCSC----EEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             -----CCCcc---eeeccCCCCC----ceeEEECCCCCEEEEECCCCEEEEEcC
Confidence                 22221   1111122222    899999999998888889999999874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.52  E-value=7.6e-13  Score=140.19  Aligned_cols=184  Identities=13%  Similarity=0.095  Sum_probs=130.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC--CccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-C------------
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAG--ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-K------------  559 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg--~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-d------------  559 (707)
                      ..+.+++|+|+|++|++++.++  ....|.+|++.++... ....... +.+++|+|+++.|+.++ +            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~-~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK-KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE-EEEEESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE-EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            5678999999999999887653  2446888899887654 3333334 99999999999888765 3            


Q ss_pred             ---------------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-------cEEEEECCCCCcceE
Q 005235          560 ---------------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG-------KLCWFDMDLSSKPYR  617 (707)
Q Consensus       560 ---------------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg-------~I~vwDl~~~~~~~~  617 (707)
                                     ..|.+||+.+++.+..+.. . .+.+++|+|+| ++++++.++       ...||.++++ . ..
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~-~~  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-K-EE  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-E-EE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-c-eE
Confidence                           5799999998887555655 3 78899999999 777776542       3445544432 3 44


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE-EEEcC
Q 005235          618 VLKCHPKDITNVAFHRSYPLFASCSDDC--------TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD-CKFHP  688 (707)
Q Consensus       618 ~l~~h~~~I~~vafspdg~llaSgs~Dg--------~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~-l~fsp  688 (707)
                      .+..+ ..+.++  +|+|+.|+.++.++        .|.+|      +  ++..   ...+.+|...    +.. +.|+ 
T Consensus       212 ~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~------d--~~~~---~~l~~~~~~~----~~~~~~~s-  272 (347)
T 2gop_A          212 KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIY------D--GKEV---MGILDEVDRG----VGQAKIKD-  272 (347)
T ss_dssp             EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEE------C--SSCE---EESSTTCCSE----EEEEEEET-
T ss_pred             EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEE------C--CCce---EeccccCCcc----cCCccEEc-
Confidence            45445 555554  99999888777543        57777      3  1211   2223344444    776 9999 


Q ss_pred             CCCEEEEEeCCCcEEEE
Q 005235          689 RQPWLFTAGADSVIRLY  705 (707)
Q Consensus       689 dg~~L~s~g~Dg~IrlW  705 (707)
                      ++ ++++++.++.++||
T Consensus       273 dg-~~~~~~~~~~~~l~  288 (347)
T 2gop_A          273 GK-VYFTLFEEGSVNLY  288 (347)
T ss_dssp             TE-EEEEEEETTEEEEE
T ss_pred             Cc-EEEEEecCCcEEEE
Confidence            88 99999999999998

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.51  E-value=6.9e-11  Score=121.63  Aligned_cols=256  Identities=9%  Similarity=-0.001  Sum_probs=174.9

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceee
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      +.+.++...++.|.+|+.. ++.. .+..   ...+.+|++.+++  .++++.. ++.|..|+.. +             
T Consensus        26 g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g-------------   87 (299)
T 2z2n_A           26 GKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDG--EVWFTENAANKIGRITKK-G-------------   87 (299)
T ss_dssp             SCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECTT-S-------------
T ss_pred             CCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCC--CEEEeCCCCCeEEEECCC-C-------------
Confidence            3456655567899999988 6543 3332   5679999999998  4666654 6788888753 1             


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP  542 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V  542 (707)
                                  .+..+..        ......+.++++.++|..+++...++   .|.+++. .+......+ .....+
T Consensus        88 ------------~~~~~~~--------~~~~~~~~~i~~~~~g~l~v~~~~~~---~i~~~d~-~g~~~~~~~~~~~~~~  143 (299)
T 2z2n_A           88 ------------IIKEYTL--------PNPDSAPYGITEGPNGDIWFTEMNGN---RIGRITD-DGKIREYELPNKGSYP  143 (299)
T ss_dssp             ------------CEEEEEC--------SSTTCCEEEEEECTTSCEEEEETTTT---EEEEECT-TCCEEEEECSSTTCCE
T ss_pred             ------------cEEEEeC--------CCcCCCceeeEECCCCCEEEEecCCc---eEEEECC-CCCEEEecCCCCCCCC
Confidence                        1122211        12345688999999998888776655   8999998 444331223 345678


Q ss_pred             EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235          543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~  620 (707)
                      .++++.+++.++++.. ++.|.+||. +++.... +..+...+.+++++++|.++++...++.|.+||. ++......+.
T Consensus       144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~  221 (299)
T 2z2n_A          144 SFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIP  221 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECC
Confidence            9999999998777665 689999999 6665432 2334456899999999987777667889999999 5532111233


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe--eCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL--RGHTSSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l--~gh~~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                      .+...+.+++++++|.++++...++.|.+|+.       .+.    +..+  ..+...    +.++++ +++.++++.+.
T Consensus       222 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-------~g~----~~~~~~~~~~~~----~~~i~~-~~g~l~v~~~~  285 (299)
T 2z2n_A          222 TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-------NNI----IEEYPIQIKSAE----PHGICF-DGETIWFAMEC  285 (299)
T ss_dssp             STTCCEEEEEECSTTCEEEEETTTTEEEEEET-------TTE----EEEEECSSSSCC----EEEEEE-CSSCEEEEETT
T ss_pred             CCCCCceeEEECCCCCEEEeccCCceEEEECC-------CCc----eEEEeCCCCCCc----cceEEe-cCCCEEEEecC
Confidence            34567999999999998887767889999953       111    2222  233333    899999 88887777664


Q ss_pred             CCcEE
Q 005235          699 DSVIR  703 (707)
Q Consensus       699 Dg~Ir  703 (707)
                      ++.++
T Consensus       286 ~~l~~  290 (299)
T 2z2n_A          286 DKIGK  290 (299)
T ss_dssp             TEEEE
T ss_pred             CcEEE
Confidence            44443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.50  E-value=9.1e-12  Score=132.13  Aligned_cols=224  Identities=8%  Similarity=0.007  Sum_probs=160.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .+.++...+++|.+||..+++.+.++........|++++++  .++++. .++.|.+||+.++...              
T Consensus        55 ~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g--~lyv~~~~~~~v~~iD~~t~~~~--------------  118 (328)
T 3dsm_A           55 IGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE--KAYVTQIWDYRIFIINPKTYEIT--------------  118 (328)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT--EEEEEEBSCSEEEEEETTTTEEE--------------
T ss_pred             EEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC--eEEEEECCCCeEEEEECCCCeEE--------------
Confidence            35556667899999999999999999877889999999998  466666 7889999998765211              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC--CCCccEEEEEECCCCceeeeeeccCCCeEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP--AGESRAIFMHQLSKKLSHRIPFKLHGLPVSS  545 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~--dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v  545 (707)
                                ..+....     ..+.......+++  ++..|.++..  ++   .|.++|+.++... ..+........+
T Consensus       119 ----------~~i~~g~-----~~~~~~~p~~i~~--~~~~lyv~~~~~~~---~v~viD~~t~~~~-~~i~~g~~p~~i  177 (328)
T 3dsm_A          119 ----------GYIECPD-----MDMESGSTEQMVQ--YGKYVYVNCWSYQN---RILKIDTETDKVV-DELTIGIQPTSL  177 (328)
T ss_dssp             ----------EEEECTT-----CCTTTCBCCCEEE--ETTEEEEEECTTCC---EEEEEETTTTEEE-EEEECSSCBCCC
T ss_pred             ----------EEEEcCC-----ccccCCCcceEEE--ECCEEEEEcCCCCC---EEEEEECCCCeEE-EEEEcCCCccce
Confidence                      0110000     0011124556677  3455555543  44   9999999998776 556444556789


Q ss_pred             EEeCCCCEEEEEe-C----------CeEEEEECCCCeEEEEEeCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235          546 VFHPTRSIFFVST-K----------KNIRVYDLLKQRLIKKLETG-LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       546 ~fspd~~~l~v~s-d----------g~I~iwDl~~~~~~~~l~~~-~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~  613 (707)
                      +++|++++++++. +          +.|.++|..+++....+... ......|+|+|++++|.++..  .|.+||+.++.
T Consensus       178 ~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~  255 (328)
T 3dsm_A          178 VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR  255 (328)
T ss_dssp             EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred             EEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence            9999998766655 3          68999999999988777643 246899999999999988765  89999998763


Q ss_pred             cce-EEeecCCCCEEEEEEcC-CCCEEEEE----eCCCcEEEEe
Q 005235          614 KPY-RVLKCHPKDITNVAFHR-SYPLFASC----SDDCTAYVFH  651 (707)
Q Consensus       614 ~~~-~~l~~h~~~I~~vafsp-dg~llaSg----s~Dg~I~Vwd  651 (707)
                      ... ..+..+.....+++++| ++.++++.    ..++.|.+|+
T Consensus       256 ~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence            211 11222245688999999 66777777    6789999994

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.50  E-value=2.5e-12  Score=138.56  Aligned_cols=241  Identities=11%  Similarity=0.067  Sum_probs=163.9

Q ss_pred             CcEEEEEe----------CCCcEEEEeCCCCeEEEEEec-------CCcEEEEEEccCCCccEEEEEe--CCeEEEEECC
Q 005235          388 CYLEYKGS----------TDGTVRIWEVESGRCLRVLEI-------GEAIQYVAWNPLPELPVLAVSV--GQDVLILNTG  448 (707)
Q Consensus       388 ~~~l~sgs----------~DgtVrIWd~~tg~~l~~l~~-------~~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~  448 (707)
                      +.++|+++          .+++|.+||+.+++.+.++..       ......++|+|+|. .|+++..  ++.|.+||+.
T Consensus        61 g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~  139 (361)
T 2oiz_A           61 GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVA  139 (361)
T ss_dssp             SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETT
T ss_pred             CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECC
Confidence            34777765          367899999999999988875       24567899999994 5666654  5799999998


Q ss_pred             CCCchhc-ccccceeee-cc-----cccccCCCCcEEEEecCC-ccceEE-------eccCCCeEEEEEcCCCCEEEEEe
Q 005235          449 LGNEEEQ-RRVKDLLHV-ET-----PTAPDDNMASIVSWLQHD-KLDGIR-------LRHFKMVSSVEWHRRGDYLSTVM  513 (707)
Q Consensus       449 ~~~~~~~-~~~~~v~~~-~~-----~~~~~~~d~~i~iW~~~~-~~~~~~-------~~h~~~V~~v~~sp~g~~lat~s  513 (707)
                      ++..... -.......+ .+     .+++.+.++.+..|+... ......       ..... ...+.+++++..++..+
T Consensus       140 ~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~  218 (361)
T 2oiz_A          140 KGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD-PIFIAPALDKDKAHFVS  218 (361)
T ss_dssp             TTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS-CBCSCCEECSSEEEEEB
T ss_pred             CCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC-ceEEEecccCCEEEEEe
Confidence            8743211 101010000 01     134455678888887653 222100       01111 12334467788888888


Q ss_pred             CCCCccEEEEEECCCCceee-eeec-----------cCCCeEEEEEeCCCCEEEEEe------------CCeEEEEECCC
Q 005235          514 PAGESRAIFMHQLSKKLSHR-IPFK-----------LHGLPVSSVFHPTRSIFFVST------------KKNIRVYDLLK  569 (707)
Q Consensus       514 ~dg~~~~V~Iwdl~~~~~~~-~~~~-----------~~~~V~~v~fspd~~~l~v~s------------dg~I~iwDl~~  569 (707)
                      .++   .|.++|+....... .++.           .......++|+|++..++++.            .+.|.+||+.+
T Consensus       219 ~~~---~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t  295 (361)
T 2oiz_A          219 YYG---NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT  295 (361)
T ss_dssp             TTS---EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred             CCC---eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence            776   89999997654221 1110           012223478999998888764            24899999999


Q ss_pred             CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCC
Q 005235          570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYP  636 (707)
Q Consensus       570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~  636 (707)
                      ++.+.++..+.  +.+|+|+|+|++|++++. +.|.+||+.++. +.+..+..+...-+.++|+|+|.
T Consensus       296 ~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          296 KQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            99999999886  999999999999998887 999999998751 45666666777889999999985

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.50  E-value=2.7e-12  Score=150.39  Aligned_cols=236  Identities=10%  Similarity=0.025  Sum_probs=155.5

Q ss_pred             cEEEEEEccCCCccEE-EEEeC----CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc
Q 005235          419 AIQYVAWNPLPELPVL-AVSVG----QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH  493 (707)
Q Consensus       419 ~V~~v~~spdg~~~ll-a~s~d----~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h  493 (707)
                      .+.+++|||||. .|+ +...+    ..|++||+.++....                                    ..+
T Consensus       122 ~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------~~~  164 (695)
T 2bkl_A          122 SLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSK------------------------------------VDV  164 (695)
T ss_dssp             EEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCS------------------------------------SCC
T ss_pred             EEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcC------------------------------------Ccc
Confidence            689999999994 333 22223    367888876653210                                    011


Q ss_pred             CCC--eEEEEEcCCCCEEEEEeCCCC----------ccEEEEEECCCCceee-eee---ccCCCeEEEEEeCCCCEEEEE
Q 005235          494 FKM--VSSVEWHRRGDYLSTVMPAGE----------SRAIFMHQLSKKLSHR-IPF---KLHGLPVSSVFHPTRSIFFVS  557 (707)
Q Consensus       494 ~~~--V~~v~~sp~g~~lat~s~dg~----------~~~V~Iwdl~~~~~~~-~~~---~~~~~V~~v~fspd~~~l~v~  557 (707)
                      ...  ...++|+|+|+.|+.++.+..          ...|++|++.++.... ..+   .+...+.++.|+|+|++|+++
T Consensus       165 ~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~  244 (695)
T 2bkl_A          165 IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVY  244 (695)
T ss_dssp             BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEE
T ss_pred             cCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEE
Confidence            111  267899999999999988652          3459999999876421 223   234578899999999988876


Q ss_pred             e-CC----eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCCCc-ceEEeecC--CCC
Q 005235          558 T-KK----NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR----EGKLCWFDMDLSSK-PYRVLKCH--PKD  625 (707)
Q Consensus       558 s-dg----~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~----Dg~I~vwDl~~~~~-~~~~l~~h--~~~  625 (707)
                      + ++    .|++++..+++. ..+..+...+....+ ++|. |++.+.    ++.|.+||+.++.. ....+..|  ...
T Consensus       245 ~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  321 (695)
T 2bkl_A          245 ILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS  321 (695)
T ss_dssp             EEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred             EeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence            6 44    677777655543 345555556666666 5666 554443    57899999976531 13444444  456


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-CCCCCCCeeEEEEcCCCCEEEEE----eCCC
Q 005235          626 ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-TSSNGRGVMDCKFHPRQPWLFTA----GADS  700 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-~~~~~~gV~~l~fspdg~~L~s~----g~Dg  700 (707)
                      |.+++|+ ++.+++++..|+..+||.+.    +. +.   .+..+..+ ...    |..++++|++..|+..    ...+
T Consensus       322 l~~~~~~-~~~lv~~~~~dg~~~l~~~~----~~-g~---~~~~l~~~~~~~----v~~~~~s~d~~~l~~~~ss~~~P~  388 (695)
T 2bkl_A          322 LLSVSIV-GGHLSLEYLKDATSEVRVAT----LK-GK---PVRTVQLPGVGA----ASNLMGLEDLDDAYYVFTSFTTPR  388 (695)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEEE----TT-CC---EEEECCCSSSSE----ECCCBSCTTCSEEEEEEEETTEEE
T ss_pred             EEEEEEE-CCEEEEEEEECCEEEEEEEe----CC-CC---eeEEecCCCCeE----EEEeecCCCCCEEEEEEcCCCCCC
Confidence            8889998 77799999999999998543    21 21   23445544 333    7888899999877632    2347


Q ss_pred             cEEEEeC
Q 005235          701 VIRLYCH  707 (707)
Q Consensus       701 ~IrlWdl  707 (707)
                      +|++||+
T Consensus       389 ~v~~~d~  395 (695)
T 2bkl_A          389 QIYKTSV  395 (695)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            8999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.48  E-value=5.7e-12  Score=130.88  Aligned_cols=213  Identities=11%  Similarity=0.026  Sum_probs=151.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeeccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      +++++..++.|.+|+..++  ...+.. ...+.+++|+|+|  .++++.. ++.|.+|++.++...              
T Consensus        42 l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg--~l~v~~~~~~~i~~~d~~~g~~~--------------  103 (296)
T 3e5z_A           42 VIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG--HLIACSHGLRRLERQREPGGEWE--------------  103 (296)
T ss_dssp             EEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC--CEEEEETTTTEEEEECSTTCCEE--------------
T ss_pred             EEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC--cEEEEecCCCeEEEEcCCCCcEE--------------
Confidence            7888999999999999887  555555 6779999999999  4666664 478999987655321              


Q ss_pred             ccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCC--------------CccEEEEEECCCCcee
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAG--------------ESRAIFMHQLSKKLSH  532 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg--------------~~~~V~Iwdl~~~~~~  532 (707)
                                 ....      ... .....+..++++++|+++++.+..+              ..+.|..++.. +.. 
T Consensus       104 -----------~~~~------~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-  164 (296)
T 3e5z_A          104 -----------SIAD------SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-  164 (296)
T ss_dssp             -----------EEEC------EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-
T ss_pred             -----------EEee------ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-
Confidence                       0000      000 1123567899999999888743110              11256666655 333 


Q ss_pred             eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC-CCeE---EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 005235          533 RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL-KQRL---IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCW  606 (707)
Q Consensus       533 ~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~-~~~~---~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~v  606 (707)
                       ..+ .....+..++|+|++..+++.+ ++.|.+|++. ++++   ...+..+...+.+|+++++|.++++.  ++.|.+
T Consensus       165 -~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~  241 (296)
T 3e5z_A          165 -SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHV  241 (296)
T ss_dssp             -EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEE
T ss_pred             -EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEE
Confidence             334 5666788999999999995455 6899999987 5554   33443344557889999999866655  789999


Q ss_pred             EECCCCCcceEEeecCCCCEEEEEE-cCCCCEEEEEeCCC
Q 005235          607 FDMDLSSKPYRVLKCHPKDITNVAF-HRSYPLFASCSDDC  645 (707)
Q Consensus       607 wDl~~~~~~~~~l~~h~~~I~~vaf-spdg~llaSgs~Dg  645 (707)
                      ||.+ + +.+..+..+.. +++++| +|++..|++++.++
T Consensus       242 ~~~~-g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          242 LTPD-G-DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             ECTT-S-CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             ECCC-C-CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence            9986 4 66777877777 999999 58999888888775

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=4.8e-11  Score=136.05  Aligned_cols=261  Identities=11%  Similarity=0.087  Sum_probs=177.2

Q ss_pred             CcEEEEEeCCCcEEEEeCC--CCeEEEEEecCCcEEEEEEc----cCCCccEEEE-EeCCeEEEEECCCCCchhcccc--
Q 005235          388 CYLEYKGSTDGTVRIWEVE--SGRCLRVLEIGEAIQYVAWN----PLPELPVLAV-SVGQDVLILNTGLGNEEEQRRV--  458 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~--tg~~l~~l~~~~~V~~v~~s----pdg~~~lla~-s~d~~V~lwd~~~~~~~~~~~~--  458 (707)
                      +.++|+++.|+.|.+||+.  +++.+..+........++|+    |+|. .++++ -.+++|.++|..+....-.-..  
T Consensus       208 Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk-~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~  286 (567)
T 1qks_A          208 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK-YAIAGAYWPPQYVIMDGETLEPKKIQSTRG  286 (567)
T ss_dssp             SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTT-EEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCC-EEEEEEccCCeEEEEECCCCcEEEEEeccc
Confidence            3488889999999999996  88999888887778999999    6995 44444 4678999999877654211000  


Q ss_pred             ----------c-ceeeeccc------ccccCCCCcEEEEecCCccc--eEEeccCCCeEEEEEcCCCCEEEEEeCCCCcc
Q 005235          459 ----------K-DLLHVETP------TAPDDNMASIVSWLQHDKLD--GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESR  519 (707)
Q Consensus       459 ----------~-~v~~~~~~------~~~~~~d~~i~iW~~~~~~~--~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~  519 (707)
                                . .+..+..+      ++.....+.|.+++......  ...+.......++.|+|+|++|++++..  .+
T Consensus       287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~--sn  364 (567)
T 1qks_A          287 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA--RN  364 (567)
T ss_dssp             ECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG--GT
T ss_pred             cccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC--CC
Confidence                      0 11111111      23334567777777654321  1133344567789999999999887753  24


Q ss_pred             EEEEEECCCCceeeeeec------cCCCeEEEEEeCCC-CEEEEEe--CCeEEEEECCC-------CeEEEEEeCCCCCe
Q 005235          520 AIFMHQLSKKLSHRIPFK------LHGLPVSSVFHPTR-SIFFVST--KKNIRVYDLLK-------QRLIKKLETGLKEV  583 (707)
Q Consensus       520 ~V~Iwdl~~~~~~~~~~~------~~~~V~~v~fspd~-~~l~v~s--dg~I~iwDl~~-------~~~~~~l~~~~~~I  583 (707)
                      .|.++|+.+++.. ..+.      |.+.-.. -++|++ +.++++.  ++.|.++|..+       .+.++++......-
T Consensus       365 ~V~ViD~~t~kl~-~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~  442 (567)
T 1qks_A          365 KLVVIDTKEGKLV-AIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGS  442 (567)
T ss_dssp             EEEEEETTTTEEE-EEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC
T ss_pred             eEEEEECCCCcEE-EEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCC
Confidence            8999999998765 4342      2211112 268874 4444554  58999999987       57888887654443


Q ss_pred             EEEEEcCCCCEEEEEEC-------CCcEEEEECCCC-----CcceEEeec--------CCCCEEEEEEcCCCCEEEEEe-
Q 005235          584 SSIAIHPAGDNLIVGSR-------EGKLCWFDMDLS-----SKPYRVLKC--------HPKDITNVAFHRSYPLFASCS-  642 (707)
Q Consensus       584 ~sl~~spdg~~L~sGs~-------Dg~I~vwDl~~~-----~~~~~~l~~--------h~~~I~~vafspdg~llaSgs-  642 (707)
                      ..+.+||++++|.+...       .+.|.+||+.+.     ...+..+.-        ....+..+.|+|+|..+..+. 
T Consensus       443 ~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~  522 (567)
T 1qks_A          443 LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVW  522 (567)
T ss_dssp             CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEee
Confidence            45788999999998763       358999999866     344455531        245789999999999655442 


Q ss_pred             ----CCCcEEEEecc
Q 005235          643 ----DDCTAYVFHGM  653 (707)
Q Consensus       643 ----~Dg~I~Vwd~~  653 (707)
                          .++.|.|+|..
T Consensus       523 ~~~~~~~~i~v~D~~  537 (567)
T 1qks_A          523 NGKDQESALVVVDDK  537 (567)
T ss_dssp             CCTTSCCEEEEEETT
T ss_pred             cCCCCCCcEEEEECC
Confidence                37899999543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.47  E-value=2.7e-11  Score=125.54  Aligned_cols=210  Identities=11%  Similarity=0.022  Sum_probs=161.3

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIG--EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~--~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      ..++++++.|+.|.+||..+|+.+..+...  ..+++++++|+|  .+++ +.++.|..||. ++.              
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG--~ilv-s~~~~V~~~d~-~G~--------------   66 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG--EILF-SYSKGAKMITR-DGR--------------   66 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS--CEEE-ECBSEEEEECT-TSC--------------
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC--CEEE-eCCCCEEEECC-CCC--------------
Confidence            468999999999999999999999998874  378999999999  4666 56788998886 432              


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC-CCCccEEEEEECCCCceeeeee--c-----
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPF--K-----  537 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~~~~--~-----  537 (707)
                                  .+|....       .....+.++.+.++|+++++.+. ++   .|..++. .++.. ..+  .     
T Consensus        67 ------------~~W~~~~-------~~~~~~~~~~~~~dG~~lv~~~~~~~---~v~~vd~-~Gk~l-~~~~~~~~~~~  122 (276)
T 3no2_A           67 ------------ELWNIAA-------PAGCEMQTARILPDGNALVAWCGHPS---TILEVNM-KGEVL-SKTEFETGIER  122 (276)
T ss_dssp             ------------EEEEEEC-------CTTCEEEEEEECTTSCEEEEEESTTE---EEEEECT-TSCEE-EEEEECCSCSS
T ss_pred             ------------EEEEEcC-------CCCccccccEECCCCCEEEEecCCCC---EEEEEeC-CCCEE-EEEeccCCCCc
Confidence                        3453322       12245778899999999999886 54   7777776 44433 333  1     


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235          538 LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                      .......+++.+++.++++.. ++.|.+||.. ++.+.++..+ ..+.++.+.++|+.+++++.+++|..||..++ +.+
T Consensus       123 ~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~  199 (276)
T 3no2_A          123 PHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN-RIV  199 (276)
T ss_dssp             GGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC-CEE
T ss_pred             ccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC-cEE
Confidence            112345677899999998887 8999999998 9999998865 45667888999999999998889999999887 666


Q ss_pred             EEeecCC------CCEEEEEEcCCCCEEEEEe
Q 005235          617 RVLKCHP------KDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       617 ~~l~~h~------~~I~~vafspdg~llaSgs  642 (707)
                      ..+..+.      ..+.+++..++|.++++.+
T Consensus       200 w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          200 RRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            6665332      2378899999999888874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.45  E-value=9.4e-12  Score=126.77  Aligned_cols=223  Identities=10%  Similarity=0.030  Sum_probs=153.7

Q ss_pred             CcEEE-EEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          388 CYLEY-KGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       388 ~~~l~-sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      +.+++ +.+.++.|.+|+..++... .+..  ...+.+|++++++  .++++..++.|.+|+.......           
T Consensus        35 g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g--~l~v~~~~~~i~~~d~~~~~~~-----------  100 (270)
T 1rwi_B           35 GNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAG--TVYVTDFNNRVVTLAAGSNNQT-----------  100 (270)
T ss_dssp             CCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTC--CEEEEETTTEEEEECTTCSCCE-----------
T ss_pred             CCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCC--CEEEEcCCCEEEEEeCCCceEe-----------
Confidence            34555 4467889999997665432 2222  3578899999998  4666666888999886543110           


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV  543 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~  543 (707)
                                    .+         .......+.+++++++|..+++...++   .|.+|+..+.... ... .....+.
T Consensus       101 --------------~~---------~~~~~~~p~~i~~~~~g~l~v~~~~~~---~i~~~~~~~~~~~-~~~~~~~~~p~  153 (270)
T 1rwi_B          101 --------------VL---------PFDGLNYPEGLAVDTQGAVYVADRGNN---RVVKLAAGSKTQT-VLPFTGLNDPD  153 (270)
T ss_dssp             --------------EC---------CCCSCSSEEEEEECTTCCEEEEEGGGT---EEEEECTTCCSCE-ECCCCSCCSCC
T ss_pred             --------------ee---------ecCCcCCCcceEECCCCCEEEEECCCC---EEEEEECCCceeE-eeccccCCCce
Confidence                          00         012235678999999999777766655   8999976554433 222 3345678


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235          544 SSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                      ++++++++.++++.. ++.|.+||............+...+.+|+++++|.++++...++.|.+||.... ........+
T Consensus       154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~  232 (270)
T 1rwi_B          154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TSTVLPFTG  232 (270)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS-CCEECCCCS
T ss_pred             eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC-cceeeccCC
Confidence            999999998666555 689999999876654433334367899999999977777777889999998754 222222233


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          623 PKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      ...+.+++++++|.++++.+.++.|++|+.
T Consensus       233 ~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          233 LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             CSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence            357899999999999999999999999943

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.45  E-value=3.3e-11  Score=125.44  Aligned_cols=233  Identities=12%  Similarity=0.155  Sum_probs=160.1

Q ss_pred             CCCcEEEE-------EeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCc
Q 005235          386 VACYLEYK-------GSTDGTVRIWEVESGRCLRVLE-----IGEAIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNE  452 (707)
Q Consensus       386 ~~~~~l~s-------gs~DgtVrIWd~~tg~~l~~l~-----~~~~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~  452 (707)
                      .++.++++       +..++.|.+|+..+++......     ....+.+++++++ +  .+++++..+.|.+|+.. +..
T Consensus        27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g--~l~v~~~~~~l~~~d~~-g~~  103 (314)
T 1pjx_A           27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLLVVQTD-GTF  103 (314)
T ss_dssp             TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEEEEETT-SCE
T ss_pred             CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC--cEEEEECCCCEEEEeCC-CCE
Confidence            34456666       5678899999998887654332     2367899999999 7  57777766788899876 421


Q ss_pred             hhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC------------CccE
Q 005235          453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG------------ESRA  520 (707)
Q Consensus       453 ~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg------------~~~~  520 (707)
                      ..                         .. ....   .......+.+++++++|+++++...++            ....
T Consensus       104 ~~-------------------------~~-~~~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~  154 (314)
T 1pjx_A          104 EE-------------------------IA-KKDS---EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             EE-------------------------CC-SBCT---TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             EE-------------------------EE-eccC---CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCe
Confidence            10                         00 0000   001224578999999998887765431            0136


Q ss_pred             EEEEECCCCceeeeeeccCCCeEEEEEe----CCCCEEEEEe--CCeEEEEECC-CCeE-----EEEEeCCC-CCeEEEE
Q 005235          521 IFMHQLSKKLSHRIPFKLHGLPVSSVFH----PTRSIFFVST--KKNIRVYDLL-KQRL-----IKKLETGL-KEVSSIA  587 (707)
Q Consensus       521 V~Iwdl~~~~~~~~~~~~~~~V~~v~fs----pd~~~l~v~s--dg~I~iwDl~-~~~~-----~~~l~~~~-~~I~sl~  587 (707)
                      |..++.. +... ..+........++|+    |++..|+++.  ++.|.+||+. +++.     ...+..+. ..+..++
T Consensus       155 l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~  232 (314)
T 1pjx_A          155 IYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             EEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence            7777765 4332 222444567899999    9998776664  6899999986 4542     22333333 5588999


Q ss_pred             EcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235          588 IHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       588 ~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~  653 (707)
                      ++++|.++++...++.|.+||..++ +.+..+..+...+.+++|+|++. ++++...++.|..|+..
T Consensus       233 ~d~~G~l~v~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          233 FDEDNNLLVANWGSSHIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ECCCCCEEEEEcCCCEEEEEcCCCC-cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            9999998888888899999999765 55666777778899999999999 55566667889999653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.45  E-value=2.6e-11  Score=127.78  Aligned_cols=220  Identities=12%  Similarity=0.103  Sum_probs=152.2

Q ss_pred             ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEe
Q 005235          470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFH  548 (707)
Q Consensus       470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fs  548 (707)
                      ....++.++.|  .......+..+...+.+++|+++|+.++++..++   .|.+|+..++... ..+ .+...+.+++|+
T Consensus        22 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~---~i~~~d~~~~~~~-~~~~~~~~~~~~i~~~   95 (333)
T 2dg1_A           22 PIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEG---NIFKINPETKEIK-RPFVSHKANPAAIKIH   95 (333)
T ss_dssp             CCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTC---EEEEECTTTCCEE-EEEECSSSSEEEEEEC
T ss_pred             EEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCC---EEEEEeCCCCcEE-EEeeCCCCCcceEEEC
Confidence            33456677777  2222333556667789999999999777777766   9999999887765 333 556789999999


Q ss_pred             CCCCEEEEEe-C----CeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCCCCEEEEEEC------CCcEEEEECCCCCcc
Q 005235          549 PTRSIFFVST-K----KNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPAGDNLIVGSR------EGKLCWFDMDLSSKP  615 (707)
Q Consensus       549 pd~~~l~v~s-d----g~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spdg~~L~sGs~------Dg~I~vwDl~~~~~~  615 (707)
                      |++.+++++. +    +.|.+||..++.....+.  .....+.+++++|+|.++++...      .+.|..+|...+ . 
T Consensus        96 ~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~-~-  173 (333)
T 2dg1_A           96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-T-  173 (333)
T ss_dssp             TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-C-
T ss_pred             CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC-E-
Confidence            9998777766 4    589999998876543343  23356899999999987776654      355666666543 2 


Q ss_pred             eEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecccccCCCCCCcccc-----eEEeeCCCCCCCCCeeEEEEcCC
Q 005235          616 YRVLKCHPKDITNVAFHRSYPLF-ASCSDDCTAYVFHGMVYSDLNQNPLIVP-----LEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       616 ~~~l~~h~~~I~~vafspdg~ll-aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~p-----l~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      +..+..+...+..++|+|++..| ++.+.++.|.+|+...     .......     ...+.++ .    .+..++++++
T Consensus       174 ~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~-----~g~~~~~~~~~~~~~~~~~-~----~~~~i~~d~~  243 (333)
T 2dg1_A          174 VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED-----DGVTIQPFGATIPYYFTGH-E----GPDSCCIDSD  243 (333)
T ss_dssp             EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT-----TSSSEEEEEEEEEEECCSS-S----EEEEEEEBTT
T ss_pred             EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC-----CCcCcccccceEEEecCCC-C----CCCceEECCC
Confidence            33333334568899999999855 5556688999996531     1111110     1112232 1    2888999999


Q ss_pred             CCEEEEEeCCCcEEEEeC
Q 005235          690 QPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       690 g~~L~s~g~Dg~IrlWdl  707 (707)
                      |.++++...++.|.+|+.
T Consensus       244 G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          244 DNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             CCEEEEEETTTEEEEECT
T ss_pred             CCEEEEEcCCCEEEEECC
Confidence            998888888899999973

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.42  E-value=5.5e-10  Score=120.82  Aligned_cols=271  Identities=11%  Similarity=-0.046  Sum_probs=170.4

Q ss_pred             CCcEEEEEeC--CC---cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCCCC
Q 005235          387 ACYLEYKGST--DG---TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGLGN  451 (707)
Q Consensus       387 ~~~~l~sgs~--Dg---tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~~~  451 (707)
                      ++..+|....  ..   +|.++|..+++.+.++.....- .++++|||. .++++.          .++.|.+||+.+..
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~  108 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFL  108 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCC-EEEEEeccccccccCCCCCeEEEEECCCCc
Confidence            3455665543  22   8999999999998888774444 999999994 555554          25678888876542


Q ss_pred             chhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce
Q 005235          452 EEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS  531 (707)
Q Consensus       452 ~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~  531 (707)
                      ..                        ..+......   ...+......++|+|+|++|+++.... ...|.++| .+++.
T Consensus       109 ~~------------------------~~i~~~~~~---~~~~g~~p~~~~~spDG~~l~v~n~~~-~~~v~viD-~t~~~  159 (373)
T 2mad_H          109 PI------------------------ADIELPDAP---RFDVGPYSWMNANTPNNADLLFFQFAA-GPAVGLVV-QGGSS  159 (373)
T ss_pred             EE------------------------EEEECCCcc---ccccCCCccceEECCCCCEEEEEecCC-CCeEEEEE-CCCCE
Confidence            11                        011000000   000113356899999999999887531 23899999 88877


Q ss_pred             eeee-eccCCCeEEEEEeCCCCEEEE-Ee-CCeEEEEECCCCeEEEEEe-----CCCCC-eEEEEEcCCCCEEEEEECCC
Q 005235          532 HRIP-FKLHGLPVSSVFHPTRSIFFV-ST-KKNIRVYDLLKQRLIKKLE-----TGLKE-VSSIAIHPAGDNLIVGSREG  602 (707)
Q Consensus       532 ~~~~-~~~~~~V~~v~fspd~~~l~v-~s-dg~I~iwDl~~~~~~~~l~-----~~~~~-I~sl~~spdg~~L~sGs~Dg  602 (707)
                      . .. +...+   ++.+.|+++..++ .+ ||.+.++|+ +++.+....     ....+ .....+.+++..++..+..+
T Consensus       160 ~-~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  234 (373)
T 2mad_H          160 D-DQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG  234 (373)
T ss_pred             E-eEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc
Confidence            6 66 53332   3556676654433 33 899999999 887663322     12222 13345667766666556788


Q ss_pred             cEEEEECCCCC-cceEEeecC----------CCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccCCCCC
Q 005235          603 KLCWFDMDLSS-KPYRVLKCH----------PKDITNVAFHRSYPLFASCSD----------DCTAYVFHGMVYSDLNQN  661 (707)
Q Consensus       603 ~I~vwDl~~~~-~~~~~l~~h----------~~~I~~vafspdg~llaSgs~----------Dg~I~Vwd~~~~~Dl~~~  661 (707)
                      .+.+.|+.... .....+...          ......++|+|++..++.+..          .+.|.++      |+.+.
T Consensus       235 ~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI------D~~t~  308 (373)
T 2mad_H          235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV------TGLVG  308 (373)
T ss_pred             eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE------ECCCC
Confidence            99999997542 112222111          123445789999887666543          3578888      44444


Q ss_pred             CcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEe-CCCcEEEEeC
Q 005235          662 PLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       662 ~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g-~Dg~IrlWdl  707 (707)
                      ..   +..+.....     ..+++|+|||+ .|+++. .++.|.+||+
T Consensus       309 ~v---v~~i~~g~~-----p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          309 QT---SSQISLGHD-----VDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             EE---EEEEECCCC-----cCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            43   455543222     78999999999 777777 5899999984

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=2.3e-11  Score=143.59  Aligned_cols=238  Identities=16%  Similarity=0.132  Sum_probs=157.7

Q ss_pred             cEEEEEEccCCCccEEEEEe-CC----eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEecc
Q 005235          419 AIQYVAWNPLPELPVLAVSV-GQ----DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH  493 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~-d~----~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h  493 (707)
                      .+.+++|||||. .|+.++. +|    .|++||+.++...                                   ....+
T Consensus       164 ~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~-----------------------------------~~~~~  207 (741)
T 1yr2_A          164 ALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPL-----------------------------------ADELK  207 (741)
T ss_dssp             EEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEE-----------------------------------EEEEE
T ss_pred             EEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCC-----------------------------------CccCC
Confidence            688999999994 4444433 23    5888887665321                                   11011


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCC-----------ccEEEEEECCCCceee-eeec---cCCCeEEEEEeCCCCEEEEEe
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGE-----------SRAIFMHQLSKKLSHR-IPFK---LHGLPVSSVFHPTRSIFFVST  558 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~-----------~~~V~Iwdl~~~~~~~-~~~~---~~~~V~~v~fspd~~~l~v~s  558 (707)
                      ...+..++|+|+ +.|+.++.++.           ...|.+|++.++.... ..+.   +...+..+.|+|+|++|+.++
T Consensus       208 ~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~  286 (741)
T 1yr2_A          208 WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS  286 (741)
T ss_dssp             EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE
Confidence            112357899999 99999887663           3469999998776421 2332   223588999999999888765


Q ss_pred             -CC-----eEEEEECCCC--eEEEEEeCCCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCC-CcceEEeecCCCC
Q 005235          559 -KK-----NIRVYDLLKQ--RLIKKLETGLKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLS-SKPYRVLKCHPKD  625 (707)
Q Consensus       559 -dg-----~I~iwDl~~~--~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~-~~~~~~l~~h~~~  625 (707)
                       ++     .|++||+.++  ++...+..+...+.... +|+|+.|+..+.+    +.|.+||+..+ ......+..+...
T Consensus       287 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~  365 (741)
T 1yr2_A          287 SEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN  365 (741)
T ss_dssp             ECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE
T ss_pred             EccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe
Confidence             43     8999999877  31456666555555553 4899999888764    45999999764 2334444455556


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-CCCCCCCeeEEEEcCCCCEEE-EEe---CCC
Q 005235          626 ITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-TSSNGRGVMDCKFHPRQPWLF-TAG---ADS  700 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-~~~~~~gV~~l~fspdg~~L~-s~g---~Dg  700 (707)
                      +.+++|+ ++.++++...|+..+||.+.    +. +.   .+..+..+ ...    |..++|+|+++.|+ +.+   ..+
T Consensus       366 l~~~~~~-~~~lv~~~~~dg~~~l~~~~----~~-g~---~~~~l~~~~~~~----v~~~~~s~d~~~l~~~~ss~~~P~  432 (741)
T 1yr2_A          366 LESVGIA-GNRLFASYIHDAKSQVLAFD----LD-GK---PAGAVSLPGIGS----ASGLSGRPGDRHAYLSFSSFTQPA  432 (741)
T ss_dssp             EEEEEEE-BTEEEEEEEETTEEEEEEEE----TT-SC---EEEECBCSSSCE----EEEEECCBTCSCEEEEEEETTEEE
T ss_pred             EEEEEEE-CCEEEEEEEECCEEEEEEEe----CC-CC---ceeeccCCCCeE----EEEeecCCCCCEEEEEEcCCCCCC
Confidence            7788887 66788899999998888542    21 21   23445432 333    88999999998665 322   347


Q ss_pred             cEEEEeC
Q 005235          701 VIRLYCH  707 (707)
Q Consensus       701 ~IrlWdl  707 (707)
                      +|.+||+
T Consensus       433 ~i~~~d~  439 (741)
T 1yr2_A          433 TVLALDP  439 (741)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            8888874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.42  E-value=1.7e-11  Score=143.89  Aligned_cols=232  Identities=9%  Similarity=0.065  Sum_probs=150.0

Q ss_pred             cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEE
Q 005235          399 TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIV  478 (707)
Q Consensus       399 tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~  478 (707)
                      +|++||+.+|+.+........+.+++|+|||+ .|+.++.++.      .. ..  .   ..       .........|.
T Consensus       152 ~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~-~l~~~~~~~~------~~-~~--~---~~-------~~~~~~~~~v~  211 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGK-GMFYNAYPQQ------DG-KS--D---GT-------ETSTNLHQKLY  211 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSCCEEECTTSS-EEEEEECCCC------SS-CC--S---SS-------CCCCCCCCEEE
T ss_pred             EEEEEECCCCCCCcccccCcccceEEEEeCCC-EEEEEEECCc------cc-cc--c---cc-------ccccCCCCEEE
Confidence            89999999999876433333367899999994 5666666543      00 00  0   00       00000112244


Q ss_pred             EEecCCccce---EEe--ccCCCeEEEEEcCCCCEEEEEeCCCC--ccEEEEEECCC------Cc-eeeeee-ccCCCeE
Q 005235          479 SWLQHDKLDG---IRL--RHFKMVSSVEWHRRGDYLSTVMPAGE--SRAIFMHQLSK------KL-SHRIPF-KLHGLPV  543 (707)
Q Consensus       479 iW~~~~~~~~---~~~--~h~~~V~~v~~sp~g~~lat~s~dg~--~~~V~Iwdl~~------~~-~~~~~~-~~~~~V~  543 (707)
                      +|++.+....   +..  .|...+..++|+|+|++|+.++..+.  ...|.+||+.+      +. .. ..+ .+...+.
T Consensus       212 ~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~l~~~~~~~~  290 (710)
T 2xdw_A          212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW-VKLIDNFEGEY  290 (710)
T ss_dssp             EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC-EEEECSSSSCE
T ss_pred             EEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce-EEeeCCCCcEE
Confidence            4444332211   111  24556789999999999998875332  35899999986      43 23 455 5555554


Q ss_pred             EEEEeCCCCEEEEEe-C----CeEEEEECCCCe--EEEEEeCCCC--CeEEEEEcCCCCEEEEEECCCc--EEEEECCCC
Q 005235          544 SSVFHPTRSIFFVST-K----KNIRVYDLLKQR--LIKKLETGLK--EVSSIAIHPAGDNLIVGSREGK--LCWFDMDLS  612 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-d----g~I~iwDl~~~~--~~~~l~~~~~--~I~sl~~spdg~~L~sGs~Dg~--I~vwDl~~~  612 (707)
                      . .|+|+|..|+..+ .    ..|.+||+.++.  ....+..+..  .+.+++|++++.+++++..++.  |.+||+.++
T Consensus       291 ~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g  369 (710)
T 2xdw_A          291 D-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG  369 (710)
T ss_dssp             E-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence            4 5888998877765 2    369999998764  2345555544  5888999988888888888885  566777555


Q ss_pred             CcceEEeecCCCCEEEEEEcCCCCEEE-EEe---CCCcEEEEecc
Q 005235          613 SKPYRVLKCHPKDITNVAFHRSYPLFA-SCS---DDCTAYVFHGM  653 (707)
Q Consensus       613 ~~~~~~l~~h~~~I~~vafspdg~lla-Sgs---~Dg~I~Vwd~~  653 (707)
                       +....+..+...|..++++|++..|+ +.+   ..++|++||+.
T Consensus       370 -~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  413 (710)
T 2xdw_A          370 -ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (710)
T ss_dssp             -CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             -CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence             56677887888899999999987554 333   34789999654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.41  E-value=8.8e-10  Score=113.26  Aligned_cols=234  Identities=9%  Similarity=-0.030  Sum_probs=163.2

Q ss_pred             CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK  495 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~  495 (707)
                      ...+.+|++.++|  .++++.. ++.|.+|++. +.                         +..+..        ..+..
T Consensus        14 ~~~~~~i~~d~~g--~l~v~~~~~~~v~~~d~~-~~-------------------------~~~~~~--------~~~~~   57 (299)
T 2z2n_A           14 DTGPYGITVSDKG--KVWITQHKANMISCINLD-GK-------------------------ITEYPL--------PTPDA   57 (299)
T ss_dssp             SCCEEEEEECTTS--CEEEEETTTTEEEEECTT-CC-------------------------EEEEEC--------SSTTC
T ss_pred             CCCccceEECCCC--CEEEEecCCCcEEEEcCC-CC-------------------------eEEecC--------CcccC
Confidence            3678999999999  4666665 6789888865 31                         111111        12346


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI  573 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~  573 (707)
                      .+.+++++++|..+++...++   .|..|+... ......+ .....+.++++++++.++++.. ++.|.+||. +++..
T Consensus        58 ~~~~i~~~~~g~l~v~~~~~~---~i~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           58 KVMCLTISSDGEVWFTENAAN---KIGRITKKG-IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTT---EEEEECTTS-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ceeeEEECCCCCEEEeCCCCC---eEEEECCCC-cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            788999999999888766556   899999863 3221222 2456789999999998777765 689999998 55544


Q ss_pred             EE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          574 KK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV-LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       574 ~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~-l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      .. +......+.+++++++|..+++...++.|..||. ++ ..... +..+...+.+++++++|.++++...++.|.+|+
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  210 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG-DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT  210 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC-cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence            32 2223456899999999988877777789999998 44 32222 333456789999999999888877788999994


Q ss_pred             cccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          652 GMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       652 ~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                            . ++...  ...+..+...    +.+++++++|.++++...++.|.+|+
T Consensus       211 ------~-~g~~~--~~~~~~~~~~----~~~i~~~~~g~l~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          211 ------T-SGEIT--EFKIPTPNAR----PHAITAGAGIDLWFTEWGANKIGRLT  252 (299)
T ss_dssp             ------T-TCCEE--EEECSSTTCC----EEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             ------C-CCcEE--EEECCCCCCC----ceeEEECCCCCEEEeccCCceEEEEC
Confidence                  3 22211  1112223333    89999999999777766778888887

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.40  E-value=1.4e-09  Score=111.69  Aligned_cols=260  Identities=10%  Similarity=0.020  Sum_probs=173.9

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceee
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      +.+.++...++.|.+|+.. ++... +..   ...+.+|++.+++  .++++.. ++.|..|+.. +.            
T Consensus        31 g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~v~~~d~~-g~------------   93 (300)
T 2qc5_A           31 GKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLG--DIWFTENGANKIGKLSKK-GG------------   93 (300)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECTT-SC------------
T ss_pred             CCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCC--CEEEEecCCCeEEEECCC-CC------------
Confidence            3466666678999999987 66543 333   3679999999998  4666554 5778888754 21            


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP  542 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V  542 (707)
                                   +..+..        ......+.++++.++|.++++...++   .|..++.. +......+ .....+
T Consensus        94 -------------~~~~~~--------~~~~~~~~~i~~~~~g~l~v~~~~~~---~i~~~~~~-g~~~~~~~~~~~~~~  148 (300)
T 2qc5_A           94 -------------FTEYPL--------PQPDSGPYGITEGLNGDIWFTQLNGD---RIGKLTAD-GTIYEYDLPNKGSYP  148 (300)
T ss_dssp             -------------EEEEEC--------SSTTCCEEEEEECSTTCEEEEETTTT---EEEEECTT-SCEEEEECSSTTCCE
T ss_pred             -------------eEEecC--------CCCCCCCccceECCCCCEEEEccCCC---eEEEECCC-CCEEEccCCCCCCCc
Confidence                         111111        11235688999999999887776555   89999987 44431233 345678


Q ss_pred             EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235          543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~  620 (707)
                      .++++.+++.++++.. ++.|.+||. +++.... +..+...+.+++++++|.++++....+.|.+||. .+......+.
T Consensus       149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~  226 (300)
T 2qc5_A          149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP  226 (300)
T ss_dssp             EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             eeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC
Confidence            9999999999655555 688999998 5554432 2233456899999999987777666778999998 3422222233


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                      .+...+.+++++++|.++++...++.|.+|+      . ++.. . ...+......    +.++++.++|.++++.. . 
T Consensus       227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~------~-~g~~-~-~~~~~~~~~~----~~~i~~~~~g~l~v~~~-~-  291 (300)
T 2qc5_A          227 TPNARPHAITAGKNSEIWFTEWGANQIGRIT------N-DNTI-Q-EYQLQTENAE----PHGITFGKDGSVWFALK-C-  291 (300)
T ss_dssp             STTCCEEEEEECSTTCEEEEETTTTEEEEEC------T-TSCE-E-EEECCSTTCC----CCCEEECTTSCEEEECS-S-
T ss_pred             CCCCCceEEEECCCCCEEEeccCCCeEEEEC------C-CCcE-E-EEECCccCCc----cceeEeCCCCCEEEEcc-C-
Confidence            3456789999999999888777788999994      3 1211 1 1112222233    88999999998666655 4 


Q ss_pred             cEEEEe
Q 005235          701 VIRLYC  706 (707)
Q Consensus       701 ~IrlWd  706 (707)
                      .|..++
T Consensus       292 ~i~~~~  297 (300)
T 2qc5_A          292 KIGKLN  297 (300)
T ss_dssp             EEEEEE
T ss_pred             ceEEeC
Confidence            565554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.39  E-value=3.4e-10  Score=117.70  Aligned_cols=238  Identities=12%  Similarity=0.079  Sum_probs=157.9

Q ss_pred             CCcEEEEEEccCCCccEEEE--------EeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccce
Q 005235          417 GEAIQYVAWNPLPELPVLAV--------SVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG  488 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~--------s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~  488 (707)
                      -....+++|++++  .++++        ..++.|.+|++.++..                         ..+...     
T Consensus        17 ~~~~~~~~~~~~g--~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-------------------------~~~~~~-----   64 (314)
T 1pjx_A           17 IPGAEGPVFDKNG--DFYIVAPEVEVNGKPAGEILRIDLKTGKK-------------------------TVICKP-----   64 (314)
T ss_dssp             CTTCEEEEECTTS--CEEEEETTCEETTEECCEEEEECTTTCCE-------------------------EEEECC-----
T ss_pred             CCCccCceECCCC--CEEEEEeccccCCCCCCEEEEEeCCCCcE-------------------------EEEEec-----
Confidence            3456899999988  46655        6778899988655421                         111100     


Q ss_pred             EEeccCCCeEEEEEcCC-CCEEEEEeCCCCccEEEEEECCCCceeeee-e-c----cCCCeEEEEEeCCCCEEEEEe-C-
Q 005235          489 IRLRHFKMVSSVEWHRR-GDYLSTVMPAGESRAIFMHQLSKKLSHRIP-F-K----LHGLPVSSVFHPTRSIFFVST-K-  559 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp~-g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~-~-~----~~~~V~~v~fspd~~~l~v~s-d-  559 (707)
                      ...++...+.+++++++ |..+++.. ..   .|.+|+.. +... .. . .    ....+.++++++++.++++.. + 
T Consensus        65 ~~~~~~~~~~~i~~~~~~g~l~v~~~-~~---~l~~~d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  138 (314)
T 1pjx_A           65 EVNGYGGIPAGCQCDRDANQLFVADM-RL---GLLVVQTD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGE  138 (314)
T ss_dssp             EETTEECCEEEEEECSSSSEEEEEET-TT---EEEEEETT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred             ccCCCCCCCceEEEecCCCcEEEEEC-CC---CEEEEeCC-CCEE-EEEeccCCCccccCCcCEEECCCCCEEEEecCcc
Confidence            00123456889999999 66555443 33   78999988 5543 33 2 1    123578999999998777665 3 


Q ss_pred             --------------CeEEEEECCCCeEEEEEeCCCCCeEEEEEc----CCCCEEEEE-ECCCcEEEEECCCCCc-----c
Q 005235          560 --------------KNIRVYDLLKQRLIKKLETGLKEVSSIAIH----PAGDNLIVG-SREGKLCWFDMDLSSK-----P  615 (707)
Q Consensus       560 --------------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~s----pdg~~L~sG-s~Dg~I~vwDl~~~~~-----~  615 (707)
                                    +.|..||.. ++..... .+......++|+    |+|+.|+++ +.++.|.+||+.....     .
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~  216 (314)
T 1pjx_A          139 VAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV  216 (314)
T ss_dssp             CTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred             cccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE
Confidence                          567778776 5544332 233457899999    999766555 5678999999862112     2


Q ss_pred             eEEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235          616 YRVLKCHP-KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF  694 (707)
Q Consensus       616 ~~~l~~h~-~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~  694 (707)
                      +..+..+. ..+..++++++|.++++...++.|.+|+      ..++..   +..+..+...    +.+++|+|++.+|+
T Consensus       217 ~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d------~~~g~~---~~~~~~~~~~----~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          217 WGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG------PDGGQP---KMRIRCPFEK----PSNLHFKPQTKTIF  283 (314)
T ss_dssp             EEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC------TTCBSC---SEEEECSSSC----EEEEEECTTSSEEE
T ss_pred             EEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEc------CCCCcE---eEEEeCCCCC----ceeEEECCCCCEEE
Confidence            23333343 5688999999999999888889999994      332222   3445555444    99999999999665


Q ss_pred             -EEeCCCcEEEEeC
Q 005235          695 -TAGADSVIRLYCH  707 (707)
Q Consensus       695 -s~g~Dg~IrlWdl  707 (707)
                       +...++.|..|++
T Consensus       284 v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          284 VTEHENNAVWKFEW  297 (314)
T ss_dssp             EEETTTTEEEEEEC
T ss_pred             EEeCCCCeEEEEeC
Confidence             4455678888864

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.38  E-value=3.5e-12  Score=149.44  Aligned_cols=225  Identities=14%  Similarity=0.109  Sum_probs=145.0

Q ss_pred             EeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCe-------------EEEEECCCCCchhccccc
Q 005235          394 GSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQD-------------VLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       394 gs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~-------------V~lwd~~~~~~~~~~~~~  459 (707)
                      |+.+.+|++||+.+|+.+..-.. .....+++|+|||. .|+.++.+..             |++|++.++...      
T Consensus       143 G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~------  215 (695)
T 2bkl_A          143 AADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK------  215 (695)
T ss_dssp             TCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG------
T ss_pred             CCceEEEEEEECCCCCCcCCcccCcccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchh------
Confidence            44567899999999986411011 12226899999994 6777766554             555555443110      


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeee-c
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPF-K  537 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~-~  537 (707)
                                      ...++        ....+...+.+++|+|+|++|+.++.++ ....|.+++..++..  ..+ .
T Consensus       216 ----------------~~lv~--------~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~--~~l~~  269 (695)
T 2bkl_A          216 ----------------DTVVH--------ERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF--RLLVK  269 (695)
T ss_dssp             ----------------CEEEE--------CCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC--EEEEE
T ss_pred             ----------------ceEEE--------ecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce--EEeec
Confidence                            00000        0113456788999999999998887654 345777777655543  444 5


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe----CCeEEEEECCCCeE--EEEEeCC--CCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235          538 LHGLPVSSVFHPTRSIFFVST----KKNIRVYDLLKQRL--IKKLETG--LKEVSSIAIHPAGDNLIVGSREGKLCWFDM  609 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s----dg~I~iwDl~~~~~--~~~l~~~--~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl  609 (707)
                      +...+....+ +++.+++.+.    ++.|.+||+.++..  ...+..+  ...+.+++|+ ++.+++++..|+..+||.+
T Consensus       270 ~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          270 GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            5556667777 4555444443    37899999987642  2334433  3458888988 6778888899998888766


Q ss_pred             CCCCcceEEeecC-CCCEEEEEEcCCCCEEE-EEe---CCCcEEEEecc
Q 005235          610 DLSSKPYRVLKCH-PKDITNVAFHRSYPLFA-SCS---DDCTAYVFHGM  653 (707)
Q Consensus       610 ~~~~~~~~~l~~h-~~~I~~vafspdg~lla-Sgs---~Dg~I~Vwd~~  653 (707)
                      +........+..+ ...|..++++|++..|+ +.+   ..++|++||+.
T Consensus       348 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          348 TLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             ETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred             eCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            5333455666655 66788899999998665 222   34789999653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.36  E-value=3.8e-10  Score=117.65  Aligned_cols=222  Identities=13%  Similarity=0.136  Sum_probs=151.5

Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          385 PVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       385 p~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      +..+.++++....+.|..|+..++.. ..+.....+.+++++++|  .++++. ++.|.+|++.++....          
T Consensus        22 ~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG--~l~v~~-~~~l~~~d~~~g~~~~----------   87 (297)
T 3g4e_A           22 EVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSG--GYVATI-GTKFCALNWKEQSAVV----------   87 (297)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTS--SEEEEE-TTEEEEEETTTTEEEE----------
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCC--CEEEEE-CCeEEEEECCCCcEEE----------
Confidence            34556888888899999999988765 456667889999999999  365554 6789999976542110          


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC------ccEEEEEECCCCceeeeee-c
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE------SRAIFMHQLSKKLSHRIPF-K  537 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~------~~~V~Iwdl~~~~~~~~~~-~  537 (707)
                                    +......      .....+..++++++|+++++......      ...-.||.+...... ..+ .
T Consensus        88 --------------~~~~~~~------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~  146 (297)
T 3g4e_A           88 --------------LATVDND------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFD  146 (297)
T ss_dssp             --------------EEECCTT------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEE
T ss_pred             --------------EEecCCC------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEee
Confidence                          0000000      11234788999999997776543210      012344444432222 223 4


Q ss_pred             cCCCeEEEEEeCCCCEEEEEe--CCeEEEEEC--CCCeEE-----EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          538 LHGLPVSSVFHPTRSIFFVST--KKNIRVYDL--LKQRLI-----KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl--~~~~~~-----~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                      .......++|+|+++.|+++.  ++.|.+|++  .++.+.     ..+..+...+..++++++|.+.++....+.|.+||
T Consensus       147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d  226 (297)
T 3g4e_A          147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD  226 (297)
T ss_dssp             EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred             ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence            445678999999999887765  689999997  455432     22222335688999999998888877788899999


Q ss_pred             CCCCCcceEEeecCCCCEEEEEEc-CCCCEEEEEe
Q 005235          609 MDLSSKPYRVLKCHPKDITNVAFH-RSYPLFASCS  642 (707)
Q Consensus       609 l~~~~~~~~~l~~h~~~I~~vafs-pdg~llaSgs  642 (707)
                      ..++ +.+..+..+...+++++|. |++..|+.++
T Consensus       227 ~~tG-~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          227 PVTG-KRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             TTTC-CEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CCCc-eEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            9877 6777888777789999998 8877554443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.33  E-value=4.6e-10  Score=116.94  Aligned_cols=224  Identities=13%  Similarity=0.131  Sum_probs=148.1

Q ss_pred             CcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          418 EAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .-..+..|+|++. .|+.+. .++.|..|++.++.                         +..|           .....
T Consensus        13 ~~~Egp~w~~~~~-~l~~~d~~~~~i~~~d~~~~~-------------------------~~~~-----------~~~~~   55 (297)
T 3g4e_A           13 RCGESPVWEEVSN-SLLFVDIPAKKVCRWDSFTKQ-------------------------VQRV-----------TMDAP   55 (297)
T ss_dssp             SBEEEEEEETTTT-EEEEEETTTTEEEEEETTTCC-------------------------EEEE-----------ECSSC
T ss_pred             ccccCCeEECCCC-EEEEEECCCCEEEEEECCCCc-------------------------EEEE-----------eCCCc
Confidence            3456889999663 444444 56788888876541                         1122           33567


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec-----cCCCeEEEEEeCCCCEEEEEe-C---------Ce
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK-----LHGLPVSSVFHPTRSIFFVST-K---------KN  561 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~-----~~~~V~~v~fspd~~~l~v~s-d---------g~  561 (707)
                      +.+++++++|+++++.  +.   .|.+||..++... ....     ....+..++++|+|.++++.. .         ..
T Consensus        56 ~~~i~~~~dG~l~v~~--~~---~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~  129 (297)
T 3g4e_A           56 VSSVALRQSGGYVATI--GT---KFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ  129 (297)
T ss_dssp             EEEEEEBTTSSEEEEE--TT---EEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred             eEEEEECCCCCEEEEE--CC---eEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence            8999999999965554  33   8999999877653 2221     123578899999999766543 2         22


Q ss_pred             EEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEE-EEECCCcEEEEECC--CCC----cceEEeecCCCCEEEEEEcC
Q 005235          562 IRVYDLLK-QRLIKKLETGLKEVSSIAIHPAGDNLI-VGSREGKLCWFDMD--LSS----KPYRVLKCHPKDITNVAFHR  633 (707)
Q Consensus       562 I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg~~L~-sGs~Dg~I~vwDl~--~~~----~~~~~l~~h~~~I~~vafsp  633 (707)
                      ..||.+.. ++... +..+....+.++|+|+|+.|+ +.+.++.|.+||++  ++.    +.+..+..+......+++.+
T Consensus       130 ~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~  208 (297)
T 3g4e_A          130 GALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA  208 (297)
T ss_dssp             EEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT
T ss_pred             cEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC
Confidence            34454432 33332 333335578999999998775 45567889999984  331    11222333445688999999


Q ss_pred             CCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc-CCCCEEEEEeC
Q 005235          634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH-PRQPWLFTAGA  698 (707)
Q Consensus       634 dg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs-pdg~~L~s~g~  698 (707)
                      +|.+.++....+.|.+|      +..++..   +..+..+...    +++++|. |++..|+.++.
T Consensus       209 ~G~lwva~~~~~~v~~~------d~~tG~~---~~~i~~p~~~----~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          209 EGKLWVACYNGGRVIRL------DPVTGKR---LQTVKLPVDK----TTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TSCEEEEEETTTEEEEE------CTTTCCE---EEEEECSSSB----EEEEEEESGGGCEEEEEEB
T ss_pred             CCCEEEEEcCCCEEEEE------cCCCceE---EEEEECCCCC----ceEEEEeCCCCCEEEEEcC
Confidence            99988888888899999      4444443   5566666544    9999998 88887765543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.28  E-value=1.3e-08  Score=104.54  Aligned_cols=234  Identities=10%  Similarity=-0.060  Sum_probs=161.2

Q ss_pred             CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK  495 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~  495 (707)
                      ...+.+|++.++|  .++++. .++.|.+|+.. +.                         +..+..        .....
T Consensus        19 ~~~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~-~~-------------------------~~~~~~--------~~~~~   62 (300)
T 2qc5_A           19 DSGPYGITSSEDG--KVWFTQHKANKISSLDQS-GR-------------------------IKEFEV--------PTPDA   62 (300)
T ss_dssp             TCCEEEEEECTTS--CEEEEETTTTEEEEECTT-SC-------------------------EEEEEC--------SSTTC
T ss_pred             CCCcceeeECCCC--CEEEEcCCCCeEEEECCC-Cc-------------------------eEEEEC--------CCCCC
Confidence            4678999999998  466665 46888888865 21                         111111        12235


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI  573 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~  573 (707)
                      .+.++++.++|..+++...++   .|..++.. +......+ .....+.++++.+++.++++.. ++.|..||.. ++..
T Consensus        63 ~~~~i~~~~~g~l~v~~~~~~---~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           63 KVMCLIVSSLGDIWFTENGAN---KIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTT---EEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             cceeEEECCCCCEEEEecCCC---eEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence            688999999999777766555   89999987 44331233 3446789999999998777766 7899999987 6544


Q ss_pred             EE-EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceE-EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          574 KK-LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYR-VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       574 ~~-l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~-~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      .. +......+.+++++++|.++++...++.|..||. .+ .... .+..+...+.+++++++|.++++....+.|.+|+
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence            22 2223456899999999996666666788999998 34 3222 2223445789999999999888777778899994


Q ss_pred             cccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          652 GMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       652 ~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                            . .+...  ...+..+...    +.+++++++|.++++...++.|..|+
T Consensus       216 ------~-~g~~~--~~~~~~~~~~----~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          216 ------T-TGEIS--EYDIPTPNAR----PHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             ------T-TCCEE--EEECSSTTCC----EEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             ------C-CCcEE--EEECCCCCCC----ceEEEECCCCCEEEeccCCCeEEEEC
Confidence                  3 22210  1112223333    89999999998777766678888876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=1.4e-09  Score=119.11  Aligned_cols=237  Identities=9%  Similarity=0.035  Sum_probs=157.8

Q ss_pred             CcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          418 EAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ....+|+|++++  .|+++.. ++.|++|++.++.                         +..+          ......
T Consensus       131 ~~P~~la~d~~g--~lyv~d~~~~~I~~id~~~g~-------------------------~~~~----------~~~~~~  173 (409)
T 3hrp_A          131 KYMWGIAAVGNN--TVLAYQRDDPRVRLISVDDNK-------------------------VTTV----------HPGFKG  173 (409)
T ss_dssp             CCEEEEEECSTT--EEEEEETTTTEEEEEETTTTE-------------------------EEEE----------EETCCB
T ss_pred             CCceEEEEeCCC--CEEEEecCCCcEEEEECCCCE-------------------------EEEe----------eccCCC
Confidence            367899999998  4555554 5788888875431                         1111          111223


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee----c-cCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF----K-LHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQ  570 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~----~-~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~  570 (707)
                      .. ++|+++|+.|+++..++ ...|.+++....... ..+    . ....+.+++++|++..|+++. ++.|+.||+.++
T Consensus       174 ~~-ia~~~~g~~l~~~d~~~-~~~I~~~d~~~~~~~-~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~  250 (409)
T 3hrp_A          174 GK-PAVTKDKQRVYSIGWEG-THTVYVYMKASGWAP-TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ  250 (409)
T ss_dssp             CB-CEECTTSSEEEEEBSST-TCEEEEEEGGGTTCE-EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC
T ss_pred             Cc-eeEecCCCcEEEEecCC-CceEEEEEcCCCcee-EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC
Confidence            34 99999999998888755 237888887765542 222    2 456778999999655566655 689999999877


Q ss_pred             eEEEE----EeCCCCCe--EEEEEcCC-CCEEEEEECCCcEEEEECCCCCcceEEeecCC---------------CCEEE
Q 005235          571 RLIKK----LETGLKEV--SSIAIHPA-GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP---------------KDITN  628 (707)
Q Consensus       571 ~~~~~----l~~~~~~I--~sl~~spd-g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~---------------~~I~~  628 (707)
                      .....    ..++...-  +.++|+|+ +.++++.+.+++|+.|+.+..   ...+.++.               .....
T Consensus       251 ~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~g  327 (409)
T 3hrp_A          251 EVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNG  327 (409)
T ss_dssp             CEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred             CEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeE
Confidence            53322    11222222  39999995 555666667788999998632   44444432               34789


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCC-----------CCCCeeEEEEcCCCCEEEEE
Q 005235          629 VAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS-----------NGRGVMDCKFHPRQPWLFTA  696 (707)
Q Consensus       629 vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~-----------~~~gV~~l~fspdg~~L~s~  696 (707)
                      ++|+|+|.++++-+ .++.|++|+.      ..+.    +..+.++...           .-.....+++++++.++++-
T Consensus       328 ia~d~dG~lyvad~~~~~~I~~~~~------~~G~----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad  397 (409)
T 3hrp_A          328 MTVDEDGNFYIVDGFKGYCLRKLDI------LDGY----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE  397 (409)
T ss_dssp             EEECTTCCEEEEETTTTCEEEEEET------TTTE----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred             EEEeCCCCEEEEeCCCCCEEEEEEC------CCCE----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence            99999999888888 8899999953      2221    3444444100           00138899999998888888


Q ss_pred             eCCCcEEEEeC
Q 005235          697 GADSVIRLYCH  707 (707)
Q Consensus       697 g~Dg~IrlWdl  707 (707)
                      ..++.|+.+++
T Consensus       398 ~~n~~Ir~i~~  408 (409)
T 3hrp_A          398 AWGKAIRKYAV  408 (409)
T ss_dssp             STTCEEEEEEE
T ss_pred             CCCCeEEEEEe
Confidence            88899988763

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.26  E-value=4.2e-09  Score=111.37  Aligned_cols=221  Identities=11%  Similarity=0.084  Sum_probs=146.5

Q ss_pred             cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235          419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS  498 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~  498 (707)
                      ...+++|+|++...+++...++.|..|++.++                         .+..|           .....+.
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-------------------------~~~~~-----------~~~~~v~   93 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASG-------------------------RKTVH-----------ALPFMGS   93 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-------------------------EEEEE-----------ECSSCEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-------------------------cEEEE-----------ECCCcce
Confidence            34678899986433444445778888887543                         12222           2245789


Q ss_pred             EEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeecc-----CCCeEEEEEeCCCCEEEEEeC-------CeEEEEE
Q 005235          499 SVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKL-----HGLPVSSVFHPTRSIFFVSTK-------KNIRVYD  566 (707)
Q Consensus       499 ~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~-----~~~V~~v~fspd~~~l~v~sd-------g~I~iwD  566 (707)
                      +++|+++|+++++.  ..   .|.+|+..++... .....     ...+.+++++|+|.++++..+       +.|..++
T Consensus        94 ~i~~~~dg~l~v~~--~~---gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           94 ALAKISDSKQLIAS--DD---GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             EEEEEETTEEEEEE--TT---EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             EEEEeCCCeEEEEE--CC---CEEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            99999999877765  23   6999999877653 22221     235789999999997665432       4566666


Q ss_pred             CCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECC--CC-C----cceEEeecCCCCEEEEEEcCCCCEE
Q 005235          567 LLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMD--LS-S----KPYRVLKCHPKDITNVAFHRSYPLF  638 (707)
Q Consensus       567 l~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~--~~-~----~~~~~l~~h~~~I~~vafspdg~ll  638 (707)
                        +++.. .+..+......++|+|+|+.|+++ +.++.|.+||++  ++ .    +.+..+.........+++.++|.++
T Consensus       168 --~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lw  244 (326)
T 2ghs_A          168 --KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW  244 (326)
T ss_dssp             --TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             --CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEE
Confidence              45543 333333457899999999877555 456889999986  33 1    1122233334567889999999988


Q ss_pred             EEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc-CCCCEEEEEeC
Q 005235          639 ASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH-PRQPWLFTAGA  698 (707)
Q Consensus       639 aSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs-pdg~~L~s~g~  698 (707)
                      ++...++.|.+|+      . ++..   +..+..+...    +.+++|+ |++..|+.++.
T Consensus       245 va~~~~~~v~~~d------~-~g~~---~~~i~~~~~~----~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          245 NARWGEGAVDRYD------T-DGNH---IARYEVPGKQ----TTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEETTTEEEEEC------T-TCCE---EEEEECSCSB----EEEEEEESTTSCEEEEEEB
T ss_pred             EEEeCCCEEEEEC------C-CCCE---EEEEECCCCC----cEEEEEecCCCCEEEEEec
Confidence            8877778899994      3 2222   4555555444    9999998 89887755543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.26  E-value=5.8e-09  Score=110.27  Aligned_cols=216  Identities=13%  Similarity=0.029  Sum_probs=146.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      .+.+++++..++.|.+|+..+++.. .+.....|.+++|+|+|  .+++++ ...|.+|++.++...             
T Consensus        60 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg--~l~v~~-~~gl~~~d~~~g~~~-------------  122 (326)
T 2ghs_A           60 SGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDS--KQLIAS-DDGLFLRDTATGVLT-------------  122 (326)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETT--EEEEEE-TTEEEEEETTTCCEE-------------
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCC--eEEEEE-CCCEEEEECCCCcEE-------------
Confidence            3457888888899999999887653 45556789999999999  466655 456888987654221             


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC---CccEEEEEECCCCceeeeee-ccCCCe
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG---ESRAIFMHQLSKKLSHRIPF-KLHGLP  542 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~~~~-~~~~~V  542 (707)
                                  .+.....     ......+.+++++++|+++++.....   ....|..++  .+..  ..+ ......
T Consensus       123 ------------~~~~~~~-----~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~--~~~~~~~~~~  181 (326)
T 2ghs_A          123 ------------LHAELES-----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV--TKLFADISIP  181 (326)
T ss_dssp             ------------EEECSST-----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE--EEEEEEESSE
T ss_pred             ------------EEeeCCC-----CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE--EEeeCCCccc
Confidence                        1100000     01123578899999999776654210   123566666  3433  333 444567


Q ss_pred             EEEEEeCCCCEEEEEe--CCeEEEEECC--CC-e-----EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          543 VSSVFHPTRSIFFVST--KKNIRVYDLL--KQ-R-----LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s--dg~I~iwDl~--~~-~-----~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                      ..++|+|+++.|+++.  ++.|.+||+.  ++ .     .+..+......+.+++++++|.+.++...++.|.+||.. +
T Consensus       182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g  260 (326)
T 2ghs_A          182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G  260 (326)
T ss_dssp             EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C
T ss_pred             CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C
Confidence            8999999999887765  6899999986  55 2     222332233557899999999877777677899999984 4


Q ss_pred             CcceEEeecCCCCEEEEEEc-CCCCEEEEEe
Q 005235          613 SKPYRVLKCHPKDITNVAFH-RSYPLFASCS  642 (707)
Q Consensus       613 ~~~~~~l~~h~~~I~~vafs-pdg~llaSgs  642 (707)
                       +.+..+..+...+++++|+ +++..|+.++
T Consensus       261 -~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          261 -NHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             -CEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             -CEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence             5667777777789999998 8877554444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.26  E-value=4.1e-11  Score=129.60  Aligned_cols=175  Identities=13%  Similarity=0.072  Sum_probs=131.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc---------eee-eeeccCCCeEEEEEeCCCCEEEEEeCCeEEEE
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL---------SHR-IPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVY  565 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~---------~~~-~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iw  565 (707)
                      .+..+++++...+|++|+.+    .+.+|++....         ... ..+...+ |..++|  ++.+|+++.++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~----~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS----KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT----EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC----EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEE
Confidence            68999999999999999986    47779865433         111 1225556 999999  8999999999999999


Q ss_pred             ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q 005235          566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg  645 (707)
                      |+.+......+..+...+.++.+.+.  .+++++.||.|.+||+..+. ...    +...|++++|||+|  ++.|..||
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~-~~~----~~~~Vs~v~WSpkG--~~vg~~dg  182 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS-TKQ----LAQNVTSFDVTNSQ--LAVLLKDR  182 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-EEE----EEESEEEEEECSSE--EEEEETTS
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc-ccc----ccCCceEEEEcCCc--eEEEEcCC
Confidence            99876555566667777888777654  49999999999999998663 322    34689999999999  67899999


Q ss_pred             cEEEEecccccCCCCCCcccceEEe------e---CCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEIL------R---GHTSSNGRGVMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l------~---gh~~~~~~gV~~l~fspdg~~L~s~g  697 (707)
                      +|++|+...      ... ...+++      .   +|...    |.+|.|.+++.+|++-+
T Consensus       183 ~i~~~~~~~------~~~-~~k~~I~~Pp~~~~~~~~~~~----V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          183 SFQSFAWRN------GEM-EKQFEFSLPSELEELPVEEYS----PLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             CEEEEEEET------TEE-EEEEEECCCHHHHTSCTTTSE----EEEEEESSSSEEEEEEE
T ss_pred             cEEEEcCCC------ccc-cccceecCCcccccccCCCee----EEEEEEecCCeEEEEEc
Confidence            999995421      110 001223      2   35544    99999999999998744

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.24  E-value=9.8e-10  Score=120.35  Aligned_cols=262  Identities=11%  Similarity=0.027  Sum_probs=166.4

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      ++|.+.|..+++.+.++.....- .++++||+. .++++.          .++.|.++|+.+....              
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk-~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv--------------  162 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGS-FFAQASTVFERIARGKRTDYVEVFDPVTFLPI--------------  162 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEE--------------
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECCCCC-EEEEEeccccccccCCCCCEEEEEECCCCcEE--------------
Confidence            79999999999999999985444 999999994 566655          3568888887765321              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVF  547 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~f  547 (707)
                                ....+.+..   ..........++|+|+|++++++.... .+.|.+.|+.+.+.. ..+...+   +...
T Consensus       163 ----------~~I~v~g~~---r~~~g~~P~~~~~spDGk~lyV~n~~~-~~~VsVID~~t~kvv-~~I~v~g---~~~~  224 (426)
T 3c75_H          163 ----------ADIELPDAP---RFLVGTYQWMNALTPDNKNLLFYQFSP-APAVGVVDLEGKTFD-RMLDVPD---CYHI  224 (426)
T ss_dssp             ----------EEEEETTCC---CCCBSCCGGGSEECTTSSEEEEEECSS-SCEEEEEETTTTEEE-EEEECCS---EEEE
T ss_pred             ----------EEEECCCcc---ccccCCCcceEEEcCCCCEEEEEecCC-CCeEEEEECCCCeEE-EEEEcCC---ceee
Confidence                      000000000   000123456789999999999887431 238999999998876 5563222   1334


Q ss_pred             eCCC-CEEEEEe-CCeEEEEECCCCeEEEEE----eCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEECCCCCc-ceEEe
Q 005235          548 HPTR-SIFFVST-KKNIRVYDLLKQRLIKKL----ETGLKEV-SSIAIHPAGDNLIVGSREGKLCWFDMDLSSK-PYRVL  619 (707)
Q Consensus       548 spd~-~~l~v~s-dg~I~iwDl~~~~~~~~l----~~~~~~I-~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~-~~~~l  619 (707)
                      .|++ ..+++.+ ||.+.+.++.+++.....    .....++ ..+.+.+++..++..+..+.|.+.|+..... ....+
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~  304 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPI  304 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCE
T ss_pred             ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeee
Confidence            4443 3334444 888888888666554322    1122221 2357799999888888899999999964421 01111


Q ss_pred             ec----------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235          620 KC----------HPKDITNVAFHRSYPLFASCSD----------DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR  679 (707)
Q Consensus       620 ~~----------h~~~I~~vafspdg~llaSgs~----------Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~  679 (707)
                      .-          .......++|+|++..++.+..          .+.|.|+|      +.+...   +..+.....    
T Consensus       305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID------~~T~kv---v~~I~vg~~----  371 (426)
T 3c75_H          305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN------AETGER---INKIELGHE----  371 (426)
T ss_dssp             ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE------TTTCCE---EEEEEEEEE----
T ss_pred             eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE------CCCCeE---EEEEECCCC----
Confidence            10          0111223689999886555432          34799994      445544   444433222    


Q ss_pred             CeeEEEEcCCCC-EEEEEe-CCCcEEEEeC
Q 005235          680 GVMDCKFHPRQP-WLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       680 gV~~l~fspdg~-~L~s~g-~Dg~IrlWdl  707 (707)
                       ..+++|+|+++ .|+++. .++.|.++|+
T Consensus       372 -P~gia~spDg~~~lyv~n~~s~~VsVID~  400 (426)
T 3c75_H          372 -IDSINVSQDAEPLLYALSAGTQTLHIYDA  400 (426)
T ss_dssp             -ECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             -cCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence             78999999999 888888 5999999984

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.23  E-value=3.4e-09  Score=114.29  Aligned_cols=273  Identities=13%  Similarity=0.039  Sum_probs=166.5

Q ss_pred             CCCcEEEEEeC-----CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCCC
Q 005235          386 VACYLEYKGST-----DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGLG  450 (707)
Q Consensus       386 ~~~~~l~sgs~-----DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~~  450 (707)
                      .++..+|....     ++.|.+.|..+++.+.++....... ++++|||. .++++.          .++.|.+||+.+.
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~-~lyVan~~~~r~~~G~~~~~VsviD~~t~  119 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGS-FIAHASTVFSRIARGERTDYVEVFDPVTL  119 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCC
Confidence            34456666544     6899999999999999998844445 99999994 566554          2567888887765


Q ss_pred             CchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc
Q 005235          451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL  530 (707)
Q Consensus       451 ~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~  530 (707)
                      ...                        ..+....+.   ..........++|+|+|++++++.... .+.|.++|+.+++
T Consensus       120 ~v~------------------------~~I~v~~g~---r~~~g~~P~~~a~spDGk~lyVan~~~-~~~VsVID~~t~~  171 (386)
T 3sjl_D          120 LPT------------------------ADIELPDAP---RFLVGTYPWMTSLTPDGKTLLFYQFSP-APAVGVVDLEGKA  171 (386)
T ss_dssp             CEE------------------------EEEEETTCC---CCCBSCCGGGEEECTTSSEEEEEECSS-SCEEEEEETTTTE
T ss_pred             eEE------------------------EEEECCCcc---ccccCCCCceEEEcCCCCEEEEEEcCC-CCeEEEEECCCCc
Confidence            321                        111000000   000123456799999999998886421 2399999999998


Q ss_pred             eeeeeeccCCCeEEEEEeCC-CCEEEEEe-CCeEEEEECCC-CeEEEEEeCC----CCCeE-EEEE-cCCCCEEEEEECC
Q 005235          531 SHRIPFKLHGLPVSSVFHPT-RSIFFVST-KKNIRVYDLLK-QRLIKKLETG----LKEVS-SIAI-HPAGDNLIVGSRE  601 (707)
Q Consensus       531 ~~~~~~~~~~~V~~v~fspd-~~~l~v~s-dg~I~iwDl~~-~~~~~~l~~~----~~~I~-sl~~-spdg~~L~sGs~D  601 (707)
                      .. ..+...+   |..+.|. ...+++.+ ||.+.+.++.+ ++...+....    ...+. ...| .++|++++ .+.+
T Consensus       172 vv-~tI~v~g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~  246 (386)
T 3sjl_D          172 FK-RMLDVPD---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYT  246 (386)
T ss_dssp             EE-EEEECCS---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTT
T ss_pred             EE-EEEECCC---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCC
Confidence            77 6663222   1222343 34444444 88888888876 5543322111    12221 2355 36775444 6678


Q ss_pred             CcEEEEECCCCC-cceEEee----------cCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccCCCC
Q 005235          602 GKLCWFDMDLSS-KPYRVLK----------CHPKDITNVAFHRSYPLFASCSD----------DCTAYVFHGMVYSDLNQ  660 (707)
Q Consensus       602 g~I~vwDl~~~~-~~~~~l~----------~h~~~I~~vafspdg~llaSgs~----------Dg~I~Vwd~~~~~Dl~~  660 (707)
                      |+|+++|+.... .....+.          -....+..+++++++..++.+..          ...|.++      |+.+
T Consensus       247 g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi------D~~t  320 (386)
T 3sjl_D          247 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL------DAKT  320 (386)
T ss_dssp             SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE------ETTT
T ss_pred             CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE------ECCC
Confidence            999999997542 1222221          01123345788999887766542          2468888      5555


Q ss_pred             CCcccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEE-eCCCcEEEEeC
Q 005235          661 NPLIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTA-GADSVIRLYCH  707 (707)
Q Consensus       661 ~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~-g~Dg~IrlWdl  707 (707)
                      ...   ++.+....     .+.+|+|++|++ .|+++ ..++.|.++|.
T Consensus       321 ~kv---~~~i~vg~-----~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          321 GER---LAKFEMGH-----EIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             CCE---EEEEEEEE-----EECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             CeE---EEEEECCC-----CcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            554   34433221     188999999996 67665 55899999884

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.23  E-value=2.3e-10  Score=123.76  Aligned_cols=181  Identities=10%  Similarity=0.058  Sum_probs=131.1

Q ss_pred             cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeE
Q 005235          419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVS  498 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~  498 (707)
                      .++.+++++..  .+++++....+.+|++..........                .+.        -.......+.+ |+
T Consensus        39 ~~nlLais~~~--gll~a~~~~~l~v~~~~~l~~~~~~~----------------~~~--------~~~~~~~~lp~-V~   91 (388)
T 1xip_A           39 SLQNLDISNSK--SLFVAASGSKAVVGELQLLRDHITSD----------------STP--------LTFKWEKEIPD-VI   91 (388)
T ss_dssp             CCBCEEEETTT--TEEEEEETTEEEEEEHHHHHHHHHSS----------------SCC--------CCCSEEEECTT-EE
T ss_pred             cccEEEEcCCC--CEEEEeCCCEEEEEEhhHhhhhhccc----------------ccc--------ccceEEeeCCC-ee
Confidence            68899999998  46666666688889865432111100                000        00112335667 99


Q ss_pred             EEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEE
Q 005235          499 SVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       499 ~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l  576 (707)
                      +|+|  ++++|+++ .++   .|++||+...... ..+ .+...+.++.+.+..  +++++ ||.|.+||+.++.... +
T Consensus        92 ~l~f--d~~~L~v~-~~~---~l~v~dv~sl~~~-~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-~  161 (388)
T 1xip_A           92 FVCF--HGDQVLVS-TRN---ALYSLDLEELSEF-RTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-L  161 (388)
T ss_dssp             EEEE--ETTEEEEE-ESS---EEEEEESSSTTCE-EEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-E
T ss_pred             EEEE--CCCEEEEE-cCC---cEEEEEchhhhcc-CccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-c
Confidence            9999  99999998 556   9999999877654 445 666678887776543  66655 9999999999887653 2


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc--eEEe------e---cCCCCEEEEEEcCCCCEEEEEe
Q 005235          577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP--YRVL------K---CHPKDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       577 ~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~--~~~l------~---~h~~~I~~vafspdg~llaSgs  642 (707)
                         ...|+|++|||+|  +++|..||++.+|+.+.. ..  .+++      .   +|...|.+|.|.+++.+|++-+
T Consensus       162 ---~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~-~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          162 ---AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             ---EESEEEEEECSSE--EEEEETTSCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             ---cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCc-cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence               3579999999999  788999999999998765 32  4455      2   4788899999999999888643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.23  E-value=7e-09  Score=113.50  Aligned_cols=224  Identities=10%  Similarity=-0.002  Sum_probs=153.2

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC--eEEEEECCCCCchhcccccceeee
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ--DVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~--~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      ++.++++...++.|++||..++............. ++|+|+++ .|+++..++  .|.+|+...+..            
T Consensus       141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~------------  206 (409)
T 3hrp_A          141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWA------------  206 (409)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTC------------
T ss_pred             CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCCce------------
Confidence            44577777778999999999888776665544444 99999994 566666544  777777543211            


Q ss_pred             cccccccCCCCcEEEEecCCccceEEec-cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee----e-cc
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLR-HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP----F-KL  538 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~-h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~----~-~~  538 (707)
                                  ....       ..... ....+.+++++|++..|+++..++   .|..|+..+.... ..    . ..
T Consensus       207 ------------~~~~-------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~---~I~~~d~~~~~~~-~~~~~~~~g~  263 (409)
T 3hrp_A          207 ------------PTRI-------GQLGSTFSGKIGAVALDETEEWLYFVDSNK---NFGRFNVKTQEVT-LIKQLELSGS  263 (409)
T ss_dssp             ------------EEEE-------EECCTTSCSCCCBCEECTTSSEEEEECTTC---EEEEEETTTCCEE-EEEECCCCSC
T ss_pred             ------------eEEe-------eeccchhcCCcEEEEEeCCCCeEEEEECCC---cEEEEECCCCCEE-EEecccccCC
Confidence                        0000       00112 345678899999555565565555   9999999877643 22    2 22


Q ss_pred             CCCe-E-EEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC---------------CCeEEEEEcCCCCEEEEEE
Q 005235          539 HGLP-V-SSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGL---------------KEVSSIAIHPAGDNLIVGS  599 (707)
Q Consensus       539 ~~~V-~-~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~---------------~~I~sl~~spdg~~L~sGs  599 (707)
                      .+.. . .++|+|++..|+++.  .+.|+.|+....  +..+.++.               .....|+++|+|.++++-+
T Consensus       264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            2222 3 999999766666655  689999997644  33333321               4588999999999778777


Q ss_pred             -CCCcEEEEECCCCCcceEEeecC---------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          600 -REGKLCWFDMDLSSKPYRVLKCH---------------PKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       600 -~Dg~I~vwDl~~~~~~~~~l~~h---------------~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                       .+++|+.||+..+ . +.++.++               -.....|++++++.++++-..++.|+.+.
T Consensus       342 ~~~~~I~~~~~~~G-~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          342 FKGYCLRKLDILDG-Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             TTTCEEEEEETTTT-E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             CCCCEEEEEECCCC-E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence             8899999997655 3 4555554               23588999999998888888888888773

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.22  E-value=7e-10  Score=114.78  Aligned_cols=179  Identities=12%  Similarity=0.053  Sum_probs=140.6

Q ss_pred             CCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccC-CCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCC-C
Q 005235          505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLH-GLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGL-K  581 (707)
Q Consensus       505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~-~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~-~  581 (707)
                      .++.|++++.++   .|.+||..+++.. ..+ .+. ..+.+++++|+|++|+ +.++.|..||. +++.+.++..+. .
T Consensus         4 ~~~~lv~~~~~~---~v~~~d~~tG~~~-w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~   77 (276)
T 3no2_A            4 PQHLLVGGSGWN---KIAIINKDTKEIV-WEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC   77 (276)
T ss_dssp             CCEEEEECTTCS---EEEEEETTTTEEE-EEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred             CCcEEEeeCCCC---EEEEEECCCCeEE-EEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence            467888888877   9999999899887 777 333 4789999999999888 55788999999 899999998753 4


Q ss_pred             CeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCcceEEeec------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235          582 EVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSSKPYRVLKC------HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV  654 (707)
Q Consensus       582 ~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~~~~~~l~~------h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~  654 (707)
                      .+.++.+.|+|++|++.+. +++|..+|.+ + +.+..+..      +......+++.++|.++++.+.++.|.+|    
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~----  151 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNMK-G-EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI----  151 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECTT-S-CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE----
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeCC-C-CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE----
Confidence            6889999999999999887 7788888863 4 55555542      11245567889999999999999999999    


Q ss_pred             ccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          655 YSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       655 ~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                        |.. +..   +..+..+..     +.++.+.+++..|++++.++.|..+|
T Consensus       152 --d~~-G~~---~w~~~~~~~-----~~~~~~~~~g~~~v~~~~~~~v~~~d  192 (276)
T 3no2_A          152 --APN-GQL---LNSVKLSGT-----PFSSAFLDNGDCLVACGDAHCFVQLN  192 (276)
T ss_dssp             --CTT-SCE---EEEEECSSC-----CCEEEECTTSCEEEECBTTSEEEEEC
T ss_pred             --CCC-CCE---EEEEECCCC-----ccceeEcCCCCEEEEeCCCCeEEEEe
Confidence              443 333   555555432     67788899999999988888888776

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.19  E-value=3.5e-09  Score=110.59  Aligned_cols=227  Identities=16%  Similarity=0.146  Sum_probs=149.1

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .....+++|+|+++..+++...++.|..|+.. +                         .+..          +..+...
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-------------------------~~~~----------~~~~~~~   87 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-------------------------TVDV----------LLDATAF   87 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-------------------------CEEE----------EEESCSC
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-------------------------CEEE----------EeCCCCc
Confidence            55678899999994234444456788888752 2                         1111          2234567


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-c----cCCCeEEEEEeCCCCEEEE----Ee---------
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K----LHGLPVSSVFHPTRSIFFV----ST---------  558 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~----~~~~V~~v~fspd~~~l~v----~s---------  558 (707)
                      +..++++++|+++++...++   .|.+|+.. +... ... .    ....+..++++|+|.++++    ++         
T Consensus        88 ~~gl~~d~dG~l~v~~~~~~---~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~  162 (305)
T 3dr2_A           88 TNGNAVDAQQRLVHCEHGRR---AITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA  162 (305)
T ss_dssp             EEEEEECTTSCEEEEETTTT---EEEEECTT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred             cceeeECCCCCEEEEECCCC---EEEEECCC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence            88999999999766655444   89999986 4332 111 1    1235678999999998875    32         


Q ss_pred             -----CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC------CcEEEEECCCCCcce--EEe-ecCCC
Q 005235          559 -----KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE------GKLCWFDMDLSSKPY--RVL-KCHPK  624 (707)
Q Consensus       559 -----dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D------g~I~vwDl~~~~~~~--~~l-~~h~~  624 (707)
                           .+.|..||..+++.....  +......++|+|+|+.|+++...      +.|.+|++.... ..  ..+ .....
T Consensus       163 ~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~  239 (305)
T 3dr2_A          163 DPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDG  239 (305)
T ss_dssp             CCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSS
T ss_pred             ccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCC
Confidence                 256888888666544333  33567899999999988877665      689999987542 11  111 11233


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235          625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                      ....+++.++|++.++. .+| |.+|+      . .+.   .+..+..+. .    +.+++|+|++..|+.++.++..++
T Consensus       240 ~pdgi~~d~~G~lwv~~-~~g-v~~~~------~-~g~---~~~~~~~~~-~----~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          240 LPDGFCVDRGGWLWSSS-GTG-VCVFD------S-DGQ---LLGHIPTPG-T----ASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             CCCSEEECTTSCEEECC-SSE-EEEEC------T-TSC---EEEEEECSS-C----CCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCCeEEECCCCCEEEec-CCc-EEEEC------C-CCC---EEEEEECCC-c----eeEEEEeCCCCEEEEEcCCeEEEE
Confidence            45678999999966554 444 88994      3 222   244555443 2    899999999999988887765554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.18  E-value=1.7e-09  Score=127.63  Aligned_cols=198  Identities=9%  Similarity=-0.036  Sum_probs=134.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCc--cEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CC----------
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGES--RAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KK----------  560 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~--~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg----------  560 (707)
                      ...+..++|||+|++||.++.+++.  ..|++||+.++......+ ....+..++|+|+ +.|+.++ ++          
T Consensus       162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            3467899999999999988765433  579999999987652222 1222357899999 8888776 43          


Q ss_pred             ----eEEEEECCCCe----EEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCCCcc-eEEeecCCCCE
Q 005235          561 ----NIRVYDLLKQR----LIKKLETGLKEVSSIAIHPAGDNLIVGSREG-----KLCWFDMDLSSKP-YRVLKCHPKDI  626 (707)
Q Consensus       561 ----~I~iwDl~~~~----~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg-----~I~vwDl~~~~~~-~~~l~~h~~~I  626 (707)
                          .|++|++.++.    ++.....+...+.++.|||+|++|++.+.++     .|++||+.++... ...+..+...+
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  319 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ  319 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence                38999998764    3322222333689999999999998887654     7999999865223 56666666666


Q ss_pred             EEEEEcCCCCEEEEEeCC----CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235          627 TNVAFHRSYPLFASCSDD----CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI  702 (707)
Q Consensus       627 ~~vafspdg~llaSgs~D----g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I  702 (707)
                      .... +|+|..|+..+.+    +.|.+|++.      +.. ......+..+...    +.+++|+ ++.++++...|+..
T Consensus       320 ~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~------~~~-~~~~~l~~~~~~~----l~~~~~~-~~~lv~~~~~dg~~  386 (741)
T 1yr2_A          320 WDFV-DGVGDQLWFVSGDGAPLKKIVRVDLS------GST-PRFDTVVPESKDN----LESVGIA-GNRLFASYIHDAKS  386 (741)
T ss_dssp             EEEE-EEETTEEEEEECTTCTTCEEEEEECS------SSS-CEEEEEECCCSSE----EEEEEEE-BTEEEEEEEETTEE
T ss_pred             EEEE-eccCCEEEEEECCCCCCCEEEEEeCC------CCc-cccEEEecCCCCe----EEEEEEE-CCEEEEEEEECCEE
Confidence            6554 4889988877764    348888543      211 0112233334333    6778887 56678888999998


Q ss_pred             EEEe
Q 005235          703 RLYC  706 (707)
Q Consensus       703 rlWd  706 (707)
                      +||.
T Consensus       387 ~l~~  390 (741)
T 1yr2_A          387 QVLA  390 (741)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.12  E-value=4.9e-09  Score=122.71  Aligned_cols=192  Identities=14%  Similarity=0.175  Sum_probs=127.5

Q ss_pred             EEEEEcCCCCEEEEEeCCC----------CccEEEEEECCCCceee-eeec----cCCCeEEEEEeCCCCEEEEEe----
Q 005235          498 SSVEWHRRGDYLSTVMPAG----------ESRAIFMHQLSKKLSHR-IPFK----LHGLPVSSVFHPTRSIFFVST----  558 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg----------~~~~V~Iwdl~~~~~~~-~~~~----~~~~V~~v~fspd~~~l~v~s----  558 (707)
                      ..++|+ ||+.|+.++.+.          ....|.+|++.+..... ..+.    +...+..+.|+|+|++|+...    
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            567899 999999998773          23579999998876431 2232    234578899999999887643    


Q ss_pred             -CCeEEEEECCCCe-EEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C---CcEEEEECCCCCc-ceEEeecCCCCEEEEEE
Q 005235          559 -KKNIRVYDLLKQR-LIKKLETGLKEVSSIAIHPAGDNLIVGSR-E---GKLCWFDMDLSSK-PYRVLKCHPKDITNVAF  631 (707)
Q Consensus       559 -dg~I~iwDl~~~~-~~~~l~~~~~~I~sl~~spdg~~L~sGs~-D---g~I~vwDl~~~~~-~~~~l~~h~~~I~~vaf  631 (707)
                       ...|+++|+.++. ....+..+....... ++++|..|+..+. +   +.|..+|+..+.. ..+.+..|...+.  .|
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~  333 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV  333 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence             2589999998763 345666665655555 6667766655543 3   5799999987532 2456777776665  89


Q ss_pred             cCCCCEEEEEe-CCC--cEEEEecccccCCCCCCcccceEEeeC-CCCCCCCCeeEEEEcCCCCEEEEEeCC----CcEE
Q 005235          632 HRSYPLFASCS-DDC--TAYVFHGMVYSDLNQNPLIVPLEILRG-HTSSNGRGVMDCKFHPRQPWLFTAGAD----SVIR  703 (707)
Q Consensus       632 spdg~llaSgs-~Dg--~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h~~~~~~gV~~l~fspdg~~L~s~g~D----g~Ir  703 (707)
                      ++++..|+... .++  .|++|+      +....    ...+.. +...    +..+.++|++..|+....+    ++|.
T Consensus       334 s~~g~~lv~~~~~~g~~~l~~~d------~~g~~----~~~l~~p~~~~----~~~~~~~~d~~~l~~~~ss~~tP~~l~  399 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATARVEQFD------YEGKR----VREVALPGLGS----VSGFNGKHDDPALYFGFENYAQPPTLY  399 (693)
T ss_dssp             EEETTEEEEEEEETTEEEEEEEC------TTSCE----EEEECCSSSSE----EEECCCCTTCSCEEEEEECSSSCCEEE
T ss_pred             EEECCEEEEEEEECCeeEEEEEE------CCCCe----eEEeecCCCce----EEeeecCCCCCEEEEEecCCCCCCEEE
Confidence            99998776655 454  577774      33221    233322 2222    7778888888876555444    7788


Q ss_pred             EEeC
Q 005235          704 LYCH  707 (707)
Q Consensus       704 lWdl  707 (707)
                      .||+
T Consensus       400 ~~d~  403 (693)
T 3iuj_A          400 RFEP  403 (693)
T ss_dssp             EECT
T ss_pred             EEEC
Confidence            8774

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.10  E-value=8.7e-08  Score=102.75  Aligned_cols=288  Identities=11%  Similarity=0.051  Sum_probs=176.4

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecC----------CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIG----------EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR  457 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~----------~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~  457 (707)
                      ...++.++.++.|..+|..+|+.+..+...          ..+.+.....++  .+++++.++.|..+|..++.......
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG--HVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETT--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCC--EEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            357888889999999999999998877762          233333233344  68888889999999999886532211


Q ss_pred             cc-ceeee----cccccccCCCCcEEEEecCCccceEEeccCCCe------EEEEEcCCCCEEEEEeCCCCccEEEEEEC
Q 005235          458 VK-DLLHV----ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV------SSVEWHRRGDYLSTVMPAGESRAIFMHQL  526 (707)
Q Consensus       458 ~~-~v~~~----~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V------~~v~~sp~g~~lat~s~dg~~~~V~Iwdl  526 (707)
                      .. .+...    .-.+..+..++.+..++..++...-.......+      ......  +..+++++.++   .|..+|.
T Consensus       131 ~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g---~l~~~d~  205 (376)
T 3q7m_A          131 VAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNG---RVSAVLM  205 (376)
T ss_dssp             CSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTT---EEEEEET
T ss_pred             CCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCC---EEEEEEC
Confidence            11 11100    001455667888888888766543322222221      112222  45677777766   9999999


Q ss_pred             CCCceeeeeeccCCC-----------e-EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC
Q 005235          527 SKKLSHRIPFKLHGL-----------P-VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD  593 (707)
Q Consensus       527 ~~~~~~~~~~~~~~~-----------V-~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~  593 (707)
                      .+++.. ..+.....           + ....+  .+..+++++ ++.|..+|+.+++.+......  ...++..  ++.
T Consensus       206 ~tG~~~-w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~  278 (376)
T 3q7m_A          206 EQGQMI-WQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGN  278 (376)
T ss_dssp             TTCCEE-EEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETT
T ss_pred             CCCcEE-EEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECC
Confidence            888765 44311100           1 11111  245566666 899999999999888776533  3455555  367


Q ss_pred             EEEEEECCCcEEEEECCCCCcceEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC
Q 005235          594 NLIVGSREGKLCWFDMDLSSKPYRVLK-CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG  672 (707)
Q Consensus       594 ~L~sGs~Dg~I~vwDl~~~~~~~~~l~-~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g  672 (707)
                      .|++++.++.|..+|..++ +...... .....+.....  .+..|+.++.+|.|.++|.      .++..   +.....
T Consensus       279 ~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~------~tG~~---~~~~~~  346 (376)
T 3q7m_A          279 RIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINV------EDGRF---VAQQKV  346 (376)
T ss_dssp             EEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEET------TTCCE---EEEEEC
T ss_pred             EEEEEcCCCeEEEEECCCC-cEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEEC------CCCcE---EEEEec
Confidence            8888999999999999988 4443333 12222233333  2467888889999999954      34433   333332


Q ss_pred             CCCCCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          673 HTSSNGRGV-MDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       673 h~~~~~~gV-~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ....    + ..+..  .+..|+.++.+|.|..|+.
T Consensus       347 ~~~~----~~~~~~~--~~~~l~v~~~~G~l~~~~~  376 (376)
T 3q7m_A          347 DSSG----FQTEPVA--ADGKLLIQAKDGTVYSITR  376 (376)
T ss_dssp             CTTC----BCSCCEE--ETTEEEEEBTTSCEEEEEC
T ss_pred             CCCc----ceeCCEE--ECCEEEEEeCCCEEEEEeC
Confidence            1111    2 12222  2457888999999999873

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.08  E-value=1.1e-07  Score=102.69  Aligned_cols=215  Identities=12%  Similarity=0.066  Sum_probs=141.2

Q ss_pred             CCCcEEEEeCCCCeEEEEEecC--------CcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhc-ccccceeee
Q 005235          396 TDGTVRIWEVESGRCLRVLEIG--------EAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQ-RRVKDLLHV  464 (707)
Q Consensus       396 ~DgtVrIWd~~tg~~l~~l~~~--------~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~-~~~~~v~~~  464 (707)
                      .+++|.+||..+++.+..+...        .....++|+|||. .|+++..  ++.|.++| .++..... .........
T Consensus        95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~  172 (373)
T 2mad_H           95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHI  172 (373)
T ss_pred             CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEE
Confidence            4788999999999988877653        2356899999994 6666653  47899999 87754211 111111100


Q ss_pred             -ccc---ccccCCCCcEEEEecCCccceEEe------ccCCC-eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235          465 -ETP---TAPDDNMASIVSWLQHDKLDGIRL------RHFKM-VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       465 -~~~---~~~~~~d~~i~iW~~~~~~~~~~~------~h~~~-V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~  533 (707)
                       ...   ++..+.++.+..++. ........      ....+ .....+.+++..++..+..+   .+.+.|+.......
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~v~vid~~~~~~~v  248 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG---KILQADISAAGATN  248 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc---eEEEEeccCCcceE
Confidence             000   344556788888887 44332111      11111 12345666666655555555   89999987543210


Q ss_pred             -eeec-----------cCCCeEEEEEeCCCCEEEEEeC-----------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcC
Q 005235          534 -IPFK-----------LHGLPVSSVFHPTRSIFFVSTK-----------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHP  590 (707)
Q Consensus       534 -~~~~-----------~~~~V~~v~fspd~~~l~v~sd-----------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp  590 (707)
                       ..+.           .......++|+|++..++++.+           +.|.++|+.+++.+.++..+ ....+++|+|
T Consensus       249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~  327 (373)
T 2mad_H          249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQ  327 (373)
T ss_pred             eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECC
Confidence             1221           1233455889999999888642           47999999999999999765 4689999999


Q ss_pred             CCC-EEEEEE-CCCcEEEEECCCCCcceEE
Q 005235          591 AGD-NLIVGS-REGKLCWFDMDLSSKPYRV  618 (707)
Q Consensus       591 dg~-~L~sGs-~Dg~I~vwDl~~~~~~~~~  618 (707)
                      +|+ +++++. .++.|.++|+.++ +.++.
T Consensus       328 Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~  356 (373)
T 2mad_H          328 DGGPDLYALSAGTEVLHIYDAGAG-DQDQS  356 (373)
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence            999 777777 4899999999987 55655

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.06  E-value=9.4e-09  Score=120.28  Aligned_cols=229  Identities=12%  Similarity=0.091  Sum_probs=138.0

Q ss_pred             eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235          395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM  474 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d  474 (707)
                      +...+|+|||+.+|+.+..........+++|+ |++ .|+.++.+..      ..+..                ......
T Consensus       152 ~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~-~l~y~~~~~~------~~~~~----------------~~~~~~  207 (693)
T 3iuj_A          152 SDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNE-GFFYSSYDKP------DGSEL----------------SARTDQ  207 (693)
T ss_dssp             CCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTT-EEEEEESSCC------C-----------------------CCC
T ss_pred             CceEEEEEEECCCCCCCccccCCceeccEEEe-CCC-EEEEEEecCc------ccccc----------------cccCCC
Confidence            34467999999999876532111113578999 984 5766666532      00000                000011


Q ss_pred             CcEEEEecCCccc--eEE---ec-cCCCeEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          475 ASIVSWLQHDKLD--GIR---LR-HFKMVSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       475 ~~i~iW~~~~~~~--~~~---~~-h~~~V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                      ..|.+|++.+...  ..+   .. |...+..+.|+|+|++|+.....+ ..+.|.++++.++......+ .+....... 
T Consensus       208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-  286 (693)
T 3iuj_A          208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-  286 (693)
T ss_dssp             CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-
T ss_pred             cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-
Confidence            2334444432221  111   12 344578899999999886655433 33599999998764221455 555555555 


Q ss_pred             EeCCCCEEEEEe--C---CeEEEEECCCCeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCCCcce
Q 005235          547 FHPTRSIFFVST--K---KNIRVYDLLKQRL--IKKLETGLKEVSSIAIHPAGDNLIVGSREG---KLCWFDMDLSSKPY  616 (707)
Q Consensus       547 fspd~~~l~v~s--d---g~I~iwDl~~~~~--~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg---~I~vwDl~~~~~~~  616 (707)
                      |++++..|+..+  +   +.|.++|+.++..  .+.+..+...+.  .|++++++|+....++   .|.+||+..+  ..
T Consensus       287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~--~~  362 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK--RV  362 (693)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC--EE
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC--ee
Confidence            566666655544  2   6799999987643  345666666554  8899999888776544   6889998743  34


Q ss_pred             EEee-cCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEec
Q 005235          617 RVLK-CHPKDITNVAFHRSYPLFASCSDD----CTAYVFHG  652 (707)
Q Consensus       617 ~~l~-~h~~~I~~vafspdg~llaSgs~D----g~I~Vwd~  652 (707)
                      ..+. .+...+..+.+++++..|+....+    ++|..|++
T Consensus       363 ~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          363 REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            4443 244567788888888755544433    78888854

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.05  E-value=1.4e-08  Score=109.36  Aligned_cols=231  Identities=13%  Similarity=0.074  Sum_probs=152.0

Q ss_pred             CCCcEEEEeCCCCeEEEEEecC--------CcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhccccc---cee
Q 005235          396 TDGTVRIWEVESGRCLRVLEIG--------EAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQRRVK---DLL  462 (707)
Q Consensus       396 ~DgtVrIWd~~tg~~l~~l~~~--------~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~~~---~v~  462 (707)
                      .+++|.+||..+++.+.++...        .....++|+|||. .++++..  ++.|.++|+.+....-.-...   .+.
T Consensus       107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~  185 (386)
T 3sjl_D          107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF  185 (386)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceee
Confidence            4678999999999999988753        2567899999994 5666653  689999999887542111111   111


Q ss_pred             eeccc-ccccCCCCcEEEEecCC-ccceEEe-ccC----CCe-EEEEEc-CCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235          463 HVETP-TAPDDNMASIVSWLQHD-KLDGIRL-RHF----KMV-SSVEWH-RRGDYLSTVMPAGESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       463 ~~~~~-~~~~~~d~~i~iW~~~~-~~~~~~~-~h~----~~V-~~v~~s-p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~  533 (707)
                      ..... ++..+.||.+...+... ....... .+.    ..+ ....|. ++|+++ ..+.+|   .|.+.|+.+.....
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~-~vs~~g---~V~v~d~~~~~~~v  261 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV-WPTYTG---KIHQIDLSSGDAKF  261 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE-EEBTTS---EEEEEECTTSSCEE
T ss_pred             cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE-EEeCCC---EEEEEECCCCccee
Confidence            11111 34556788888888764 3331111 111    112 124664 566544 456566   99999997664220


Q ss_pred             -eeec-----------cCCCeEEEEEeCCCCEEEEEe-C----------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcC
Q 005235          534 -IPFK-----------LHGLPVSSVFHPTRSIFFVST-K----------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHP  590 (707)
Q Consensus       534 -~~~~-----------~~~~V~~v~fspd~~~l~v~s-d----------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~sp  590 (707)
                       .++.           ..+..+.+++++++..++++. +          +.|.++|+.+++.++++..+ ..+.+|+++|
T Consensus       262 ~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~  340 (386)
T 3sjl_D          262 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQ  340 (386)
T ss_dssp             CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECS
T ss_pred             ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECC
Confidence             1111           123456688899999999874 1          57999999999999998765 4688999999


Q ss_pred             CCC-EEEEEE-CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCC
Q 005235          591 AGD-NLIVGS-REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS  634 (707)
Q Consensus       591 dg~-~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd  634 (707)
                      +|+ +|+++. .++.|.++|..++ +.++++..- ..-+.+.+++|
T Consensus       341 D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          341 DEKPLLYALSTGDKTLYIHDAESG-EELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTTC-CEEEEECCC-CSSCCEEEECC
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCC-cEEEEecCC-CCCceeEECCc
Confidence            996 666654 4899999999987 777777633 22344566655

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.05  E-value=2.2e-08  Score=104.51  Aligned_cols=217  Identities=13%  Similarity=0.109  Sum_probs=143.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeC-CeEEEEECCCCCchhcccccceeeecc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVG-QDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d-~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      .+++++..++.|..|+. +|.. ..+.. ...+.+++++++|  .++++... +.|.+|+.. +.               
T Consensus        58 ~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG--~l~v~~~~~~~v~~~~~~-g~---------------  117 (305)
T 3dr2_A           58 TLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQ--RLVHCEHGRRAITRSDAD-GQ---------------  117 (305)
T ss_dssp             EEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTS--CEEEEETTTTEEEEECTT-SC---------------
T ss_pred             EEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCC--CEEEEECCCCEEEEECCC-CC---------------
Confidence            47888888999999998 5653 33433 6779999999999  46666644 688888854 21               


Q ss_pred             cccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEE----EeCC----------CCccEEEEEECCCCce
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLST----VMPA----------GESRAIFMHQLSKKLS  531 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat----~s~d----------g~~~~V~Iwdl~~~~~  531 (707)
                                +..+..      ... .....+..++++++|..+++    +...          .....|..++..++..
T Consensus       118 ----------~~~~~~------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~  181 (305)
T 3dr2_A          118 ----------AHLLVG------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL  181 (305)
T ss_dssp             ----------EEEEEC------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred             ----------EEEEEe------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence                      111100      000 11235678999999998886    2211          0123688888766654


Q ss_pred             eeeeeccCCCeEEEEEeCCCCEEEEEe-C------CeEEEEECCCCeEE--EEEe-CCCCCeEEEEEcCCCCEEEEEECC
Q 005235          532 HRIPFKLHGLPVSSVFHPTRSIFFVST-K------KNIRVYDLLKQRLI--KKLE-TGLKEVSSIAIHPAGDNLIVGSRE  601 (707)
Q Consensus       532 ~~~~~~~~~~V~~v~fspd~~~l~v~s-d------g~I~iwDl~~~~~~--~~l~-~~~~~I~sl~~spdg~~L~sGs~D  601 (707)
                      . ... .......++|+|++..|+++. .      +.|.+|++..+.+.  ..+. .....+..++++++|++ .+++.+
T Consensus       182 ~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~  258 (305)
T 3dr2_A          182 Q-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT  258 (305)
T ss_dssp             E-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS
T ss_pred             E-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC
Confidence            4 222 344567899999999888775 4      68999998765421  1121 12344567899999984 444444


Q ss_pred             CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005235          602 GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAY  648 (707)
Q Consensus       602 g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~  648 (707)
                       .|.+|+.+ + +.+..+..+. .+.+++|++++..|..++.++..+
T Consensus       259 -gv~~~~~~-g-~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          259 -GVCVFDSD-G-QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             -EEEEECTT-S-CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             -cEEEECCC-C-CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence             49999984 3 5666666555 588999999998887777665433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.02  E-value=7.8e-09  Score=111.24  Aligned_cols=262  Identities=8%  Similarity=-0.128  Sum_probs=157.0

Q ss_pred             EEEEEeCCC----cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCCCCchhc
Q 005235          390 LEYKGSTDG----TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       390 ~l~sgs~Dg----tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~~~~~~~  455 (707)
                      .+++...++    +|.+.|..+++.+.++.....- .++++||+. .++++.          .++.|.+||+.++...  
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~-~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv--  109 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPI--  109 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEE--
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCCCEE--
Confidence            444444455    8889999999999999884444 899999994 566665          3578888888765321  


Q ss_pred             ccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEE--EECCCCceee
Q 005235          456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFM--HQLSKKLSHR  533 (707)
Q Consensus       456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~I--wdl~~~~~~~  533 (707)
                                            ....+..... .  ........++++|+|++++++.... ...|.+  +|+.+   . 
T Consensus       110 ----------------------~~I~v~~~~~-~--~~g~~P~~ia~SpDGk~lyVan~~~-~~~v~V~~iD~~t---v-  159 (368)
T 1mda_H          110 ----------------------ADIELPDAPR-F--SVGPRVHIIGNCASSACLLFFLFGS-SAAAGLSVPGASD---D-  159 (368)
T ss_dssp             ----------------------EEEEETTSCS-C--CBSCCTTSEEECTTSSCEEEEECSS-SCEEEEEETTTEE---E-
T ss_pred             ----------------------EEEECCCccc-c--ccCCCcceEEEcCCCCEEEEEccCC-CCeEEEEEEchhh---c-
Confidence                                  0000000000 0  0013456899999999999887531 237888  88877   2 


Q ss_pred             eeeccCCCeEEEEEeCCCCEEEEE--eCCeEEEEECCC-----CeEEE----EEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 005235          534 IPFKLHGLPVSSVFHPTRSIFFVS--TKKNIRVYDLLK-----QRLIK----KLETGLKEVSSIAIHPAGDNLIVGSREG  602 (707)
Q Consensus       534 ~~~~~~~~V~~v~fspd~~~l~v~--sdg~I~iwDl~~-----~~~~~----~l~~~~~~I~sl~~spdg~~L~sGs~Dg  602 (707)
                      ..+...+.   +.+.|++...+++  .|+.+.+.|+.+     ++.+.    .+..+..+.   + ++++..++..+. +
T Consensus       160 ~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~  231 (368)
T 1mda_H          160 QLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-S  231 (368)
T ss_dssp             EEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-S
T ss_pred             eEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-C
Confidence            33321111   2234555433332  378888889886     43321    112223333   3 666777777777 9


Q ss_pred             cEEEEECCCCC-cceEEeec-------C---CCCEEEEEEcCCCCEEEEEeC---------CCcEEEEecccccCCCCCC
Q 005235          603 KLCWFDMDLSS-KPYRVLKC-------H---PKDITNVAFHRSYPLFASCSD---------DCTAYVFHGMVYSDLNQNP  662 (707)
Q Consensus       603 ~I~vwDl~~~~-~~~~~l~~-------h---~~~I~~vafspdg~llaSgs~---------Dg~I~Vwd~~~~~Dl~~~~  662 (707)
                      .|.+.|+.... .....+..       +   ......++|+|++..++.+..         ++.+.|+|      +.+..
T Consensus       232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD------~~t~~  305 (368)
T 1mda_H          232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT------ASVGQ  305 (368)
T ss_dssp             CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE------SSSCC
T ss_pred             EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEE------CCCCe
Confidence            99999996432 11221211       0   011122689999987665432         23566994      44554


Q ss_pred             cccceEEeeCCCCCCCCCeeEEEEcCCCC-EEEEEe-CCCcEEEEeC
Q 005235          663 LIVPLEILRGHTSSNGRGVMDCKFHPRQP-WLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       663 ~~~pl~~l~gh~~~~~~gV~~l~fspdg~-~L~s~g-~Dg~IrlWdl  707 (707)
                      .   +..+.....     ...++|+|+|+ .+++.. .+++|.++|+
T Consensus       306 v---v~~i~vg~~-----p~gi~~s~Dg~~l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          306 T---SGPISNGHD-----SDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             E---EECCEEEEE-----ECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             E---EEEEECCCC-----cceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence            4   344433322     78999999998 456666 5999999985

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.02  E-value=8.5e-09  Score=107.86  Aligned_cols=285  Identities=9%  Similarity=0.001  Sum_probs=180.4

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc-cccee---
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR-VKDLL---  462 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~-~~~v~---  462 (707)
                      ...++.|+.++.|..|| .+|+.+..+.. ...+.++...+++  .+++++.+  |..+|. ++....... .....   
T Consensus        30 ~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~  103 (330)
T 3hxj_A           30 NGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG--TIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF  103 (330)
T ss_dssp             TSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT--EECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred             CCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC--cEEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence            34677778889999999 88988765554 3455778888887  46655544  888885 433211111 11100   


Q ss_pred             eecc-cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCC
Q 005235          463 HVET-PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHG  540 (707)
Q Consensus       463 ~~~~-~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~  540 (707)
                      .+.- .+..++.++.+..++..+............+.++...++|. +..++.++   .|..++.. +... ..+ ....
T Consensus       104 ~~~~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~---~l~~~d~~-g~~~-~~~~~~~~  177 (330)
T 3hxj_A          104 TIFEDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDN---YLYAINPD-GTEK-WRFKTNDA  177 (330)
T ss_dssp             EEETTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTS---EEEEECTT-SCEE-EEEECSSC
T ss_pred             eEECCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCC---EEEEECCC-CCEe-EEEecCCC
Confidence            0011 14556667788888877332222333444566777777777 44456556   89999988 6554 444 3345


Q ss_pred             CeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235          541 LPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       541 ~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~  620 (707)
                      .+.++.+.+++.++ +++ +.|..|| .+++.+..+......+.++.+.++| .|.+|+.++.|..+|.. + ..+..+.
T Consensus       178 ~~~~~~~d~~g~l~-v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~-g-~~~~~~~  251 (330)
T 3hxj_A          178 ITSAASIGKDGTIY-FGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG-TIYVTSLDGHLYAINPD-G-TEKWRFK  251 (330)
T ss_dssp             CCSCCEECTTCCEE-EES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS-CEEEEETTTEEEEECTT-S-CEEEEEE
T ss_pred             ceeeeEEcCCCEEE-EEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCC-eEEEEcCCCeEEEECCC-C-CEeEEee
Confidence            56777787777754 445 8999999 7777777776666678889998887 45667778889888753 3 4445555


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                      .....+.++.+.+++. |..++.+|.|..++      . ++..   +..+......    +.++...+++. |+.++.+|
T Consensus       252 ~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d------~-~g~~---~~~~~~~~~~----~~~~~~d~~g~-l~~gt~~G  315 (330)
T 3hxj_A          252 TGKRIESSPVIGNTDT-IYFGSYDGHLYAIN------P-DGTE---KWNFETGSWI----IATPVIDENGT-IYFGTRNG  315 (330)
T ss_dssp             CSSCCCSCCEECTTSC-EEEECTTCEEEEEC------T-TSCE---EEEEECSSCC----CSCCEECTTCC-EEEECTTS
T ss_pred             CCCCccccceEcCCCe-EEEecCCCCEEEEC------C-CCcE---EEEEEcCCcc----ccceEEcCCCE-EEEEcCCC
Confidence            4444455566666665 45677788899994      2 2222   2333333333    77778878776 55688899


Q ss_pred             cEEEEe
Q 005235          701 VIRLYC  706 (707)
Q Consensus       701 ~IrlWd  706 (707)
                      .+++..
T Consensus       316 ~~~~~~  321 (330)
T 3hxj_A          316 KFYALF  321 (330)
T ss_dssp             CEEEEE
T ss_pred             eEEEEe
Confidence            988753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.01  E-value=7.1e-08  Score=112.42  Aligned_cols=290  Identities=10%  Similarity=0.013  Sum_probs=184.9

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCc------------EEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEA------------IQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~------------V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~  455 (707)
                      ...+|.++.++.|.-+|..||+.+..+.....            ...+++. ++  .+++++.++.|..+|..++.....
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~-~~--~v~v~~~dg~l~alD~~tG~~~W~  153 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KG--KVYVGAWDGRLIALDAATGKEVWH  153 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE-CC--EEEEEcCCCEEEEEECCCCCEEee
Confidence            35788888899999999999999988876321            1233332 33  688888899999999998875322


Q ss_pred             cccc-------ceeeec----ccccccC------CCCcEEEEecCCccceEEecc-------------------------
Q 005235          456 RRVK-------DLLHVE----TPTAPDD------NMASIVSWLQHDKLDGIRLRH-------------------------  493 (707)
Q Consensus       456 ~~~~-------~v~~~~----~~~~~~~------~d~~i~iW~~~~~~~~~~~~h-------------------------  493 (707)
                      ....       .+....    -.+..+.      .++.+..+|..++...-....                         
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g  233 (677)
T 1kb0_A          154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (677)
T ss_dssp             EETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             ecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence            2111       111100    0022222      268899999876655321110                         


Q ss_pred             --------CCCeEEEEEcCCCCEEEEEeCCCC----------------ccEEEEEECCCCceeeeee---ccC-------
Q 005235          494 --------FKMVSSVEWHRRGDYLSTVMPAGE----------------SRAIFMHQLSKKLSHRIPF---KLH-------  539 (707)
Q Consensus       494 --------~~~V~~v~~sp~g~~lat~s~dg~----------------~~~V~Iwdl~~~~~~~~~~---~~~-------  539 (707)
                              ......+++++++..++.++.++.                ...|..+|..+++.. -.+   .+.       
T Consensus       234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~-W~~~~~~~d~wd~~~~  312 (677)
T 1kb0_A          234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK-WHYQETPGDNWDYTST  312 (677)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE-EEEESSTTCCSCCCCC
T ss_pred             ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE-EEEecCCCcccccccC
Confidence                    011135788899988888776531                125999999998876 554   221       


Q ss_pred             CCeEEEEEeCCC---CEEEEEe-CCeEEEEECCCCeEEEEEeCCC-CC----------e---------------------
Q 005235          540 GLPVSSVFHPTR---SIFFVST-KKNIRVYDLLKQRLIKKLETGL-KE----------V---------------------  583 (707)
Q Consensus       540 ~~V~~v~fspd~---~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~----------I---------------------  583 (707)
                      .....+....+|   ..+++++ +|.|+++|..+++++..+.... .+          +                     
T Consensus       313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~  392 (677)
T 1kb0_A          313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA  392 (677)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred             CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence            223333444467   5677777 8999999999999987765321 11          1                     


Q ss_pred             ---EEEEEcCCCCEEEEEECC-------------------------------------------CcEEEEECCCCCcceE
Q 005235          584 ---SSIAIHPAGDNLIVGSRE-------------------------------------------GKLCWFDMDLSSKPYR  617 (707)
Q Consensus       584 ---~sl~~spdg~~L~sGs~D-------------------------------------------g~I~vwDl~~~~~~~~  617 (707)
                         ..++|+|++.+|++++.+                                           |.|..||+.++ +.+-
T Consensus       393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W  471 (677)
T 1kb0_A          393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAW  471 (677)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT-EEEE
T ss_pred             cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC-cEEe
Confidence               156889998888886542                                           77999999988 5454


Q ss_pred             EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEE
Q 005235          618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT  695 (707)
Q Consensus       618 ~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s  695 (707)
                      .+. +...+.+..++..+.+++.++.||.+++||      +.++..   +..+......   ...-+.|.++|+.++.
T Consensus       472 ~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D------~~tG~~---lw~~~~~~~~---~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          472 SVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYH------AATGEK---LWEAPTGTGV---VAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEE------TTTCCE---EEEEECSSCC---CSCCEEEEETTEEEEE
T ss_pred             ecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEE------CCCCce---eeeeeCCCCc---ccCCEEEEeCCEEEEE
Confidence            444 334455566777888888899999999994      445554   4445433221   0344667788875543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.95  E-value=1.1e-07  Score=101.12  Aligned_cols=193  Identities=8%  Similarity=0.019  Sum_probs=128.0

Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCC--CCccEEEEEECCCCceeeeee--c-----cCCCeEEEEEeCCCCEEEEE-----
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPA--GESRAIFMHQLSKKLSHRIPF--K-----LHGLPVSSVFHPTRSIFFVS-----  557 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~d--g~~~~V~Iwdl~~~~~~~~~~--~-----~~~~V~~v~fspd~~~l~v~-----  557 (707)
                      .+...+..|+++++|+.+++-...  .....|.+||+.+++.. ..+  .     ....+..+++++++..++++     
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~-~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLS-RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEE-EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEE-EEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence            456789999999998866654320  00138999999988754 433  1     12356899999876565554     


Q ss_pred             eCCeEEEEECCCCeEEEEEeCCC-----------------------------CCeEEEEEcCCCCEEEEEECCC-cEEEE
Q 005235          558 TKKNIRVYDLLKQRLIKKLETGL-----------------------------KEVSSIAIHPAGDNLIVGSREG-KLCWF  607 (707)
Q Consensus       558 sdg~I~iwDl~~~~~~~~l~~~~-----------------------------~~I~sl~~spdg~~L~sGs~Dg-~I~vw  607 (707)
                      .++.|.+||+.+++..+.+..|.                             ..+..|+|+|+|+.|+++...+ .|..+
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            35789999999887766553310                             1368899999999998887766 55555


Q ss_pred             ECCC---CC----c---ceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC--CCC
Q 005235          608 DMDL---SS----K---PYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG--HTS  675 (707)
Q Consensus       608 Dl~~---~~----~---~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g--h~~  675 (707)
                      +...   +.    .   .+. ..++......++++++|.++++...++.|.+|+..      ++.    +..+..  +..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~------~G~----~~~~~~~~~~~  291 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSA------DRA----YKLLVTDEKLS  291 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETT------TTE----EEEEEECGGGS
T ss_pred             EHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECC------CCC----EEEEEECCcee
Confidence            5321   00    0   011 12344456679999999999999999999999641      121    122221  122


Q ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          676 SNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       676 ~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                      .    +.+|+|.+++.++++.+..+
T Consensus       292 ~----p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          292 W----TDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             C----EEEEEECTTSCEEEEECCGG
T ss_pred             c----CCeeEECCCCcEEEEeCccc
Confidence            3    89999999998877776443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.92  E-value=2.3e-07  Score=100.92  Aligned_cols=194  Identities=8%  Similarity=0.022  Sum_probs=127.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC---CccEEEEEECCCCceeeeeec-cC---CCeEEEEEeCCCCEEEEEe----------
Q 005235          496 MVSSVEWHRRGDYLSTVMPAG---ESRAIFMHQLSKKLSHRIPFK-LH---GLPVSSVFHPTRSIFFVST----------  558 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~~~~~-~~---~~V~~v~fspd~~~l~v~s----------  558 (707)
                      ....+..+|+| .++++..+.   ..+.|.+.|..+.... ..+. ..   .....+.|+|+++.++++.          
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~-~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g  216 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPL-GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDG  216 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEE-EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEE-EEEccCCCCccccceEEECCCCCEEEEccCcCccccccc
Confidence            34567778999 666555441   2358999999998877 6662 21   2244588899999988884          


Q ss_pred             ----------CCeEEEEECCCCeEEEEEeCCC--CCeEEEEE--cCCCCEEEEEEC------CCcEEEEECCCCC-cceE
Q 005235          559 ----------KKNIRVYDLLKQRLIKKLETGL--KEVSSIAI--HPAGDNLIVGSR------EGKLCWFDMDLSS-KPYR  617 (707)
Q Consensus       559 ----------dg~I~iwDl~~~~~~~~l~~~~--~~I~sl~~--spdg~~L~sGs~------Dg~I~vwDl~~~~-~~~~  617 (707)
                                ..+|.+||+.+++.+.++..+.  .....|.|  +|+|+++.+++.      +++|.+|..+.+. ...+
T Consensus       217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             cchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence                      6899999999999998888652  23455655  999999988874      5678776665321 0111


Q ss_pred             Ee--ecC----------------CCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCC----
Q 005235          618 VL--KCH----------------PKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT----  674 (707)
Q Consensus       618 ~l--~~h----------------~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~----  674 (707)
                      .+  ...                ......+.+|+||++|.++. ..+.|.+|++.   +..+..   .+..+.-..    
T Consensus       297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~---d~~~~~---lv~~I~tGG~~~~  370 (462)
T 2ece_A          297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS---NPFKPV---LTGKVKLGGIFHR  370 (462)
T ss_dssp             EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS---STTSCE---EEEEEECBTTTTC
T ss_pred             EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec---CCCCcE---EEEEEEeCCeecc
Confidence            11  000                23467899999999776655 57899999764   211111   233332210    


Q ss_pred             ------CCCCCCeeEEEEcCCCCEEEEEe
Q 005235          675 ------SSNGRGVMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       675 ------~~~~~gV~~l~fspdg~~L~s~g  697 (707)
                            ..-..+-..++++|||++|+++.
T Consensus       371 ~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          371 ADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             BCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                  00001257899999999999887

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.86  E-value=7.5e-07  Score=104.00  Aligned_cols=288  Identities=9%  Similarity=0.001  Sum_probs=180.1

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCc-----------E-EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEA-----------I-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~-----------V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~  455 (707)
                      ...+|.++.++.|.-+|..||+.+..+.....           + ..++.. ++  .+++++.++.|..+|..++...-.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~g--~v~v~~~dg~l~AlDa~TG~~~W~  146 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW-KG--KVYVGVLDGRLEAIDAKTGQRAWS  146 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE-CC--EEEEEccCCEEEEEECCCCCEeee
Confidence            45788888899999999999999988865211           1 122322 33  588888899999999999875322


Q ss_pred             cccc-------ceeeec--cc--ccccC------CCCcEEEEecCCccceEEec--------------------------
Q 005235          456 RRVK-------DLLHVE--TP--TAPDD------NMASIVSWLQHDKLDGIRLR--------------------------  492 (707)
Q Consensus       456 ~~~~-------~v~~~~--~~--~~~~~------~d~~i~iW~~~~~~~~~~~~--------------------------  492 (707)
                      ....       .+....  ..  +..+.      .++.+..|+..++...-...                          
T Consensus       147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            2111       110000  00  22222      36788989887666532111                          


Q ss_pred             ------cCCCeEEEEEcCCCCEEEEEeCCCC----------------ccEEEEEECCCCceeeeee-c--cC-------C
Q 005235          493 ------HFKMVSSVEWHRRGDYLSTVMPAGE----------------SRAIFMHQLSKKLSHRIPF-K--LH-------G  540 (707)
Q Consensus       493 ------h~~~V~~v~~sp~g~~lat~s~dg~----------------~~~V~Iwdl~~~~~~~~~~-~--~~-------~  540 (707)
                            +......+++.+++..+++++.++.                ...|..+|..+++.. -.+ .  +.       .
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~-W~~~~~~~d~wd~~~~~  305 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV-WHYQTTPGDAWDYTATQ  305 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE-EEEESSTTCCSCCCCCS
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee-EeeecCCcccccccCCC
Confidence                  0011125788888888888876641                014999999999877 555 1  21       1


Q ss_pred             CeEEEEEeCCCC---EEEEEe-CCeEEEEECCCCeEEEEEeCCC-CCe--------------------------------
Q 005235          541 LPVSSVFHPTRS---IFFVST-KKNIRVYDLLKQRLIKKLETGL-KEV--------------------------------  583 (707)
Q Consensus       541 ~V~~v~fspd~~---~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-~~I--------------------------------  583 (707)
                      .+.......+|.   .+++++ +|.|+++|..+|+++....... .+.                                
T Consensus       306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~  385 (689)
T 1yiq_A          306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF  385 (689)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred             CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence            222222233554   566777 8999999999999875443211 111                                


Q ss_pred             ------EEEEEcCCCCEEEEEEC---------------------------------------------CCcEEEEECCCC
Q 005235          584 ------SSIAIHPAGDNLIVGSR---------------------------------------------EGKLCWFDMDLS  612 (707)
Q Consensus       584 ------~sl~~spdg~~L~sGs~---------------------------------------------Dg~I~vwDl~~~  612 (707)
                            ..++|+|+..+|++++.                                             +|.|..||+.++
T Consensus       386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG  465 (689)
T 1yiq_A          386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ  465 (689)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred             ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence                  13688998888887643                                             377999999988


Q ss_pred             CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235          613 SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW  692 (707)
Q Consensus       613 ~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~  692 (707)
                       +.+-.+..+. .+....++..+.++++|+.||.|++||      ..++..   +..+......   ...-+.|..+|+.
T Consensus       466 -~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D------~~tG~~---lw~~~~~~~~---~~~p~ty~~~G~q  531 (689)
T 1yiq_A          466 -QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYA------ADTGEK---LWEQPAASGV---MAAPVTYSVDGEQ  531 (689)
T ss_dssp             -EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEE------TTTCCE---EEEEECSSCC---CSCCEEEEETTEE
T ss_pred             -CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEE------CCCCcc---ceeeeCCCCc---ccCceEEEECCEE
Confidence             5555555443 334446666788999999999999995      445544   4455433321   0234677788874


Q ss_pred             E
Q 005235          693 L  693 (707)
Q Consensus       693 L  693 (707)
                      .
T Consensus       532 y  532 (689)
T 1yiq_A          532 Y  532 (689)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.86  E-value=7.6e-08  Score=105.33  Aligned_cols=218  Identities=15%  Similarity=0.124  Sum_probs=144.5

Q ss_pred             CCCcEEEEeCCCCeEEEEEecC--------CcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhcccccc---ee
Q 005235          396 TDGTVRIWEVESGRCLRVLEIG--------EAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQRRVKD---LL  462 (707)
Q Consensus       396 ~DgtVrIWd~~tg~~l~~l~~~--------~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~~~~---v~  462 (707)
                      .++.|.++|..+++.+..+...        .....++|+|||. .++++..  ++.|.++|+.+....-.-....   +.
T Consensus       147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~  225 (426)
T 3c75_H          147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIF  225 (426)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeec
Confidence            4779999999999999888753        3456899999994 5666653  5789999998874321111000   00


Q ss_pred             eec-ccccccCCCCcEEEEecCCccceEEe----c-cCCC-eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-e
Q 005235          463 HVE-TPTAPDDNMASIVSWLQHDKLDGIRL----R-HFKM-VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-I  534 (707)
Q Consensus       463 ~~~-~~~~~~~~d~~i~iW~~~~~~~~~~~----~-h~~~-V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~  534 (707)
                      ... ..++..+.++.+...+..........    . ...+ ...+.|.+++..++..+..+   .|.+.|+....... .
T Consensus       226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g---~V~ViD~~~~~~~v~~  302 (426)
T 3c75_H          226 PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTG---KIFQADLTAEGATFRA  302 (426)
T ss_dssp             EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTS---EEEEEEECSSCEEECC
T ss_pred             cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCC---cEEEEeccCCceEEee
Confidence            000 00233445666666665333222110    0 0111 12356788998888777766   89999986554210 1


Q ss_pred             eec-----------cCCCeEEEEEeCCCCEEEEEe-----------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 005235          535 PFK-----------LHGLPVSSVFHPTRSIFFVST-----------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG  592 (707)
Q Consensus       535 ~~~-----------~~~~V~~v~fspd~~~l~v~s-----------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg  592 (707)
                      ++.           .......++|+|++..++++.           .+.|.++|+.+.+.+.++..+ ....+|+|+|+|
T Consensus       303 ~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg  381 (426)
T 3c75_H          303 PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDA  381 (426)
T ss_dssp             CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSS
T ss_pred             eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCC
Confidence            110           112233478999999888874           247999999999999998765 357899999999


Q ss_pred             C-EEEEEE-CCCcEEEEECCCCCcceEEe
Q 005235          593 D-NLIVGS-REGKLCWFDMDLSSKPYRVL  619 (707)
Q Consensus       593 ~-~L~sGs-~Dg~I~vwDl~~~~~~~~~l  619 (707)
                      + ++++.. .++.|.++|+.+. +.++++
T Consensus       382 ~~~lyv~n~~s~~VsVID~~t~-kvv~tI  409 (426)
T 3c75_H          382 EPLLYALSAGTQTLHIYDAATG-EELRSV  409 (426)
T ss_dssp             SCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred             CEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence            9 888888 5899999999987 667775

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.83  E-value=2.9e-07  Score=97.84  Aligned_cols=204  Identities=12%  Similarity=0.125  Sum_probs=133.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--------ccCCCeEEEEEeCCCCEEEEEe------CC
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--------KLHGLPVSSVFHPTRSIFFVST------KK  560 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--------~~~~~V~~v~fspd~~~l~v~s------dg  560 (707)
                      ..+..|+++++|+.|++...-.. +.+.||.+..+. . .+|        .+...+.+++|++++.++++.+      +.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~-~~~~l~~~~~g~-~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQ-PEMQVAELTQDG-L-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGC-CSCSEEEEETTE-E-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCC-CceEEEEECCCC-e-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence            68899999999999888653211 124555554333 2 444        1335789999999987666543      37


Q ss_pred             eEEEEECCCCeEEEEEeCC------CCCeEEEEEcCCCCEE-EEEE---CCCcEEEEECCCCCcceEEeecCC-------
Q 005235          561 NIRVYDLLKQRLIKKLETG------LKEVSSIAIHPAGDNL-IVGS---REGKLCWFDMDLSSKPYRVLKCHP-------  623 (707)
Q Consensus       561 ~I~iwDl~~~~~~~~l~~~------~~~I~sl~~spdg~~L-~sGs---~Dg~I~vwDl~~~~~~~~~l~~h~-------  623 (707)
                      .|.+||+.+++.+..+..+      ...+..++++|++..+ ++.+   .++.|.+||+.++ +..+.+.+|.       
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCccccccc
Confidence            8999999999988777642      1346899999865555 4444   5789999999866 4455443321       


Q ss_pred             ----------------------CCEEEEEEcCCCCEEEEEeCCC-cEEEEecccccC--CCCCCcccceEEeeCCCCCCC
Q 005235          624 ----------------------KDITNVAFHRSYPLFASCSDDC-TAYVFHGMVYSD--LNQNPLIVPLEILRGHTSSNG  678 (707)
Q Consensus       624 ----------------------~~I~~vafspdg~llaSgs~Dg-~I~Vwd~~~~~D--l~~~~~~~pl~~l~gh~~~~~  678 (707)
                                            ..+..++|+|+++.|+.+..++ .|..++.....+  +........+. ..++...  
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~--  249 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPI--  249 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCS--
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCC--
Confidence                                  2368899999999888877666 444443221111  00000000111 1233333  


Q ss_pred             CCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          679 RGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       679 ~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                        ...++++++|.++++...++.|.+|+.
T Consensus       250 --pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          250 --CDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             --CSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             --CceEEECCCCCEEEEccCCCeEEEEEC
Confidence              677999999999899888999999973

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.80  E-value=1.6e-09  Score=116.82  Aligned_cols=205  Identities=10%  Similarity=0.013  Sum_probs=111.1

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      ...+|+|+.||.|+.||..+|+.+..+.. +.+.+..+..++ ..+++++.++.|+.||..++...              
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~--------------   72 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGL--------------   72 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCS--------------
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCC-CEEEEeCCCCEEEEEECCCCcee--------------
Confidence            46899999999999999999999998887 666666666666 24555568899999998766331              


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVF  547 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~f  547 (707)
                                ..|.......    ....++.    . .+..+++++.++   .|..||..+++.. ..+....   ...+
T Consensus        73 ----------w~~~~~~~~~----~~~sp~~----~-~~~~v~~g~~dg---~v~a~D~~tG~~~-w~~~~~~---~~~~  126 (369)
T 2hz6_A           73 ----------TKLPFTIPEL----VQASPCR----S-SDGILYMGKKQD---IWYVIDLLTGEKQ-QTLSSAF---ADSL  126 (369)
T ss_dssp             ----------EECSCCHHHH----HTTCSCC----------CCCCEEEE---EEEEECCC--------------------
T ss_pred             ----------eeeeccCccc----cccCceE----e-cCCEEEEEeCCC---EEEEEECCCCcEE-EEecCCC---cccc
Confidence                      1111100000    0011111    1 244566667666   9999999998876 5552222   2345


Q ss_pred             eCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC---CEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235          548 HPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG---DNLIVGSREGKLCWFDMDLSSKPYRVLKCHP  623 (707)
Q Consensus       548 spd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg---~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~  623 (707)
                      +|++..+++++ ++.|+.||..+++.+..+..+.  ..+.++++++   ..+++++.+|.|+.||..++ +.+-.+....
T Consensus       127 ~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~  203 (369)
T 2hz6_A          127 SPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG-DVLWIQNYAS  203 (369)
T ss_dssp             ------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC-CEEEEEECSS
T ss_pred             cccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC-cEEEEecCCC
Confidence            67777888877 8999999999998766654321  2233444432   56788999999999999987 4555555333


Q ss_pred             CCEEEEEEcCCCCE
Q 005235          624 KDITNVAFHRSYPL  637 (707)
Q Consensus       624 ~~I~~vafspdg~l  637 (707)
                      ..+...++++++.+
T Consensus       204 pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          204 PVVAFYVWQREGLR  217 (369)
T ss_dssp             CEEEEEECTTSSCE
T ss_pred             ceEEEEEecCCceE
Confidence            22333455566643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.79  E-value=1.2e-06  Score=93.89  Aligned_cols=248  Identities=13%  Similarity=0.058  Sum_probs=155.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc-cee----
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK-DLL----  462 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~-~v~----  462 (707)
                      ...++.++.++.|..+|..+|+.+..+.....+.+.....++  .+++++.++.|..+|..++......... ...    
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETT--EEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECC--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            357888899999999999999998887764333221112244  5888888999999999888653221111 110    


Q ss_pred             -----eecccccccCCCCcEEEEecCCccceEEeccCCC-----------e-EEEEEcCCCCEEEEEeCCCCccEEEEEE
Q 005235          463 -----HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM-----------V-SSVEWHRRGDYLSTVMPAGESRAIFMHQ  525 (707)
Q Consensus       463 -----~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~-----------V-~~v~~sp~g~~lat~s~dg~~~~V~Iwd  525 (707)
                           ...-.+..+..++.+..++..++...-.......           + .....  .+..+++++.++   .+..+|
T Consensus       181 ~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g---~l~~~d  255 (376)
T 3q7m_A          181 ESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNG---NLTALD  255 (376)
T ss_dssp             CCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTS---CEEEEE
T ss_pred             CCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCc---EEEEEE
Confidence                 0000145566678888888876554332211110           0 11111  246677777766   899999


Q ss_pred             CCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCc
Q 005235          526 LSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET-GLKEVSSIAIHPAGDNLIVGSREGK  603 (707)
Q Consensus       526 l~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~  603 (707)
                      ..+++.. ..... .....+...  +..+++++ ++.|..+|..+++.+..... ....+.+..+.  +..|++++.+|.
T Consensus       256 ~~tG~~~-w~~~~-~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~  329 (376)
T 3q7m_A          256 LRSGQIM-WKREL-GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGY  329 (376)
T ss_dssp             TTTCCEE-EEECC-CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSE
T ss_pred             CCCCcEE-eeccC-CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCe
Confidence            9888765 44422 223444443  55666666 78999999999998877762 22333444443  578999999999


Q ss_pred             EEEEECCCCCcceEEeecCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEe
Q 005235          604 LCWFDMDLSSKPYRVLKCHPKDITN-VAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       604 I~vwDl~~~~~~~~~l~~h~~~I~~-vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      |.++|..++ +.+.........+.+ ...  .+..|+.++.+|.|..|+
T Consensus       330 l~~~d~~tG-~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          330 LHWINVEDG-RFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEEETTTC-CEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             EEEEECCCC-cEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            999999987 555555543333322 222  245677788999999884

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=9.8e-07  Score=90.16  Aligned_cols=197  Identities=9%  Similarity=-0.006  Sum_probs=131.3

Q ss_pred             ccCC--CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe--CCeEEEE
Q 005235          492 RHFK--MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST--KKNIRVY  565 (707)
Q Consensus       492 ~h~~--~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s--dg~I~iw  565 (707)
                      .|..  ....++|+++|..+++.+..+ .+.|.+.|+.+++.. ..+  ........++++  +..|++++  ++.+.++
T Consensus        16 p~~~~~f~~Gl~~~~dg~Lyvstg~~~-~s~v~~iD~~tg~v~-~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~vi   91 (266)
T 2iwa_A           16 PHDPYAFTQGLVYAENDTLFESTGLYG-RSSVRQVALQTGKVE-NIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIY   91 (266)
T ss_dssp             ECCTTCCEEEEEECSTTEEEEEECSTT-TCEEEEEETTTCCEE-EEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred             ECCCCCCcccEEEeCCCeEEEECCCCC-CCEEEEEECCCCCEE-EEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEE
Confidence            4553  357999999875445444322 359999999999887 555  332233445554  66788877  7999999


Q ss_pred             ECCCCeEEEEEeCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-----CCEEEEEEcCCCCEEE
Q 005235          566 DLLKQRLIKKLETG-LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-----KDITNVAFHRSYPLFA  639 (707)
Q Consensus       566 Dl~~~~~~~~l~~~-~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-----~~I~~vafspdg~lla  639 (707)
                      |..+.+.+.++..+ ..   .+.++++|..|+++..++.|.++|..+. +....+.-..     ..++.+.|. ++.+++
T Consensus        92 D~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-dg~lyv  166 (266)
T 2iwa_A           92 DRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-NGEVWA  166 (266)
T ss_dssp             ETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             ECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-CCEEEE
Confidence            99999999998754 22   2345668887777778899999999876 5555554211     246788888 777777


Q ss_pred             EEeCCCcEEEEecccccCCCCCCcccceEEeeCC---------CCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235          640 SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH---------TSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYC  706 (707)
Q Consensus       640 Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh---------~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWd  706 (707)
                      ....++.|.+.|      ..++..   +..+.-.         ..........++|+|++..|+.++ ..+.|.+-+
T Consensus       167 n~~~~~~V~vID------~~tg~V---~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          167 NIWQTDCIARIS------AKDGTL---LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EETTSSEEEEEE------TTTCCE---EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             ecCCCCeEEEEE------CCCCcE---EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            776788999994      445544   3333211         000011268999999998765554 566666543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.75  E-value=1.7e-06  Score=94.14  Aligned_cols=222  Identities=14%  Similarity=0.117  Sum_probs=142.6

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCC----eEEEEEec--------CCcEEEEEEccCCCccEEEEEeC------CeEEEEECC
Q 005235          387 ACYLEYKGSTDGTVRIWEVESG----RCLRVLEI--------GEAIQYVAWNPLPELPVLAVSVG------QDVLILNTG  448 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg----~~l~~l~~--------~~~V~~v~~spdg~~~lla~s~d------~~V~lwd~~  448 (707)
                      ...++++|..+++|.|.|+.+.    +.+++++.        ......+..+|+|  .++++..+      +.|.++|..
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTT
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECC
Confidence            3456777888899999999866    77888841        2356778899999  45555444      567777766


Q ss_pred             CCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC-------------
Q 005235          449 LGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA-------------  515 (707)
Q Consensus       449 ~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d-------------  515 (707)
                      ++.                        .+..|....       .-..--..+.|+|+++.+++....             
T Consensus       173 T~~------------------------v~~~~~~~~-------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~  221 (462)
T 2ece_A          173 SFE------------------------PLGKWEIDR-------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH  221 (462)
T ss_dssp             TCC------------------------EEEECCSBC-------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred             CCe------------------------EEEEEccCC-------CCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence            542                        122332110       111223468889999988887410             


Q ss_pred             ---CCccEEEEEECCCCceeeeeecc---CCCeEEEEE--eCCCCEEEEEe-------CCeEEEEECCCCeE--EEEE--
Q 005235          516 ---GESRAIFMHQLSKKLSHRIPFKL---HGLPVSSVF--HPTRSIFFVST-------KKNIRVYDLLKQRL--IKKL--  576 (707)
Q Consensus       516 ---g~~~~V~Iwdl~~~~~~~~~~~~---~~~V~~v~f--spd~~~l~v~s-------dg~I~iwDl~~~~~--~~~l--  576 (707)
                         .....|.+||+.+++.. ..+..   ......+.|  +|+++++++++       +++|.+|....+..  .+.+  
T Consensus       222 ~~~~~~d~V~v~D~~~~k~~-~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi  300 (462)
T 2ece_A          222 LKDRYGNRIHFWDLRKRKRI-HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI  300 (462)
T ss_dssp             HHHHSCCEEEEEETTTTEEE-EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred             hhhccCCEEEEEECCCCcEe-eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence               01349999999987655 55622   234555656  99999988754       36777766544421  1211  


Q ss_pred             eCC----------------CCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCC--cceEEeecCC--------------
Q 005235          577 ETG----------------LKEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLSS--KPYRVLKCHP--------------  623 (707)
Q Consensus       577 ~~~----------------~~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~~--~~~~~l~~h~--------------  623 (707)
                      ...                ...+..|.+||||++|.++.. .+.|.+||+....  +.+..+....              
T Consensus       301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~  380 (462)
T 2ece_A          301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLT  380 (462)
T ss_dssp             CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCC
T ss_pred             CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCC
Confidence            110                134788999999999988765 5789999986332  3344443221              


Q ss_pred             CCEEEEEEcCCCCEEEEEe
Q 005235          624 KDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       624 ~~I~~vafspdg~llaSgs  642 (707)
                      +.-+.++++|+|++|+++.
T Consensus       381 ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          381 GAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEcCCCCEEEEEc
Confidence            1247899999999888877

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.73  E-value=1.1e-06  Score=98.87  Aligned_cols=221  Identities=11%  Similarity=0.020  Sum_probs=139.7

Q ss_pred             CcEEEEecCCccceE--EeccCCCeEEEEE-c-CCCCEEEEEeCC-------C--------CccEEEEEECCCCceeeee
Q 005235          475 ASIVSWLQHDKLDGI--RLRHFKMVSSVEW-H-RRGDYLSTVMPA-------G--------ESRAIFMHQLSKKLSHRIP  535 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~--~~~h~~~V~~v~~-s-p~g~~lat~s~d-------g--------~~~~V~Iwdl~~~~~~~~~  535 (707)
                      ..|.+-++...+...  .+.....+..+++ + |++.|+++++..       |        ..+.+.+.|..+.+.. ..
T Consensus       112 ~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~-~q  190 (595)
T 1fwx_A          112 TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVA-WQ  190 (595)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEE-EE
T ss_pred             CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEE-EE
Confidence            344555554433322  2233456788888 5 899999888632       1        2458999999987766 55


Q ss_pred             eccCCCeEEEEEeCCCCEEEEEe-CC--------------------------------------eEEEEECCC--CeE-E
Q 005235          536 FKLHGLPVSSVFHPTRSIFFVST-KK--------------------------------------NIRVYDLLK--QRL-I  573 (707)
Q Consensus       536 ~~~~~~V~~v~fspd~~~l~v~s-dg--------------------------------------~I~iwDl~~--~~~-~  573 (707)
                      +...+....++++|+|+++++++ +.                                      .|.|.|..+  ++. +
T Consensus       191 I~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~  270 (595)
T 1fwx_A          191 VLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFT  270 (595)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSE
T ss_pred             EEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeE
Confidence            53333567888999999999887 21                                      377788777  444 4


Q ss_pred             EEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCC-----------cceEEeecCCCCEEEEEEcCCCCEEEEE
Q 005235          574 KKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSS-----------KPYRVLKCHPKDITNVAFHRSYPLFASC  641 (707)
Q Consensus       574 ~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~-----------~~~~~l~~h~~~I~~vafspdg~llaSg  641 (707)
                      ..+..+ ....++.++|||+++++++ .+.+|.++|+.+..           .....+. -...-+.++|+|+|...++.
T Consensus       271 ~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~  348 (595)
T 1fwx_A          271 RYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSL  348 (595)
T ss_dssp             EEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEE
T ss_pred             EEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEE
Confidence            555443 3467899999999887765 57889999998531           1223332 23457899999999666677


Q ss_pred             eCCCcEEEEecccccC-CCCCCcccceEEeeCCCCCC-CCCeeEEEEcCCCCEEEEEeC
Q 005235          642 SDDCTAYVFHGMVYSD-LNQNPLIVPLEILRGHTSSN-GRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       642 s~Dg~I~Vwd~~~~~D-l~~~~~~~pl~~l~gh~~~~-~~gV~~l~fspdg~~L~s~g~  698 (707)
                      -.|++|.+|++..... +........+..+..|-... ...-.++.++|||+||+++..
T Consensus       349 ~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          349 FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             ecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            7899999998653100 00001112355665553310 000122346899999998863

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.73  E-value=1.6e-07  Score=100.95  Aligned_cols=225  Identities=7%  Similarity=-0.014  Sum_probs=142.4

Q ss_pred             CCCcEEEEeCCCCeEEEEEecC--------CcEEEEEEccCCCccEEEEEe--CCeEEE--EECCCCCchhcc-ccccee
Q 005235          396 TDGTVRIWEVESGRCLRVLEIG--------EAIQYVAWNPLPELPVLAVSV--GQDVLI--LNTGLGNEEEQR-RVKDLL  462 (707)
Q Consensus       396 ~DgtVrIWd~~tg~~l~~l~~~--------~~V~~v~~spdg~~~lla~s~--d~~V~l--wd~~~~~~~~~~-~~~~v~  462 (707)
                      .+++|.+||+.+++.+.++...        .....++++|||. .++++..  ++.|.+  +|+.+ ...+.. ....+.
T Consensus        94 ~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~  171 (368)
T 1mda_H           94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIH  171 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEc
Confidence            4789999999999999998763        3467899999994 6666664  457888  88765 111100 000000


Q ss_pred             eec-ccccccCCCCcEEEEecCC-----ccceE-----EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCce
Q 005235          463 HVE-TPTAPDDNMASIVSWLQHD-----KLDGI-----RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLS  531 (707)
Q Consensus       463 ~~~-~~~~~~~~d~~i~iW~~~~-----~~~~~-----~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~  531 (707)
                      ... ..+.+.+.++.+...+...     +....     ..-...+.   . ++++..++.++. +   .|.+.|+.....
T Consensus       172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~---~V~viD~~~~~~  243 (368)
T 1mda_H          172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-S---SILQGDIPAAGA  243 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-S---CCEEEECCSSCC
T ss_pred             cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-C---EEEEEECCCCcc
Confidence            000 0033445677777776654     22110     00011222   3 566676666666 6   888999865431


Q ss_pred             -eeeeec-----------cCCCeEEEEEeCCCCEEEEEe--C-C-------eEEEEECCCCeEEEEEeCCCCCeEEEEEc
Q 005235          532 -HRIPFK-----------LHGLPVSSVFHPTRSIFFVST--K-K-------NIRVYDLLKQRLIKKLETGLKEVSSIAIH  589 (707)
Q Consensus       532 -~~~~~~-----------~~~~V~~v~fspd~~~l~v~s--d-g-------~I~iwDl~~~~~~~~l~~~~~~I~sl~~s  589 (707)
                       ....+.           .......++|+|++..++++.  + +       .+.++|+.+++.+.++..+. ...+|+|+
T Consensus       244 ~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s  322 (368)
T 1mda_H          244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAA  322 (368)
T ss_dssp             EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEEC
T ss_pred             eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEEC
Confidence             101111           011223378999999988763  3 3       67799999999998887663 68899999


Q ss_pred             CCCCE-EEEEE-CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcC
Q 005235          590 PAGDN-LIVGS-REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR  633 (707)
Q Consensus       590 pdg~~-L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafsp  633 (707)
                      |+|+. +++.. .++.|.++|+.+. +.++++..... -..+++++
T Consensus       323 ~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          323 QDGASDNYANSAGTEVLDIYDAASD-QDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             CSSSCEEEEEETTTTEEEEEESSSC-EEEEECCCCSC-CCEEECCC
T ss_pred             CCCCEEEEEccCCCCeEEEEECCCC-cEEEEEECCCC-CCEEEeec
Confidence            99984 55555 5899999999987 77787775543 34566554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.69  E-value=3.4e-06  Score=86.15  Aligned_cols=203  Identities=9%  Similarity=0.008  Sum_probs=137.2

Q ss_pred             CeEEEEEecC--CcEEEEEEccCCCccEEEEEe---CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEec
Q 005235          408 GRCLRVLEIG--EAIQYVAWNPLPELPVLAVSV---GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQ  482 (707)
Q Consensus       408 g~~l~~l~~~--~~V~~v~~spdg~~~lla~s~---d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~  482 (707)
                      .+.+.++.+.  .....++|+|++  .|+.++.   ++.|.++|+.++...                        ...  
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg--~Lyvstg~~~~s~v~~iD~~tg~v~------------------------~~i--   60 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAEND--TLFESTGLYGRSSVRQVALQTGKVE------------------------NIH--   60 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTT--EEEEEECSTTTCEEEEEETTTCCEE------------------------EEE--
T ss_pred             ceEEEEEECCCCCCcccEEEeCCC--eEEEECCCCCCCEEEEEECCCCCEE------------------------EEE--
Confidence            4567777774  346899999987  5666553   578999998876321                        000  


Q ss_pred             CCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCe
Q 005235          483 HDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKN  561 (707)
Q Consensus       483 ~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~  561 (707)
                             ..+.......++++  |+.|..+...  .+.+.++|..+.+.. ..+... ......+++++..++++. ++.
T Consensus        61 -------~l~~~~fgeGi~~~--g~~lyv~t~~--~~~v~viD~~t~~v~-~~i~~g-~~~g~glt~Dg~~l~vs~gs~~  127 (266)
T 2iwa_A           61 -------KMDDSYFGEGLTLL--NEKLYQVVWL--KNIGFIYDRRTLSNI-KNFTHQ-MKDGWGLATDGKILYGSDGTSI  127 (266)
T ss_dssp             -------ECCTTCCEEEEEEE--TTEEEEEETT--CSEEEEEETTTTEEE-EEEECC-SSSCCEEEECSSSEEEECSSSE
T ss_pred             -------ecCCCcceEEEEEe--CCEEEEEEec--CCEEEEEECCCCcEE-EEEECC-CCCeEEEEECCCEEEEECCCCe
Confidence                   01111122345554  5566665542  249999999988877 667222 112244666888888776 789


Q ss_pred             EEEEECCCCeEEEEEeCCCC-----CeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-------------C
Q 005235          562 IRVYDLLKQRLIKKLETGLK-----EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-------------P  623 (707)
Q Consensus       562 I~iwDl~~~~~~~~l~~~~~-----~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-------------~  623 (707)
                      |.++|..+.+.+.++.....     .++.+.|. +|...+....++.|.+.|..++ +.+..+...             .
T Consensus       128 l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~~~~~~~~  205 (266)
T 2iwa_A          128 LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG-TLLGWILLPNLRKKLIDEGFRDI  205 (266)
T ss_dssp             EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC-CEEEEEECHHHHHHHHHTTCTTC
T ss_pred             EEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC-cEEEEEECCCccccccccccccc
Confidence            99999999988888875422     36788888 6754444445789999999987 667776532             1


Q ss_pred             CCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235          624 KDITNVAFHRSYP-LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       624 ~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~  653 (707)
                      ...+.++|+|++. +|+++...+.|.+.++.
T Consensus       206 ~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          206 DVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            3568999999986 66677778888888654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.64  E-value=1.2e-06  Score=91.25  Aligned_cols=213  Identities=12%  Similarity=0.083  Sum_probs=146.9

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      ...++.|+.++.|..+|.. |+.+..+.. ...+.++...+++  .+++++.++.|..++.. +.               
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~---------------  167 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GT---------------  167 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SC---------------
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CC---------------
Confidence            4567888889999999988 887776665 4456677777777  58887778889888865 32               


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS  545 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v  545 (707)
                                 .+|..        ......+.++.+.++|..++..   +   .|..++ .++... ..+ .....+.++
T Consensus       168 -----------~~~~~--------~~~~~~~~~~~~d~~g~l~v~t---~---~l~~~d-~~g~~~-~~~~~~~~~~~~~  220 (330)
T 3hxj_A          168 -----------EKWRF--------KTNDAITSAASIGKDGTIYFGS---D---KVYAIN-PDGTEK-WNFYAGYWTVTRP  220 (330)
T ss_dssp             -----------EEEEE--------ECSSCCCSCCEECTTCCEEEES---S---SEEEEC-TTSCEE-EEECCSSCCCSCC
T ss_pred             -----------EeEEE--------ecCCCceeeeEEcCCCEEEEEe---C---EEEEEC-CCCcEE-EEEccCCcceece
Confidence                       12211        1123345666777777755544   4   688888 555544 444 444668888


Q ss_pred             EEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC
Q 005235          546 VFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       546 ~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      ++.+++.+.+.+.++.|..+|. +++.+..+......+.++.+.++| .|.+|+.+|.|..+|. ++ +....+......
T Consensus       221 ~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g-~~~~~~~~~~~~  296 (330)
T 3hxj_A          221 AISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DG-TEKWNFETGSWI  296 (330)
T ss_dssp             EECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TS-CEEEEEECSSCC
T ss_pred             EECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CC-cEEEEEEcCCcc
Confidence            8888886655555788999984 566666666554555666776555 6777888889999996 44 445555555566


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          626 ITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      +.++...+++.++ .++.+|.+++..
T Consensus       297 ~~~~~~d~~g~l~-~gt~~G~~~~~~  321 (330)
T 3hxj_A          297 IATPVIDENGTIY-FGTRNGKFYALF  321 (330)
T ss_dssp             CSCCEECTTCCEE-EECTTSCEEEEE
T ss_pred             ccceEEcCCCEEE-EEcCCCeEEEEe
Confidence            7788887888755 578899999884

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.63  E-value=7.4e-07  Score=100.13  Aligned_cols=235  Identities=10%  Similarity=0.083  Sum_probs=147.1

Q ss_pred             cEEE-EEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEE-c-cCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          389 YLEY-KGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAW-N-PLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       389 ~~l~-sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~-s-pdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      .++| +...++.|.+-|+.+.++...+..  ...+..+++ + |++. ++++++... +=+  ...+.. +..       
T Consensus       102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~-~p~--~~dg~~-l~~-------  169 (595)
T 1fwx_A          102 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDE-TPL--VNDGTN-MED-------  169 (595)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSC-EES--SCSSSS-TTC-------
T ss_pred             CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccc-ccc--CCCCcc-ccc-------
Confidence            3444 445567799999999999996655  577899998 5 8884 566554221 100  000000 000       


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCc-------------------------
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGES-------------------------  518 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~-------------------------  518 (707)
                            ....++.+.+.|..+......+.-.+....++++|+|+++++.+.+...                         
T Consensus       170 ------~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~  243 (595)
T 1fwx_A          170 ------VANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  243 (595)
T ss_dssp             ------GGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             ------ccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence                  0011223444444443332222222345667788888888888765411                         


Q ss_pred             ----------cEEEEEECCC--CceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe------------E
Q 005235          519 ----------RAIFMHQLSK--KLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR------------L  572 (707)
Q Consensus       519 ----------~~V~Iwdl~~--~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~------------~  572 (707)
                                +.|.|.|..+  +......+.......++.|+|||++++++.  +.+|.++|+.+.+            .
T Consensus       244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             HHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             eccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence                      2477777776  333113333344677899999999999988  7999999998653            4


Q ss_pred             EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---------CcceEEeecCCCCE-----EEEEEcCCCCEE
Q 005235          573 IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS---------SKPYRVLKCHPKDI-----TNVAFHRSYPLF  638 (707)
Q Consensus       573 ~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~---------~~~~~~l~~h~~~I-----~~vafspdg~ll  638 (707)
                      +..+..+ .....++|+|+|...++...|+.|.+||++..         ...+.++..|-.+-     .++.++|||++|
T Consensus       324 ~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l  402 (595)
T 1fwx_A          324 VAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL  402 (595)
T ss_dssp             EECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred             EEEcCCC-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence            5555555 45789999999944455667899999999761         24566666664432     123458999988


Q ss_pred             EEEe
Q 005235          639 ASCS  642 (707)
Q Consensus       639 aSgs  642 (707)
                      +++.
T Consensus       403 ~~~N  406 (595)
T 1fwx_A          403 VCLS  406 (595)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            8875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.62  E-value=5.4e-06  Score=83.95  Aligned_cols=191  Identities=12%  Similarity=0.103  Sum_probs=128.8

Q ss_pred             ccCCCe--EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEEC
Q 005235          492 RHFKMV--SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDL  567 (707)
Q Consensus       492 ~h~~~V--~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl  567 (707)
                      .|....  ..+.|+ ++..+.+.+.+| ...|+++|+.+++.. ..+............+++..|++++  ++.+.+||.
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g-~S~v~~vD~~Tgkv~-~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~  114 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNG-RSSIRKVDIESGKTL-QQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNI  114 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETT-EEEEEEECTTTCCEE-EEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCC-CceEEEEECCCCcEE-EEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence            555444  788998 666666666554 569999999999887 6653334444433444566788777  799999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC--C---CCEEEEEEcCCCCEEEEEe
Q 005235          568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH--P---KDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       568 ~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h--~---~~I~~vafspdg~llaSgs  642 (707)
                      .+.+.+.++....   ....++++|..|+.+..+++|.++|..+. +....+.-.  .   ..++.+.|. +|.++|..-
T Consensus       115 ~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w  189 (262)
T 3nol_A          115 RNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-DGEIFANVW  189 (262)
T ss_dssp             TTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             ccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence            9999999988643   22334467888877777788999999877 555555421  1   345667886 787777776


Q ss_pred             CCCcEEEEecccccCCCCCCcccceEEeeCC-----C---CCCCCCeeEEEEcCCCCEEEEEeCC
Q 005235          643 DDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-----T---SSNGRGVMDCKFHPRQPWLFTAGAD  699 (707)
Q Consensus       643 ~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-----~---~~~~~gV~~l~fspdg~~L~s~g~D  699 (707)
                      .+..|.+.      |..++..   +..+.-.     .   .......+.|||+|++..|+.+|..
T Consensus       190 ~~~~I~vI------Dp~tG~V---~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          190 QTNKIVRI------DPETGKV---TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             TSSEEEEE------CTTTCBE---EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             cCCeEEEE------ECCCCcE---EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            78889999      5545544   2222211     0   0011226899999999988877753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.60  E-value=1.6e-05  Score=80.70  Aligned_cols=209  Identities=11%  Similarity=0.053  Sum_probs=132.3

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeee
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      .+.++++....+.|.+++..++.....+.. .....+|++.|++. .++.+. ..+.|.++++.....            
T Consensus        47 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~-~lyv~d~~~~~I~~~~~~g~~~------------  113 (267)
T 1npe_A           47 DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQR------------  113 (267)
T ss_dssp             TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSC------------
T ss_pred             CCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCC-eEEEEECCCCEEEEEEcCCCCE------------
Confidence            445666666788999999876654333333 35789999999753 455444 456788877643210            


Q ss_pred             cccccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCe
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLP  542 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V  542 (707)
                                             ..+. ........++++|++..|..+......+.|..+++...... ... ......
T Consensus       114 -----------------------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~-~~~~~~~~~P  169 (267)
T 1npe_A          114 -----------------------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLP  169 (267)
T ss_dssp             -----------------------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCE
T ss_pred             -----------------------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE-EEEECCCCCC
Confidence                                   0111 11245689999997666655554311248888888754332 222 333568


Q ss_pred             EEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEe
Q 005235          543 VSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVL  619 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l  619 (707)
                      ..++++|++..|+++.  .+.|.++|+........+.. ......|++.  +..|+++. ..+.|.++|..++ +....+
T Consensus       170 ~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g-~~~~~i  245 (267)
T 1npe_A          170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS-KEMDTF  245 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred             cEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC-CceEEE
Confidence            8999999988888776  58999999976544433433 3445677765  45555554 5688999999876 566666


Q ss_pred             ecCC-CCEEEEEEcCCCC
Q 005235          620 KCHP-KDITNVAFHRSYP  636 (707)
Q Consensus       620 ~~h~-~~I~~vafspdg~  636 (707)
                      .... .....+++.|++.
T Consensus       246 ~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          246 HPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             CCSSCCCCCCEEEECSCC
T ss_pred             ccccccccceeeecCccC
Confidence            5332 2356778877754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.60  E-value=5.2e-06  Score=96.65  Aligned_cols=246  Identities=11%  Similarity=0.027  Sum_probs=155.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEecC------CcEEEEEEccCCCccEEEEEe------CCeEEEEECCCCCchh
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIG------EAIQYVAWNPLPELPVLAVSV------GQDVLILNTGLGNEEE  454 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~------~~V~~v~~spdg~~~lla~s~------d~~V~lwd~~~~~~~~  454 (707)
                      ....+|.++.|+.|..+|..||+.+..+...      ..+.+.-...++  .+++++.      ++.|..||..++...-
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC--EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            3568889999999999999999999888764      122221111234  4555553      6889999998886532


Q ss_pred             cccc------------------------cce----------eeecc----c-ccccCCC-------------------Cc
Q 005235          455 QRRV------------------------KDL----------LHVET----P-TAPDDNM-------------------AS  476 (707)
Q Consensus       455 ~~~~------------------------~~v----------~~~~~----~-~~~~~~d-------------------~~  476 (707)
                      ....                        ...          ....+    . +..+..+                   +.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            1110                        000          00011    0 1112211                   24


Q ss_pred             EEEEecCCccceEEe---ccC-------CCeEEEEEcCCC---CEEEEEeCCCCccEEEEEECCCCceeeeee--ccC--
Q 005235          477 IVSWLQHDKLDGIRL---RHF-------KMVSSVEWHRRG---DYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLH--  539 (707)
Q Consensus       477 i~iW~~~~~~~~~~~---~h~-------~~V~~v~~sp~g---~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~--  539 (707)
                      +..++..++...-..   .|.       .....+....+|   ..+++++.+|   .|.++|..+++.. ..+  ...  
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G---~l~~lD~~tG~~l-~~~~~~~~~~  360 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNG---FFFVLDRTNGKFI-SAKNFVPVNW  360 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTS---EEEEEETTTCCEE-EEEESSCCSS
T ss_pred             EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCC---EEEEEECCCCCEe-ccccccccCc
Confidence            777777766553321   121       222333444477   6788888887   9999999998875 333  110  


Q ss_pred             -------CC-e------------------------EEEEEeCCCCEEEEEe-C---------------------------
Q 005235          540 -------GL-P------------------------VSSVFHPTRSIFFVST-K---------------------------  559 (707)
Q Consensus       540 -------~~-V------------------------~~v~fspd~~~l~v~s-d---------------------------  559 (707)
                             +. +                        ..++|+|+..++++.. +                           
T Consensus       361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  440 (677)
T 1kb0_A          361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW  440 (677)
T ss_dssp             EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred             ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence                   00 0                        2578999988888753 1                           


Q ss_pred             ----------------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-
Q 005235          560 ----------------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-  622 (707)
Q Consensus       560 ----------------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-  622 (707)
                                      +.|..||+.+++.+.++..+ ..+.+..+...|.++++|+.||.|++||+.++ +.+..+... 
T Consensus       441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~  518 (677)
T 1kb0_A          441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEAPTGT  518 (677)
T ss_dssp             CCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred             ccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCC-ceeeeeeCCC
Confidence                            67999999999999888754 33444556667889999999999999999988 666666533 


Q ss_pred             CCCEEEEEEcCCCCEEEE
Q 005235          623 PKDITNVAFHRSYPLFAS  640 (707)
Q Consensus       623 ~~~I~~vafspdg~llaS  640 (707)
                      .....-+.|..+|+.+++
T Consensus       519 ~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          519 GVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CCCSCCEEEEETTEEEEE
T ss_pred             CcccCCEEEEeCCEEEEE
Confidence            333345677788874443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.59  E-value=5.4e-06  Score=96.75  Aligned_cols=247  Identities=11%  Similarity=0.031  Sum_probs=153.4

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecC-C--cEEEEEEcc---CCCccEEEEEe------CCeEEEEECCCCCchhc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIG-E--AIQYVAWNP---LPELPVLAVSV------GQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~-~--~V~~v~~sp---dg~~~lla~s~------d~~V~lwd~~~~~~~~~  455 (707)
                      ...+|.++.|+.|..+|..||+.+..+... .  ....+..+|   ++  .+++++.      ++.|..||..++...-.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG--KVVIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC--EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            467889999999999999999999887653 1  001111122   44  4555442      57899999998865322


Q ss_pred             cccc--------------------------------cee-eecc----c-ccccCCCC-------------------cEE
Q 005235          456 RRVK--------------------------------DLL-HVET----P-TAPDDNMA-------------------SIV  478 (707)
Q Consensus       456 ~~~~--------------------------------~v~-~~~~----~-~~~~~~d~-------------------~i~  478 (707)
                      ....                                .+. ...+    . +..+..++                   .+.
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            1100                                000 0111    0 22222222                   378


Q ss_pred             EEecCCccceEE-ec--cC-------CCeEEEEEcCCCC---EEEEEeCCCCccEEEEEECCCCceeeeee--ccC----
Q 005235          479 SWLQHDKLDGIR-LR--HF-------KMVSSVEWHRRGD---YLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLH----  539 (707)
Q Consensus       479 iW~~~~~~~~~~-~~--h~-------~~V~~v~~sp~g~---~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~----  539 (707)
                      .||..++...-. ..  |.       ..+.......+|.   .++.++.+|   .++++|..+++.. ...  ...    
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~l-~~~~~~~~~w~~  354 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNG---FFYVIDRATGELL-SAKGIVPQSWTK  354 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS---EEEEEETTTCCEE-EEEESSCCSSEE
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCC---eEEEEECCCCCEe-cccccccccccc
Confidence            888877665432 11  21       1222223333565   788888877   9999999988765 221  100    


Q ss_pred             ----------------------------------CCeEEEEEeCCCCEEEEEe---------------------------
Q 005235          540 ----------------------------------GLPVSSVFHPTRSIFFVST---------------------------  558 (707)
Q Consensus       540 ----------------------------------~~V~~v~fspd~~~l~v~s---------------------------  558 (707)
                                                        ..-..++|+|+..++++.+                           
T Consensus       355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  434 (689)
T 1yiq_A          355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL  434 (689)
T ss_dssp             EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred             ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCc
Confidence                                              0112378999888888752                           


Q ss_pred             -------------------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe
Q 005235          559 -------------------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL  619 (707)
Q Consensus       559 -------------------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l  619 (707)
                                         ++.|+.||+.+++.+.++..+... ..-.+...|.+|++|+.||.|+.||.+++ +.+..+
T Consensus       435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~gt~dg~l~a~D~~tG-~~lw~~  512 (689)
T 1yiq_A          435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTAGNLVFEGSADGRVIAYAADTG-EKLWEQ  512 (689)
T ss_dssp             EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEE
T ss_pred             cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-cCccceECCCEEEEECCCCcEEEEECCCC-ccceee
Confidence                               267999999999999888766433 33355567889999999999999999998 666666


Q ss_pred             ecCCC-CEEEEEEcCCCCE-EEEEe
Q 005235          620 KCHPK-DITNVAFHRSYPL-FASCS  642 (707)
Q Consensus       620 ~~h~~-~I~~vafspdg~l-laSgs  642 (707)
                      +.... ...-+.|..+|+. +++.+
T Consensus       513 ~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          513 PAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             ECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eCCCCcccCceEEEECCEEEEEEEe
Confidence            54432 2345778888884 44433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.58  E-value=7.5e-09  Score=111.64  Aligned_cols=177  Identities=11%  Similarity=0.028  Sum_probs=94.6

Q ss_pred             CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCC-
Q 005235          505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKE-  582 (707)
Q Consensus       505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~-  582 (707)
                      ++..+++++.++   .|..||..+++.. ..+.. +.+.+..+..++..+++++ |+.|+.||..+++.+..+..+... 
T Consensus         8 ~~~~v~~gs~dg---~v~a~d~~tG~~~-W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDG---SLHAVSKRTGSIK-WTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTS---EEEEEETTTCCEE-EEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEcCCC---EEEEEECCCCCEE-EEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence            578899999888   9999999999887 66633 5566666667777777765 899999999988876665433111 


Q ss_pred             e-EEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCC
Q 005235          583 V-SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQN  661 (707)
Q Consensus       583 I-~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~  661 (707)
                      + .+..+. .+..|++|+.++.|+.||..++ +....+..+.    .+.++|++..+++++.|+.|+.||.      .++
T Consensus        83 ~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~------~tG  150 (369)
T 2hz6_A           83 VQASPCRS-SDGILYMGKKQDIWYVIDLLTG-EKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDT------KTR  150 (369)
T ss_dssp             HTTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCS------SSS
T ss_pred             cccCceEe-cCCEEEEEeCCCEEEEEECCCC-cEEEEecCCC----cccccccCCEEEEEecCCEEEEEEC------CCC
Confidence            1 011111 3557888999999999999988 4555555443    2456778889999999999999954      444


Q ss_pred             CcccceEEeeCCCCCCCCCeeEEEEcCCC---CEEEEEeCCCcEEEEeC
Q 005235          662 PLIVPLEILRGHTSSNGRGVMDCKFHPRQ---PWLFTAGADSVIRLYCH  707 (707)
Q Consensus       662 ~~~~pl~~l~gh~~~~~~gV~~l~fspdg---~~L~s~g~Dg~IrlWdl  707 (707)
                      ...   -.+..+.      ....+++++.   ..+++++.||.|..||.
T Consensus       151 ~~~---W~~~~~~------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          151 ELR---WNATYFD------YAASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             SCC---CEEEEEE------ECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             CEE---EeEeccc------ccCccccCCccccceEEEECCCCEEEEEEC
Confidence            332   1111110      1112233332   45677888898888873

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.52  E-value=0.00029  Score=83.36  Aligned_cols=294  Identities=8%  Similarity=0.088  Sum_probs=178.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc---------c
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLE--IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR---------V  458 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~--~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~---------~  458 (707)
                      .++.|+.++-|..|+..+++......  ....|.++...+++  .+.+++.++.|.+|+..++.......         .
T Consensus       185 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g--~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~  262 (795)
T 4a2l_A          185 QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT--RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISS  262 (795)
T ss_dssp             EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT--EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSC
T ss_pred             CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC--CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCC
Confidence            45556766558899988776543211  25678999988888  57777777679999987653211111         1


Q ss_pred             cceeeeccc----ccccCCCCcEEEEecCCccceEEec--------cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEEC
Q 005235          459 KDLLHVETP----TAPDDNMASIVSWLQHDKLDGIRLR--------HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQL  526 (707)
Q Consensus       459 ~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~~~--------h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl  526 (707)
                      ..+.++...    +..++.. -+.+|+...........        ....|.++...++|...+ |+.++   .|..++.
T Consensus       263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~---Gl~~~~~  337 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFG---GLNYYHP  337 (795)
T ss_dssp             SBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSS---CEEEECG
T ss_pred             CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCC---CeEEeCC
Confidence            223333221    3334333 46777766544332211        235699999999888555 44444   6788876


Q ss_pred             CCCceeeeee-c-----cCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeC--------CCCCeEEEEEcCCC
Q 005235          527 SKKLSHRIPF-K-----LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLET--------GLKEVSSIAIHPAG  592 (707)
Q Consensus       527 ~~~~~~~~~~-~-----~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~--------~~~~I~sl~~spdg  592 (707)
                      .+........ .     ....|.+++..+++.+.+...++.|..||..+++...-...        ....|.++...++|
T Consensus       338 ~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  417 (795)
T 4a2l_A          338 IRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK  417 (795)
T ss_dssp             GGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred             CcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence            5543320111 1     23468999998888755543367899999887654332211        23569999999888


Q ss_pred             CEEEEEECCCcEEEEECCCCCcceEEee-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccce
Q 005235          593 DNLIVGSREGKLCWFDMDLSSKPYRVLK-----CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPL  667 (707)
Q Consensus       593 ~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-----~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl  667 (707)
                      ..|.+|+.++-|.+||..++ + +..+.     .....|.++...++|.+.+... . -|.+|+..      +..    .
T Consensus       418 ~~lWigt~~~Gl~~~d~~~~-~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~------~~~----~  483 (795)
T 4a2l_A          418 SLVYIGTHAGGLSILHRNSG-Q-VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPE------QRS----F  483 (795)
T ss_dssp             TEEEEEETTTEEEEEETTTC-C-EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETT------TTE----E
T ss_pred             CEEEEEeCcCceeEEeCCCC-c-EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCC------CCe----E
Confidence            86788888888999998865 2 33333     1345799999999898666554 4 48888532      211    1


Q ss_pred             EEeeCC---CCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          668 EILRGH---TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       668 ~~l~gh---~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      ..+...   .......|.++...++|.+.+... .| |..|+
T Consensus       484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~  523 (795)
T 4a2l_A          484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFK  523 (795)
T ss_dssp             EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEE
T ss_pred             EEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEe
Confidence            111110   000012289999998888665544 44 55554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.51  E-value=6.2e-05  Score=78.25  Aligned_cols=237  Identities=11%  Similarity=0.069  Sum_probs=139.9

Q ss_pred             CeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc
Q 005235          408 GRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL  486 (707)
Q Consensus       408 g~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~  486 (707)
                      .+.+..+.......+++|++++  .|+++. .++.|..|+....                         ....|      
T Consensus        22 ~~~~~~~p~~~~pegia~~~~g--~lyv~d~~~~~I~~~d~~g~-------------------------~~~~~------   68 (306)
T 2p4o_A           22 AKIITSFPVNTFLENLASAPDG--TIFVTNHEVGEIVSITPDGN-------------------------QQIHA------   68 (306)
T ss_dssp             EEEEEEECTTCCEEEEEECTTS--CEEEEETTTTEEEEECTTCC-------------------------EEEEE------
T ss_pred             ceEeEeCCCCCCcceEEECCCC--CEEEEeCCCCeEEEECCCCc-------------------------eEEEE------
Confidence            4455555555678899999998  466665 5678888775432                         11122      


Q ss_pred             ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235          487 DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIR  563 (707)
Q Consensus       487 ~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~  563 (707)
                           .....+..+++.++|+++++..... ...|..++..++... ...  ........+++.+.+..+++.. .+.|.
T Consensus        69 -----~~~~~p~gia~~~dG~l~vad~~~~-~~~v~~~d~~~g~~~-~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~  141 (306)
T 2p4o_A           69 -----TVEGKVSGLAFTSNGDLVATGWNAD-SIPVVSLVKSDGTVE-TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIW  141 (306)
T ss_dssp             -----ECSSEEEEEEECTTSCEEEEEECTT-SCEEEEEECTTSCEE-EEEECTTCSCEEEEEESSSSEEEEEETTTTEEE
T ss_pred             -----eCCCCceeEEEcCCCcEEEEeccCC-cceEEEEcCCCCeEE-EEEeCCCccccCcccccCCCcEEEEECCCCeEE
Confidence                 1234578899999999666554322 125667777766543 222  2223345566555554444443 78999


Q ss_pred             EEECCCCeE-EEEEe---------CCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCc--ceEEeecCCCCEEEEE
Q 005235          564 VYDLLKQRL-IKKLE---------TGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSK--PYRVLKCHPKDITNVA  630 (707)
Q Consensus       564 iwDl~~~~~-~~~l~---------~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~--~~~~l~~h~~~I~~va  630 (707)
                      ++|..+++. +....         ......+.|  +|+|.+|+++ +..++|..||++....  ....+.. ......++
T Consensus       142 ~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~  218 (306)
T 2p4o_A          142 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFA  218 (306)
T ss_dssp             EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEE
T ss_pred             EEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeE
Confidence            999876532 21111         111234555  7888776555 4567899999874211  1222221 12356789


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc---CCCCEEEEEeCC
Q 005235          631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH---PRQPWLFTAGAD  699 (707)
Q Consensus       631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs---pdg~~L~s~g~D  699 (707)
                      ++++|.++++....+.|.+|+      .. +.. ..+..+.....    ...+++|.   |++..|+.++..
T Consensus       219 vd~dG~l~va~~~~~~V~~~~------~~-G~~-~~~~~~~~~~~----~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          219 FDVEGNLYGATHIYNSVVRIA------PD-RST-TIIAQAEQGVI----GSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EBTTCCEEEECBTTCCEEEEC------TT-CCE-EEEECGGGTCT----TEEEEEECCSTTTTTEEEEEECT
T ss_pred             ECCCCCEEEEeCCCCeEEEEC------CC-CCE-EEEeecccccC----CceEEEEecccCCCCEEEEECCC
Confidence            999999888877788999994      22 211 01112222212    28999999   898888766543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.51  E-value=0.00013  Score=74.02  Aligned_cols=191  Identities=14%  Similarity=0.051  Sum_probs=121.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR  571 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~  571 (707)
                      ..+..++|++++..|..+...  .+.|..+++...... ..+ ........++++|++..|+++.  .+.|.++++....
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~  112 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDIS--EPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETT--TTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CcEEEEEEecCCCEEEEEECC--CCEEEEEecCCCCcE-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence            356899999977776666542  248999999876543 333 3335789999999877777776  6899999987543


Q ss_pred             EEEEEeCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCCcceEEee-cCCCCEEEEEEcCCCC-EEEEEeCCCc
Q 005235          572 LIKKLETGLKEVSSIAIHPAGDNLIVGSR---EGKLCWFDMDLSSKPYRVLK-CHPKDITNVAFHRSYP-LFASCSDDCT  646 (707)
Q Consensus       572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~---Dg~I~vwDl~~~~~~~~~l~-~h~~~I~~vafspdg~-llaSgs~Dg~  646 (707)
                      ....+.........++++|++..|..+..   .+.|..++++..  ....+. ..-.....+++++++. ++++....+.
T Consensus       113 ~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~--~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~  190 (267)
T 1npe_A          113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (267)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC--CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence            22223233356789999997666665554   368989998743  223332 2334578999999866 4455556788


Q ss_pred             EEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235          647 AYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVIRLYC  706 (707)
Q Consensus       647 I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~IrlWd  706 (707)
                      |.+++..      ....   ...+.+-. .    ...++..  +..|+.+. ..+.|..++
T Consensus       191 I~~~~~~------g~~~---~~~~~~~~-~----P~gi~~d--~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          191 AECLNPA------QPGR---RKVLEGLQ-Y----PFAVTSY--GKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             EEEEETT------EEEE---EEEEECCC-S----EEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             EEEEecC------CCce---EEEecCCC-C----ceEEEEe--CCEEEEEECCCCeEEEEe
Confidence            9999653      1111   11222211 1    4566654  45555444 557787775

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.48  E-value=2.3e-05  Score=78.53  Aligned_cols=190  Identities=12%  Similarity=0.093  Sum_probs=125.5

Q ss_pred             ccCC--CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEEC
Q 005235          492 RHFK--MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDL  567 (707)
Q Consensus       492 ~h~~--~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl  567 (707)
                      .|..  -...+.|+. +..+.+.+..| ...|+++|+.+++.. ..+............+.+..|+..+  ++.+.+||.
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g-~S~v~~vD~~tgkv~-~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETG-RSSVRKVDLETGRIL-QRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTT-SCEEEEEETTTCCEE-EEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCC-CceEEEEECCCCCEE-EEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence            4543  456889986 55555555544 569999999999887 6553333443333334466777777  899999999


Q ss_pred             CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC-----CCEEEEEEcCCCCEEEEEe
Q 005235          568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP-----KDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       568 ~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~-----~~I~~vafspdg~llaSgs  642 (707)
                      .+.+.+.++...... ..|  .+++..|+++..++.|.++|..+. +...++.-..     ..++.+.|. +|.++|..-
T Consensus        93 ~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw  167 (243)
T 3mbr_X           93 ATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW  167 (243)
T ss_dssp             TTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             CcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence            999999999865322 233  356777777777889999999887 5555554321     345667766 677777666


Q ss_pred             CCCcEEEEecccccCCCCCCcccceEEeeCC-----C----CCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          643 DDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-----T----SSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       643 ~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-----~----~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                      .+..|.+.      |..++..   +..+.-.     .    .....-.+.|+|+|++..|+.+|.
T Consensus       168 ~s~~I~vI------Dp~tG~V---~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          168 LTSRIARI------DPASGKV---VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTTEEEEE------CTTTCBE---EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEE------ECCCCCE---EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            67788888      4545544   2222211     0    001112789999999888877764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.48  E-value=5.8e-05  Score=78.90  Aligned_cols=227  Identities=14%  Similarity=0.075  Sum_probs=143.6

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEec---------------------CCcEEEEEEcc-CCCccEEEEEeCCeEEE
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI---------------------GEAIQYVAWNP-LPELPVLAVSVGQDVLI  444 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---------------------~~~V~~v~~sp-dg~~~lla~s~d~~V~l  444 (707)
                      .+.+++++..++.|..|+..++... .+..                     ...+.+|++.+ ++  .|+++...+.|..
T Consensus        29 ~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g--~l~v~d~~~~i~~  105 (322)
T 2fp8_A           29 TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN--QLYIVDCYYHLSV  105 (322)
T ss_dssp             TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT--EEEEEETTTEEEE
T ss_pred             CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC--cEEEEECCCCEEE
Confidence            4567888889999999998776543 3321                     13578999997 66  5777766666777


Q ss_pred             EECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcC-CCCEEEEEeCC-------
Q 005235          445 LNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHR-RGDYLSTVMPA-------  515 (707)
Q Consensus       445 wd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp-~g~~lat~s~d-------  515 (707)
                      +++.++..                         ..+..      ... ........+++.+ +|...++-...       
T Consensus       106 ~d~~~g~~-------------------------~~~~~------~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A          106 VGSEGGHA-------------------------TQLAT------SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             ECTTCEEC-------------------------EEEES------EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred             EeCCCCEE-------------------------EEecc------cCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence            77543211                         11100      000 0123467899999 89877665321       


Q ss_pred             -------CCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe--EEEEEeCCCCCeE
Q 005235          516 -------GESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR--LIKKLETGLKEVS  584 (707)
Q Consensus       516 -------g~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~--~~~~l~~~~~~I~  584 (707)
                             ...+.|..++..++... ...........++|+|++..|+++.  .+.|.+|++....  ....+....+ ..
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~  232 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTKETT-LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PG  232 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTTEEE-EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EE
T ss_pred             ceehcccCCCceEEEEeCCCCEEE-EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CC
Confidence                   01247888888766543 2223334556899999999887775  5899999987421  1111211223 78


Q ss_pred             EEEEcCCCCEEEEEEC----------CCcEEEEECCCCCcceEEeecCC----CCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          585 SIAIHPAGDNLIVGSR----------EGKLCWFDMDLSSKPYRVLKCHP----KDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       585 sl~~spdg~~L~sGs~----------Dg~I~vwDl~~~~~~~~~l~~h~----~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      .|+++++|.+.++...          .+.|..+|.. + +.+..+....    ..++++++ .++.++++....+.|.++
T Consensus       233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G-~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~  309 (322)
T 2fp8_A          233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-G-NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL  309 (322)
T ss_dssp             EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-S-CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred             CeEECCCCCEEEEecCcccccccCCCccEEEEECCC-C-CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence            8999999987666544          4668888875 3 5566665432    34667776 466777776677888888


Q ss_pred             ec
Q 005235          651 HG  652 (707)
Q Consensus       651 d~  652 (707)
                      +.
T Consensus       310 ~~  311 (322)
T 2fp8_A          310 VY  311 (322)
T ss_dssp             EC
T ss_pred             ec
Confidence            54

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.45  E-value=6.9e-05  Score=78.32  Aligned_cols=244  Identities=10%  Similarity=0.035  Sum_probs=143.1

Q ss_pred             cEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccce----------
Q 005235          419 AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDG----------  488 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~----------  488 (707)
                      ...+++|.+++ ..+++...++.|..|+..++.                         +..|........          
T Consensus        20 ~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~   73 (322)
T 2fp8_A           20 APNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSG-------------------------FVDFAYASPYWNKAFCENSTDA   73 (322)
T ss_dssp             CCCCEECCTTC-SSEEEECTTSEEEEECCTTTC-------------------------EEEEEESCTTCCHHHHTTCCCG
T ss_pred             CceEEEEcCCC-CEEEEEcCCCeEEEECCCCCc-------------------------eEEEecccccccccccccccch
Confidence            45778899988 347777778889888765431                         222211100000          


Q ss_pred             EEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECCCCceeeeee-c-----cCCCeEEEEEeC-CCCEEEEEeC-
Q 005235          489 IRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-K-----LHGLPVSSVFHP-TRSIFFVSTK-  559 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~-----~~~~V~~v~fsp-d~~~l~v~sd-  559 (707)
                      ........+..+++.+ +|. |.++...+   .|..++..++...  .+ .     ....+..+++.+ +|.+.++... 
T Consensus        74 ~~~~~~~~p~gi~~~~~~g~-l~v~d~~~---~i~~~d~~~g~~~--~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~  147 (322)
T 2fp8_A           74 EKRPLCGRTYDISYNLQNNQ-LYIVDCYY---HLSVVGSEGGHAT--QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVST  147 (322)
T ss_dssp             GGHHHHCCEEEEEEETTTTE-EEEEETTT---EEEEECTTCEECE--EEESEETTEECSCEEEEEECTTTCCEEEEESCS
T ss_pred             hccccCCCCceEEEcCCCCc-EEEEECCC---CEEEEeCCCCEEE--EecccCCCCcccccceEEEecCCCEEEEECCcc
Confidence            0001123578899997 555 44454434   5788887654322  22 1     123578899999 9977665432 


Q ss_pred             -----------------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCC-cceEEee
Q 005235          560 -----------------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSS-KPYRVLK  620 (707)
Q Consensus       560 -----------------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~-~~~~~l~  620 (707)
                                       +.|..||..+++...... .......|+++|+|+.|+++ +..+.|.+|++.... .....+.
T Consensus       148 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~  226 (322)
T 2fp8_A          148 LYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV  226 (322)
T ss_dssp             SCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE
T ss_pred             cccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE
Confidence                             678999987776433222 22345679999999876665 556899999987421 1122222


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235          621 CHPKDITNVAFHRSYPLFASCSD----------DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ  690 (707)
Q Consensus       621 ~h~~~I~~vafspdg~llaSgs~----------Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg  690 (707)
                      ...+ ...+++.++|.++++...          .+.|.+++      .. +..   +..+..........+..+++. ++
T Consensus       227 ~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d------~~-G~~---~~~~~~~~g~~~~~~~~~~~~-~g  294 (322)
T 2fp8_A          227 KIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFD------EF-GNI---LEVIPLPPPFAGEHFEQIQEH-DG  294 (322)
T ss_dssp             ECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEEC------TT-SCE---EEEEECCTTTTTSCCCEEEEE-TT
T ss_pred             eCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEEC------CC-CCE---EEEEECCCCCccccceEEEEe-CC
Confidence            2223 788999999997777654          45677773      21 222   334433221001126777773 55


Q ss_pred             CEEEEEeCCCcEEEEeC
Q 005235          691 PWLFTAGADSVIRLYCH  707 (707)
Q Consensus       691 ~~L~s~g~Dg~IrlWdl  707 (707)
                      .++++....+.|..+++
T Consensus       295 ~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          295 LLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             EEEEECSSCSEEEEEEC
T ss_pred             EEEEeecCCCceEEEec
Confidence            55555556778888764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.45  E-value=2.3e-05  Score=91.10  Aligned_cols=192  Identities=14%  Similarity=0.065  Sum_probs=119.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCc-----------E-EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEA-----------I-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~-----------V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~  455 (707)
                      ...+|.++.++.|.-+|..||+.+..+.....           + ..+++. ++  .+++++.++.|..+|..++..   
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~v~~~dg~l~alD~~tG~~---  139 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GD--KVYVGTLDGRLIALDAKTGKA---  139 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BT--EEEEECTTSEEEEEETTTCCE---
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE-CC--EEEEEcCCCEEEEEECCCCCE---
Confidence            35788888899999999999999988865211           1 122332 33  577777889999999887743   


Q ss_pred             ccccceeeecccccccCCCCcEEEEecCCccceEEecc-CCCeEEEEEcCCCCEEEEEeCCC---CccEEEEEECCCCce
Q 005235          456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRH-FKMVSSVEWHRRGDYLSTVMPAG---ESRAIFMHQLSKKLS  531 (707)
Q Consensus       456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h-~~~V~~v~~sp~g~~lat~s~dg---~~~~V~Iwdl~~~~~  531 (707)
                                             +|............. ..++  +    .+..+++++..+   ..+.|..+|..+++.
T Consensus       140 -----------------------~W~~~~~~~~~~~~~~~~P~--v----~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          140 -----------------------IWSQQTTDPAKPYSITGAPR--V----VKGKVIIGNGGAEYGVRGFVSAYDADTGKL  190 (668)
T ss_dssp             -----------------------EEEEECSCTTSSCBCCSCCE--E----ETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             -----------------------eeeeccCCCCCcceecCCCE--E----ECCEEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence                                   343321100000000 1111  1    123444443321   124899999988877


Q ss_pred             eeeee-cc-C------------------------------CCeEEEEEeCCCCEEEEEe-CC------------------
Q 005235          532 HRIPF-KL-H------------------------------GLPVSSVFHPTRSIFFVST-KK------------------  560 (707)
Q Consensus       532 ~~~~~-~~-~------------------------------~~V~~v~fspd~~~l~v~s-dg------------------  560 (707)
                      . -.+ .. .                              .....+++.|...++++++ ++                  
T Consensus       191 ~-W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~  269 (668)
T 1kv9_A          191 A-WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYL  269 (668)
T ss_dssp             E-EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             E-EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence            6 444 10 0                              0112478889888888876 44                  


Q ss_pred             -eEEEEECCCCeEEEEEeCC--C-------CCeEEEEEcCCCC---EEEEEECCCcEEEEECCCCCcce
Q 005235          561 -NIRVYDLLKQRLIKKLETG--L-------KEVSSIAIHPAGD---NLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       561 -~I~iwDl~~~~~~~~l~~~--~-------~~I~sl~~spdg~---~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                       .|..+|+.+++.+..++..  .       .++....+..+|+   .|++++.+|.++++|..++ +++
T Consensus       270 ~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l  337 (668)
T 1kv9_A          270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLI  337 (668)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEE
T ss_pred             eeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC-CEe
Confidence             4999999999999888752  2       2233333444675   6899999999999999988 444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.45  E-value=0.00057  Score=80.82  Aligned_cols=281  Identities=6%  Similarity=-0.034  Sum_probs=174.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec--------CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc-----
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEI--------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR-----  456 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~--------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~-----  456 (707)
                      .+..|+.+ -|.+|+..++........        ...|.++...++|  .|.+++.++.|..|+..........     
T Consensus       275 ~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~  351 (795)
T 4a2l_A          275 RLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNIRNIPYK  351 (795)
T ss_dssp             CEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEECCCTTS
T ss_pred             CEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEEcCCCCC
Confidence            45556665 488999888765433211        4679999999998  6888888888999986544221110     


Q ss_pred             ---cccceeeeccc----ccccCCCCcEEEEecCCccceEEe---------ccCCCeEEEEEcCCCCEEEEEeCCCCccE
Q 005235          457 ---RVKDLLHVETP----TAPDDNMASIVSWLQHDKLDGIRL---------RHFKMVSSVEWHRRGDYLSTVMPAGESRA  520 (707)
Q Consensus       457 ---~~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~~---------~h~~~V~~v~~sp~g~~lat~s~dg~~~~  520 (707)
                         ....+.++...    +..+..++-+..|+..+.......         -....|.+++..++|..|..|+.++   .
T Consensus       352 ~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~---G  428 (795)
T 4a2l_A          352 NSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAG---G  428 (795)
T ss_dssp             SSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTT---E
T ss_pred             CCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcC---c
Confidence               11223333221    455555666777776654332221         1235789999988888555566655   7


Q ss_pred             EEEEECCCCceeeeee-c-----cCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeC------CCCCeEEEEE
Q 005235          521 IFMHQLSKKLSHRIPF-K-----LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLET------GLKEVSSIAI  588 (707)
Q Consensus       521 V~Iwdl~~~~~~~~~~-~-----~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~------~~~~I~sl~~  588 (707)
                      |.+++..++...  .+ .     ....|.++...+++.+.+.+. +.|.+||..+++.......      ....|.++..
T Consensus       429 l~~~d~~~~~~~--~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  505 (795)
T 4a2l_A          429 LSILHRNSGQVE--NFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFR  505 (795)
T ss_dssp             EEEEETTTCCEE--EECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEE
T ss_pred             eeEEeCCCCcEE--EeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEE
Confidence            999998877653  33 1     235788999888887655544 6699999988765432211      2356999999


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCCcceEEee-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCC
Q 005235          589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQN  661 (707)
Q Consensus       589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~  661 (707)
                      .++|...+ |+. +-|..||..+. ..  .+.       .....|.++...++|.+.++.. . -|..|+..      +.
T Consensus       506 d~~g~lWi-gt~-~Gl~~~~~~~~-~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~------~~  572 (795)
T 4a2l_A          506 DSHKRLWI-GGE-EGLSVFKQEGL-DI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEK------DK  572 (795)
T ss_dssp             CTTCCEEE-EES-SCEEEEEEETT-EE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETT------TT
T ss_pred             CCCCCEEE-EeC-CceEEEeCCCC-eE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCC------CC
Confidence            98887555 445 56888998754 32  222       1235799999999998666544 3 47778532      22


Q ss_pred             CcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE
Q 005235          662 PLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA  696 (707)
Q Consensus       662 ~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~  696 (707)
                      .    +..+....+-....|.++...++|.+.+++
T Consensus       573 ~----~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          573 Q----IKRYNTTNGLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             E----EEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             c----EEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence            1    222221111111228888888888765555

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.40  E-value=9e-05  Score=84.36  Aligned_cols=259  Identities=10%  Similarity=0.009  Sum_probs=155.1

Q ss_pred             cEEEEEeC-CCcEEEEeC-CCCeEEEEEecCCc--E----------EEEEEccCCCccEEEEEeCCeEEEEECCCCCchh
Q 005235          389 YLEYKGST-DGTVRIWEV-ESGRCLRVLEIGEA--I----------QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE  454 (707)
Q Consensus       389 ~~l~sgs~-DgtVrIWd~-~tg~~l~~l~~~~~--V----------~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~  454 (707)
                      ..+|.++. ++.|.-+|. .+|+.+..+.....  +          ..++.. ++  .+++++.++.|..+|..++....
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AG--QIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TT--EEEEECTTSEEEEEETTTCCEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE-CC--EEEEEeCCCEEEEEECCCCCEEE
Confidence            46777787 899999999 99999988876221  0          123332 33  57788889999999998886532


Q ss_pred             ccccc------ceeeec----ccccccCC------CCcEEEEecCCccceEEeccCCCe---------------------
Q 005235          455 QRRVK------DLLHVE----TPTAPDDN------MASIVSWLQHDKLDGIRLRHFKMV---------------------  497 (707)
Q Consensus       455 ~~~~~------~v~~~~----~~~~~~~~------d~~i~iW~~~~~~~~~~~~h~~~V---------------------  497 (707)
                      .....      .+.+..    -.+..+..      ++.+..++..++...-........                     
T Consensus       140 ~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~  219 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL  219 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred             EecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccccc
Confidence            21111      111100    00222222      678888888766543211111100                     


Q ss_pred             ------------------EEEEEcCCCCEEEEEeCCC----------C---ccEEEEEECCCCceeeeee--c-cC----
Q 005235          498 ------------------SSVEWHRRGDYLSTVMPAG----------E---SRAIFMHQLSKKLSHRIPF--K-LH----  539 (707)
Q Consensus       498 ------------------~~v~~sp~g~~lat~s~dg----------~---~~~V~Iwdl~~~~~~~~~~--~-~~----  539 (707)
                                        ..+++.+....+..+..+.          .   ...|..+|..+++.. -.+  . +.    
T Consensus       220 g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~-W~~~~~~~d~~d~  298 (571)
T 2ad6_A          220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK-WGYQKTPHDEWDF  298 (571)
T ss_dssp             HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE-EEEESSTTCSSCC
T ss_pred             ccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEE-EEecCCCCccccc
Confidence                              2356666666666655321          0   136999999998876 444  2 11    


Q ss_pred             ---CCeEEEEEeCCCC---EEEEEe-CCeEEEEECCCCeEEEEEeCCC-------------CCe----------------
Q 005235          540 ---GLPVSSVFHPTRS---IFFVST-KKNIRVYDLLKQRLIKKLETGL-------------KEV----------------  583 (707)
Q Consensus       540 ---~~V~~v~fspd~~---~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-------------~~I----------------  583 (707)
                         ....-+....+|+   .+++++ +|.+.++|..+++.+..+....             .++                
T Consensus       299 ~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~  378 (571)
T 2ad6_A          299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI  378 (571)
T ss_dssp             CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEE
T ss_pred             ccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEE
Confidence               1112222334674   456666 7999999999999887765332             111                


Q ss_pred             ----------EEEEEcCCCCEEEEEE-------------------------------------CCCcEEEEECCCCCcce
Q 005235          584 ----------SSIAIHPAGDNLIVGS-------------------------------------REGKLCWFDMDLSSKPY  616 (707)
Q Consensus       584 ----------~sl~~spdg~~L~sGs-------------------------------------~Dg~I~vwDl~~~~~~~  616 (707)
                                ..++++|++.+|++.+                                     .+|.|..||+.++ +..
T Consensus       379 ~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG-~~~  457 (571)
T 2ad6_A          379 CPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG-KAK  457 (571)
T ss_dssp             SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC-CEE
T ss_pred             CCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC-CEE
Confidence                      2467888887877764                                     2478999999887 444


Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          617 RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       617 ~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      -.+... ..+.+..+...+.+++.++.||.|++||..
T Consensus       458 W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          458 WTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             EEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             EEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence            444322 223333333345667778999999999543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.40  E-value=3e-05  Score=78.55  Aligned_cols=182  Identities=8%  Similarity=0.074  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~  574 (707)
                      ...+.|+ ++..+++.+.+|   .|+++|+.+++.. ..+ ...........+.+..|++++  ++.+.+||..+.+.+.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g---~v~~iD~~Tgkv~-~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQG---TLRQLSLESAQPV-WME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTT---EEEECCSSCSSCS-EEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCC---EEEEEECCCCcEE-eEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEE
Confidence            3678887 355666666666   7999999999887 555 333444433334556677766  8999999999999999


Q ss_pred             EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec--CC---CCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005235          575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC--HP---KDITNVAFHRSYPLFASCSDDCTAYV  649 (707)
Q Consensus       575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~--h~---~~I~~vafspdg~llaSgs~Dg~I~V  649 (707)
                      ++...... ..+  .++|..|+++..+++|.++|..+. +....+.-  +.   ..++.+.|. +|.++|..-.+..|.+
T Consensus       131 ti~~~~eG-wGL--t~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v  205 (268)
T 3nok_A          131 TTRYSGEG-WGL--CYWNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLE  205 (268)
T ss_dssp             EEECSSCC-CCE--EEETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred             EEeCCCce-eEE--ecCCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEE
Confidence            99854321 233  357888888888899999999887 55555542  21   245677877 7777777767788999


Q ss_pred             EecccccCCCCCCcccceEEeeCC---------CCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          650 FHGMVYSDLNQNPLIVPLEILRGH---------TSSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       650 wd~~~~~Dl~~~~~~~pl~~l~gh---------~~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                      .      |..++..   +..+.-.         ......-.+.|||+|++..|+.+|.
T Consensus       206 I------Dp~TG~V---~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          206 I------DPATGTV---VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             E------CTTTCBE---EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             E------eCCCCcE---EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            8      5555544   2222211         0000112789999998887776664

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.37  E-value=7e-05  Score=75.79  Aligned_cols=191  Identities=8%  Similarity=0.035  Sum_probs=123.3

Q ss_pred             eEEEEEec--CCcEEEEEEccCCCccEEEEEeCC--eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCC
Q 005235          409 RCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQ--DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHD  484 (707)
Q Consensus       409 ~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~--~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~  484 (707)
                      +.+.++.+  ......|.|+ ++ ..+++++..+  .|+++|+.++....                              
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~------------------------------   79 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQ------------------------------   79 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEE------------------------------
T ss_pred             EEEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEE------------------------------
Confidence            45677777  4556899998 55 3455555555  89999987763210                              


Q ss_pred             ccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEE
Q 005235          485 KLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIR  563 (707)
Q Consensus       485 ~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~  563 (707)
                           ..............+.|+.|..+...  .+.+.++|..+.+.. ..|...+.-.  .+.+++..|+++. .+.|.
T Consensus        80 -----~~~l~~~~FgeGit~~g~~ly~ltw~--~~~v~v~D~~t~~~~-~ti~~~~eG~--glt~dg~~L~~SdGs~~i~  149 (262)
T 3nol_A           80 -----QIELGKRYFGEGISDWKDKIVGLTWK--NGLGFVWNIRNLRQV-RSFNYDGEGW--GLTHNDQYLIMSDGTPVLR  149 (262)
T ss_dssp             -----EEECCTTCCEEEEEEETTEEEEEESS--SSEEEEEETTTCCEE-EEEECSSCCC--CEEECSSCEEECCSSSEEE
T ss_pred             -----EEecCCccceeEEEEeCCEEEEEEee--CCEEEEEECccCcEE-EEEECCCCce--EEecCCCEEEEECCCCeEE
Confidence                 01111222222222345555555432  249999999999887 7773332222  3345677777766 78899


Q ss_pred             EEECCCCeEEEEEeCCC-----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC------------CCCE
Q 005235          564 VYDLLKQRLIKKLETGL-----KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH------------PKDI  626 (707)
Q Consensus       564 iwDl~~~~~~~~l~~~~-----~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h------------~~~I  626 (707)
                      ++|..+.+.+.++....     ..++.+.|. +|...+..-.++.|.+.|..++ +....+...            ....
T Consensus       150 ~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vl  227 (262)
T 3nol_A          150 FLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVL  227 (262)
T ss_dssp             EECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred             EEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCce
Confidence            99999998888876532     335667876 6755544446788999999987 666666532            1356


Q ss_pred             EEEEEcCCCCEEEEEeC
Q 005235          627 TNVAFHRSYPLFASCSD  643 (707)
Q Consensus       627 ~~vafspdg~llaSgs~  643 (707)
                      +.+||+|++..|...+.
T Consensus       228 NGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          228 NGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             EEEEEcCCCCEEEEECC
Confidence            89999998876665553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.33  E-value=8.2e-05  Score=86.37  Aligned_cols=252  Identities=11%  Similarity=0.007  Sum_probs=143.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCC-----cEEE-EEEccCCCccEEEEEe------CCeEEEEECCCCCchhc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGE-----AIQY-VAWNPLPELPVLAVSV------GQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~-----~V~~-v~~spdg~~~lla~s~------d~~V~lwd~~~~~~~~~  455 (707)
                      ...+|.++.|+.|..+|..||+.+..+....     .+.+ ..+ .++  .+++++.      ++.|..+|..++...-.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG--KVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC--EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            4578889999999999999999998877621     1111 111 144  4555543      47899999888754221


Q ss_pred             cccccee-eeccc---ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC--------------
Q 005235          456 RRVKDLL-HVETP---TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE--------------  517 (707)
Q Consensus       456 ~~~~~v~-~~~~~---~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~--------------  517 (707)
                      .....-. ...+.   +..+     ...|.-  ........+......+++.+.+..++.++.++.              
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~-----~~~~~g--~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~  266 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREA-----AKTWQG--DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDN  266 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHH-----HTTCCS--SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred             ecccCCCCCccccccccccc-----cccCCc--cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCc
Confidence            1100000 00000   0000     000000  000000011222345788888888877776541              


Q ss_pred             --ccEEEEEECCCCceeeeee--c-cC-------CCeEEEEEeCCCC---EEEEEe-CCeEEEEECCCCeEEEEEeCCC-
Q 005235          518 --SRAIFMHQLSKKLSHRIPF--K-LH-------GLPVSSVFHPTRS---IFFVST-KKNIRVYDLLKQRLIKKLETGL-  580 (707)
Q Consensus       518 --~~~V~Iwdl~~~~~~~~~~--~-~~-------~~V~~v~fspd~~---~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-  580 (707)
                        ...|..+|..+++.. -.+  . +.       .++....+..++.   .+++++ +|.++++|..+|+++....... 
T Consensus       267 l~~~~v~AlD~~tG~~~-W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~  345 (668)
T 1kv9_A          267 LYLSSILAIRPDTGKLA-WHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKV  345 (668)
T ss_dssp             TTTTEEEEECTTTCCEE-EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred             eeeeeEEEEcCCCCcee-eEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccc
Confidence              125899999998876 555  2 21       2233333334564   566666 8999999999999885543221 


Q ss_pred             CCe-----------------------------------EEEEEcCCCCEEEEEE--------------------------
Q 005235          581 KEV-----------------------------------SSIAIHPAGDNLIVGS--------------------------  599 (707)
Q Consensus       581 ~~I-----------------------------------~sl~~spdg~~L~sGs--------------------------  599 (707)
                      .+.                                   ..++++|+...+++..                          
T Consensus       346 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~  425 (668)
T 1kv9_A          346 TWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGF  425 (668)
T ss_dssp             CSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCG
T ss_pred             ccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccc
Confidence            010                                   1267788777666522                          


Q ss_pred             ----------CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          600 ----------REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       600 ----------~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                                .+|.|..||+.++ +.+-....+ ..+....+...+.+++.++.||.|++||.
T Consensus       426 ~~~~~~p~~~~~g~l~A~D~~tG-~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~  486 (668)
T 1kv9_A          426 ADATDVPAAVVSGALLAWDPVKQ-KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSA  486 (668)
T ss_dssp             GGCCCCCGGGCEEEEEEEETTTT-EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cccCCCCCCCccceEEEEeCCCC-cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhh
Confidence                      2378999999988 444444432 23333445556788888999999999954

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.28  E-value=0.0013  Score=77.62  Aligned_cols=292  Identities=10%  Similarity=0.033  Sum_probs=169.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEe--------cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc----
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLE--------IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR----  457 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~--------~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~----  457 (707)
                      .+..|+.. -|.+||..+++......        ....|.++...++|  .|.+++..+.|.+++..+........    
T Consensus       223 ~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~  299 (781)
T 3v9f_A          223 NIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN--KLWIATELNGIMILDLQQNQFLLPEQIRFE  299 (781)
T ss_dssp             CEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTS--EEEEEESSSCEEEEETTCC---------CE
T ss_pred             CEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC--CEEEEeCCCCeEEECCCCCeeeeeeccccc
Confidence            35555555 58899988776543211        14679999998888  57777776778899987654221111    


Q ss_pred             ------------ccceeeeccc----ccccCCCCcEEEEecCCccceEEe----------ccCCCeEEEEEcCCCCEEEE
Q 005235          458 ------------VKDLLHVETP----TAPDDNMASIVSWLQHDKLDGIRL----------RHFKMVSSVEWHRRGDYLST  511 (707)
Q Consensus       458 ------------~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~~----------~h~~~V~~v~~sp~g~~lat  511 (707)
                                  ...+.++..-    +..+..++-+..++..........          -....|.++...++|...+ 
T Consensus       300 ~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-  378 (781)
T 3v9f_A          300 FIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWI-  378 (781)
T ss_dssp             EECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEE-
T ss_pred             cccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEE-
Confidence                        1122222111    344444555666665543322211          0235688999888887554 


Q ss_pred             EeCCCCccEEEEEECCCCceeeeee-----ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeC---CCCCe
Q 005235          512 VMPAGESRAIFMHQLSKKLSHRIPF-----KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLET---GLKEV  583 (707)
Q Consensus       512 ~s~dg~~~~V~Iwdl~~~~~~~~~~-----~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~---~~~~I  583 (707)
                      |+.++   .|.+++..++...  .+     .....|.+++..+++.+.+...++.|..||..+++.. .+..   ....|
T Consensus       379 gt~~~---Gl~~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v  452 (781)
T 3v9f_A          379 GTDGG---GINVFENGKRVAI--YNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDV  452 (781)
T ss_dssp             EEBSS---CEEEEETTEEEEE--CC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCE
T ss_pred             EeCCC---cEEEEECCCCeEE--EccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeE
Confidence            44333   5888887654332  11     1235688998888887555433678999998877643 3321   34579


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCC
Q 005235          584 SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-----PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDL  658 (707)
Q Consensus       584 ~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-----~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl  658 (707)
                      .++...++|. |.+|+. +-|..||..++ .........     ...|.++...++|.+.+.....| |..|+.      
T Consensus       453 ~~i~~d~~g~-lwigt~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~------  522 (781)
T 3v9f_A          453 RVFYEDKNKK-IWIGTH-AGVFVIDLASK-KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTP------  522 (781)
T ss_dssp             EEEEECTTSE-EEEEET-TEEEEEESSSS-SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECT------
T ss_pred             EEEEECCCCC-EEEEEC-CceEEEeCCCC-eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeC------
Confidence            9999988775 555666 56899998765 222222111     35799999999998766544345 667743      


Q ss_pred             CCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .+..    +..+..........|.++...++|.+.++.. .|.|..|+
T Consensus       523 ~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          523 DMQL----VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             TCCE----EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred             CCCe----EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence            2221    2222211111112388999988888555443 55535443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.24  E-value=0.0013  Score=77.67  Aligned_cols=288  Identities=10%  Similarity=0.030  Sum_probs=170.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEe-------c--------CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLE-------I--------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE  453 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~-------~--------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~  453 (707)
                      ..+..|+..+-|.+++..++.......       .        ...|.++...++|  .|.+++.++-|..++.......
T Consensus       269 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~  346 (781)
T 3v9f_A          269 NKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFH  346 (781)
T ss_dssp             SEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCE
T ss_pred             CCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcce
Confidence            456667775568889988776443222       1        4679999999988  6888888888999987755321


Q ss_pred             hcc-----------cccceeeeccc----ccccCCCCcEEEEecCCccceEE----eccCCCeEEEEEcCCCCEEEEEeC
Q 005235          454 EQR-----------RVKDLLHVETP----TAPDDNMASIVSWLQHDKLDGIR----LRHFKMVSSVEWHRRGDYLSTVMP  514 (707)
Q Consensus       454 ~~~-----------~~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~----~~h~~~V~~v~~sp~g~~lat~s~  514 (707)
                      ...           ....+.++...    +..++..+-+..++..+......    ......|.++...++|...+ |+.
T Consensus       347 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~  425 (781)
T 3v9f_A          347 TWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY  425 (781)
T ss_dssp             EEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EET
T ss_pred             eeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec
Confidence            111           11222222211    33444344566666553322111    12245688998888887655 454


Q ss_pred             CCCccEEEEEECCCCceeeeeec----cCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCC-----CCCeEE
Q 005235          515 AGESRAIFMHQLSKKLSHRIPFK----LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETG-----LKEVSS  585 (707)
Q Consensus       515 dg~~~~V~Iwdl~~~~~~~~~~~----~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~-----~~~I~s  585 (707)
                      ++   .|..++..++...  .+.    ....|.++...+++.+ .+|+.+.|.+||..+++........     ...|.+
T Consensus       426 ~~---Gl~~~~~~~~~~~--~~~~~~~~~~~v~~i~~d~~g~l-wigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (781)
T 3v9f_A          426 LG---NISYYNTRLKKFQ--IIELEKNELLDVRVFYEDKNKKI-WIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRS  499 (781)
T ss_dssp             TE---EEEEECSSSCEEE--ECCSTTTCCCCEEEEEECTTSEE-EEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred             cC---CEEEEcCCCCcEE--EeccCCCCCCeEEEEEECCCCCE-EEEECCceEEEeCCCCeEEecccCcccccccceeEE
Confidence            44   7888888766543  331    3467889988887764 4455577999998876544332222     356999


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCC
Q 005235          586 IAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC----HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQN  661 (707)
Q Consensus       586 l~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~----h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~  661 (707)
                      +...++|.+. +|+..+-|..||..+.  .+..+..    ....|.++...++|.+.++.. .|.|..|+.      .+.
T Consensus       500 i~~d~~g~lW-igt~~~Gl~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~------~~~  569 (781)
T 3v9f_A          500 IAQDSEGRFW-IGTFGGGVGIYTPDMQ--LVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSA------RNF  569 (781)
T ss_dssp             EEECTTCCEE-EEESSSCEEEECTTCC--EEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCT------TTC
T ss_pred             EEEcCCCCEE-EEEcCCCEEEEeCCCC--eEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECC------CCC
Confidence            9999888654 4565445888888654  2333431    135689999999998666544 665477743      222


Q ss_pred             CcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          662 PLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       662 ~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                      .    +..+....+-....|.++...++|.+.+++ ..|
T Consensus       570 ~----~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G  603 (781)
T 3v9f_A          570 D----YQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG  603 (781)
T ss_dssp             C----CEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC
T ss_pred             c----EEEccccCCCCCceEEEEEECCCCCEEEEc-CCc
Confidence            2    222221111111127788888888755543 445

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.24  E-value=0.0017  Score=68.89  Aligned_cols=214  Identities=12%  Similarity=-0.006  Sum_probs=135.1

Q ss_pred             CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCC
Q 005235          397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA  475 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~  475 (707)
                      ...|+..++........+.....+.+|+|.+... .|+.+. ..+.|..+++....                        
T Consensus        52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~-~ly~~D~~~~~I~r~~~~g~~------------------------  106 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRE-LVFWSDVTLDRILRANLNGSN------------------------  106 (349)
T ss_dssp             BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCS------------------------
T ss_pred             ccceEEEeCCCCeeEEeecCCCceEEEEEecccc-EEEEEeccCCceEEEecCCCC------------------------
Confidence            3458888887666555555566789999997663 455444 45667777654331                        


Q ss_pred             cEEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235          476 SIVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI  553 (707)
Q Consensus       476 ~i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~  553 (707)
                                 ... ..........+++.+.+..|..+...  .+.|.+.++...... ..+ ........++++|.+..
T Consensus       107 -----------~~~~~~~~~~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~  172 (349)
T 3v64_C          107 -----------VEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGT  172 (349)
T ss_dssp             -----------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTE
T ss_pred             -----------ceEEEeCCCCCccEEEEecCCCeEEEEcCC--CCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCe
Confidence                       111 11122345788888765555444432  238999998766543 333 44467889999998777


Q ss_pred             EEEEe--C-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEeecCCCCEEEE
Q 005235          554 FFVST--K-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVLKCHPKDITNV  629 (707)
Q Consensus       554 l~v~s--d-g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~v  629 (707)
                      |+.+.  . +.|..+++........+.........|+|+|++..|..+. ..++|..+|++.. .....+........++
T Consensus       173 ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gi  251 (349)
T 3v64_C          173 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAI  251 (349)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEE
T ss_pred             EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEE
Confidence            77765  4 7899999875432222233445689999998777666554 4678999998743 3233333334456778


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEe
Q 005235          630 AFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       630 afspdg~llaSgs~Dg~I~Vwd  651 (707)
                      ++ ..+.++++-...+.|..++
T Consensus       252 av-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          252 TV-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             EE-ETTEEEEEETTTTEEEEEE
T ss_pred             EE-ECCEEEEecCCCCeEEEEE
Confidence            88 3556666666677787775

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.22  E-value=0.0011  Score=71.52  Aligned_cols=216  Identities=12%  Similarity=0.005  Sum_probs=137.5

Q ss_pred             CCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235          396 TDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM  474 (707)
Q Consensus       396 ~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d  474 (707)
                      ....|+..++..+.....+.....+.+|+|.+.+. .|+.+. ..+.|..+++.....                      
T Consensus        94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~-~ly~~D~~~~~I~r~~~~g~~~----------------------  150 (386)
T 3v65_B           94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRE-LVFWSDVTLDRILRANLNGSNV----------------------  150 (386)
T ss_dssp             CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCCE----------------------
T ss_pred             cCccceeeccCCCcEEEEecCCCccEEEEEecCCC-eEEEEeCCCCcEEEEecCCCCc----------------------
Confidence            33568888988766655555567789999998663 454443 456677776543211                      


Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI  553 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~  553 (707)
                         ..         ...........+++.+.+..|..+...  .+.|.+.++...... ..+ ........++++|.+..
T Consensus       151 ---~~---------~~~~~~~~p~glavd~~~g~lY~~d~~--~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~  215 (386)
T 3v65_B          151 ---EE---------VVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGT  215 (386)
T ss_dssp             ---EE---------EECSSCSCCCCEEEETTTTEEEEEETT--TTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTE
T ss_pred             ---EE---------EEeCCCCCccEEEEEeCCCeEEEEcCC--CCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCe
Confidence               00         111122345678888766555544432  238888888765443 333 44467899999998887


Q ss_pred             EEEEe--C-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcceEEeecCCCCEEEE
Q 005235          554 FFVST--K-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPYRVLKCHPKDITNV  629 (707)
Q Consensus       554 l~v~s--d-g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~v  629 (707)
                      |+.+.  . +.|..+++........+.....+...|+|+|++..|..+ +..+.|..+|++.. .....+........++
T Consensus       216 ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~gi  294 (386)
T 3v65_B          216 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAI  294 (386)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEE
T ss_pred             EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEE
Confidence            77765  4 789999987543333333445668999999877666655 45677999998743 3333333334456788


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEe
Q 005235          630 AFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       630 afspdg~llaSgs~Dg~I~Vwd  651 (707)
                      ++ ..+.++++-...+.|..++
T Consensus       295 av-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          295 TV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EE-ETTEEEEEETTTTEEEEEE
T ss_pred             EE-ECCEEEEeeCCCCeEEEEE
Confidence            88 4556666766778888885

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.22  E-value=0.0016  Score=74.06  Aligned_cols=287  Identities=9%  Similarity=-0.053  Sum_probs=161.5

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcE----------EEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc-
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAI----------QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR-  457 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V----------~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~-  457 (707)
                      ..+|.++.++.|.-+|..||+.+..+......          ..++.. ++  .+++++.++.|..+|..++....... 
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~-~~--~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY-GD--KVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE-TT--EEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE-CC--EEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            46666666445999999999999888762211          222332 33  58888889999999998886532111 


Q ss_pred             ----------ccceeeecc-----cccccC------CCCcEEEEecCCccceEEeccCC---------------------
Q 005235          458 ----------VKDLLHVET-----PTAPDD------NMASIVSWLQHDKLDGIRLRHFK---------------------  495 (707)
Q Consensus       458 ----------~~~v~~~~~-----~~~~~~------~d~~i~iW~~~~~~~~~~~~h~~---------------------  495 (707)
                                ...++.-.-     .+..+.      .++.+..++..++...-......                     
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~  225 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence                      111111110     111221      25677777766554322111100                     


Q ss_pred             ---------------------CeEEEEEcCCCCEEEEEeCC------------C---------CccEEEEEECCCCceee
Q 005235          496 ---------------------MVSSVEWHRRGDYLSTVMPA------------G---------ESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       496 ---------------------~V~~v~~sp~g~~lat~s~d------------g---------~~~~V~Iwdl~~~~~~~  533 (707)
                                           .-..+++.+....++.+..+            +         ....|..+|..+++.. 
T Consensus       226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~-  304 (582)
T 1flg_A          226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK-  304 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE-
T ss_pred             CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE-
Confidence                                 00134666777777766632            1         0148999999999877 


Q ss_pred             eee--c-cCC-------CeEEEEEe-CCCC---EEEEEe-CCeEEEEECCCCeEEEEEeCCC--CCe-------------
Q 005235          534 IPF--K-LHG-------LPVSSVFH-PTRS---IFFVST-KKNIRVYDLLKQRLIKKLETGL--KEV-------------  583 (707)
Q Consensus       534 ~~~--~-~~~-------~V~~v~fs-pd~~---~l~v~s-dg~I~iwDl~~~~~~~~l~~~~--~~I-------------  583 (707)
                      -.+  . +..       ...-+... .+|+   .+++++ +|.++++|..+++++..+....  .+.             
T Consensus       305 W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~  384 (582)
T 1flg_A          305 WFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVER  384 (582)
T ss_dssp             EEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEEC
T ss_pred             EEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEc
Confidence            555  2 211       11112222 4664   666777 8999999999999887765432  111             


Q ss_pred             ------------------------------EEEEEcCCCCEEEEEE---------------------------------C
Q 005235          584 ------------------------------SSIAIHPAGDNLIVGS---------------------------------R  600 (707)
Q Consensus       584 ------------------------------~sl~~spdg~~L~sGs---------------------------------~  600 (707)
                                                    ..++++|+...+++..                                 .
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~  464 (582)
T 1flg_A          385 EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDH  464 (582)
T ss_dssp             TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSC
T ss_pred             cccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCC
Confidence                                          1346666655555543                                 2


Q ss_pred             CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235          601 EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG  680 (707)
Q Consensus       601 Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g  680 (707)
                      +|.|.-||+.++. .+-....+. .+..-.....+.+++.|+.||.++.||.      .++..   +-.++.....   .
T Consensus       465 ~G~l~A~D~~tG~-~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~------~tG~~---lW~~~~~~g~---~  530 (582)
T 1flg_A          465 VGSLRAMDPVSGK-VVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDA------KSGKE---LWKFQTGSGI---V  530 (582)
T ss_dssp             SEEEEEECTTTCC-EEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEET------TTCCE---EEEEECSSCC---C
T ss_pred             cceEEEEECCCCC-EEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEEC------CCCCE---EEEecCCCCc---c
Confidence            5789999998884 333333221 2222122224667778999999999954      44444   4444433321   0


Q ss_pred             eeEEEEcCCCCEE
Q 005235          681 VMDCKFHPRQPWL  693 (707)
Q Consensus       681 V~~l~fspdg~~L  693 (707)
                      ..-+.|..+|+..
T Consensus       531 a~P~~y~~~G~qY  543 (582)
T 1flg_A          531 SPPITWEQDGEQY  543 (582)
T ss_dssp             SCCEEEEETTEEE
T ss_pred             cCceEEEECCEEE
Confidence            1226676777743

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.21  E-value=0.00084  Score=69.56  Aligned_cols=213  Identities=10%  Similarity=0.021  Sum_probs=125.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC-C--eEEEEECCCCCchhcccccceeee
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG-Q--DVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d-~--~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      +.++++....+.|..|+... .....+.....+.+|++.++|  .++++... +  .|..++..++...           
T Consensus        43 g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG--~l~vad~~~~~~~v~~~d~~~g~~~-----------  108 (306)
T 2p4o_A           43 GTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNG--DLVATGWNADSIPVVSLVKSDGTVE-----------  108 (306)
T ss_dssp             SCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTS--CEEEEEECTTSCEEEEEECTTSCEE-----------
T ss_pred             CCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCC--cEEEEeccCCcceEEEEcCCCCeEE-----------
Confidence            34666666788999999764 455555567789999999999  36655533 2  3666665443211           


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee--------e
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP--------F  536 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~--------~  536 (707)
                                   .+...         ........++..+.+..+++-...+   .|.++|...+......        .
T Consensus       109 -------------~~~~~---------~~~~~~~g~~~~~~~~~~v~d~~~g---~i~~~d~~~~~~~v~~~~~~~~~~~  163 (306)
T 2p4o_A          109 -------------TLLTL---------PDAIFLNGITPLSDTQYLTADSYRG---AIWLIDVVQPSGSIWLEHPMLARSN  163 (306)
T ss_dssp             -------------EEEEC---------TTCSCEEEEEESSSSEEEEEETTTT---EEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             -------------EEEeC---------CCccccCcccccCCCcEEEEECCCC---eEEEEeCCCCcEeEEEECCcccccc
Confidence                         01111         1111223444444444444433445   8888887654221010        0


Q ss_pred             --ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC-CeE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235          537 --KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK-QRL--IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM  609 (707)
Q Consensus       537 --~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~-~~~--~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl  609 (707)
                        ..-.....+  +|++..|+++.  .+.|.+|++.. ++.  ...+... .....|+++++|.++++....+.|.+||.
T Consensus       164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence              111234455  88888888876  68999999874 321  1122111 34567899999988777777889999997


Q ss_pred             CCCCcceE--EeecCCCCEEEEEEc---CCCCEEEEEeCC
Q 005235          610 DLSSKPYR--VLKCHPKDITNVAFH---RSYPLFASCSDD  644 (707)
Q Consensus       610 ~~~~~~~~--~l~~h~~~I~~vafs---pdg~llaSgs~D  644 (707)
                      . + +...  .+.......++++|.   |++..|+.++..
T Consensus       241 ~-G-~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          241 D-R-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             T-C-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             C-C-CEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            5 3 3322  223233568999998   887765555443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.21  E-value=0.00013  Score=73.79  Aligned_cols=185  Identities=9%  Similarity=0.011  Sum_probs=121.2

Q ss_pred             eEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc
Q 005235          409 RCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL  486 (707)
Q Consensus       409 ~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~  486 (707)
                      +.+.++.+  ......|.|+. + ..+++.+.++.|+++|+.++....                                
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~--------------------------------   89 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVW--------------------------------   89 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSE--------------------------------
T ss_pred             EEEEEEcCCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEe--------------------------------
Confidence            56677776  45568999984 3 345555566789999988764321                                


Q ss_pred             ceEEeccCCCe--EEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235          487 DGIRLRHFKMV--SSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNI  562 (707)
Q Consensus       487 ~~~~~~h~~~V--~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I  562 (707)
                        ..  .....  ..+++  .|+.|..+. .++   .+.++|..+.+.. ..|...+.-..++  +++..|+++. ++.|
T Consensus        90 --~~--l~~~~FgeGit~--~g~~Ly~ltw~~~---~v~V~D~~Tl~~~-~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l  157 (268)
T 3nok_A           90 --ME--RLGNIFAEGLAS--DGERLYQLTWTEG---LLFTWSGMPPQRE-RTTRYSGEGWGLC--YWNGKLVRSDGGTML  157 (268)
T ss_dssp             --EE--ECTTCCEEEEEE--CSSCEEEEESSSC---EEEEEETTTTEEE-EEEECSSCCCCEE--EETTEEEEECSSSEE
T ss_pred             --EE--CCCCcceeEEEE--eCCEEEEEEccCC---EEEEEECCcCcEE-EEEeCCCceeEEe--cCCCEEEEECCCCEE
Confidence              01  11122  22444  344444443 344   9999999999887 7773333323444  5678888877 7999


Q ss_pred             EEEECCCCeEEEEEeCCC-----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-------------CC
Q 005235          563 RVYDLLKQRLIKKLETGL-----KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-------------PK  624 (707)
Q Consensus       563 ~iwDl~~~~~~~~l~~~~-----~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-------------~~  624 (707)
                      .++|..+.+.+.++....     ..++.|.|. +|...+..-.+..|.+.|..++ +.+..+...             ..
T Consensus       158 ~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~  235 (268)
T 3nok_A          158 TFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEA  235 (268)
T ss_dssp             EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTC
T ss_pred             EEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCC
Confidence            999999999888877532     245777877 6754444445788999999987 666666532             13


Q ss_pred             CEEEEEEcCCCC-EEEEE
Q 005235          625 DITNVAFHRSYP-LFASC  641 (707)
Q Consensus       625 ~I~~vafspdg~-llaSg  641 (707)
                      ..+.|||+|++. +|++|
T Consensus       236 vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          236 VLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CEEEEEECTTTCCEEEEE
T ss_pred             ceEEEEEcCCCCEEEEeC
Confidence            578999999766 55554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.20  E-value=0.00079  Score=76.85  Aligned_cols=261  Identities=9%  Similarity=-0.026  Sum_probs=154.7

Q ss_pred             cEEEEEeC-CCcEEEEeC-CCCeEEEEEecCCc------------EEEEEEccCCCcc----EEEEEeCCeEEEEECCCC
Q 005235          389 YLEYKGST-DGTVRIWEV-ESGRCLRVLEIGEA------------IQYVAWNPLPELP----VLAVSVGQDVLILNTGLG  450 (707)
Q Consensus       389 ~~l~sgs~-DgtVrIWd~-~tg~~l~~l~~~~~------------V~~v~~spdg~~~----lla~s~d~~V~lwd~~~~  450 (707)
                      ..+|.++. ++.|.-+|. .+|+.+..+.....            ...++++|.+. .    +++++.++.|..+|..++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g-~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDG-KTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCS-SSCCEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCC-cceeEEEEEcCCCEEEEEECCCC
Confidence            46777787 899999999 99999988876221            12355644332 4    888888999999999888


Q ss_pred             Cchhccccc------ceeeec----ccccccC------CCCcEEEEecCCccceEEeccCCCe-----------------
Q 005235          451 NEEEQRRVK------DLLHVE----TPTAPDD------NMASIVSWLQHDKLDGIRLRHFKMV-----------------  497 (707)
Q Consensus       451 ~~~~~~~~~------~v~~~~----~~~~~~~------~d~~i~iW~~~~~~~~~~~~h~~~V-----------------  497 (707)
                      .........      .+.+..    -.+..+.      .++.+..++..++...-........                 
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g  221 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence            653221111      111100    0022222      3688888888766553211111110                 


Q ss_pred             ----------------------EEEEEcCCCCEEEEEeCCCC-------------ccEEEEEECCCCceeeeee--ccC-
Q 005235          498 ----------------------SSVEWHRRGDYLSTVMPAGE-------------SRAIFMHQLSKKLSHRIPF--KLH-  539 (707)
Q Consensus       498 ----------------------~~v~~sp~g~~lat~s~dg~-------------~~~V~Iwdl~~~~~~~~~~--~~~-  539 (707)
                                            ..+++.+....++.++.++.             ...|..+|..+++.. -.+  .+. 
T Consensus       222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~-W~~q~~~~d  300 (599)
T 1w6s_A          222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK-FGYQKTPHD  300 (599)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE-EEEESSTTC
T ss_pred             ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee-eEeecCCCc
Confidence                                  13456667777776665420             137999999998876 555  211 


Q ss_pred             C-------CeEEEEEe-CCC---CEEEEEe-CCeEEEEECCCCeEEEEEeCCC-------------CCe-----------
Q 005235          540 G-------LPVSSVFH-PTR---SIFFVST-KKNIRVYDLLKQRLIKKLETGL-------------KEV-----------  583 (707)
Q Consensus       540 ~-------~V~~v~fs-pd~---~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~-------------~~I-----------  583 (707)
                      .       ...-+... .+|   +.++.++ +|.+.++|..+++++.......             .++           
T Consensus       301 ~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~  380 (599)
T 1w6s_A          301 EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDH  380 (599)
T ss_dssp             SSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTC
T ss_pred             cccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCC
Confidence            1       11112222 567   4566666 8999999999999887765321             111           


Q ss_pred             ---------------EEEEEcCCCCEEEEEE---------------------------------------CCCcEEEEEC
Q 005235          584 ---------------SSIAIHPAGDNLIVGS---------------------------------------REGKLCWFDM  609 (707)
Q Consensus       584 ---------------~sl~~spdg~~L~sGs---------------------------------------~Dg~I~vwDl  609 (707)
                                     ..++++|+..+|++..                                       ..|.|.-||+
T Consensus       381 ~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~  460 (599)
T 1w6s_A          381 LAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNA  460 (599)
T ss_dssp             CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECT
T ss_pred             CccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEEC
Confidence                           2456777766665532                                       3467888888


Q ss_pred             CCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          610 DLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       610 ~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .++. .+-.... ..++.+-.+...+.+++.++.||.++.||..
T Consensus       461 ~tG~-~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~  502 (599)
T 1w6s_A          461 ITGD-YKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSD  502 (599)
T ss_dssp             TTCC-EEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCC-EEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECC
Confidence            8874 3333321 1112211122346677779999999999543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.17  E-value=0.00059  Score=68.32  Aligned_cols=189  Identities=11%  Similarity=0.041  Sum_probs=121.0

Q ss_pred             eEEEEEec--CCcEEEEEEccCCCccEEEEE-eC--CeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecC
Q 005235          409 RCLRVLEI--GEAIQYVAWNPLPELPVLAVS-VG--QDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQH  483 (707)
Q Consensus       409 ~~l~~l~~--~~~V~~v~~spdg~~~lla~s-~d--~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~  483 (707)
                      +.+.++.+  ......+.|++ +  .|+.++ ..  +.|+.+|+.++...                              
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~--~LyestG~~g~S~v~~vD~~tgkv~------------------------------   56 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-G--HLYESTGETGRSSVRKVDLETGRIL------------------------------   56 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-T--EEEEEECCTTSCEEEEEETTTCCEE------------------------------
T ss_pred             EEEEEcCCCCccccccEEEEC-C--EEEEECCCCCCceEEEEECCCCCEE------------------------------
Confidence            56677777  56788999987 4  355444 43  48999998876331                              


Q ss_pred             CccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235          484 DKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNI  562 (707)
Q Consensus       484 ~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I  562 (707)
                           .................++.|......  .+.+.++|..+.+.. ..|...+.-..++  +++..|+++. ++.|
T Consensus        57 -----~~~~l~~~~fgeGi~~~~~~ly~ltw~--~~~v~v~D~~tl~~~-~ti~~~~~Gwglt--~dg~~L~vSdgs~~l  126 (243)
T 3mbr_X           57 -----QRAEVPPPYFGAGIVAWRDRLIQLTWR--NHEGFVYDLATLTPR-ARFRYPGEGWALT--SDDSHLYMSDGTAVI  126 (243)
T ss_dssp             -----EEEECCTTCCEEEEEEETTEEEEEESS--SSEEEEEETTTTEEE-EEEECSSCCCEEE--ECSSCEEEECSSSEE
T ss_pred             -----EEEeCCCCcceeEEEEeCCEEEEEEee--CCEEEEEECCcCcEE-EEEeCCCCceEEe--eCCCEEEEECCCCeE
Confidence                 011111222222222234555544432  249999999999887 7773333333444  5677777776 7899


Q ss_pred             EEEECCCCeEEEEEeCCC-----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-------------CC
Q 005235          563 RVYDLLKQRLIKKLETGL-----KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-------------PK  624 (707)
Q Consensus       563 ~iwDl~~~~~~~~l~~~~-----~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-------------~~  624 (707)
                      .++|..+.+.+.++....     ..++.|.+. +|..++..-.+..|.+.|..++ +.+..+...             ..
T Consensus       127 ~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~  204 (243)
T 3mbr_X          127 RKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTND  204 (243)
T ss_dssp             EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSS
T ss_pred             EEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCC
Confidence            999999998888887532     346677776 6655544446778999999987 666665521             13


Q ss_pred             CEEEEEEcCCCCEEEEEe
Q 005235          625 DITNVAFHRSYPLFASCS  642 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs  642 (707)
                      ..+.|||+|++..|...+
T Consensus       205 vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          205 VLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEC
Confidence            578999999877555544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.17  E-value=0.00019  Score=81.73  Aligned_cols=244  Identities=10%  Similarity=0.008  Sum_probs=143.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCC-----cEEE-EEEccCCCccEEEEEe------CCeEEEEECCCCCchhc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGE-----AIQY-VAWNPLPELPVLAVSV------GQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~-----~V~~-v~~spdg~~~lla~s~------d~~V~lwd~~~~~~~~~  455 (707)
                      ...+|.++.|+.|..+|..+|+.+..+....     .+.+ .... ++  .+++++.      ++.|..+|..++...-.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD--TVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT--EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC--EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            4578888999999999999999998877532     2221 1111 44  4666655      68999999998865221


Q ss_pred             ccccc-e---------------------------------------eeecc----c-ccccCC----------------C
Q 005235          456 RRVKD-L---------------------------------------LHVET----P-TAPDDN----------------M  474 (707)
Q Consensus       456 ~~~~~-v---------------------------------------~~~~~----~-~~~~~~----------------d  474 (707)
                      ..... .                                       ....+    . +..+..                .
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~  271 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence            11000 0                                       00000    0 111111                1


Q ss_pred             CcEEEEecCCccceEEe---ccC-------CCeEEEEEcCCCC---EEEEEeCCCCccEEEEEECCCCceeeeee--cc-
Q 005235          475 ASIVSWLQHDKLDGIRL---RHF-------KMVSSVEWHRRGD---YLSTVMPAGESRAIFMHQLSKKLSHRIPF--KL-  538 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~---~h~-------~~V~~v~~sp~g~---~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~-  538 (707)
                      +.+..++..++...-..   .|.       ....-+....+|+   .++.++.+|   .+.+.|..+++.. ..+  .. 
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~~-w~~~~~~~  347 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNG---ILYTLNRENGNLI-VAEKVDPA  347 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTS---EEEEEETTTCCEE-EEEESSTT
T ss_pred             EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCc---EEEEEECCCCCEE-eeecccCC
Confidence            24777777665543221   111       1111122234674   566777777   9999999888765 333  11 


Q ss_pred             C-----------CCe--------------------------EEEEEeCCCCEEEEEe-----------------------
Q 005235          539 H-----------GLP--------------------------VSSVFHPTRSIFFVST-----------------------  558 (707)
Q Consensus       539 ~-----------~~V--------------------------~~v~fspd~~~l~v~s-----------------------  558 (707)
                      .           .++                          ..++|+|+..+|++.+                       
T Consensus       348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  427 (571)
T 2ad6_A          348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence            0           011                          2467888887777653                       


Q ss_pred             ---------------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC
Q 005235          559 ---------------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP  623 (707)
Q Consensus       559 ---------------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~  623 (707)
                                     ++.|..||+.+++.+.++.... .+.+..+...+..+++|+.||.|+.||..++ +.+..+....
T Consensus       428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~  505 (571)
T 2ad6_A          428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDG-KELWNFKMPS  505 (571)
T ss_dssp             EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred             cceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCC-CEEEEEeCCC
Confidence                           3689999999999888876442 2222222334678888999999999999988 5565565332


Q ss_pred             C-CEEEEEEcCCCCEEEE
Q 005235          624 K-DITNVAFHRSYPLFAS  640 (707)
Q Consensus       624 ~-~I~~vafspdg~llaS  640 (707)
                      . .-..+.|..+|.+++.
T Consensus       506 ~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          506 GGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             CCCSCCEEEEETTEEEEE
T ss_pred             CcEeeeEEEEECCEEEEE
Confidence            2 1122445567774443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.14  E-value=0.0017  Score=69.93  Aligned_cols=197  Identities=10%  Similarity=0.003  Sum_probs=121.4

Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL  568 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~  568 (707)
                      .....+..++|++.+..|..+...  .+.|..+++...... ..+ ........+++.+.+..|+.+.  .+.|.++++.
T Consensus       113 ~~~~~~~gl~~d~~~~~ly~~D~~--~~~I~r~~~~g~~~~-~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d  189 (386)
T 3v65_B          113 NNLENAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVE-EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD  189 (386)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCCEE-EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT
T ss_pred             cCCCccEEEEEecCCCeEEEEeCC--CCcEEEEecCCCCcE-EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC
Confidence            344568899999877666655543  248999999876544 333 3344567899998777776665  5889999987


Q ss_pred             CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C-CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCE-EEEEeCCC
Q 005235          569 KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-E-GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPL-FASCSDDC  645 (707)
Q Consensus       569 ~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-D-g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~l-laSgs~Dg  645 (707)
                      .......+.........|+++|.+.+|+.... . +.|..++++.. .........-..-+.|+|+|++.. +++-+..+
T Consensus       190 g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~  268 (386)
T 3v65_B          190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  268 (386)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred             CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence            54433333344466899999997776665543 3 67999998743 222223333345789999986654 44555667


Q ss_pred             cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .|..++.      .....   ...+......    ...+++. .+..+++....+.|..++
T Consensus       269 ~I~~~d~------dG~~~---~~~~~~~~~~----P~giav~-~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          269 VIERANL------DGSHR---KAVISQGLPH----PFAITVF-EDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEEEECT------TSCSC---EEEECSSCSS----EEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             EEEEEeC------CCCee---EEEEECCCCC----ceEEEEE-CCEEEEeeCCCCeEEEEE
Confidence            8888853      22211   1112222222    6777773 344445555566666554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.14  E-value=0.0042  Score=64.74  Aligned_cols=199  Identities=9%  Similarity=-0.066  Sum_probs=118.9

Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC---ceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEE
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK---LSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVY  565 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~---~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iw  565 (707)
                      .....+..++|++.+..|..+...  .+.|..+++...   ......+ .....+..+++.+.+..|+++.  .+.|.++
T Consensus        27 ~~~~~p~g~~~d~~~~~ly~~D~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~  104 (316)
T 1ijq_A           27 PNLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  104 (316)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCCCceEEEEEEeCCCEEEEEECC--CCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEE
Confidence            344567899999877766665543  248999998761   2220223 2334668999998776676664  6899999


Q ss_pred             ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC--CcEEEEECCCCCcceEEee-cCCCCEEEEEEcCCCCEEE-EE
Q 005235          566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE--GKLCWFDMDLSSKPYRVLK-CHPKDITNVAFHRSYPLFA-SC  641 (707)
Q Consensus       566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D--g~I~vwDl~~~~~~~~~l~-~h~~~I~~vafspdg~lla-Sg  641 (707)
                      ++........+.........++++|.+.+|+.....  +.|..++++..  ....+. ..-...+.+++++++..|. +-
T Consensus       105 ~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~--~~~~~~~~~~~~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             eCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC--CeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence            987554333344344668999999977666655543  68999998643  233332 2335678999998766554 44


Q ss_pred             eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          642 SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       642 s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      +..+.|..++..      .... ..+....+....    ...+++. .+..+++....+.|..++
T Consensus       183 ~~~~~I~~~d~d------g~~~-~~~~~~~~~~~~----P~giav~-~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          183 SKLHSISSIDVN------GGNR-KTILEDEKRLAH----PFSLAVF-EDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             TTTTEEEEEETT------SCSC-EEEEECTTTTSS----EEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEEecC------CCce-EEEeecCCccCC----cEEEEEE-CCEEEEEECCCCeEEEEe
Confidence            466789998642      2111 011111111111    5677774 344445555566676654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.12  E-value=8.1e-05  Score=87.65  Aligned_cols=198  Identities=12%  Similarity=0.082  Sum_probs=115.9

Q ss_pred             CeEEEEEc-CCCCEEEEEeCCCC--ccEEEEEECCCC-ceeeeeeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEE
Q 005235          496 MVSSVEWH-RRGDYLSTVMPAGE--SRAIFMHQLSKK-LSHRIPFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVY  565 (707)
Q Consensus       496 ~V~~v~~s-p~g~~lat~s~dg~--~~~V~Iwdl~~~-~~~~~~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iw  565 (707)
                      .+...+|| |+|++||.+...++  ...|+++|+.++ ......+.  .....++|+|+++.|+... +     ..|.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            57789999 99999987765331  236999999988 53211221  1235688999998877665 4     368889


Q ss_pred             ECCCCe--EEEEEe-CCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCCcce--EEee-cCCCCEEEEEEcCCCC
Q 005235          566 DLLKQR--LIKKLE-TGLKEVSSIAIHPAGDNLIVGSR---EGKLCWFDMDLSSKPY--RVLK-CHPKDITNVAFHRSYP  636 (707)
Q Consensus       566 Dl~~~~--~~~~l~-~~~~~I~sl~~spdg~~L~sGs~---Dg~I~vwDl~~~~~~~--~~l~-~h~~~I~~vafspdg~  636 (707)
                      ++.++.  ....+. .......++.|+|||++|+..+.   ...|.++|+.++....  ..+. .......++.|+..+.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~  332 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH  332 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence            988753  122333 23345678999999999887663   3458889998652223  4443 3345556666665444


Q ss_pred             EEEEEeCC--CcEEEEecccccCCCCCCcccceEE-eeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          637 LFASCSDD--CTAYVFHGMVYSDLNQNPLIVPLEI-LRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       637 llaSgs~D--g~I~Vwd~~~~~Dl~~~~~~~pl~~-l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      +++....+  +..+||.+    ++.+...   ... +..|...  ..+.++.+. .+.++++...+|..+||
T Consensus       333 l~~~t~~~~a~~~~L~~~----d~~~~~~---~~~~li~~~~~--~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          333 LVILTNEGGAVNHKLLIA----PRGQPSD---WSHVLVDHSED--VFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EEEEECTTTCTTCEEEEE----ETTSTTC---CCCEEECCCSS--EEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             EEEEeCCCCCCCcEEEEE----cCCCccc---ceeeEECCCCC--cEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            55555444  44444433    2221111   112 2223221  125556664 23455677778876655

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.11  E-value=0.0021  Score=68.21  Aligned_cols=155  Identities=12%  Similarity=0.028  Sum_probs=102.9

Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC
Q 005235          493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK  569 (707)
Q Consensus       493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~  569 (707)
                      ....+..++|++.+..|..+...  .+.|..+++...... ..+ ........+++.+.+..|+.+.  .+.|.++++..
T Consensus        71 ~~~~~~~l~~d~~~~~ly~~D~~--~~~I~r~~~~g~~~~-~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C           71 NLENAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVE-EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCE-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCceEEEEEeccccEEEEEecc--CCceEEEecCCCCce-EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence            34557899999877766665543  248999998876544 333 3345567899998777776665  68999999875


Q ss_pred             CeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CC-CcEEEEECCCCCcceEEe-ecCCCCEEEEEEcCCCCEE-EEEeCCC
Q 005235          570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGS-RE-GKLCWFDMDLSSKPYRVL-KCHPKDITNVAFHRSYPLF-ASCSDDC  645 (707)
Q Consensus       570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~D-g~I~vwDl~~~~~~~~~l-~~h~~~I~~vafspdg~ll-aSgs~Dg  645 (707)
                      ......+.........|+++|.+..|.... .. +.|..++++..  ....+ ...-..-+.++|+|++..| ++-+..+
T Consensus       148 ~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC--CcEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence            433333334445689999999766655544 44 78999998743  23333 2223457899999866644 4445567


Q ss_pred             cEEEEec
Q 005235          646 TAYVFHG  652 (707)
Q Consensus       646 ~I~Vwd~  652 (707)
                      .|..++.
T Consensus       226 ~I~~~~~  232 (349)
T 3v64_C          226 VIERANL  232 (349)
T ss_dssp             EEEEEET
T ss_pred             EEEEEeC
Confidence            8888854

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.10  E-value=0.012  Score=61.31  Aligned_cols=215  Identities=8%  Similarity=0.012  Sum_probs=136.0

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCCc
Q 005235          398 GTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMAS  476 (707)
Q Consensus       398 gtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~  476 (707)
                      ..|+..++.++.....+.....+.+++|.+.+. .|+.+. ..+.|..+++.....                      + 
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~-~ly~~D~~~~~I~~~~~~g~~~----------------------~-   65 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHG----------------------V-   65 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTT-EEEEEETTTTEEEEEEC-----------------------------
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCC-EEEEEECCCCcEEEEECCCCCC----------------------C-
Confidence            469999998877666666667789999998763 455544 457888877654100                      0 


Q ss_pred             EEEEecCCccceE-EeccCCCeEEEEEcCCCCEEEEE-eCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235          477 IVSWLQHDKLDGI-RLRHFKMVSSVEWHRRGDYLSTV-MPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI  553 (707)
Q Consensus       477 i~iW~~~~~~~~~-~~~h~~~V~~v~~sp~g~~lat~-s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~  553 (707)
                              ..... .......+..+++.+.+..|..+ ...+   .|.+.++...... ..+ ........++++|.+..
T Consensus        66 --------~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~---~I~~~~~~g~~~~-~~~~~~~~~P~~iavdp~~g~  133 (316)
T 1ijq_A           66 --------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG---TVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGF  133 (316)
T ss_dssp             ----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT---EEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTE
T ss_pred             --------cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCC---EEEEEeCCCCceE-EEEECCCCCcceEEeCCCCCE
Confidence                    00001 11122345788888755555444 3334   8999998765443 223 34467889999997777


Q ss_pred             EEEEe--C-CeEEEEECCCCeEEEEE-eCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEe-ec--CCCC
Q 005235          554 FFVST--K-KNIRVYDLLKQRLIKKL-ETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVL-KC--HPKD  625 (707)
Q Consensus       554 l~v~s--d-g~I~iwDl~~~~~~~~l-~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l-~~--h~~~  625 (707)
                      |+.+.  . +.|..+++... ....+ .........|+++|++..|..+. ..+.|..+|++.. . .+.+ ..  .-..
T Consensus       134 ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~-~~~~~~~~~~~~~  210 (316)
T 1ijq_A          134 MYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-N-RKTILEDEKRLAH  210 (316)
T ss_dssp             EEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-S-CEEEEECTTTTSS
T ss_pred             EEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-c-eEEEeecCCccCC
Confidence            77665  3 68988988643 33333 23446789999999877776654 5578999999743 2 2333 21  1234


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          626 ITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       626 I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      ..++++. .+.++++-...+.|..++.
T Consensus       211 P~giav~-~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          211 PFSLAVF-EDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             cEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence            5678885 4566667767788888864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.06  E-value=0.0013  Score=71.97  Aligned_cols=242  Identities=12%  Similarity=0.131  Sum_probs=136.7

Q ss_pred             cEEEEEEccC-CCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235          419 AIQYVAWNPL-PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV  497 (707)
Q Consensus       419 ~V~~v~~spd-g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V  497 (707)
                      ...+|+|.|+ ....|+++...+.|+.+++.++                                   ....+.......
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-----------------------------------~v~~~~~~~~~P  184 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-----------------------------------YVDIKTTNIGQC  184 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-----------------------------------EEEEECCCCSCE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCC-----------------------------------EEEEeecCCCCc
Confidence            3567888874 1114665554466777765433                                   111222334568


Q ss_pred             EEEEEcCCCCEEEEEeCCCC-ccEEEEEECCCCceeeeeeccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235          498 SSVEWHRRGDYLSTVMPAGE-SRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP-TRSIFFVST-KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg~-~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwDl~~~~~~~  574 (707)
                      ..|+|+++|+.+++...... ...+...+..........+........++++| ++.++++-. ++.|+.+|..++....
T Consensus       185 ~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~  264 (433)
T 4hw6_A          185 ADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE  264 (433)
T ss_dssp             EEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE
T ss_pred             cEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE
Confidence            89999999994444432111 11233333322221101222334567789999 555444433 6889999998776633


Q ss_pred             EE-eC-CCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcc---eEEeecC---------------CCCEEEEEE--
Q 005235          575 KL-ET-GLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKP---YRVLKCH---------------PKDITNVAF--  631 (707)
Q Consensus       575 ~l-~~-~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~---~~~l~~h---------------~~~I~~vaf--  631 (707)
                      .+ .. .......|+|+|+|++|.++ ...++|..++++.....   ...+.+.               -..-..+++  
T Consensus       265 ~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~  344 (433)
T 4hw6_A          265 EEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK  344 (433)
T ss_dssp             EEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred             EEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence            33 22 22334679999999955554 45678999887632111   1222221               123567899  


Q ss_pred             -------cCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC-------C-------CCCCeeEEEEc-CC
Q 005235          632 -------HRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS-------S-------NGRGVMDCKFH-PR  689 (707)
Q Consensus       632 -------spdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~-------~-------~~~gV~~l~fs-pd  689 (707)
                             .++|.++++-...+.|+.++.       .+.    +.++.|...       .       .-..-..|+++ ++
T Consensus       345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~-------~G~----v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~  413 (433)
T 4hw6_A          345 NEAYAGEEDEYDFYFCDRDSHTVRVLTP-------EGR----VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKR  413 (433)
T ss_dssp             CGGGTTSSCCEEEEEEETTTTEEEEECT-------TSE----EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTT
T ss_pred             cccccccCCCCcEEEEECCCCEEEEECC-------CCC----EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCC
Confidence                   777888877777788998842       111    223332211       0       00126789999 66


Q ss_pred             CCEEEEEeCCCcEEEEe
Q 005235          690 QPWLFTAGADSVIRLYC  706 (707)
Q Consensus       690 g~~L~s~g~Dg~IrlWd  706 (707)
                      +.++++-...+.|+..+
T Consensus       414 g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          414 KCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             TEEEEEEGGGTEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEe
Confidence            66666666677888775

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.04  E-value=0.0018  Score=70.92  Aligned_cols=203  Identities=11%  Similarity=0.122  Sum_probs=114.4

Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCC--ccEEEEEECCCCceeeeeeccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEECC
Q 005235          493 HFKMVSSVEWHRRGDYLSTVMPAGE--SRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP-TRSIFFVST-KKNIRVYDLL  568 (707)
Q Consensus       493 h~~~V~~v~~sp~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwDl~  568 (707)
                      .......|+|+++|++|+++...+.  ...+.+.+..........+........++++| ++.++++-. .+.|..|+..
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~  256 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFT  256 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            4456889999999996666654321  12344444333222102232334567889999 555444443 6899999998


Q ss_pred             CCeEEEEEeC-CCCCeEEEEEcCCCCEEEE-EECCCcEEEEECCCCCcc---eEEeecC---------------CCCEE-
Q 005235          569 KQRLIKKLET-GLKEVSSIAIHPAGDNLIV-GSREGKLCWFDMDLSSKP---YRVLKCH---------------PKDIT-  627 (707)
Q Consensus       569 ~~~~~~~l~~-~~~~I~sl~~spdg~~L~s-Gs~Dg~I~vwDl~~~~~~---~~~l~~h---------------~~~I~-  627 (707)
                      .+........ ...+...|+|+|+|++|++ -...++|..++.+.....   ..++.+.               -..-. 
T Consensus       257 ~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~  336 (430)
T 3tc9_A          257 TQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQ  336 (430)
T ss_dssp             TTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEE
T ss_pred             CCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcc
Confidence            7765333322 2246789999999995554 456778999887632111   1222221               00122 


Q ss_pred             EEEEc--------CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC-----CC--C-------CCCCeeEEE
Q 005235          628 NVAFH--------RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-----TS--S-------NGRGVMDCK  685 (707)
Q Consensus       628 ~vafs--------pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh-----~~--~-------~~~gV~~l~  685 (707)
                      .++..        ++|.++++-...+.|+.++.       .+.    +..+.+.     .+  .       .-..-..|+
T Consensus       337 gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-------~G~----v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~gia  405 (430)
T 3tc9_A          337 GTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-------QGR----VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIV  405 (430)
T ss_dssp             EEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-------TSE----EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEE
T ss_pred             eEEEccccccccCCCCeEEEEECCCcEEEEECC-------CCc----EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEE
Confidence            45543        34666666666677888741       111    2222221     00  0       001278999


Q ss_pred             EcCC-CCEEEEEeCCCcEEEEe
Q 005235          686 FHPR-QPWLFTAGADSVIRLYC  706 (707)
Q Consensus       686 fspd-g~~L~s~g~Dg~IrlWd  706 (707)
                      ++|+ +.++++-...+.|+.++
T Consensus       406 vd~~~g~lyVaD~~n~rIr~i~  427 (430)
T 3tc9_A          406 YDEERECFFIGDRENRRIRKIG  427 (430)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEE
T ss_pred             EECCCCEEEEEECCCCeEEEEc
Confidence            9995 55555555667788765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.03  E-value=0.0013  Score=66.60  Aligned_cols=201  Identities=11%  Similarity=0.122  Sum_probs=125.0

Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL  568 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~  568 (707)
                      +-...+..++|+|+++.|+++...  ...|...|+. +... ..+  ......-.+++.+++.++++.- ++.+.++++.
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~--~~~I~~ld~~-g~v~-~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINK--PAAIVEMTTN-GDLI-RTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEET--TEEEEEEETT-CCEE-EEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             CcccCcceeEEeCCCCEEEEEECC--CCeEEEEeCC-CCEE-EEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            555679999999987766665543  3489999998 5554 444  4446788999998887555543 6889999886


Q ss_pred             CCe---EEEEEe------CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC--CCCcceEEee-------cCCCCEEEEE
Q 005235          569 KQR---LIKKLE------TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD--LSSKPYRVLK-------CHPKDITNVA  630 (707)
Q Consensus       569 ~~~---~~~~l~------~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~--~~~~~~~~l~-------~h~~~I~~va  630 (707)
                      ...   .+....      ........|+|+|.++.|.++.......+|.++  .....+..+.       .+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            543   233332      123446899999999888887776665566554  1112233331       1234578999


Q ss_pred             EcCCCC-EEEEEeCCCcEEEEecccccCCCCCCcccceEEee-CCCC--CCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          631 FHRSYP-LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTS--SNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       631 fspdg~-llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~--~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                      |+|... +++.......+.++      |.... . +-...|. +..+  ..-..--.|+|.++|. |+.++..+.+..+
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~------d~~g~-~-~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f  249 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEV------TLVGE-V-IGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRF  249 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEE------CTTCC-E-EEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEE------cCCCC-E-EEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEE
Confidence            999654 55555566778888      43332 1 1222333 2111  0001268899999998 5555776666555

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.03  E-value=0.017  Score=62.33  Aligned_cols=220  Identities=7%  Similarity=0.014  Sum_probs=138.3

Q ss_pred             CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCC
Q 005235          397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA  475 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~  475 (707)
                      ...|+..++........+.....+.+|+|.+.+. .|+.+. ..+.|..+++......                      
T Consensus        91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~-~lywsD~~~~~I~~~~~~g~~~~----------------------  147 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGV----------------------  147 (400)
T ss_dssp             TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTT-EEEEEETTTTEEEEEEC----------------------------
T ss_pred             cceeEEEccCCcceeEeccccCcceEEeeeeccC-ceEEEecCCCeEEEEEcccCCCC----------------------
Confidence            3678999988776655555577889999998663 455444 4567777775432100                      


Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIF  554 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l  554 (707)
                              ................+++.+.+..|+.+...  .+.|.+.++...... ..+ ........++++|.+.+|
T Consensus       148 --------~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~--~~~I~~~~~~g~~~~-~l~~~~~~~P~~iavdp~~g~l  216 (400)
T 3p5b_L          148 --------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFM  216 (400)
T ss_dssp             --------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEECTTTCSEE-EEEECSSCCEEEEEEETTTTEE
T ss_pred             --------CcceEEEeCCCCCcccEEEEecCCceEEEECC--CCeEEEEeCCCCceE-EEEeCCCCCcceEEEecccCeE
Confidence                    00000111233467788998855555554432  248999998876554 333 445568999999987777


Q ss_pred             EEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEeec--CCCCEEE
Q 005235          555 FVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVLKC--HPKDITN  628 (707)
Q Consensus       555 ~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~--h~~~I~~  628 (707)
                      +.+.   .+.|...++........+.....+...|+++|++..|..+. ..+.|..+|++.. .....+..  .-....+
T Consensus       217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~g  295 (400)
T 3p5b_L          217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFS  295 (400)
T ss_dssp             EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEE
T ss_pred             EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEE
Confidence            7765   36899999875433333344446789999998887776664 4578999999744 32223332  1234557


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEec
Q 005235          629 VAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       629 vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +++. .+.++.+-...+.|..++.
T Consensus       296 l~v~-~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          296 LAVF-EDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             EEEE-TTEEEEEESSSCSEEEEES
T ss_pred             EEEe-CCEEEEecCCCCeEEEEEc
Confidence            7773 3456666667788888863

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.02  E-value=0.0017  Score=71.07  Aligned_cols=234  Identities=10%  Similarity=0.011  Sum_probs=139.4

Q ss_pred             CCCCCCCcccCC-CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC-----eEEEEECC
Q 005235          375 LPSRKDLKPYPV-ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ-----DVLILNTG  448 (707)
Q Consensus       375 lp~~~~l~pfp~-~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~-----~V~lwd~~  448 (707)
                      |..|..+..-|. ....||.+...+.|+.++..++.....+.......+|+|+++|.  |+++...+     .+..++..
T Consensus       138 ~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          138 FDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEECGG
T ss_pred             cCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEEECC
Confidence            334444444342 22344444433889999998887765544466789999999993  66665432     12222110


Q ss_pred             CCCchhcccccceeeecccccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEEC
Q 005235          449 LGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQL  526 (707)
Q Consensus       449 ~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl  526 (707)
                      .                                   ... ............+++++ +|..+++-..++   .|..++.
T Consensus       216 ~-----------------------------------~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~---~V~~~d~  257 (433)
T 4hw6_A          216 S-----------------------------------GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHA---MISSYDP  257 (433)
T ss_dssp             G-----------------------------------TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCS---EEEEECT
T ss_pred             C-----------------------------------CeeccccccccCCCCEEEEeCCCCeEEEEECCCC---EEEEEEC
Confidence            0                                   000 01111234556788999 666555544444   8999998


Q ss_pred             CCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC--CCeE--EEEEeCC---------------CCCe
Q 005235          527 SKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL--KQRL--IKKLETG---------------LKEV  583 (707)
Q Consensus       527 ~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~--~~~~--~~~l~~~---------------~~~I  583 (707)
                      .++......+  ........++|+|++..|+++.  .+.|+.+++.  ++..  ...+.+.               -...
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P  337 (433)
T 4hw6_A          258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGP  337 (433)
T ss_dssp             TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSE
T ss_pred             CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCC
Confidence            8665521222  2233345799999999777776  5889998865  2321  1122211               1236


Q ss_pred             EEEEE---------cCCCCEEEEEECCCcEEEEECCCCCcceEEeecCC------------------CCEEEEEEc-CCC
Q 005235          584 SSIAI---------HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP------------------KDITNVAFH-RSY  635 (707)
Q Consensus       584 ~sl~~---------spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~------------------~~I~~vafs-pdg  635 (707)
                      ..+++         .++|.++++-...++|+.++.. + . +.++.+..                  ..-..|+++ +++
T Consensus       338 ~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G-~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g  414 (433)
T 4hw6_A          338 NQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-G-R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK  414 (433)
T ss_dssp             EEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-S-E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT
T ss_pred             ccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-C-C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC
Confidence            77999         7777777777777889999853 3 2 33333221                  135678888 667


Q ss_pred             CEEEEEeCCCcEEEEe
Q 005235          636 PLFASCSDDCTAYVFH  651 (707)
Q Consensus       636 ~llaSgs~Dg~I~Vwd  651 (707)
                      .++++-.....|+.++
T Consensus       415 ~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          415 CFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             EEEEEEGGGTEEEEEE
T ss_pred             EEEEEeCCCCEEEEEe
Confidence            7776666677777763

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.0022  Score=70.18  Aligned_cols=234  Identities=12%  Similarity=0.112  Sum_probs=137.0

Q ss_pred             CCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC-----eEEEEECCC
Q 005235          375 LPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ-----DVLILNTGL  449 (707)
Q Consensus       375 lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~-----~V~lwd~~~  449 (707)
                      +..|..+..-|.....||.+...+.|+.+|+.++..............|+|+++++ .|+++...+     .+.+++...
T Consensus       136 ~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~-~lyvad~~~~~~~~~v~~~~~~g  214 (430)
T 3tc9_A          136 FGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEAD-SMIITNDQNNNDRPNNYILTRES  214 (430)
T ss_dssp             CSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSS-EEEEEECCSCTTSEEEEEEEGGG
T ss_pred             CCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCC-EEEEEeCCCCcccceEEEEeCCC
Confidence            34444443333122345555444889999998877655555567789999999993 366555421     222222111


Q ss_pred             CCchhcccccceeeecccccccCCCCcEEEEecCCccc-eEEeccCCCeEEEEEcC-CCCEEEEEeCCCCccEEEEEECC
Q 005235          450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD-GIRLRHFKMVSSVEWHR-RGDYLSTVMPAGESRAIFMHQLS  527 (707)
Q Consensus       450 ~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~-~~~~~h~~~V~~v~~sp-~g~~lat~s~dg~~~~V~Iwdl~  527 (707)
                      .                                   .. ............++++| +|..+++-..++   .|..++..
T Consensus       215 ~-----------------------------------~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~---~V~~~~~~  256 (430)
T 3tc9_A          215 G-----------------------------------FKVITELTKGQNCNGAETHPINGELYFNSWNAG---QVFRYDFT  256 (430)
T ss_dssp             T-----------------------------------SCSEEEEEECSSCCCEEECTTTCCEEEEETTTT---EEEEEETT
T ss_pred             c-----------------------------------eeeeeeeccCCCceEEEEeCCCCEEEEEECCCC---EEEEEECC
Confidence            0                                   00 00111133467788999 666555555544   89999998


Q ss_pred             CCceeeeee--ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC--CeE--EEEEeCC---------------CCCeE
Q 005235          528 KKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK--QRL--IKKLETG---------------LKEVS  584 (707)
Q Consensus       528 ~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~--~~~--~~~l~~~---------------~~~I~  584 (707)
                      ..... ..+  ........++|+|++.+|+++.  .+.|..++...  +..  +..+.+.               -....
T Consensus       257 ~~~~~-~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~  335 (430)
T 3tc9_A          257 TQETT-PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPR  335 (430)
T ss_dssp             TTEEE-EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEE
T ss_pred             CCcEE-EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCc
Confidence            76542 222  3335678999999999777775  68899987653  322  2222211               01133


Q ss_pred             -EEEEc--------CCCCEEEEEECCCcEEEEECCCCCcceEEeecC------------------CCCEEEEEEcC-CCC
Q 005235          585 -SIAIH--------PAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH------------------PKDITNVAFHR-SYP  636 (707)
Q Consensus       585 -sl~~s--------pdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h------------------~~~I~~vafsp-dg~  636 (707)
                       .+++.        ++|.++++-...++|+.++.. + . +.++.+.                  -..-+.|+++| ++.
T Consensus       336 ~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G-~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~  412 (430)
T 3tc9_A          336 QGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-G-R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEEREC  412 (430)
T ss_dssp             EEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-S-E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred             ceEEEccccccccCCCCeEEEEECCCcEEEEECCC-C-c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCE
Confidence             55653        346666666667789888843 3 3 3333321                  11467899998 466


Q ss_pred             EEEEEeCCCcEEEEe
Q 005235          637 LFASCSDDCTAYVFH  651 (707)
Q Consensus       637 llaSgs~Dg~I~Vwd  651 (707)
                      ++++-.....|+.++
T Consensus       413 lyVaD~~n~rIr~i~  427 (430)
T 3tc9_A          413 FFIGDRENRRIRKIG  427 (430)
T ss_dssp             EEEEEGGGTEEEEEE
T ss_pred             EEEEECCCCeEEEEc
Confidence            776666677787774

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.93  E-value=0.0087  Score=62.63  Aligned_cols=189  Identities=12%  Similarity=0.114  Sum_probs=107.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEE-EC--CC
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVY-DL--LK  569 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iw-Dl--~~  569 (707)
                      +.+..|.+.+++..++++. ++   .|. .....+..- ..+  .....+..+++.|++.+++++..+.+..- |-  .+
T Consensus       122 ~~~~~i~~~~~~~~~~~~~-~g---~v~-~S~DgG~tW-~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t  195 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITN-VG---AIY-RTKDSGKNW-QALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA  195 (327)
T ss_dssp             SCEEEEEEEETTEEEEEET-TC---CEE-EESSTTSSE-EEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS
T ss_pred             CCeEEEEEECCCCEEEEeC-Cc---cEE-EEcCCCCCC-EEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc
Confidence            4466777777776666553 33   332 223334333 222  44567899999999988888776655543 32  22


Q ss_pred             CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-c---CCCCEEEEEEcCCCCEEEEEeCCC
Q 005235          570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-C---HPKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-~---h~~~I~~vafspdg~llaSgs~Dg  645 (707)
                      -+.+.  ......+..+++.+++..+++ +.+|.+++.+.+.+ .....+. .   +...+.+++|.+++.+++++. +|
T Consensus       196 W~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g  270 (327)
T 2xbg_A          196 WEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AG  270 (327)
T ss_dssp             CEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TT
T ss_pred             eeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CC
Confidence            23331  234466889999999876654 56787777643212 2122221 1   224589999999888777664 67


Q ss_pred             cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .|..-       ...+.....+.........    +.++.|.+++ .++.+|.+|+|.-++
T Consensus       271 ~i~~S-------~DgG~tW~~~~~~~~~~~~----~~~v~~~~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          271 ALLCS-------QDGGQTWQQDVDVKKVPSN----FYKILFFSPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             CEEEE-------SSTTSSCEECGGGTTSSSC----CCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred             eEEEe-------CCCCcccEEcCccCCCCCC----eEEEEEECCC-ceEEEcCCceEEEEc
Confidence            66432       1122221111111112222    7888897654 467778899887654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.91  E-value=0.00087  Score=78.82  Aligned_cols=151  Identities=12%  Similarity=0.129  Sum_probs=91.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCC--ccEEEEEECCCCceee-eee--ccCCCeEEEEEeCCCCEEEEEe----CCeEEEEECC
Q 005235          498 SSVEWHRRGDYLSTVMPAGE--SRAIFMHQLSKKLSHR-IPF--KLHGLPVSSVFHPTRSIFFVST----KKNIRVYDLL  568 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~-~~~--~~~~~V~~v~fspd~~~l~v~s----dg~I~iwDl~  568 (707)
                      ..++|+|+|+.|+.+..+..  ...|.+|++.+..... ..+  ........+.|+|+|++|+...    ...|.++|+.
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            46889999998888876532  2478999998765321 233  2234567889999999888754    3568999998


Q ss_pred             CC--eE-EEEEeC-CCCCeEEEEEcCCCCEEEE-EECC----CcEEEEECCCCCcceEE-eecCCC--CEEEEEEcCCCC
Q 005235          569 KQ--RL-IKKLET-GLKEVSSIAIHPAGDNLIV-GSRE----GKLCWFDMDLSSKPYRV-LKCHPK--DITNVAFHRSYP  636 (707)
Q Consensus       569 ~~--~~-~~~l~~-~~~~I~sl~~spdg~~L~s-Gs~D----g~I~vwDl~~~~~~~~~-l~~h~~--~I~~vafspdg~  636 (707)
                      ++  .. +..+.. ......++.|+. |..|+. ...+    ..|..+|+.+. ..... +..|..  .+..+.+. .+.
T Consensus       304 ~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~  380 (751)
T 2xe4_A          304 KGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNY  380 (751)
T ss_dssp             SCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSE
T ss_pred             CCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCE
Confidence            75  22 133332 334456666654 555544 4333    25777777642 12223 334444  34555554 234


Q ss_pred             EEEEEeCCCcEEEEe
Q 005235          637 LFASCSDDCTAYVFH  651 (707)
Q Consensus       637 llaSgs~Dg~I~Vwd  651 (707)
                      ++++...+|..+||-
T Consensus       381 lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          381 LVVAGRRAGLTRIWT  395 (751)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             EEEEEEeCCEEEEEE
Confidence            667777888766663

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.89  E-value=0.013  Score=63.40  Aligned_cols=157  Identities=9%  Similarity=-0.024  Sum_probs=104.5

Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc----eeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEE
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL----SHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRV  564 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~----~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~i  564 (707)
                      .....+..|+|++.+..|..+....  +.|..+++....    .. ..+ .....+..+++.+.+..|+.+.  .+.|.+
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~--~~I~~~~~~g~~~~~~~~-~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~  185 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQ--RMICSTQLDRAHGVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  185 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTT--TEEEEEEC------CCCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccCcceEEeeeeccCceEEEecCC--CeEEEEEcccCCCCCcce-EEEeCCCCCcccEEEEecCCceEEEECCCCeEEE
Confidence            4456788999998777666665432  488888887632    22 233 3456788999998666676665  689999


Q ss_pred             EECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE-
Q 005235          565 YDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR--EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC-  641 (707)
Q Consensus       565 wDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~--Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg-  641 (707)
                      .++........+.........|+++|.+.+|+....  .+.|...+++.. .....+...-...+.|++++++..|+.+ 
T Consensus       186 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD  264 (400)
T 3p5b_L          186 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVD  264 (400)
T ss_dssp             ECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEE
Confidence            999866544444445556899999997777766553  378999998743 3233333333567899999877655554 


Q ss_pred             eCCCcEEEEec
Q 005235          642 SDDCTAYVFHG  652 (707)
Q Consensus       642 s~Dg~I~Vwd~  652 (707)
                      +..+.|..++.
T Consensus       265 ~~~~~I~~~d~  275 (400)
T 3p5b_L          265 SKLHSISSIDV  275 (400)
T ss_dssp             TTTTEEEEEET
T ss_pred             CCCCEEEEEeC
Confidence            45678888854

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.86  E-value=0.0013  Score=75.12  Aligned_cols=239  Identities=14%  Similarity=0.099  Sum_probs=138.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCC-----cEEE-EEEccCCCccEEEEEe------CCeEEEEECCCCCchhccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIGE-----AIQY-VAWNPLPELPVLAVSV------GQDVLILNTGLGNEEEQRR  457 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~-----~V~~-v~~spdg~~~lla~s~------d~~V~lwd~~~~~~~~~~~  457 (707)
                      .+|.++.|+.|.-+|..||+.+.......     .+.+ ... -++  .+++++.      ++.|+.+|..++...-...
T Consensus       123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT--EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC--EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence            38888999999999999999998776532     2221 111 144  4555553      7899999999886522111


Q ss_pred             ccc-e-------------------------------------------eeeccc-ccccCC----------------CCc
Q 005235          458 VKD-L-------------------------------------------LHVETP-TAPDDN----------------MAS  476 (707)
Q Consensus       458 ~~~-v-------------------------------------------~~~~~~-~~~~~~----------------d~~  476 (707)
                      ... .                                           +..... +..+..                ...
T Consensus       200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s  279 (599)
T 1w6s_A          200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (599)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce
Confidence            100 0                                           000000 111111                136


Q ss_pred             EEEEecCCccceEE--e-ccCC-------CeEEEEEc-CCC---CEEEEEeCCCCccEEEEEECCCCceeeeee--cc--
Q 005235          477 IVSWLQHDKLDGIR--L-RHFK-------MVSSVEWH-RRG---DYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KL--  538 (707)
Q Consensus       477 i~iW~~~~~~~~~~--~-~h~~-------~V~~v~~s-p~g---~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~--  538 (707)
                      +..++..++...-.  . .|..       ...-+... .+|   ..++.++.+|   .+.+.|..+++.. ..+  ..  
T Consensus       280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~l-w~~~~~~~~  355 (599)
T 1w6s_A          280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNG---IVYTLDRTDGALV-SANKLDDTV  355 (599)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTS---EEEEEETTTCCEE-EEEESSTTC
T ss_pred             EEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCc---EEEEEECCCCCEe-ecccccCCc
Confidence            77777776655321  1 1211       11112222 467   4667777777   9999999888765 333  11  


Q ss_pred             ---------CC-C--------------------------eEEEEEeCCCCEEEEE-------------------------
Q 005235          539 ---------HG-L--------------------------PVSSVFHPTRSIFFVS-------------------------  557 (707)
Q Consensus       539 ---------~~-~--------------------------V~~v~fspd~~~l~v~-------------------------  557 (707)
                               .+ +                          -..++|+|+..++++.                         
T Consensus       356 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~  435 (599)
T 1w6s_A          356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGAT  435 (599)
T ss_dssp             CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             ccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceeccc
Confidence                     11 0                          1245677776666553                         


Q ss_pred             ---------------eCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC
Q 005235          558 ---------------TKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       558 ---------------sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                                     ..+.|..||+.+++.+.+.......... .+.-.|.+|++|+.|+.|+.||.+++ +.+-.++..
T Consensus       436 ~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~tagg~vf~gt~dg~l~A~D~~tG-~~lW~~~l~  513 (599)
T 1w6s_A          436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-TMATAGDLVFYGTLDGYLKARDSDTG-DLLWKFKIP  513 (599)
T ss_dssp             EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECS
T ss_pred             ceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-ceEecCCEEEEECCCCeEEEEECCCC-CEEEEeeCC
Confidence                           1367999999999988777533211111 12224678888999999999999998 555555533


Q ss_pred             CC-CEEEEEEcCCCCE
Q 005235          623 PK-DITNVAFHRSYPL  637 (707)
Q Consensus       623 ~~-~I~~vafspdg~l  637 (707)
                      .. ...-+.|..+|++
T Consensus       514 ~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          514 SGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             SCCCSCCEEEEETTEE
T ss_pred             CCcEeccEEEEeCCEE
Confidence            32 1223556667763

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.85  E-value=0.00051  Score=79.42  Aligned_cols=262  Identities=9%  Similarity=0.007  Sum_probs=139.7

Q ss_pred             CCcEEEEEeCCC-----------cEEEEeCCCCeEEE--EEec--CCcEEEEEEccCCCccEEEEEe--CCeEEEEECCC
Q 005235          387 ACYLEYKGSTDG-----------TVRIWEVESGRCLR--VLEI--GEAIQYVAWNPLPELPVLAVSV--GQDVLILNTGL  449 (707)
Q Consensus       387 ~~~~l~sgs~Dg-----------tVrIWd~~tg~~l~--~l~~--~~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~  449 (707)
                      ++.+++.|+.+.           .+.+||..+++...  .+..  .....++++..++  .|++.+.  +..+.+||+.+
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g--~lyv~GG~~~~~v~~yd~~t  274 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG--QIVVTGGNDAKKTSLYDSSS  274 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS--CEEEECSSSTTCEEEEEGGG
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC--CEEEeCCCCCCceEEecCcC
Confidence            566777776543           58899998876432  2222  2233457778888  3444443  44788888654


Q ss_pred             CCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEe-CCC--CccEEEEEEC
Q 005235          450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM-PAG--ESRAIFMHQL  526 (707)
Q Consensus       450 ~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s-~dg--~~~~V~Iwdl  526 (707)
                      .                            .|..-..    + .....-.+++..++|+.++.|+ .++  ....+.+||.
T Consensus       275 ~----------------------------~W~~~~~----~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          275 D----------------------------SWIPGPD----M-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             T----------------------------EEEECCC----C-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             C----------------------------ceeECCC----C-CccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence            3                            2321110    0 1111113455667899999888 343  1247899999


Q ss_pred             CCCceeee------eeccCCCeEEEEEeCCCCEEEEE----------eCCeEEEEECCCCeEEEEEeCCC---------C
Q 005235          527 SKKLSHRI------PFKLHGLPVSSVFHPTRSIFFVS----------TKKNIRVYDLLKQRLIKKLETGL---------K  581 (707)
Q Consensus       527 ~~~~~~~~------~~~~~~~V~~v~fspd~~~l~v~----------sdg~I~iwDl~~~~~~~~l~~~~---------~  581 (707)
                      .+......      ++.....  ..++..++..++.+          ....+..||..+...........         .
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~--~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~  399 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADK--QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM  399 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCT--TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred             CCCcceeCCCccccccccccc--cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCC
Confidence            87764411      1100000  01122233333333          23567899998775443332221         1


Q ss_pred             CeEEEEEc-CCCCEEEEEECCC-----------cEEEEECCCCCcceEEee---cCCCC-EEEEEEcCCCCEEEEEeCC-
Q 005235          582 EVSSIAIH-PAGDNLIVGSREG-----------KLCWFDMDLSSKPYRVLK---CHPKD-ITNVAFHRSYPLFASCSDD-  644 (707)
Q Consensus       582 ~I~sl~~s-pdg~~L~sGs~Dg-----------~I~vwDl~~~~~~~~~l~---~h~~~-I~~vafspdg~llaSgs~D-  644 (707)
                      .-.++.+. .++..+++|+.++           .|.+||..+. . ...+.   -+... -.+++..|++.+++.|+.+ 
T Consensus       400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~-~-W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~  477 (656)
T 1k3i_A          400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS-P-NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR  477 (656)
T ss_dssp             TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC-C-EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred             CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC-C-eeEEccCCCCCCcccCCeEECCCCCEEEECCccc
Confidence            23445554 3677888887543           5778887654 2 22221   12222 2345667899999998854 


Q ss_pred             ----------CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          645 ----------CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       645 ----------g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                                ..+.+||...      +. ...+..+.....    +...+.+.|+++.++.||.
T Consensus       478 ~~~~~~~~~~~~v~~ydp~t------~~-W~~~~~~~~~R~----~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          478 GIPFEDSTPVFTPEIYVPEQ------DT-FYKQNPNSIVRV----YHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCTTCCCSBCCCCEEEEGGG------TE-EEECCCCSSCCC----TTEEEEECTTSCEEEEECC
T ss_pred             CcCcCCCCcccceEEEcCCC------Cc-eeecCCCCCccc----cccHhhcCCCcEEEecCCC
Confidence                      4678886432      11 001111111111    1334556799999999885

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.81  E-value=0.015  Score=60.67  Aligned_cols=222  Identities=9%  Similarity=0.056  Sum_probs=133.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCe--EEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecc
Q 005235          390 LEYKGSTDGTVRIWEVESGR--CLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~--~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      ++++.  ...|+..++....  ....+.....+.+|+|.+.+. .|+.+. ..+.|..+++......             
T Consensus         7 ll~~~--~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~-~lyw~D~~~~~I~r~~~~g~~~~-------------   70 (318)
T 3sov_A            7 LLYAN--RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHG-LIYWSDVSEEAIKRTEFNKTESV-------------   70 (318)
T ss_dssp             EEEEC--EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGT-EEEEEETTTTEEEEEETTSSSCC-------------
T ss_pred             EEEEc--cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCC-EEEEEECCCCcEEEEEccCCCce-------------
Confidence            44443  4568999987653  222233334577899998653 444443 4566777765433100             


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS  545 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v  545 (707)
                                          .............+++.+.+..|..+...  .+.|.+.++...... ..+ ........+
T Consensus        71 --------------------~~~~~~~l~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~~-~l~~~~~~~P~gi  127 (318)
T 3sov_A           71 --------------------QNVVVSGLLSPDGLACDWLGEKLYWTDSE--TNRIEVSNLDGSLRK-VLFWQELDQPRAI  127 (318)
T ss_dssp             --------------------CEEEEECCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCSCE-EEECSSCSSEEEE
T ss_pred             --------------------EEEEcCCCCCccEEEEEcCCCeEEEEECC--CCEEEEEECCCCcEE-EEEeCCCCCccEE
Confidence                                00111222456788888755555444332  238999998765443 333 445678899


Q ss_pred             EEeCCCCEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcceEEeec
Q 005235          546 VFHPTRSIFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       546 ~fspd~~~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                      +++|.+..|+.+.   .+.|..+++........+...-...+.|+|+|++..|..+ +..+.|..+|++.. .....+..
T Consensus       128 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~  206 (318)
T 3sov_A          128 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKG  206 (318)
T ss_dssp             EEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECS
T ss_pred             EEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecC
Confidence            9999877777765   3788888886433222233344568999999977766655 45678999999743 22222332


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      ......++++.. +.++.+-...+.|..++.
T Consensus       207 ~~~~P~glav~~-~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          207 SLPHPFALTLFE-DILYWTDWSTHSILACNK  236 (318)
T ss_dssp             CCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence            334566777753 455666666778888865

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.79  E-value=0.0047  Score=68.41  Aligned_cols=202  Identities=12%  Similarity=0.158  Sum_probs=118.3

Q ss_pred             CCeEEEEE-------cCCCCEEEEEeCCCC----ccEEEEEECCC-Cceee----eeeccCCCeEEEEEeCCCCEEEEEe
Q 005235          495 KMVSSVEW-------HRRGDYLSTVMPAGE----SRAIFMHQLSK-KLSHR----IPFKLHGLPVSSVFHPTRSIFFVST  558 (707)
Q Consensus       495 ~~V~~v~~-------sp~g~~lat~s~dg~----~~~V~Iwdl~~-~~~~~----~~~~~~~~V~~v~fspd~~~l~v~s  558 (707)
                      .....|+|       +++|++|+++...+.    ...|.+.+... +....    ..+........++++|++..|+++.
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence            35789999       999997777765541    23466665433 11110    1222223456789999766666665


Q ss_pred             --CCeEEEEECC-------CCeE-----------EEE-Ee-CCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcc
Q 005235          559 --KKNIRVYDLL-------KQRL-----------IKK-LE-TGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKP  615 (707)
Q Consensus       559 --dg~I~iwDl~-------~~~~-----------~~~-l~-~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~  615 (707)
                        ++.|..+|+.       ++..           ... +. +...+...|+|+|+|++|.++ +...+|+.++.+.....
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~  345 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE  345 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence              6889999987       4543           222 22 233557899999999965554 55678988776532111


Q ss_pred             e---EEeecC---C------------CCEE-EEEEc-------CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE
Q 005235          616 Y---RVLKCH---P------------KDIT-NVAFH-------RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI  669 (707)
Q Consensus       616 ~---~~l~~h---~------------~~I~-~vafs-------pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~  669 (707)
                      +   .++.+.   .            ..-. .++..       +.|.++++-+....|+.++.       .+ .   +.+
T Consensus       346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-------~G-~---v~T  414 (496)
T 3kya_A          346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-------EG-I---VST  414 (496)
T ss_dssp             ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-------TC-B---EEE
T ss_pred             ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-------CC-C---EEE
Confidence            1   223221   0            1133 44554       56677777777788888841       12 1   334


Q ss_pred             eeCCCC------------CC--------CCCeeEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 005235          670 LRGHTS------------SN--------GRGVMDCKFHPR-QPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       670 l~gh~~------------~~--------~~gV~~l~fspd-g~~L~s~g~Dg~IrlWdl  707 (707)
                      +.|...            .+        -..-..|+++++ +.++++=...+.||.+++
T Consensus       415 iaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~  473 (496)
T 3kya_A          415 YAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM  473 (496)
T ss_dssp             EEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence            433210            00        012678999997 666666666778888763

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.77  E-value=0.014  Score=60.90  Aligned_cols=155  Identities=11%  Similarity=-0.045  Sum_probs=101.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR  571 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~  571 (707)
                      ..+..++|++.+..|..+...  .+.|..+++.........+ ..-..+..+++.+.+..|+.+.  .+.|.++++....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~--~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETT--TTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CccEEEEEEeCCCEEEEEECC--CCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            356789999866666555432  2489999988764321223 3335677899998776666664  6899999987543


Q ss_pred             EEEEEeCCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEE
Q 005235          572 LIKKLETGLKEVSSIAIHPAGDNLIVGSR--EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLF-ASCSDDCTAY  648 (707)
Q Consensus       572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~--Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ll-aSgs~Dg~I~  648 (707)
                      ....+.........++++|.+.+|+....  .+.|..++++.. .....+...-..-+.++|++++..| ++=+..+.|.
T Consensus       113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~  191 (318)
T 3sov_A          113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  191 (318)
T ss_dssp             CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence            32223344466899999997777766653  578999998743 2222222223456899999966644 4445667888


Q ss_pred             EEec
Q 005235          649 VFHG  652 (707)
Q Consensus       649 Vwd~  652 (707)
                      .++.
T Consensus       192 ~~d~  195 (318)
T 3sov_A          192 KSNL  195 (318)
T ss_dssp             EEET
T ss_pred             EEcC
Confidence            8854

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.72  E-value=0.0081  Score=63.19  Aligned_cols=201  Identities=12%  Similarity=0.134  Sum_probs=123.5

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccC----CCc-cEEEEE-e---CCeEEEEECCCCCchhcccc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPL----PEL-PVLAVS-V---GQDVLILNTGLGNEEEQRRV  458 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spd----g~~-~lla~s-~---d~~V~lwd~~~~~~~~~~~~  458 (707)
                      .++++.....+-+.+||+ +|+.+..+.. +.++.|..-|+    |.. -+++++ .   +++|.+|++......+    
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l----  113 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL----  113 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE----
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce----
Confidence            346666677788999999 8999988865 67888887773    211 033333 3   4678888653211100    


Q ss_pred             cceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE--cCC-CC-EEEEEeCCCCccEEEEEECC---CC--
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW--HRR-GD-YLSTVMPAGESRAIFMHQLS---KK--  529 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~--sp~-g~-~lat~s~dg~~~~V~Iwdl~---~~--  529 (707)
                                         ...  ..... .+..-...+..+|+  ++. +. |+++...+|   .+..|++.   .+  
T Consensus       114 -------------------~~i--~~~~~-pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G---~~~q~~l~~~~~g~~  168 (355)
T 3amr_A          114 -------------------QSM--TDPDH-PIATAINEVYGFTLYHSQKTGKYYAMVTGKEG---EFEQYELKADKNGYI  168 (355)
T ss_dssp             -------------------EEC--SCTTS-CEECCCSSCCCEEEEECTTTCCEEEEEECSSS---EEEEEEEEECTTSCE
T ss_pred             -------------------eec--ccccc-CcCCCCCCeeEEEEEecCCCCcEEEEEECCCC---eEEEEEEEeCCCCcc
Confidence                               000  00000 00011145666776  664 44 566666666   88888873   22  


Q ss_pred             --ceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECC-----CCeEEEEEe-CCC-CCeEEEEE--cCCCC-EEE
Q 005235          530 --LSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLL-----KQRLIKKLE-TGL-KEVSSIAI--HPAGD-NLI  596 (707)
Q Consensus       530 --~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~-----~~~~~~~l~-~~~-~~I~sl~~--spdg~-~L~  596 (707)
                        +.. +.|...+.+..++..+....|+++- +..|..|+..     +++++..+. ++. ..+..|++  .++|+ +|+
T Consensus       169 ~~~lV-R~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi  247 (355)
T 3amr_A          169 SGKKV-RAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM  247 (355)
T ss_dssp             EEEEE-EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred             cceEE-EEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence              223 5566677899999999999999998 6668888855     345665542 222 35888888  56666 676


Q ss_pred             EEE-CCCcEEEEECCCCCcceEEee
Q 005235          597 VGS-REGKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       597 sGs-~Dg~I~vwDl~~~~~~~~~l~  620 (707)
                      +++ .+.++.+||.....+.+..|.
T Consensus       248 vSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          248 ASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCCcEEEEEE
Confidence            666 567899999973335556663

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.66  E-value=0.055  Score=63.61  Aligned_cols=221  Identities=7%  Similarity=0.016  Sum_probs=135.9

Q ss_pred             CCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235          396 TDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM  474 (707)
Q Consensus       396 ~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d  474 (707)
                      ....|+..++..+.....+.....+.+|+|.+... .|+.+. ..+.|+.+++......                     
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~-~lY~sD~~~~~I~~~~l~g~~~~---------------------  459 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGV---------------------  459 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTT-EEEEEETTTTEEEEEEC---------------------------
T ss_pred             cccceeEeeccCCcceeeecCCCceEEEeecccCC-eeEEeeccceeEEEEeccCCCCC---------------------
Confidence            34568888887666555555567788999988653 344444 4466777665431000                     


Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI  553 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~  553 (707)
                               +....++.........|++.+.+..|+.+...  .+.|.+.++...... ..+ ........|+++|.+.+
T Consensus       460 ---------~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~--~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~  527 (791)
T 3m0c_C          460 ---------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGF  527 (791)
T ss_dssp             -----------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTE
T ss_pred             ---------cceeEEEecCCCCcceeeeeecCCcEEEEecC--CCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCC
Confidence                     00001111234556789998877666655542  349999999866543 333 44566899999998777


Q ss_pred             EEEEe--C-CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcceEEeecC--CCCEE
Q 005235          554 FFVST--K-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKPYRVLKCH--PKDIT  627 (707)
Q Consensus       554 l~v~s--d-g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~~~~l~~h--~~~I~  627 (707)
                      |+.+.  . +.|.+.++........+.....+...|++++.+..|+.+. ..++|..++++.. .....+...  -....
T Consensus       528 LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~  606 (791)
T 3m0c_C          528 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPF  606 (791)
T ss_dssp             EEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEE
T ss_pred             EEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCC
Confidence            77765  3 6799999875444433444446799999998777776664 4567999998744 333333321  22345


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          628 NVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       628 ~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +|++.. +.++++-...+.|...+.
T Consensus       607 glav~~-~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          607 SLAVFE-DKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             EEEEET-TEEEEEETTTTEEEEEET
T ss_pred             EEEEeC-CEEEEEECCCCEEEEEeC
Confidence            666643 345555556677777753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.63  E-value=0.0051  Score=64.20  Aligned_cols=155  Identities=8%  Similarity=0.051  Sum_probs=108.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCCccEEEEEECCCCceeeeeecc-----CC--CeEEEEE---eCCCCEEEEEe----
Q 005235          494 FKMVSSVEWHRRGDYLSTVM-PAGESRAIFMHQLSKKLSHRIPFKL-----HG--LPVSSVF---HPTRSIFFVST----  558 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s-~dg~~~~V~Iwdl~~~~~~~~~~~~-----~~--~V~~v~f---spd~~~l~v~s----  558 (707)
                      ..-..+++|++....|..++ ..+   +|..|+...+......+..     ..  .+..+.|   .|++.+++++.    
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g---~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKG---RIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTT---EEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCC---EEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            34456889998666666666 556   9999999865543133322     11  3578999   68877777543    


Q ss_pred             ----------CCeEEEEECC---CCeEEEEEeC-------------CCCCeEEEEEcCCCCEEEEEECC-CcEEEEECCC
Q 005235          559 ----------KKNIRVYDLL---KQRLIKKLET-------------GLKEVSSIAIHPAGDNLIVGSRE-GKLCWFDMDL  611 (707)
Q Consensus       559 ----------dg~I~iwDl~---~~~~~~~l~~-------------~~~~I~sl~~spdg~~L~sGs~D-g~I~vwDl~~  611 (707)
                                ++.|..||+.   +++.+....-             .......|++.++|+..++++.. +.|..++.+.
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence                      4779999999   7776655431             11247899999999999999998 8888887763


Q ss_pred             CCcceEEee------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          612 SSKPYRVLK------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       612 ~~~~~~~l~------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      .  ....+-      ......+.++++|+|.+|++....|.+..||+.
T Consensus       169 ~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          169 K--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             C--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             C--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            2  233221      112236799999999988887779999999654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.61  E-value=0.0034  Score=71.44  Aligned_cols=79  Identities=13%  Similarity=0.212  Sum_probs=52.6

Q ss_pred             CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCE-EEEEEcCCCCE
Q 005235          559 KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDI-TNVAFHRSYPL  637 (707)
Q Consensus       559 dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I-~~vafspdg~l  637 (707)
                      .+.|..||+.+++.+.+...+. .+.+-.+...|.++++|+.||.|+.||.+++ +.+-.++.....+ .-+.|..+|++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG-~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCC-CEEEEecCCCCcccCceEEEECCEE
Confidence            4789999999999887776442 2211112224678888999999999999988 5566665433221 23566677774


Q ss_pred             EE
Q 005235          638 FA  639 (707)
Q Consensus       638 la  639 (707)
                      ++
T Consensus       543 Yv  544 (582)
T 1flg_A          543 YL  544 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.59  E-value=0.0024  Score=73.71  Aligned_cols=199  Identities=11%  Similarity=0.074  Sum_probs=110.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe--C-----CeEEEE
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST--K-----KNIRVY  565 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s--d-----g~I~iw  565 (707)
                      .....++++..+|..+++|+.++  ..+.+||..+...... .+.....-.++++.++++++++|+  +     ..+.+|
T Consensus       242 ~~~~~~~~~~~~g~lyv~GG~~~--~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y  319 (656)
T 1k3i_A          242 DMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY  319 (656)
T ss_dssp             CCSSCEEEECTTSCEEEECSSST--TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred             CCccccccCCCCCCEEEeCCCCC--CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEe
Confidence            33445678888999999998654  3799999987754311 122222334566778899888876  2     579999


Q ss_pred             ECCCCeEEEEEeCC-CCCe----EEEEEcCCCCEEEEEECCC---------cEEEEECCCCCcceEEeecCC--------
Q 005235          566 DLLKQRLIKKLETG-LKEV----SSIAIHPAGDNLIVGSREG---------KLCWFDMDLSSKPYRVLKCHP--------  623 (707)
Q Consensus       566 Dl~~~~~~~~l~~~-~~~I----~sl~~spdg~~L~sGs~Dg---------~I~vwDl~~~~~~~~~l~~h~--------  623 (707)
                      |+.+++-.. +... ..+.    ....+..++..++.|+.+|         .+.+||..+.. ....+..+.        
T Consensus       320 d~~t~~W~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~-w~~~~~~~~~~~~~~~~  397 (656)
T 1k3i_A          320 SPSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGVAPD  397 (656)
T ss_dssp             ETTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC-EEEEEEECEETTEECCC
T ss_pred             CCCCCccee-CCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc-eeecCCccccccccCCC
Confidence            998876432 2100 0000    0012234555566665554         46788887653 222222111        


Q ss_pred             -CCEEEEEEcC-CCCEEEEEeCCC-----------cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCC
Q 005235          624 -KDITNVAFHR-SYPLFASCSDDC-----------TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQ  690 (707)
Q Consensus       624 -~~I~~vafsp-dg~llaSgs~Dg-----------~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg  690 (707)
                       ..-.++.|.. ++.+++.|+.++           .|.+|      |..++.-    ..+.+..-...+.-.+++..|++
T Consensus       398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~y------d~~~~~W----~~~~~~~mp~~R~~~~~~~l~~g  467 (656)
T 1k3i_A          398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLG------EPGTSPN----TVFASNGLYFARTFHTSVVLPDG  467 (656)
T ss_dssp             CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECC------STTSCCE----EEECTTCCSSCCBSCEEEECTTS
T ss_pred             CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcC------CCCCCCe----eEEccCCCCCCcccCCeEECCCC
Confidence             1234555644 677888887532           45666      3333221    11110000001113455677899


Q ss_pred             CEEEEEeCC-----------CcEEEEe
Q 005235          691 PWLFTAGAD-----------SVIRLYC  706 (707)
Q Consensus       691 ~~L~s~g~D-----------g~IrlWd  706 (707)
                      .+++.||.+           ..+.+||
T Consensus       468 ~i~v~GG~~~~~~~~~~~~~~~v~~yd  494 (656)
T 1k3i_A          468 STFITGGQRRGIPFEDSTPVFTPEIYV  494 (656)
T ss_dssp             CEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred             CEEEECCcccCcCcCCCCcccceEEEc
Confidence            999999865           4577776

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.57  E-value=0.042  Score=64.58  Aligned_cols=161  Identities=9%  Similarity=-0.020  Sum_probs=104.7

Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc---eeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeE
Q 005235          489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL---SHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNI  562 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~---~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I  562 (707)
                      .+......+..|+|++.+..|+.+...  .+.|+.+++....   .....+ .....+..|++.+.+..|+++.  .+.|
T Consensus       418 ~l~~~~~~~~gl~~d~~~~~lY~sD~~--~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I  495 (791)
T 3m0c_C          418 SLIPNLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV  495 (791)
T ss_dssp             EEECSCSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             eeecCCCceEEEeecccCCeeEEeecc--ceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeE
Confidence            344455678899999866666555443  2488888887632   110233 3456678999999888788776  6899


Q ss_pred             EEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C-CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235          563 RVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-E-GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS  640 (707)
Q Consensus       563 ~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-D-g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS  640 (707)
                      .+.++........+.........|+++|.+.+|+.... . ++|.+.+++.. .....+...-...+.|++.+.+..|+.
T Consensus       496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEE
Confidence            99999865443334445566899999998767666553 2 67999998743 322333333356889999987665555


Q ss_pred             E-eCCCcEEEEec
Q 005235          641 C-SDDCTAYVFHG  652 (707)
Q Consensus       641 g-s~Dg~I~Vwd~  652 (707)
                      + +....|..+++
T Consensus       575 aD~~~~~I~~~d~  587 (791)
T 3m0c_C          575 VDSKLHSISSIDV  587 (791)
T ss_dssp             EETTTTEEEEEET
T ss_pred             EeCCCCcEEEEec
Confidence            4 44567888753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.51  E-value=0.009  Score=60.32  Aligned_cols=166  Identities=13%  Similarity=0.116  Sum_probs=104.3

Q ss_pred             eee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 005235          534 IPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM  609 (707)
Q Consensus       534 ~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl  609 (707)
                      .++ +....+..++|+|++..|++.+  ++.|..+|+. ++.++++. .+......|++.++|.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            355 5556899999999887777655  6889999998 88888775 33356889999988877676556788999998


Q ss_pred             CCCCc--ceEEee------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC---CCCCCC
Q 005235          610 DLSSK--PYRVLK------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG---HTSSNG  678 (707)
Q Consensus       610 ~~~~~--~~~~l~------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g---h~~~~~  678 (707)
                      .....  ......      ..+.....++|+|.+..|.++...+...||.+.   .+.....   +..+..   ......
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~---g~~~~~~---l~i~~~~~~~~~~~~  172 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN---GLLSSNE---LHISKDKALQRQFTL  172 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE---STTCSSC---CEEEECHHHHHTCCS
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc---ccccCCc---eeeecchhhcccccc
Confidence            76542  122222      123456899999998766666666555666443   1111111   222211   000011


Q ss_pred             CCeeEEEEcCCCCEEEEEe-CCCcEEEEe
Q 005235          679 RGVMDCKFHPRQPWLFTAG-ADSVIRLYC  706 (707)
Q Consensus       679 ~gV~~l~fspdg~~L~s~g-~Dg~IrlWd  706 (707)
                      ..+.+++++|....|+..+ ....|..+|
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d  201 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVT  201 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEc
Confidence            2378999999766554444 444454444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.42  E-value=0.012  Score=61.40  Aligned_cols=161  Identities=16%  Similarity=0.219  Sum_probs=106.7

Q ss_pred             cCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCC-----C--CCeEEEEE---cCCCCEEEEEEC-----
Q 005235          538 LHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETG-----L--KEVSSIAI---HPAGDNLIVGSR-----  600 (707)
Q Consensus       538 ~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~-----~--~~I~sl~~---spdg~~L~sGs~-----  600 (707)
                      ...-..++.|++....|.+++  .++|..||...+........+     .  ..++.|.|   .|+|+++++...     
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            344556889999777787777  899999999866544332222     1  13689999   688878776442     


Q ss_pred             --------CCcEEEEECC---CCCcceEEee--cC-----------CCCEEEEEEcCCCCEEEEEeCC-CcEEEEecccc
Q 005235          601 --------EGKLCWFDMD---LSSKPYRVLK--CH-----------PKDITNVAFHRSYPLFASCSDD-CTAYVFHGMVY  655 (707)
Q Consensus       601 --------Dg~I~vwDl~---~~~~~~~~l~--~h-----------~~~I~~vafspdg~llaSgs~D-g~I~Vwd~~~~  655 (707)
                              +..|..||+.   ++ +.+....  ..           ......++..++|+..++++.- +.|..++    
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~----  165 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS----  165 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC----
T ss_pred             ccccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe----
Confidence                    6779999998   66 3333222  11           1247899999999999988877 7766663    


Q ss_pred             cCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          656 SDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       656 ~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                        ...... .+.. +.........|.+.|+++|+|..|+.....|.|..+|+
T Consensus       166 --pdG~~~-~~~~-~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          166 --ADGKTV-STFA-WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             --TTSCCE-EEEE-ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred             --CCCCEE-eeee-ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence              222211 1111 11111111245889999999999988877998888774

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.42  E-value=0.11  Score=59.27  Aligned_cols=201  Identities=7%  Similarity=-0.047  Sum_probs=114.7

Q ss_pred             CCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeE-EEEEec-CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCC
Q 005235          373 PKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRC-LRVLEI-GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGL  449 (707)
Q Consensus       373 p~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~-l~~l~~-~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~  449 (707)
                      +.+..|..+...+..+.++++-...+.|..+++..... ...+.. -.....|++.+.+. .|+.+. ..+.|.+.++..
T Consensus        37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~-~ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE-KLYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTS
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC-EEEEEeCCCCEEEEEECCC
Confidence            34444444444445555555655667788888765432 222222 35788899988653 344443 456777776543


Q ss_pred             CCchhcccccceeeecccccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC
Q 005235          450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK  528 (707)
Q Consensus       450 ~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~  528 (707)
                      .                                   ....+. ..-.....|++.|.+.+|..+.... ...|...++..
T Consensus       116 ~-----------------------------------~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~-~~~I~r~~~dG  159 (619)
T 3s94_A          116 S-----------------------------------LRKVLFWQELDQPRAIALDPSSGFMYWTDWGE-VPKIERAGMDG  159 (619)
T ss_dssp             C-----------------------------------SCEEEECSSCSCCCCEEEETTTTEEEEEECSS-SCEEEEEETTS
T ss_pred             C-----------------------------------CEEEEEeCCCCCCceEEEecCCCeEEEeccCC-CCEEEEEECCC
Confidence            2                                   111111 2334577899999766665554321 23777777776


Q ss_pred             Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 005235          529 KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLC  605 (707)
Q Consensus       529 ~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~  605 (707)
                      .... ..+ ..-.....+++++++..|+++.  .+.|..+|+........+.+......+|++..+ ..+++-...+.|.
T Consensus       160 ~~~~-~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~  237 (619)
T 3s94_A          160 SSRF-IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSIL  237 (619)
T ss_dssp             CSCE-EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEE
T ss_pred             CceE-EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEE
Confidence            5443 233 3445788999999888888876  588999998754333222222233456777654 3444445567899


Q ss_pred             EEECCCC
Q 005235          606 WFDMDLS  612 (707)
Q Consensus       606 vwDl~~~  612 (707)
                      ..|..++
T Consensus       238 ~~d~~tg  244 (619)
T 3s94_A          238 ACNKYTG  244 (619)
T ss_dssp             EEESSSC
T ss_pred             EEECCCC
Confidence            9998765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.39  E-value=0.042  Score=57.33  Aligned_cols=150  Identities=10%  Similarity=0.102  Sum_probs=94.0

Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 005235          493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ  570 (707)
Q Consensus       493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~  570 (707)
                      +...+..+++.+++.+++++....   .++-.|-. +..- ..+  .....+..+++.+++.+++++.+|.+++.+...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~---~~~S~d~g-G~tW-~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGS---FYSTWEPG-QTAW-EPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS  235 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSS---EEEEECTT-CSSC-EEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE
T ss_pred             CCcceEEEEEcCCCcEEEEECCCc---EEEEeCCC-CCce-eECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCC
Confidence            445688899999988887664322   33333321 2221 222  4456788999999998877776888887753334


Q ss_pred             eEEEEEeC----CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec---CCCCEEEEEEcCCCCEEEEEeC
Q 005235          571 RLIKKLET----GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC---HPKDITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       571 ~~~~~l~~----~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~---h~~~I~~vafspdg~llaSgs~  643 (707)
                      +.-..+..    ....+.++++.+++..+++|. +|.| ++..+.+ .-...+..   +...+.+|.|.+++. +++++.
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~  311 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQ  311 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEETTE-EEEECS
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECCCc-eEEEcC
Confidence            43333322    123588999998887777665 6666 4445544 44554442   245678899986554 556678


Q ss_pred             CCcEEEEe
Q 005235          644 DCTAYVFH  651 (707)
Q Consensus       644 Dg~I~Vwd  651 (707)
                      +|.|.-++
T Consensus       312 ~G~i~~~~  319 (327)
T 2xbg_A          312 KGILLRYV  319 (327)
T ss_dssp             TTEEEEEC
T ss_pred             CceEEEEc
Confidence            89877763

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.38  E-value=0.048  Score=57.66  Aligned_cols=236  Identities=11%  Similarity=0.025  Sum_probs=124.4

Q ss_pred             CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235          418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV  497 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V  497 (707)
                      ....+|+|.|+|  .++++...+.|.+++  .+...      .                  +-+..     .........
T Consensus        31 ~~P~~ia~~pdG--~l~V~e~~g~I~~i~--~g~~~------~------------------~~~~~-----v~~~g~~~p   77 (352)
T 2ism_A           31 EVPWALAFLPDG--GMLIAERPGRIRLFR--EGRLS------T------------------YAELS-----VYHRGESGL   77 (352)
T ss_dssp             SCEEEEEECTTS--CEEEEETTTEEEEEE--TTEEE------E------------------EEECC-----CCCSTTCSE
T ss_pred             CCceEEEEcCCC--eEEEEeCCCeEEEEE--CCCcc------E------------------eecce-----EeecCCCCc
Confidence            456899999999  588888889999887  22110      0                  00000     011123467


Q ss_pred             EEEEEcCC---CCEEEEEeCCCC---ccEEEEEECCCCcee-eee----ec--c--CCCeEEEEEeCCCCEEEEEeC---
Q 005235          498 SSVEWHRR---GDYLSTVMPAGE---SRAIFMHQLSKKLSH-RIP----FK--L--HGLPVSSVFHPTRSIFFVSTK---  559 (707)
Q Consensus       498 ~~v~~sp~---g~~lat~s~dg~---~~~V~Iwdl~~~~~~-~~~----~~--~--~~~V~~v~fspd~~~l~v~sd---  559 (707)
                      ..|+|+|+   +.+|.++.....   ...|..+++...... ...    +.  .  ......++|.|+|.+.++.++   
T Consensus        78 ~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~  157 (352)
T 2ism_A           78 LGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYE  157 (352)
T ss_dssp             EEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTC
T ss_pred             eeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCC
Confidence            88999998   555444432110   137778887643211 011    21  1  123468999999976555322   


Q ss_pred             -----------CeEEEEECCCC------------eEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCc--------EEEE
Q 005235          560 -----------KNIRVYDLLKQ------------RLIKKLETGLKEVSSIAIHP-AGDNLIVGSREGK--------LCWF  607 (707)
Q Consensus       560 -----------g~I~iwDl~~~------------~~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg~--------I~vw  607 (707)
                                 +.|.-++....            .....+..+......++|+| +|.++++-.....        |.+.
T Consensus       158 ~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i  237 (352)
T 2ism_A          158 RELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI  237 (352)
T ss_dssp             GGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE
T ss_pred             CccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe
Confidence                       45666665430            01111222224467889999 6665555433333        3333


Q ss_pred             ECCC---------------CCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCc--ccceEEe
Q 005235          608 DMDL---------------SSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPL--IVPLEIL  670 (707)
Q Consensus       608 Dl~~---------------~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~--~~pl~~l  670 (707)
                      ....               ...+...+. +......++| .+|.++++.-..+.|...+.....     ..  ......+
T Consensus       238 ~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~-----~~~~~~~~~~~  310 (352)
T 2ism_A          238 VPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGER-----GRWRVLRVETA  310 (352)
T ss_dssp             CTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEET-----TEEEEEEEEEE
T ss_pred             ccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCC-----cceeecchhee
Confidence            2111               012344443 2345677888 567777766666777776443111     10  0001222


Q ss_pred             eCCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235          671 RGHTSSNGRGVMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       671 ~gh~~~~~~gV~~l~fspdg~~L~s~g  697 (707)
                      -.-...    +.++++.|||.++++..
T Consensus       311 ~~~~~r----p~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          311 LSGFGR----LREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EESSCC----EEEEEECTTSCEEEEEC
T ss_pred             cccCCC----eeEEEECCCCcEEEEEe
Confidence            111122    89999999998776654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.37  E-value=0.00075  Score=78.64  Aligned_cols=174  Identities=9%  Similarity=-0.028  Sum_probs=103.2

Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC----Cceeeeee-ccCCCeEEEEEeC
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK----KLSHRIPF-KLHGLPVSSVFHP  549 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~----~~~~~~~~-~~~~~V~~v~fsp  549 (707)
                      ..|+..++.+.....+......+..|+|++.+..|+.+...  .+.|..+++.+    .... ..+ .....+..+++.+
T Consensus       386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~--~~~I~~~~~~g~~~~~~~~-~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYD-TVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTT--TTSBEEEESCCCCC-CCCC-CBCCSCC--CCCEECCC
T ss_pred             cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecC--CCeEEEEecCCCCCCcceE-EEEeCCCCCcceEEEEe
Confidence            34444554443332233334567789999877777665543  24888888875    2221 222 2233456788887


Q ss_pred             CCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-C-CcEEEEECCCCCcceEEeecCCCC
Q 005235          550 TRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-E-GKLCWFDMDLSSKPYRVLKCHPKD  625 (707)
Q Consensus       550 d~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~-D-g~I~vwDl~~~~~~~~~l~~h~~~  625 (707)
                      .+..|+++.  .+.|.++++........+.........|+++|.+.+|+.... . ++|.+++++.. .....+...-..
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~  541 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQW  541 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSS
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCC
Confidence            666666654  688999998755443333333345678999997666555443 2 68888888643 222222222234


Q ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEec
Q 005235          626 ITNVAFHRSYP-LFASCSDDCTAYVFHG  652 (707)
Q Consensus       626 I~~vafspdg~-llaSgs~Dg~I~Vwd~  652 (707)
                      -+.|+|+|++. ++++-+..+.|.++++
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~  569 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDV  569 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence            57899998754 5556566778999854

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.33  E-value=0.075  Score=60.87  Aligned_cols=196  Identities=6%  Similarity=-0.073  Sum_probs=118.6

Q ss_pred             CCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchh
Q 005235          377 SRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEE  454 (707)
Q Consensus       377 ~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~  454 (707)
                      .+..+..-+..+.++++-..++.|..+++..+.....+.. ......|++.+.+. .|+.+. ..+.|.+.++...    
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~-~LY~tD~~~~~I~v~~~dG~----  112 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK-NLYWADTGTNRIEVSKLDGQ----  112 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTST----
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC-EEEEEECCCCEEEEEecCCC----
Confidence            3333433444555666666778888888765433333332 24566777776553 344433 3456666664322    


Q ss_pred             cccccceeeecccccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235          455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~  533 (707)
                                                     ....+. ..-.....|++.|...+|..+... ....|...++...... 
T Consensus       113 -------------------------------~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~-  159 (628)
T 4a0p_A          113 -------------------------------HRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERT-  159 (628)
T ss_dssp             -------------------------------TCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCE-
T ss_pred             -------------------------------cEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceE-
Confidence                                           111111 233457899999866666555532 1348888888766543 


Q ss_pred             eeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235          534 IPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       534 ~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~  611 (707)
                      ..+..-.....+++++++..|+.+.  .+.|..+|+..... ..+.........|++.. +..+++-...+.|...|..+
T Consensus       160 ~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~t  237 (628)
T 4a0p_A          160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTS  237 (628)
T ss_dssp             EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred             EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCC
Confidence            3335556788999999988888886  58899999975433 33443445567888864 44444444578899999766


Q ss_pred             C
Q 005235          612 S  612 (707)
Q Consensus       612 ~  612 (707)
                      +
T Consensus       238 g  238 (628)
T 4a0p_A          238 G  238 (628)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.29  E-value=0.21  Score=61.15  Aligned_cols=311  Identities=12%  Similarity=0.098  Sum_probs=163.9

Q ss_pred             CCCcccCCCC--cEEEEEeCCCcEEEEeCCC--CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCC-ch
Q 005235          379 KDLKPYPVAC--YLEYKGSTDGTVRIWEVES--GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN-EE  453 (707)
Q Consensus       379 ~~l~pfp~~~--~~l~sgs~DgtVrIWd~~t--g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~-~~  453 (707)
                      ....+|++..  .-++ +..++.++|..+.+  .-.++++.....+..++++|... .++++..+.  ..++..... ..
T Consensus       695 ~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~-~~~v~~~~~--~~~~~~~~~~~~  770 (1158)
T 3ei3_A          695 NYMCPLNSDGYPDSLA-LANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQ-CFGVLSSRI--EVQDTSGGTTAL  770 (1158)
T ss_dssp             CEEEEECCSSSTTEEE-EECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGT-EEEEEEEEE--EEECSSSSEEES
T ss_pred             ceEeccCcccCCCcEE-EEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCC-EEEEEEEec--cccccccccchh
Confidence            3455676532  2233 23456699988764  33556677789999999999874 344433322  112211100 00


Q ss_pred             h-----cccccc------------eeeecccccccCCCCcEEEEecCCccceE--EeccCCCeEEEE---EcC-CCCEEE
Q 005235          454 E-----QRRVKD------------LLHVETPTAPDDNMASIVSWLQHDKLDGI--RLRHFKMVSSVE---WHR-RGDYLS  510 (707)
Q Consensus       454 ~-----~~~~~~------------v~~~~~~~~~~~~d~~i~iW~~~~~~~~~--~~~h~~~V~~v~---~sp-~g~~la  510 (707)
                      .     ......            .-...|.  .......+++.+..+.....  .......+.+++   |.. ...+|+
T Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lv  848 (1158)
T 3ei3_A          771 RPSASTQALSSSVSSSKLFSSSTAPHETSFG--EEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFI  848 (1158)
T ss_dssp             SCCHHHHCSEEEECCCCCC----------CC--CEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEE
T ss_pred             hhhhhhhhhhhcccccccccccccCchhhcC--CceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEE
Confidence            0     000000            0000000  00012345555554333221  222233444444   332 246888


Q ss_pred             EEeC------C-CCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEE-EEeCCC
Q 005235          511 TVMP------A-GESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIK-KLETGL  580 (707)
Q Consensus       511 t~s~------d-g~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~-~l~~~~  580 (707)
                      +|..      + ...+.|.++++..++.. ...  ..++.|++++--. | +|++|-.+.|++|++...+.++ ..... 
T Consensus       849 VGTa~~~~~e~~~~~Gri~vf~v~~~kL~-lv~~~~v~g~v~al~~~~-g-~Lla~ig~~l~vy~l~~~~~L~~~~~~~-  924 (1158)
T 3ei3_A          849 VGTAMVYPEEAEPKQGRIVVFQYSDGKLQ-TVAEKEVKGAVYSMVEFN-G-KLLASINSTVRLYEWTTEKELRTECNHY-  924 (1158)
T ss_dssp             EEEEECCTTCSSCCCEEEEEEEEETTEEE-EEEEEEESSCEEEEEEET-T-EEEEEETTEEEEEEECTTSCEEEEEEEC-
T ss_pred             EEeeecCCCCCCCCceEEEEEEEECCEEE-EEEEEEcCCcCEEEeeeC-C-EEEEEcCCEEEEEECCCCceEEEEeecc-
Confidence            7762      1 13568999999755433 222  6678899887442 3 7777778999999998765333 11111 


Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccC-
Q 005235          581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK--CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSD-  657 (707)
Q Consensus       581 ~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~D-  657 (707)
                      ..|..+.+...|+++++|..-..|.++-.+.....+..+.  .+...++++.|--+ ..++.+..+|.|.++....... 
T Consensus       925 ~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~ 1003 (1158)
T 3ei3_A          925 NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATT 1003 (1158)
T ss_dssp             CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCS
T ss_pred             ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCC
Confidence            1233333333588999999888887765543323333333  34567888888654 4677788999999986542110 


Q ss_pred             CCCCCcccceEEeeCCCCCCCCCeeEEE---EcCC---------CCEEEEEeCCCcEEEE
Q 005235          658 LNQNPLIVPLEILRGHTSSNGRGVMDCK---FHPR---------QPWLFTAGADSVIRLY  705 (707)
Q Consensus       658 l~~~~~~~pl~~l~gh~~~~~~gV~~l~---fspd---------g~~L~s~g~Dg~IrlW  705 (707)
                      ...+........+  |.+.   -|+++.   +.+.         ...++.++.+|.|.+.
T Consensus      1004 ~~~~~~L~~~~~f--hlG~---~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A         1004 DEERQHLQEVGLF--HLGE---FVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp             TTGGGBEEEEEEE--ECSS---CEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred             ccccceeeeEEEE--eCCC---cEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence            0011121222222  2221   166665   3332         2357888899998764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.28  E-value=0.065  Score=56.70  Aligned_cols=238  Identities=8%  Similarity=-0.049  Sum_probs=126.0

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      -....+|+|.|+|  .|+++...+.|.+++. .+. .      .+                  -.+.     ........
T Consensus        28 l~~P~~ia~~pdG--~l~V~e~~g~I~~~d~-~G~-~------~~------------------~~~~-----v~~~g~~g   74 (354)
T 3a9g_A           28 LEVPWSIAPLGGG--RYLVTERPGRLVLISP-SGK-K------LV------------------ASFD-----VANVGEAG   74 (354)
T ss_dssp             CSCEEEEEEEETT--EEEEEETTTEEEEECS-SCE-E------EE------------------EECC-----CCCSTTCS
T ss_pred             CCCCeEEEEcCCC--eEEEEeCCCEEEEEeC-CCc-e------Ee------------------eccc-----eeecCCCc
Confidence            3567899999999  5888888899988862 221 0      00                  0000     00112345


Q ss_pred             eEEEEEcCC---CCEEEEEeCC--C---CccEEEEEECCCCc--e--eeee---ec--cCCCeEEEEEeCCCCEEEEEeC
Q 005235          497 VSSVEWHRR---GDYLSTVMPA--G---ESRAIFMHQLSKKL--S--HRIP---FK--LHGLPVSSVFHPTRSIFFVSTK  559 (707)
Q Consensus       497 V~~v~~sp~---g~~lat~s~d--g---~~~~V~Iwdl~~~~--~--~~~~---~~--~~~~V~~v~fspd~~~l~v~sd  559 (707)
                      ...|+|+|+   +.+|.++...  .   ....|..+++....  .  ....   +.  .......++|.|+|.++++.++
T Consensus        75 ~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~  154 (354)
T 3a9g_A           75 LLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD  154 (354)
T ss_dssp             EEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred             eeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence            788999997   4444443321  1   01367777776541  1  1011   21  1223567999999986665332


Q ss_pred             --------------CeEEEEECCCCe-------EEEEEeCCCCCeEEEEEcC-CCCEEEEEECCC---cEEEEECCC---
Q 005235          560 --------------KNIRVYDLLKQR-------LIKKLETGLKEVSSIAIHP-AGDNLIVGSREG---KLCWFDMDL---  611 (707)
Q Consensus       560 --------------g~I~iwDl~~~~-------~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg---~I~vwDl~~---  611 (707)
                                    +.|..++....-       ....+..+......|+|+| +|.++++-...+   .|.+.....   
T Consensus       155 ~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyG  234 (354)
T 3a9g_A          155 AADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYG  234 (354)
T ss_dssp             TTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCC
T ss_pred             CCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCC
Confidence                          456666654210       0111222224467899999 666555433222   243332110   


Q ss_pred             ------------CCcceEEeecCCCCEEEEEEc-------CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe-e
Q 005235          612 ------------SSKPYRVLKCHPKDITNVAFH-------RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL-R  671 (707)
Q Consensus       612 ------------~~~~~~~l~~h~~~I~~vafs-------pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l-~  671 (707)
                                  ...++..+.........++|.       .+|.++++.-..+.|...++...     ... .....+ .
T Consensus       235 wp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~-----g~~-~~~~~~~~  308 (354)
T 3a9g_A          235 WPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN-----MEV-RKISTFFK  308 (354)
T ss_dssp             TTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG-----GCE-EEEEEECT
T ss_pred             CCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC-----Ccc-cceeeecc
Confidence                        012334441123467888883       56777777666777877754311     111 111222 2


Q ss_pred             CCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235          672 GHTSSNGRGVMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       672 gh~~~~~~gV~~l~fspdg~~L~s~g  697 (707)
                      +-..    .+.++++.|||.+.++..
T Consensus       309 ~~~~----rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          309 NVFG----RLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TTSC----CEEEEEECTTSCEEEEEC
T ss_pred             CCCC----CeeEEEECCCCcEEEEEe
Confidence            2122    389999999998766664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.18  E-value=0.19  Score=57.44  Aligned_cols=192  Identities=11%  Similarity=-0.028  Sum_probs=120.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR  571 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~  571 (707)
                      ..+..|+|++.+..|..+...  .+.|..+++...... ..+ .....+..+++.+.+..|+.+.  .+.|.+.++....
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~--~~~I~r~~~~g~~~~-~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~  113 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDIS--LKTISRAFMNGSALE-HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH  113 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCE-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred             CceEEEEEECCCCEEEEEECC--CCeEEEEECCCCCcE-EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence            467899999977776665543  248999998765543 333 3335678999998877777765  5889999987543


Q ss_pred             EEEEEeCCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEE
Q 005235          572 LIKKLETGLKEVSSIAIHPAGDNLIVGSR--EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC-SDDCTAY  648 (707)
Q Consensus       572 ~~~~l~~~~~~I~sl~~spdg~~L~sGs~--Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg-s~Dg~I~  648 (707)
                      ....+.........|+++|...+|.....  .++|...+++.. . ...+...-...+.|++++++..|..+ +..+.|.
T Consensus       114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~  191 (628)
T 4a0p_A          114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-E-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIE  191 (628)
T ss_dssp             CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-S-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-c-eEEEECCCCCcceEEEccccCEEEEEECCCCEEE
Confidence            22222244456799999996666666553  568888888744 2 33333345667899999976655544 4567888


Q ss_pred             EEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          649 VFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       649 Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      .++..      ....    ..+......    ..++++.. +...+|-...+.|...|
T Consensus       192 ~~d~d------G~~~----~v~~~~l~~----P~glav~~-~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          192 SSNML------GLNR----EVIADDLPH----PFGLTQYQ-DYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             EEETT------SCSC----EEEEECCSC----EEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             EEcCC------CCce----EEeeccCCC----ceEEEEEC-CEEEEecCCCCEEEEEE
Confidence            88542      2221    122222222    56777754 33334444456666544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.18  E-value=0.22  Score=52.41  Aligned_cols=240  Identities=9%  Similarity=-0.025  Sum_probs=126.0

Q ss_pred             CCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFK  495 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~  495 (707)
                      -...+.|+|.|+|  .++++.. .+.|++++...+....                        +-.+.    .+......
T Consensus        31 L~~P~~ia~~pdG--~llVter~~G~I~~v~~~~g~~~~------------------------v~~~~----~v~~~g~~   80 (347)
T 3das_A           31 LNSPWGLAPLPGG--DLLVSSRDEATITRVDAKTGRKTE------------------------LGEVP----GVSPSGEG   80 (347)
T ss_dssp             CSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEE------------------------EEECT----TCCCBTTB
T ss_pred             CCCceEEEEcCCC--cEEEEEecCCEEEEEECCCCcEee------------------------ecccC----ceeecCCC
Confidence            4667899999999  5777777 8899888754432110                        00000    01112345


Q ss_pred             CeEEEEEcCC---CCEE-EEEeCCCCccEEEEEECCCCc-----e--eeee---e--ccCCCeEEEEEeCCCCEEEEEeC
Q 005235          496 MVSSVEWHRR---GDYL-STVMPAGESRAIFMHQLSKKL-----S--HRIP---F--KLHGLPVSSVFHPTRSIFFVSTK  559 (707)
Q Consensus       496 ~V~~v~~sp~---g~~l-at~s~dg~~~~V~Iwdl~~~~-----~--~~~~---~--~~~~~V~~v~fspd~~~l~v~sd  559 (707)
                      ....|+|+|+   +.+| ++-+... ...|.-+.+....     .  ....   +  ........++|.|+|.+.++.++
T Consensus        81 GllGia~~Pdf~~~g~lYv~yt~~~-~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A           81 GLLGIALSPDYASDHMVYAYFTSAS-DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             SEEEEEECTTHHHHCEEEEEEECSS-SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred             CceeeEeccccccCCEEEEEEecCC-CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence            6789999985   3344 3322211 2366666665421     0  1011   2  11224467999999987666432


Q ss_pred             --------------CeEEEEECCCCe-------EEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCC----
Q 005235          560 --------------KNIRVYDLLKQR-------LIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSS----  613 (707)
Q Consensus       560 --------------g~I~iwDl~~~~-------~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~----  613 (707)
                                    +.|.-++....-       ....+..+......|+|+|+|.+.++-. .++.=.|.-+..+.    
T Consensus       160 ~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGw  239 (347)
T 3das_A          160 SGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGW  239 (347)
T ss_dssp             TTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCT
T ss_pred             CCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecC
Confidence                          455555554220       0112222334567899999887665532 22222222222211    


Q ss_pred             -------------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCC
Q 005235          614 -------------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRG  680 (707)
Q Consensus       614 -------------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~g  680 (707)
                                   .|+..+..+..+...++|. ++.+|+..-..+.|....+...     .....+...+.+....    
T Consensus       240 P~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~-----~~~~~~e~~l~~~~gR----  309 (347)
T 3das_A          240 PEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT-----AAAADPQAFLEGEYGR----  309 (347)
T ss_dssp             TTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT-----EESSCCEEESTTTSSC----
T ss_pred             CcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCC-----ceecceEEeecCCCCC----
Confidence                         2344444333466778886 4666666655566655533211     0011122334443333    


Q ss_pred             eeEEEEcCCCCEEEEEe
Q 005235          681 VMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       681 V~~l~fspdg~~L~s~g  697 (707)
                      +.+|+..|||.++++..
T Consensus       310 ~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          310 LRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEEEEETTEEEEEEC
T ss_pred             ccEEEECCCCcEEEEEc
Confidence            99999999998766654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.17  E-value=0.067  Score=56.21  Aligned_cols=188  Identities=13%  Similarity=0.206  Sum_probs=113.2

Q ss_pred             CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCC----CCE--EEEEe--C---CeEEEEEC--CCCe
Q 005235          505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPT----RSI--FFVST--K---KNIRVYDL--LKQR  571 (707)
Q Consensus       505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd----~~~--l~v~s--d---g~I~iwDl--~~~~  571 (707)
                      ....++.....+   .+.+||+ .++.. ..+.. +.++.|..-|.    +..  +++++  +   ++|++|++  .++.
T Consensus        39 ~~s~ii~t~k~~---gL~Vydl-~G~~l-~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           39 QNSKLITTNKKS---GLVVYSL-DGKML-HSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             GGCEEEEEETTT---EEEEEET-TSCEE-EEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             CccEEEEEcCCC---CEEEEcC-CCcEE-EEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            344555555555   8999999 45444 44432 56777777663    221  33433  3   68999977  3443


Q ss_pred             EEEEEe-------CCCCCeEEEEE--cCC-CC-EEEEEECCCcEEEEECCC---C---CcceEEeecCCCCEEEEEEcCC
Q 005235          572 LIKKLE-------TGLKEVSSIAI--HPA-GD-NLIVGSREGKLCWFDMDL---S---SKPYRVLKCHPKDITNVAFHRS  634 (707)
Q Consensus       572 ~~~~l~-------~~~~~I~sl~~--spd-g~-~L~sGs~Dg~I~vwDl~~---~---~~~~~~l~~h~~~I~~vafspd  634 (707)
                       +..+.       .....+..+++  +|. |. ++++...+|.+..|++..   +   .+.+++|.. ...+..|+..+.
T Consensus       113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~  190 (355)
T 3amr_A          113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE  190 (355)
T ss_dssp             -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred             -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence             44442       11145667777  774 43 688888899999998842   1   245666664 457889999998


Q ss_pred             CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee-CCCCCCCCCeeEEEE--cCCCC-EEEEEe-CCCcEEEEeC
Q 005235          635 YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTSSNGRGVMDCKF--HPRQP-WLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       635 g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~-gh~~~~~~gV~~l~f--spdg~-~L~s~g-~Dg~IrlWdl  707 (707)
                      ...|+.+-.+.-|..++..    .........+..+. ++-..   .+..|+.  .+++. ||++++ .+++..+|+.
T Consensus       191 ~g~Lyv~eEd~GIw~~da~----p~~~~~~~~v~~~~~g~l~a---DvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAE----PDGGSNGTVIDRADGRHLTR---DIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             TTEEEEEETTTEEEEEECS----TTSCSCCEEEEEBSSSSBCS---CEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             CCeEEEecccceEEEEeCC----cCCCCCceEEEEecCCcccc---CcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            8888889888655555432    11111112233332 22221   2777777  56666 666555 6778888874

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.08  E-value=0.031  Score=60.09  Aligned_cols=150  Identities=15%  Similarity=0.194  Sum_probs=100.7

Q ss_pred             EEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCC----CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC---c----
Q 005235          546 VFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETG----LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS---K----  614 (707)
Q Consensus       546 ~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~----~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~---~----  614 (707)
                      ....++..++++.++.||..++......+.+...    -..|..+..+|+|++||..+. ..|.|..+..+.   .    
T Consensus        27 ~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           27 FSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHH
T ss_pred             EEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccc
Confidence            4456788899999999999998855445555543    235888999999999998864 578888886321   1    


Q ss_pred             --c--eEEeec------CCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCC-----C
Q 005235          615 --P--YRVLKC------HPKDITNVAFHRS---YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS-----S  676 (707)
Q Consensus       615 --~--~~~l~~------h~~~I~~vafspd---g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~-----~  676 (707)
                        +  .+.+.-      ...+|..+.|||-   +..|++-..|++|++||+....+   .    |. .|.....     .
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~---~----P~-~L~k~~~~fg~d~  177 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE---K----PI-VLNKPNNSFGLDA  177 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS---C----CE-EESCCCSEEESCS
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC---C----Cc-chhccccccCCCc
Confidence              1  122322      2467999999995   45899999999999998764211   1    12 2211100     0


Q ss_pred             CCCCeeEEEEcCCCCEEEEEe--CCCcEEE
Q 005235          677 NGRGVMDCKFHPRQPWLFTAG--ADSVIRL  704 (707)
Q Consensus       677 ~~~gV~~l~fspdg~~L~s~g--~Dg~Irl  704 (707)
                      ...-|.+++|.+++-.|...+  ..|-|.-
T Consensus       178 ~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          178 RVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             SCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             ccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            012389999999877666644  7787754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.07  E-value=0.0011  Score=77.12  Aligned_cols=218  Identities=8%  Similarity=-0.058  Sum_probs=124.9

Q ss_pred             CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCC----CCc-hhc-ccccce--eeeccc
Q 005235          397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGL----GNE-EEQ-RRVKDL--LHVETP  467 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~----~~~-~~~-~~~~~v--~~~~~~  467 (707)
                      .+.|++.++.++.....+.....+.+|+|.+.+. .|+.+. ..+.|..+++..    ... .+. ......  +++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~-~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTT-EEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccC-eEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            4578888888776654444456678899998763 455443 457899998875    111 111 000011  111111


Q ss_pred             ----ccccCCCCcEEEEecCCccceEEec-cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235          468 ----TAPDDNMASIVSWLQHDKLDGIRLR-HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL  541 (707)
Q Consensus       468 ----~~~~~~d~~i~iW~~~~~~~~~~~~-h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~  541 (707)
                          .++....+.|.+.+..+.....+.. .......|+++|.+.+|+.+... ....|.+.++...... ..+ ..-..
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~-~l~~~~l~~  541 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY-SLVTENIQW  541 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCC-EESCSSCSS
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCee-EEEeCCCCC
Confidence                2333456778888877665544433 23456788999876655544321 1237777777654332 222 33456


Q ss_pred             eEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeC---CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcce
Q 005235          542 PVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLET---GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY  616 (707)
Q Consensus       542 V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~---~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~  616 (707)
                      ...|+|+|++..|+++.  .+.|.++++..... ..+..   .......|++..+ .++++....++|..+|..++ +.+
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G-~~~  618 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG-SDV  618 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE-EEE
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC-Cce
Confidence            77899999877777765  57899999874322 22321   1233456666543 34445555678888887665 444


Q ss_pred             EEee
Q 005235          617 RVLK  620 (707)
Q Consensus       617 ~~l~  620 (707)
                      ..+.
T Consensus       619 ~~i~  622 (699)
T 1n7d_A          619 NLLA  622 (699)
T ss_dssp             ECCC
T ss_pred             EEee
Confidence            4443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.07  E-value=0.02  Score=63.26  Aligned_cols=160  Identities=13%  Similarity=0.167  Sum_probs=97.2

Q ss_pred             CeEEEEEeC-CCCEEEEEe--CCeEEEEECCCCeEEEEEeCCC---CCeEEEEE-------cCCCCEEEEEECCC-----
Q 005235          541 LPVSSVFHP-TRSIFFVST--KKNIRVYDLLKQRLIKKLETGL---KEVSSIAI-------HPAGDNLIVGSREG-----  602 (707)
Q Consensus       541 ~V~~v~fsp-d~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~---~~I~sl~~-------spdg~~L~sGs~Dg-----  602 (707)
                      ....|+|+| +...|+++.  .+.|++.|+.++.+...+....   .....|+|       +++|++|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899999 466666665  3679999998877665444322   24899999       99999777776654     


Q ss_pred             --cEEEEECCCCCcce-----EEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccC-CCCCCc----------
Q 005235          603 --KLCWFDMDLSSKPY-----RVLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSD-LNQNPL----------  663 (707)
Q Consensus       603 --~I~vwDl~~~~~~~-----~~l~~h~~~I~~vafsp-dg~llaSgs~Dg~I~Vwd~~~~~D-l~~~~~----------  663 (707)
                        .|.+++........     ..+... .....++++| ++.++++-..++.|..++...+.. ..+...          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              27777654411111     223222 2335788999 566777777888999996541000 001111          


Q ss_pred             -ccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEe
Q 005235          664 -IVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA-GADSVIRLYC  706 (707)
Q Consensus       664 -~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~-g~Dg~IrlWd  706 (707)
                       ...+..+. ...    .-..|+|+|+|.+|+.+ ...+.|+.++
T Consensus       299 ~~~~l~~~~-~~~----~p~~ia~~p~G~~lYvaD~~~h~I~kid  338 (496)
T 3kya_A          299 TFKQLFTIA-DPS----WEFQIFIHPTGKYAYFGVINNHYFMRSD  338 (496)
T ss_dssp             TEEEEEECS-SSS----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccceeEecC-CCC----CceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence             01121221 122    26899999999965544 4566777754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.07  E-value=0.13  Score=58.85  Aligned_cols=158  Identities=11%  Similarity=-0.044  Sum_probs=101.4

Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECC
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLL  568 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~  568 (707)
                      .....+..|+|++.+..|..+...  .+.|..+++.........+ ..-..+..+++.+.+..|+++.  .+.|.+.++.
T Consensus        37 ~~~~~~~~ld~~~~~~~ly~sD~~--~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d  114 (619)
T 3s94_A           37 GGLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD  114 (619)
T ss_dssp             BCCSCEEEEEEETTTTEEEEEETT--TTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCCCceEEEEEEeCCCEEEEEECC--CCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC
Confidence            344567899999977777666543  2488888887654321333 3336789999999777777775  6899999997


Q ss_pred             CCeEEEEEeCCCCCeEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE-eCCC
Q 005235          569 KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR--EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC-SDDC  645 (707)
Q Consensus       569 ~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~--Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg-s~Dg  645 (707)
                      .......+.........|+++|.+.+|.....  .+.|...+++.. .........-...+.+++++++..|..+ +..+
T Consensus       115 G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~  193 (619)
T 3s94_A          115 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN  193 (619)
T ss_dssp             SCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTC
T ss_pred             CCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCC
Confidence            54322223234455789999998666666553  467888888633 3233333334567899999976655444 4567


Q ss_pred             cEEEEec
Q 005235          646 TAYVFHG  652 (707)
Q Consensus       646 ~I~Vwd~  652 (707)
                      .|..++.
T Consensus       194 ~I~~~~~  200 (619)
T 3s94_A          194 FIHKSNL  200 (619)
T ss_dssp             CEEEESS
T ss_pred             eEEEecC
Confidence            7888843

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.04  E-value=0.22  Score=52.52  Aligned_cols=224  Identities=12%  Similarity=0.000  Sum_probs=117.2

Q ss_pred             EEEEeCCCcEEEEeCCCCe-EEEEEe----cCCcEEEEEEccC---CCccEEEEEe----C----CeEEEEECCCCCchh
Q 005235          391 EYKGSTDGTVRIWEVESGR-CLRVLE----IGEAIQYVAWNPL---PELPVLAVSV----G----QDVLILNTGLGNEEE  454 (707)
Q Consensus       391 l~sgs~DgtVrIWd~~tg~-~l~~l~----~~~~V~~v~~spd---g~~~lla~s~----d----~~V~lwd~~~~~~~~  454 (707)
                      ++.+..+|.|++++ .+|+ .+..+.    .......|+|+|+   +. .|+++..    +    +.|..|+.......+
T Consensus        42 l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g-~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~  119 (354)
T 3a9g_A           42 YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKS-WVYLYASYFAEGGHIRNRVIRGRLDGSTFKL  119 (354)
T ss_dssp             EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSC-EEEEEEEEECGGGCEEEEEEEEEECSSSCCE
T ss_pred             EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCC-EEEEEEeccCCCCCcceEEEEEEECCCCcCc
Confidence            55556679999997 4565 222211    1456899999997   31 4555543    2    456666654321000


Q ss_pred             cccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC----------CccEEEEE
Q 005235          455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG----------ESRAIFMH  524 (707)
Q Consensus       455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg----------~~~~V~Iw  524 (707)
                      .  .                 .-.++.      ..-.........|+|.|+|.++++.+..+          ..+.|.-.
T Consensus       120 ~--~-----------------~~~l~~------~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri  174 (354)
T 3a9g_A          120 K--E-----------------VKTLID------GIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRV  174 (354)
T ss_dssp             E--E-----------------EEEEEE------EEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred             C--c-----------------cEEEEE------cCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEE
Confidence            0  0                 000110      00001112346799999998777654322          11355555


Q ss_pred             ECCCCc-------eeeeee-ccCCCeEEEEEeC-CCCEEEEEe--CC--eEEEEECCC----------------CeEEEE
Q 005235          525 QLSKKL-------SHRIPF-KLHGLPVSSVFHP-TRSIFFVST--KK--NIRVYDLLK----------------QRLIKK  575 (707)
Q Consensus       525 dl~~~~-------~~~~~~-~~~~~V~~v~fsp-d~~~l~v~s--dg--~I~iwDl~~----------------~~~~~~  575 (707)
                      +....-       .. ..+ ........++|+| ++.++++-.  ++  .|.+.....                ..++..
T Consensus       175 ~~dG~~p~~npf~~~-~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~  253 (354)
T 3a9g_A          175 DEEGRPPADNPFPNS-PIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVID  253 (354)
T ss_dssp             CTTSCCCTTSSSTTC-CEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             cCCCCCCCCCCCCCC-cEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEee
Confidence            554320       01 122 2223467899999 566555433  22  233332110                012222


Q ss_pred             EeCCCCCeEEEEEc-------CCCCEEEEEECCCcEEEEECCCCCcce--EEe-ecCCCCEEEEEEcCCCCEEEEEe
Q 005235          576 LETGLKEVSSIAIH-------PAGDNLIVGSREGKLCWFDMDLSSKPY--RVL-KCHPKDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       576 l~~~~~~I~sl~~s-------pdg~~L~sGs~Dg~I~vwDl~~~~~~~--~~l-~~h~~~I~~vafspdg~llaSgs  642 (707)
                      +.........++|.       .+|.++++....+.|..+++.......  ..+ ..-...+..|++.|+|.++++..
T Consensus       254 ~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          254 TGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            31122457888883       567666666667789998887532222  222 22245789999999998777664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.02  E-value=0.12  Score=54.63  Aligned_cols=243  Identities=14%  Similarity=0.095  Sum_probs=123.9

Q ss_pred             CcEEEEEEccCCCcc-EEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          418 EAIQYVAWNPLPELP-VLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       418 ~~V~~v~~spdg~~~-lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .....|+|.|+|  . ++++...+.|.+++........      +...                      ..........
T Consensus        18 ~~P~~i~~~pdG--~~l~V~e~~G~i~~~~~~g~~~~~------~~~~----------------------~~v~~~g~~g   67 (353)
T 2g8s_A           18 DHPWALAFLPDN--HGMLITLRGGELRHWQAGKGLSAP------LSGV----------------------PDVWAHGQGG   67 (353)
T ss_dssp             SSEEEEEECSTT--CCEEEEETTTEEEEEETTTEECCC------CBSC----------------------CCCCCSTTCS
T ss_pred             CCcEEEEEcCCC--CEEEEEeCCceEEEEeCCCceeeE------ecCC----------------------cccccCCCCC
Confidence            456899999999  5 8888888999998843210000      0000                      0001112345


Q ss_pred             eEEEEEcCC---CCEEEEE-eCCCC----ccEEEEEECCCCc----eeeeee---c----cCCCeEEEEEeCCCCEEEEE
Q 005235          497 VSSVEWHRR---GDYLSTV-MPAGE----SRAIFMHQLSKKL----SHRIPF---K----LHGLPVSSVFHPTRSIFFVS  557 (707)
Q Consensus       497 V~~v~~sp~---g~~lat~-s~dg~----~~~V~Iwdl~~~~----~~~~~~---~----~~~~V~~v~fspd~~~l~v~  557 (707)
                      ...|+|+|+   +.+|..+ +..+.    ...|..+++....    .....+   .    .......++|.|+|.++++.
T Consensus        68 ~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           68 LLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             ceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence            678999995   4444333 22110    2356666665431    110111   1    11224679999999555543


Q ss_pred             eC--------------CeEEEEECCCCe------------EEEEEeCCCCCeEEEEEcC-CCCEEEEEECCC--cEEEEE
Q 005235          558 TK--------------KNIRVYDLLKQR------------LIKKLETGLKEVSSIAIHP-AGDNLIVGSREG--KLCWFD  608 (707)
Q Consensus       558 sd--------------g~I~iwDl~~~~------------~~~~l~~~~~~I~sl~~sp-dg~~L~sGs~Dg--~I~vwD  608 (707)
                      ++              +.|.-++....-            ....+..+......|+|+| +|.+++ +....  .=.|.-
T Consensus       148 Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~-~d~g~~~~dei~~  226 (353)
T 2g8s_A          148 GENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWL-NEHGPRGGDEINI  226 (353)
T ss_dssp             CCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEE-EEECSBSCEEEEC
T ss_pred             CCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEE-EecCCCCCcEEeE
Confidence            33              367777765320            1112222335578999999 554444 33321  111211


Q ss_pred             CCCC------------------------------CcceEEeecCCCCEEEEEEcC-------CCCEEEEEeCCCcEEEEe
Q 005235          609 MDLS------------------------------SKPYRVLKCHPKDITNVAFHR-------SYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       609 l~~~------------------------------~~~~~~l~~h~~~I~~vafsp-------dg~llaSgs~Dg~I~Vwd  651 (707)
                      +..+                              ..+...+..| .+...++|..       ++.+|++.-..+.|...+
T Consensus       227 i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~  305 (353)
T 2g8s_A          227 PQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMS  305 (353)
T ss_dssp             CCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEE
T ss_pred             eccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEE
Confidence            1111                              1233334333 4677888864       466777766677777764


Q ss_pred             cccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe-CCCcE
Q 005235          652 GMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG-ADSVI  702 (707)
Q Consensus       652 ~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g-~Dg~I  702 (707)
                      +.      ..........+.+...    .+.++++.|+|.++++.. .+|.|
T Consensus       306 ~~------~~~~~~~~~~~~~~~~----rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          306 VN------GDKVTEDGRILTDRGQ----RIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             EE------TTEEEEEEEESGGGCC----CEEEEEECTTSCEEEEECSTTEEE
T ss_pred             eC------CCeEeeeEEcccCCCC----ceeEEEECCCCcEEEEEeCCCCEE
Confidence            43      1111101111222222    299999999998666543 44544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.00  E-value=0.53  Score=50.66  Aligned_cols=219  Identities=10%  Similarity=0.124  Sum_probs=144.3

Q ss_pred             CCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCc
Q 005235          397 DGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMAS  476 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~  476 (707)
                      ..++.|+|+++...++.+...+.|..=.|-.+.   .++.-.+..|+-|++...                       ...
T Consensus        85 g~~lQiFnle~K~klks~~~~e~VvfWkWis~~---~l~lVT~taVyHWsi~~~-----------------------s~P  138 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN---TVALVTDNAVYHWSMEGE-----------------------SQP  138 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT---EEEEECSSEEEEEESSSS-----------------------CCC
T ss_pred             CCeEEEEchHHhhhhcceecCCCceEEEecCCC---eEEEEcCCeeEEecccCC-----------------------CCc
Confidence            678999999999999999998888888887775   677778889999997542                       345


Q ss_pred             EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC---CC-CccEEEEEECCCCceeeeee-ccCCCeEEEEEeCC-
Q 005235          477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP---AG-ESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPT-  550 (707)
Q Consensus       477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~---dg-~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd-  550 (707)
                      ++++++.....      ...|.....+++.++++..+-   ++ -.+.+.+|..+.+.++  .+ +|-+....+.+..+ 
T Consensus       139 ~kvFdR~~~L~------~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--~ieGhaa~F~~~~~~g~~  210 (494)
T 1bpo_A          139 VKMFDRHSSLA------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASFAQFKMEGNA  210 (494)
T ss_dssp             EEEEECCGGGT------TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE--EECCSEEEEEEEECTTCS
T ss_pred             hhheecchhcc------cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc--hheeeeeeeEEEecCCCC
Confidence            66666554332      345666667778888775543   11 2348899999988775  45 55433333322211 


Q ss_pred             -C-CEEEEEe----CCeEEEEECCCC--------e-EEEEEeC---CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          551 -R-SIFFVST----KKNIRVYDLLKQ--------R-LIKKLET---GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       551 -~-~~l~v~s----dg~I~iwDl~~~--------~-~~~~l~~---~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                       . .+|+.+.    .+.++|.++...        + .+..+..   ...-.-+|.+++.-..+..-+.-|.|.+||+.++
T Consensus       211 ~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg  290 (494)
T 1bpo_A          211 EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG  290 (494)
T ss_dssp             SEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred             CCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc
Confidence             1 2333343    378999998542        1 1111111   1244678899999899999999999999999998


Q ss_pred             CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          613 SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       613 ~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                       .++..-+-....|...+.+....=++.....|.|.--
T Consensus       291 -t~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v  327 (494)
T 1bpo_A          291 -TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV  327 (494)
T ss_dssp             -CEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred             -eeeeeecccCCceEEecccCCCCcEEEEccCceEEEE
Confidence             5665555556666665555554444445566655444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.73  E-value=0.15  Score=53.81  Aligned_cols=142  Identities=16%  Similarity=0.246  Sum_probs=84.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-e---ee-ccCCCeEEEEEeCC---CCEEEEEe--C----
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-I---PF-KLHGLPVSSVFHPT---RSIFFVST--K----  559 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~---~~-~~~~~V~~v~fspd---~~~l~v~s--d----  559 (707)
                      -.....++|.|+|.++++ ...+   .|.+++  .+.... .   .+ ........++|+|+   +..|+++.  .    
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g---~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPG---RIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTT---EEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CCCceEEEEcCCCeEEEE-eCCC---eEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            445789999999996655 4445   888888  332210 1   11 23467899999998   56666654  2    


Q ss_pred             -CeEEEEECCCCe------EEEEEe---CCCCCeEEEEEcCCCCEEEEEEC-------------CCcEEEEECCCC----
Q 005235          560 -KNIRVYDLLKQR------LIKKLE---TGLKEVSSIAIHPAGDNLIVGSR-------------EGKLCWFDMDLS----  612 (707)
Q Consensus       560 -g~I~iwDl~~~~------~~~~l~---~~~~~I~sl~~spdg~~L~sGs~-------------Dg~I~vwDl~~~----  612 (707)
                       +.|..|++..+.      ++..+.   ........|+|.|+|.++++.+.             .|+|.-++.+..    
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~  183 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG  183 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence             678888877432      122233   11123468999999976665322             256766666530    


Q ss_pred             --------CcceEEeecCCCCEEEEEEcC-CCCEEEEEe
Q 005235          613 --------SKPYRVLKCHPKDITNVAFHR-SYPLFASCS  642 (707)
Q Consensus       613 --------~~~~~~l~~h~~~I~~vafsp-dg~llaSgs  642 (707)
                              ........+| .....++|+| ++.++++-.
T Consensus       184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred             CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence                    0111112233 3356789999 677666544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.72  E-value=0.16  Score=53.60  Aligned_cols=187  Identities=12%  Similarity=0.092  Sum_probs=110.0

Q ss_pred             CCeEEEEEcCCCCEEEEEe------------CCCCccEEEEEECCCC--ceeeeee-c-----cCCCeEEEEEeC--CCC
Q 005235          495 KMVSSVEWHRRGDYLSTVM------------PAGESRAIFMHQLSKK--LSHRIPF-K-----LHGLPVSSVFHP--TRS  552 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s------------~dg~~~~V~Iwdl~~~--~~~~~~~-~-----~~~~V~~v~fsp--d~~  552 (707)
                      .....++..++|..+++++            .+|   .|.++|+.+.  +.....+ +     .......+.+.+  ++.
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G---~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~  126 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSG---KILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT  126 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CC---EEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCC---eEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCc
Confidence            3456777788876655552            344   9999999743  3221222 2     234677888876  343


Q ss_pred             -EEEEEe----CCeEEEEECCC--C--eEEEEEeCC-CCCeEEEEEcCCCCEEEEEEC-----------------CCcEE
Q 005235          553 -IFFVST----KKNIRVYDLLK--Q--RLIKKLETG-LKEVSSIAIHPAGDNLIVGSR-----------------EGKLC  605 (707)
Q Consensus       553 -~l~v~s----dg~I~iwDl~~--~--~~~~~l~~~-~~~I~sl~~spdg~~L~sGs~-----------------Dg~I~  605 (707)
                       +|+++.    +.+|.+|++..  +  ..+.++.+. -...+.+++.++|.+.++...                 .|.|.
T Consensus       127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence             566654    36777877654  2  233444432 244789999999988777541                 24455


Q ss_pred             EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235          606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC-SDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC  684 (707)
Q Consensus       606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg-s~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l  684 (707)
                      -+|.  + . .+.+...-..-+.++|||+++.|+.+ +..+.|..|++..      .........+.- ..    ..-.+
T Consensus       207 r~d~--~-~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~------~g~l~~~~~~~~-~g----~PDGi  271 (355)
T 3sre_A          207 YYSP--N-D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA------NWTLTPLRVLSF-DT----LVDNI  271 (355)
T ss_dssp             EECT--T-C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT------TSCEEEEEEEEC-SS----EEEEE
T ss_pred             EEEC--C-e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC------CCcEecCEEEeC-CC----CCceE
Confidence            5554  2 2 22332233457899999999866555 4678899996531      111112233321 12    26788


Q ss_pred             EEcC-CCCEEEEEeCC
Q 005235          685 KFHP-RQPWLFTAGAD  699 (707)
Q Consensus       685 ~fsp-dg~~L~s~g~D  699 (707)
                      ++.+ +|.+.+++..+
T Consensus       272 ~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          272 SVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EECTTTCCEEEEEESC
T ss_pred             EEeCCCCcEEEEecCC
Confidence            8998 58877766533

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.63  E-value=0.25  Score=53.13  Aligned_cols=142  Identities=14%  Similarity=0.182  Sum_probs=99.1

Q ss_pred             cCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--cc---CCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe------
Q 005235          503 HRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KL---HGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR------  571 (707)
Q Consensus       503 sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~---~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~------  571 (707)
                      +.+|.-++++..    +.|+.-++...... +.+  ..   -..+..+..+|+|.+|++.++..|.|..+..+.      
T Consensus        29 ~~n~t~i~~a~~----n~iR~~~i~~~~~Y-k~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           29 SQNGTRIVFIQD----NIIRWYNVLTDSLY-HSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             ETTTTEEEEEET----TEEEEEETTTCSSC-EEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCH
T ss_pred             EcCCCEEEEEEC----CEEEEEECCCCCcc-eEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccc
Confidence            345666555553    28888888744433 444  21   236888999999999999999999999987321      


Q ss_pred             ------EEEEEeCC------CCCeEEEEEcCCC---CEEEEEECCCcEEEEECCCC-CcceEEeec---------CCCCE
Q 005235          572 ------LIKKLETG------LKEVSSIAIHPAG---DNLIVGSREGKLCWFDMDLS-SKPYRVLKC---------HPKDI  626 (707)
Q Consensus       572 ------~~~~l~~~------~~~I~sl~~spdg---~~L~sGs~Dg~I~vwDl~~~-~~~~~~l~~---------h~~~I  626 (707)
                            ..+.+.-+      ...|..+.|||-|   ..|++-..|+.|++||+... ..|. .|..         ....|
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence                  12344432      4669999999965   68999999999999999863 2344 4431         22568


Q ss_pred             EEEEEcCCCCEEEEEe--CCCcEEEE
Q 005235          627 TNVAFHRSYPLFASCS--DDCTAYVF  650 (707)
Q Consensus       627 ~~vafspdg~llaSgs--~Dg~I~Vw  650 (707)
                      .+++|..++-.|...+  ..|-|+-.
T Consensus       183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          183 TDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            8999999776555544  77887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.56  E-value=0.047  Score=53.43  Aligned_cols=143  Identities=11%  Similarity=0.018  Sum_probs=88.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCC--------eEEEEEeCCCCEEEEEeCCeEEEEE
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGL--------PVSSVFHPTRSIFFVSTKKNIRVYD  566 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~--------V~~v~fspd~~~l~v~sdg~I~iwD  566 (707)
                      ..++.++|+|+|.+.++  .+|   .+.-.+..+...+ .=+.....        ..++.|.|+|.+.++ +||.|+-++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G---~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LND---KIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETT---EEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEES
T ss_pred             ccceeEEECCCccEEEE--eCC---eEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeC
Confidence            47789999999986666  555   6655555443322 11122222        378999999998888 889998887


Q ss_pred             CCCC-------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-----ceEEee-cCCCCEEEEEEcC
Q 005235          567 LLKQ-------RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK-----PYRVLK-CHPKDITNVAFHR  633 (707)
Q Consensus       567 l~~~-------~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~-----~~~~l~-~h~~~I~~vafsp  633 (707)
                      --+.       .-.+.-...-..+..|.+.|+|.+.++.  |+.++-...-+...     ....+- ......+-+.|.+
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            5331       1111222233568999999999888877  77765433321110     111221 2333456688999


Q ss_pred             CCCEEEEEeCCCcEEEE
Q 005235          634 SYPLFASCSDDCTAYVF  650 (707)
Q Consensus       634 dg~llaSgs~Dg~I~Vw  650 (707)
                      ++.++++.  +|  ++|
T Consensus       192 ~G~l~~v~--~g--~~Y  204 (236)
T 1tl2_A          192 VGTLFGVQ--GG--KFY  204 (236)
T ss_dssp             TSCEEEEE--TT--EEE
T ss_pred             CCcEEEEe--CC--eEE
Confidence            99988776  66  455

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.38  E-value=3  Score=51.06  Aligned_cols=255  Identities=12%  Similarity=0.029  Sum_probs=136.2

Q ss_pred             CCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC--------eEEEEEecCCcEEEEEEccC---CCccEEEEEe---CCe
Q 005235          376 PSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG--------RCLRVLEIGEAIQYVAWNPL---PELPVLAVSV---GQD  441 (707)
Q Consensus       376 p~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg--------~~l~~l~~~~~V~~v~~spd---g~~~lla~s~---d~~  441 (707)
                      |.+..+..+.  ..++|.||.-|.=.+|.+...        +.+.++..-++|..++....   +...|++++.   +|.
T Consensus       327 ~~~ssl~~l~--~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gs  404 (1158)
T 3ei3_A          327 SIAECLTYLD--NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGS  404 (1158)
T ss_dssp             SCCSEEEECS--TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCE
T ss_pred             cCccEEEEEC--CCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCe
Confidence            3344443332  348899998888777777643        45666777889998887542   2236777664   467


Q ss_pred             EEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCc----------------cceEEeccCCCeEEE---EE
Q 005235          442 VLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDK----------------LDGIRLRHFKMVSSV---EW  502 (707)
Q Consensus       442 V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~----------------~~~~~~~h~~~V~~v---~~  502 (707)
                      ++++...-+-....              ...-.+...+|.+...                ...... ....+..+   .|
T Consensus       405 L~~lr~Gi~~~~~~--------------~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i-~~e~veev~~~gf  469 (1158)
T 3ei3_A          405 LRIIRNGIGIHEHA--------------SIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLML-NGEEVEETELMGF  469 (1158)
T ss_dssp             EEEEEESBCEEEEE--------------EECCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEE-ETTEEEEECCTTC
T ss_pred             EEEEecCCCEEEEE--------------eecCCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEE-eCCcccccccccc
Confidence            88776443311110              0001122334433211                000000 00111111   11


Q ss_pred             cCCCCEEEEEeCCC------CccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEE-
Q 005235          503 HRRGDYLSTVMPAG------ESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLI-  573 (707)
Q Consensus       503 sp~g~~lat~s~dg------~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~-  573 (707)
                      ..+...|+++.-.+      ....|++.+....... ...  .....|..++.+.  .++++++++.+.++.+..+++. 
T Consensus       470 ~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~-~~w~~p~~~~I~~As~n~--~~vvva~g~~l~~fel~~~~L~~  546 (1158)
T 3ei3_A          470 VDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV-SEWKEPQAKNISVASCNS--SQVVVAVGRALYYLQIHPQELRQ  546 (1158)
T ss_dssp             CSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEE-EEECCTTCCCCCEEEECS--SEEEEEETTEEEEEEEETTEEEE
T ss_pred             cCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEE-EEEECCCCCEEEEEEeCC--CEEEEEECCEEEEEEeeCCceee
Confidence            12223333332211      0124666666543333 334  2334566666553  4677767778888887765432 


Q ss_pred             -EEEeCCCCCeEEEEEcCC------CCEEEEEEC-CCcEEEEECCCCCcceEEeec-CCCCEEEEEEcC--CCCEEEEEe
Q 005235          574 -KKLETGLKEVSSIAIHPA------GDNLIVGSR-EGKLCWFDMDLSSKPYRVLKC-HPKDITNVAFHR--SYPLFASCS  642 (707)
Q Consensus       574 -~~l~~~~~~I~sl~~spd------g~~L~sGs~-Dg~I~vwDl~~~~~~~~~l~~-h~~~I~~vafsp--dg~llaSgs  642 (707)
                       .... -...|+|+++.|.      ++++++|.. |++|+|+++... .++....- -.....++.+..  ...+|..|-
T Consensus       547 ~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l-~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl  624 (1158)
T 3ei3_A          547 ISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF-ELLHKEMLGGEIIPRSILMTTFESSHYLLCAL  624 (1158)
T ss_dssp             EEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC-CEEEEEECCSSCCEEEEEEEEETTEEEEEEEE
T ss_pred             ecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC-CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEe
Confidence             2222 2357999999863      479999997 999999999864 33332221 123445554432  335788888


Q ss_pred             CCCcEEEEec
Q 005235          643 DDCTAYVFHG  652 (707)
Q Consensus       643 ~Dg~I~Vwd~  652 (707)
                      .||.+.-+.+
T Consensus       625 ~dG~l~~~~~  634 (1158)
T 3ei3_A          625 GDGALFYFGL  634 (1158)
T ss_dssp             TTSEEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9998876654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.17  E-value=0.16  Score=49.69  Aligned_cols=150  Identities=13%  Similarity=-0.006  Sum_probs=86.3

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCeEEEEECCCCe------EEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          540 GLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQR------LIKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~------~~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                      ..+..++|||++.+.++ .++.+.-.+..+..      .-..+- .+-....++.|+|+|.+.++  .||.|+-++--+.
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence            46779999999998777 88888877765521      112221 11122578999999988888  5699988876332


Q ss_pred             Ccc------eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE
Q 005235          613 SKP------YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF  686 (707)
Q Consensus       613 ~~~------~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f  686 (707)
                      ..-      .+.-+.-=..+..|.|.|+|.+.|..  |+.++-+. . +  ...+........+-++...  .--..+.|
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~-~-P--~~~~~~wl~~~~~~g~~g~--~~yr~l~f  189 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKAL-P-P--VSNQDNWLARATKIGQGGW--DTFKFLFF  189 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEEC-C-C--SSTTCCHHHHCEEEESSSG--GGEEEEEE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecC-C-C--CCCCcccccccceeccCCc--ceEEEEEE
Confidence            110      11111112468999999999988877  77643321 1 1  1111111111222222211  01455779


Q ss_pred             cCCCCEEEEEeCCCcE
Q 005235          687 HPRQPWLFTAGADSVI  702 (707)
Q Consensus       687 spdg~~L~s~g~Dg~I  702 (707)
                      .+++.+.+..  +|.+
T Consensus       190 ~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          190 SSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             CTTSCEEEEE--TTEE
T ss_pred             CCCCcEEEEe--CCeE
Confidence            9998766555  6643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.10  E-value=0.36  Score=52.79  Aligned_cols=105  Identities=11%  Similarity=0.177  Sum_probs=64.7

Q ss_pred             CCCeEEEEEeCCCCEEEEEeC-CeEEEEECCCCeEE--EEEeC------CCCCeEEEEEcCC---CCEEEEEE-C-----
Q 005235          539 HGLPVSSVFHPTRSIFFVSTK-KNIRVYDLLKQRLI--KKLET------GLKEVSSIAIHPA---GDNLIVGS-R-----  600 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~sd-g~I~iwDl~~~~~~--~~l~~------~~~~I~sl~~spd---g~~L~sGs-~-----  600 (707)
                      -....+++|.|+|.++++-.. +.|++++..+++..  ..+..      ....+..|+|+|+   +..|.+.. .     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            446789999999997776655 47999887655432  22221      2355789999995   44554443 2     


Q ss_pred             -------CCcEEEEECCCCC----c---ceEEee-cCCCCEEEEEEcCCCCEEEEEeC
Q 005235          601 -------EGKLCWFDMDLSS----K---PYRVLK-CHPKDITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       601 -------Dg~I~vwDl~~~~----~---~~~~l~-~h~~~I~~vafspdg~llaSgs~  643 (707)
                             ...|.-|++....    .   .+..+. ........|+|.|+|.++++.++
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   2356666664321    1   111122 11234789999999998887664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.02  E-value=0.93  Score=47.60  Aligned_cols=140  Identities=14%  Similarity=0.148  Sum_probs=80.2

Q ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCCccEEEEEECCCCceeeeee--------ccCCCeEEEEEeCC---CCEEEEEe-C-
Q 005235          494 FKMVSSVEWHRRGD-YLSTVMPAGESRAIFMHQLSKKLSHRIPF--------KLHGLPVSSVFHPT---RSIFFVST-K-  559 (707)
Q Consensus       494 ~~~V~~v~~sp~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--------~~~~~V~~v~fspd---~~~l~v~s-d-  559 (707)
                      -.....|+|.|+|+ +++ +...+   .|++++.... .. .++        ...+....++|+|+   +..|+++. . 
T Consensus        17 l~~P~~i~~~pdG~~l~V-~e~~G---~i~~~~~~g~-~~-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~   90 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLI-TLRGG---ELRHWQAGKG-LS-APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV   90 (353)
T ss_dssp             ESSEEEEEECSTTCCEEE-EETTT---EEEEEETTTE-EC-CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred             CCCcEEEEEcCCCCEEEE-EeCCc---eEEEEeCCCc-ee-eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCC
Confidence            34568999999999 554 45556   8888885432 11 111        23456789999996   55665553 1 


Q ss_pred             -------CeEEEEECCCC--e--EEEEE-eC------CCCCeEEEEEcCCCCEEEEEEC-------------CCcEEEEE
Q 005235          560 -------KNIRVYDLLKQ--R--LIKKL-ET------GLKEVSSIAIHPAGDNLIVGSR-------------EGKLCWFD  608 (707)
Q Consensus       560 -------g~I~iwDl~~~--~--~~~~l-~~------~~~~I~sl~~spdg~~L~sGs~-------------Dg~I~vwD  608 (707)
                             ..|..|++...  .  ....+ ..      .......|+|.|+|.++++-+.             .|+|.-++
T Consensus        91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~  170 (353)
T 2g8s_A           91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT  170 (353)
T ss_dssp             CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred             CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence                   25666666532  1  12222 11      1122467999999955554322             24677777


Q ss_pred             CCCCC---c--------ceEEe-ecCCCCEEEEEEcC-CCCEEEE
Q 005235          609 MDLSS---K--------PYRVL-KCHPKDITNVAFHR-SYPLFAS  640 (707)
Q Consensus       609 l~~~~---~--------~~~~l-~~h~~~I~~vafsp-dg~llaS  640 (707)
                      .+..-   .        ....+ .+| .....++|+| .+.++++
T Consensus       171 ~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          171 DQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence            75320   0        11122 233 3468899999 6766654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.88  E-value=2.1  Score=44.83  Aligned_cols=229  Identities=12%  Similarity=0.049  Sum_probs=117.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEE--Ee-----cCCcEEEEEEccC----CCccEEEEE---eCCeEEEEECCCCCchh
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRV--LE-----IGEAIQYVAWNPL----PELPVLAVS---VGQDVLILNTGLGNEEE  454 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~--l~-----~~~~V~~v~~spd----g~~~lla~s---~d~~V~lwd~~~~~~~~  454 (707)
                      .++++--..|.|++++..+|+....  +.     .......|+|+|+    +  .|++.-   .++.|.-|.+..+....
T Consensus        44 ~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g--~lYv~yt~~~~~~v~R~~~~~~~~~~  121 (347)
T 3das_A           44 DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH--MVYAYFTSASDNRIVRMLYDEKKPSG  121 (347)
T ss_dssp             CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC--EEEEEEECSSSEEEEEEEBCTTSCTT
T ss_pred             cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCC--EEEEEEecCCCCEEEEEEeCCCCccc
Confidence            3555544489999998766654322  21     1567899999995    4  454432   23445555543321000


Q ss_pred             cccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC----------CccEEEEE
Q 005235          455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG----------ESRAIFMH  524 (707)
Q Consensus       455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg----------~~~~V~Iw  524 (707)
                      .                .....-.++..      .-.........|+|.|+|.++++.+..+          ..+.|.-.
T Consensus       122 ~----------------~~~~~~~i~~~------~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi  179 (347)
T 3das_A          122 E----------------QLGAPDTVFRG------IPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM  179 (347)
T ss_dssp             C----------------CBCCCEEEEEE------ECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred             c----------------cCCCcEEEEEc------CCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence            0                00001111210      0001122346799999998777765322          11244444


Q ss_pred             ECCCCce------eeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe------------------EEEEEe
Q 005235          525 QLSKKLS------HRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR------------------LIKKLE  577 (707)
Q Consensus       525 dl~~~~~------~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~------------------~~~~l~  577 (707)
                      +....-.      ....+ ........++|+|++.++++-.  ++.-.|.-+..+.                  ++..+.
T Consensus       180 ~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~  259 (347)
T 3das_A          180 TPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS  259 (347)
T ss_dssp             CTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC
T ss_pred             eCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC
Confidence            4433200      00122 2234567899999887666533  3323332222221                  122333


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC---cceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235          578 TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS---KPYRVLKCHPKDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       578 ~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~---~~~~~l~~h~~~I~~vafspdg~llaSgs  642 (707)
                      .+....+.|+|. +|..++..-..+.|....+....   .+...+.+....++.|+..|+|.++++-+
T Consensus       260 ~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          260 TDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            222346677776 45555555555667777775431   12233444456799999999998666544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.68  E-value=3  Score=44.96  Aligned_cols=253  Identities=10%  Similarity=0.141  Sum_probs=143.6

Q ss_pred             EeCCCcEEEEeC-CCCeEEEEEec--CCcEE-------EEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          394 GSTDGTVRIWEV-ESGRCLRVLEI--GEAIQ-------YVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       394 gs~DgtVrIWd~-~tg~~l~~l~~--~~~V~-------~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      -..|.-|.|-+- ..+..+..+..  ...|.       +.-.+|..  .++|.-.+.++.|+|+++....          
T Consensus        32 mESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~--~iiALrag~~lQiFnle~K~kl----------   99 (494)
T 1bpo_A           32 MESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPAS--KVIALKAGKTLQIFNIEMKSKM----------   99 (494)
T ss_dssp             EEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCSEEEECSSS--SCEEEEETTEEEEEETTTTEEE----------
T ss_pred             eecCceEEEEecCCCCCeEEEEECCCCCcceecccccceeeeCCCC--cEEEEecCCeEEEEchHHhhhh----------
Confidence            356777777773 33444555555  22332       45577776  5677667778888887664221          


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc----
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL----  538 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~----  538 (707)
                                               ........|.-=.|-.. +.|+.++.    ..|+.|++.........| .|    
T Consensus       100 -------------------------ks~~~~e~VvfWkWis~-~~l~lVT~----taVyHWsi~~~s~P~kvFdR~~~L~  149 (494)
T 1bpo_A          100 -------------------------KAHTMTDDVTFWKWISL-NTVALVTD----NAVYHWSMEGESQPVKMFDRHSSLA  149 (494)
T ss_dssp             -------------------------EEEECSSCCCEEEEEET-TEEEEECS----SEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             -------------------------cceecCCCceEEEecCC-CeEEEEcC----CeeEEecccCCCCchhheecchhcc
Confidence                                     11122334555556433 44555553    289999997644332455 33    


Q ss_pred             CCCeEEEEEeCCCCEEEEEe--------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC---CEEEEEECC---CcE
Q 005235          539 HGLPVSSVFHPTRSIFFVST--------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG---DNLIVGSRE---GKL  604 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~s--------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg---~~L~sGs~D---g~I  604 (707)
                      ...|.....+++.++++..+        .|.+.+|....+ ..+.+.+|......+.+..+.   ..++.+...   +++
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL  228 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  228 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence            34566777789999987532        278999998754 445677775544444332111   244444432   789


Q ss_pred             EEEECCCC---Ccce--EEee------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCC
Q 005235          605 CWFDMDLS---SKPY--RVLK------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH  673 (707)
Q Consensus       605 ~vwDl~~~---~~~~--~~l~------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh  673 (707)
                      .|.++...   ..++  +...      +-..---++..|+.+.++..-+.-|.|++||      +.++.+   +..-+-.
T Consensus       229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyD------leTgt~---i~~nrIs  299 (494)
T 1bpo_A          229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYD------LETGTC---IYMNRIS  299 (494)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEE------TTTCCE---EEEEECC
T ss_pred             EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEe------ccccee---eeeeccc
Confidence            99998643   1111  1111      1123345788899999999999999999994      555543   2222222


Q ss_pred             CCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235          674 TSSNGRGVMDCKFHPRQPWLFTAGADSVI  702 (707)
Q Consensus       674 ~~~~~~gV~~l~fspdg~~L~s~g~Dg~I  702 (707)
                      ...    |...+-+....-++.....|.|
T Consensus       300 ~~~----iF~t~~~~~~~Gi~~Vnr~GqV  324 (494)
T 1bpo_A          300 GET----IFVTAPHEATAGIIGVNRKGQV  324 (494)
T ss_dssp             SSC----EEEEEEETTTTEEEEEETTCEE
T ss_pred             CCc----eEEecccCCCCcEEEEccCceE
Confidence            222    4444444444444444455544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.64  E-value=2.7  Score=44.19  Aligned_cols=145  Identities=14%  Similarity=0.209  Sum_probs=88.3

Q ss_pred             CeEEEEEcC--CCC-EEEEEeCCCCccEEEEEECCCCceee---eee--ccCCCeEEEEEeCCCCEEEEEe----C----
Q 005235          496 MVSSVEWHR--RGD-YLSTVMPAGESRAIFMHQLSKKLSHR---IPF--KLHGLPVSSVFHPTRSIFFVST----K----  559 (707)
Q Consensus       496 ~V~~v~~sp--~g~-~lat~s~dg~~~~V~Iwdl~~~~~~~---~~~--~~~~~V~~v~fspd~~~l~v~s----d----  559 (707)
                      ....+.+.+  +|. +|+++.......+|.+|++.......   ..+  ..-...+.+++.++|.+.++..    +    
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~  192 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK  192 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence            456666655  454 45444433224588888776543221   223  2234678999999998766642    1    


Q ss_pred             ----------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcc--eEEeecCCCCE
Q 005235          560 ----------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSSKP--YRVLKCHPKDI  626 (707)
Q Consensus       560 ----------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~~~--~~~l~~h~~~I  626 (707)
                                +.|..||.  +++ ..+...-...+.|+|+|+|+.|.++. ..++|..|+++.....  .+.+ ......
T Consensus       193 ~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~P  268 (355)
T 3sre_A          193 SWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLV  268 (355)
T ss_dssp             HHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEE
T ss_pred             cchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCC
Confidence                      34555554  332 23333335578999999998887765 5678999998743222  2233 224556


Q ss_pred             EEEEEcC-CCCEEEEEeCC
Q 005235          627 TNVAFHR-SYPLFASCSDD  644 (707)
Q Consensus       627 ~~vafsp-dg~llaSgs~D  644 (707)
                      -.+++.+ +|.+.+++..+
T Consensus       269 DGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          269 DNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEECTTTCCEEEEEESC
T ss_pred             ceEEEeCCCCcEEEEecCC
Confidence            7889999 59988877644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.36  E-value=0.69  Score=56.82  Aligned_cols=206  Identities=10%  Similarity=0.132  Sum_probs=125.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT  468 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~  468 (707)
                      .+++-= ...++.|+|+.+...++.+.....|..=.|-...   .++.-.+..|.-|++....                 
T Consensus        78 ~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~---~l~lVT~~aVyHW~~~~~s-----------------  136 (1630)
T 1xi4_A           78 KVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN---TVALVTDNAVYHWSMEGES-----------------  136 (1630)
T ss_pred             ceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCC---eeEEEcCCeEEEeccCCCC-----------------
Confidence            344433 3678999999999999999888888888887765   5666677789999985421                 


Q ss_pred             cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC---C-CccEEEEEECCCCceeeeee-ccCCCeE
Q 005235          469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA---G-ESRAIFMHQLSKKLSHRIPF-KLHGLPV  543 (707)
Q Consensus       469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d---g-~~~~V~Iwdl~~~~~~~~~~-~~~~~V~  543 (707)
                            ..++++++.....      ...|..-..+++.++++..+-.   + -.|.+.+|....+.++  .+ +|-+...
T Consensus       137 ------~P~k~fdR~~~L~------~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ--~iegha~~F~  202 (1630)
T 1xi4_A          137 ------QPVKMFDRHSSLA------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASFA  202 (1630)
T ss_pred             ------ccHHHHhcchhcc------cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch--hhhHhHhhhh
Confidence                  1222332221111      3456666667788877755532   1 2358999999888764  44 5544433


Q ss_pred             EEEEe--CCC-CEEEEEe----CCeEEEEECCCC---------eEEEEEeCC---CCCeEEEEEcCCCCEEEEEECCCcE
Q 005235          544 SSVFH--PTR-SIFFVST----KKNIRVYDLLKQ---------RLIKKLETG---LKEVSSIAIHPAGDNLIVGSREGKL  604 (707)
Q Consensus       544 ~v~fs--pd~-~~l~v~s----dg~I~iwDl~~~---------~~~~~l~~~---~~~I~sl~~spdg~~L~sGs~Dg~I  604 (707)
                      .+.+.  +.. .+|+.+.    .+.++|.++...         +.+..+...   .....+|.+++.-..+..-+.-|.|
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~  282 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  282 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceE
Confidence            33332  112 2333232    378999988543         111111111   2335678888888888888999999


Q ss_pred             EEEECCCCCcceEEeecCCCCEEEEE
Q 005235          605 CWFDMDLSSKPYRVLKCHPKDITNVA  630 (707)
Q Consensus       605 ~vwDl~~~~~~~~~l~~h~~~I~~va  630 (707)
                      .+||+.++ .++..-+-....|...+
T Consensus       283 ~~~d~~t~-~~i~~~ris~~~iF~~~  307 (1630)
T 1xi4_A          283 HLYDLETG-TCIYMNRISGETIFVTA  307 (1630)
T ss_pred             EEEecccc-hhhhhccccCCceEEec
Confidence            99999988 44433332333343333

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.36  E-value=0.85  Score=49.83  Aligned_cols=103  Identities=15%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-c------cCCCeEEEEEeCC---CCEEEEEe-C--
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-K------LHGLPVSSVFHPT---RSIFFVST-K--  559 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~------~~~~V~~v~fspd---~~~l~v~s-d--  559 (707)
                      -.....|+|.|+|+++++-...+   .|.+++...+.... ..+ .      ..+.+..|+|+|+   +..|+++. .  
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg---~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATG---KILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTC---EEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCC---EEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence            44678999999999777755433   68888765444321 122 1      2456779999996   55665543 1  


Q ss_pred             -----------CeEEEEECCCC--e-----EEE-EEeC-CCCCeEEEEEcCCCCEEEEEE
Q 005235          560 -----------KNIRVYDLLKQ--R-----LIK-KLET-GLKEVSSIAIHPAGDNLIVGS  599 (707)
Q Consensus       560 -----------g~I~iwDl~~~--~-----~~~-~l~~-~~~~I~sl~~spdg~~L~sGs  599 (707)
                                 ..|.-|++..+  .     .+. .+.. .......|+|.|+|.++++.+
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                       24555655321  1     121 1221 123478999999998776643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.22  E-value=1.6  Score=48.43  Aligned_cols=82  Identities=17%  Similarity=0.107  Sum_probs=54.6

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235          625 DITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR  703 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir  703 (707)
                      ....+.++|||++++.++ .+.+|.|+++....++..+....|-..+.+.-. -++|.+..+|.++|....|.--|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence            345688999999777665 678999998875444333332222222222222 256799999999995445556899999


Q ss_pred             EEeC
Q 005235          704 LYCH  707 (707)
Q Consensus       704 lWdl  707 (707)
                      -|++
T Consensus       403 kWni  406 (638)
T 3sbq_A          403 KWNM  406 (638)
T ss_dssp             EEEH
T ss_pred             EEec
Confidence            9985

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.56  E-value=0.69  Score=46.79  Aligned_cols=140  Identities=8%  Similarity=0.057  Sum_probs=72.5

Q ss_pred             CCCEEEEEeCCCC--ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEEEE
Q 005235          505 RGDYLSTVMPAGE--SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLIKK  575 (707)
Q Consensus       505 ~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~~~  575 (707)
                      ++..++.|+.++.  ...+.++|+.+..-... ++.....-.+++.. ++.+++.|+ +     ..+.+||+.+.+-...
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  190 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV  190 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence            5666777765442  24789999887764311 12211111222222 555656554 2     5699999988754322


Q ss_pred             --EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEEeCCC
Q 005235          576 --LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASCSDDC  645 (707)
Q Consensus       576 --l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSgs~Dg  645 (707)
                        +........++.+  ++..++.|+.+     ..+.+||+.+. + ...+...   ......+.+  ++.+++.|+.++
T Consensus       191 ~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  264 (301)
T 2vpj_A          191 TPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD-S-WTTVTSMTTPRCYVGATVL--RGRLYAIAGYDG  264 (301)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             CCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC-c-EEECCCCCCcccceeEEEE--CCEEEEEcCcCC
Confidence              2111122233333  56777888764     46899999764 2 3333211   111122222  566777776553


Q ss_pred             -----cEEEEe
Q 005235          646 -----TAYVFH  651 (707)
Q Consensus       646 -----~I~Vwd  651 (707)
                           .|.+||
T Consensus       265 ~~~~~~v~~yd  275 (301)
T 2vpj_A          265 NSLLSSIECYD  275 (301)
T ss_dssp             SSBEEEEEEEE
T ss_pred             CcccccEEEEc
Confidence                 455564

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.31  E-value=1.3  Score=44.84  Aligned_cols=141  Identities=10%  Similarity=0.120  Sum_probs=72.9

Q ss_pred             CCCEEEEEeCC-C--CccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe----------CCeEEEEECCCC
Q 005235          505 RGDYLSTVMPA-G--ESRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST----------KKNIRVYDLLKQ  570 (707)
Q Consensus       505 ~g~~lat~s~d-g--~~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s----------dg~I~iwDl~~~  570 (707)
                      ++..++.|+.+ +  ....+.+||+.+..-... ++.....-.+++.. ++.+++.|+          -..+.+||+.+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            56677777654 2  234788999988764311 12111111222222 455555553          234889999887


Q ss_pred             eEEEE--EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCCcceEEeec---CCCCEEEEEEcCCCCEEEE
Q 005235          571 RLIKK--LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLSSKPYRVLKC---HPKDITNVAFHRSYPLFAS  640 (707)
Q Consensus       571 ~~~~~--l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~~~~~~~l~~---h~~~I~~vafspdg~llaS  640 (707)
                      +-...  +........++.+  ++..++.|+.+     ..+.+||+.+.  ....+..   ......++.+  ++.+++.
T Consensus       180 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~  253 (306)
T 3ii7_A          180 TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAV--GSIVYVL  253 (306)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred             eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCCccceeEEEE--CCEEEEE
Confidence            53322  1111112233333  56777777654     35889998764  1222221   1112223333  6677888


Q ss_pred             EeCC-----CcEEEEec
Q 005235          641 CSDD-----CTAYVFHG  652 (707)
Q Consensus       641 gs~D-----g~I~Vwd~  652 (707)
                      |+.+     ..|.+||.
T Consensus       254 GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          254 AGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             ECBCSSSBCCEEEEEET
T ss_pred             eCcCCCeeeeeEEEEcC
Confidence            8754     35677743

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.24  E-value=1.7  Score=43.90  Aligned_cols=141  Identities=11%  Similarity=0.089  Sum_probs=73.1

Q ss_pred             CCCEEEEEeCCCC--ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C-------CeEEEEECCCCeEE
Q 005235          505 RGDYLSTVMPAGE--SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K-------KNIRVYDLLKQRLI  573 (707)
Q Consensus       505 ~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d-------g~I~iwDl~~~~~~  573 (707)
                      ++..++.|+.++.  ...+.+||+.+..-... ++.....-.+++.. ++.+++.|+ +       ..+.+||+.+.+-.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            5667777775542  24688899887764311 12111111222322 455555543 1       35899999887533


Q ss_pred             EE--EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCCcceEEeecCC---CCEEEEEEcCCCCEEEEEeC
Q 005235          574 KK--LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLSSKPYRVLKCHP---KDITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       574 ~~--l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~~~~~~~l~~h~---~~I~~vafspdg~llaSgs~  643 (707)
                      ..  +........++.+  ++..++.|+.+     ..+.+||+.+.  ....+....   .....+.  -++.+++.|+.
T Consensus       187 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~  260 (302)
T 2xn4_A          187 YIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN--AWRQVADMNMCRRNAGVCA--VNGLLYVVGGD  260 (302)
T ss_dssp             EECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred             ECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCC--CEeeCCCCCCccccCeEEE--ECCEEEEECCc
Confidence            22  2222122233333  57777888764     36889998764  233332111   1111222  25677777775


Q ss_pred             CC-----cEEEEec
Q 005235          644 DC-----TAYVFHG  652 (707)
Q Consensus       644 Dg-----~I~Vwd~  652 (707)
                      ++     .|.+||.
T Consensus       261 ~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          261 DGSCNLASVEYYNP  274 (302)
T ss_dssp             CSSSBCCCEEEEET
T ss_pred             CCCcccccEEEEcC
Confidence            53     4777754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.20  E-value=10  Score=43.69  Aligned_cols=216  Identities=12%  Similarity=0.077  Sum_probs=124.5

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLE-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~-~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      ..|..|+.+| +..||..+++...... ....|.++.. .++  .|.+++.+ .|..++..+...               
T Consensus        74 g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g--~lWigt~~-Gl~~~~~~~~~~---------------  133 (758)
T 3ott_A           74 TYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD--TLWLGALN-GLYTYQLQSRKL---------------  133 (758)
T ss_dssp             TEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT--EEEEEETT-EEEEEETTTCCE---------------
T ss_pred             CcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC--cEEEEcCC-cceeEeCCCCeE---------------
Confidence            3566777666 7788988765432100 1335777654 355  46666554 677787654321               


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeec-----cCCCe
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFK-----LHGLP  542 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~-----~~~~V  542 (707)
                                ..+...  .   .......|.++....+|...+. +. +   .|..++..+.........     ....|
T Consensus       134 ----------~~~~~~--~---~~l~~~~i~~i~~d~~g~lWig-t~-~---Gl~~~~~~~~~~~~~~~~~~~~~~~~~i  193 (758)
T 3ott_A          134 ----------TSFDTR--R---NGLPNNTIYSIIRTKDNQIYVG-TY-N---GLCRYIPSNGKFEGIPLPVHSSQSNLFV  193 (758)
T ss_dssp             ----------EEECHH--H---HCCSCSCEEEEEECTTCCEEEE-ET-T---EEEEEETTTTEEEEECCCCCTTCSSCCE
T ss_pred             ----------EEeccC--C---CCcCCCeEEEEEEcCCCCEEEE-eC-C---CHhhCccCCCceEEecCCCcccccccee
Confidence                      111000  0   0011345778888778876654 33 2   577788776554311121     12347


Q ss_pred             EEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec-
Q 005235          543 VSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC-  621 (707)
Q Consensus       543 ~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~-  621 (707)
                      .++...+++..|.+|+++.|..||..+++...........|.++....+|.+.+ |+.+ -|.+++..+. . +..+.. 
T Consensus       194 ~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~-~-~~~~~~~  269 (758)
T 3ott_A          194 NSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTT-P-LQHIIHD  269 (758)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTS-C-CEEECCC
T ss_pred             EEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCC-c-EEEEEcC
Confidence            888888877777777766789999887754322111234588888887776554 5544 5888887654 2 333321 


Q ss_pred             -------CCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          622 -------HPKDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       622 -------h~~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                             ....|.++....+|.+.+ |+..| +.++
T Consensus       270 ~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~  303 (758)
T 3ott_A          270 SRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLS  303 (758)
T ss_dssp             TTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEE
T ss_pred             CCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccc
Confidence                   124589998888887554 44456 5444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.81  E-value=0.74  Score=48.17  Aligned_cols=186  Identities=8%  Similarity=0.009  Sum_probs=95.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEEEEEEc--c-CCCccEEEE--EeCCeEEEEECCCCCchhcccccce
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIG--EAIQYVAWN--P-LPELPVLAV--SVGQDVLILNTGLGNEEEQRRVKDL  461 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~--~~V~~v~~s--p-dg~~~lla~--s~d~~V~lwd~~~~~~~~~~~~~~v  461 (707)
                      .+++.++.||.|.-.|..+|+.+.+++..  .++....-.  + ++  .++++  ..||.|..++..+|           
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~--~~~vv~p~~dG~l~a~~~~~G-----------   77 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETY--ETLIIEPFGDGNIYYFNAHQG-----------   77 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSS--EEEEECCSTTTEEEEEETTTE-----------
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCC--cEEEEEECCCCEEEEEECCCC-----------
Confidence            47899999999999999999999998874  333321100  1 22  34444  46888888886544           


Q ss_pred             eeecccccccCCCCcEEEEecCCccceEEeccCCCeEE---EEE-----cCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235          462 LHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSS---VEW-----HRRGDYLSTVMPAGESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       462 ~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~---v~~-----sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~  533 (707)
                                     ...|.......    -..+++..   ...     +..+..+++++.++   .+...|+.+++.. 
T Consensus        78 ---------------~~~~~~~~~~l----v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g---~l~ald~~tG~~~-  134 (339)
T 2be1_A           78 ---------------LQKLPLSIRQL----VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRT---IMYTINMLNGEII-  134 (339)
T ss_dssp             ---------------EEEEEEEHHHH----HTTCSEEEECC----------CCEEEEECEEEE---EEEEEETTTCCEE-
T ss_pred             ---------------cEEeeeccccc----eeccccccCCCceeecccccccCCEEEEEecCC---EEEEEECCCCcEE-
Confidence                           12232211100    01111111   000     01355777888877   9999999999887 


Q ss_pred             eeeccCCC--------eEEEEEe-----CCCCEEEEEe-CCeEEEEECCCCeEEEEE-----eCCCCC--e-EEEEEcCC
Q 005235          534 IPFKLHGL--------PVSSVFH-----PTRSIFFVST-KKNIRVYDLLKQRLIKKL-----ETGLKE--V-SSIAIHPA  591 (707)
Q Consensus       534 ~~~~~~~~--------V~~v~fs-----pd~~~l~v~s-dg~I~iwDl~~~~~~~~l-----~~~~~~--I-~sl~~spd  591 (707)
                      ..+.....        ..|....     -.+..++.+. +..|.+.+ ++|+ +..+     ......  + .+-.++.+
T Consensus       135 W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~D  212 (339)
T 2be1_A          135 SAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKD  212 (339)
T ss_dssp             EEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSS
T ss_pred             EEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccC
Confidence            66622211        1112111     1134455554 67777766 4443 2111     111000  0 00001123


Q ss_pred             CCEEEEEECCCcEEEEECCCCC
Q 005235          592 GDNLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       592 g~~L~sGs~Dg~I~vwDl~~~~  613 (707)
                      +.+ ++++.||.|.-+|..++.
T Consensus       213 g~~-~~~~~dg~v~A~d~~~G~  233 (339)
T 2be1_A          213 GMC-IAPFRDKSLLASDLDFRI  233 (339)
T ss_dssp             SCC-EEEETTTEEEEECSTTCC
T ss_pred             CcE-EEECCCCEEEEEECCCCc
Confidence            555 457788888888877663

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.72  E-value=5  Score=40.70  Aligned_cols=133  Identities=8%  Similarity=0.013  Sum_probs=67.0

Q ss_pred             CCCEEEEEeCC-----CCccEEEEEECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe--C-----CeEEEEECCCCe
Q 005235          505 RGDYLSTVMPA-----GESRAIFMHQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST--K-----KNIRVYDLLKQR  571 (707)
Q Consensus       505 ~g~~lat~s~d-----g~~~~V~Iwdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s--d-----g~I~iwDl~~~~  571 (707)
                      ++..++.|+.+     .....+.++|+.+..-.. .++.....-.+++. -++.+++.|+  +     ..+.+||+.+.+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            55666666632     123478899998775431 12211111122233 2445555554  1     469999998874


Q ss_pred             EEEE--EeCCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEE
Q 005235          572 LIKK--LETGLKEVSSIAIHPAGDNLIVGSREG-----KLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASC  641 (707)
Q Consensus       572 ~~~~--l~~~~~~I~sl~~spdg~~L~sGs~Dg-----~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSg  641 (707)
                      -...  +........++.+  ++..++.|+.++     .+.+||+.+.  ....+..-   ......+.+  ++.+++.|
T Consensus       177 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~l~v~G  250 (315)
T 4asc_A          177 WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSLSLVSL--VGTLYAIG  250 (315)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEE
T ss_pred             EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccceeEEEE--CCEEEEEC
Confidence            3321  1111112233333  567788887654     4788898764  23333211   111122222  56777777


Q ss_pred             eCC
Q 005235          642 SDD  644 (707)
Q Consensus       642 s~D  644 (707)
                      +.+
T Consensus       251 G~~  253 (315)
T 4asc_A          251 GFA  253 (315)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.21  E-value=3.7  Score=41.19  Aligned_cols=141  Identities=7%  Similarity=0.040  Sum_probs=74.2

Q ss_pred             CCCEEEEEeCCC--CccEEEEEECCCCc---eee-eeeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeE
Q 005235          505 RGDYLSTVMPAG--ESRAIFMHQLSKKL---SHR-IPFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRL  572 (707)
Q Consensus       505 ~g~~lat~s~dg--~~~~V~Iwdl~~~~---~~~-~~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~  572 (707)
                      ++..++.|+.++  ....+.++|+.+..   -.. .++.....-.+++.. ++.+++.|+ +     ..+.+||+.+.+-
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            566677776543  12478999998876   321 122111111222222 455555554 2     4699999988753


Q ss_pred             EE--EEeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCCcceEEeecC---CCCEEEEEEcCCCCEEEEEe
Q 005235          573 IK--KLETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLSSKPYRVLKCH---PKDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       573 ~~--~l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~~~~~~~l~~h---~~~I~~vafspdg~llaSgs  642 (707)
                      ..  .+........++.+  ++..++.|+.+     ..+.+||+.+. . ...+...   ......+.+  ++.+++.|+
T Consensus       141 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  214 (301)
T 2vpj_A          141 SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG-H-WTNVTPMATKRSGAGVALL--NDHIYVVGG  214 (301)
T ss_dssp             EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT-E-EEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC-c-EEeCCCCCcccccceEEEE--CCEEEEEeC
Confidence            32  22222222233333  67777887765     45889998764 2 2322211   111122222  567777777


Q ss_pred             CC-----CcEEEEec
Q 005235          643 DD-----CTAYVFHG  652 (707)
Q Consensus       643 ~D-----g~I~Vwd~  652 (707)
                      .+     ..|.+||.
T Consensus       215 ~~~~~~~~~v~~yd~  229 (301)
T 2vpj_A          215 FDGTAHLSSVEAYNI  229 (301)
T ss_dssp             BCSSSBCCCEEEEET
T ss_pred             CCCCcccceEEEEeC
Confidence            54     35788854

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.91  E-value=5.6  Score=40.65  Aligned_cols=134  Identities=8%  Similarity=0.023  Sum_probs=81.6

Q ss_pred             EEcCCCCEEEEEe--CCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEE
Q 005235          501 EWHRRGDYLSTVM--PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       501 ~~sp~g~~lat~s--~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l  576 (707)
                      .|+++|++|+...  .++ ...|...++...... ....+..    ..|++++..|+-.+  ...|.+.++..+.....+
T Consensus       110 ~~s~~g~~Iy~~~~~~~~-~~~Iy~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~  183 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQT-ATSLYRIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY  183 (302)
T ss_dssp             EEEEETTEEEEEEESSSS-CEEEEEEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE
T ss_pred             EEEEeCCEEEEEeecCCC-CceEEEEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe
Confidence            6778899988776  333 447777777755433 2223322    45678888888766  478888888766543333


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEECC--CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          577 ETGLKEVSSIAIHPAGDNLIVGSRE--GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       577 ~~~~~~I~sl~~spdg~~L~sGs~D--g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      . +  ... ..++|+|.+|+-....  ..|..-+++.+  -...|..  ..+  ..|+|.+.+|.-+++.+.-.|+
T Consensus       184 ~-~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~--~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~  249 (302)
T 3s25_A          184 D-C--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP--NPVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALC  249 (302)
T ss_dssp             C-S--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC--CCEECSC--SCE--EEEEEETTEEEEEECSSSCEEE
T ss_pred             C-C--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCC--CeEEEeC--CCc--ceEEECCCEEEEEECCCCcEEE
Confidence            2 2  222 3467999998877654  35777777644  2444542  233  3478888887766433223444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.88  E-value=6  Score=48.82  Aligned_cols=159  Identities=8%  Similarity=0.106  Sum_probs=89.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc----CCCeEEEEEeCCCCEEEEEe--------CCe
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL----HGLPVSSVFHPTRSIFFVST--------KKN  561 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~----~~~V~~v~fspd~~~l~v~s--------dg~  561 (707)
                      ..|.-=.|-.. +.|+.++..    .|..|++.........| .|    ...|..-..+++.++++..+        .|.
T Consensus       106 e~VvfWkWis~-~~l~lVT~~----aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~  180 (1630)
T 1xi4_A          106 DDVTFWKWISL-NTVALVTDN----AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA  180 (1630)
T ss_pred             CCceEEEecCC-CeeEEEcCC----eEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccce
Confidence            34544456433 334444432    89999997643332344 33    34666777788999877532        378


Q ss_pred             EEEEECCCCeEEEEEeCCCCCeEEEEEc--CC-CCEEEEEEC---CCcEEEEECCCC---Ccce-----EEeec---CCC
Q 005235          562 IRVYDLLKQRLIKKLETGLKEVSSIAIH--PA-GDNLIVGSR---EGKLCWFDMDLS---SKPY-----RVLKC---HPK  624 (707)
Q Consensus       562 I~iwDl~~~~~~~~l~~~~~~I~sl~~s--pd-g~~L~sGs~---Dg~I~vwDl~~~---~~~~-----~~l~~---h~~  624 (707)
                      +.+|....+ ..+.+.+|......+.+.  +. ...++.+..   .+++.|.++...   ..++     ..+-.   -..
T Consensus       181 mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D  259 (1630)
T 1xi4_A          181 MQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND  259 (1630)
T ss_pred             eeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC
Confidence            999988754 334556665444333332  11 123332222   368999998643   1111     11111   112


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCC
Q 005235          625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLN  659 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~  659 (707)
                      --.++..|+...++...+.-|.|++||+.+...+.
T Consensus       260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             cceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence            23466777878888888899999999766544433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.82  E-value=3.8  Score=41.95  Aligned_cols=132  Identities=8%  Similarity=0.040  Sum_probs=76.2

Q ss_pred             cCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--C-------------CeEEEEEC
Q 005235          503 HRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--K-------------KNIRVYDL  567 (707)
Q Consensus       503 sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--d-------------g~I~iwDl  567 (707)
                      +.+|.++....... ...|...+......  ..+..   -.+--|++++.+|+.+.  +             ..|+..++
T Consensus        22 ~~~g~~iy~~n~~d-~~~ly~~~~dg~~~--~~l~~---~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           22 CESDGEVFFSNTND-NGRLYAMNIDGSNI--HKLSN---DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEETTEEEEEEGGG-TTEEEEEETTSCSC--EEEEE---EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEeCCEEEEEeCCC-CceEEEEcCCCCCC--EEccC---CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            34677776665322 23666666655443  23311   12345688898888765  2             35777887


Q ss_pred             CCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE--C--CCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC
Q 005235          568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS--R--EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       568 ~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs--~--Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~  643 (707)
                      ..++. ..+...  .  +..|+++|+.|+-..  .  ...|+..+++.  .....+..+..    .+|++++..|+-.+.
T Consensus        96 dg~~~-~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG--s~~~~lt~~~~----~~~~~~g~~iy~t~~  164 (302)
T 3s25_A           96 NGHGS-TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG--EEKKKIKNHYL----FTCNTSDRYFYYNNP  164 (302)
T ss_dssp             TSCCC-EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTS--CCCEEEESSCC----CCSEEETTEEEEECT
T ss_pred             CCCcc-eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCC--CCeEEEeCCCc----eEeeEECCEEEEEeC
Confidence            76643 233322  1  236778899988776  2  34466666653  33455554433    457888887776654


Q ss_pred             -CCcEEEEe
Q 005235          644 -DCTAYVFH  651 (707)
Q Consensus       644 -Dg~I~Vwd  651 (707)
                       ...|.+.+
T Consensus       165 g~~~Iy~~~  173 (302)
T 3s25_A          165 KNGQLYRYD  173 (302)
T ss_dssp             TTCCEEEEE
T ss_pred             CCceEEEEE
Confidence             45666663

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.62  E-value=13  Score=41.19  Aligned_cols=203  Identities=9%  Similarity=0.041  Sum_probs=114.3

Q ss_pred             cEEEEEe-CCCcEEEEeCCCCeEEEEEec--CCcEEEEEEc--cCCCccEEEEEeCCeEEEEECCCCCch-hccccccee
Q 005235          389 YLEYKGS-TDGTVRIWEVESGRCLRVLEI--GEAIQYVAWN--PLPELPVLAVSVGQDVLILNTGLGNEE-EQRRVKDLL  462 (707)
Q Consensus       389 ~~l~sgs-~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~s--pdg~~~lla~s~d~~V~lwd~~~~~~~-~~~~~~~v~  462 (707)
                      .+++.-. ....|-.-++..-+|-+.++.  ...+.+++|-  |+.. ++++.+.. .|=+  +..+... +.. ... +
T Consensus       143 rylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~-yv~~~~e~-~~P~--pndg~~~~~~~-~~~-y  216 (638)
T 3sbq_A          143 KYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTK-YVFANAEF-IIPH--PNDGKVFDLQD-ENS-Y  216 (638)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCC-EEEEEECS-CEES--SCSSSCCCTTS-TTE-E
T ss_pred             EEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCcc-EEEeccee-eccC--CCCCcccccCC-hhh-c
Confidence            3455443 455677778888888777776  7889999997  5652 55555543 2221  1111100 000 000 1


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC-------------------------
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE-------------------------  517 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~-------------------------  517 (707)
                       ..|.           .-+..+-.........+....+...++|.|.++.|.+..                         
T Consensus       217 -~~f~-----------~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie  284 (638)
T 3sbq_A          217 -TMYN-----------AIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVE  284 (638)
T ss_dssp             -EEEE-----------EEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHH
T ss_pred             -eEEE-----------EEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHH
Confidence             1111           001111111111112334455666777888777776540                         


Q ss_pred             ----------cc--EEEEEECCC----Cceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCC------e-
Q 005235          518 ----------SR--AIFMHQLSK----KLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQ------R-  571 (707)
Q Consensus       518 ----------~~--~V~Iwdl~~----~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~------~-  571 (707)
                                .+  .|.+.|.+.    +... ..+ ........+.++|||+++++++  +.+|.++|+.+.      + 
T Consensus       285 ~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~-~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~  363 (638)
T 3sbq_A          285 AAVKAGDFITLGDSKTPVLDGRKKDGKDSKF-TRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL  363 (638)
T ss_dssp             HHHHTTCCBCCTTCCCCEEECSCBTTBCCSS-EEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC
T ss_pred             HHHhcCCeEEECCCCeeEEccccccccCCce-EEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc
Confidence                      11  345555544    2111 112 4445566788999999999998  799999998741      1 


Q ss_pred             ------EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 005235          572 ------LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDL  611 (707)
Q Consensus       572 ------~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~  611 (707)
                            .+.....+ ......+|.++|....+-.-|..|.-|++..
T Consensus       364 ~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          364 ADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             SCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             cCcccceEeeccCC-CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence                  23344444 3467889999995555566899999999974

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.47  E-value=1.1  Score=46.84  Aligned_cols=142  Identities=11%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             cEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEE
Q 005235          432 PVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLST  511 (707)
Q Consensus       432 ~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat  511 (707)
                      .+++++.||.|.-+|..+|.                          .+|.................     .+.+..++.
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~--------------------------~~W~~~~~~~~p~~~~~~~~-----~~~~~~~~v   60 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGH--------------------------IIWSIEPENFQPLIEIQEPS-----RLETYETLI   60 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTE--------------------------EEEEECGGGSCCSEECCCSC-----TTTSSEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCc--------------------------EEEEecCCccCCcEEecCCc-----cccCCcEEE
Confidence            68888899999999987763                          34554433100000000000     012223333


Q ss_pred             E--eCCCCccEEEEEECCCCceeeeeecc-----CCCeEE---EEE-e----CCCCEEEEEe-CCeEEEEECCCCeEEEE
Q 005235          512 V--MPAGESRAIFMHQLSKKLSHRIPFKL-----HGLPVS---SVF-H----PTRSIFFVST-KKNIRVYDLLKQRLIKK  575 (707)
Q Consensus       512 ~--s~dg~~~~V~Iwdl~~~~~~~~~~~~-----~~~V~~---v~f-s----pd~~~l~v~s-dg~I~iwDl~~~~~~~~  575 (707)
                      +  +.||   .|..++..++... .++..     ..++..   ... .    ..+..+++++ ++.+...|+.+|+.+..
T Consensus        61 v~p~~dG---~l~a~~~~~G~~~-~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A           61 IEPFGDG---NIYYFNAHQGLQK-LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA  136 (339)
T ss_dssp             ECCSTTT---EEEEEETTTEEEE-EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred             EEECCCC---EEEEEECCCCcEE-eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            3  4566   8888887776444 44411     111211   000 0    0344566666 89999999999999999


Q ss_pred             EeCCCCC-------eEEEEEc-----CCCCEEEEEECCCcEEEEE
Q 005235          576 LETGLKE-------VSSIAIH-----PAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       576 l~~~~~~-------I~sl~~s-----pdg~~L~sGs~Dg~I~vwD  608 (707)
                      +......       ..|....     -.+..|+.|..+..+.+.+
T Consensus       137 ~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          137 FGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             ESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred             EecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence            8754211       1122211     1246788888777777766

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.09  E-value=5.1  Score=40.29  Aligned_cols=141  Identities=10%  Similarity=-0.056  Sum_probs=72.3

Q ss_pred             CCCEEEEEeCCC-CccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C------CeEEEEECCCCeEEEE
Q 005235          505 RGDYLSTVMPAG-ESRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K------KNIRVYDLLKQRLIKK  575 (707)
Q Consensus       505 ~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d------g~I~iwDl~~~~~~~~  575 (707)
                      ++..++.|+.+. ....+.++|+.+..-... .+.....-.+++.. ++.+++.|+ +      ..+.+||+.+.+-...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~  133 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK  133 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence            556666666541 234888999988764311 12111111222222 455555554 3      4699999988754322


Q ss_pred             --EeCCCCCeEEEEEcCCCCEEEEEEC---------CCcEEEEECCCCCcceEEeecCC---CCEEEEEEcCCCCEEEEE
Q 005235          576 --LETGLKEVSSIAIHPAGDNLIVGSR---------EGKLCWFDMDLSSKPYRVLKCHP---KDITNVAFHRSYPLFASC  641 (707)
Q Consensus       576 --l~~~~~~I~sl~~spdg~~L~sGs~---------Dg~I~vwDl~~~~~~~~~l~~h~---~~I~~vafspdg~llaSg  641 (707)
                        +........++.+  ++..++.|+.         -..+.+||+.+.  ....+....   ..-..+.+  ++.+++.|
T Consensus       134 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~G  207 (306)
T 3ii7_A          134 PSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV--KDKIFAVG  207 (306)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             CCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE--CCEEEEEe
Confidence              1111112223333  5667777754         345889998765  233332111   11122222  56677777


Q ss_pred             eCC-----CcEEEEec
Q 005235          642 SDD-----CTAYVFHG  652 (707)
Q Consensus       642 s~D-----g~I~Vwd~  652 (707)
                      +.+     ..|.+||.
T Consensus       208 G~~~~~~~~~~~~yd~  223 (306)
T 3ii7_A          208 GQNGLGGLDNVEYYDI  223 (306)
T ss_dssp             CEETTEEBCCEEEEET
T ss_pred             CCCCCCCCceEEEeeC
Confidence            654     35777754

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=92.05  E-value=11  Score=37.90  Aligned_cols=199  Identities=14%  Similarity=0.067  Sum_probs=110.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeC--CCCEEEEEe-CCeEEEEECCC--
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP--TRSIFFVST-KKNIRVYDLLK--  569 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp--d~~~l~v~s-dg~I~iwDl~~--  569 (707)
                      +.+..+.-....++|+..+..|.-..+.+|++........ +.....|..+.. +  +...++.++ +|.|+...+..  
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~  101 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE  101 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCC-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccccc-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence            3455544444556666666666222333444433222112 444556666644 4  456777777 89999988654  


Q ss_pred             ----CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--------CcceEEeecCCCCEEEEEEcCCCCE
Q 005235          570 ----QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS--------SKPYRVLKCHPKDITNVAFHRSYPL  637 (707)
Q Consensus       570 ----~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~--------~~~~~~l~~h~~~I~~vafspdg~l  637 (707)
                          +.....+..+ ..+..+......+.|+..+..|.+..+....-        +...-.|.. ...|.++...+++..
T Consensus       102 ~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~  179 (276)
T 3no0_A          102 YKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY  179 (276)
T ss_dssp             TCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred             hhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence                2222234433 44555555556678999999999999986421        011111222 245666655566678


Q ss_pred             EEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235          638 FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       638 laSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                      ++.++..|.++...+..+.....+..  -+..+ .....    +..+........|+..+..|.+..
T Consensus       180 ll~~T~~G~~kr~~~~e~~~~~R~gk--Gv~~i-~~~~~----lv~~~~~~~~~~i~~~t~~G~~ir  239 (276)
T 3no0_A          180 LLVITAKGRVKKISHEEIPKTNRGVK--GTEVS-GTKDT----LVDLIPIKEEVELLITTKNGKAFY  239 (276)
T ss_dssp             EEEEETTSCEEEEEGGGSCCCCTTCC--CEECC-CSSSC----EEEEEEESSEEEEEEEETTSCEEE
T ss_pred             EEEEeCCCcEEEeEHHHcccCCCCCc--ceEEE-cCCCc----EEEEEEeCCCCEEEEEcCCCeEEE
Confidence            88999999999997765432222211  12222 11122    554444334446666777777654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=91.58  E-value=3.4  Score=41.58  Aligned_cols=105  Identities=11%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             CCCEEEEEeCCCC----ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEE
Q 005235          505 RGDYLSTVMPAGE----SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLI  573 (707)
Q Consensus       505 ~g~~lat~s~dg~----~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~  573 (707)
                      ++..++.|+.++.    ...+.+||+.+..-... ++.....-.+++.. ++.+++.|+ +     ..+.+||+.+.+-.
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence            5666666655432    24688999987755311 12111111222222 455666654 3     46999999887533


Q ss_pred             EE--EeCCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCC
Q 005235          574 KK--LETGLKEVSSIAIHPAGDNLIVGSREG-----KLCWFDMDLS  612 (707)
Q Consensus       574 ~~--l~~~~~~I~sl~~spdg~~L~sGs~Dg-----~I~vwDl~~~  612 (707)
                      ..  +........++.+  ++..++.|+.++     .+.+||+.+.
T Consensus       234 ~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          234 QVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             eCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence            22  1111111223333  567777877653     4788888754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.53  E-value=3.7  Score=41.56  Aligned_cols=105  Identities=10%  Similarity=0.108  Sum_probs=56.5

Q ss_pred             CCCEEEEEeCCCC--ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEEEE
Q 005235          505 RGDYLSTVMPAGE--SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLIKK  575 (707)
Q Consensus       505 ~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~~~  575 (707)
                      ++..++.|+.++.  ...+.++|+.+..-... ++.....-.+++.. ++.+++.|+ +     ..+.+||+.+.+-...
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  199 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI  199 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC
Confidence            5666666654331  23688999887654311 12111111122222 455555554 2     5699999987753321


Q ss_pred             --EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 005235          576 --LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLS  612 (707)
Q Consensus       576 --l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~  612 (707)
                        +........++.+  ++..++.|+.+     ..+.+||+.+.
T Consensus       200 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          200 TAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence              1112122233333  57777888765     45899998764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.40  E-value=3.6  Score=47.43  Aligned_cols=107  Identities=12%  Similarity=0.130  Sum_probs=62.2

Q ss_pred             CCCCEEEEEeCCCCccEEEEEECCCCceeeee----e-ccCCCeEEEEEeCC-CCEEEEEe---C-----CeEEEEECCC
Q 005235          504 RRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP----F-KLHGLPVSSVFHPT-RSIFFVST---K-----KNIRVYDLLK  569 (707)
Q Consensus       504 p~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~----~-~~~~~V~~v~fspd-~~~l~v~s---d-----g~I~iwDl~~  569 (707)
                      .++..++.|+.++.. .+.+||..+..-....    . .......++++... +.+++.|+   +     ..+.+||+.+
T Consensus       499 ~~~~iyv~GG~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~  577 (695)
T 2zwa_A          499 PDGNVLILGGVTEGP-AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA  577 (695)
T ss_dssp             TTSCEEEECCBCSSC-SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred             cCCEEEEECCCCCCC-CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence            378888888876644 7999999887653211    1 11222334566655 55555554   2     4589999988


Q ss_pred             CeE-----EEEEeC----CCCCeEEEEEcCCCCEEEEEECC--------CcEEEEECCCC
Q 005235          570 QRL-----IKKLET----GLKEVSSIAIHPAGDNLIVGSRE--------GKLCWFDMDLS  612 (707)
Q Consensus       570 ~~~-----~~~l~~----~~~~I~sl~~spdg~~L~sGs~D--------g~I~vwDl~~~  612 (707)
                      ..-     -..+..    ...... ++...++..++.|+.+        ..|.+||+.+.
T Consensus       578 ~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          578 ENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             TCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             CccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            761     122211    111223 3333337778888753        45889998764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.01  E-value=2.3  Score=44.01  Aligned_cols=123  Identities=7%  Similarity=-0.047  Sum_probs=54.6

Q ss_pred             cEEEEEECCCCceeee-eeccCCCe-EEEEEeCCCCEEEEEe-------CCeEEEEEC--CCCeEEE--EEeCCCCCeEE
Q 005235          519 RAIFMHQLSKKLSHRI-PFKLHGLP-VSSVFHPTRSIFFVST-------KKNIRVYDL--LKQRLIK--KLETGLKEVSS  585 (707)
Q Consensus       519 ~~V~Iwdl~~~~~~~~-~~~~~~~V-~~v~fspd~~~l~v~s-------dg~I~iwDl--~~~~~~~--~l~~~~~~I~s  585 (707)
                      ..+.+||+.+..-... ++...... .+++.. ++.+++.|+       ...+.+||+  .+.+-..  .+........+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            4899999988765311 12211111 233333 445555543       245778887  4443221  11111111111


Q ss_pred             EEEcCCCCEEEEEECC----------------------CcEEEEECCCCC-cceEEeecCCCCEEEEEEcCCCCEEEEEe
Q 005235          586 IAIHPAGDNLIVGSRE----------------------GKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       586 l~~spdg~~L~sGs~D----------------------g~I~vwDl~~~~-~~~~~l~~h~~~I~~vafspdg~llaSgs  642 (707)
                      .+...++..++.|+.+                      ..+.+||+.+.. ..+..+......-.+  ..-++.+++.|+
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG  324 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGG  324 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEee
Confidence            1222356777777642                      247789987542 112222211111122  223667777777


Q ss_pred             CC
Q 005235          643 DD  644 (707)
Q Consensus       643 ~D  644 (707)
                      .+
T Consensus       325 ~~  326 (357)
T 2uvk_A          325 ET  326 (357)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.66  E-value=15  Score=36.93  Aligned_cols=143  Identities=11%  Similarity=0.078  Sum_probs=71.0

Q ss_pred             cCCCCEEEEEeC----CCC----ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C--------CeEEE
Q 005235          503 HRRGDYLSTVMP----AGE----SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K--------KNIRV  564 (707)
Q Consensus       503 sp~g~~lat~s~----dg~----~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d--------g~I~i  564 (707)
                      ..++..++.|+.    ++.    ...+.++|..+..-... ++.....-.+++.. ++.+++.|+ +        ..+.+
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~  121 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMC  121 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEE
Confidence            346777777773    111    12478888887654311 11111111122222 445555544 1        46999


Q ss_pred             EECCCCeEEE--EEeCCCCCeEEEEEcCCCCEEEEEEC-C-----CcEEEEECCCCCcceEEeecC---CCCEEEEEEcC
Q 005235          565 YDLLKQRLIK--KLETGLKEVSSIAIHPAGDNLIVGSR-E-----GKLCWFDMDLSSKPYRVLKCH---PKDITNVAFHR  633 (707)
Q Consensus       565 wDl~~~~~~~--~l~~~~~~I~sl~~spdg~~L~sGs~-D-----g~I~vwDl~~~~~~~~~l~~h---~~~I~~vafsp  633 (707)
                      ||+.+.+-..  .+........++.  -++..++.|+. +     ..+.+||+.+.  ....+...   ...-.++.+  
T Consensus       122 ~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--  195 (315)
T 4asc_A          122 YDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--  195 (315)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--
T ss_pred             ECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--
Confidence            9998875322  1111111222333  35667777776 2     45889998764  12222211   111122222  


Q ss_pred             CCCEEEEEeCCC-----cEEEEec
Q 005235          634 SYPLFASCSDDC-----TAYVFHG  652 (707)
Q Consensus       634 dg~llaSgs~Dg-----~I~Vwd~  652 (707)
                      ++.+++.|+.++     .+.+||.
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~  219 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSI  219 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEET
T ss_pred             CCEEEEEeccCCCCccceEEEEEC
Confidence            667777777654     4666743

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=90.51  E-value=18  Score=37.40  Aligned_cols=206  Identities=10%  Similarity=0.049  Sum_probs=112.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC--ceeeee------eccCCCeEEEEEeC---CCCEEEEEe-CCe
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK--LSHRIP------FKLHGLPVSSVFHP---TRSIFFVST-KKN  561 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~--~~~~~~------~~~~~~V~~v~fsp---d~~~l~v~s-dg~  561 (707)
                      ...+..+......+.|+..+..|.--.+.+|++...  .....+      +.....|.++..-+   +..+++.++ +|.
T Consensus        41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~  120 (327)
T 3uc1_A           41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGL  120 (327)
T ss_dssp             GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred             CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence            445555555556667777776662233444555432  111122      23345666665443   466777777 899


Q ss_pred             EEEEECCC-------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC--CC---Ccc---eE--EeecCCC
Q 005235          562 IRVYDLLK-------QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD--LS---SKP---YR--VLKCHPK  624 (707)
Q Consensus       562 I~iwDl~~-------~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~--~~---~~~---~~--~l~~h~~  624 (707)
                      |+...+..       +.....+..+ ..+..+......+.|+..+..|.+..|...  .-   .+.   .+  .|. ...
T Consensus       121 iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d  198 (327)
T 3uc1_A          121 VKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDD  198 (327)
T ss_dssp             EEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTC
T ss_pred             EEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCC
Confidence            99988653       2222234443 345555444566788899999999999876  21   110   11  122 234


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 005235          625 DITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL  704 (707)
Q Consensus       625 ~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Irl  704 (707)
                      .|.++...+.+..|+.++..|.++.-.+..+.....+........+..-...    +..+........|+..+.+|.+.-
T Consensus       199 ~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~----lv~~~~~~~~~~i~l~T~~G~~ir  274 (327)
T 3uc1_A          199 RLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR----LVGALIVDDDSELYAVTSGGGVIR  274 (327)
T ss_dssp             CEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS----EEEEEEECTTCEEEEEEGGGCEEE
T ss_pred             EEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe----EEEEEEeCCCccEEEEcCCCeEEE
Confidence            5777766666678899999999998876644322121111111112111111    444444444456666666666544


Q ss_pred             E
Q 005235          705 Y  705 (707)
Q Consensus       705 W  705 (707)
                      +
T Consensus       275 ~  275 (327)
T 3uc1_A          275 T  275 (327)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.67  E-value=33  Score=39.34  Aligned_cols=293  Identities=11%  Similarity=0.028  Sum_probs=152.3

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcc---------cc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQR---------RV  458 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~---------~~  458 (707)
                      ..+..|.. +-|..++..+++....... ...|.++....+|  .|.+++ ++-+.+++..+.......         ..
T Consensus       203 ~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~  278 (758)
T 3ott_A          203 QCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG--DLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTN  278 (758)
T ss_dssp             TEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC--CEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSC
T ss_pred             CEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC--CEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCc
Confidence            34455553 3477888887764322111 4568888888888  577777 456888887654321110         01


Q ss_pred             cceeeeccc----ccccCCCCcEEEEecCCccceEEe------ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC
Q 005235          459 KDLLHVETP----TAPDDNMASIVSWLQHDKLDGIRL------RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK  528 (707)
Q Consensus       459 ~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~~------~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~  528 (707)
                      ..+.++..-    +..+...| +..............      .....|.++.-..+|...+.. .+    .+..++..+
T Consensus       279 ~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~~----Gl~~~~~~~  352 (758)
T 3ott_A          279 NIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-AN----GLIRFTDPA  352 (758)
T ss_dssp             SCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-TT----EEEEESCTT
T ss_pred             CeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-CC----cceeecccc
Confidence            112222110    22222223 222211111100000      112457888887788765543 32    466666554


Q ss_pred             Cceee-eeec--------cCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEe-C-----CCCCeEEEEEcCCCC
Q 005235          529 KLSHR-IPFK--------LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLE-T-----GLKEVSSIAIHPAGD  593 (707)
Q Consensus       529 ~~~~~-~~~~--------~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~-~-----~~~~I~sl~~spdg~  593 (707)
                      +.... ..+.        ....|.++.-..++.+- +|+++.|..||..+++...-.. .     ....|.++...++| 
T Consensus       353 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-  430 (758)
T 3ott_A          353 GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG-  430 (758)
T ss_dssp             SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS-
T ss_pred             cccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC-
Confidence            32110 1121        12357888887777654 4557789999998876543211 1     12458888887766 


Q ss_pred             EEEEEECCCcEEEEECCCC----Ccce---EEeec----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCC
Q 005235          594 NLIVGSREGKLCWFDMDLS----SKPY---RVLKC----HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNP  662 (707)
Q Consensus       594 ~L~sGs~Dg~I~vwDl~~~----~~~~---~~l~~----h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~  662 (707)
                      .|.+|+..+-|.++|..+.    ...+   ..+..    ....|.++...++|.+.+.++..+-|..++..      +..
T Consensus       431 ~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~------~~~  504 (758)
T 3ott_A          431 QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPR------TRE  504 (758)
T ss_dssp             EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETT------TTE
T ss_pred             CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCC------CCc
Confidence            5666887777889986521    0111   11111    12358999999999977644444457777532      221


Q ss_pred             cccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          663 LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY  705 (707)
Q Consensus       663 ~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlW  705 (707)
                          +..+..........+.++....+|.+.++. ..| |..|
T Consensus       505 ----~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~  541 (758)
T 3ott_A          505 ----VTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRI  541 (758)
T ss_dssp             ----EEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEE
T ss_pred             ----eEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEE
Confidence                122211100001127777777777755443 444 4444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=89.54  E-value=19  Score=36.28  Aligned_cols=105  Identities=9%  Similarity=0.067  Sum_probs=54.7

Q ss_pred             CCCEEEEEeCC--C--CccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe--C-----CeEEEEECCCCeE
Q 005235          505 RGDYLSTVMPA--G--ESRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST--K-----KNIRVYDLLKQRL  572 (707)
Q Consensus       505 ~g~~lat~s~d--g--~~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s--d-----g~I~iwDl~~~~~  572 (707)
                      ++..++.|+.+  +  ....+.++|+.+..-... ++.....-.+++. .++.+++.|+  +     ..+.+||+.+.+-
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            56666666653  1  124688889887654311 1111111112222 3455555553  1     4599999988753


Q ss_pred             EEE--EeCCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCC
Q 005235          573 IKK--LETGLKEVSSIAIHPAGDNLIVGSREG-----KLCWFDMDLS  612 (707)
Q Consensus       573 ~~~--l~~~~~~I~sl~~spdg~~L~sGs~Dg-----~I~vwDl~~~  612 (707)
                      ...  +........++.+  ++..++.|+.++     .+.+||+.+.
T Consensus       188 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          188 KDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence            322  1111122233333  567777776543     4678888764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.20  E-value=8.3  Score=38.87  Aligned_cols=105  Identities=9%  Similarity=0.043  Sum_probs=55.9

Q ss_pred             CCCEEEEEeCCCC--ccEEEEEECCCCceeee-eeccCCCeEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCeEEEE
Q 005235          505 RGDYLSTVMPAGE--SRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVST-K-----KNIRVYDLLKQRLIKK  575 (707)
Q Consensus       505 ~g~~lat~s~dg~--~~~V~Iwdl~~~~~~~~-~~~~~~~V~~v~fspd~~~l~v~s-d-----g~I~iwDl~~~~~~~~  575 (707)
                      ++..++.|+.++.  ...+.++|+.+..-... .+.....-.+++.. ++.+++.|+ +     ..+.+||+.+.+-...
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence            5666777765542  24788999887754311 11111111222223 455666654 3     5699999988753321


Q ss_pred             --EeCCCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 005235          576 --LETGLKEVSSIAIHPAGDNLIVGSRE-----GKLCWFDMDLS  612 (707)
Q Consensus       576 --l~~~~~~I~sl~~spdg~~L~sGs~D-----g~I~vwDl~~~  612 (707)
                        +........++.+  ++..++.|+.+     ..+.+||+.+.
T Consensus       247 ~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          247 APMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence              1111112233333  56777777754     34677777653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.76  E-value=6.1  Score=43.08  Aligned_cols=119  Identities=14%  Similarity=0.107  Sum_probs=63.8

Q ss_pred             CCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC--CcceEEee---------cCCCCEEEEEEcCC----CCEEEEEeC
Q 005235          580 LKEVSSIAIHPAGD-NLIVGSREGKLCWFDMDLS--SKPYRVLK---------CHPKDITNVAFHRS----YPLFASCSD  643 (707)
Q Consensus       580 ~~~I~sl~~spdg~-~L~sGs~Dg~I~vwDl~~~--~~~~~~l~---------~h~~~I~~vafspd----g~llaSgs~  643 (707)
                      -.....|+|.|+|. .|+++...|.|++++.+..  ..++..+.         .....+..|+|+|+    +.++++-+.
T Consensus        13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            34568999999996 5666678899999975422  12333222         11356889999997    444444332


Q ss_pred             --CC--------cEEEEeccccc---CCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          644 --DC--------TAYVFHGMVYS---DLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       644 --Dg--------~I~Vwd~~~~~---Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                        ++        ..+|..+....   +.........+..+....  .......|+|.|||.+.++.|..+
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~--~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH--RKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS--SSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC--CcccCCcEeECCCCcEEEEeCCCC
Confidence              11        13443322211   110000001122222100  011278899999998777777543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.65  E-value=44  Score=36.19  Aligned_cols=30  Identities=10%  Similarity=-0.106  Sum_probs=24.5

Q ss_pred             CcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235          418 EAIQYVAWNPLPELPVLAVSVGQDVLILNT  447 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~  447 (707)
                      ...+.|+|.|+|...++++...|.|++++.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~   43 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTP   43 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence            566899999998335888899999999864

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=85.57  E-value=29  Score=34.75  Aligned_cols=122  Identities=7%  Similarity=-0.038  Sum_probs=54.0

Q ss_pred             EEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCC-CeEEEEEeCCCCCeEEEEEcCCCCEEEEE
Q 005235          520 AIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK-QRLIKKLETGLKEVSSIAIHPAGDNLIVG  598 (707)
Q Consensus       520 ~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~-~~~~~~l~~~~~~I~sl~~spdg~~L~sG  598 (707)
                      .|..|-.........+......|..++...... ++.. +|.|..|-... +++- .-......|..++..  ..+.++-
T Consensus        82 ~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs-~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G--~~~~~~l  156 (282)
T 3qhy_B           82 EVIAWGGNEDGQTTVPAEARSGVDAIAAGAWAS-YALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGG--VYTALAV  156 (282)
T ss_dssp             EEEEEECCTTSTTCCCGGGSSSEEEEEEETTEE-EEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEEC--SSEEEEE
T ss_pred             EEEEeeCCCCCCCCCCcccCCCeEEEECcCCEE-EEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcc--cCEEEEE
Confidence            666666543322212333334566666554432 3334 77777776543 1110 000111335555543  2233333


Q ss_pred             ECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          599 SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       599 s~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      + ||.|+.|-.....++- .-..-...|..|+...... +|.  .||.|..|=
T Consensus       157 ~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG  204 (282)
T 3qhy_B          157 K-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWG  204 (282)
T ss_dssp             E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEE
T ss_pred             E-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEE-EEE--ECCeEEEEE
Confidence            3 6777777654322211 0001123466665543322 222  477777773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	707
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.001
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.9 bits (211), Expect = 8e-19
 Identities = 40/283 (14%), Positives = 90/283 (31%), Gaps = 27/283 (9%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
            S D T+++W+ E+G   R L+                 + + S    + + +       
Sbjct: 35  ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 94

Query: 454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIR--------LRHFKMVSSVEWHRR 505
                 D         P+ +     S  +  K+  ++          H + V  V  ++ 
Sbjct: 95  RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 154

Query: 506 GDYLSTV------------------MPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVF 547
           G  +++                           +     + + S+    +  G       
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214

Query: 548 HPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWF 607
            P   +   S  K I+++D+     +  L      V  +  H  G  ++  + +  L  +
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274

Query: 608 DMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650
           D   + +  + L  H   +T++ FH++ P   + S D T  V+
Sbjct: 275 DYK-NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 7e-08
 Identities = 38/216 (17%), Positives = 78/216 (36%), Gaps = 20/216 (9%)

Query: 395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE 454
           S D T+++WEV++G C++    G         P  +  ++A S   D  +    +  +E 
Sbjct: 120 SRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIA-SCSNDQTVRVWVVATKEC 177

Query: 455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP 514
           +  +++  HV    +     +                       + +  + G +L +   
Sbjct: 178 KAELREHRHVVECISWAPESSYSSIS------------EATGSETKKSGKPGPFLLS--- 222

Query: 515 AGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV-FHPTRSIFF-VSTKKNIRVYDLLKQRL 572
               + I M  +S  +        H   V  V FH         +  K +RV+D   +R 
Sbjct: 223 GSRDKTIKMWDVSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

Query: 573 IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608
           +K L      V+S+  H     ++ GS +  +  ++
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 13/80 (16%)

Query: 613 SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG 672
                 L  H   +T V FH  + +  S S+D T  V+      D            L+G
Sbjct: 7   PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW------DYETGDFE---RTLKG 57

Query: 673 HTSSNGRGVMDCKFHPRQPW 692
           HT S    V D  F      
Sbjct: 58  HTDS----VQDISFDHSGKL 73

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 9e-04
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 14/127 (11%)

Query: 581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS 640
             V+ +  HP    ++  S +  +  +D + +    R LK H   + +++F  S  L AS
Sbjct: 18  SPVTRVIFHPVFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 641 CSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700
           CS D T  ++    +                     +   V      P    + +A  D 
Sbjct: 77  CSADMTIKLWDFQGFEC-------------IRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 701 VIRLYCH 707
            I+++  
Sbjct: 124 TIKMWEV 130

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
              P       L GH S     V    FHP    + +A  D+ I+++
Sbjct: 2   EWIPRPPEKYALSGHRSP----VTRVIFHPVFSVMVSASEDATIKVW 44

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 3e-16
 Identities = 45/310 (14%), Positives = 88/310 (28%), Gaps = 29/310 (9%)

Query: 409 RCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP 467
           R  R L      I  + W     L    VS  QD  ++        +   +         
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRL---LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102

Query: 468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLS 527
            A   +   +      +      L+  +    V     G                +    
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162

Query: 528 ---------KKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKN--IRVYDLLKQRLIKKL 576
                    +       F  H   V S+     +  FVS   +   +++D+ +    +  
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD-ITNVAFHRSY 635
                ++++I   P G+    GS +     FD+    +       +    IT+V+F +S 
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 636 PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFT 695
            L  +  DD    V+  +               +L GH +     V           + T
Sbjct: 283 RLLLAGYDDFNCNVWDALKAD---------RAGVLAGHDNR----VSCLGVTDDGMAVAT 329

Query: 696 AGADSVIRLY 705
              DS ++++
Sbjct: 330 GSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 9e-13
 Identities = 32/269 (11%), Positives = 76/269 (28%), Gaps = 12/269 (4%)

Query: 394 GSTDGTVRIWEVESGRCLRVLE-IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE 452
            S DG + IW+  +   +  +      +   A+ P               +         
Sbjct: 73  ASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132

Query: 453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTV 512
               R               +   IV+           +   +  ++   H       ++
Sbjct: 133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192

Query: 513 MPAGESRAIFMHQLSKKL------SHRIPFKLHGLPVSSV-FHPTRSIFFVSTKKN---I 562
            P            S KL        R  F  H   ++++ F P  + F   +      +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252

Query: 563 RVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH 622
                 ++ +    +  +  ++S++   +G  L+ G  +     +D    +    VL  H
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL-KADRAGVLAGH 311

Query: 623 PKDITNVAFHRSYPLFASCSDDCTAYVFH 651
              ++ +         A+ S D    +++
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 1/95 (1%)

Query: 557 STKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY 616
               NI     ++ R  + L   L ++ ++        L+  S++GKL  +D   ++   
Sbjct: 32  QITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-TTNKV 90

Query: 617 RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH 651
             +      +   A+  S    A    D    +++
Sbjct: 91  HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.8 bits (187), Expect = 2e-15
 Identities = 54/390 (13%), Positives = 115/390 (29%), Gaps = 62/390 (15%)

Query: 365 NIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRV-----LEIGEA 419
           N      KP  P   DL    V   L  K  T+    ++     R + V     L+    
Sbjct: 7   NQRANHSKPIPPFLLDLDSQSVPDAL--KKQTNDYYILYNPALPREIDVELHKSLDHTSV 64

Query: 420 IQYVAWNPLPELPVLAVSVGQDVLILNTG-------LGNEEEQRRVKDLLHVETPTAPDD 472
           +  V ++   E   LA    +   +           L ++    +  + L+  +  + D 
Sbjct: 65  VCCVKFSNDGEY--LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122

Query: 473 NMASI----------------VSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG 516
            + S+                +  +   +   I +        +           ++   
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182

Query: 517 ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFV-STKKNIRVYDLLKQRLIKK 575
             R + +  L             G+   +V           S  + +RV+D     L+++
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242

Query: 576 LETGLK-------EVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY-----------R 617
           L++  +        V S+     G +++ GS +  +  +++  ++               
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302

Query: 618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS- 676
               H   + +VA  ++     S S D     +      D        PL +L+GH +S 
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW------DKKSG---NPLLMLQGHRNSV 353

Query: 677 -NGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
            +          P      T   D   R++
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 7e-14
 Identities = 38/307 (12%), Positives = 87/307 (28%), Gaps = 14/307 (4%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGE-AIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE 452
           GS D T+++W   +G+CLR L      +          + +   +     +         
Sbjct: 33  GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECI 90

Query: 453 EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTV 512
                    +             S  + L+   ++  +  H  M               V
Sbjct: 91  HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV 150

Query: 513 MPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRL 572
           +       + +     + +     + H   V S+      +   S   +IRV+D+     
Sbjct: 151 VSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 209

Query: 573 IKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFH 632
           I  L       S + +    + L+ G+ +  +  +D+        +   +          
Sbjct: 210 IHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 267

Query: 633 RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW 692
            +     + SDD T  ++      DL     I    ++   +  +G  V   +    +  
Sbjct: 268 FNKNFVITSSDDGTVKLW------DLKTGEFIR--NLVTLESGGSGGVVWRIRASNTKLV 319

Query: 693 LFTAGAD 699
                 +
Sbjct: 320 CAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 33/305 (10%), Positives = 84/305 (27%), Gaps = 22/305 (7%)

Query: 403 WEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQD--VLILNTGLGNEEEQRRVKD 460
           W     +  +VL+  +                 VS   D  + + +   G          
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGN---RIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRA 520
                +    +  ++                    +       R        + +G   A
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 521 IFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGL 580
                  +          H   V  V +  R +   +    ++V+D   +  +  L+   
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG-- 175

Query: 581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS 640
                 ++   G +++ GS +  +  +D++ +      L  H    + +    +     S
Sbjct: 176 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVE-TGNCIHTLTGHQSLTSGMELKDNI--LVS 232

Query: 641 CSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS 700
            + D T  ++      D+     +  L+    H S              + ++ T+  D 
Sbjct: 233 GNADSTVKIW------DIKTGQCLQTLQGPNKHQS------AVTCLQFNKNFVITSSDDG 280

Query: 701 VIRLY 705
            ++L+
Sbjct: 281 TVKLW 285

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (156), Expect = 6e-12
 Identities = 36/312 (11%), Positives = 85/312 (27%), Gaps = 50/312 (16%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
           G  D T++IW+  +  C R+L  G     +       + +                    
Sbjct: 31  GLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQYDERVII-------------------- 69

Query: 454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM 513
                                +     +       +         +V   R  + +    
Sbjct: 70  ------------------TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTC 111

Query: 514 PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLI 573
               S A++       ++ R     H   V+ V    + I   S  + I+V++      +
Sbjct: 112 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV 171

Query: 574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR 633
           + L    + +    +      ++ GS +  +  +D++       +      +        
Sbjct: 172 RTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIE---CGACLRVLEGHEELVRCIRF 226

Query: 634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL 693
                 S + D    V+  +   D       + L  L  H+      V   +F      +
Sbjct: 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR----VFRLQFDEF--QI 280

Query: 694 FTAGADSVIRLY 705
            ++  D  I ++
Sbjct: 281 VSSSHDDTILIW 292

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 35/323 (10%), Positives = 77/323 (23%), Gaps = 30/323 (9%)

Query: 395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE 454
             D  +        R +  L  GE +  V  +       +       V + +      + 
Sbjct: 29  PPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH--VYTGGKGCVKVWDISHPGNKS 86

Query: 455 QRRVKDLLHVETP-----TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL 509
                D L+ +         PD     +        +  +     ++ + +       Y 
Sbjct: 87  PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 146

Query: 510 STVMPAGESRAIFMHQLSKKLSHRIPF-------KLHGLPVSSVFHPTRSIFFVSTKKNI 562
             + P  +         +  +                            +  +     N 
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206

Query: 563 RVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH 622
                L++    +      ++ S+   P G+ L VG          + ++      L  H
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS--NVEVLHVNKPDKYQLHLH 264

Query: 623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVM 682
              + ++ F      F S   D     +             I         +SS    V+
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAW------RTPYGASIFQS----KESSS----VL 310

Query: 683 DCKFHPRQPWLFTAGADSVIRLY 705
            C       ++ T   D    +Y
Sbjct: 311 SCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 16/118 (13%), Positives = 39/118 (33%), Gaps = 8/118 (6%)

Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV-FHPT- 550
               + S+ +   G++L+  M +     + +++       +    LH   V S+ F    
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-----PDKYQLHLHESCVLSLKFAYCG 277

Query: 551 RSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD 608
           +          +  +       I + +     V S  I      ++ GS + K   ++
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 3/34 (8%), Positives = 9/34 (26%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNP 427
              D  +  W    G  +   +   ++     + 
Sbjct: 283 TGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.0 bits (133), Expect = 7e-09
 Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 1/117 (0%)

Query: 579 GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVAFHRSYPL 637
            ++ +S  A +     + +     ++  ++   +       LK H   +T V +      
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 638 FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF 694
             +C  D  AYV+     +      ++      R    +            R   + 
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGV 681
             + I+  A+++     A C ++   +++      + + N   V +  L+ H       V
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIY------EKSGNKW-VQVHELKEHNGQ----V 54

Query: 682 MDCKFHPRQPWLFTAGADSVIRLYCH 707
               + P    + T G D    ++  
Sbjct: 55  TGVDWAPDSNRIVTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 30/256 (11%), Positives = 65/256 (25%), Gaps = 17/256 (6%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGE---AIQYVAWNPLPELPVLAVSVGQDVLILNTGLG 450
              +  V I+E    + ++V E+ E    +  V W P     ++     ++  +      
Sbjct: 25  CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR-IVTCGTDRNAYVWTLKGR 83

Query: 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLS 510
             +    +  +           N            +              +  ++    +
Sbjct: 84  TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 143

Query: 511 TVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQ 570
            +       ++ +   S     RI F  +   V     PT     +              
Sbjct: 144 VLSLDWHPNSVLLAAGSCDFKCRI-FSAYIKEVEERPAPTPWGSKMPF-----------G 191

Query: 571 RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVA 630
            L+ +  +    V  +     G  +   S +  +C  D D        L      +  V 
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD-KKMAVATLASETLPLLAVT 250

Query: 631 FHRSYPLFASCSDDCT 646
           F     L A+  D   
Sbjct: 251 FITESSLVAAGHDCFP 266

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.1 bits (125), Expect = 5e-08
 Identities = 28/267 (10%), Positives = 73/267 (27%), Gaps = 11/267 (4%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIG--EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN 451
              +G +  W++ +G   RV        I  +      +L  ++       ++   G G 
Sbjct: 30  ADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS-WDDHLKVVPAGGSGV 88

Query: 452 EEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGI-------RLRHFKMVSSVEWHR 504
           +  +     L       A   +    V+                  + +     ++   +
Sbjct: 89  DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK 148

Query: 505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRV 564
           +   +           +    +S+  +   P ++  +  S+      +           V
Sbjct: 149 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 208

Query: 565 YDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD-LSSKPYRVLKCHP 623
            +  +            +V+ ++  P    L  GS +  +  ++M+  S  P  +   H 
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 624 KDITNVAFHRSYPLFASCSDDCTAYVF 650
               N     +     S   D     +
Sbjct: 269 MSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 13/65 (20%), Positives = 22/65 (33%)

Query: 581 KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS 640
           K +++++    G  L     EG +  +D+            H   IT +       LF  
Sbjct: 13  KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV 72

Query: 641 CSDDC 645
             DD 
Sbjct: 73  SWDDH 77

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (121), Expect = 1e-07
 Identities = 26/266 (9%), Positives = 69/266 (25%), Gaps = 15/266 (5%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
           GS DG +  W   S            I  +  +   E    ++S    + +         
Sbjct: 27  GSYDGRIMEWSSSSMHQDH----SNLIVSLDNSKAQEY--SSISWDDTLKVNGITKHEFG 80

Query: 454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM 513
            Q +V    +        ++   ++       +      +    +               
Sbjct: 81  SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEG 140

Query: 514 PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSS--------VFHPTRSIFFVSTKKNIRVY 565
              +   +   ++S  L   +  K   + +S                ++ + +++     
Sbjct: 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR 200

Query: 566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD 625
              +   I  +     E  +       D +  GS +  +  + +    K  + L  H   
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 260

Query: 626 ITNVAFHRSYPLFASCSDDCTAYVFH 651
           + N+ +        S   D     ++
Sbjct: 261 VNNLLWETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 31/309 (10%), Positives = 75/309 (24%), Gaps = 36/309 (11%)

Query: 407 SGRCLRVLEIG--EAIQYVAWNPLPELPVLAVSVGQD--VLILNTGLGNEEEQRRVKDLL 462
               L+ +  G  + I  +  NPL       +S   D  ++  ++   +++    +  L 
Sbjct: 2   HDEVLKTIS-GHNKGITALTVNPL-------ISGSYDGRIMEWSSSSMHQDHSNLIVSL- 52

Query: 463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIF 522
                 +     +SI            +            +  G                
Sbjct: 53  ----DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 108

Query: 523 MHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRL------IKKL 576
                 K               +                +   ++              +
Sbjct: 109 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 168

Query: 577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP 636
                E    A    G  L+   +  ++        +     +   P +           
Sbjct: 169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228

Query: 637 LFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTA 696
           L A+ S D   +++       + +      ++ L  H      GV +  +      L ++
Sbjct: 229 LVATGSLDTNIFIY------SVKRPM--KIIKALNAHKD----GVNNLLWETPS-TLVSS 275

Query: 697 GADSVIRLY 705
           GAD+ I+ +
Sbjct: 276 GADACIKRW 284

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 22/330 (6%), Positives = 62/330 (18%), Gaps = 43/330 (13%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGN 451
            +    + + +V S    +   +            P      +  +   D+  ++     
Sbjct: 14  TNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 73

Query: 452 EEEQRRV--KDLLHVETP--------------TAPDDNMASIVSWLQHDKLDGIRLRHFK 495
                 +         +               T       +    ++  +L+        
Sbjct: 74  NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 133

Query: 496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF 555
               V        +  +  A +                      G    ++     +   
Sbjct: 134 EAKPVRTFPMPRQVYLMRAADDGSLYVAGP-----DIYKMDVKTGKYTVALPLRNWNRKG 188

Query: 556 VSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP 615
            S    +  +     R            +         +             D+      
Sbjct: 189 YSAPDVLYFWPHQSPR-----HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243

Query: 616 YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS 675
            +      +           P       +  A         DL Q  LI          +
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKY-------DLKQRKLI--------KAA 288

Query: 676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
           +         F  +   L+  G  + + ++
Sbjct: 289 NLDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 6e-07
 Identities = 25/262 (9%), Positives = 60/262 (22%), Gaps = 20/262 (7%)

Query: 388 CYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNT 447
                 GS D T+ +W++     +           V   P      + V  G    +   
Sbjct: 108 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 167

Query: 448 GLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGD 507
                       D   +    A    +      L           +              
Sbjct: 168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYI----LSGHTDRIYSTIYDHERKRCISASMDT 223

Query: 508 YLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDL 567
            +             +   +  +          +  ++            ++K    +  
Sbjct: 224 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT- 282

Query: 568 LKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT 627
                          +S+I      DN++V   E +   +++      +  +      I 
Sbjct: 283 --------------NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328

Query: 628 NVAFHRSYPLFASCSDDCTAYV 649
           +V F     L A+   D  +++
Sbjct: 329 SVNFKGKT-LVAAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 21/162 (12%), Positives = 46/162 (28%), Gaps = 1/162 (0%)

Query: 532 HRIPFKLHGLPVSSVFHPTRSIFFVSTK-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHP 590
            R   + H   V +      +        K IRVYD + ++ + +L      V ++    
Sbjct: 4   QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 591 AGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650
            G  +   +      W                     ++  +++     + S D T +V+
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW 692
                S +  +       ++      N   V   + H     
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 28/312 (8%), Positives = 76/312 (24%), Gaps = 32/312 (10%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
           G+ D  +R+++  + + L  L   +              V A+      ++++       
Sbjct: 29  GADDKMIRVYDSINKKFLLQLSGHDG------------GVWALKYAHGGILVSGSTDRTV 76

Query: 454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM 513
               +K           +  +  +      +    +       +    W    +      
Sbjct: 77  RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDH 134

Query: 514 PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLI 573
                  +  H   +        + H   V +V      +   S    + V+D+ + + +
Sbjct: 135 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL 194

Query: 574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR 633
             L                 + I      +     MD + + + +               
Sbjct: 195 YILSG---------HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL 693
              L  S     +A     +   D N               S +   +           +
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYS---------RKFSYHHTNLSAITTFYVSDNI 296

Query: 694 FTAGADSVIRLY 705
             +G+++   +Y
Sbjct: 297 LVSGSENQFNIY 308

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 8e-07
 Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 10/94 (10%)

Query: 614 KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH 673
           +  ++ +     I+++    S  L    S D +  V+        +     V L     +
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY------KFDIQAKNVDLLQSLRY 55

Query: 674 TSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH 707
                  ++ C F          G      L   
Sbjct: 56  KHP----LLCCNFIDNTDLQIYVGTVQGEILKVD 85

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 8e-06
 Identities = 32/306 (10%), Positives = 72/306 (23%), Gaps = 41/306 (13%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEI----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL 449
            S DG++ +++ +       L         +    +        + V   Q  ++    +
Sbjct: 29  TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLI 87

Query: 450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSV--------- 500
           G+   Q    +  ++            +++      ++ I  R++               
Sbjct: 88  GSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147

Query: 501 -------EWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPT--R 551
                          L   M   + +   +              L          P    
Sbjct: 148 KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE 207

Query: 552 SIFFVSTKKNIRVYDL---------------LKQRLIKKLETGLKEVSSIAIHPAGDNLI 596
                S    + V                     RL  K       V+SI   P    L 
Sbjct: 208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY 267

Query: 597 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYS 656
               +G +  +++    K     K +    + V    S  +    + D T    +  +  
Sbjct: 268 TAGSDGIISCWNLQTRKKIKNFAKFNE--DSVVKIACSDNILCLATSDDTFKT-NAAIDQ 324

Query: 657 DLNQNP 662
            +  N 
Sbjct: 325 TIELNA 330

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 583 VSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC--HPKDITNVAFHRSYPLFAS 640
           +S I I P+   L++ S +G L  +  D+ +K   +L+   +   +    F  +  L   
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 641 CSDDCTAYVFHGM 653
                   +   +
Sbjct: 74  VGTVQGEILKVDL 86

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 38/345 (11%), Positives = 80/345 (23%), Gaps = 47/345 (13%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIG-------------EAIQYVAWNPLPELPVLAVSVGQ 440
            S DG +++W+ +        +               + +Q +  +      V   S   
Sbjct: 30  CSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 89

Query: 441 DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSV 500
           D+L       +E ++   + L  +++        A  + W   +  D +           
Sbjct: 90  DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA--LKWGASN--DRLLSHRLVATDVK 145

Query: 501 EWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKK 560
                  +      +      +   L  + +   P        S        I       
Sbjct: 146 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNG 205

Query: 561 NIRV------YDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM----- 609
            +++        L        +      + S+   P G  L +           +     
Sbjct: 206 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 265

Query: 610 ----------DLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLN 659
                       SS+       H   + +++F+ S     S   D     +      D+ 
Sbjct: 266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW------DVK 319

Query: 660 QNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRL 704
               I     L  H                   L   G   V  L
Sbjct: 320 TKERI---TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 361

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 2/88 (2%)

Query: 618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSN 677
             K H  DI +V+   S+    SCS D    V+   +  + N         + +      
Sbjct: 9   AGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 678 GRGVMDCKFHPRQPWLFTAGADSVIRLY 705
                  +       + T      +  Y
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFY 94

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 29/323 (8%), Positives = 76/323 (23%), Gaps = 29/323 (8%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
            +      + + E+GR + +++ G            +   +A +      I      +  
Sbjct: 24  FAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVA--DDGSFIAHASTVFSRIARGERTDYV 80

Query: 454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM 513
           E      LL       PD     + ++     L               +++     +  +
Sbjct: 81  EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL-------FYQFSPAPAVGV 133

Query: 514 PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVS--TKKNIRVYDLLKQR 571
              E +A           H  P          +     S+  V+  T+    +       
Sbjct: 134 VDLEGKAFKRMLDVPDCYHIFP---TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 190

Query: 572 LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLKCHPKDITNVA 630
              +       ++  A       L+  +  GK+   D+     K    ++   +      
Sbjct: 191 PEDEF-----LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 245

Query: 631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL------RGHTSSNGRGVMDC 684
           +        +                +         + +L      R      G  +   
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSI 305

Query: 685 KFHP--RQPWLFTAGADSVIRLY 705
                 +      +  D  + ++
Sbjct: 306 NVSQDEKPLLYALSTGDKTLYIH 328

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 29/285 (10%), Positives = 75/285 (26%), Gaps = 48/285 (16%)

Query: 392 YKGSTDGTVRIWEVESGRCLRVLEIGEAIQY--------VAWNPLPELPVLA-VSVGQDV 442
            +G     V +++  +      +E+ +A ++         +  P  +  +    S    V
Sbjct: 72  ARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 131

Query: 443 LILNTGLGNEEEQRRVKDLLHVETPT-------APDDNMASIVSW----LQHDKLDGIRL 491
            +++      +    V D  H+             D ++A +        +    +    
Sbjct: 132 GVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP 191

Query: 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV----- 546
               +++   + ++   L  V P    +   +   S         +       +      
Sbjct: 192 EDEFLINHPAYSQKAGRL--VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG 249

Query: 547 -----------------FHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIH 589
                                      +  + + V D      + K E G  E+ SI + 
Sbjct: 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVS 308

Query: 590 PAGDNLIV--GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFH 632
                L+    + +  L   D + S +  R +         +   
Sbjct: 309 QDEKPLLYALSTGDKTLYIHDAE-SGEELRSVNQLGHGPQVITTA 352

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 12/160 (7%), Positives = 36/160 (22%), Gaps = 1/160 (0%)

Query: 534 IPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD 593
           +P    G  V     P           ++    +      +       + +     P+G 
Sbjct: 12  LPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY 71

Query: 594 NLIVGSREGKLCWFDMDLS-SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652
               G   G +  +D   +       +      + ++++       A+  +    +    
Sbjct: 72  YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131

Query: 653 MVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW 692
           +  +  +   L      +        R             
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 171

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQD 441
            S D T++IW V + +  + + +G  I+      +     L VS+  +
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL-VSISAN 302

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 556 VSTKKNIRVYDLLKQRLIKKLETGLK-EVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
            S  K I+++++   ++ K +  G + E   + I      L+  S  G + + + +
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 25/312 (8%), Positives = 58/312 (18%), Gaps = 39/312 (12%)

Query: 395 STDGTVRIWEVESGRCLRVL-EIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
               +V    V S     +  E          +P         S      +         
Sbjct: 35  CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY---CASGDVHGNVRIWDTTQTT 91

Query: 454 EQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVM 513
              +    +          +  S       +  +           +   +  G   +   
Sbjct: 92  HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151

Query: 514 PAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLI 573
              +    F        +    F+       S F                          
Sbjct: 152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA------ 205

Query: 574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR 633
                     +         N + G++ G      +            H   +  + +  
Sbjct: 206 ---------STGGDGTIVLYNGVDGTKTGVFEDDSLKN--------VAHSGSVFGLTWSP 248

Query: 634 SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL 693
                AS S D T  ++      ++    +    + +   T               +  L
Sbjct: 249 DGTKIASASADKTIKIW------NVATLKVE---KTIPVGTRIE---DQQLGIIWTKQAL 296

Query: 694 FTAGADSVIRLY 705
            +  A+  I   
Sbjct: 297 VSISANGFINFV 308

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 19/272 (6%), Positives = 51/272 (18%), Gaps = 53/272 (19%)

Query: 366 IDPETLKPK------LPSRKDLKPYPVACYLEYKGST-------DGTVRIWEVESGRCLR 412
            DP T  P          R  + P           +                V      +
Sbjct: 101 FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ 160

Query: 413 VLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT---- 468
           + +          +P         S    +   +                  +  +    
Sbjct: 161 LTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA 217

Query: 469 ---------APDDNMASIVSWLQHDKLDGIRLRHF-KMVSSVEWHRRGDYLSTVMPAGES 518
                        +                 +        +  +   G  +   +   + 
Sbjct: 218 QANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277

Query: 519 RAIFMHQL-----------------SKKLSHRIPFKLHGLPVSSVFHPT-RSIFFVSTK- 559
             I   +                    + S  I         + +      S  + ++  
Sbjct: 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASDNYANSAG 335

Query: 560 -KNIRVYDLLKQRLIKKLETGLKEVSSIAIHP 590
            + + +YD    +    +E   K   S+++  
Sbjct: 336 TEVLDIYDAASDQDQSSVELD-KGPESLSVQN 366

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 21/253 (8%), Positives = 66/253 (26%), Gaps = 39/253 (15%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQY--------VAWNPLPELPVLAVSVGQDVLIL 445
           G     V +++  +   +  +E+ +A ++        +         +  +        L
Sbjct: 92  GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL 151

Query: 446 NTGLGNEEEQRRVKDLLHVETPT-------APDDNMASIVSWLQHDKLDGIRLRHFKM-- 496
           +    ++++  +     H+           +   ++A+            +  +      
Sbjct: 152 SVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211

Query: 497 --VSSVEWHRRGDYLST------VMPAGESRAIFMHQLSKKLSHRIP--FKLHGLPVSSV 546
               + + +  G  +              + A     +    S R    F+  G  + + 
Sbjct: 212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271

Query: 547 FHPTRSIFFVSTKK---------NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIV 597
              T  I  ++ +          N         +    +  G  +  +I     G +   
Sbjct: 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNY 330

Query: 598 --GSREGKLCWFD 608
              +    L  +D
Sbjct: 331 ANSAGTEVLDIYD 343

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 33/353 (9%), Positives = 82/353 (23%), Gaps = 51/353 (14%)

Query: 369 ETLKPKLPSRKDLKPYPVAC-----YLEYKGSTDGTVRIWEVESGRCLRVLEI----GEA 419
           + + P  PS +      ++       + Y       VR  +    +   V++        
Sbjct: 6   KEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSV 65

Query: 420 IQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVS 479
           +  V ++P+     L  S  +   ++  G   ++E                         
Sbjct: 66  VTTVKFSPIKGSQYLC-SGDESGKVIVWGWTFDKES------------------------ 100

Query: 480 WLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIF----MHQLSKKLSHRIP 535
                 +          +S + W   G  L  V    ++  +F          ++S    
Sbjct: 101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160

Query: 536 FKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNL 595
                    S    + ++    +    +          +        V  +   P     
Sbjct: 161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 220

Query: 596 IVGSREGKLCWF---DMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG 652
           ++     +             K     +   +             FA+   D T  V+  
Sbjct: 221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW-- 278

Query: 653 MVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
               D+  +  +   +         G   +          + +   D  +  Y
Sbjct: 279 ----DVTTSKCV---QKWTLDKQQLGNQQVGVVATG-NGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 9e-04
 Identities = 24/243 (9%), Positives = 64/243 (26%), Gaps = 27/243 (11%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEI---------GEAIQYVAWNPLPELPVLAVSVGQDVLI 444
           G   G V +W     +    +E+            I  ++W+       +      +  +
Sbjct: 83  GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV 142

Query: 445 LNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRL------------- 491
             +                +             ++      +   +              
Sbjct: 143 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 202

Query: 492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTR 551
           +    V  VE+          + +    + F  +  + L +    +              
Sbjct: 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 262

Query: 552 SIFFV--STKKNIRVYDLLKQRLIKKL--ETGLKEVSSIAIHPAGDNLIV-GSREGKLCW 606
           S  F        IRV+D+   + ++K   +        + +   G+  I+  S +G L +
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 607 FDM 609
           +++
Sbjct: 323 YEL 325

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 30/316 (9%), Positives = 77/316 (24%), Gaps = 20/316 (6%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLG 450
            +    + + + E     +V+ I   G         P   +    V+  + ++ ++   G
Sbjct: 7   PARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG 66

Query: 451 NEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLS 510
               +  +                    +   ++    + L HF++  +       + LS
Sbjct: 67  ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS 126

Query: 511 TVMPAGESRAIFMHQLSKKLSHRI-PFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK 569
                   R I M   ++  S      +   +               S +        + 
Sbjct: 127 RRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL 186

Query: 570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNV 629
               +   +G+            D     +    L   D++      R ++       + 
Sbjct: 187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST 246

Query: 630 AFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR 689
           A + +        +   ++        DL +N  I                         
Sbjct: 247 AVNPAKTRAFGAYNVLESF--------DLEKNASI--------KRVPLPHSYYSVNVSTD 290

Query: 690 QPWLFTAGADSVIRLY 705
              ++  GA   +  Y
Sbjct: 291 GSTVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 23/259 (8%), Positives = 62/259 (23%), Gaps = 43/259 (16%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQY------VAWNPLPELPVLAVSVGQDVLILNT 447
            +   ++   ++ +G  L  +++    +        A +P  +   +  S  +  L    
Sbjct: 52  VNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111

Query: 448 GLGNEEEQRRVKDLLHVETPTAPDDNMASIVS----------------------WLQHDK 485
                      + L   +   AP        +                       ++   
Sbjct: 112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKP 171

Query: 486 LDGIRLRHFKMVSSVEWHRRGDY--------------LSTVMPAGESRAIFMHQLSKKLS 531
           +       +     +    + +               +    P      +    L     
Sbjct: 172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231

Query: 532 HRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA 591
                ++  +   S                +  +DL K   IK++        S+ +   
Sbjct: 232 AMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLP-HSYYSVNVSTD 290

Query: 592 GDNLIVGSREGKLCWFDMD 610
           G  + +G   G L  +D +
Sbjct: 291 GSTVWLGGALGDLAAYDAE 309

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 25/264 (9%), Positives = 62/264 (23%), Gaps = 7/264 (2%)

Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE- 452
            S    + + +V S +    + +G        +P      +A +   DV I++T   N  
Sbjct: 8   NSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI 67

Query: 453 ---EEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL 509
                    + +              +  +    D          K   S          
Sbjct: 68  ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG 127

Query: 510 STVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLK 569
             +              +   +      +   P      P  +  +V+   ++ +  +  
Sbjct: 128 KKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187

Query: 570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHP--KDIT 627
                     ++   S             +   K       + +   ++    P   D  
Sbjct: 188 VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPA 247

Query: 628 NVAFHR-SYPLFASCSDDCTAYVF 650
            +A       ++ + S   T  V 
Sbjct: 248 GIAVTPDGKKVYVALSFCNTVSVI 271

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 14/113 (12%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 551 RSIFFVSTK--KNIRVYDLL---KQRLIKKLETGLKEVSSIAIHPAGDNLIVGSR-EGKL 604
           +   ++++   + I V++L       L + ++    +V  + + P    L VG R E ++
Sbjct: 3   KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVP-GQVQPMVVSPDKRYLYVGVRPEFRV 61

Query: 605 CWFDMDLSSKPYRVLK--CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVY 655
             + +               P  +T+++           S +        +  
Sbjct: 62  LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED 114

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.6 bits (86), Expect = 0.004
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 363 RVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQY 422
           +V + PE    K  +  DL                G + + + +S + ++V++ G A+  
Sbjct: 12  KVLVKPEDRPKKQLNDLDLPNLFSVT-----LRDAGQIALVDGDSKKIVKVIDTGYAVHI 66

Query: 423 VAWNP 427
              + 
Sbjct: 67  SRMSA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	707
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.73
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.65
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.54
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.5
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.22
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.15
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.15
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.99
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.97
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.85
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.82
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.82
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.75
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.72
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.69
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.68
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.68
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.67
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.65
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.59
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.5
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.36
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.31
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.04
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.83
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.71
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.69
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.48
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.37
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.15
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.85
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.47
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.24
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.19
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.9
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.8
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.51
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.4
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.25
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.23
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.07
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.04
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.8
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.38
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.37
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.09
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.05
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.99
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.55
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.37
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.7
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.72
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.69
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	83.56
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	81.14
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.03

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-35  Score=301.95  Aligned_cols=265  Identities=19%  Similarity=0.255  Sum_probs=236.2

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .+|+|||.||+|+|||+.+++++.++.. .+.|.+++|+|++ ..+++++.++.+.+|+......               
T Consensus        30 ~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------   93 (317)
T d1vyhc1          30 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFEC---------------   93 (317)
T ss_dssp             SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSSCE---------------
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccc-cccccccccccccccccccccc---------------
Confidence            4899999999999999999999999987 8899999999999 3666677777888877554321               


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                         ......|...+.++.|+++++++++++.|+   .+.+|++.++... ..+ .+...+.+++
T Consensus        94 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~  150 (317)
T d1vyhc1          94 -------------------IRTMHGHDHNVSSVSIMPNGDHIVSASRDK---TIKMWEVQTGYCV-KTFTGHREWVRMVR  150 (317)
T ss_dssp             -------------------EECCCCCSSCEEEEEECSSSSEEEEEETTS---EEEEEETTTCCEE-EEEECCSSCEEEEE
T ss_pred             -------------------ccccccccccceeeeccCCCceEEeeccCc---ceeEeecccceee-eEEccCCCcceeee
Confidence                               112457889999999999999999999988   9999999999887 777 8899999999


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC--------------------CEEEEEECCCcEE
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG--------------------DNLIVGSREGKLC  605 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg--------------------~~L~sGs~Dg~I~  605 (707)
                      |+|++.+|++++ |+.|++|++.+++.+..+..+...+.+++++|++                    .++++|+.|+.|+
T Consensus       151 ~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             cccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence            999999999998 8999999999999999999999999999998853                    4799999999999


Q ss_pred             EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEE
Q 005235          606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCK  685 (707)
Q Consensus       606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~  685 (707)
                      +||+.++ +++.++.+|...|++++|+|++++|++|+.||.|+||      |+.+..   ++..+.+|...    |++++
T Consensus       231 ~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw------d~~~~~---~~~~~~~h~~~----V~~~~  296 (317)
T d1vyhc1         231 MWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW------DYKNKR---CMKTLNAHEHF----VTSLD  296 (317)
T ss_dssp             EEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEE------CCTTSC---CCEEEECCSSC----EEEEE
T ss_pred             EEECCCC-cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEE------ECCCCc---EEEEEcCCCCC----EEEEE
Confidence            9999987 7899999999999999999999999999999999999      444443   47889999987    99999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEe
Q 005235          686 FHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       686 fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      |+|++++|+|||.||+|+||+
T Consensus       297 ~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         297 FHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECSSSSCEEEEETTSEEEEEC
T ss_pred             EcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-35  Score=309.97  Aligned_cols=264  Identities=14%  Similarity=0.182  Sum_probs=222.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeE---EEEEe---cCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRC---LRVLE---IGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~---l~~l~---~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      .+|++|+ ||+|+|||+.++..   +..+.   +.+.|.+|+|+|++ ..|++++.|+.|++|++......         
T Consensus        64 ~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iwd~~~~~~~---------  132 (337)
T d1gxra_          64 RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPR---------  132 (337)
T ss_dssp             SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--E---------
T ss_pred             CEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-CEEEEeecccccccccccccccc---------
Confidence            4899987 89999999986532   22222   26789999999999 47888889999999997653211         


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL  541 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~  541 (707)
                                             ....+..|...|.+++|+|++.++++++.++   .|.+|++.++... ..+ .+...
T Consensus       133 -----------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~~~~~~~~~~~-~~~~~~~~~  185 (337)
T d1gxra_         133 -----------------------IKAELTSSAPACYALAISPDSKVCFSCCSDG---NIAVWDLHNQTLV-RQFQGHTDG  185 (337)
T ss_dssp             -----------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE-EEECCCSSC
T ss_pred             -----------------------ccccccccccccccccccccccccccccccc---ccccccccccccc-ccccccccc
Confidence                                   0113557889999999999999999999988   9999999998877 666 88999


Q ss_pred             eEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235          542 PVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       542 V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~  620 (707)
                      |.+++|++++..+++++ |+.|++||+.+++.+..+. +...|.+++|+|++.+|++|+.|+.|++||+..+ . .....
T Consensus       186 v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~-~-~~~~~  262 (337)
T d1gxra_         186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-D-KYQLH  262 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-C-EEEEC
T ss_pred             cccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccc-c-ccccc
Confidence            99999999999999998 8999999999999887775 6688999999999999999999999999999876 3 34567


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCC
Q 005235          621 CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADS  700 (707)
Q Consensus       621 ~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg  700 (707)
                      .|...|++++|+|++++|++|+.||+|+||+.      .++..   +..+ +|...    |.+++|+|++++|++||.||
T Consensus       263 ~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~------~~~~~---~~~~-~~~~~----v~~~~~s~d~~~l~t~s~D~  328 (337)
T d1gxra_         263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT------PYGAS---IFQS-KESSS----VLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEET------TTCCE---EEEE-ECSSC----EEEEEECTTSCEEEEEETTS
T ss_pred             ccccccceEEECCCCCEEEEEeCCCeEEEEEC------CCCCE---EEEc-cCCCC----EEEEEEeCCCCEEEEEeCCC
Confidence            89999999999999999999999999999954      33333   4444 45555    99999999999999999999


Q ss_pred             cEEEEeC
Q 005235          701 VIRLYCH  707 (707)
Q Consensus       701 ~IrlWdl  707 (707)
                      +|+||+|
T Consensus       329 ~I~vWdl  335 (337)
T d1gxra_         329 KATVYEV  335 (337)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.6e-34  Score=300.72  Aligned_cols=275  Identities=13%  Similarity=0.071  Sum_probs=226.1

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccccee
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      +...+..++.++ ++.|.+|++.++.....+.. .+.|++++|+|+| ..|++++.|++|+||++..+....        
T Consensus        25 ~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~~~~~--------   94 (311)
T d1nr0a1          25 NTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTHIL--------   94 (311)
T ss_dssp             ECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTCCE--------
T ss_pred             EcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCC-CeEeccccCceEeeeeeecccccc--------
Confidence            455566666665 55799999999988888876 7899999999999 478888899999999987653210        


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL  541 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~  541 (707)
                                              ...+..|...|.+++|+|++++|++++.+. .+.+.||++.++... ..+ .|...
T Consensus        95 ------------------------~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~-~~~~~v~~~~~~~~~-~~l~~h~~~  148 (311)
T d1nr0a1          95 ------------------------KTTIPVFSGPVKDISWDSESKRIAAVGEGR-ERFGHVFLFDTGTSN-GNLTGQARA  148 (311)
T ss_dssp             ------------------------EEEEECSSSCEEEEEECTTSCEEEEEECCS-SCSEEEEETTTCCBC-BCCCCCSSC
T ss_pred             ------------------------ccccccccCccccccccccccccccccccc-ccccccccccccccc-ccccccccc
Confidence                                    112457899999999999999999998654 447999999998877 777 88999


Q ss_pred             eEEEEEeCCCCE-EEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe
Q 005235          542 PVSSVFHPTRSI-FFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL  619 (707)
Q Consensus       542 V~~v~fspd~~~-l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l  619 (707)
                      |.+++|+|++++ |++|+ |+.|++||+++++....+..|...|++++|+|++++|++|+.|+.|++||+..+ .....+
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~-~~~~~~  227 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVF  227 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEC
T ss_pred             cccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccc-cccccc
Confidence            999999999986 56666 899999999999999999999999999999999999999999999999999876 444444


Q ss_pred             e-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCE
Q 005235          620 K-------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPW  692 (707)
Q Consensus       620 ~-------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~  692 (707)
                      .       +|...|++++|+|++++|++|+.||+|+|||+      .++.   +++++..|... ...+.++.|  ++.+
T Consensus       228 ~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~------~t~~---~~~~l~~~~~~-~~~~~~~~~--~~~~  295 (311)
T d1nr0a1         228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV------ATLK---VEKTIPVGTRI-EDQQLGIIW--TKQA  295 (311)
T ss_dssp             BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEET------TTTE---EEEEEECCSSG-GGCEEEEEE--CSSC
T ss_pred             cccccccccccccccccccCCCCCEEEEEeCCCeEEEEEC------CCCc---EEEEEECCCCc-cceEEEEEe--cCCE
Confidence            3       68899999999999999999999999999954      4443   36777776542 011445555  5567


Q ss_pred             EEEEeCCCcEEEEeC
Q 005235          693 LFTAGADSVIRLYCH  707 (707)
Q Consensus       693 L~s~g~Dg~IrlWdl  707 (707)
                      |++++.||.|++||+
T Consensus       296 l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         296 LVSISANGFINFVNP  310 (311)
T ss_dssp             EEEEETTCCEEEEET
T ss_pred             EEEEECCCEEEEEeC
Confidence            999999999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-33  Score=299.03  Aligned_cols=266  Identities=17%  Similarity=0.199  Sum_probs=220.4

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-------------------CCcEEEEEEccCCCccEEEEEeCCeEEEEECCC
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-------------------GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGL  449 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-------------------~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~  449 (707)
                      .+|++|+ |++|+||++.+++++..+..                   ...|.+|+|+|++ ..|++++.|+.|++|+...
T Consensus        75 ~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~  152 (388)
T d1erja_          75 EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIEN  152 (388)
T ss_dssp             SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC-Ccceecccccccccccccc
Confidence            4899986 89999999999998877643                   4569999999999 4788889999999999765


Q ss_pred             CCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235          450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK  529 (707)
Q Consensus       450 ~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~  529 (707)
                      +..                                  .....+|...|.+++|++++..+++++.++   .+++||+.+.
T Consensus       153 ~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~  195 (388)
T d1erja_         153 RKI----------------------------------VMILQGHEQDIYSLDYFPSGDKLVSGSGDR---TVRIWDLRTG  195 (388)
T ss_dssp             TEE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTT
T ss_pred             ccc----------------------------------ccccccccccccccccccccccccccccce---eeeeeecccc
Confidence            421                                  113457899999999999999999999988   9999999988


Q ss_pred             ceeeeeeccCCCeEEEEEeC-CCCEEEEEe-CCeEEEEECCCCeEEEEEe-------CCCCCeEEEEEcCCCCEEEEEEC
Q 005235          530 LSHRIPFKLHGLPVSSVFHP-TRSIFFVST-KKNIRVYDLLKQRLIKKLE-------TGLKEVSSIAIHPAGDNLIVGSR  600 (707)
Q Consensus       530 ~~~~~~~~~~~~V~~v~fsp-d~~~l~v~s-dg~I~iwDl~~~~~~~~l~-------~~~~~I~sl~~spdg~~L~sGs~  600 (707)
                      ... ....+.....++.|++ ++.+|++++ |+.|++||+.++..+..+.       +|...|.+++|+|+|.+|++|+.
T Consensus       196 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  274 (388)
T d1erja_         196 QCS-LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  274 (388)
T ss_dssp             EEE-EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccc-cccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            776 5554455555666655 788899888 8999999999987776653       56788999999999999999999


Q ss_pred             CCcEEEEECCCCC-----------cceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEE
Q 005235          601 EGKLCWFDMDLSS-----------KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEI  669 (707)
Q Consensus       601 Dg~I~vwDl~~~~-----------~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~  669 (707)
                      ||.|++||+....           ........|...|++++|+|++++|++|+.||+|+|||+      .++.   ++..
T Consensus       275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~------~~~~---~~~~  345 (388)
T d1erja_         275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK------KSGN---PLLM  345 (388)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET------TTCC---EEEE
T ss_pred             CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEEC------CCCc---EEEE
Confidence            9999999997542           234456678999999999999999999999999999954      3443   4789


Q ss_pred             eeCCCCCCCCCeeEEEE------cCCCCEEEEEeCCCcEEEEeC
Q 005235          670 LRGHTSSNGRGVMDCKF------HPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       670 l~gh~~~~~~gV~~l~f------spdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +.+|...    |.++++      +|++.+|||||.||+|+||++
T Consensus       346 l~~H~~~----V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         346 LQGHRNS----VISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             EECCSSC----EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EeCCCCC----EEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            9999987    999875      678999999999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-32  Score=285.42  Aligned_cols=268  Identities=16%  Similarity=0.209  Sum_probs=225.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETP  467 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~  467 (707)
                      .+|++|+.||+|+|||+.+++++..+.. ...|.+++|+|++ ..+++++.++.+.+|+........             
T Consensus        68 ~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~-------------  133 (340)
T d1tbga_          68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNV-------------  133 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCSCC-------------
T ss_pred             CEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccc-eeeeeecccceeeccccccccccc-------------
Confidence            4899999999999999999999999987 8899999999999 478888899999999976542110             


Q ss_pred             ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEE
Q 005235          468 TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSV  546 (707)
Q Consensus       468 ~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~  546 (707)
                                       .....+.+|.......... .+..++....+.   ....+........ ... .....+....
T Consensus       134 -----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~  191 (340)
T d1tbga_         134 -----------------RVSRELAGHTGYLSCCRFL-DDNQIVTSSGDT---TCALWDIETGQQT-TTFTGHTGDVMSLS  191 (340)
T ss_dssp             -----------------CEEEEECCCSSCEEEEEEE-ETTEEEEEETTT---EEEEEETTTTEEE-EEEECCSSCEEEEE
T ss_pred             -----------------ccceecccccccccccccc-cccccccccccc---ccccccccccccc-ccccccceeEeeec
Confidence                             0011234566555555544 456677777777   8888888777665 444 7788899999


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEe--ecCC
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVL--KCHP  623 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l--~~h~  623 (707)
                      +.+.+.++++++ |+.|++||+.+++++.++.+|...|++++|+|+|.+|++|+.||.|++||+... .....+  ..|.
T Consensus       192 ~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~~~  270 (340)
T d1tbga_         192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDNII  270 (340)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCC
T ss_pred             cccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc-cccccccccccc
Confidence            999999999988 899999999999999999999999999999999999999999999999999876 445444  3566


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 005235          624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIR  703 (707)
Q Consensus       624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~Ir  703 (707)
                      ..|++++|+|++++|++|+.||+|+|||+      .+..   ++..+.+|...    |++++|+|++++|+|||.||+|+
T Consensus       271 ~~i~~~~~s~~~~~l~~g~~dg~i~iwd~------~~~~---~~~~~~~H~~~----V~~l~~s~d~~~l~s~s~Dg~v~  337 (340)
T d1tbga_         271 CGITSVSFSKSGRLLLAGYDDFNCNVWDA------LKAD---RAGVLAGHDNR----VSCLGVTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             SCEEEEEECSSSCEEEEEETTSCEEEEET------TTCC---EEEEECCCSSC----EEEEEECTTSSCEEEEETTSCEE
T ss_pred             CceEEEEECCCCCEEEEEECCCEEEEEEC------CCCc---EEEEEcCCCCC----EEEEEEeCCCCEEEEEccCCEEE
Confidence            78999999999999999999999999954      3443   47899999987    99999999999999999999999


Q ss_pred             EEe
Q 005235          704 LYC  706 (707)
Q Consensus       704 lWd  706 (707)
                      |||
T Consensus       338 iWd  340 (340)
T d1tbga_         338 IWN  340 (340)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.7e-33  Score=286.07  Aligned_cols=267  Identities=15%  Similarity=0.175  Sum_probs=211.4

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      .+|++|+.||+|+|||+.++++++.+..  ...|++++|+|++  .+++++.|+.+++|+.......             
T Consensus        25 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g--~~~~~~~d~~v~~~~~~~~~~~-------------   89 (299)
T d1nr0a2          25 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSGVD-------------   89 (299)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSSSC-------------
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc--eeecccceeeEEEeccCCcccc-------------
Confidence            4899999999999999999999988754  7889999999999  6899999999999987543211             


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEE
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV  546 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~  546 (707)
                                        ........+...+.+++|+++|.++++++. +   .+.+|+..+.    ..+.....+.+++
T Consensus        90 ------------------~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~-~---~i~~~~~~~~----~~~~~~~~~~~~~  143 (299)
T d1nr0a2          90 ------------------SSKAVANKLSSQPLGLAVSADGDIAVAACY-K---HIAIYSHGKL----TEVPISYNSSCVA  143 (299)
T ss_dssp             ------------------TTSCCEEECSSCEEEEEECTTSSCEEEEES-S---EEEEEETTEE----EEEECSSCEEEEE
T ss_pred             ------------------cccccccccccccccccccccccccccccc-c---cccccccccc----ccccccccccccc
Confidence                              001123467788999999999998887764 3   8999985432    2234455688999


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCeEEE-EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--ceEEeecC
Q 005235          547 FHPTRSIFFVST-KKNIRVYDLLKQRLIK-KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK--PYRVLKCH  622 (707)
Q Consensus       547 fspd~~~l~v~s-dg~I~iwDl~~~~~~~-~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~--~~~~l~~h  622 (707)
                      |+|++.+|++++ |+.|++||+.+++... ....|...|++++|+|++.+|++|+.|+.|++||+.++..  ....+.+|
T Consensus       144 ~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h  223 (299)
T d1nr0a2         144 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH  223 (299)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999988 8999999998876543 3456788999999999999999999999999999986532  23456789


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 005235          623 PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVI  702 (707)
Q Consensus       623 ~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~I  702 (707)
                      ...|++++|+|++++||+|+.||+|+||++.      +... .++.....|...   .|..+.| +++.+|+|||.||+|
T Consensus       224 ~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~------~~~~-~~~~~~~~~~~~---~v~~~~~-~~~~~l~s~s~D~~i  292 (299)
T d1nr0a2         224 TAKVACVSWSPDNVRLATGSLDNSVIVWNMN------KPSD-HPIIIKGAHAMS---SVNSVIW-LNETTIVSAGQDSNI  292 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETT------CTTS-CCEEETTSSTTS---CEEEEEE-EETTEEEEEETTSCE
T ss_pred             ccccccccccccccceEEEcCCCEEEEEECC------CCCc-ceEEEecCCCCC---cEEEEEE-CCCCEEEEEeCCCEE
Confidence            9999999999999999999999999999654      2221 123333444432   2666655 567899999999999


Q ss_pred             EEEeC
Q 005235          703 RLYCH  707 (707)
Q Consensus       703 rlWdl  707 (707)
                      +||||
T Consensus       293 ~iWdl  297 (299)
T d1nr0a2         293 KFWNV  297 (299)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-32  Score=292.75  Aligned_cols=283  Identities=13%  Similarity=0.150  Sum_probs=220.9

Q ss_pred             ccCCCCcEEEEEeCCCcEEEEeCCCCe--EEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccccc
Q 005235          383 PYPVACYLEYKGSTDGTVRIWEVESGR--CLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       383 pfp~~~~~l~sgs~DgtVrIWd~~tg~--~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~  459 (707)
                      .|..++.++++|+.||.|+||++.+++  ++..+.+ .++|.+|+|+|+++ .|++++.|++|+||++.++...      
T Consensus        14 ~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~-~l~s~s~D~~i~vWd~~~~~~~------   86 (371)
T d1k8kc_          14 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWK------   86 (371)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTEEE------
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCC-EEEEEECCCeEEEEeecccccc------
Confidence            455566799999999999999998886  5556665 78999999999994 7888889999999997653210      


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee---eee
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR---IPF  536 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~---~~~  536 (707)
                                                ....+.+|...|.+++|+|++++|++++.++   .|++|++.......   ...
T Consensus        87 --------------------------~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~---~i~i~~~~~~~~~~~~~~~~  137 (371)
T d1k8kc_          87 --------------------------PTLVILRINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIK  137 (371)
T ss_dssp             --------------------------EEEECCCCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEEC
T ss_pred             --------------------------cccccccccccccccccccccccceeecccC---cceeeeeecccccccccccc
Confidence                                      0112347888999999999999999999988   99999987765431   222


Q ss_pred             -ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC------------------CeEEEEEeCCCCCeEEEEEcCCCCEEE
Q 005235          537 -KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK------------------QRLIKKLETGLKEVSSIAIHPAGDNLI  596 (707)
Q Consensus       537 -~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~------------------~~~~~~l~~~~~~I~sl~~spdg~~L~  596 (707)
                       .+...|.+++|+|++.+|++|+ |++|++||+..                  +.++.....|...|.+++|+|+|++|+
T Consensus       138 ~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  217 (371)
T d1k8kc_         138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  217 (371)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc
Confidence             6788999999999999999998 99999999753                  245667778889999999999999999


Q ss_pred             EEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccC-------CCCCCcc-----
Q 005235          597 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSD-------LNQNPLI-----  664 (707)
Q Consensus       597 sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~D-------l~~~~~~-----  664 (707)
                      +|+.|+.|++||+..+ .++..+..|..+|.+++|+|++.+||+|+ |+.+++|.......       +......     
T Consensus       218 s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (371)
T d1k8kc_         218 WVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL  295 (371)
T ss_dssp             EEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred             ccccCCcceEEeeecc-cceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccc
Confidence            9999999999999877 77889999999999999999999888765 67777765432100       0000000     


Q ss_pred             --------------------cceEEeeCCCCCCCCCeeEEEEcCCCC----EEEEEeCCCcEEEEeC
Q 005235          665 --------------------VPLEILRGHTSSNGRGVMDCKFHPRQP----WLFTAGADSVIRLYCH  707 (707)
Q Consensus       665 --------------------~pl~~l~gh~~~~~~gV~~l~fspdg~----~L~s~g~Dg~IrlWdl  707 (707)
                                          ........|.+.    |+++++++.+.    .|+|+|.||.|+|||+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~----I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNS----VSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             CHHHHHHHCCCCC---------CCCSSSSSSC----EEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             cceeeEecccceeEEeccccccceecccccCC----EEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence                                000011236665    99999988653    5899999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-31  Score=272.20  Aligned_cols=281  Identities=16%  Similarity=0.245  Sum_probs=237.2

Q ss_pred             CCCCCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcC
Q 005235          285 PAPKPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCP  357 (707)
Q Consensus       285 papk~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~p  357 (707)
                      |.++..|.||..     +|+|++++|+|++.          |..+  |.......++.+.++...       +..+.++|
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~----------Dg~i~iWd~~~~~~~~~~~~h~~~-------V~~~~~~~   69 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASE----------DATIKVWDYETGDFERTLKGHTDS-------VQDISFDH   69 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEES----------SSCEEEEETTTCCCCEEECCCSSC-------EEEEEECT
T ss_pred             CCccEEEcCCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCEEEEEeCCCCc-------EEEEeeec
Confidence            345667999987     59999999999665          4444  434445555555544444       36667765


Q ss_pred             ccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEE
Q 005235          358 RVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAV  436 (707)
Q Consensus       358 r~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~  436 (707)
                      ..                             .++++++.++++.+|+.........+.. ...+.++.|+|+++ .++++
T Consensus        70 ~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  119 (317)
T d1vyhc1          70 SG-----------------------------KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSA  119 (317)
T ss_dssp             TS-----------------------------SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEE
T ss_pred             cc-----------------------------ccccccccccccccccccccccccccccccccceeeeccCCCc-eEEee
Confidence            44                             4899999999999999998887766665 78899999999994 78888


Q ss_pred             EeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 005235          437 SVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG  516 (707)
Q Consensus       437 s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg  516 (707)
                      +.|+.+.+|++.++..                                  ...+..|...+.+++|++++.+|++++.|+
T Consensus       120 ~~d~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  165 (317)
T d1vyhc1         120 SRDKTIKMWEVQTGYC----------------------------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQ  165 (317)
T ss_dssp             ETTSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCcceeEeeccccee----------------------------------eeEEccCCCcceeeecccCCCEEEEEeCCC
Confidence            9999999999876522                                  113557889999999999999999999988


Q ss_pred             CccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCC--------------------CEEEEEe-CCeEEEEECCCCeEEE
Q 005235          517 ESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTR--------------------SIFFVST-KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       517 ~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~--------------------~~l~v~s-dg~I~iwDl~~~~~~~  574 (707)
                         .|++|++...... ..+ .+...+.++.|+|++                    .++++++ |+.|++||+.+++++.
T Consensus       166 ---~v~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  241 (317)
T d1vyhc1         166 ---TVRVWVVATKECK-AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM  241 (317)
T ss_dssp             ---CEEEEETTTCCEE-EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ---eEEEEeeccceee-EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE
Confidence               9999999999887 777 888899999998764                    3577777 8999999999999999


Q ss_pred             EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      ++.+|...|.+++|+|+|.+|++|+.||.|++||+.++ +++.++.+|...|++++|+|++++||+|+.||+|+||+
T Consensus       242 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999999987 78999999999999999999999999999999999994

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-31  Score=275.38  Aligned_cols=291  Identities=12%  Similarity=0.142  Sum_probs=227.5

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc----ccceee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR----VKDLLH  463 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~----~~~v~~  463 (707)
                      .+|++|+.||+|+|||+.+++++.++.+ .+.|.+|+|+|++  .|++++.|+.|++|+...........    ......
T Consensus        24 ~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~  101 (355)
T d1nexb2          24 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD  101 (355)
T ss_dssp             TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT--EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC--EEEEEecccccccccccccccccccccccccccccc
Confidence            4899999999999999999999999987 8999999999987  79999999999999988764321111    111111


Q ss_pred             eccc-----ccccCCCCcEEEEecCCccceE------------------------EeccCCCeEEEEEcCCCCEEEEEeC
Q 005235          464 VETP-----TAPDDNMASIVSWLQHDKLDGI------------------------RLRHFKMVSSVEWHRRGDYLSTVMP  514 (707)
Q Consensus       464 ~~~~-----~~~~~~d~~i~iW~~~~~~~~~------------------------~~~h~~~V~~v~~sp~g~~lat~s~  514 (707)
                      ..+.     ++.++.++.+++|+........                        ...|...+  ..+.++++++++++.
T Consensus       102 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~  179 (355)
T d1nexb2         102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSY  179 (355)
T ss_dssp             EEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--EEEEEETTEEEEEET
T ss_pred             cccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc--cccccccceeeeecc
Confidence            1111     6778899999999986432211                        11223333  345567899999999


Q ss_pred             CCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC
Q 005235          515 AGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG  592 (707)
Q Consensus       515 dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg  592 (707)
                      |+   .|++|++.+.... ..+ .+...+.++.|+|++.++++++ |+.|++||+.++.++..+.+|...|.+++++  +
T Consensus       180 d~---~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~  253 (355)
T d1nexb2         180 DN---TLIVWDVAQMKCL-YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--D  253 (355)
T ss_dssp             TS---CEEEEETTTTEEE-EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--S
T ss_pred             cc---eeeeeecccccce-eeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--c
Confidence            88   9999999998876 666 7888999999999999999998 8999999999999999999999999999997  4


Q ss_pred             CEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEE-EEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee
Q 005235          593 DNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNV-AFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR  671 (707)
Q Consensus       593 ~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~v-afspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~  671 (707)
                      ++|++|+.||.|++||+...   ...+..|...+.++ .|++++.+|++|+ ||+|+|||+      .++.++  ...+.
T Consensus       254 ~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~------~tg~~~--~~~~~  321 (355)
T d1nexb2         254 KFLVSAAADGSIRGWDANDY---SRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNL------RSGKLV--HANIL  321 (355)
T ss_dssp             SEEEEECTTSEEEEEETTTC---CEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEET------TTCCBC--CSCTT
T ss_pred             ceeeeeeccccccccccccc---ceecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEEC------CCCCEE--EEEec
Confidence            69999999999999999865   34566677666665 4577777777765 899999954      444432  12467


Q ss_pred             CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          672 GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       672 gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      +|...    |++++|+|+ ..|++++.||+++||.
T Consensus       322 ~~~~~----V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         322 KDADQ----IWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             TTCSE----EEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             CCCCC----EEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            88876    999999987 4778889999977663

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.7e-31  Score=277.56  Aligned_cols=244  Identities=15%  Similarity=0.151  Sum_probs=203.1

Q ss_pred             CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235          418 EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV  497 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V  497 (707)
                      +.+.+++++|+|+  .++.+.++.|.+|++.+...                                  ...+.+|...|
T Consensus        18 ~~~~~~a~~~~g~--~l~~~~~~~v~i~~~~~~~~----------------------------------~~~~~~H~~~v   61 (311)
T d1nr0a1          18 GTAVVLGNTPAGD--KIQYCNGTSVYTVPVGSLTD----------------------------------TEIYTEHSHQT   61 (311)
T ss_dssp             TCCCCCEECTTSS--EEEEEETTEEEEEETTCSSC----------------------------------CEEECCCSSCE
T ss_pred             CCeEEEEEcCCCC--EEEEEeCCEEEEEECCCCce----------------------------------eEEEcCCCCCE
Confidence            4566789999994  56666788899999865422                                  12356899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEEEEeCCCCEEEEEe---CCeEEEEECCCCeE
Q 005235          498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSSVFHPTRSIFFVST---KKNIRVYDLLKQRL  572 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v~fspd~~~l~v~s---dg~I~iwDl~~~~~  572 (707)
                      ++++|+|+|++||+|+.|+   .|+||++.+..... ..+ .|.+.|.+++|+|++++|++++   ++.++||++.+++.
T Consensus        62 ~~~~~sp~g~~latg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~  138 (311)
T d1nr0a1          62 TVAKTSPSGYYCASGDVHG---NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS  138 (311)
T ss_dssp             EEEEECTTSSEEEEEETTS---EEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred             EEEEEeCCCCeEeccccCc---eEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999998   99999998876541 345 7889999999999999999887   35699999999998


Q ss_pred             EEEEeCCCCCeEEEEEcCCCCE-EEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          573 IKKLETGLKEVSSIAIHPAGDN-LIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       573 ~~~l~~~~~~I~sl~~spdg~~-L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      ..++.+|...|++++|+|++.+ |++|+.||.|++||+++. ++...+..|...|++++|+|++++|++|+.||.|++|+
T Consensus       139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~-~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d  217 (311)
T d1nr0a1         139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN  217 (311)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccccccccccccccceeeeccccccccccccccccc-ccccccccccccccccccCccccccccccccccccccc
Confidence            8899999999999999999985 788999999999999977 77888999999999999999999999999999999997


Q ss_pred             cccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          652 GMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       652 ~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ......+....  .......+|...    |.+++|+|++++|++|+.||+|+|||+
T Consensus       218 ~~~~~~~~~~~--~~~~~~~~h~~~----V~~~~~s~~~~~l~tgs~Dg~v~iwd~  267 (311)
T d1nr0a1         218 GVDGTKTGVFE--DDSLKNVAHSGS----VFGLTWSPDGTKIASASADKTIKIWNV  267 (311)
T ss_dssp             TTTCCEEEECB--CTTSSSCSSSSC----EEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ccccccccccc--cccccccccccc----ccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            54221110000  011223567776    999999999999999999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5e-30  Score=270.57  Aligned_cols=250  Identities=16%  Similarity=0.197  Sum_probs=210.2

Q ss_pred             CeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccc
Q 005235          408 GRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLD  487 (707)
Q Consensus       408 g~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~  487 (707)
                      .+++.++.+...|.||+|+|+|  .+++++.++.|+|||+.......                     .+.        .
T Consensus        42 ~~~~~~~~H~~~V~~v~fs~~g--~~latg~dg~V~iWd~~~~~~~~---------------------~~~--------~   90 (337)
T d1gxra_          42 ARQINTLNHGEVVCAVTISNPT--RHVYTGGKGCVKVWDISHPGNKS---------------------PVS--------Q   90 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECSSS--SEEEEECBSEEEEEETTSTTCCS---------------------CSE--------E
T ss_pred             ceEEEECCCCCcEEEEEECCCC--CEEEEEECCEEEEEEccCCcccc---------------------eeE--------E
Confidence            3567778888999999999999  35555668999999987653210                     000        0


Q ss_pred             eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee-eeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEE
Q 005235          488 GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH-RIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRV  564 (707)
Q Consensus       488 ~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~-~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~i  564 (707)
                      ....+|.+.|.+++|+|+|++|++++.|+   .|++||+...... ...+ .+...+.+++|+|++.++++++ ++.|++
T Consensus        91 ~~~~~h~~~I~~v~~s~dg~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~  167 (337)
T d1gxra_          91 LDCLNRDNYIRSCKLLPDGCTLIVGGEAS---TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV  167 (337)
T ss_dssp             EECSCTTSBEEEEEECTTSSEEEEEESSS---EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eeecCCCCcEEEEEEcCCCCEEEEeeccc---cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            12347899999999999999999999998   9999999765432 1445 7888999999999999999988 899999


Q ss_pred             EECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q 005235          565 YDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD  644 (707)
Q Consensus       565 wDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~D  644 (707)
                      |++.++++......|...|.+++|++++..+++|+.|+.|++||+.++ +.+..+. |...|.+++|+|++.+|++|+.|
T Consensus       168 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~-~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d  245 (337)
T d1gxra_         168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-RQLQQHD-FTSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE-CSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-eeecccc-cccceEEEEEcccccccceeccc
Confidence            999999999999999999999999999999999999999999999877 6666654 78899999999999999999999


Q ss_pred             CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          645 CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       645 g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |.|++|++.      ...    .....+|...    |.+++|+|++++|++++.||+|++||+
T Consensus       246 ~~i~i~d~~------~~~----~~~~~~~~~~----i~~v~~s~~g~~l~s~s~Dg~i~iwd~  294 (337)
T d1gxra_         246 SNVEVLHVN------KPD----KYQLHLHESC----VLSLKFAYCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             SCEEEEETT------SSC----EEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ccccccccc------ccc----cccccccccc----cceEEECCCCCEEEEEeCCCeEEEEEC
Confidence            999999653      332    3456778877    999999999999999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-29  Score=260.91  Aligned_cols=291  Identities=14%  Similarity=0.137  Sum_probs=226.3

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhccc--ccceeeec
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRR--VKDLLHVE  465 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~--~~~v~~~~  465 (707)
                      .+|+|||.||+|+|||+.++++++++.. .+.|.+++|+|+   .+++++.|+.+++|+...........  ...+....
T Consensus        28 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (342)
T d2ovrb2          28 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH  104 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC---ccccceecccccccccccccceecccccceeEeeee
Confidence            4899999999999999999999999887 789999999985   59999999999999987764322111  11111111


Q ss_pred             cc---ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCC
Q 005235          466 TP---TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGL  541 (707)
Q Consensus       466 ~~---~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~  541 (707)
                      ..   ...+..++.+.+|+................ ...+......+++++.++   .|++|++...... ..+ .+...
T Consensus       105 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~---~i~~~d~~~~~~~-~~~~~~~~~  179 (342)
T d2ovrb2         105 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA-VRCVQYDGRRVVSGAYDF---MVKVWDPETETCL-HTLQGHTNR  179 (342)
T ss_dssp             EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC-EEEEEECSSCEEEEETTS---CEEEEEGGGTEEE-EEECCCSSC
T ss_pred             cccccccccccceeEEEeecccccceeeeeccccc-ceeeccccceeeeecCCC---eEEEeecccceee-EEEcCcccc
Confidence            11   556677899999998877655443333332 334455677889999988   9999999988776 666 66665


Q ss_pred             eEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee
Q 005235          542 PVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       542 V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~  620 (707)
                      +..+  ++++.+|++++ |+.|++||+..++++..+..|...+.+++++  +++|++|+.||.|++||+... +....+.
T Consensus       180 ~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~-~~~~~~~  254 (342)
T d2ovrb2         180 VYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG-QCLQTLQ  254 (342)
T ss_dssp             EEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-CEEEEEC
T ss_pred             cccc--cCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccc-ccccccc
Confidence            5554  45678899988 9999999999999999999999999988876  569999999999999999876 5556665


Q ss_pred             c---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe-----eCCCCCCCCCeeEEEEcCCCCE
Q 005235          621 C---HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL-----RGHTSSNGRGVMDCKFHPRQPW  692 (707)
Q Consensus       621 ~---h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l-----~gh~~~~~~gV~~l~fspdg~~  692 (707)
                      .   |...+.+++|+  +.+|++|+.||+|+|||      +.++..   +..+     .+|...    |++++|+|++.+
T Consensus       255 ~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd------~~tg~~---i~~~~~~~~~~~~~~----v~~v~~s~~~~~  319 (342)
T d2ovrb2         255 GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD------LKTGEF---IRNLVTLESGGSGGV----VWRIRASNTKLV  319 (342)
T ss_dssp             STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE------TTTCCE---EEEEEECTTGGGTCE----EEEEEECSSEEE
T ss_pred             ccceeeeceeecccC--CCeeEEEcCCCEEEEEE------CCCCCE---EEEEecccCCCCCCC----EEEEEECCCCCE
Confidence            4   45677777775  56899999999999994      445544   3443     356655    999999999999


Q ss_pred             EEEEeCCCc----EEEEeC
Q 005235          693 LFTAGADSV----IRLYCH  707 (707)
Q Consensus       693 L~s~g~Dg~----IrlWdl  707 (707)
                      |++|+.||+    |++||+
T Consensus       320 la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         320 CAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             EEEECSSSSSCCEEEEEEC
T ss_pred             EEEEeCCCCCeeEEEEEeC
Confidence            999999996    999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.8e-29  Score=267.68  Aligned_cols=289  Identities=12%  Similarity=0.084  Sum_probs=217.3

Q ss_pred             EEEeCCCcEEEEeCCCCeE-----EEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecc
Q 005235          392 YKGSTDGTVRIWEVESGRC-----LRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       392 ~sgs~DgtVrIWd~~tg~~-----l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      +.+..++.+.+|+....+.     ...+.+.+.|+||+|+|+|  .+++++.|+.|+||++.++.........       
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg--~~lasg~d~~i~iW~~~~~~~~~~~~~~-------  102 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG--EYLATGCNKTTQVYRVSDGSLVARLSDD-------  102 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTS--SEEEEECBSCEEEEETTTCCEEEEECC--------
T ss_pred             cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCC--CEEEEEeCCeEEEEEecccceEeeeccc-------
Confidence            4567888999999765542     3455678999999999999  4666677999999999876432110000       


Q ss_pred             cccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEE
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSS  545 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v  545 (707)
                               .................|...|.+++|+|+|++|++++.|+   .|++|+...+... ..+ .|...|.++
T Consensus       103 ---------~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg---~v~i~~~~~~~~~-~~~~~h~~~v~~~  169 (388)
T d1erja_         103 ---------SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR---LIRIWDIENRKIV-MILQGHEQDIYSL  169 (388)
T ss_dssp             -------------------------CCCCBEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE-EEECCCSSCEEEE
T ss_pred             ---------ccccccccccccccccCCCCCEEEEEECCCCCcceeccccc---ccccccccccccc-ccccccccccccc
Confidence                     00000000111112457888999999999999999999998   9999999998887 666 899999999


Q ss_pred             EEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEE------
Q 005235          546 VFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRV------  618 (707)
Q Consensus       546 ~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~------  618 (707)
                      +|++++..+++++ ++.|++||+.+.........+...+..+.+.+++.+|++|+.||.|++||+.++ .....      
T Consensus       170 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~  248 (388)
T d1erja_         170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENE  248 (388)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC----
T ss_pred             ccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccC-ccceeeccccc
Confidence            9999999999988 899999999999888877766544444444558899999999999999999876 33333      


Q ss_pred             -eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCC---CCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEE
Q 005235          619 -LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQ---NPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLF  694 (707)
Q Consensus       619 -l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~---~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~  694 (707)
                       ..+|...|++++|+|++.+|++|+.||.|++|++........   .....+......|...    |.+++|+|++++|+
T Consensus       249 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~  324 (388)
T d1erja_         249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF----VLSVATTQNDEYIL  324 (388)
T ss_dssp             --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC----EEEEEECGGGCEEE
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccce----EEEEEECCCCCEEE
Confidence             346889999999999999999999999999998754322111   1122345667788877    99999999999999


Q ss_pred             EEeCCCcEEEEeC
Q 005235          695 TAGADSVIRLYCH  707 (707)
Q Consensus       695 s~g~Dg~IrlWdl  707 (707)
                      +|+.||+|++||+
T Consensus       325 sg~~dg~i~vwd~  337 (388)
T d1erja_         325 SGSKDRGVLFWDK  337 (388)
T ss_dssp             EEETTSEEEEEET
T ss_pred             EEeCCCEEEEEEC
Confidence            9999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-29  Score=265.95  Aligned_cols=296  Identities=11%  Similarity=0.080  Sum_probs=217.5

Q ss_pred             CCCCCCCCCCCcc----cCCCCcEEEEEeCCC-cEEEEeCCCC--eEEEEEec--CCcEEEEEEccCCC-ccEEEEEeCC
Q 005235          371 LKPKLPSRKDLKP----YPVACYLEYKGSTDG-TVRIWEVESG--RCLRVLEI--GEAIQYVAWNPLPE-LPVLAVSVGQ  440 (707)
Q Consensus       371 llp~lp~~~~l~p----fp~~~~~l~sgs~Dg-tVrIWd~~tg--~~l~~l~~--~~~V~~v~~spdg~-~~lla~s~d~  440 (707)
                      +.|.+|......+    |...+..++.++.+. .|+.|+....  ..+..+.+  ...|++++|+|+.+ ..|++++.|+
T Consensus         8 ~~p~~p~t~~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg   87 (325)
T d1pgua1           8 IIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG   87 (325)
T ss_dssp             EECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTS
T ss_pred             ccCCcCCCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCC
Confidence            4455555433222    445556666665443 4677876543  34555554  56899999998542 3556777899


Q ss_pred             eEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccE
Q 005235          441 DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRA  520 (707)
Q Consensus       441 ~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~  520 (707)
                      +|+||++..+......                     .     .........|.+.|.+++|+++|.+|++++.+. ...
T Consensus        88 ~i~iWd~~~~~~~~~~---------------------~-----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~-~~~  140 (325)
T d1pgua1          88 KVIVWGWTFDKESNSV---------------------E-----VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR-DNF  140 (325)
T ss_dssp             EEEEEEEEEEGGGTEE---------------------E-----EEEEEEEECCSSCEEEEEECTTSSEEEEEECCS-SCS
T ss_pred             CEEEeeecCCcceeee---------------------e-----cccccccccccCcEEEEEECCCCCccceeeccc-cce
Confidence            9999997654221100                     0     000112446889999999999999999888644 458


Q ss_pred             EEEEECCCCceeeeee-ccCCCeEEEEEeCCCCE-EEEEe-CCeEEEEECCCCeEEEEEe---CCCCCeEEEEEcCC-CC
Q 005235          521 IFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSI-FFVST-KKNIRVYDLLKQRLIKKLE---TGLKEVSSIAIHPA-GD  593 (707)
Q Consensus       521 V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~-l~v~s-dg~I~iwDl~~~~~~~~l~---~~~~~I~sl~~spd-g~  593 (707)
                      +.+|++.++... ..+ .|...|.+++|+|++++ +++++ |+.|++||+...+....+.   .+...|.+++|+|+ +.
T Consensus       141 ~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~  219 (325)
T d1pgua1         141 GVFISWDSGNSL-GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE  219 (325)
T ss_dssp             EEEEETTTCCEE-EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred             EEEEeecccccc-eeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccce
Confidence            999999998887 777 89999999999999876 45566 8999999999887776664   45577999999996 68


Q ss_pred             EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEe
Q 005235          594 NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFH---RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL  670 (707)
Q Consensus       594 ~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafs---pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l  670 (707)
                      +|++|+.||.|++||+.++ +++..+.+|...+.++.|+   |++.+|++|+.|++|+|||      +.++.   ++..+
T Consensus       220 ~l~s~~~d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd------~~~~~---~~~~~  289 (325)
T d1pgua1         220 FVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD------VTTSK---CVQKW  289 (325)
T ss_dssp             EEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEE------TTTTE---EEEEE
T ss_pred             eccccccccceeeeeeccc-cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEE------CCCCC---EEEEE
Confidence            9999999999999999987 7889999998887766666   6899999999999999995      44443   36667


Q ss_pred             eCCCCCCCCCee--EEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          671 RGHTSSNGRGVM--DCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       671 ~gh~~~~~~gV~--~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ..|...  .++.  ++.|.++ .+|+++|.||+|++|||
T Consensus       290 ~~~~~~--~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         290 TLDKQQ--LGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ECCTTC--GGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EecCCc--ccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            666543  1233  4444443 48999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.1e-29  Score=272.10  Aligned_cols=240  Identities=16%  Similarity=0.143  Sum_probs=196.3

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .++|+|++|+|++ ..|++++.++.|+||++.++...                                ....+.+|.+.
T Consensus         7 ~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~~~~--------------------------------~~~~l~gH~~~   53 (371)
T d1k8kc_           7 VEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWV--------------------------------QVHELKEHNGQ   53 (371)
T ss_dssp             SSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEE--------------------------------EEEEEECCSSC
T ss_pred             CCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCCCEE--------------------------------EEEEecCCCCC
Confidence            5789999999999 36667778899999997543211                                01235689999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-eee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe--
Q 005235          497 VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-IPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR--  571 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~--  571 (707)
                      |.+|+|+|++++|++++.|+   .|+||++..+.... ..+ .+...|.+++|+|+++.|++++ ++.|++|++....  
T Consensus        54 V~~l~fsp~~~~l~s~s~D~---~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~  130 (371)
T d1k8kc_          54 VTGVDWAPDSNRIVTCGTDR---NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW  130 (371)
T ss_dssp             EEEEEEETTTTEEEEEETTS---CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             EEEEEECCCCCEEEEEECCC---eEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccc
Confidence            99999999999999999988   99999998776541 334 7788999999999999999998 8999999987643  


Q ss_pred             --EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-----------------cceEEeecCCCCEEEEEEc
Q 005235          572 --LIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-----------------KPYRVLKCHPKDITNVAFH  632 (707)
Q Consensus       572 --~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-----------------~~~~~l~~h~~~I~~vafs  632 (707)
                        .......|...|.+++|+|+|.+|++|+.|+.|++||+....                 .++.....|...|.+++|+
T Consensus       131 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  210 (371)
T d1k8kc_         131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS  210 (371)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred             ccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee
Confidence              233344677889999999999999999999999999986421                 3456667899999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          633 RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       633 pdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                      |++++||+++.||+|++||..      ...   ++..+.+|...    |.+++|+|++.+|++ |.|+.+++|.
T Consensus       211 ~~g~~l~s~~~d~~i~iwd~~------~~~---~~~~~~~~~~~----v~s~~fs~d~~~la~-g~d~~~~~~~  270 (371)
T d1k8kc_         211 ANGSRVAWVSHDSTVCLADAD------KKM---AVATLASETLP----LLAVTFITESSLVAA-GHDCFPVLFT  270 (371)
T ss_dssp             SSSSEEEEEETTTEEEEEEGG------GTT---EEEEEECSSCC----EEEEEEEETTEEEEE-ETTSSCEEEE
T ss_pred             cccccccccccCCcceEEeee------ccc---ceeeeeccccc----ceeeeecCCCCEEEE-EcCCceEEEE
Confidence            999999999999999999653      333   47888999887    999999999987775 4578777764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.5e-28  Score=252.46  Aligned_cols=277  Identities=13%  Similarity=0.144  Sum_probs=223.0

Q ss_pred             CCCCCCCcc-----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccc
Q 005235          288 KPKLPGHEE-----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVR  360 (707)
Q Consensus       288 k~~lpgh~~-----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~  360 (707)
                      +..|.||..     +|+|++.+|++++.          |+.+  |.......+..++.+...|       ..+.|+|.. 
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~----------Dg~v~iWd~~~~~~~~~~~~~~~~v-------~~v~~~~~~-  109 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQ----------DGKLIIWDSYTTNKVHAIPLRSSWV-------MTCAYAPSG-  109 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEET----------TTEEEEEETTTTEEEEEEECSCSCE-------EEEEECTTS-
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEEC----------CCceeeeecccceeEEEEecccccE-------EeeEeeccc-
Confidence            346889988     59999999999665          4444  4455566666665555444       667777654 


Q ss_pred             cceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEec-CCcEEEEEEccCCCccEEE
Q 005235          361 KKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESG----RCLRVLEI-GEAIQYVAWNPLPELPVLA  435 (707)
Q Consensus       361 k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg----~~l~~l~~-~~~V~~v~~spdg~~~lla  435 (707)
                                                  .++++|+.|+++++|+....    .....+.. ...+.+..+..+.  .++.
T Consensus       110 ----------------------------~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  159 (340)
T d1tbga_         110 ----------------------------NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVT  159 (340)
T ss_dssp             ----------------------------SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT--EEEE
T ss_pred             ----------------------------eeeeeecccceeecccccccccccccceeccccccccccccccccc--cccc
Confidence                                        48999999999999997654    34445544 4445555555554  5777


Q ss_pred             EEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 005235          436 VSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPA  515 (707)
Q Consensus       436 ~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~d  515 (707)
                      ...+.....+.......                                  ......+...+..+.+.+.+.++++++.+
T Consensus       160 ~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         160 SSGDTTCALWDIETGQQ----------------------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             EETTTEEEEEETTTTEE----------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccc----------------------------------cccccccceeEeeeccccccceeEEeecC
Confidence            77777777776543211                                  11244677889999999999999999999


Q ss_pred             CCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe--CCCCCeEEEEEcCC
Q 005235          516 GESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE--TGLKEVSSIAIHPA  591 (707)
Q Consensus       516 g~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~~~I~sl~~spd  591 (707)
                      +   .|++||+.++... ..+ .|.+.|.+++|+|++.+|++++ |+.|++||+.....+..+.  .+...|.+++|+|+
T Consensus       206 ~---~v~i~d~~~~~~~-~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
T d1tbga_         206 A---SAKLWDVREGMCR-QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             T---EEEEEETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred             c---eEEEEECCCCcEE-EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC
Confidence            8   9999999999887 788 8999999999999999999998 8999999999988877664  45567999999999


Q ss_pred             CCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          592 GDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       592 g~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      |.+|++|+.||.|++||+.++ .++.++.+|..+|++++|+|++++|||||.||+|+|||
T Consensus       282 ~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         282 GRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEECCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999887 78999999999999999999999999999999999994

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=2.5e-28  Score=251.38  Aligned_cols=248  Identities=16%  Similarity=0.149  Sum_probs=198.6

Q ss_pred             CeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc
Q 005235          408 GRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL  486 (707)
Q Consensus       408 g~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~  486 (707)
                      |...+.+.+ .+.|++|+|+|++ ..|++++.|++|++||+.++....                                
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~~~~--------------------------------   48 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNR--------------------------------   48 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEE--------------------------------
T ss_pred             CccceEcCCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEE--------------------------------
Confidence            566777777 8899999999999 478888999999999987653210                                


Q ss_pred             ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee--eee-ccCCCeEEEEEeCCCCEEEEEeCCeEE
Q 005235          487 DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR--IPF-KLHGLPVSSVFHPTRSIFFVSTKKNIR  563 (707)
Q Consensus       487 ~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~-~~~~~V~~v~fspd~~~l~v~sdg~I~  563 (707)
                       .....|...|.+++|+|+|.++ +++.|+   .+++|++.......  ... .+...+.+++|+|++.+++++.++.++
T Consensus        49 -~~~~~h~~~v~~v~~~~~g~~~-~~~~d~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~  123 (299)
T d1nr0a2          49 -VFPDVHATMITGIKTTSKGDLF-TVSWDD---HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA  123 (299)
T ss_dssp             -CSSCSCSSCEEEEEECTTSCEE-EEETTT---EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred             -EEcCCCCCcEEEEEeeccceee-ccccee---eEEEeccCCcccccccccccccccccccccccccccccccccccccc
Confidence             0123688999999999999755 555666   99999987654321  122 667889999999999999988899999


Q ss_pred             EEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeC
Q 005235          564 VYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       564 iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~  643 (707)
                      +|+..  +......  ...+.+++|+|++.+|++|+.||.|.+||+.+..........|...|++++|+|++.+|++++.
T Consensus       124 ~~~~~--~~~~~~~--~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  199 (299)
T d1nr0a2         124 IYSHG--KLTEVPI--SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ  199 (299)
T ss_dssp             EEETT--EEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccc--ccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99954  3333332  3468899999999999999999999999998663223345578999999999999999999999


Q ss_pred             CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          644 DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ||.|++|+..      ++.....+..+.+|...    |++++|+|++++|++|+.||+|+|||+
T Consensus       200 d~~i~~~~~~------~~~~~~~~~~~~~h~~~----v~~l~~s~~~~~l~sgs~dg~i~iwd~  253 (299)
T d1nr0a2         200 SRKVIPYSVA------NNFELAHTNSWTFHTAK----VACVSWSPDNVRLATGSLDNSVIVWNM  253 (299)
T ss_dssp             TSCEEEEEGG------GTTEESCCCCCCCCSSC----EEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccc------ccccccccccccccccc----cccccccccccceEEEcCCCEEEEEEC
Confidence            9999999553      34343445667888887    999999999999999999999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-27  Score=241.36  Aligned_cols=265  Identities=13%  Similarity=0.184  Sum_probs=212.7

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      ++.+|+|||.||+|+|||+.++++++++.+ .+.|.+|+|+++   .|++++.|+.|++|++..+....           
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~---~l~s~s~D~~i~~~~~~~~~~~~-----------   89 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLN-----------   89 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSS---EEEEEETTSCEEEEESSSCCEEE-----------
T ss_pred             cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccc---eeecccccccccccccccccccc-----------
Confidence            456999999999999999999999999987 889999998542   68899999999999987653211           


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee--eee-ccCCCe
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR--IPF-KLHGLP  542 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~--~~~-~~~~~V  542 (707)
                                              . ..........+......++++..++   .+.+|++.......  ..+ .+...+
T Consensus        90 ------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v  141 (293)
T d1p22a2          90 ------------------------T-LIHHCEAVLHLRFNNGMMVTCSKDR---SIAVWDMASPTDITLRRVLVGHRAAV  141 (293)
T ss_dssp             ------------------------E-ECCCCSCEEEEECCTTEEEEEETTS---CEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             ------------------------c-ccccccccccccccccceeeccccc---ceeEeecccccccccccccccccccc
Confidence                                    1 1112223344556677889999888   99999998766431  233 677788


Q ss_pred             EEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeec
Q 005235          543 VSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKC  621 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~  621 (707)
                      .++.+.+  ..+++++ |+.|++||+.+++++..+.++...+..+.++  +.+|++|+.||.|++||+.+. ..+..+.+
T Consensus       142 ~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~  216 (293)
T d1p22a2         142 NVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-ACLRVLEG  216 (293)
T ss_dssp             EEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-CEEEEECC
T ss_pred             ccceecc--cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc-eeeeeecc
Confidence            8777765  4566666 9999999999999999999998888888775  679999999999999999977 77888888


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 005235          622 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSV  701 (707)
Q Consensus       622 h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~  701 (707)
                      |...|..  +++++.+|++|+.||.|+||++.............++..+.+|...    |++++|+  +.+|+|||.||+
T Consensus       217 ~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~----V~~v~~d--~~~l~s~s~Dg~  288 (293)
T d1p22a2         217 HEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR----VFRLQFD--EFQIVSSSHDDT  288 (293)
T ss_dssp             CSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC----CCCEEEC--SSCEEECCSSSE
T ss_pred             cceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCC----EEEEEEc--CCEEEEEecCCE
Confidence            8888865  5567889999999999999988655444444444568899999988    9999995  568999999999


Q ss_pred             EEEEe
Q 005235          702 IRLYC  706 (707)
Q Consensus       702 IrlWd  706 (707)
                      |+|||
T Consensus       289 i~iWD  293 (293)
T d1p22a2         289 ILIWD  293 (293)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.5e-29  Score=254.10  Aligned_cols=250  Identities=15%  Similarity=0.150  Sum_probs=199.8

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccc
Q 005235          391 EYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAP  470 (707)
Q Consensus       391 l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~  470 (707)
                      |+||+.||+|++||+.++..    .+...|.+++|++++  .+++++.|++|++|++..                     
T Consensus        24 l~sgs~Dg~v~~Wd~~~~~~----~h~~~V~~~~~~~~~--~~~s~s~D~~v~~w~~~~---------------------   76 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDNSKAQ--EYSSISWDDTLKVNGITK---------------------   76 (287)
T ss_dssp             TEEEETTSCEEETTTTEEEC----CCCSCEEEEECCSTT--CCEEEETTTEEEETTEEE---------------------
T ss_pred             EEEEeCCCeEEEEECCCCCC----CCCCCEEEEEecCCC--eEEEEeeccccccccccc---------------------
Confidence            78999999999999876532    337789999999887  689999999999987432                     


Q ss_pred             cCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCC
Q 005235          471 DDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPT  550 (707)
Q Consensus       471 ~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd  550 (707)
                                          ..+...+.++++++++..+++++ ++   .+.+|+..++... ..+.....+  .+++++
T Consensus        77 --------------------~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~  129 (287)
T d1pgua2          77 --------------------HEFGSQPKVASANNDGFTAVLTN-DD---DLLILQSFTGDII-KSVRLNSPG--SAVSLS  129 (287)
T ss_dssp             --------------------EECSSCEEEEEECSSSEEEEEET-TS---EEEEEETTTCCEE-EEEECSSCE--EEEEEC
T ss_pred             --------------------cccccceeeeeeccCCceEEEee-cc---cceeeeccceeee-eecccccee--eeeecc
Confidence                                12345677888998887777655 34   7889999888776 666444443  567778


Q ss_pred             CCEEEEEe-C-CeEEEEECCCCeEEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEE
Q 005235          551 RSIFFVST-K-KNIRVYDLLKQRLIKKLE-TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDIT  627 (707)
Q Consensus       551 ~~~l~v~s-d-g~I~iwDl~~~~~~~~l~-~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~  627 (707)
                      +..+++++ + +.|++|++...+....+. .+...+++++|+|+|.+|++|+.||.|++||+..+......+.+|...|.
T Consensus       130 ~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~  209 (287)
T d1pgua2         130 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN  209 (287)
T ss_dssp             SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred             CcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccc
Confidence            88888877 4 679999998766655554 36678999999999999999999999999999877444445778999999


Q ss_pred             EEEEcCC----------CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235          628 NVAFHRS----------YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       628 ~vafspd----------g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g  697 (707)
                      +++|+|.          +.+||+|+.|++|+||++.      ...  ..+..+.+|...    |++++|+|++ .|+|+|
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~------~~~--~~~~~~~~h~~~----V~~v~~~~~~-~l~s~g  276 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK------RPM--KIIKALNAHKDG----VNNLLWETPS-TLVSSG  276 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESS------CTT--CCEEETTSSTTC----EEEEEEEETT-EEEEEE
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECC------CCC--eEEEEeCCCCCC----eEEEEECCCC-EEEEEE
Confidence            9999875          4689999999999999653      211  236778899987    9999999986 689999


Q ss_pred             CCCcEEEEeC
Q 005235          698 ADSVIRLYCH  707 (707)
Q Consensus       698 ~Dg~IrlWdl  707 (707)
                      .||+|++|++
T Consensus       277 ~D~~v~iW~i  286 (287)
T d1pgua2         277 ADACIKRWNV  286 (287)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.9e-28  Score=253.47  Aligned_cols=305  Identities=14%  Similarity=0.126  Sum_probs=228.8

Q ss_pred             CCCCCCCcc----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCcccc
Q 005235          288 KPKLPGHEE----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRK  361 (707)
Q Consensus       288 k~~lpgh~~----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k  361 (707)
                      +.+|.||..    +++++++||+|++.          |+.+  |.......++.+.++...|       ..|.++|.   
T Consensus         5 ~~tL~GH~~~vitc~~~~~~~l~tgs~----------Dg~i~vWd~~~~~~~~~l~~H~~~V-------~~l~~s~~---   64 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFEDNYVITGAD----------DKMIRVYDSINKKFLLQLSGHDGGV-------WALKYAHG---   64 (355)
T ss_dssp             EEEEECCSSSCEEEEEEETTEEEEEET----------TTEEEEEETTTTEEEEEEECCSSCE-------EEEEEETT---
T ss_pred             cEEECCcCCCcEEEEEECCCEEEEEeC----------CCeEEEEECCCCcEEEEEECCCCCE-------EEEEEcCC---
Confidence            457899976    37788999999665          4444  4455666677766655554       67777753   


Q ss_pred             ceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEe
Q 005235          362 KRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSV  438 (707)
Q Consensus       362 ~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~  438 (707)
                                                 .++++|+.||+|++|++..+.+......   ...+..+.+++++ ..+++++.
T Consensus        65 ---------------------------~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  116 (355)
T d1nexb2          65 ---------------------------GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSR  116 (355)
T ss_dssp             ---------------------------TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTE-EEEEEEET
T ss_pred             ---------------------------CEEEEEeccccccccccccccccccccccccccccccccccccc-ceeeeecC
Confidence                                       3799999999999999999998877766   3345666778887 46888889


Q ss_pred             CCeEEEEECCCCCchhccc-------------------------ccceeeeccc---ccccCCCCcEEEEecCCccceE-
Q 005235          439 GQDVLILNTGLGNEEEQRR-------------------------VKDLLHVETP---TAPDDNMASIVSWLQHDKLDGI-  489 (707)
Q Consensus       439 d~~V~lwd~~~~~~~~~~~-------------------------~~~v~~~~~~---~~~~~~d~~i~iW~~~~~~~~~-  489 (707)
                      |+.|++|++..........                         ...+......   ++.+..++.+.+|+........ 
T Consensus       117 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  196 (355)
T d1nexb2         117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI  196 (355)
T ss_dssp             TSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceee
Confidence            9999999987753211100                         0001111110   5667788999999998665443 


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDL  567 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl  567 (707)
                      ...+...+.++.|++++.++++++.|+   .|++|++.++... ..+ .|...|.+++|++  .+|++++ ||.|++||+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~---~i~i~d~~~~~~~-~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~  270 (355)
T d1nexb2         197 LSGHTDRIYSTIYDHERKRCISASMDT---TIRIWDLENGELM-YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDA  270 (355)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTS---CEEEEETTTCCEE-EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEET
T ss_pred             eeccccccccccccccceeeecccccc---eEEeeeccccccc-ccccccccccccccccc--ceeeeeecccccccccc
Confidence            567888999999999999999999988   9999999999887 777 8999999999975  5888888 999999999


Q ss_pred             CCCeEEEEEeCCCCCeEEE-EEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q 005235          568 LKQRLIKKLETGLKEVSSI-AIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCT  646 (707)
Q Consensus       568 ~~~~~~~~l~~~~~~I~sl-~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~  646 (707)
                      .++.....  .|...+.++ .+++++.+|++|+ ||.|++||++++......+.+|...|++++|+|+ .++++++.||+
T Consensus       271 ~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~  346 (355)
T d1nexb2         271 NDYSRKFS--YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQ  346 (355)
T ss_dssp             TTCCEEEE--EECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSC
T ss_pred             cccceecc--cccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCc
Confidence            98765443  344455554 5577777776665 8999999999874333457789999999999987 57889999999


Q ss_pred             EEEE
Q 005235          647 AYVF  650 (707)
Q Consensus       647 I~Vw  650 (707)
                      ++||
T Consensus       347 ~~l~  350 (355)
T d1nexb2         347 SFLE  350 (355)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8877

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.1e-27  Score=240.73  Aligned_cols=305  Identities=14%  Similarity=0.146  Sum_probs=230.8

Q ss_pred             CCCCCCCCcc----ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccc
Q 005235          287 PKPKLPGHEE----SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVR  360 (707)
Q Consensus       287 pk~~lpgh~~----synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~  360 (707)
                      |...|.||.+    +++++|++|+|++.          |+.+  |.......++.+.++...|       ..+.++|   
T Consensus         8 ~~~~l~GH~~~V~s~~~~~g~~l~sgs~----------Dg~i~vWd~~~~~~~~~~~~h~~~V-------~~v~~~~---   67 (342)
T d2ovrb2           8 SPKVLKGHDDHVITCLQFCGNRIVSGSD----------DNTLKVWSAVTGKCLRTLVGHTGGV-------WSSQMRD---   67 (342)
T ss_dssp             CCEEEECSTTSCEEEEEEETTEEEEEET----------TSCEEEEETTTCCEEEECCCCSSCE-------EEEEEET---
T ss_pred             cCEEECCcCCceEEEEEECCCEEEEEeC----------CCeEEEEECCCCCEEEEEeCCCCCE-------EEEEeCC---
Confidence            4456889986    38889999999765          5544  4455566676666555444       5565653   


Q ss_pred             cceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEEeC
Q 005235          361 KKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVSVG  439 (707)
Q Consensus       361 k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s~d  439 (707)
                                                  .++++|+.|+++++|+............ ...+....+.+.   .++.+..+
T Consensus        68 ----------------------------~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d  116 (342)
T d2ovrb2          68 ----------------------------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRD  116 (342)
T ss_dssp             ----------------------------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT---EEEEEETT
T ss_pred             ----------------------------CccccceecccccccccccccceecccccceeEeeeecccc---cccccccc
Confidence                                        2799999999999999998887766665 555666555554   48888899


Q ss_pred             CeEEEEECCCCCchhcccccc--eeeecc---cccccCCCCcEEEEecCCccce-EEeccCCCeEEEEEcCCCCEEEEEe
Q 005235          440 QDVLILNTGLGNEEEQRRVKD--LLHVET---PTAPDDNMASIVSWLQHDKLDG-IRLRHFKMVSSVEWHRRGDYLSTVM  513 (707)
Q Consensus       440 ~~V~lwd~~~~~~~~~~~~~~--v~~~~~---~~~~~~~d~~i~iW~~~~~~~~-~~~~h~~~V~~v~~sp~g~~lat~s  513 (707)
                      +.+.+|+..++..........  ......   .++.++.++.+++|+....... .+.+|...+..+  ++++.+|++++
T Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~  194 (342)
T d2ovrb2         117 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGS  194 (342)
T ss_dssp             SEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEE
T ss_pred             eeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEe
Confidence            999999998875422211111  111111   1677888999999998765543 355676665555  45789999999


Q ss_pred             CCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC---CCCCeEEEEE
Q 005235          514 PAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET---GLKEVSSIAI  588 (707)
Q Consensus       514 ~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~---~~~~I~sl~~  588 (707)
                      .|+   .|++|++...... ..+ .+...+.++.+++  .+|++++ |+.|++||+...+....+..   |...+.++++
T Consensus       195 ~dg---~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  268 (342)
T d2ovrb2         195 LDT---SIRVWDVETGNCI-HTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF  268 (342)
T ss_dssp             TTS---CEEEEETTTCCEE-EEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE
T ss_pred             CCC---eEEEeecccceee-eEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc
Confidence            998   9999999999887 677 8888898888875  5888888 99999999999888888765   4455666666


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCCcceEEee-----cCCCCEEEEEEcCCCCEEEEEeCCCc----EEEEecc
Q 005235          589 HPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-----CHPKDITNVAFHRSYPLFASCSDDCT----AYVFHGM  653 (707)
Q Consensus       589 spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-----~h~~~I~~vafspdg~llaSgs~Dg~----I~Vwd~~  653 (707)
                      +  ++++++|+.||.|++||+.++ ++++.+.     +|...|++++|+|++.+||+|+.||+    |++||+.
T Consensus       269 ~--~~~~~s~s~Dg~i~iwd~~tg-~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         269 N--KNFVITSSDDGTVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             C--SSEEEEEETTSEEEEEETTTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             C--CCeeEEEcCCCEEEEEECCCC-CEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            5  679999999999999999987 6666664     57788999999999999999999996    9999763

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.1e-27  Score=251.97  Aligned_cols=280  Identities=14%  Similarity=0.168  Sum_probs=196.7

Q ss_pred             cEEEEEeCCCcEEEEeCCCCe-------EEEEEecCCcEEEEE------EccCCCccEEEEEeCCeEEEEECCCCCchhc
Q 005235          389 YLEYKGSTDGTVRIWEVESGR-------CLRVLEIGEAIQYVA------WNPLPELPVLAVSVGQDVLILNTGLGNEEEQ  455 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~-------~l~~l~~~~~V~~v~------~spdg~~~lla~s~d~~V~lwd~~~~~~~~~  455 (707)
                      .+++|||.|++|+|||..++.       ..........+..+.      ++......+++++.|+.|++|++........
T Consensus        25 ~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~  104 (393)
T d1sq9a_          25 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK  104 (393)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred             CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceee
Confidence            379999999999999976543       222222233332222      2222212345667799999998654422110


Q ss_pred             ccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCC-----CCEEEEEeCCCCccEEEEEECCCCc
Q 005235          456 RRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRR-----GDYLSTVMPAGESRAIFMHQLSKKL  530 (707)
Q Consensus       456 ~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~-----g~~lat~s~dg~~~~V~Iwdl~~~~  530 (707)
                                           +......   ......+...+..++|.++     +.+|++++.|+   .+.+|++....
T Consensus       105 ---------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg---~i~vw~~~~~~  157 (393)
T d1sq9a_         105 ---------------------VIFEKLD---LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG---TTYIWKFHPFA  157 (393)
T ss_dssp             ---------------------EEEEEEC---CSCTTGGGSCEEEEEEECCC----CEEEEEEETTS---CEEEEEEESSS
T ss_pred             ---------------------eeccccc---eeeeccCCCceEEEEEecCCCcccccEEEEEcCCC---cEEEEEeecCC
Confidence                                 0000000   0001134556777778765     46899999988   99999975321


Q ss_pred             eee--------------ee---e-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe------CCCCCeEE
Q 005235          531 SHR--------------IP---F-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE------TGLKEVSS  585 (707)
Q Consensus       531 ~~~--------------~~---~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~------~~~~~I~s  585 (707)
                      ...              ..   . .+...+.+++|+|++ +|++|+ |++|+|||+.+++++..+.      +|..+|.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~  236 (393)
T d1sq9a_         158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  236 (393)
T ss_dssp             SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             cccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEE
Confidence            100              01   1 345568899999998 788887 9999999999998876554      57889999


Q ss_pred             EEEcCCCCEEEEEECCCc---EEEEECCCCCcceEEe-------------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005235          586 IAIHPAGDNLIVGSREGK---LCWFDMDLSSKPYRVL-------------KCHPKDITNVAFHRSYPLFASCSDDCTAYV  649 (707)
Q Consensus       586 l~~spdg~~L~sGs~Dg~---I~vwDl~~~~~~~~~l-------------~~h~~~I~~vafspdg~llaSgs~Dg~I~V  649 (707)
                      ++|+|+|.+|++|+.|++   |++||+.++ .++..+             .+|...|++|+|+|++++|||||.|++|+|
T Consensus       237 l~~spdg~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~v  315 (393)
T d1sq9a_         237 VKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF  315 (393)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             cccccccceeeeecCCCCcceeeecccccc-eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEE
Confidence            999999999999999975   899999987 555555             379999999999999999999999999999


Q ss_pred             EecccccCCCCCCcccceEEeeCCCCC-----------------CCCCeeEEEEcCCC----------CEEEEEeCCCcE
Q 005235          650 FHGMVYSDLNQNPLIVPLEILRGHTSS-----------------NGRGVMDCKFHPRQ----------PWLFTAGADSVI  702 (707)
Q Consensus       650 wd~~~~~Dl~~~~~~~pl~~l~gh~~~-----------------~~~gV~~l~fspdg----------~~L~s~g~Dg~I  702 (707)
                      ||+      .++.   ++.+|.+|...                 ...++.++.|.+.+          ..|++++.|+.|
T Consensus       316 Wd~------~~g~---~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  386 (393)
T d1sq9a_         316 WDV------KTKE---RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI  386 (393)
T ss_dssp             EET------TTTE---EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             EEC------CCCC---EEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeE
Confidence            954      4443   47888888532                 02346778877653          358999999999


Q ss_pred             EEEe
Q 005235          703 RLYC  706 (707)
Q Consensus       703 rlWd  706 (707)
                      |+|.
T Consensus       387 r~~~  390 (393)
T d1sq9a_         387 RWFR  390 (393)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.4e-27  Score=245.46  Aligned_cols=224  Identities=14%  Similarity=0.124  Sum_probs=173.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCeEEE--------EEec-CCcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhcc
Q 005235          388 CYLEYKGSTDGTVRIWEVESGRCLR--------VLEI-GEAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQR  456 (707)
Q Consensus       388 ~~~l~sgs~DgtVrIWd~~tg~~l~--------~l~~-~~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~  456 (707)
                      +.++++|+.||+|+|||+.+++...        .+.. .++|.+++|++++. .+++++.  ++.+.+|+..++..    
T Consensus        77 g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~~~~~~~~~~~----  151 (325)
T d1pgua1          77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDSGNS----  151 (325)
T ss_dssp             CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTTCCE----
T ss_pred             CCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC-ccceeeccccceEEEEeeccccc----
Confidence            4589999999999999987643221        1222 68899999999994 5655554  45677777655421    


Q ss_pred             cccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCE-EEEEeCCCCccEEEEEECCCCceeeee
Q 005235          457 RVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDY-LSTVMPAGESRAIFMHQLSKKLSHRIP  535 (707)
Q Consensus       457 ~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~-lat~s~dg~~~~V~Iwdl~~~~~~~~~  535 (707)
                                                    ...+.+|...|.+++|+|++.+ +++++.|+   .|++|++...... ..
T Consensus       152 ------------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~---~v~~~d~~~~~~~-~~  197 (325)
T d1pgua1         152 ------------------------------LGEVSGHSQRINACHLKQSRPMRSMTVGDDG---SVVFYQGPPFKFS-AS  197 (325)
T ss_dssp             ------------------------------EEECCSCSSCEEEEEECSSSSCEEEEEETTT---EEEEEETTTBEEE-EE
T ss_pred             ------------------------------ceeeeecccccccccccccccceEEEeeccc---ccccccccccccc-ee
Confidence                                          1234579999999999999875 67788888   9999999877655 33


Q ss_pred             e----ccCCCeEEEEEeCC-CCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEc---CCCCEEEEEECCCcEEE
Q 005235          536 F----KLHGLPVSSVFHPT-RSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIH---PAGDNLIVGSREGKLCW  606 (707)
Q Consensus       536 ~----~~~~~V~~v~fspd-~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~s---pdg~~L~sGs~Dg~I~v  606 (707)
                      +    .+...|.+++|+|+ +.+|++++ |+.|++||+.+++.+.++.+|...+.++.|+   |+|.+|++|+.|+.|+|
T Consensus       198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~i  277 (325)
T d1pgua1         198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV  277 (325)
T ss_dssp             ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred             cccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEE
Confidence            3    56778999999997 57888887 9999999999999999999888777655554   68999999999999999


Q ss_pred             EECCCCCcceEEeecCCCC--EEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 005235          607 FDMDLSSKPYRVLKCHPKD--ITNVAFHRS-YPLFASCSDDCTAYVFH  651 (707)
Q Consensus       607 wDl~~~~~~~~~l~~h~~~--I~~vafspd-g~llaSgs~Dg~I~Vwd  651 (707)
                      ||+.++ ++++.+..|...  +..+++.+. ..+|++||.||+|+|||
T Consensus       278 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         278 WDVTTS-KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EETTTT-EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             EECCCC-CEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence            999977 788888766654  334444332 34788999999999995

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=7.4e-26  Score=233.01  Aligned_cols=268  Identities=10%  Similarity=0.028  Sum_probs=192.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCe----EEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          389 YLEYKGSTDGTVRIWEVESGR----CLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~----~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      .+|++||.||+|+|||+.++.    +...+.+.++|.+++|+|++...|++++.|+.|++|++.......          
T Consensus        24 ~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~----------   93 (342)
T d1yfqa_          24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ----------   93 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE----------
T ss_pred             CEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccc----------
Confidence            489999999999999987653    334445689999999999875567888899999999976642210          


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee---ee---cc
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI---PF---KL  538 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~---~~---~~  538 (707)
                                             .....+........+.+++..+++++.++   .+.+||+........   ..   ..
T Consensus        94 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~wd~~~~~~~~~~~~~~~~~~~  147 (342)
T d1yfqa_          94 -----------------------ALTNNEANLGICRICKYGDDKLIAASWDG---LIEVIDPRNYGDGVIAVKNLNSNNT  147 (342)
T ss_dssp             -----------------------ECBSCCCCSCEEEEEEETTTEEEEEETTS---EEEEECHHHHTTBCEEEEESCSSSS
T ss_pred             -----------------------ccccccccccccccccccccccccccccc---ccceeeccccccceeeecccccccc
Confidence                                   00112334445566677889999999988   999999865443311   11   12


Q ss_pred             CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeE---EEEEeCCCCCeEEEEEc-CCCCEEEEEECCCcEEEEECCCCC
Q 005235          539 HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRL---IKKLETGLKEVSSIAIH-PAGDNLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~---~~~l~~~~~~I~sl~~s-pdg~~L~sGs~Dg~I~vwDl~~~~  613 (707)
                      ......+.+.+.+..+++++ |+.|++||+.....   ..........+.++.+. .++..+++++.||.+.+|++....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~  227 (342)
T d1yfqa_         148 KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             cceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCc
Confidence            33455677888888888888 99999999986532   22233344455665554 467899999999999999987532


Q ss_pred             cc-----eE---------EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235          614 KP-----YR---------VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR  679 (707)
Q Consensus       614 ~~-----~~---------~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~  679 (707)
                      ..     ..         ....|...|++|+|||++++||||+.||+|+|||+      .+...   +..+..+..    
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~------~~~~~---l~~~~~~~~----  294 (342)
T d1yfqa_         228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL------QTRKK---IKNFAKFNE----  294 (342)
T ss_dssp             CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET------TTTEE---EEECCCCSS----
T ss_pred             ceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEEC------CCCcE---EEEecCCCC----
Confidence            11     11         12356678999999999999999999999999954      34332   556654432    


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          680 GVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       680 gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                       +..++|+|++.+|++|+.|+++++|.
T Consensus       295 -~~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         295 -DSVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             -SEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             -CEEEEEEeCCCEEEEEEcCCcEEEee
Confidence             66788999999999999998877663

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.4e-24  Score=227.48  Aligned_cols=261  Identities=13%  Similarity=0.049  Sum_probs=196.3

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC--eEEEEECCCCCchhcccccceeee
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ--DVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~--~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      ++.++++++ +|.|+|||+.++..++ +.+...|.+++|+||| ..|++++.+.  .|.+|++.++.             
T Consensus        14 dG~~~a~~~-~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~-------------   77 (360)
T d1k32a3          14 DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGK-------------   77 (360)
T ss_dssp             GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCC-------------
T ss_pred             CCCEEEEEE-CCeEEEEECCCCcEEE-ccCCCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCCCc-------------
Confidence            667788776 4789999999888765 4568899999999999 4666666554  67788766542             


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPV  543 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~  543 (707)
                                            ...+..|...|.+++|+|+|++|++++.++   .+.+|++.++... ..+ .+...+.
T Consensus        78 ----------------------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~  131 (360)
T d1k32a3          78 ----------------------AEKFEENLGNVFAMGVDRNGKFAVVANDRF---EIMTVDLETGKPT-VIERSREAMIT  131 (360)
T ss_dssp             ----------------------EEECCCCCCSEEEEEECTTSSEEEEEETTS---EEEEEETTTCCEE-EEEECSSSCCC
T ss_pred             ----------------------EEEeeCCCceEEeeeecccccccceecccc---cccccccccccee-eeeeccccccc
Confidence                                  223557899999999999999999999988   9999999999887 666 7888899


Q ss_pred             EEEEeCCCCEEEEEe-----------CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          544 SSVFHPTRSIFFVST-----------KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       544 ~v~fspd~~~l~v~s-----------dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                      +++|+|+|.+|+.+.           ++.+++||+.+++... +..+...+.+++|+|+|++|++++.++.+.+||....
T Consensus       132 ~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             chhhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            999999999998653           2469999999887654 4456677899999999999999999999999986532


Q ss_pred             C------cceEEeec------------------------------------CCCCEEEEEEcCCC----------C---E
Q 005235          613 S------KPYRVLKC------------------------------------HPKDITNVAFHRSY----------P---L  637 (707)
Q Consensus       613 ~------~~~~~l~~------------------------------------h~~~I~~vafspdg----------~---l  637 (707)
                      .      .....+..                                    ..+....+..++++          .   +
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (360)
T d1k32a3         211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY  290 (360)
T ss_dssp             CEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred             ceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeE
Confidence            1      00111111                                    11122333333322          2   4


Q ss_pred             EEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          638 FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       638 laSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +++++.++.|++|+.      .+..    +..+.+|       |.+++|+|||++|++++.||+|++|++
T Consensus       291 ~~~~~~~~~i~~~d~------~~~~----~~~~~~~-------v~~~~~SpDG~~l~~~~~Dg~i~v~d~  343 (360)
T d1k32a3         291 YQGAPEKGVLLKYDV------KTRK----VTEVKNN-------LTDLRLSADRKTVMVRKDDGKIYTFPL  343 (360)
T ss_dssp             HHCCCCCEEEEEEET------TTCC----EEEEEEE-------EEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred             EEecCCCCEEEEEEC------CCCe----EEEecCC-------cCEEEECCCCCEEEEEECCCeEEEEEC
Confidence            456667889999954      3332    2334333       999999999999999999999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.6e-24  Score=218.86  Aligned_cols=214  Identities=17%  Similarity=0.200  Sum_probs=173.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTA  469 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~  469 (707)
                      .+++++.|++|++|++.+      ......+.++++++++  .+++++.++.+.+|+...+...                
T Consensus        59 ~~~s~s~D~~v~~w~~~~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------------  114 (287)
T d1pgua2          59 EYSSISWDDTLKVNGITK------HEFGSQPKVASANNDG--FTAVLTNDDDLLILQSFTGDII----------------  114 (287)
T ss_dssp             CCEEEETTTEEEETTEEE------EECSSCEEEEEECSSS--EEEEEETTSEEEEEETTTCCEE----------------
T ss_pred             eEEEEeeccccccccccc------cccccceeeeeeccCC--ceEEEeecccceeeeccceeee----------------
Confidence            578999999999999643      2345678899999998  6778888888989886654211                


Q ss_pred             ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEE
Q 005235          470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVF  547 (707)
Q Consensus       470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~f  547 (707)
                                         ....+...  ..++++++..+++++.++  +.|++|++...... ..+  .+.+.+++++|
T Consensus       115 -------------------~~~~~~~~--~~~~~~~~~~~~v~~~~~--~~v~~~~~~~~~~~-~~~~~~~~~~v~~~~~  170 (287)
T d1pgua2         115 -------------------KSVRLNSP--GSAVSLSQNYVAVGLEEG--NTIQVFKLSDLEVS-FDLKTPLRAKPSYISI  170 (287)
T ss_dssp             -------------------EEEECSSC--EEEEEECSSEEEEEETTT--SCEEEEETTEEEEE-EECSSCCSSCEEEEEE
T ss_pred             -------------------eeccccce--eeeeeccCcceeeecccc--ceeeeeecccccee-eeeeeccCCceeEEEe
Confidence                               11122233  345677888999888875  47999999766554 334  67789999999


Q ss_pred             eCCCCEEEEEe-CCeEEEEECCCCeEEEE-EeCCCCCeEEEEEcCC----------CCEEEEEECCCcEEEEECCCCCcc
Q 005235          548 HPTRSIFFVST-KKNIRVYDLLKQRLIKK-LETGLKEVSSIAIHPA----------GDNLIVGSREGKLCWFDMDLSSKP  615 (707)
Q Consensus       548 spd~~~l~v~s-dg~I~iwDl~~~~~~~~-l~~~~~~I~sl~~spd----------g~~L~sGs~Dg~I~vwDl~~~~~~  615 (707)
                      +|++.+|++++ ||.|++||+.++..... +..|...|.+++|+|.          +.+|++|+.|+.|++||+......
T Consensus       171 s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~  250 (287)
T d1pgua2         171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI  250 (287)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC
T ss_pred             ccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE
Confidence            99999999998 89999999999876543 5678899999999875          468999999999999999887678


Q ss_pred             eEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          616 YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       616 ~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      +..+.+|...|++++|+|++ .|++++.||+|+||++
T Consensus       251 ~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         251 IKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            88899999999999999986 5889999999999963

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.3e-23  Score=226.09  Aligned_cols=251  Identities=14%  Similarity=0.109  Sum_probs=169.8

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|.+|+++++   .+++++.|++|+||+..+.+......  .                          ......|...
T Consensus        14 ~~~I~~v~~~~~---~l~S~S~D~~iriWd~~~~~~~~~~~--~--------------------------~~~~~~~~~~   62 (393)
T d1sq9a_          14 DADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKD--K--------------------------SYSHFVHKSG   62 (393)
T ss_dssp             SSCEEEEEECSS---EEEEEETTSEEEEEESBCCTTCCGGG--G--------------------------EEEEECCTTC
T ss_pred             cCccEEEEEeCC---EEEEEECCCeEEEEECCCCCCCcccc--e--------------------------eEeeeeccCC
Confidence            788999999864   59999999999999976654311000  0                          0001122222


Q ss_pred             eEE------EEEcC-CCCEEEEEeCCCCccEEEEEECCCCceee----ee---e---ccCCCeEEEEEeCCC-----CEE
Q 005235          497 VSS------VEWHR-RGDYLSTVMPAGESRAIFMHQLSKKLSHR----IP---F---KLHGLPVSSVFHPTR-----SIF  554 (707)
Q Consensus       497 V~~------v~~sp-~g~~lat~s~dg~~~~V~Iwdl~~~~~~~----~~---~---~~~~~V~~v~fspd~-----~~l  554 (707)
                      +..      +..+. ++.++++++.|+   .|++|++.......    ..   +   .+...+..++|.++.     .++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~s~~~dg---~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (393)
T d1sq9a_          63 LHHVDVLQAIERDAFELCLVATTSFSG---DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL  139 (393)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEEEETTS---CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred             ceEeeeEeeeccCCCCCcEEEEEeCCC---cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEE
Confidence            222      22111 335678899888   99999976443220    01   1   234567788887764     466


Q ss_pred             EEEe-CCeEEEEECCCC---------------eEEEEE---eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q 005235          555 FVST-KKNIRVYDLLKQ---------------RLIKKL---ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP  615 (707)
Q Consensus       555 ~v~s-dg~I~iwDl~~~---------------~~~~~l---~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~  615 (707)
                      ++++ |++|++|++...               ......   ..+...+.+++|+|+| +|++|+.||.|+|||+.++ ++
T Consensus       140 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~-~~  217 (393)
T d1sq9a_         140 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RP  217 (393)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EE
T ss_pred             EEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc-cc
Confidence            7776 999999997421               111111   2344568999999998 8999999999999999876 44


Q ss_pred             eE------EeecCCCCEEEEEEcCCCCEEEEEeCCCc---EEEEecccccCCC----CCCcccceEEeeCCCCCCCCCee
Q 005235          616 YR------VLKCHPKDITNVAFHRSYPLFASCSDDCT---AYVFHGMVYSDLN----QNPLIVPLEILRGHTSSNGRGVM  682 (707)
Q Consensus       616 ~~------~l~~h~~~I~~vafspdg~llaSgs~Dg~---I~Vwd~~~~~Dl~----~~~~~~pl~~l~gh~~~~~~gV~  682 (707)
                      +.      .+.+|..+|++|+|||+|++|++|+.|++   |+|||+.....+.    ..........+.||...    |+
T Consensus       218 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~----V~  293 (393)
T d1sq9a_         218 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW----VM  293 (393)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC----EE
T ss_pred             ccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCc----ee
Confidence            44      34578999999999999999999999975   8999654221100    00111223345689887    99


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          683 DCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       683 ~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +|+|+|++++|+|||.|++|+|||+
T Consensus       294 ~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         294 SLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEET
T ss_pred             eeccCCCCCeeEEECCCCEEEEEEC
Confidence            9999999999999999999999985

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=4.9e-23  Score=224.43  Aligned_cols=308  Identities=8%  Similarity=0.027  Sum_probs=216.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh-------ccccccee
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE-------QRRVKDLL  462 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~-------~~~~~~v~  462 (707)
                      ++++++.||+|+|||+.+++++.++.....+.+|+||||| ..+++++.|++|++||+.++....       ..+...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            5678899999999999999999999998889999999999 477888889999999999886421       13334445


Q ss_pred             eeccc------ccccCCCCcEEEEecCCccceE-Eec-----------cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235          463 HVETP------TAPDDNMASIVSWLQHDKLDGI-RLR-----------HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH  524 (707)
Q Consensus       463 ~~~~~------~~~~~~d~~i~iW~~~~~~~~~-~~~-----------h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw  524 (707)
                      +..|+      ++++..++.+.+|+........ ...           +......+.+++++.+++....+.  +.+.++
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~--~~i~~~  190 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET--GKVLLV  190 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT--TEEEEE
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC--CeEEEE
Confidence            55554      3455578999999988765433 222           334455667777777776665543  467777


Q ss_pred             ECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCC--CeEEEEEcCCCC-EE--E
Q 005235          525 QLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLK--EVSSIAIHPAGD-NL--I  596 (707)
Q Consensus       525 dl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~--~I~sl~~spdg~-~L--~  596 (707)
                      +........... .+...+..++|+|++++++++.  +..+.++++.+++.+..+..+..  +...+.+.+.+. .+  +
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (426)
T d1hzua2         191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST  270 (426)
T ss_dssp             ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred             EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence            766654432333 7778899999999999999987  68899999999998877764322  222333333332 22  2


Q ss_pred             EEECCCcEEEEECCCCC------cceEEeecCCCCEEEEEEcCCCCEEEE-------EeCCCcEEEEecccccCCCCCCc
Q 005235          597 VGSREGKLCWFDMDLSS------KPYRVLKCHPKDITNVAFHRSYPLFAS-------CSDDCTAYVFHGMVYSDLNQNPL  663 (707)
Q Consensus       597 sGs~Dg~I~vwDl~~~~------~~~~~l~~h~~~I~~vafspdg~llaS-------gs~Dg~I~Vwd~~~~~Dl~~~~~  663 (707)
                      +.+.|+.+.+|+.....      +....+.+|...+.+++|||++++|++       ++.|++|+|||+....   ....
T Consensus       271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~---~~~~  347 (426)
T d1hzua2         271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD---AKYQ  347 (426)
T ss_dssp             ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT---SCCE
T ss_pred             ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCC---cCeE
Confidence            33457788888765431      567789999999999999999999994       5678999999654222   1111


Q ss_pred             ccceEE---eeCCCCCCCCCeeEEEEcCCCCEEE-EE----eCCCcEEEEeC
Q 005235          664 IVPLEI---LRGHTSSNGRGVMDCKFHPRQPWLF-TA----GADSVIRLYCH  707 (707)
Q Consensus       664 ~~pl~~---l~gh~~~~~~gV~~l~fspdg~~L~-s~----g~Dg~IrlWdl  707 (707)
                      ..++..   +..|...    |.+++|||||++|+ ++    +.+|.|+|||.
T Consensus       348 ~~~~~~~~~~~~~~~r----v~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         348 VLPIAEWADLGEGAKR----VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             EECHHHHHCCCSSCCC----EEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred             EeccchhcccCCCCcc----EEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence            111111   2233333    99999999999774 43    35788999983

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-22  Score=204.58  Aligned_cols=262  Identities=16%  Similarity=0.177  Sum_probs=201.9

Q ss_pred             ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCC
Q 005235          297 SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPK  374 (707)
Q Consensus       297 synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~  374 (707)
                      +++++|++|+|++.          |+.+  |.......++.+.++...|       +.+.+.                  
T Consensus        20 c~~~d~~~l~sgs~----------Dg~i~vWd~~~~~~~~~l~~H~~~V-------~~v~~~------------------   64 (293)
T d1p22a2          20 CLQYDDQKIVSGLR----------DNTIKIWDKNTLECKRILTGHTGSV-------LCLQYD------------------   64 (293)
T ss_dssp             EEECCSSEEEEEES----------SSCEEEEESSSCCEEEEECCCSSCE-------EEEECC------------------
T ss_pred             EEEEcCCEEEEEeC----------CCeEEEEECCCCcEEEEEecCCCCE-------eeeecc------------------
Confidence            57889999999665          5554  5455666777776666554       333332                  


Q ss_pred             CCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh
Q 005235          375 LPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE  454 (707)
Q Consensus       375 lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~  454 (707)
                                   +.+|++|+.||+|++|++.++....................+  .++++..++.+.+|+........
T Consensus        65 -------------~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  129 (293)
T d1p22a2          65 -------------ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDIT  129 (293)
T ss_dssp             -------------SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCE
T ss_pred             -------------cceeeccccccccccccccccccccccccccccccccccccc--ceeecccccceeEeecccccccc
Confidence                         248999999999999999999888777664444444444444  68888999999999976542210


Q ss_pred             cccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeee
Q 005235          455 QRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRI  534 (707)
Q Consensus       455 ~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~  534 (707)
                                                     .......|...|.++.+.  ..++++++.|+   .|++|++.+.... .
T Consensus       130 -------------------------------~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~---~i~~~d~~~~~~~-~  172 (293)
T d1p22a2         130 -------------------------------LRRVLVGHRAAVNVVDFD--DKYIVSASGDR---TIKVWNTSTCEFV-R  172 (293)
T ss_dssp             -------------------------------EEEEECCCSSCEEEEEEE--TTEEEEEETTS---EEEEEETTTCCEE-E
T ss_pred             -------------------------------ccccccccccccccceec--ccccccccCCC---ceeeecCCCCcEE-E
Confidence                                           011245678888887775  45788899888   9999999999887 7


Q ss_pred             ee-ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          535 PF-KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       535 ~~-~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                      .+ .+...+..+.++  +..+++++ |+.|++||+.+...+..+.++...+.+  +++++.+|++|+.||.|++||+...
T Consensus       173 ~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         173 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             EEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             EEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCC
Confidence            77 777888888776  45788777 999999999999999999988887765  4567889999999999999997532


Q ss_pred             --------CcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          613 --------SKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       613 --------~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                              ..++..+.+|...|++++|+  +.+|||||.||+|+|||
T Consensus       249 ~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         249 LDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence                    24678899999999999995  56799999999999994

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.3e-23  Score=212.05  Aligned_cols=251  Identities=16%  Similarity=0.129  Sum_probs=180.7

Q ss_pred             CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          417 GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      .+.|++|+|+|+++ .|++++.|++|+||++.......                               ......+|...
T Consensus        11 ~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~-------------------------------~~~~~~~h~~~   58 (342)
T d1yfqa_          11 KDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNV-------------------------------DLLQSLRYKHP   58 (342)
T ss_dssp             SSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEE-------------------------------EEEEEEECSSC
T ss_pred             CCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcce-------------------------------EEEEecCCCCC
Confidence            67899999999994 78888899999999976542210                               01124479999


Q ss_pred             eEEEEEcCCC-CEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCe-
Q 005235          497 VSSVEWHRRG-DYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQR-  571 (707)
Q Consensus       497 V~~v~~sp~g-~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~-  571 (707)
                      |.+++|++++ .+|++|+.|+   .|++|++...... ...  .+........+.++...+++++ ++++++||++++. 
T Consensus        59 V~~v~f~~~~~~~l~sg~~d~---~v~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~  134 (342)
T d1yfqa_          59 LLCCNFIDNTDLQIYVGTVQG---EILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             EEEEEEEESSSEEEEEEETTS---CEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred             EEEEEEeCCCCCEEEEccccc---ceeeeeccccccc-ccccccccccccccccccccccccccccccccceeecccccc
Confidence            9999999864 5889999988   9999999988776 444  4444455666777788888877 9999999986532 


Q ss_pred             ---EEEEEeCC--CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc--eEEeecCCCCEEEEEEcC-CCCEEEEEeC
Q 005235          572 ---LIKKLETG--LKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP--YRVLKCHPKDITNVAFHR-SYPLFASCSD  643 (707)
Q Consensus       572 ---~~~~l~~~--~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~--~~~l~~h~~~I~~vafsp-dg~llaSgs~  643 (707)
                         ....+..+  ......+.+.+.+..+++|+.|+.|++||+......  ......+...+.++++.+ ++..+++++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  214 (342)
T d1yfqa_         135 GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             BCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             ceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC
Confidence               22222222  223456677888999999999999999999866422  223334455666666655 6779999999


Q ss_pred             CCcEEEEecccccCCCCCCcccceE------EeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          644 DCTAYVFHGMVYSDLNQNPLIVPLE------ILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       644 Dg~I~Vwd~~~~~Dl~~~~~~~pl~------~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      ||.+.+|+.................      ...+|...    |++++|+|++++|||||.||+|+|||+
T Consensus       215 dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~l~~sp~~~~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP----VNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC----EEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             CCeEEEEEecCCcceeeccccceeeeeeeccCCCccccc----ceeEEecCCccEEEEECCCCEEEEEEC
Confidence            9999999775432222221111111      12234444    899999999999999999999999985

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=2.3e-21  Score=197.65  Aligned_cols=261  Identities=13%  Similarity=0.123  Sum_probs=202.1

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEE-EEEeCCeEEEEECCCCCchhcccccceeeeccccc
Q 005235          391 EYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVL-AVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTA  469 (707)
Q Consensus       391 l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~ll-a~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~  469 (707)
                      .++++.|++|.|||+.+++.++++.....+.+++|+|+|. .++ +++.++.|.+||+.++...                
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~-~l~v~~~~~~~i~v~d~~t~~~~----------------   67 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGT-KVYVANAHSNDVSIIDTATNNVI----------------   67 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS-EEEEEEGGGTEEEEEETTTTEEE----------------
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCC-EEEEEECCCCEEEEEECCCCcee----------------
Confidence            3467899999999999999999999988899999999994 454 4446789999998765221                


Q ss_pred             ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeC
Q 005235          470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP  549 (707)
Q Consensus       470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp  549 (707)
                                         ........+..++|++++.++++++.++  ..+.+|+..++... ..+.....+.+++|+|
T Consensus        68 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  125 (301)
T d1l0qa2          68 -------------------ATVPAGSSPQGVAVSPDGKQVYVTNMAS--STLSVIDTTSNTVA-GTVKTGKSPLGLALSP  125 (301)
T ss_dssp             -------------------EEEECSSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEE-EEEECSSSEEEEEECT
T ss_pred             -------------------eeeecccccccccccccccccccccccc--ceeeecccccceee-eeccccccceEEEeec
Confidence                               1112334578999999999877666543  48999999988776 6666777889999999


Q ss_pred             CCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEECCCCCcceEEeecCCCCE
Q 005235          550 TRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE-GKLCWFDMDLSSKPYRVLKCHPKDI  626 (707)
Q Consensus       550 d~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D-g~I~vwDl~~~~~~~~~l~~h~~~I  626 (707)
                      ++..++++.  ++.+.+|+..+...+..+..+ ..+.+++++|++..+++++.+ +.+.+|+.... .....+.. ...+
T Consensus       126 dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~  202 (301)
T d1l0qa2         126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKV-EAAP  202 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC-SSEE
T ss_pred             CCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccce-eeeecccc-cCCc
Confidence            999988766  789999999999998888765 568899999999999888776 45667776654 55555554 4567


Q ss_pred             EEEEEcCCCCEEEEEe---CCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE-EEEeCCCcE
Q 005235          627 TNVAFHRSYPLFASCS---DDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL-FTAGADSVI  702 (707)
Q Consensus       627 ~~vafspdg~llaSgs---~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L-~s~g~Dg~I  702 (707)
                      ..++|++++..++.++   .+++|.+||.      .+...   +..+..+..     +.+++|+|+|++| ++++.|++|
T Consensus       203 ~~~~~~~~g~~~~v~~~~~~~~~v~v~D~------~t~~~---~~~~~~~~~-----~~~va~spdg~~l~va~~~~~~i  268 (301)
T d1l0qa2         203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDT------GTNKI---TARIPVGPD-----PAGIAVTPDGKKVYVALSFCNTV  268 (301)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEET------TTTEE---EEEEECCSS-----EEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceeeccccccccccccccceeeeeeeeec------CCCeE---EEEEcCCCC-----EEEEEEeCCCCEEEEEECCCCeE
Confidence            8899999999776554   3468999954      44433   455554433     8999999999987 577789999


Q ss_pred             EEEeC
Q 005235          703 RLYCH  707 (707)
Q Consensus       703 rlWdl  707 (707)
                      ++||+
T Consensus       269 ~v~D~  273 (301)
T d1l0qa2         269 SVIDT  273 (301)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99985

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.2e-20  Score=195.04  Aligned_cols=270  Identities=11%  Similarity=0.026  Sum_probs=196.3

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEE-EEeCCeEEEEECCCCCchhcccccceeee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLA-VSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla-~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      .++++++.|++|.|||+.+++++.++..   ...+.+++|+|||. .+++ ++.++.|.+||+.++....          
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~-~l~v~~~~~~~v~v~D~~t~~~~~----------   70 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKIDLVTGETLG----------   70 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS-EEEEEETTTTEEEEEETTTCCEEE----------
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCC-EEEEEECCCCeEEEEECCCCcEEE----------
Confidence            4799999999999999999999999976   45688999999994 4544 4468899999988764311          


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC---------CccEEEEEECCCCceeeee
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG---------ESRAIFMHQLSKKLSHRIP  535 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg---------~~~~V~Iwdl~~~~~~~~~  535 (707)
                                    ......     ...+...+..++|+|+|+++++++.+.         ....+.+||..+.... ..
T Consensus        71 --------------~~~~~~-----~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~  130 (337)
T d1pbyb_          71 --------------RIDLST-----PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR-KA  130 (337)
T ss_dssp             --------------EEECCB-----TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE-EE
T ss_pred             --------------EEecCC-----CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEE-Ee
Confidence                          110000     001223456799999999998886432         2348899999998876 66


Q ss_pred             eccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC----------------------
Q 005235          536 FKLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD----------------------  593 (707)
Q Consensus       536 ~~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~----------------------  593 (707)
                      +.....+.+++|+|++.++++++ +.+.+||..+++....+..+... ....++|++.                      
T Consensus       131 ~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (337)
T d1pbyb_         131 FEAPRQITMLAWARDGSKLYGLG-RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKD  208 (337)
T ss_dssp             EECCSSCCCEEECTTSSCEEEES-SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred             ccccCCceEEEEcCCCCEEEEEc-CCcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeec
Confidence            76667788999999999999875 55788999999988887654321 1112222221                      


Q ss_pred             --EEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEee
Q 005235          594 --NLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR  671 (707)
Q Consensus       594 --~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~  671 (707)
                        .+..++.++.+.+||+.++......+..+...+..++++|++.+++++  ++.|++||      +.+...   +..+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d------~~~~~~---~~~~~  277 (337)
T d1pbyb_         209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFD------LEKNAS---IKRVP  277 (337)
T ss_dssp             SCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEE------TTTTEE---EEEEE
T ss_pred             cceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEE------CCCCcE---EEEEc
Confidence              111122345689999988755555667788889999999999988766  58999995      444443   44443


Q ss_pred             CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          672 GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       672 gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                       +...    +.+++|+|+|.+|++++.||+|++||.
T Consensus       278 -~~~~----~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         278 -LPHS----YYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             -CSSC----CCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             -CCCC----EEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence             2333    899999999999999999999999985

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=4.4e-19  Score=193.73  Aligned_cols=304  Identities=8%  Similarity=0.019  Sum_probs=207.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh-------ccccccee
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE-------QRRVKDLL  462 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~-------~~~~~~v~  462 (707)
                      ++++.+.||+|.|||+.+++++..+.....+..++||||| +++++++.|++|.+||+.++....       ..+...+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            4689999999999999999999999998889999999999 477788889999999998875421       12333444


Q ss_pred             eeccc------ccccCCCCcEEEEecCCccceE-E-----------eccCCCeEEEEEcCCCCEEEEEe-CCCCccEEEE
Q 005235          463 HVETP------TAPDDNMASIVSWLQHDKLDGI-R-----------LRHFKMVSSVEWHRRGDYLSTVM-PAGESRAIFM  523 (707)
Q Consensus       463 ~~~~~------~~~~~~d~~i~iW~~~~~~~~~-~-----------~~h~~~V~~v~~sp~g~~lat~s-~dg~~~~V~I  523 (707)
                      +..|+      ++++..++.+.+|+..+..... .           ..+......+.++++|.+++... .++   .|.+
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~---~i~~  189 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG---KILL  189 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT---EEEE
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC---eEEE
Confidence            55553      4667789999999988665432 1           23455677889999998876554 444   9999


Q ss_pred             EECCCCceee-eeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCC-----CCCeEEEEEcCCCCEE
Q 005235          524 HQLSKKLSHR-IPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETG-----LKEVSSIAIHPAGDNL  595 (707)
Q Consensus       524 wdl~~~~~~~-~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~-----~~~I~sl~~spdg~~L  595 (707)
                      |+........ ..+.....+.+++|+|+++++++++  ++.|.++|+.+++.+..+..+     ........+...+...
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~  269 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW  269 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             EEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCcee
Confidence            9998876541 2336667889999999999998887  689999999999888776543     2334445555455455


Q ss_pred             EEEE-CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc---------------CCC
Q 005235          596 IVGS-REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYS---------------DLN  659 (707)
Q Consensus       596 ~sGs-~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~---------------Dl~  659 (707)
                      ++.. .++.|.+|+.....     +..|...|....++|++..+++++.+.++++|......               .+.
T Consensus       270 ~~~~lg~~~v~~~~~~~~~-----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la  344 (432)
T d1qksa2         270 ATSHMGDDSVALIGTDPEG-----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMT  344 (432)
T ss_dssp             EEEBSSSSEEEEEECCTTT-----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCC
T ss_pred             cccccCCceEEeccccccc-----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhc
Confidence            4443 36788888765431     22344556666666666656666555555555422100               111


Q ss_pred             CCCcccceEE--------eeCCCCCCCCCeeEEEEcCCCCEEEEEe-----CCCcEEEEe
Q 005235          660 QNPLIVPLEI--------LRGHTSSNGRGVMDCKFHPRQPWLFTAG-----ADSVIRLYC  706 (707)
Q Consensus       660 ~~~~~~pl~~--------l~gh~~~~~~gV~~l~fspdg~~L~s~g-----~Dg~IrlWd  706 (707)
                      .......++.        +..|...    |.+++|+|||++|+.+.     .+|.|+|||
T Consensus       345 ~~s~d~~~k~w~~~~~~~l~~~~~~----v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         345 GDGSDPEFKTLPIAEWAGITEGQPR----VVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             CSSSCCCEEEECHHHHHTCCSSCCE----EEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             ccccCCceEecccccccccCCCCCc----EEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            1111111111        2234444    99999999999885443     468899998

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=1.6e-20  Score=204.20  Aligned_cols=301  Identities=10%  Similarity=0.029  Sum_probs=199.4

Q ss_pred             ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEe
Q 005235          325 FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWE  404 (707)
Q Consensus       325 ~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd  404 (707)
                      |...++..++.++....        ...+.|+|+++                             ++|+++.||+|++||
T Consensus        47 wD~~t~~~~~~l~~g~~--------~~~vafSPDGk-----------------------------~l~~~~~d~~v~vwd   89 (426)
T d1hzua2          47 VDGDSKKIVKVIDTGYA--------VHISRMSASGR-----------------------------YLLVIGRDARIDMID   89 (426)
T ss_dssp             EETTTCSEEEEEECCSS--------EEEEEECTTSC-----------------------------EEEEEETTSEEEEEE
T ss_pred             EECCCCcEEEEEeCCCC--------eeEEEECCCCC-----------------------------EEEEEeCCCCEEEEE
Confidence            44556777777765432        25678887764                             899999999999999


Q ss_pred             CCCCeEEEEE--ec----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCch--hcccccceeeeccc------ccc
Q 005235          405 VESGRCLRVL--EI----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE--EQRRVKDLLHVETP------TAP  470 (707)
Q Consensus       405 ~~tg~~l~~l--~~----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~--~~~~~~~v~~~~~~------~~~  470 (707)
                      +.++++....  ..    .+.+.+++|+|||...++++..++.+.+||..++...  ...+...+....+.      .+.
T Consensus        90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (426)
T d1hzua2          90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII  169 (426)
T ss_dssp             TTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             ccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEE
Confidence            9998765443  33    3445667788899533344557899999999887542  11122211111111      122


Q ss_pred             cCCC-----------CcEEEEecCCccc--eEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-
Q 005235          471 DDNM-----------ASIVSWLQHDKLD--GIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-  536 (707)
Q Consensus       471 ~~~d-----------~~i~iW~~~~~~~--~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-  536 (707)
                      .+.+           +.+.++.......  .....+...+..+.|+|+|++++++..+.  ..+.++++..+... ..+ 
T Consensus       170 ~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~--~~~~~~~~~~~~~~-~~~~  246 (426)
T d1hzua2         170 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNS--NKVAVIDSKDRRLS-ALVD  246 (426)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTC--SEEEEEETTTTEEE-EEEE
T ss_pred             ECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecc--cceeeeecccccEE-EEec
Confidence            2223           3333443333222  12457788899999999999998888654  48999999988876 444 


Q ss_pred             --ccCCCeEEEEEeCCCC--EEEEEe--CCeEEEEECCC-------CeEEEEEeCCCCCeEEEEEcCCCCEEEE------
Q 005235          537 --KLHGLPVSSVFHPTRS--IFFVST--KKNIRVYDLLK-------QRLIKKLETGLKEVSSIAIHPAGDNLIV------  597 (707)
Q Consensus       537 --~~~~~V~~v~fspd~~--~l~v~s--dg~I~iwDl~~-------~~~~~~l~~~~~~I~sl~~spdg~~L~s------  597 (707)
                        ........+.+...+.  .+++..  ++.+.+|+...       .+...++.+|...+.+++|||+|.+|++      
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~  326 (426)
T d1hzua2         247 VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP  326 (426)
T ss_dssp             CSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCS
T ss_pred             cCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCC
Confidence              2333344445444333  233332  78888888654       3788899999999999999999999995      


Q ss_pred             -EECCCcEEEEECCCCCcceEE--------eecCCCCEEEEEEcCCCCEE-EEE----eCCCcEEEEecccccCCCCCCc
Q 005235          598 -GSREGKLCWFDMDLSSKPYRV--------LKCHPKDITNVAFHRSYPLF-ASC----SDDCTAYVFHGMVYSDLNQNPL  663 (707)
Q Consensus       598 -Gs~Dg~I~vwDl~~~~~~~~~--------l~~h~~~I~~vafspdg~ll-aSg----s~Dg~I~Vwd~~~~~Dl~~~~~  663 (707)
                       |+.+++|+|||+.++......        +..|...|.+++|||||+++ +++    +.+|.|+|||..      +...
T Consensus       327 s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~------T~k~  400 (426)
T d1hzua2         327 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK------TLKL  400 (426)
T ss_dssp             SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT------TTEE
T ss_pred             CcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC------CCeE
Confidence             556889999999987443333        22456679999999999965 443    367899999543      3332


Q ss_pred             ccceEEeeCCC
Q 005235          664 IVPLEILRGHT  674 (707)
Q Consensus       664 ~~pl~~l~gh~  674 (707)
                         ...+.++.
T Consensus       401 ---~~~i~~~~  408 (426)
T d1hzua2         401 ---KAVVKDPR  408 (426)
T ss_dssp             ---EEEECCTT
T ss_pred             ---EEEECCCC
Confidence               45566654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=4.8e-20  Score=191.05  Aligned_cols=276  Identities=7%  Similarity=-0.065  Sum_probs=196.7

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      |..++.++++++.|++|.|||+.+++++.++..  ...+.+++|+|||. .+++++ .++.|.+||+.++...       
T Consensus         4 ~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~-~l~v~~~~~~~v~~~d~~t~~~~-------   75 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR-TAYVLNNHYGDIYGIDLDTCKNT-------   75 (346)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS-EEEEEETTTTEEEEEETTTTEEE-------
T ss_pred             CCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCC-EEEEEECCCCcEEEEeCccCeee-------
Confidence            566778999999999999999999999998886  55788999999994 454444 6789999998776321       


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC---------CccEEEEEECCCCce
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG---------ESRAIFMHQLSKKLS  531 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg---------~~~~V~Iwdl~~~~~  531 (707)
                                       .........    ..+...+..++|+|+|+++++++.+.         ....+.+|+..++..
T Consensus        76 -----------------~~~~~~~~~----~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  134 (346)
T d1jmxb_          76 -----------------FHANLSSVP----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  134 (346)
T ss_dssp             -----------------EEEESCCST----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             -----------------eeecccccc----cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence                             111110000    01223456799999999998776321         234788999887765


Q ss_pred             eeeee---ccCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCE--------------
Q 005235          532 HRIPF---KLHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDN--------------  594 (707)
Q Consensus       532 ~~~~~---~~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~--------------  594 (707)
                      . ..+   .....+..+.+++++.+++.  ++.+.+|++.+++.+..+..+ .....+.++|++..              
T Consensus       135 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (346)
T d1jmxb_         135 A-KPVRTFPMPRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSML  210 (346)
T ss_dssp             B-CCSEEEECCSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred             e-eEEEeeeccCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEee
Confidence            5 333   33455667777777765543  466899999999988888655 33444455555432              


Q ss_pred             ------------EEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCC
Q 005235          595 ------------LIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNP  662 (707)
Q Consensus       595 ------------L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~  662 (707)
                                  +++++.++.+.+||+.++......+..|...+.++.+++++.++++++. +.|.+||.      .+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~------~~~~  283 (346)
T d1jmxb_         211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDL------KQRK  283 (346)
T ss_dssp             EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEET------TTTE
T ss_pred             eeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEEC------CCCc
Confidence                        2333445668889998876566667788899999999999888877664 57999954      4443


Q ss_pred             cccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          663 LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       663 ~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      .   +..+.. ...    +.+++|+|||++|++++.||.|++||+
T Consensus       284 ~---~~~~~~-~~~----~~~va~s~DG~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         284 L---IKAANL-DHT----YYCVAFDKKGDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             E---EEEEEC-SSC----CCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             E---EEEEcC-CCC----EEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            3   444432 222    899999999999999999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=2.5e-20  Score=194.60  Aligned_cols=191  Identities=9%  Similarity=-0.050  Sum_probs=159.9

Q ss_pred             EEEEcc-CCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEE
Q 005235          422 YVAWNP-LPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSV  500 (707)
Q Consensus       422 ~v~~sp-dg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v  500 (707)
                      .-.||| ||  .+++.+..+.|++|++..+..                                    ....|...|.++
T Consensus         7 ~~~fSP~dG--~~~a~~~~g~v~v~d~~~~~~------------------------------------~~~~~~~~v~~~   48 (360)
T d1k32a3           7 AEDFSPLDG--DLIAFVSRGQAFIQDVSGTYV------------------------------------LKVPEPLRIRYV   48 (360)
T ss_dssp             EEEEEECGG--GCEEEEETTEEEEECTTSSBE------------------------------------EECSCCSCEEEE
T ss_pred             cccccCCCC--CEEEEEECCeEEEEECCCCcE------------------------------------EEccCCCCEEEE
Confidence            457999 88  567777888999998755411                                    234789999999


Q ss_pred             EEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeCC
Q 005235          501 EWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLETG  579 (707)
Q Consensus       501 ~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~~  579 (707)
                      +|+|+|++|++++.+. ...|++||+.++... ....+.+.|.+++|+|++++|++++ ++.+++|++.+++....+..+
T Consensus        49 ~~spDg~~l~~~~~~~-g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1k32a3          49 RRGGDTKVAFIHGTRE-GDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR  126 (360)
T ss_dssp             EECSSSEEEEEEEETT-EEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             EECCCCCEEEEEEcCC-CCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecc
Confidence            9999999999887654 357999999988765 4448999999999999999999988 899999999999999999999


Q ss_pred             CCCeEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005235          580 LKEVSSIAIHPAGDNLIVGS----------REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYV  649 (707)
Q Consensus       580 ~~~I~sl~~spdg~~L~sGs----------~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~V  649 (707)
                      ...+.+++|+|+|++|+.++          .++.+++||+.++ . ...+..|...+..++|+|+|+.|++++.|+.+.+
T Consensus       127 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~-~-~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~  204 (360)
T d1k32a3         127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-K-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS  204 (360)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-E-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred             cccccchhhccceeeeeeeccccccceeeccccceeeeccccC-c-eeeecccccccccccccCCCCEEEEEeCCCceEc
Confidence            88999999999999998654          3456899999865 3 4455567788999999999999999999999999


Q ss_pred             Eeccc
Q 005235          650 FHGMV  654 (707)
Q Consensus       650 wd~~~  654 (707)
                      |+...
T Consensus       205 ~d~~~  209 (360)
T d1k32a3         205 PDRVV  209 (360)
T ss_dssp             ECSSS
T ss_pred             ccccc
Confidence            97543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.83  E-value=8.1e-18  Score=170.84  Aligned_cols=222  Identities=14%  Similarity=0.132  Sum_probs=175.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTA  469 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~  469 (707)
                      ++++++.++.|++||+.+++++..+.....+..++|++++...++++..+..+.+|+..++.                  
T Consensus        46 l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  107 (301)
T d1l0qa2          46 VYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT------------------  107 (301)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE------------------
T ss_pred             EEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccce------------------
Confidence            44677889999999999999999999878889999999995333333455677788765541                  


Q ss_pred             ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeC
Q 005235          470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHP  549 (707)
Q Consensus       470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fsp  549 (707)
                                       ......+...+.+++|+|+|.+++.++...  ..+.+|+..+.... ..+.....+.+++++|
T Consensus       108 -----------------~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  167 (301)
T d1l0qa2         108 -----------------VAGTVKTGKSPLGLALSPDGKKLYVTNNGD--KTVSVINTVTKAVI-NTVSVGRSPKGIAVTP  167 (301)
T ss_dssp             -----------------EEEEEECSSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEE-EEEECCSSEEEEEECT
T ss_pred             -----------------eeeeccccccceEEEeecCCCeeeeeeccc--cceeeeecccccee-eecccCCCceEEEeec
Confidence                             122335566788999999999887665432  38999999998876 6666667789999999


Q ss_pred             CCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeecCCC
Q 005235          550 TRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKCHPK  624 (707)
Q Consensus       550 d~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~h~~  624 (707)
                      ++..+++++  .+.+.+|+....+....+..+ ..+..++|+++|..+++++.+   +.|.+||+.++ +.+..+..+ .
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-~~~~~~~~~-~  244 (301)
T d1l0qa2         168 DGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVG-P  244 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECC-S
T ss_pred             cccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCC-eEEEEEcCC-C
Confidence            999998887  478889998888888777665 557889999999988776543   67999999887 667777644 5


Q ss_pred             CEEEEEEcCCCCEE-EEEeCCCcEEEEec
Q 005235          625 DITNVAFHRSYPLF-ASCSDDCTAYVFHG  652 (707)
Q Consensus       625 ~I~~vafspdg~ll-aSgs~Dg~I~Vwd~  652 (707)
                      .+.+++|+|+|++| ++++.|++|+|||+
T Consensus       245 ~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         245 DPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence            68999999999965 68888999999954

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=8.7e-18  Score=173.50  Aligned_cols=273  Identities=9%  Similarity=0.076  Sum_probs=187.5

Q ss_pred             EEEEEeCCCcEEEEeCCCC---eEEEEEecCCcEEEEEEccCCCccEEEEEe-CCeEEEEECCCCCchhcccccceeeec
Q 005235          390 LEYKGSTDGTVRIWEVESG---RCLRVLEIGEAIQYVAWNPLPELPVLAVSV-GQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg---~~l~~l~~~~~V~~v~~spdg~~~lla~s~-d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      ++++++.|++|+||++.+.   +.+..+...+.|.+|+|+|||. .|++++. ++.|.+|++.......           
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~-~L~v~~~~d~~i~~~~i~~~~~~~-----------   73 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGAL-----------   73 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCE-----------
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCC-EEEEEECCCCeEEEEEEeCCCCcE-----------
Confidence            5678889999999998754   4455666789999999999994 5655554 7899999976542211           


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCe
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLP  542 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V  542 (707)
                                  ..        .....+...+..++|+|+|++|++++.++  ..|.+|+....... ...   .+...+
T Consensus        74 ------------~~--------~~~~~~~~~p~~l~~spDg~~l~v~~~~~--~~v~~~~~~~~~~~-~~~~~~~~~~~~  130 (333)
T d1ri6a_          74 ------------TF--------AAESALPGSLTHISTDHQGQFVFVGSYNA--GNVSVTRLEDGLPV-GVVDVVEGLDGC  130 (333)
T ss_dssp             ------------EE--------EEEEECSSCCSEEEECTTSSEEEEEETTT--TEEEEEEEETTEEE-EEEEEECCCTTB
T ss_pred             ------------EE--------eeecccCCCceEEEEcCCCCEEeecccCC--Cceeeeccccccce-ecccccCCCccc
Confidence                        00        01224456678899999999999988643  48999988776554 322   566778


Q ss_pred             EEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEE------EEeCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCC
Q 005235          543 VSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIK------KLETGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMDLSS  613 (707)
Q Consensus       543 ~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~------~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~~~~  613 (707)
                      .++.|+|++++++++.  +..|.+|++.......      ...........++|++++..++... ..+...+++.....
T Consensus       131 ~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~  210 (333)
T d1ri6a_         131 HSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH  210 (333)
T ss_dssp             CCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred             eEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccc
Confidence            8999999999998887  5889999987642211      1112335578999999998887655 45668888876543


Q ss_pred             cceE---Eee------cCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeE
Q 005235          614 KPYR---VLK------CHPKDITNVAFHRSYPLFA-SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMD  683 (707)
Q Consensus       614 ~~~~---~l~------~h~~~I~~vafspdg~lla-Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~  683 (707)
                      ..+.   .+.      ........+++++++++++ ++..++.+.+|...      .......+.....+...    +.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----p~~  280 (333)
T d1ri6a_         211 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS------EDGSVLSKEGFQPTETQ----PRG  280 (333)
T ss_dssp             SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC------TTSCCEEEEEEEECSSS----CCC
T ss_pred             cceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEc------CCCCEEEEEEEeCCCCC----eeE
Confidence            2222   221      1234567889999998555 55577899999543      22221112222222222    788


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEeC
Q 005235          684 CKFHPRQPWLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       684 l~fspdg~~L~s~g-~Dg~IrlWdl  707 (707)
                      ++|+|||++|++++ .+++|++|++
T Consensus       281 ~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         281 FNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             EEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEE
Confidence            99999999987776 4689999953

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=3e-18  Score=176.60  Aligned_cols=230  Identities=9%  Similarity=0.035  Sum_probs=163.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecC------CcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIG------EAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~------~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      ++++++.++.|.+||+.+|+.+..+...      ..+..++|+|++. .+++++.+.....|..                
T Consensus        48 l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~----------------  110 (337)
T d1pbyb_          48 AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHF----------------  110 (337)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCE----------------
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCc-EEEEeecCCcceeeec----------------
Confidence            4467788999999999999999888762      2345899999994 5666665544433321                


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeE
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPV  543 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~  543 (707)
                             ...+..+.+|+...........+...+.+++|+++|.++++++.     .+.+||..++... ..+.......
T Consensus       111 -------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~~d~~~~~~~-~~~~~~~~~~  177 (337)
T d1pbyb_         111 -------EVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR-----DLHVMDPEAGTLV-EDKPIQSWEA  177 (337)
T ss_dssp             -------EECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS-----SEEEEETTTTEEE-EEECSTTTTT
T ss_pred             -------cccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC-----CcceeeeecCcEE-EEeecCCccc
Confidence                   12345667777776666555566778899999999999998875     5678999887665 4442211111


Q ss_pred             EEEEeCCCCE------------------------EEEEe-CCeEEEEECCCCeEEE-EEeCCCCCeEEEEEcCCCCEEEE
Q 005235          544 SSVFHPTRSI------------------------FFVST-KKNIRVYDLLKQRLIK-KLETGLKEVSSIAIHPAGDNLIV  597 (707)
Q Consensus       544 ~v~fspd~~~------------------------l~v~s-dg~I~iwDl~~~~~~~-~l~~~~~~I~sl~~spdg~~L~s  597 (707)
                      ...+.|++..                        +..++ ++.+.+|++.++.... .+..+...+.+++++|++.++++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (337)
T d1pbyb_         178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG  257 (337)
T ss_dssp             TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE
Confidence            1122222111                        01111 3569999999886554 35566677899999999999887


Q ss_pred             EECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 005235          598 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGM  653 (707)
Q Consensus       598 Gs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~  653 (707)
                      +  ++.|++||+.++ +.+..+. +...+.+++|+|+|++|++++.||+|+|||..
T Consensus       258 ~--~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         258 A--YNVLESFDLEKN-ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             E--ESEEEEEETTTT-EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             c--cccEEEEECCCC-cEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            6  478999999987 6666665 56678999999999999999999999999543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.73  E-value=2.3e-17  Score=170.55  Aligned_cols=278  Identities=12%  Similarity=0.026  Sum_probs=182.0

Q ss_pred             ccCCCCCccCChhhhhhhhccCcCCCCc--ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCC
Q 005235          297 SYNPSLEYIPTQEELNSYQLMYEEDRPK--FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPK  374 (707)
Q Consensus       297 synP~ge~L~s~~~~~~W~~~~~~dr~~--~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~  374 (707)
                      +|++.++||++...          +..+  |...+...++.++.-..      .....+.++|+++              
T Consensus         3 a~~~~~~~l~~~~~----------~~~v~v~D~~t~~~~~t~~~~~~------~~p~~l~~spDG~--------------   52 (346)
T d1jmxb_           3 ALKAGHEYMIVTNY----------PNNLHVVDVASDTVYKSCVMPDK------FGPGTAMMAPDNR--------------   52 (346)
T ss_dssp             CCCTTCEEEEEEET----------TTEEEEEETTTTEEEEEEECSSC------CSSCEEEECTTSS--------------
T ss_pred             cCCCCCcEEEEEcC----------CCEEEEEECCCCCEEEEEEcCCC------CCcceEEECCCCC--------------
Confidence            68999999998655          3333  44555555554431111      1124677777654              


Q ss_pred             CCCCCCCcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecC-------CcEEEEEEccCCCccEEEEEeCCeEEEEEC
Q 005235          375 LPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIG-------EAIQYVAWNPLPELPVLAVSVGQDVLILNT  447 (707)
Q Consensus       375 lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~-------~~V~~v~~spdg~~~lla~s~d~~V~lwd~  447 (707)
                                    .++++++.++.|.+||+.+++.+..+...       ..+..++|+|||. .+++++.+.....+. 
T Consensus        53 --------------~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~-  116 (346)
T d1jmxb_          53 --------------TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDH-  116 (346)
T ss_dssp             --------------EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSC-
T ss_pred             --------------EEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCC-EEEEEecCCcceeee-
Confidence                          24567778999999999999999888762       2356899999994 555555432222111 


Q ss_pred             CCCCchhcccccceeeecccccccCCCCcEEEEecCCccceE---EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEE
Q 005235          448 GLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGI---RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMH  524 (707)
Q Consensus       448 ~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~---~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iw  524 (707)
                                            ....+..+.+|+........   .......+..+.+++++..+++++      .+.+|
T Consensus       117 ----------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  168 (346)
T d1jmxb_         117 ----------------------YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP------DIYKM  168 (346)
T ss_dssp             ----------------------EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESS------SEEEE
T ss_pred             ----------------------eccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCC------cceEE
Confidence                                  11124455566555433211   222344566677777777665432      67889


Q ss_pred             ECCCCceeeeeeccCCCeEEEEEeCCCCEE--------------------------EEEe-CCeEEEEECCCCeEEE-EE
Q 005235          525 QLSKKLSHRIPFKLHGLPVSSVFHPTRSIF--------------------------FVST-KKNIRVYDLLKQRLIK-KL  576 (707)
Q Consensus       525 dl~~~~~~~~~~~~~~~V~~v~fspd~~~l--------------------------~v~s-dg~I~iwDl~~~~~~~-~l  576 (707)
                      ++.++... ..+.....+..+.++|++..+                          +++. +..+.+||+.++.... .+
T Consensus       169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (346)
T d1jmxb_         169 DVKTGKYT-VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF  247 (346)
T ss_dssp             CTTTCCEE-EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred             EccCCCEE-EEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEe
Confidence            98887765 555333333444444444322                          2222 4668889998876544 34


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          577 ETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       577 ~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                      ..+...+.++.+++++.+++++.. +.|.+||+.++ +.+..+. +...+.+++|||||++|++++.||.|+|||.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~-~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         248 ADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQR-KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             EECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTT-EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             ecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCC-cEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            567778899999999988887765 57999999877 6666665 4557899999999999999999999999954

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=2.5e-15  Score=163.53  Aligned_cols=284  Identities=7%  Similarity=-0.040  Sum_probs=181.5

Q ss_pred             ccCcccceecccccccccccccceeeeeEEEcCccccceeecCCCCCCCCCCCCCCCcccCCCCcEEEEEeCCCcEEEEe
Q 005235          325 FIPRRFTSLRSVPAYENAVKDSFERCMDLYLCPRVRKKRVNIDPETLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWE  404 (707)
Q Consensus       325 ~lp~~~~~lr~v~~~~~~i~e~f~rcldL~l~pr~~k~~lnidp~~llp~lp~~~~l~pfp~~~~~l~sgs~DgtVrIWd  404 (707)
                      |.+..+..++.++....        ...+.|+|+++                             ++|+++.||+|++||
T Consensus        47 ~D~~t~~v~~~~~~g~~--------~~~v~fSpDG~-----------------------------~l~~~s~dg~v~~~d   89 (432)
T d1qksa2          47 IDGSTYEIKTVLDTGYA--------VHISRLSASGR-----------------------------YLFVIGRDGKVNMID   89 (432)
T ss_dssp             EETTTCCEEEEEECSSC--------EEEEEECTTSC-----------------------------EEEEEETTSEEEEEE
T ss_pred             EECCCCcEEEEEeCCCC--------eeEEEECCCCC-----------------------------EEEEEcCCCCEEEEE
Confidence            55677778888765432        25677887764                             899999999999999


Q ss_pred             CCCCeE--EEEEec----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchh--cc-----------cccceeeec
Q 005235          405 VESGRC--LRVLEI----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE--QR-----------RVKDLLHVE  465 (707)
Q Consensus       405 ~~tg~~--l~~l~~----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~--~~-----------~~~~v~~~~  465 (707)
                      +.+++.  +..+..    .+.+.+++|+|||...++++..++.|.+||..++....  ..           .......+.
T Consensus        90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (432)
T d1qksa2          90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL  169 (432)
T ss_dssp             TTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred             eeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEE
Confidence            988763  444444    34455566778995334566779999999998875421  11           111112222


Q ss_pred             cc------ccccCCCCcEEEEecCCccce--EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-
Q 005235          466 TP------TAPDDNMASIVSWLQHDKLDG--IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-  536 (707)
Q Consensus       466 ~~------~~~~~~d~~i~iW~~~~~~~~--~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-  536 (707)
                      ++      +++...++.+.+|+.......  ....+...+.+++|+|+|+++++++.++  ..+.+++..+.... ..+ 
T Consensus       170 ~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~--~~v~v~d~~~~~~~-~~~~  246 (432)
T d1qksa2         170 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR--NKLVVIDTKEGKLV-AIED  246 (432)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG--TEEEEEETTTTEEE-EEEE
T ss_pred             ECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecccc--ceEEEeecccceEE-EEec
Confidence            22      345566788899988765432  2446677889999999999998888754  48999999887665 333 


Q ss_pred             -----ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCC-------eEEEEEeCCCCC--------------------
Q 005235          537 -----KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQ-------RLIKKLETGLKE--------------------  582 (707)
Q Consensus       537 -----~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~-------~~~~~l~~~~~~--------------------  582 (707)
                           .+........+...+....+..  ++.|.+|+....       +....+..+...                    
T Consensus       247 ~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~  326 (432)
T d1qksa2         247 TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN  326 (432)
T ss_dssp             CSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC
T ss_pred             cCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC
Confidence                 1233344444444555555554  678888876542       233333222111                    


Q ss_pred             -----eEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEec
Q 005235          583 -----VSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCS-----DDCTAYVFHG  652 (707)
Q Consensus       583 -----I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs-----~Dg~I~Vwd~  652 (707)
                           ..++++ |++..|++++.|+.+++||+.+.    ..+..|...|.+++|||||+.++.+.     .+|.|.|||.
T Consensus       327 ~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~----~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         327 PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEW----AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHH----HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             CCCCeeeEEEE-EechhhcccccCCceEecccccc----cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence                 112332 56666666666777777766433    11235677899999999999775443     4688999964


Q ss_pred             c
Q 005235          653 M  653 (707)
Q Consensus       653 ~  653 (707)
                      .
T Consensus       402 ~  402 (432)
T d1qksa2         402 K  402 (432)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=2.1e-15  Score=157.06  Aligned_cols=273  Identities=11%  Similarity=-0.009  Sum_probs=174.8

Q ss_pred             CCCCcEEEEE-----eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCC
Q 005235          385 PVACYLEYKG-----STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGL  449 (707)
Q Consensus       385 p~~~~~l~sg-----s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~  449 (707)
                      +.++..+|..     +.+.+|.+||..+|+.+.++.... +..++|||||. .|++++          .++.|.+||+.+
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-~~~~a~SpDg~-~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LPNPVVADDGS-FIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SCEEEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC-CCceEEcCCCC-EEEEEeCCCccccccCCCCEEEEEECCC
Confidence            3445555553     356689999999999999887633 33799999994 565543          356788888766


Q ss_pred             CCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCC
Q 005235          450 GNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKK  529 (707)
Q Consensus       450 ~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~  529 (707)
                      +....                        .......   ...........++|+++|++++++.... ...+.+|+..++
T Consensus        88 ~~~~~------------------------~~~~~~~---~~~~~~~~~~~~~~s~dg~~~~v~~~~~-~~~~~~~~~~~~  139 (355)
T d2bbkh_          88 LLPTA------------------------DIELPDA---PRFLVGTYPWMTSLTPDGKTLLFYQFSP-APAVGVVDLEGK  139 (355)
T ss_dssp             CCEEE------------------------EEEETTC---CCCCBSCCGGGEEECTTSSEEEEEECSS-SCEEEEEETTTT
T ss_pred             CCEEE------------------------EEecCCc---ceeecCCCCceEEEecCCCeeEEecCCC-CceeeeeecCCC
Confidence            53210                        0000000   0011223446689999999988876543 458999999988


Q ss_pred             ceeeeeecc--------CCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE
Q 005235          530 LSHRIPFKL--------HGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS  599 (707)
Q Consensus       530 ~~~~~~~~~--------~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs  599 (707)
                      ... ..+..        .+....+.+++++..+++..  ++.+.+++......     .+...+.+..+.+++..++.++
T Consensus       140 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  213 (355)
T d2bbkh_         140 AFK-RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPT  213 (355)
T ss_dssp             EEE-EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEB
T ss_pred             cEe-eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEec
Confidence            776 44421        12334566777777766654  45566666544321     2333455667888888999999


Q ss_pred             CCCcEEEEECCCCCcc-eEEeecCC----------CCEEEEEEcCCCCEEEEEeCC----------CcEEEEecccccCC
Q 005235          600 REGKLCWFDMDLSSKP-YRVLKCHP----------KDITNVAFHRSYPLFASCSDD----------CTAYVFHGMVYSDL  658 (707)
Q Consensus       600 ~Dg~I~vwDl~~~~~~-~~~l~~h~----------~~I~~vafspdg~llaSgs~D----------g~I~Vwd~~~~~Dl  658 (707)
                      .++.+++|++..+... +.....+.          .....+++++++..++..+.+          ..|.+||      .
T Consensus       214 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d------~  287 (355)
T d2bbkh_         214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD------A  287 (355)
T ss_dssp             TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE------T
T ss_pred             CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEe------C
Confidence            9999999999876321 11222221          123458899999977765543          3688994      4


Q ss_pred             CCCCcccceEEeeCCCCCCCCCeeEEEEcCCCC--EEEEEeCCCcEEEEeC
Q 005235          659 NQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQP--WLFTAGADSVIRLYCH  707 (707)
Q Consensus       659 ~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~--~L~s~g~Dg~IrlWdl  707 (707)
                      .+...   +..+..+..     +.+++|+|||+  ++++++.|++|++||+
T Consensus       288 ~t~~~---~~~~~~~~~-----~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         288 KTGER---LAKFEMGHE-----IDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             TTCCE---EEEEEEEEE-----ECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             CCCcE---EEEecCCCC-----EEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence            44443   444443322     88999999998  3467778999999985

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.65  E-value=2.3e-13  Score=142.74  Aligned_cols=270  Identities=8%  Similarity=-0.051  Sum_probs=174.1

Q ss_pred             eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE----------eCCeEEEEECCCCCchhc--cccccee
Q 005235          395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS----------VGQDVLILNTGLGNEEEQ--RRVKDLL  462 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s----------~d~~V~lwd~~~~~~~~~--~~~~~v~  462 (707)
                      +.++.|.+||..+|+.+.++.... ...++|+|||. .+++++          .++.|.+||+.++.....  .......
T Consensus        44 ~~~~~v~v~D~~tg~~~~~~~~~~-~~~~a~SpDG~-~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~  121 (373)
T d2madh_          44 SAIIQQWVLDAGSGSILGHVNGGF-LPNPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF  121 (373)
T ss_pred             CCCceEEEEECCCCCEEEEEeCCC-CccEEEcCCCC-EEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCccee
Confidence            345679999999999999887633 33799999994 555554          357899999998754211  1111111


Q ss_pred             eecc-------c-------ccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEE-EEEeCCCCccEEEEEECC
Q 005235          463 HVET-------P-------TAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYL-STVMPAGESRAIFMHQLS  527 (707)
Q Consensus       463 ~~~~-------~-------~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-at~s~dg~~~~V~Iwdl~  527 (707)
                      ....       +       +.....++.+.+|+.....   ...+...+.++.|+++|+.+ ++.+.++   .+.+|+..
T Consensus       122 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~~~v~~~~dg---~~~~~~~~  195 (373)
T d2madh_         122 DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS---DDQLLSSPTCYHIHPGAPSTFYLLCAQG---GLAKTDHA  195 (373)
T ss_pred             EeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe---EEEEeccceeEEEecCCCcEEEEEcCCC---eEEEEEcC
Confidence            1111       0       1111223334444433322   23455567889999999755 6777777   99999998


Q ss_pred             CCceeeeee-c------cCCCeEEEEEeCCCCEEEEEeCCeEEEEECCCCeEEE--EEeCCC----------CCeEEEEE
Q 005235          528 KKLSHRIPF-K------LHGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIK--KLETGL----------KEVSSIAI  588 (707)
Q Consensus       528 ~~~~~~~~~-~------~~~~V~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~--~l~~~~----------~~I~sl~~  588 (707)
                      ..... ... .      .......+.+++++.+++.+.++.+.+|+........  .+....          .....+++
T Consensus       196 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (373)
T d2madh_         196 GGAAG-AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY  274 (373)
T ss_pred             Cceee-EEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEE
Confidence            87665 332 1      1223445667777777777778999999988764322  221111          12344566


Q ss_pred             cCCCCEE----------EEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeccccc
Q 005235          589 HPAGDNL----------IVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP--LFASCSDDCTAYVFHGMVYS  656 (707)
Q Consensus       589 spdg~~L----------~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~--llaSgs~Dg~I~Vwd~~~~~  656 (707)
                      +|++..+          +++..++.+.+||+.++ +.+..+. +...+.+++|+|||+  ++++++.|++|+||      
T Consensus       275 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~-~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~------  346 (373)
T d2madh_         275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIY------  346 (373)
T ss_pred             ecCCCeEEEecCCCceEEeecCCCeEEEEECCCC-cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEE------
Confidence            6666544          44556778999999887 6666664 667799999999998  55788999999999      


Q ss_pred             CCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235          657 DLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       657 Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp  688 (707)
                      |+.++..   +..+.++...    ...+++.+
T Consensus       347 D~~tg~~---~~~~~~~g~~----P~~l~~~~  371 (373)
T d2madh_         347 DAGAGDQ---DQSTVELGSG----PQVLSVMN  371 (373)
T ss_pred             ECCCCCE---EEEECCCCCC----CcEEEEec
Confidence            4555554   7788776554    66666544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.54  E-value=2.6e-12  Score=134.52  Aligned_cols=270  Identities=10%  Similarity=-0.070  Sum_probs=170.2

Q ss_pred             CCcEEEEEEccCCCccEEEEE-----eCCeEEEEECCCCCchhcccccceeeeccc-----c----------cccCCCCc
Q 005235          417 GEAIQYVAWNPLPELPVLAVS-----VGQDVLILNTGLGNEEEQRRVKDLLHVETP-----T----------APDDNMAS  476 (707)
Q Consensus       417 ~~~V~~v~~spdg~~~lla~s-----~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~-----~----------~~~~~d~~  476 (707)
                      .+++.+++++|+|. .++++.     ..+.|.+||..++...-.........+.|+     +          ..+..++.
T Consensus        20 ~~p~~~~a~spdg~-~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~   98 (373)
T d2madh_          20 DGPTNDEAPGADGR-RSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             CCCccccccCCCCC-EEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceE
Confidence            67889999999994 454432     335799999888764322111111123333     2          22345678


Q ss_pred             EEEEecCCccceE-EeccCCC-------eEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEe
Q 005235          477 IVSWLQHDKLDGI-RLRHFKM-------VSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFH  548 (707)
Q Consensus       477 i~iW~~~~~~~~~-~~~h~~~-------V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fs  548 (707)
                      +.+|+..+..... ...+...       ...+.|+++|+.++....+. ...+.+|+.......    .+...+.++.|+
T Consensus        99 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~s  173 (373)
T d2madh_          99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-GPAVGLVVQGGSSDD----QLLSSPTCYHIH  173 (373)
T ss_pred             EEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC-CCceEEeeccCCeEE----EEeccceeEEEe
Confidence            9999998776543 2222222       35678899999877666543 347888888765433    333456788999


Q ss_pred             CCCCEEEEE-e-CCeEEEEECCCCeEEEEEeCCC------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-ceEEe
Q 005235          549 PTRSIFFVS-T-KKNIRVYDLLKQRLIKKLETGL------KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSK-PYRVL  619 (707)
Q Consensus       549 pd~~~l~v~-s-dg~I~iwDl~~~~~~~~l~~~~------~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~-~~~~l  619 (707)
                      |++..++++ + |+.+.+|+...+........+.      .....+.+++++. ++..+.++.+.+|+...... ....+
T Consensus       174 ~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~  252 (373)
T d2madh_         174 PGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPI  252 (373)
T ss_pred             cCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEee
Confidence            999877654 3 8999999999887766554321      2234556666664 44556788999999876521 11222


Q ss_pred             ecCC----------CCEEEEEEcCCCCEEE----------EEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCC
Q 005235          620 KCHP----------KDITNVAFHRSYPLFA----------SCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGR  679 (707)
Q Consensus       620 ~~h~----------~~I~~vafspdg~lla----------Sgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~  679 (707)
                      ..+.          .....+++++++..++          +...++.|.+||      ..++..   +..+. +...   
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d------~~t~~~---~~~~~-~~~~---  319 (373)
T d2madh_         253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT------GLVGQT---SSQIS-LGHD---  319 (373)
T ss_pred             ccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE------CCCCcE---EEEec-CCCC---
Confidence            2222          2234456666665443          445566788884      444443   44443 3233   


Q ss_pred             CeeEEEEcCCCCE--EEEEeCCCcEEEEeC
Q 005235          680 GVMDCKFHPRQPW--LFTAGADSVIRLYCH  707 (707)
Q Consensus       680 gV~~l~fspdg~~--L~s~g~Dg~IrlWdl  707 (707)
                       +.+++|+|||+.  +++++.|++|++||+
T Consensus       320 -~~~~a~spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         320 -VDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             -eeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence             899999999984  468899999999995

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=4.2e-12  Score=129.94  Aligned_cols=209  Identities=15%  Similarity=0.157  Sum_probs=143.2

Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeC-CCCccEEEEEECCCCceeeeee----ccCCCeEEEEEeCCCCEEEEEe--CCeE
Q 005235          490 RLRHFKMVSSVEWHRRGDYLSTVMP-AGESRAIFMHQLSKKLSHRIPF----KLHGLPVSSVFHPTRSIFFVST--KKNI  562 (707)
Q Consensus       490 ~~~h~~~V~~v~~sp~g~~lat~s~-dg~~~~V~Iwdl~~~~~~~~~~----~~~~~V~~v~fspd~~~l~v~s--dg~I  562 (707)
                      ...|.+.+..|+|+|+|++|++++. ++   .|.+|++...... ..+    .....+..++|+|+|++|++++  ++.|
T Consensus        32 ~~~~~~~v~~la~spDG~~L~v~~~~d~---~i~~~~i~~~~~~-~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v  107 (333)
T d1ri6a_          32 VVDVPGQVQPMVVSPDKRYLYVGVRPEF---RVLAYRIAPDDGA-LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNV  107 (333)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTT---EEEEEEECTTTCC-EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEE
T ss_pred             EEcCCCCEeEEEEeCCCCEEEEEECCCC---eEEEEEEeCCCCc-EEEeeecccCCCceEEEEcCCCCEEeecccCCCce
Confidence            4578899999999999999976664 55   9999999866543 222    4456678899999999999987  6889


Q ss_pred             EEEECCCCeEEE--EEeCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEECCCCCcceEE-----eecCCCCEEEEEEcCC
Q 005235          563 RVYDLLKQRLIK--KLETGLKEVSSIAIHPAGDNLIVGSRE-GKLCWFDMDLSSKPYRV-----LKCHPKDITNVAFHRS  634 (707)
Q Consensus       563 ~iwDl~~~~~~~--~l~~~~~~I~sl~~spdg~~L~sGs~D-g~I~vwDl~~~~~~~~~-----l~~h~~~I~~vafspd  634 (707)
                      .+|+........  ....+...+.++.++|+++++++++.+ ..|.+|+..........     ..........++|+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~  187 (333)
T d1ri6a_         108 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  187 (333)
T ss_dssp             EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             eeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence            999987765433  334566778899999999998888754 56899998765322211     1223456789999999


Q ss_pred             CCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEeeCC--CCCCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEeC
Q 005235          635 YPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILRGH--TSSNGRGVMDCKFHPRQPWLFTA-GADSVIRLYCH  707 (707)
Q Consensus       635 g~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh--~~~~~~gV~~l~fspdg~~L~s~-g~Dg~IrlWdl  707 (707)
                      +..++... ..+...+|....    ..... .....+...  ..........+++++++++++.+ ..++.+.+|++
T Consensus       188 ~~~~~~~~~~~~~~~v~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~  259 (333)
T d1ri6a_         188 EQYAYCVNELNSSVDVWELKD----PHGNI-ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV  259 (333)
T ss_dssp             SSEEEEEETTTTEEEEEESSC----TTSCC-EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ceeEEeeccccCceEEEeecc----cccce-eeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEE
Confidence            99776554 556788885431    11111 111122111  01112337789999999987655 45678888863

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=7e-13  Score=137.58  Aligned_cols=212  Identities=12%  Similarity=0.087  Sum_probs=138.6

Q ss_pred             CCcEEEEE--eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          387 ACYLEYKG--STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       387 ~~~~l~sg--s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      ++..++.+  +.+..+.+|+..+++.+..+............+   ...++.+.|+...++.....              
T Consensus       116 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dg~~~~v~~~~~--------------  178 (355)
T d2bbkh_         116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP---DTFFMHCRDGSLAKVAFGTE--------------  178 (355)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET---TEEEEEETTSCEEEEECCSS--------------
T ss_pred             CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCC---cceEEEcCCCCEEEEEecCC--------------
Confidence            33444444  567789999999999998887643332221111   13445555555444443221              


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeee-e-c-----
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIP-F-K-----  537 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~-~-~-----  537 (707)
                                +.+..++....    ...+...+....+.+++..++.++.++   .+.+|++..+...... . .     
T Consensus       179 ----------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~  241 (355)
T d2bbkh_         179 ----------GTPEITHTEVF----HPEDEFLINHPAYSQKAGRLVWPTYTG---KIHQIDLSSGDAKFLPAVEALTEAE  241 (355)
T ss_dssp             ----------SCCEEEECCCC----SCTTSCBCSCCEEETTTTEEEEEBTTS---EEEEEECTTSSCEECCCEESSCHHH
T ss_pred             ----------CeEEEEecccc----cceecceeeeccccCCCCeEEEecCCC---eEEEEecCCCcEEEEeccCCcccce
Confidence                      11122211111    113344456677888889999998887   9999999887543111 1 1     


Q ss_pred             -----cCCCeEEEEEeCCCCEEEEEe-C----------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC--EEEEEE
Q 005235          538 -----LHGLPVSSVFHPTRSIFFVST-K----------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD--NLIVGS  599 (707)
Q Consensus       538 -----~~~~V~~v~fspd~~~l~v~s-d----------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~--~L~sGs  599 (707)
                           .......+++++++..++++. +          +.|.+||+.+++.+.++..+ ..+.+++|+|+|+  ++++++
T Consensus       242 ~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~  320 (355)
T d2bbkh_         242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALST  320 (355)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEET
T ss_pred             EeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEEC
Confidence                 112345689999999988764 2          37999999999998888754 5688999999997  456677


Q ss_pred             CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCC
Q 005235          600 REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS  634 (707)
Q Consensus       600 ~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd  634 (707)
                      .|+.|.+||+.++ +.++++..+...-..|.+.++
T Consensus       321 ~d~~i~v~D~~tg-~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         321 GDKTLYIHDAESG-EELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             TTTEEEEEETTTC-CEEEEECCCCSSCCEEECCCC
T ss_pred             CCCEEEEEECCCC-CEEEEEeCcCCCccEEEeCCC
Confidence            8999999999988 778888877665555655544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.39  E-value=4.1e-11  Score=130.34  Aligned_cols=312  Identities=13%  Similarity=0.056  Sum_probs=175.5

Q ss_pred             CcccCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEec------CCcEEEEEEccCCCccEEEEEe---------CCeEEEE
Q 005235          381 LKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEI------GEAIQYVAWNPLPELPVLAVSV---------GQDVLIL  445 (707)
Q Consensus       381 l~pfp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~------~~~V~~v~~spdg~~~lla~s~---------d~~V~lw  445 (707)
                      +++.+ ++.+++.  .|+.+.+||+.+|+....+..      ...|.++.|||||. .|+.++.         .+.+.||
T Consensus        22 ~~W~~-d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          22 LRWIS-DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CEECS-SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CEeCC-CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC-EEEEEECCcceeeeccCceEEEE
Confidence            33443 4456664  578899999999998776655      36799999999994 5555532         4678899


Q ss_pred             ECCCCCc-hhcccccceeeeccc----ccccCCCCcEEEEecCCccceEEec-------------------cCCCeEEEE
Q 005235          446 NTGLGNE-EEQRRVKDLLHVETP----TAPDDNMASIVSWLQHDKLDGIRLR-------------------HFKMVSSVE  501 (707)
Q Consensus       446 d~~~~~~-~~~~~~~~v~~~~~~----~~~~~~d~~i~iW~~~~~~~~~~~~-------------------h~~~V~~v~  501 (707)
                      |+.++.. .+..+...+....|+    .++-..+..+.+|+..++....+..                   ..+....+.
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            9998754 344455566666665    2222456678888877655432111                   223456688


Q ss_pred             EcCCCCEEEEEeCCCC---------------------------------ccEEEEEECCCCceeeeee------------
Q 005235          502 WHRRGDYLSTVMPAGE---------------------------------SRAIFMHQLSKKLSHRIPF------------  536 (707)
Q Consensus       502 ~sp~g~~lat~s~dg~---------------------------------~~~V~Iwdl~~~~~~~~~~------------  536 (707)
                      |||+|++||+...|..                                 ...+.+|++...... ...            
T Consensus       178 wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~  256 (470)
T d2bgra1         178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV-TNATSIQITAPASML  256 (470)
T ss_dssp             ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSS-SCCCEEEECCCHHHH
T ss_pred             ECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCccee-eeccccccCCccccC
Confidence            9999999999875531                                 113344444433221 100            


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEe---CC----eEEEEECCCCeEEEEE------eCCCCCe-----EEEEEcCCC--CEEE
Q 005235          537 KLHGLPVSSVFHPTRSIFFVST---KK----NIRVYDLLKQRLIKKL------ETGLKEV-----SSIAIHPAG--DNLI  596 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~s---dg----~I~iwDl~~~~~~~~l------~~~~~~I-----~sl~~spdg--~~L~  596 (707)
                      .....+..+.|.+++.+++...   ..    .+..+|..++......      .....++     ....+.+++  .+++
T Consensus       257 ~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  336 (470)
T d2bgra1         257 IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKI  336 (470)
T ss_dssp             TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEE
T ss_pred             CCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEE
Confidence            1112345788888887666543   11    2344455566543321      1111111     122344444  3456


Q ss_pred             EEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCC----cEEEEecccccCCCCCCcccce-EEe
Q 005235          597 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDC----TAYVFHGMVYSDLNQNPLIVPL-EIL  670 (707)
Q Consensus       597 sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg----~I~Vwd~~~~~Dl~~~~~~~pl-~~l  670 (707)
                      .+..+|...||.+.........+..+...|..+ +++++. ++++++.++    .-+||.+.    +.......++ ..+
T Consensus       337 ~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~----~~g~~~~~~lt~~~  411 (470)
T d2bgra1         337 ISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQ----LSDYTKVTCLSCEL  411 (470)
T ss_dssp             EECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEE----TTCTTCEEESSTTT
T ss_pred             EeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEE----CCCCCceeEecccc
Confidence            667777765555444334556666566677776 444444 334444332    33566542    2222221111 122


Q ss_pred             eCCCCCCCCCeeEEEEcCCCCEEE-EEeC--CCcEEEEe
Q 005235          671 RGHTSSNGRGVMDCKFHPRQPWLF-TAGA--DSVIRLYC  706 (707)
Q Consensus       671 ~gh~~~~~~gV~~l~fspdg~~L~-s~g~--Dg~IrlWd  706 (707)
                      .+|..    ++.+++|||||++++ +++.  .-.+.||+
T Consensus       412 ~~~~~----~~~s~~fSpdgky~~~~~s~~~~P~~~l~~  446 (470)
T d2bgra1         412 NPERC----QYYSVSFSKEAKYYQLRCSGPGLPLYTLHS  446 (470)
T ss_dssp             STTTB----CBEEEEECTTSSEEEEEECSBSSCEEEEEE
T ss_pred             cCCCC----CEEEEEECCCCCEEEEEecCCCCCeEEEEE
Confidence            34544    499999999999876 3332  33466664

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.39  E-value=1.2e-12  Score=140.68  Aligned_cols=264  Identities=14%  Similarity=0.006  Sum_probs=178.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTA  469 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~  469 (707)
                      .++||+.+|.|+||++.+++.++++..        |+|++. . ..+..+.+.                 .++...    
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpV--------fspd~~-~-g~g~~~es~-----------------~vl~~~----   61 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPV--------FNVDSA-T-GWGITNESK-----------------EILGGD----   61 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECS--------SSBCTT-T-CTTTSHHHH-----------------HHHCSS----
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEe--------EcCCCC-E-EEEECCccc-----------------eEEecc----
Confidence            466888999999999999999988842        788873 1 111111000                 000000    


Q ss_pred             ccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEE
Q 005235          470 PDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVF  547 (707)
Q Consensus       470 ~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~f  547 (707)
                            .         ....-..|.-.+....++|||++|++.....  ..|.++|+.+.+.. ..+  .....+..++|
T Consensus        62 ------~---------~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~--~rVavIDl~t~k~~-~ii~iP~g~gphgi~~  123 (441)
T d1qnia2          62 ------Q---------QYLNGDCHHPHISMTDGRYDGKYLFINDKAN--TRVARIRLDIMKTD-KITHIPNVQAIHGLRL  123 (441)
T ss_dssp             ------S---------CCSCCCBCCCEEEEETTEEEEEEEEEEETTT--TEEEEEETTTTEEE-EEEECTTCCCEEEEEE
T ss_pred             ------c---------ccccCcccCCCcceecccCCCCEEEEEcCCC--CEEEEEECCCCcEe-eEEecCCCCCccceEE
Confidence                  0         0000113444555666789999997776533  49999999998876 444  56778999999


Q ss_pred             eCCCCEEEE--EeCCeE------------------EEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-----
Q 005235          548 HPTRSIFFV--STKKNI------------------RVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG-----  602 (707)
Q Consensus       548 spd~~~l~v--~sdg~I------------------~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg-----  602 (707)
                      +|+++.+++  .++..+                  ..+|..+.+...++..+ +.+..++++|+|+++++++.+.     
T Consensus       124 spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~  202 (441)
T d1qnia2         124 QKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVD  202 (441)
T ss_dssp             CCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSS
T ss_pred             eccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEE
Confidence            999985443  334433                  55888888888777765 4578899999999999887542     


Q ss_pred             ------------------------------------cEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEE-EEEeCCC
Q 005235          603 ------------------------------------KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLF-ASCSDDC  645 (707)
Q Consensus       603 ------------------------------------~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~ll-aSgs~Dg  645 (707)
                                                          .+.+++.... ..+..+..+.. ...+.++|||+++ +++..++
T Consensus       203 id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~-~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~  280 (441)
T d1qnia2         203 LAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES-EFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSP  280 (441)
T ss_dssp             HHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC-SSEEEECCBSS-CCCEEECTTSCEEEEECTTSS
T ss_pred             EeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC-ceEEEEeCCCC-ccCceECCCCCEEEEeCCcCC
Confidence                                                3334433322 45555655444 4679999999965 5667899


Q ss_pred             cEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          646 TAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       646 ~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +|.|||+....++..+.+ .+...+.++.. .++|.+..+|.++|..+.|.+.|..|..|++
T Consensus       281 tvsv~d~~k~~~~~~~~~-~~~~~~~~~~~-~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         281 TVSVIAIDKLDDLFEDKI-ELRDTIVAEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             BEEEEEGGGHHHHTTTSS-CGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             cEEEEEeehhhhHhhccC-CcceEEEeecc-cccCcccceecCCceEEEcccccceEEEecc
Confidence            999999876544433332 23334444443 3567899999999998899999999999984

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=4.6e-14  Score=151.87  Aligned_cols=284  Identities=9%  Similarity=0.014  Sum_probs=179.3

Q ss_pred             cEE-EEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeec
Q 005235          389 YLE-YKGSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVE  465 (707)
Q Consensus       389 ~~l-~sgs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~  465 (707)
                      .++ ++...++.|.++|+.++++...+..  ...+..++|+|+|...++++.....+.+-+  .+......         
T Consensus        84 r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~--dg~~~~~~---------  152 (441)
T d1qnia2          84 KYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPN--DGTDFSLD---------  152 (441)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSC--SSSCCCGG---------
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccC--cccccccc---------
Confidence            355 4556888999999999999887775  678999999999965556666665554311  11000000         


Q ss_pred             ccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEE
Q 005235          466 TPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSS  545 (707)
Q Consensus       466 ~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v  545 (707)
                            .....+..++..+..........+.+..++|+|+|+++++.+.+..  .+...+..+.... ..+........+
T Consensus       153 ------~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse--~~~~id~~t~~~~-d~i~v~n~p~~~  223 (441)
T d1qnia2         153 ------NSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSE--RAVDLAGTMRNDR-DWVVVFNVERIA  223 (441)
T ss_dssp             ------GEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTT--CCSSHHHHTCSSB-CEEEEEEHHHHH
T ss_pred             ------cccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCC--ceEEEeccCcceE-EEEEeCCccceE
Confidence                  0001233445444444333344567889999999999998887641  2222333222222 111111122334


Q ss_pred             EEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEE-EEECCCcEEEEECCCCC-------cceE
Q 005235          546 VFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLI-VGSREGKLCWFDMDLSS-------KPYR  617 (707)
Q Consensus       546 ~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~-sGs~Dg~I~vwDl~~~~-------~~~~  617 (707)
                      ++.|+|+++.++.++.+.+++....+.+..+..+ .....++++|||++++ +|..+++|.|||+++..       .+..
T Consensus       224 ~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~  302 (441)
T d1qnia2         224 AAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD  302 (441)
T ss_dssp             HHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred             EEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcce
Confidence            5678999887777888888887777778888766 4467899999999875 56789999999986421       0111


Q ss_pred             EeecC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCccc-ceEEe-----eCCCCCCCCCeeEEEEcC
Q 005235          618 VLKCH---PKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV-PLEIL-----RGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       618 ~l~~h---~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~-pl~~l-----~gh~~~~~~gV~~l~fsp  688 (707)
                      .+.++   .-.....+|.++|..+.|.+.|..|..|++...-......... .+..+     .||...    +.+.+|+|
T Consensus       303 ~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~----~~~~t~~p  378 (441)
T d1qnia2         303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHA----SLTESRDA  378 (441)
T ss_dssp             GEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEE----TTTTSTTC
T ss_pred             EEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcc----ccccccCC
Confidence            11111   1224556899999999999999999999864210000011111 12233     577765    77788999


Q ss_pred             CCCEEEEEe
Q 005235          689 RQPWLFTAG  697 (707)
Q Consensus       689 dg~~L~s~g  697 (707)
                      ||+||++++
T Consensus       379 dGk~l~s~~  387 (441)
T d1qnia2         379 DGKWLVVLS  387 (441)
T ss_dssp             CCCEEEEEE
T ss_pred             CCcEEEecC
Confidence            999999994

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.22  E-value=1.1e-10  Score=122.63  Aligned_cols=263  Identities=7%  Similarity=-0.104  Sum_probs=149.6

Q ss_pred             EEeCCCc--EEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEe----------CCeEEEEECCCCCchhcccccc
Q 005235          393 KGSTDGT--VRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSV----------GQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       393 sgs~Dgt--VrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~----------d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      +...+|+  |.+||..+++.+..+..... ..++|+|||. .|++++.          ++.|.+||+.++....      
T Consensus        39 ~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-~~~a~spDg~-~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~------  110 (368)
T d1mdah_          39 PAYFAGTTENWVSCAGCGVTLGHSLGAFL-SLAVAGHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIA------  110 (368)
T ss_dssp             CTTTCSSEEEEEEETTTTEEEEEEEECTT-CEEEECTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE------
T ss_pred             eccCCCcceEEEEeCCCCcEEEEEeCCCC-CcceECCCCC-EEEEEcccCccccccccCCeEEEEECCCCcEee------
Confidence            3445555  66679999999988877332 3689999993 5555542          3456666655542210      


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccC
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLH  539 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~  539 (707)
                                        ........   ..........++|+|+|++|+++..+.  +.+.+||+.+.+.. ..+ .+.
T Consensus       111 ------------------~i~~p~~~---~~~~g~~p~~~a~SpDGk~l~va~~~~--~~v~~~d~~~~~~~-~~~~~~~  166 (368)
T d1mdah_         111 ------------------DIELPDAP---RFSVGPRVHIIGNCASSACLLFFLFGS--SAAAGLSVPGASDD-QLTKSAS  166 (368)
T ss_dssp             ------------------EEEETTSC---SCCBSCCTTSEEECTTSSCEEEEECSS--SCEEEEEETTTEEE-EEEECSS
T ss_pred             ------------------eecCCccc---eecccCCccceEECCCCCEEEEEeCCC--CeEEEEECCCCcEe-EEeeccC
Confidence                              00000000   001122334689999999998876432  39999999998776 555 222


Q ss_pred             CCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEE------EeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          540 GLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKK------LETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~------l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                      ...   .+......+++.+ ||.+.++++........      +..+...+..+.+++++..+.+  ..+.+.++++...
T Consensus       167 ~~~---~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~  241 (368)
T d1mdah_         167 CFH---IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAA  241 (368)
T ss_dssp             CCC---CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSS
T ss_pred             cce---EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCC
Confidence            111   1111122333333 77777777765422211      1223334556777877765554  3566777777654


Q ss_pred             CcceEEe--ecC----------CCCEEEEEEcCCCCEEEEEeCC---------CcEEEEecccccCCCCCCcccceEEee
Q 005235          613 SKPYRVL--KCH----------PKDITNVAFHRSYPLFASCSDD---------CTAYVFHGMVYSDLNQNPLIVPLEILR  671 (707)
Q Consensus       613 ~~~~~~l--~~h----------~~~I~~vafspdg~llaSgs~D---------g~I~Vwd~~~~~Dl~~~~~~~pl~~l~  671 (707)
                      . .....  ..+          ......+++++++..++....+         ..|.+||      ..++..   +..+.
T Consensus       242 ~-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D------~~t~~~---~~~~~  311 (368)
T d1mdah_         242 G-ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT------ASVGQT---SGPIS  311 (368)
T ss_dssp             C-CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE------SSSCCE---EECCE
T ss_pred             c-eEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE------CCCCcE---eEEec
Confidence            2 22111  111          1122357889998866554322         2488884      444443   34443


Q ss_pred             CCCCCCCCCeeEEEEcCCCC-E-EEEEeCCCcEEEEeC
Q 005235          672 GHTSSNGRGVMDCKFHPRQP-W-LFTAGADSVIRLYCH  707 (707)
Q Consensus       672 gh~~~~~~gV~~l~fspdg~-~-L~s~g~Dg~IrlWdl  707 (707)
                      ... .    +.+++|+|||+ + +++++.|++|++||.
T Consensus       312 ~~~-~----~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         312 NGH-D----SDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             EEE-E----ECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             CCC-c----eeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            322 2    88999999997 3 456678899999984

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.20  E-value=1e-10  Score=122.77  Aligned_cols=221  Identities=8%  Similarity=-0.011  Sum_probs=145.8

Q ss_pred             EeCCCcEEEEeCCCCeEEEEEec--------CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccc---e
Q 005235          394 GSTDGTVRIWEVESGRCLRVLEI--------GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKD---L  461 (707)
Q Consensus       394 gs~DgtVrIWd~~tg~~l~~l~~--------~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~---v  461 (707)
                      |+.|++|++||..+++++..+..        ......++|+|||. .++++. .++.+.+||+.++..........   +
T Consensus        92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk-~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  170 (368)
T d1mdah_          92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI  170 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC
T ss_pred             cccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC-EEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE
Confidence            35688899999999999988864        22345799999994 565554 57899999998875421111000   0


Q ss_pred             eeecc-cccccCCCCcEEEEecCCccceE-------EeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee
Q 005235          462 LHVET-PTAPDDNMASIVSWLQHDKLDGI-------RLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       462 ~~~~~-~~~~~~~d~~i~iW~~~~~~~~~-------~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~  533 (707)
                      ....- .++..+.++.+..|.........       ...+...+..+.+.+++..+.+.+.     .+.++++.......
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~v~~~~~~~~~~~~  245 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVAS-----SILQGDIPAAGATM  245 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSS-----CCEEEECCSSCCEE
T ss_pred             ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCC-----CEEEEeecCCceEE
Confidence            00000 14556678888888776433221       2234455567788888776655432     55666665543321


Q ss_pred             ee-e-----------ccCCCeEEEEEeCCCCEEEEEe-C---------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCC
Q 005235          534 IP-F-----------KLHGLPVSSVFHPTRSIFFVST-K---------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA  591 (707)
Q Consensus       534 ~~-~-----------~~~~~V~~v~fspd~~~l~v~s-d---------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spd  591 (707)
                      .. .           ...+....++++|++..+++.. +         ..|.+||+.+++.+.++..+ ..+.+++|+||
T Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spD  324 (368)
T d1mdah_         246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQD  324 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCS
T ss_pred             EeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEEEECCC
Confidence            00 0           0112345688999999887764 1         35999999999988887654 56889999999


Q ss_pred             CCE--EEEEECCCcEEEEECCCCCcceEEeecC
Q 005235          592 GDN--LIVGSREGKLCWFDMDLSSKPYRVLKCH  622 (707)
Q Consensus       592 g~~--L~sGs~Dg~I~vwDl~~~~~~~~~l~~h  622 (707)
                      |+.  ++++..++.|.+||..++ +.+..+...
T Consensus       325 G~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~~g  356 (368)
T d1mdah_         325 GASDNYANSAGTEVLDIYDAASD-QDQSSVELD  356 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEESSSC-EEEEECCCC
T ss_pred             CCEEEEEEeCCCCeEEEEECCCC-CEEEEEECC
Confidence            973  456677899999999987 777777644

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=2.8e-08  Score=98.42  Aligned_cols=238  Identities=9%  Similarity=0.053  Sum_probs=150.0

Q ss_pred             cEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCC---eEEEEECCCCCchhcccccceeeecccccccCCCC
Q 005235          399 TVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQ---DVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMA  475 (707)
Q Consensus       399 tVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~---~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~  475 (707)
                      .|.|-|...+...........+.+.+|||||+ .|+-+....   .+.+.+.                            
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk-~IAf~~~~~~~~~~~~~~~----------------------------   70 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTL----------------------------   70 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEET----------------------------
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCC-EEEEEEeeccCcceeeeec----------------------------
Confidence            57777876555555566688899999999994 454443322   2333332                            


Q ss_pred             cEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEE
Q 005235          476 SIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFF  555 (707)
Q Consensus       476 ~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~  555 (707)
                             .+.....+..+........|+|+|..++..........+..+........ .............+++++..++
T Consensus        71 -------~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  142 (269)
T d2hqsa1          71 -------ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLA  142 (269)
T ss_dssp             -------TTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEE
T ss_pred             -------ccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccce
Confidence                   22333345567788889999999999998876554445555555444332 2235555566677888887766


Q ss_pred             EEe--C--CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-cEEEEECCCCCcceEEeecCCCCEEEEE
Q 005235          556 VST--K--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG-KLCWFDMDLSSKPYRVLKCHPKDITNVA  630 (707)
Q Consensus       556 v~s--d--g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg-~I~vwDl~~~~~~~~~l~~h~~~I~~va  630 (707)
                      ..+  +  ..|.++++..+... .+...........|+|+|..++..+.++ ...+|.++....... +..+........
T Consensus       143 ~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~p~  220 (269)
T d2hqsa1         143 FTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPS  220 (269)
T ss_dssp             EEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEE
T ss_pred             ecccccCCceEeeeecccccce-eeecccccccccccccccceeEEEeecCCceeeeEeecccccce-EeecCccccceE
Confidence            654  3  35777777766433 3344556677889999999988876654 344444433323333 444566778899


Q ss_pred             EcCCCCEEEEEeCC---CcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCC
Q 005235          631 FHRSYPLFASCSDD---CTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPR  689 (707)
Q Consensus       631 fspdg~llaSgs~D---g~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspd  689 (707)
                      |||||+.||..+..   ..|.+++      +....    ...|......    +...+|||-
T Consensus       221 ~SPDG~~i~f~s~~~~~~~l~~~~------~dg~~----~~~lt~~~g~----~~~p~WSP~  268 (269)
T d2hqsa1         221 LAPNGTMVIYSSSQGMGSVLNLVS------TDGRF----KARLPATDGQ----VKFPAWSPY  268 (269)
T ss_dssp             ECTTSSEEEEEEEETTEEEEEEEE------TTSCC----EEECCCSSSE----EEEEEECCC
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEE------CCCCC----EEEEeCCCCc----EEeEEeCCC
Confidence            99999987755533   3566664      33332    3445554444    888999984

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.15  E-value=1.9e-08  Score=105.69  Aligned_cols=162  Identities=14%  Similarity=0.156  Sum_probs=100.6

Q ss_pred             CCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC-CeE--EEEEe--CCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECC
Q 005235          539 HGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK-QRL--IKKLE--TGLKEVSSIAIHPAGDNLIVGS-REGKLCWFDMD  610 (707)
Q Consensus       539 ~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~-~~~--~~~l~--~~~~~I~sl~~spdg~~L~sGs-~Dg~I~vwDl~  610 (707)
                      ...+.+++|+|+|++++++.  ...|.+|+... +.+  ...+.  ........++|+|+|+++.+.. .+++|.+|+++
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            44678999999999999987  47899998654 322  22222  2235689999999999886554 57889999997


Q ss_pred             CCCcc-eEEee-----------------cCCCCEEEEEEcCCCCEEEEEeC-C-----CcEEEEecccccCCCCCCcccc
Q 005235          611 LSSKP-YRVLK-----------------CHPKDITNVAFHRSYPLFASCSD-D-----CTAYVFHGMVYSDLNQNPLIVP  666 (707)
Q Consensus       611 ~~~~~-~~~l~-----------------~h~~~I~~vafspdg~llaSgs~-D-----g~I~Vwd~~~~~Dl~~~~~~~p  666 (707)
                      ..... .....                 .+......+.++|+|++|+++.. +     +.|..|...      .......
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~------~~g~~~~  297 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR------DCGSIEK  297 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC------TTSCEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEec------CCCceee
Confidence            65321 11111                 11123567899999998776642 2     236666432      1111100


Q ss_pred             eEEeeCCCCCCCCCeeEEEEcC-CCCEEEEEe-CCCcEEEEeC
Q 005235          667 LEILRGHTSSNGRGVMDCKFHP-RQPWLFTAG-ADSVIRLYCH  707 (707)
Q Consensus       667 l~~l~gh~~~~~~gV~~l~fsp-dg~~L~s~g-~Dg~IrlWdl  707 (707)
                      ...+ .+....+....+++++| +|+||+.++ .++.|.+|++
T Consensus       298 ~~~~-~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         298 QLFL-SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEE-EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             EeEe-eEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            1111 11111112267799998 899887764 6789999963

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=5.3e-08  Score=96.31  Aligned_cols=214  Identities=14%  Similarity=0.135  Sum_probs=138.3

Q ss_pred             EEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEE
Q 005235          477 IVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFV  556 (707)
Q Consensus       477 i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v  556 (707)
                      |.+-+..+.....+..+...+.+.+|||||++||..........+.+.+....... ......+......|+|++..++.
T Consensus        21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeE
Confidence            34444555555556667788899999999999999887766667888888777654 33477788889999999999887


Q ss_pred             Ee--CC--eEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCc--EEEEECCCCCcceEEeecCCCCEEEE
Q 005235          557 ST--KK--NIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS-REGK--LCWFDMDLSSKPYRVLKCHPKDITNV  629 (707)
Q Consensus       557 ~s--dg--~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs-~Dg~--I~vwDl~~~~~~~~~l~~h~~~I~~v  629 (707)
                      ..  .+  .+..+.......... ...........+++++..++..+ .+|.  |.+.++...  ....+..+.......
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~--~~~~~~~~~~~~~~~  176 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--APQRITWEGSQNQDA  176 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CCEECCCSSSEEEEE
T ss_pred             eeecCCccceeecccccccceee-eeccccccccccccccccceecccccCCceEeeeecccc--cceeeeccccccccc
Confidence            65  33  333444443433332 33334456667888887665554 4454  555565543  455566667778889


Q ss_pred             EEcCCCCEEEEEeC-CCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCC---CcEEEE
Q 005235          630 AFHRSYPLFASCSD-DCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGAD---SVIRLY  705 (707)
Q Consensus       630 afspdg~llaSgs~-Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~D---g~IrlW  705 (707)
                      .|+|++..++..+. .+...+|..    +.....    ...+ .+...    .....|+|||++|+..+..   +.|.+|
T Consensus       177 ~~spdg~~~~~~~~~~~~~~i~~~----~~~~~~----~~~~-~~~~~----~~~p~~SPDG~~i~f~s~~~~~~~l~~~  243 (269)
T d2hqsa1         177 DVSSDGKFMVMVSSNGGQQHIAKQ----DLATGG----VQVL-SSTFL----DETPSLAPNGTMVIYSSSQGMGSVLNLV  243 (269)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEE----ETTTCC----EEEC-CCSSS----CEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             ccccccceeEEEeecCCceeeeEe----eccccc----ceEe-ecCcc----ccceEECCCCCEEEEEEcCCCCcEEEEE
Confidence            99999998776654 455555533    222221    2222 23333    7788999999998655432   345666


Q ss_pred             eC
Q 005235          706 CH  707 (707)
Q Consensus       706 dl  707 (707)
                      ++
T Consensus       244 ~~  245 (269)
T d2hqsa1         244 ST  245 (269)
T ss_dssp             ET
T ss_pred             EC
Confidence            53

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.99  E-value=3.5e-08  Score=98.27  Aligned_cols=192  Identities=7%  Similarity=0.086  Sum_probs=130.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~  574 (707)
                      ....|+++++|..+++....+   .+.+++....... ..+.....+.++++.+++.++++-. ...+..++........
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~---~i~~~~~~~~~~~-~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~  133 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNR---VVTLAAGSNNQTV-LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV  133 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTE---EEEECTTCSCCEE-CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE
T ss_pred             CceEEEEcCCCCEEEeeeeec---eeeeeeeccceee-eeeeeeeecccccccccceeEeeccccccccccccccceeee
Confidence            457889999998877655443   6666655544433 3334456788999999998776654 5778888776543322


Q ss_pred             EEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q 005235          575 KLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMV  654 (707)
Q Consensus       575 ~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~  654 (707)
                      ..........+++++|+|+.+++...++.|..+|.+.. .........-.....|++.++|.++++....+.|..++.  
T Consensus       134 ~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~-~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~--  210 (260)
T d1rwia_         134 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA--  210 (260)
T ss_dssp             CCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT--
T ss_pred             eeecccCCcceeeecCCCCEeeeccccccccccccccc-eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeC--
Confidence            22233355688999999998888888899999998754 222222234456789999999999999888888888842  


Q ss_pred             ccCCCCCCcccceEEee-CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          655 YSDLNQNPLIVPLEILR-GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYC  706 (707)
Q Consensus       655 ~~Dl~~~~~~~pl~~l~-gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWd  706 (707)
                          ....    ...+. ..-..    ..+|+++++|.++++-..+++|+..+
T Consensus       211 ----~~~~----~~~~~~~~~~~----P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         211 ----GSTT----STVLPFTGLNT----PLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             ----TCSC----CEECCCCSCCC----EEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ----CCCe----EEEEccCCCCC----eEEEEEeCCCCEEEEECCCCEEEEEe
Confidence                2211    11221 11122    78999999999888877778787654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.97  E-value=1.4e-07  Score=95.89  Aligned_cols=237  Identities=11%  Similarity=0.078  Sum_probs=150.5

Q ss_pred             CeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCcc
Q 005235          408 GRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKL  486 (707)
Q Consensus       408 g~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~  486 (707)
                      .+.+..+.....+..++++|||  .|+++. .+++|..|++...                          .         
T Consensus        18 ~~v~~~~p~~~~~e~iAv~pdG--~l~vt~~~~~~I~~i~p~g~--------------------------~---------   60 (302)
T d2p4oa1          18 AKIITSFPVNTFLENLASAPDG--TIFVTNHEVGEIVSITPDGN--------------------------Q---------   60 (302)
T ss_dssp             EEEEEEECTTCCEEEEEECTTS--CEEEEETTTTEEEEECTTCC--------------------------E---------
T ss_pred             ccEEEECCCCCCcCCEEECCCC--CEEEEeCCCCEEEEEeCCCC--------------------------E---------
Confidence            3444455545568899999999  355544 5677777764322                          1         


Q ss_pred             ceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEEEEe-CCeE
Q 005235          487 DGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFFVST-KKNI  562 (707)
Q Consensus       487 ~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~v~s-dg~I  562 (707)
                       ..+......+.+++|+++|+++++...++   .+.+++..........+   .....+..+++.+++.++++.+ ++.+
T Consensus        61 -~~~~~~~~~~~gla~~~dG~l~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i  136 (302)
T d2p4oa1          61 -QIHATVEGKVSGLAFTSNGDLVATGWNAD---SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAI  136 (302)
T ss_dssp             -EEEEECSSEEEEEEECTTSCEEEEEECTT---SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEE
T ss_pred             -EEEEcCCCCcceEEEcCCCCeEEEecCCc---eEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccc
Confidence             12234556789999999999888887766   66666654433221222   4456788999999998777766 7899


Q ss_pred             EEEECCCCeEEEEEeC----------CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc--eEEeecCCCCEEEEE
Q 005235          563 RVYDLLKQRLIKKLET----------GLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKP--YRVLKCHPKDITNVA  630 (707)
Q Consensus       563 ~iwDl~~~~~~~~l~~----------~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~--~~~l~~h~~~I~~va  630 (707)
                      ..+|...+.....+..          .......++++. +.++++.+..+.|..+++......  ...+. .......++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia  214 (302)
T d2p4oa1         137 WLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFA  214 (302)
T ss_dssp             EEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEE
T ss_pred             eeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEecccccccccccccccc-CCCCCcceE
Confidence            9999887754433321          112356666653 335556677888998888654221  11221 234456799


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEE---cCCCCEEEEEeCC
Q 005235          631 FHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKF---HPRQPWLFTAGAD  699 (707)
Q Consensus       631 fspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~f---spdg~~L~s~g~D  699 (707)
                      |.++|.++++...++.|..++-      .....  .+.......    .+.++++|   ++|++.|+.++..
T Consensus       215 ~d~dG~l~va~~~~~~V~~i~p------~G~~~--~~~~~~~~~----~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         215 FDVEGNLYGATHIYNSVVRIAP------DRSTT--IIAQAEQGV----IGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EBTTCCEEEECBTTCCEEEECT------TCCEE--EEECGGGTC----TTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ECCCCCEEEEEcCCCcEEEECC------CCCEE--EEEecCCCC----CCceEEEEcCCCCCCCEEEEECCC
Confidence            9999999888888999999842      21110  112222222    23899999   7788888766544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.85  E-value=2.3e-07  Score=97.12  Aligned_cols=243  Identities=12%  Similarity=0.054  Sum_probs=143.7

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCC-CeEEEEE--ecCCcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhcccc
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVES-GRCLRVL--EIGEAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQRRV  458 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~t-g~~l~~l--~~~~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~~  458 (707)
                      |..++.++|+.+. +.+..|.+.. +..+...  ........+++++++...+++++.  .+.|..+.+...        
T Consensus        47 ~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~--------  117 (365)
T d1jofa_          47 FDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF--------  117 (365)
T ss_dssp             ECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS--------
T ss_pred             EcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC--------
Confidence            3444567777654 4577776653 3333222  225556788899998422333332  345555543221        


Q ss_pred             cceeeecccccccCCCCcEEEEecC--Cccce----EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCcee
Q 005235          459 KDLLHVETPTAPDDNMASIVSWLQH--DKLDG----IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSH  532 (707)
Q Consensus       459 ~~v~~~~~~~~~~~~d~~i~iW~~~--~~~~~----~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~  532 (707)
                                     .+...+....  .....    ........+.++.|+|+|++++++...  ...|.+|++......
T Consensus       118 ---------------~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g--~d~v~~~~~~~~g~~  180 (365)
T d1jofa_         118 ---------------AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT--ANKLWTHRKLASGEV  180 (365)
T ss_dssp             ---------------CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCE
T ss_pred             ---------------CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC--CCEEEEEEccCCCce
Confidence                           1111111111  10000    112233457899999999999988753  247888876544322


Q ss_pred             e--eee---ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCe--EEEE---EeC--------------CCCCeEEE
Q 005235          533 R--IPF---KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQR--LIKK---LET--------------GLKEVSSI  586 (707)
Q Consensus       533 ~--~~~---~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~--~~~~---l~~--------------~~~~I~sl  586 (707)
                      .  ..+   ........++|+|+++++++..  +++|.+|++..+.  .+..   +..              +......+
T Consensus       181 ~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  260 (365)
T d1jofa_         181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             eeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccce
Confidence            1  112   3456789999999999998887  7999999987653  2222   210              11235678


Q ss_pred             EEcCCCCEEEEEEC------CCcEEEEECCCCCcceEEe-----ecCCCCEEEEEEcC-CCCEEEEE-eCCCcEEEEec
Q 005235          587 AIHPAGDNLIVGSR------EGKLCWFDMDLSSKPYRVL-----KCHPKDITNVAFHR-SYPLFASC-SDDCTAYVFHG  652 (707)
Q Consensus       587 ~~spdg~~L~sGs~------Dg~I~vwDl~~~~~~~~~l-----~~h~~~I~~vafsp-dg~llaSg-s~Dg~I~Vwd~  652 (707)
                      .++|+|++|+++..      .+.|..|++..........     ......-++++|+| +|++|+++ ..+++|.||+.
T Consensus       261 ~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             EECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            99999999988643      2238888876543322211     12234567799998 78976655 57789999964

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.82  E-value=7e-09  Score=112.20  Aligned_cols=153  Identities=15%  Similarity=0.124  Sum_probs=107.9

Q ss_pred             EEEEEeCCCCEEEEEeCCeEEEEECCCCeEEEEEeCC-----CCCeEEEEEcCCCCEEEEEEC---------CCcEEEEE
Q 005235          543 VSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETG-----LKEVSSIAIHPAGDNLIVGSR---------EGKLCWFD  608 (707)
Q Consensus       543 ~~v~fspd~~~l~v~sdg~I~iwDl~~~~~~~~l~~~-----~~~I~sl~~spdg~~L~sGs~---------Dg~I~vwD  608 (707)
                      ..+.|.+++.++. ..++.|.+||+.+++....+..+     ...|.++.|||||++|++++.         ++.+.+||
T Consensus        20 ~~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          20 YSLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             cCCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4578999887654 34788999999999876655443     367999999999999998853         56789999


Q ss_pred             CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccce------EEeeCCCCC-----C
Q 005235          609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPL------EILRGHTSS-----N  677 (707)
Q Consensus       609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl------~~l~gh~~~-----~  677 (707)
                      +.++ . ...+..|...+..+.|||||+.||... ++.+++|+.      ..+......      ..+.+....     .
T Consensus        99 ~~~~-~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~------~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1          99 LNKR-Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIE------PNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             TTTT-E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESS------TTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             CCCC-c-ccccccCCccccccccccCcceeeEee-cccceEEEC------CCCceeeeeeccCCCcccccccceeeeeee
Confidence            9876 3 556888999999999999999999864 678999953      333221000      001111000     0


Q ss_pred             CCCeeEEEEcCCCCEEEEEeCCCc-EEEE
Q 005235          678 GRGVMDCKFHPRQPWLFTAGADSV-IRLY  705 (707)
Q Consensus       678 ~~gV~~l~fspdg~~L~s~g~Dg~-IrlW  705 (707)
                      ......+.|||||++|+++..|.+ |..|
T Consensus       170 ~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         170 FSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             cCCccccEECCCCCccceeEecCCcCceE
Confidence            011466889999999999876644 5444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.82  E-value=1.1e-06  Score=89.87  Aligned_cols=192  Identities=13%  Similarity=0.140  Sum_probs=124.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCC----CeEEEEEeCCCCEEEEEeC-----------
Q 005235          496 MVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHG----LPVSSVFHPTRSIFFVSTK-----------  559 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~----~V~~v~fspd~~~l~v~sd-----------  559 (707)
                      ....++|.++|+.++++....   .|...+....... ... ...+    .++.++|.++|.+.++...           
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~---~i~~~~~~g~~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~  147 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRL---GLLVVQTDGTFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTT---EEEEEETTSCEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             cceeEEEeCCCCEEEEEECCC---eEEEEeCCCcEEE-EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccce
Confidence            467899999999888777654   7888888766543 211 2221    3578999999988776421           


Q ss_pred             -----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCC-----EEEEEECCCcEEEEECCCCCcce-----EEeec-CC
Q 005235          560 -----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGD-----NLIVGSREGKLCWFDMDLSSKPY-----RVLKC-HP  623 (707)
Q Consensus       560 -----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~-----~L~sGs~Dg~I~vwDl~~~~~~~-----~~l~~-h~  623 (707)
                           +.|..++.. ++..... .+....+.++|+|+++     ++++-+..+.|..||+.....+.     ..+.+ +.
T Consensus       148 ~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  225 (314)
T d1pjxa_         148 MQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             TSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             eccCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc
Confidence                 244444443 3333322 2234457899999875     44555678889999986543221     12211 12


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEE-EEEeCCCcE
Q 005235          624 KDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWL-FTAGADSVI  702 (707)
Q Consensus       624 ~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L-~s~g~Dg~I  702 (707)
                      .....+++..+|+++++....+.|.+|+      ......   +..+......    .++|+|.|+++.| +|.+..|+|
T Consensus       226 ~~pdGiavD~~GnlyVa~~~~g~I~~~d------p~~g~~---~~~i~~p~~~----~t~~afg~d~~~lyVt~~~~g~i  292 (314)
T d1pjxa_         226 GGADGMDFDEDNNLLVANWGSSHIEVFG------PDGGQP---KMRIRCPFEK----PSNLHFKPQTKTIFVTEHENNAV  292 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEEC------TTCBSC---SEEEECSSSC----EEEEEECTTSSEEEEEETTTTEE
T ss_pred             ccceeeEEecCCcEEEEEcCCCEEEEEe------CCCCEE---EEEEECCCCC----EEEEEEeCCCCEEEEEECCCCcE
Confidence            3456899999999988888889999994      333322   3444444443    8999999999855 555667877


Q ss_pred             EEEe
Q 005235          703 RLYC  706 (707)
Q Consensus       703 rlWd  706 (707)
                      ...+
T Consensus       293 ~~~~  296 (314)
T d1pjxa_         293 WKFE  296 (314)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7665

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.75  E-value=6.8e-07  Score=90.67  Aligned_cols=222  Identities=9%  Similarity=0.019  Sum_probs=141.0

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceee
Q 005235          384 YPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLH  463 (707)
Q Consensus       384 fp~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~  463 (707)
                      +..++.++++...+++|..|+.. |...........+.+++|+++|. .+++...++.+.+|+.....            
T Consensus        35 v~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~------------  100 (302)
T d2p4oa1          35 SAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSD------------  100 (302)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTT------------
T ss_pred             ECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccc------------
Confidence            34456788898889999888854 55554555588999999999993 44444566677776643321            


Q ss_pred             ecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-------
Q 005235          464 VETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-------  536 (707)
Q Consensus       464 ~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-------  536 (707)
                                 +.+..+        ...........+++.++|+++++.+..+   .+..++...+.......       
T Consensus       101 -----------~~~~~~--------~~~~~~~~~n~i~~~~~g~~~v~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~  158 (302)
T d2p4oa1         101 -----------GTVETL--------LTLPDAIFLNGITPLSDTQYLTADSYRG---AIWLIDVVQPSGSIWLEHPMLARS  158 (302)
T ss_dssp             -----------SCEEEE--------EECTTCSCEEEEEESSSSEEEEEETTTT---EEEEEETTTTEEEEEEECGGGSCS
T ss_pred             -----------cceeec--------cccCCccccceeEEccCCCEEeeccccc---cceeeeccCCcceeEecCCcccee
Confidence                       111111        1123445678899999999888877766   88888877664331111       


Q ss_pred             ---ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCCeEE---EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          537 ---KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQRLI---KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       537 ---~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~~~~---~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                         .....+..+.+.  +..++++.  .+.|..+++......   ..+. .......|+++++|+++++...+++|..++
T Consensus       159 ~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         159 NSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             STTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             eccCccccccccccc--CCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence               112234555555  44555554  788999987654211   1122 223456799999999888888899999998


Q ss_pred             CCCCCcceEEeecCCCCEEEEEE---cCCCCEEEEEeCC
Q 005235          609 MDLSSKPYRVLKCHPKDITNVAF---HRSYPLFASCSDD  644 (707)
Q Consensus       609 l~~~~~~~~~l~~h~~~I~~vaf---spdg~llaSgs~D  644 (707)
                      .+.....+......-...++++|   ++|++.|+.++..
T Consensus       236 p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         236 PDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            76321112222233456899999   6777877665544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.72  E-value=5.6e-06  Score=84.42  Aligned_cols=223  Identities=11%  Similarity=0.160  Sum_probs=142.2

Q ss_pred             CCcEEEEeCCCCeEEEEEec-----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccccc
Q 005235          397 DGTVRIWEVESGRCLRVLEI-----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPD  471 (707)
Q Consensus       397 DgtVrIWd~~tg~~l~~l~~-----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~  471 (707)
                      +|+|..||..++........     .+....|+|.+++. .++++...+.|..+++......+....             
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~-~l~vad~~~~i~~~~~~g~~~~~~~~~-------------  110 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRLGLLVVQTDGTFEEIAKKD-------------  110 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEETTTEEEEEETTSCEEECCSBC-------------
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC-EEEEEECCCeEEEEeCCCcEEEEEecc-------------
Confidence            46788899888875543322     34467899999984 566666667788888654321110000             


Q ss_pred             CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC------------CccEEEEEECCCCceeeeeeccC
Q 005235          472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG------------ESRAIFMHQLSKKLSHRIPFKLH  539 (707)
Q Consensus       472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg------------~~~~V~Iwdl~~~~~~~~~~~~~  539 (707)
                       .+         +       ..-.....+++.++|.+.++-....            ..+.|..++... ... .....-
T Consensus       111 -~~---------g-------~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~-~~~~~~  171 (314)
T d1pjxa_         111 -SE---------G-------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI-QVDTAF  171 (314)
T ss_dssp             -TT---------S-------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE-EEEEEE
T ss_pred             -cc---------c-------cccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee-EeeCCc
Confidence             00         0       0012357788999998877643211            122444444432 221 222333


Q ss_pred             CCeEEEEEeCCCC----EEEEEe--CCeEEEEECCCC-eEE-----EEEeC-CCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 005235          540 GLPVSSVFHPTRS----IFFVST--KKNIRVYDLLKQ-RLI-----KKLET-GLKEVSSIAIHPAGDNLIVGSREGKLCW  606 (707)
Q Consensus       540 ~~V~~v~fspd~~----~l~v~s--dg~I~iwDl~~~-~~~-----~~l~~-~~~~I~sl~~spdg~~L~sGs~Dg~I~v  606 (707)
                      ...+.++|+|++.    .|+++.  .+.|..||+... .+.     ..+.. .......|++..+|++.++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            4457899998765    566654  689999987643 221     11211 1223678999999998888888899999


Q ss_pred             EECCCCCcceEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecc
Q 005235          607 FDMDLSSKPYRVLKCHPKDITNVAFHRSYP-LFASCSDDCTAYVFHGM  653 (707)
Q Consensus       607 wDl~~~~~~~~~l~~h~~~I~~vafspdg~-llaSgs~Dg~I~Vwd~~  653 (707)
                      ||.+.+ .....+.......++++|.|+++ ++++.+.+|.|..+++.
T Consensus       252 ~dp~~g-~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         252 FGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EeCCCC-EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            998765 56666766667889999999987 66777788988888653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.69  E-value=1.2e-06  Score=86.79  Aligned_cols=151  Identities=10%  Similarity=0.080  Sum_probs=107.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEE
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLI  573 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~  573 (707)
                      ..+.+|++.++|+++++-..+.   .+..++..................++++.+++.++++.. ++.|..+|.......
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~  174 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNN---RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  174 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGT---EEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             eecccccccccceeEeeccccc---cccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee
Confidence            4578899999999877665544   777777665543312223345668999999998766655 788999998765444


Q ss_pred             EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005235          574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-CHPKDITNVAFHRSYPLFASCSDDCTAYVF  650 (707)
Q Consensus       574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-~h~~~I~~vafspdg~llaSgs~Dg~I~Vw  650 (707)
                      ............|+++++|.++++....++|..++....  ....+. ..-....+|+++++|.++++-..++.|+.+
T Consensus       175 ~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~--~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         175 VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST--TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS--CCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC--eEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            333344566889999999998888888888998887644  223332 222456899999999988887777877766

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.4e-06  Score=92.23  Aligned_cols=277  Identities=11%  Similarity=0.051  Sum_probs=148.1

Q ss_pred             eCCCcEEEEeCCCCeEEEEEec---CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeeccccccc
Q 005235          395 STDGTVRIWEVESGRCLRVLEI---GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPD  471 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~---~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~  471 (707)
                      +..+.+.|+|+.++........   ...+....|||||.  .+|-..++.|.+.+...+....      ++       ..
T Consensus        88 s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~--~iafv~~~nl~~~~~~~~~~~~------lt-------~~  152 (465)
T d1xfda1          88 SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFENNIYYCAHVGKQAIR------VV-------ST  152 (465)
T ss_dssp             CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT--CEEEEETTEEEEESSSSSCCEE------EE-------CC
T ss_pred             eccccEEEEEccCCceeeccCccCCccccceeeeccCCc--eEEEEecceEEEEecCCCceEE------Ee-------cc
Confidence            4567899999998875432222   44566789999994  4555668888888765543210      00       00


Q ss_pred             CCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC-------------------------------CccE
Q 005235          472 DNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG-------------------------------ESRA  520 (707)
Q Consensus       472 ~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg-------------------------------~~~~  520 (707)
                      +..+.+ .+-...- . ......+.-..+-|||+|++||....|.                               ....
T Consensus       153 g~~~~i-~nG~~d~-v-yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~  229 (465)
T d1xfda1         153 GKEGVI-YNGLSDW-L-YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS  229 (465)
T ss_dssp             CBTTTE-EEEECCH-H-HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred             cCccee-eccccch-h-hhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCcee
Confidence            000100 0000000 0 0000112225677899999888865332                               1125


Q ss_pred             EEEEECCCCceeeeee------ccCCCeEEEEEeCCCCEEEEEeC-----CeEEEEECCCCeEEEEEeC-CCCCe----E
Q 005235          521 IFMHQLSKKLSHRIPF------KLHGLPVSSVFHPTRSIFFVSTK-----KNIRVYDLLKQRLIKKLET-GLKEV----S  584 (707)
Q Consensus       521 V~Iwdl~~~~~~~~~~------~~~~~V~~v~fspd~~~l~v~sd-----g~I~iwDl~~~~~~~~l~~-~~~~I----~  584 (707)
                      +.|+|+.++.......      ....-+..+.|+|++.+++...+     ..|.++|..++++...+.. ...+|    .
T Consensus       230 l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~  309 (465)
T d1xfda1         230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE  309 (465)
T ss_dssp             EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred             EEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCC
Confidence            6677776654321111      11223677899999987666542     3688899999876654432 23443    3


Q ss_pred             EEEEcCCCCEEEE--EE-CCC--cEEEEECC-----CCCcceEEeecCCCCEEEE-EEcCCCCEE-EEEeCC--CcEEEE
Q 005235          585 SIAIHPAGDNLIV--GS-REG--KLCWFDMD-----LSSKPYRVLKCHPKDITNV-AFHRSYPLF-ASCSDD--CTAYVF  650 (707)
Q Consensus       585 sl~~spdg~~L~s--Gs-~Dg--~I~vwDl~-----~~~~~~~~l~~h~~~I~~v-afspdg~ll-aSgs~D--g~I~Vw  650 (707)
                      ...|+|+|..++.  .+ .+|  .+...++.     ........+....-.|..+ +|+.++..| +++..+  +.-+||
T Consensus       310 ~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly  389 (465)
T d1xfda1         310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY  389 (465)
T ss_dssp             CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred             ceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEE
Confidence            4578999975432  22 233  34444332     1123344455445556665 688887744 355544  345677


Q ss_pred             ecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEe
Q 005235          651 HGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAG  697 (707)
Q Consensus       651 d~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g  697 (707)
                      .+.    +.......++......    ..+..++.|||++.+++...
T Consensus       390 ~v~----l~g~~~~~~lt~~~~~----~~~~~~~~~S~~~~y~v~~~  428 (465)
T d1xfda1         390 SAN----TVGNFNRQCLSCDLVE----NCTYFSASFSHSMDFFLLKC  428 (465)
T ss_dssp             EEC----SSTTCCCBCSSTTSSS----SCCCCEEEECTTSSEEEEEC
T ss_pred             EEE----CCCCCcceeeccccCC----CCCEEEEEECCCCCEEEEEe
Confidence            553    3322221222111111    22478999999999987443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.68  E-value=3.3e-06  Score=84.42  Aligned_cols=219  Identities=13%  Similarity=0.154  Sum_probs=141.7

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-------CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-------GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKD  460 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-------~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~  460 (707)
                      .++++-...+.|++||. .|..+..+..       ......+++.++....+++.. .++.|.+++.             
T Consensus        35 ~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------  100 (279)
T d1q7fa_          35 DIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-------------  100 (279)
T ss_dssp             CEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-------------
T ss_pred             CEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-------------
Confidence            46666677788999985 4788777744       112345555554422222222 2223433332             


Q ss_pred             eeeecccccccCCCCcEEEEecCCccceEE-eccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee---
Q 005235          461 LLHVETPTAPDDNMASIVSWLQHDKLDGIR-LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF---  536 (707)
Q Consensus       461 v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~-~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~---  536 (707)
                                            .+...... .........+++.++|.++++....+   .+.+++..... . ..+   
T Consensus       101 ----------------------~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~---~~~~~~~~g~~-~-~~~g~~  153 (279)
T d1q7fa_         101 ----------------------YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVM---RVIIFDQNGNV-L-HKFGCS  153 (279)
T ss_dssp             ----------------------TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTT---EEEEECTTSCE-E-EEEECT
T ss_pred             ----------------------cccceeecCCCcccccceeccccCCcEEEEeeccc---eeeEeccCCce-e-eccccc
Confidence                                  11111111 13345677899999999888776655   78888765433 3 444   


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEeC--CCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCC
Q 005235          537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLET--GLKEVSSIAIHPAGDNLIVGSR-EGKLCWFDMDLS  612 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~~--~~~~I~sl~~spdg~~L~sGs~-Dg~I~vwDl~~~  612 (707)
                      .+......+++.+++.++++.. .+.|.+||.. ++.+.++-.  .......|++.++|+.+++-+. +++|.+|+.+ +
T Consensus       154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G  231 (279)
T d1q7fa_         154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G  231 (279)
T ss_dssp             TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S
T ss_pred             ccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C
Confidence            4456778899999988776666 6899999975 566666632  3345889999999997777554 4579999864 4


Q ss_pred             CcceEEeecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005235          613 SKPYRVLKCH--PKDITNVAFHRSYPLFASCSDDCTAYVFHG  652 (707)
Q Consensus       613 ~~~~~~l~~h--~~~I~~vafspdg~llaSgs~Dg~I~Vwd~  652 (707)
                       +.+.++...  ......|++.|+|.++++ +.+..|++|..
T Consensus       232 -~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~  271 (279)
T d1q7fa_         232 -QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY  271 (279)
T ss_dssp             -CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             -CEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEe
Confidence             556666433  235789999999986654 57889999954

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.67  E-value=2e-05  Score=78.54  Aligned_cols=239  Identities=12%  Similarity=0.114  Sum_probs=149.9

Q ss_pred             cEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCe
Q 005235          419 AIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMV  497 (707)
Q Consensus       419 ~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V  497 (707)
                      ....|++++++  .|+++. .++.|++|+....                         .+..|.....    ........
T Consensus        24 ~P~gvavd~dg--~i~VaD~~n~rI~v~d~~G~-------------------------~~~~~~~~~~----~~~~~~~p   72 (279)
T d1q7fa_          24 EPSGVAVNAQN--DIIVADTNNHRIQIFDKEGR-------------------------FKFQFGECGK----RDSQLLYP   72 (279)
T ss_dssp             CEEEEEECTTC--CEEEEEGGGTEEEEECTTSC-------------------------EEEEECCBSS----STTCBSSE
T ss_pred             CccEEEEcCCC--CEEEEECCCCEEEEEeCCCC-------------------------EEEEecccCC----Cccccccc
Confidence            46889999998  355554 5667888875321                         0111100000    00111233


Q ss_pred             EEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE
Q 005235          498 SSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK  574 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~  574 (707)
                      ..+++..+...++.+.... ...|.+++.... .. ..+  ........+++.+++.++++.. .+.+.+++.. ++.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~g~-~~-~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~  148 (279)
T d1q7fa_          73 NRVAVVRNSGDIIVTERSP-THQIQIYNQYGQ-FV-RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLH  148 (279)
T ss_dssp             EEEEEETTTTEEEEEECGG-GCEEEEECTTSC-EE-EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             ccccccccccccceeccCC-cccccccccccc-ce-eecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceee
Confidence            4555555443333333222 347777776433 33 445  4456678999999998777765 5778888854 66666


Q ss_pred             EEe--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee--cCCCCEEEEEEcCCCCEEEEEeC-CCcEEE
Q 005235          575 KLE--TGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK--CHPKDITNVAFHRSYPLFASCSD-DCTAYV  649 (707)
Q Consensus       575 ~l~--~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~--~h~~~I~~vafspdg~llaSgs~-Dg~I~V  649 (707)
                      ++.  .+......+++.++|..+++....+.|.+||.. + +.+.++.  +......+|++.++|+++++-+. ++.|.+
T Consensus       149 ~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~  226 (279)
T d1q7fa_         149 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-G-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI  226 (279)
T ss_dssp             EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-C-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred             cccccccccccceeeeccceeEEeeeccccceeeeecC-C-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEE
Confidence            663  344568899999999988888888999999985 3 4555553  23456789999999998877543 457999


Q ss_pred             EecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          650 FHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       650 wd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      |+.       .+..   +..+.....  ......|++.|+|.++ .++.++.|++|..
T Consensus       227 f~~-------~G~~---~~~~~~~~~--~~~p~~vav~~dG~l~-V~~~n~~v~~fr~  271 (279)
T d1q7fa_         227 FTQ-------DGQL---ISALESKVK--HAQCFDVALMDDGSVV-LASKDYRLYIYRY  271 (279)
T ss_dssp             ECT-------TSCE---EEEEEESSC--CSCEEEEEEETTTEEE-EEETTTEEEEEEC
T ss_pred             ECC-------CCCE---EEEEeCCCC--CCCEeEEEEeCCCcEE-EEeCCCeEEEEEe
Confidence            942       2222   444432221  1127899999999754 4567899999963

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.65  E-value=2e-05  Score=80.29  Aligned_cols=216  Identities=11%  Similarity=0.081  Sum_probs=137.9

Q ss_pred             CCCcEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEccCCCccEEEEEeCC-----eEEEEECCCCCchhccccc
Q 005235          386 VACYLEYKGSTDGTVRIWEVESGRCLRVLE-IGEAIQYVAWNPLPELPVLAVSVGQ-----DVLILNTGLGNEEEQRRVK  459 (707)
Q Consensus       386 ~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~-~~~~V~~v~~spdg~~~lla~s~d~-----~V~lwd~~~~~~~~~~~~~  459 (707)
                      ..+++.++-...+.|..|+..++.....+. .......|++.++|  .++++...+     .|...+....         
T Consensus        49 ~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG--~l~va~~~~~~~~~~i~~~~~~~~---------  117 (319)
T d2dg1a1          49 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG--RLFVCYLGDFKSTGGIFAATENGD---------  117 (319)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS--CEEEEECTTSSSCCEEEEECTTSC---------
T ss_pred             CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC--CEEEEecCCCccceeEEEEcCCCc---------
Confidence            345677777788889999988776555443 36678999999999  466655321     2333222221         


Q ss_pred             ceeeecccccccCCCCcEEEEecCCccceEEec---cCCCeEEEEEcCCCCEEEEEeCCC---CccEEEEEECCCCceee
Q 005235          460 DLLHVETPTAPDDNMASIVSWLQHDKLDGIRLR---HFKMVSSVEWHRRGDYLSTVMPAG---ESRAIFMHQLSKKLSHR  533 (707)
Q Consensus       460 ~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~---h~~~V~~v~~sp~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~  533 (707)
                                                .......   -...+..+++.++|++.++.....   ..+.+..++......  
T Consensus       118 --------------------------~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~--  169 (319)
T d2dg1a1         118 --------------------------NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--  169 (319)
T ss_dssp             --------------------------SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE--
T ss_pred             --------------------------eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee--
Confidence                                      1111111   123467899999998777644321   123455555544433  


Q ss_pred             eee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCC-eEE----E---EEeCCCCCeEEEEEcCCCCEEEEEECCC
Q 005235          534 IPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQ-RLI----K---KLETGLKEVSSIAIHPAGDNLIVGSREG  602 (707)
Q Consensus       534 ~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~-~~~----~---~l~~~~~~I~sl~~spdg~~L~sGs~Dg  602 (707)
                      ..+ ..-...+.++|+|+++.|+++.  .+.|..|++... ...    .   ...........|++.++|++.++....+
T Consensus       170 ~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g  249 (319)
T d2dg1a1         170 TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG  249 (319)
T ss_dssp             EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT
T ss_pred             EEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC
Confidence            233 4344568899999999887775  689999998642 111    1   1112223367899999999888888899


Q ss_pred             cEEEEECCCCCcceEEee------cCCCCEEEEEEcCCCCEEEEEe
Q 005235          603 KLCWFDMDLSSKPYRVLK------CHPKDITNVAFHRSYPLFASCS  642 (707)
Q Consensus       603 ~I~vwDl~~~~~~~~~l~------~h~~~I~~vafspdg~llaSgs  642 (707)
                      .|.+||.+ + +.+..+.      ++...+++++|.+....+++.+
T Consensus       250 ~V~~~~p~-G-~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         250 RVLVFNKR-G-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEEECTT-S-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             EEEEECCC-C-cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            99999964 5 5666664      3344678999999887666554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.59  E-value=3.2e-05  Score=78.72  Aligned_cols=229  Identities=10%  Similarity=0.104  Sum_probs=142.8

Q ss_pred             CcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCC
Q 005235          418 EAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKM  496 (707)
Q Consensus       418 ~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~  496 (707)
                      ..+..++|.++|+  |+.+. .++.|..|++.+...                         .         .........
T Consensus        40 ~~lEG~~~D~~G~--Ly~~D~~~g~I~ri~p~g~~~-------------------------~---------~~~~~~~~~   83 (319)
T d2dg1a1          40 LQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKEI-------------------------K---------RPFVSHKAN   83 (319)
T ss_dssp             CCEEEEEECTTSC--EEEEETTTCEEEEECTTTCCE-------------------------E---------EEEECSSSS
T ss_pred             cCcEeCEECCCCC--EEEEECCCCEEEEEECCCCeE-------------------------E---------EEEeCCCCC
Confidence            3456899999983  55444 566777766544311                         0         112234556


Q ss_pred             eEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeee---ccCCCeEEEEEeCCCCEEEEEeC-------CeEEEE
Q 005235          497 VSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPF---KLHGLPVSSVFHPTRSIFFVSTK-------KNIRVY  565 (707)
Q Consensus       497 V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~---~~~~~V~~v~fspd~~~l~v~sd-------g~I~iw  565 (707)
                      ...++++++|+.+++...+. ....+...+....... ...   .....+..+++.++|.+.++...       +.+..+
T Consensus        84 p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~  162 (319)
T d2dg1a1          84 PAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV  162 (319)
T ss_dssp             EEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred             eeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee-eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEE
Confidence            78999999999877654321 1235666666655543 222   22345788999999987666432       346666


Q ss_pred             ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEE-EECCCcEEEEECCCCCcceEEee-------cCCCCEEEEEEcCCCCE
Q 005235          566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIV-GSREGKLCWFDMDLSSKPYRVLK-------CHPKDITNVAFHRSYPL  637 (707)
Q Consensus       566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~s-Gs~Dg~I~vwDl~~~~~~~~~l~-------~h~~~I~~vafspdg~l  637 (707)
                      +...+. +..+.......+.|+|+|+++.|.+ -+..++|..||++..........       .....-..+++.++|++
T Consensus       163 ~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l  241 (319)
T d2dg1a1         163 SPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL  241 (319)
T ss_dssp             CTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE
T ss_pred             ecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCE
Confidence            654433 3333333345688999999987644 46678999999875432222111       11123567999999999


Q ss_pred             EEEEeCCCcEEEEecccccCCCCCCcccceEEee------CCCCCCCCCeeEEEEcCCCCEEEEEeC
Q 005235          638 FASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR------GHTSSNGRGVMDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       638 laSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~------gh~~~~~~gV~~l~fspdg~~L~s~g~  698 (707)
                      .++....+.|.+|+      - .+..   +..+.      ++...    +++++|.|....|++...
T Consensus       242 ~Va~~~~g~V~~~~------p-~G~~---l~~i~~P~~~~~~~~~----~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         242 YVAMYGQGRVLVFN------K-RGYP---IGQILIPGRDEGHMLR----STHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEETTTEEEEEC------T-TSCE---EEEEECTTGGGTCSCB----CCEEEECTTSCEEEEEEE
T ss_pred             EEEEcCCCEEEEEC------C-CCcE---EEEEeCCCcCCCcCce----eeeEEEeCCCCEEEEEcC
Confidence            99988999999994      2 2222   33333      23323    889999998887766554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.50  E-value=4.1e-05  Score=77.05  Aligned_cols=222  Identities=14%  Similarity=0.048  Sum_probs=148.1

Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          385 PVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       385 p~~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      +..+.+.++--..+.|..||..+++. ..+.....+.++++.++|  .+++++. ..|.++|+.++....          
T Consensus        27 ~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg--~l~va~~-~gl~~~d~~tg~~~~----------   92 (295)
T d2ghsa1          27 PASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDS--KQLIASD-DGLFLRDTATGVLTL----------   92 (295)
T ss_dssp             TTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETT--EEEEEET-TEEEEEETTTCCEEE----------
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecCC--CEEEEEe-CccEEeecccceeeE----------
Confidence            44556777766778899999988865 466777889999999998  5666654 568888987653211          


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC-CccEEEEEECCCCceeeeeeccCCCeE
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG-ESRAIFMHQLSKKLSHRIPFKLHGLPV  543 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg-~~~~V~Iwdl~~~~~~~~~~~~~~~V~  543 (707)
                                    +.+....      .....+..+.+.++|++.++..... ....-.+|.+..+... ..+..-....
T Consensus        93 --------------l~~~~~~------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~-~~~~~~~~~N  151 (295)
T d2ghsa1          93 --------------HAELESD------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-KLFADISIPN  151 (295)
T ss_dssp             --------------EECSSTT------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-EEEEEESSEE
T ss_pred             --------------EeeeecC------CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEE-EEeeccCCcc
Confidence                          1111000      1123467888999998776654322 1224456666565543 3334445668


Q ss_pred             EEEEeCCCCEEEEEe--CCeEEEEECCCC--------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 005235          544 SSVFHPTRSIFFVST--KKNIRVYDLLKQ--------RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS  613 (707)
Q Consensus       544 ~v~fspd~~~l~v~s--dg~I~iwDl~~~--------~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~  613 (707)
                      .++|++++..++++.  .+.|..|++...        .....+.........+++..+|++.++.-..+.|..||.+ + 
T Consensus       152 g~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G-  229 (295)
T d2ghsa1         152 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G-  229 (295)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C-
T ss_pred             eeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C-
Confidence            899999999877765  688999987531        1122222344558899999999888777778899999975 4 


Q ss_pred             cceEEeecCCCCEEEEEEc-CCCC-EEEEEeC
Q 005235          614 KPYRVLKCHPKDITNVAFH-RSYP-LFASCSD  643 (707)
Q Consensus       614 ~~~~~l~~h~~~I~~vafs-pdg~-llaSgs~  643 (707)
                      +.+..+.--...+++++|- ++.. +++|.+.
T Consensus       230 ~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         230 NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             cEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            6777777666779999996 5655 5555443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.36  E-value=0.00019  Score=71.90  Aligned_cols=183  Identities=10%  Similarity=0.114  Sum_probs=122.7

Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee--c---cCCCeEEEEEeCCCCEEEEEe-----CCeE
Q 005235          493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--K---LHGLPVSSVFHPTRSIFFVST-----KKNI  562 (707)
Q Consensus       493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~---~~~~V~~v~fspd~~~l~v~s-----dg~I  562 (707)
                      ....+.++++.++|.+++++ .+    .+.++|..++... ...  .   ....+..+.+.|+|.+.++..     .+.-
T Consensus        57 ~~~~~~~i~~~~dg~l~va~-~~----gl~~~d~~tg~~~-~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g  130 (295)
T d2ghsa1          57 LPFMGSALAKISDSKQLIAS-DD----GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAG  130 (295)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-TT----EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCE
T ss_pred             CCCCcEEEEEecCCCEEEEE-eC----ccEEeecccceee-EEeeeecCCCcccceeeEECCCCCEEEEeccccccccce
Confidence            34567889999998777654 32    6899999988764 222  1   123578899999999877654     2455


Q ss_pred             EEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEE-EECCCcEEEEECCCCC-----cc--eEEeecCCCCEEEEEEcCC
Q 005235          563 RVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIV-GSREGKLCWFDMDLSS-----KP--YRVLKCHPKDITNVAFHRS  634 (707)
Q Consensus       563 ~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~s-Gs~Dg~I~vwDl~~~~-----~~--~~~l~~h~~~I~~vafspd  634 (707)
                      .+|.+..++....+. .....+.++|+++++.|+. .+..+.|..|+++...     ..  ...+.+-.+....+++..+
T Consensus       131 ~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~  209 (295)
T d2ghsa1         131 SIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE  209 (295)
T ss_dssp             EEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred             eEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCC
Confidence            677777776554443 3345789999999987655 4567789999876321     11  1122233456788999999


Q ss_pred             CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEc-CCCCEEEEE
Q 005235          635 YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFH-PRQPWLFTA  696 (707)
Q Consensus       635 g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fs-pdg~~L~s~  696 (707)
                      |++.++.-..+.|..|+      - .+..   +..+.-....    +++++|- |+...|+..
T Consensus       210 GnlWva~~~~g~V~~~d------p-~G~~---~~~i~lP~~~----~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         210 GHIWNARWGEGAVDRYD------T-DGNH---IARYEVPGKQ----TTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             SCEEEEEETTTEEEEEC------T-TCCE---EEEEECSCSB----EEEEEEESTTSCEEEEE
T ss_pred             CCEEeeeeCCCceEEec------C-CCcE---eeEecCCCCc----eEEEEEeCCCCCEEEEE
Confidence            99888877788899994      2 2333   4555444333    9999996 677766544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.2e-05  Score=83.15  Aligned_cols=231  Identities=13%  Similarity=0.072  Sum_probs=127.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec----CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI----GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~----~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      .+++. ..+|.|.+|++.+++....+..    .-.+....||||+. .++.+..-.  .+|.-                 
T Consensus        29 ~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~-~vl~~~~~~--~~~r~-----------------   87 (465)
T d1xfda1          29 EFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVE--PIYQH-----------------   87 (465)
T ss_dssp             CBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCC--CCSSS-----------------
T ss_pred             cEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCC-eEEEEEccc--ceeEe-----------------
Confidence            34443 4578899999998876444444    34677888999994 444433211  11110                 


Q ss_pred             cccccccCCCCcEEEEecCCccceEEe---ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCC
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRL---RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHG  540 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~---~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~  540 (707)
                             +..+...++++.++....+.   .....+....|||+|++||.+.. +   .|.+.+...+.....+. +..+
T Consensus        88 -------s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~---nl~~~~~~~~~~~~lt~~g~~~  156 (465)
T d1xfda1          88 -------SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-N---NIYYCAHVGKQAIRVVSTGKEG  156 (465)
T ss_dssp             -------CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-T---EEEEESSSSSCCEEEECCCBTT
T ss_pred             -------eccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEec-c---eEEEEecCCCceEEEecccCcc
Confidence                   11223344444433322221   22344566899999999999874 3   78888877665441222 2222


Q ss_pred             C-----------------eEEEEEeCCCCEEEEEe--CCeEE---------------------------------EEECC
Q 005235          541 L-----------------PVSSVFHPTRSIFFVST--KKNIR---------------------------------VYDLL  568 (707)
Q Consensus       541 ~-----------------V~~v~fspd~~~l~v~s--dg~I~---------------------------------iwDl~  568 (707)
                      .                 -.++.|||||+.|+...  +..|.                                 ++|+.
T Consensus       157 ~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~  236 (465)
T d1xfda1         157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN  236 (465)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred             eeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecC
Confidence            2                 24677999999998864  34333                                 34443


Q ss_pred             CCeEEEEEeC------CCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCCcceEEeecC-CCCE----EEEEEcC
Q 005235          569 KQRLIKKLET------GLKEVSSIAIHPAGDNLIVGSRE----GKLCWFDMDLSSKPYRVLKCH-PKDI----TNVAFHR  633 (707)
Q Consensus       569 ~~~~~~~l~~------~~~~I~sl~~spdg~~L~sGs~D----g~I~vwDl~~~~~~~~~l~~h-~~~I----~~vafsp  633 (707)
                      ++........      ....+..+.|+|+++.++.....    ..|.++|..++ .+...+..+ ...|    ....|+|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg-~~~~~~~e~~~~wv~~~~~~p~~~~  315 (465)
T d1xfda1         237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSK  315 (465)
T ss_dssp             SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECT
T ss_pred             CCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCC-cEEEEEEEcCCceEeccCCceeEcc
Confidence            3221111110      11236788999999766654332    24788999877 433333322 2222    3467999


Q ss_pred             CCCEE--EEEe-CCCcEEEEec
Q 005235          634 SYPLF--ASCS-DDCTAYVFHG  652 (707)
Q Consensus       634 dg~ll--aSgs-~Dg~I~Vwd~  652 (707)
                      +|..+  +..+ .+|.=.+|++
T Consensus       316 dg~~~~fi~~se~~g~~~ly~~  337 (465)
T d1xfda1         316 DGRKFFFIRAIPQGGRGKFYHI  337 (465)
T ss_dssp             TSCSEEEEEEECCSSSSCEEEE
T ss_pred             CCCeeEEEEeeeecccCceEEE
Confidence            99833  3233 4454445544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.04  E-value=0.00013  Score=71.01  Aligned_cols=227  Identities=9%  Similarity=0.124  Sum_probs=121.4

Q ss_pred             EEccC--CCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEE
Q 005235          424 AWNPL--PELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVE  501 (707)
Q Consensus       424 ~~spd--g~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~  501 (707)
                      ..+|+  |+  .++-..++.|.+.++.++..                                   ..+..+.+.+...+
T Consensus         5 ~~sPdi~G~--~v~f~~~~dl~~~d~~~g~~-----------------------------------~~Lt~~~~~~~~p~   47 (281)
T d1k32a2           5 LLNPDIHGD--RIIFVCCDDLWEHDLKSGST-----------------------------------RKIVSNLGVINNAR   47 (281)
T ss_dssp             CEEEEEETT--EEEEEETTEEEEEETTTCCE-----------------------------------EEEECSSSEEEEEE
T ss_pred             ccCCCCCCC--EEEEEeCCcEEEEECCCCCE-----------------------------------EEEecCCCcccCEE
Confidence            46788  84  44445667777777765422                                   23445667788999


Q ss_pred             EcCCCCEEEEEeCCC-C--ccEEEEEECCCCceeeeee------ccCCCeEEEEEeCCCCEEEEEeC-------CeEEEE
Q 005235          502 WHRRGDYLSTVMPAG-E--SRAIFMHQLSKKLSHRIPF------KLHGLPVSSVFHPTRSIFFVSTK-------KNIRVY  565 (707)
Q Consensus       502 ~sp~g~~lat~s~dg-~--~~~V~Iwdl~~~~~~~~~~------~~~~~V~~v~fspd~~~l~v~sd-------g~I~iw  565 (707)
                      |||||++||..+..+ .  ...|.+.++.++.....+.      ........+.|+|+++.|+....       ..+...
T Consensus        48 ~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  127 (281)
T d1k32a2          48 FFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRV  127 (281)
T ss_dssp             ECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEE
T ss_pred             ECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeee
Confidence            999999999775422 1  2357788887776541111      11234567899999999887641       235566


Q ss_pred             ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC-----------cEEEEECCCCCcceEEeecCCCCEEEEEEcCC
Q 005235          566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG-----------KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS  634 (707)
Q Consensus       566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg-----------~I~vwDl~~~~~~~~~l~~h~~~I~~vafspd  634 (707)
                      +...+......   ......+.+.+++..++......           ...+...... . ......+........++++
T Consensus       128 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  202 (281)
T d1k32a2         128 ENDGINFVPLN---LGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG-A-FKKIVDMSTHVSSPVIVGH  202 (281)
T ss_dssp             EGGGTEEEECC---SCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT-E-EEEEECCSSCCEEEEEETT
T ss_pred             cCCCceeEEec---CCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeecccc-c-eeeccCCccccceeeeecc
Confidence            66655543222   22223333444444444332221           1122222211 1 2222233344555566655


Q ss_pred             CCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          635 YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       635 g~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      . ++.....++.-.||-+    ++.+..    ++.+..+..     .....|+|||+.|+.. .++.|.++|+
T Consensus       203 ~-~~~~~~~~~~~~l~~~----d~~g~~----~~~lt~~~~-----~~~~~~SpDG~~I~f~-~~~~l~~~d~  260 (281)
T d1k32a2         203 R-IYFITDIDGFGQIYST----DLDGKD----LRKHTSFTD-----YYPRHLNTDGRRILFS-KGGSIYIFNP  260 (281)
T ss_dssp             E-EEEEECTTSSCEEEEE----ETTSCS----CEECCCCCS-----SCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred             c-cceecccccccceEEE----eCCCCc----eEEeecCCC-----cccccCcCCCCEEEEE-eCCEEEEEEC
Confidence            3 3333334444444422    333332    233433332     3334699999988764 4677888774

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.83  E-value=0.00052  Score=66.50  Aligned_cols=223  Identities=11%  Similarity=0.070  Sum_probs=114.7

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCC-----eEEEEECCCCCchhccccccee
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQ-----DVLILNTGLGNEEEQRRVKDLL  462 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~-----~V~lwd~~~~~~~~~~~~~~v~  462 (707)
                      .++|++  +|.|.+.|+.+|+..+.....+.+...+|||||. .|+.++ .++     .|.+++..++....        
T Consensus        14 ~v~f~~--~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~-~iaf~~~~~~~~~~~~i~~~~~~~g~~~~--------   82 (281)
T d1k32a2          14 RIIFVC--CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYFYNGENGEIKR--------   82 (281)
T ss_dssp             EEEEEE--TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEEEETTTTEEEE--------
T ss_pred             EEEEEe--CCcEEEEECCCCCEEEEecCCCcccCEEECCCCC-EEEEEEeeCCCCCceEEEEEEecCCceEE--------
Confidence            355553  3558888999888765444578889999999995 454443 222     35555544432110        


Q ss_pred             eecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC---ccEEEEEECCCCceeeeeeccC
Q 005235          463 HVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE---SRAIFMHQLSKKLSHRIPFKLH  539 (707)
Q Consensus       463 ~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~---~~~V~Iwdl~~~~~~~~~~~~~  539 (707)
                                         +. ...............++|+|+|+.|+.......   ...+...+.......   ....
T Consensus        83 -------------------lt-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  139 (281)
T d1k32a2          83 -------------------IT-YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV---PLNL  139 (281)
T ss_dssp             -------------------CC-CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE---ECCS
T ss_pred             -------------------ee-ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE---EecC
Confidence                               00 000011122345577899999999987654331   124445555444332   1222


Q ss_pred             CCeEEEEEeCCCCEEEEEe-C-----------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC--CcEE
Q 005235          540 GLPVSSVFHPTRSIFFVST-K-----------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE--GKLC  605 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~s-d-----------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D--g~I~  605 (707)
                      +....+.+.+.+..++... .           ....++......... ............++++. .+.....+  ..|.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~  217 (281)
T d1k32a2         140 GPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK-IVDMSTHVSSPVIVGHR-IYFITDIDGFGQIY  217 (281)
T ss_dssp             CSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE-EECCSSCCEEEEEETTE-EEEEECTTSSCEEE
T ss_pred             CccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceee-ccCCccccceeeeeccc-cceecccccccceE
Confidence            2333444444444444432 1           112222222222222 22333445556666543 22333333  3477


Q ss_pred             EEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       606 vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                      ++|++..  ..+.+..+.. .....|+|+|+.|+.. .++.|++++
T Consensus       218 ~~d~~g~--~~~~lt~~~~-~~~~~~SpDG~~I~f~-~~~~l~~~d  259 (281)
T d1k32a2         218 STDLDGK--DLRKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFN  259 (281)
T ss_dssp             EEETTSC--SCEECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred             EEeCCCC--ceEEeecCCC-cccccCcCCCCEEEEE-eCCEEEEEE
Confidence            7888754  2444543322 2334689999977654 467888884

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=0.027  Score=55.01  Aligned_cols=223  Identities=10%  Similarity=0.110  Sum_probs=140.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPT  468 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~  468 (707)
                      .+++.-+ ..++.|+|+++.+.++.+...+.|..=.|-.+.   .++.-.+..|+-|+++..                  
T Consensus        75 ~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~---~L~lVT~taVYHW~~~g~------------------  132 (327)
T d1utca2          75 KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN---TVALVTDNAVYHWSMEGE------------------  132 (327)
T ss_dssp             SEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSS---EEEEECSSEEEEEESSSS------------------
T ss_pred             cEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCC---EEEEEcCCceEEEcccCC------------------
Confidence            3444333 458999999999999999999999888998776   677778889999997432                  


Q ss_pred             cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeC----CCCccEEEEEECCCCceeeeee-ccCCCeE
Q 005235          469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMP----AGESRAIFMHQLSKKLSHRIPF-KLHGLPV  543 (707)
Q Consensus       469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~----dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~  543 (707)
                           ...++++++.....      ...|..-..++++++++..+-    .+-.+.+.+|..+.+.++  ++ +|-+...
T Consensus       133 -----s~P~k~fdR~~~L~------~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ--~ieGhaa~F~  199 (327)
T d1utca2         133 -----SQPVKMFDRHSSLA------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASFA  199 (327)
T ss_dssp             -----CCCEEEEECCGGGT------TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE--EECCSEEEEE
T ss_pred             -----CCchhhhhhccccc------CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc--cccceeeeeE
Confidence                 23456665543321      344556666777777665442    112348889999888774  55 5433333


Q ss_pred             EEEEeCC--C-CEEEEEe----CCeEEEEECCCC---------eEEEEEeCC---CCCeEEEEEcCCCCEEEEEECCCcE
Q 005235          544 SSVFHPT--R-SIFFVST----KKNIRVYDLLKQ---------RLIKKLETG---LKEVSSIAIHPAGDNLIVGSREGKL  604 (707)
Q Consensus       544 ~v~fspd--~-~~l~v~s----dg~I~iwDl~~~---------~~~~~l~~~---~~~I~sl~~spdg~~L~sGs~Dg~I  604 (707)
                      .+.+..+  . .+|+.+.    .+.++|.++...         +.+..+...   ..-.-+|.+|+.-..+..-+.-|.|
T Consensus       200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i  279 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  279 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEE
Confidence            3322211  1 2333332    368999988652         111111111   2446788999988899999999999


Q ss_pred             EEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005235          605 CWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTA  647 (707)
Q Consensus       605 ~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I  647 (707)
                      .+||+.++ .++..-+--...|...+-+....=+++...+|.|
T Consensus       280 ~lyDleTg-t~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         280 HLYDLETG-TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             EEEETTTC-CEEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEEEcccc-cEEEEeecCCCceEEeccCCCCceEEEECCCCeE
Confidence            99999998 5555555445555544444443334444455544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.69  E-value=0.00072  Score=69.90  Aligned_cols=202  Identities=10%  Similarity=-0.010  Sum_probs=128.7

Q ss_pred             EEEEcC---CCCEEEEEeCCCCccEEEEEECCCCceeeeee--ccCCCeEEEEEeC--CCCEEEEEeC------------
Q 005235          499 SVEWHR---RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF--KLHGLPVSSVFHP--TRSIFFVSTK------------  559 (707)
Q Consensus       499 ~v~~sp---~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~--~~~~~V~~v~fsp--d~~~l~v~sd------------  559 (707)
                      .+++..   ||+|+++....  +..|.+-|+.+.++. ..+  .....+..+...+  +..+++.+++            
T Consensus        89 ~~S~TdGtyDGrylFVNDka--n~RVAvIdl~~fkt~-kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l  165 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKA--NTRVARVRCDVMKCD-AILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM  165 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETT--TTEEEEEETTTTEEE-EEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred             cccccCCccceeEEEEEcCC--CceEEEEECcceeee-EEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccc
Confidence            455543   78998887653  359999999998875 333  5555667666654  4556666553            


Q ss_pred             -------CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC------------------------------
Q 005235          560 -------KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG------------------------------  602 (707)
Q Consensus       560 -------g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg------------------------------  602 (707)
                             +.+.++|..+.+...++... +....++++|+|+++++.+++.                              
T Consensus       166 ~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~  244 (459)
T d1fwxa2         166 EDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  244 (459)
T ss_dssp             TCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             cchhhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhh
Confidence                   23678999998888777654 4567899999999999987642                              


Q ss_pred             --------cEEEEECCC--CCcceEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccCCCCCCcccceEEee
Q 005235          603 --------KLCWFDMDL--SSKPYRVLKCHPKDITNVAFHRSYPLFASCS-DDCTAYVFHGMVYSDLNQNPLIVPLEILR  671 (707)
Q Consensus       603 --------~I~vwDl~~--~~~~~~~l~~h~~~I~~vafspdg~llaSgs-~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~  671 (707)
                              .+.+.|...  +...++.+.- ......|.++|||+++++++ .+.+|-|+|+....++.... ..|...+.
T Consensus       245 ~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~-~~~~~~~~  322 (459)
T d1fwxa2         245 AGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN-ADPRSAVV  322 (459)
T ss_dssp             HTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC-C-GGGGEE
T ss_pred             cCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhccc-CCccccEE
Confidence                    223334332  1112222221 12245689999999776655 78899999886543332111 11122222


Q ss_pred             CCCCCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005235          672 GHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLYCH  707 (707)
Q Consensus       672 gh~~~~~~gV~~l~fspdg~~L~s~g~Dg~IrlWdl  707 (707)
                      +.-. -++|-+..+|..+|.-..|.--|..|--|++
T Consensus       323 ~e~e-lglgPLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         323 AEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             ECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             eecc-cCcCccccccCCCceEEEEeeccceEEEEec
Confidence            2211 2567899999998865556668999999984

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.033  Score=53.90  Aligned_cols=204  Identities=10%  Similarity=0.047  Sum_probs=119.4

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEI-GEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVET  466 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~-~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~  466 (707)
                      .+.++-..++.|+..++..+.....+.. ...+.+|++..-+. .|+.+. ..+.|.+.++...                
T Consensus        49 ~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~----------------  111 (263)
T d1npea_          49 VVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGT----------------  111 (263)
T ss_dssp             EEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTT-EEEEEETTTTEEEEEETTSC----------------
T ss_pred             EEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCC-eEEEeccCCCEEEEEecCCc----------------
Confidence            3444445667777777765544433433 35678888876553 344443 4456666665432                


Q ss_pred             cccccCCCCcEEEEecCCccceEEe-ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEE
Q 005235          467 PTAPDDNMASIVSWLQHDKLDGIRL-RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVS  544 (707)
Q Consensus       467 ~~~~~~~d~~i~iW~~~~~~~~~~~-~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~  544 (707)
                                         ....+. .....+..++++|...++...........|.--++...... ... ..-..+.+
T Consensus       112 -------------------~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i~~~~~~~P~g  171 (263)
T d1npea_         112 -------------------QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLPNG  171 (263)
T ss_dssp             -------------------SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCEEE
T ss_pred             -------------------eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-eeeeecccccce
Confidence                               111222 22356789999998887776554332234555566655443 223 44456789


Q ss_pred             EEEeCCCCEEEEEe--CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcceEEee-
Q 005235          545 SVFHPTRSIFFVST--KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPYRVLK-  620 (707)
Q Consensus       545 v~fspd~~~l~v~s--dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~~~l~-  620 (707)
                      +++.+.+..|+.+.  .+.|...|+........+.+ .....+|++.  +.+|... ...+.|...|..++ +....+. 
T Consensus       172 laiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~-~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g-~~~~~~~~  247 (263)
T d1npea_         172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS-KEMDTFHP  247 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT-EEEEEECC
T ss_pred             EEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC-CCCcEEEEEE--CCEEEEEECCCCEEEEEECCCC-ccceEECC
Confidence            99999888888776  58899999975544333433 3445688886  4455444 45678888888766 4444443 


Q ss_pred             cCCCCEEEEEEcC
Q 005235          621 CHPKDITNVAFHR  633 (707)
Q Consensus       621 ~h~~~I~~vafsp  633 (707)
                      .......++++.+
T Consensus       248 ~~~~~~~gi~v~~  260 (263)
T d1npea_         248 HKQTRLYGITIAL  260 (263)
T ss_dssp             SSCCCCCCEEEEC
T ss_pred             CCCCCcceEEEeC
Confidence            2223344554433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.072  Score=51.45  Aligned_cols=224  Identities=8%  Similarity=0.029  Sum_probs=135.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEE-eCCeEEEEECCCCCchhcccccceeeecccc
Q 005235          390 LEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVS-VGQDVLILNTGLGNEEEQRRVKDLLHVETPT  468 (707)
Q Consensus       390 ~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s-~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~  468 (707)
                      +||+-+  ..|+-.++.+......+.....+.+|+|.+..+ .++-+- ..+.|.-.++......               
T Consensus         4 Ll~s~~--~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~-~lYw~D~~~~~I~~~~l~~~~~~---------------   65 (266)
T d1ijqa1           4 LFFTNR--HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGV---------------   65 (266)
T ss_dssp             EEEECB--SSEEEEETTSCCCEEEECSCSSEEEEEEETTTT-EEEEEETTTTEEEEEEC---------------------
T ss_pred             EEEECC--CeEEEEECCCCcceeeeCCCCceEEEEEEeCCC-EEEEEECCCCEEEEEEecCCCCC---------------
Confidence            445433  348888988766554555566778899988764 344433 3444544443221000               


Q ss_pred             cccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEE
Q 005235          469 APDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVF  547 (707)
Q Consensus       469 ~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~f  547 (707)
                                     +............+..+++...+..|..+...  .+.|.+.++...... ..+ .....+..+++
T Consensus        66 ---------------~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~--~~~I~v~~~~g~~~~-~~~~~~~~~P~~l~v  127 (266)
T d1ijqa1          66 ---------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKRK-TLFRENGSKPRAIVV  127 (266)
T ss_dssp             -----------------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSSEE-EEEECTTCCEEEEEE
T ss_pred             ---------------cceEEEEeCCCCCcceEEEeeccceEEEEecC--CCEEEeEecCCceEE-EEEcCCCCCcceEEE
Confidence                           00001122223456788888767766665543  348999999877654 444 55567899999


Q ss_pred             eCCCCEEEEEe---CCeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcceEEeecCC
Q 005235          548 HPTRSIFFVST---KKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG-SREGKLCWFDMDLSSKPYRVLKCHP  623 (707)
Q Consensus       548 spd~~~l~v~s---dg~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sG-s~Dg~I~vwDl~~~~~~~~~l~~h~  623 (707)
                      +|...+|+.+.   .+.|...++............-...++|++++.++.|..+ +..+.|...+++.. .....+....
T Consensus       128 d~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~-~~~~~~~~~~  206 (266)
T d1ijqa1         128 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEK  206 (266)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTT
T ss_pred             EcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCC-CEEEEEeCCC
Confidence            99877777654   3568778876544433333444678999999988777665 55678999998754 3233333222


Q ss_pred             --CCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005235          624 --KDITNVAFHRSYPLFASCSDDCTAYVFH  651 (707)
Q Consensus       624 --~~I~~vafspdg~llaSgs~Dg~I~Vwd  651 (707)
                        ....++++. .+.++.+-..++.|...+
T Consensus       207 ~~~~p~~lav~-~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         207 RLAHPFSLAVF-EDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             TTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             cccccEEEEEE-CCEEEEEECCCCeEEEEE
Confidence              345677776 345555555677777774

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.12  Score=49.67  Aligned_cols=161  Identities=9%  Similarity=-0.020  Sum_probs=104.3

Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCc---eeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeE
Q 005235          489 IRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKL---SHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNI  562 (707)
Q Consensus       489 ~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~---~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I  562 (707)
                      .+......+..++|++..+.|.......  +.|.-.++....   .....+ .....+.++++.+.+..|+.+.  .+.|
T Consensus        24 ~~~~~~~~~~~id~d~~~~~lYw~D~~~--~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I  101 (266)
T d1ijqa1          24 SLIPNLRNVVALDTEVASNRIYWSDLSQ--RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV  101 (266)
T ss_dssp             EEECSCSSEEEEEEETTTTEEEEEETTT--TEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             eeeCCCCceEEEEEEeCCCEEEEEECCC--CEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEE
Confidence            3344556778999999888777665432  367666665422   110222 3345678899998888888776  5899


Q ss_pred             EEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEE
Q 005235          563 RVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGS--REGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFAS  640 (707)
Q Consensus       563 ~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs--~Dg~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaS  640 (707)
                      .+.++........+.........|+++|...+|....  ..+.|.-.+++.. .........-...+++++.+.+..|..
T Consensus       102 ~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC-ceecccccccceeeEEEeeccccEEEE
Confidence            9999987665555666666789999999766666554  3346777777643 323333333456789999987775555


Q ss_pred             E-eCCCcEEEEec
Q 005235          641 C-SDDCTAYVFHG  652 (707)
Q Consensus       641 g-s~Dg~I~Vwd~  652 (707)
                      + +..+.|...+.
T Consensus       181 ~d~~~~~I~~~~~  193 (266)
T d1ijqa1         181 VDSKLHSISSIDV  193 (266)
T ss_dssp             EETTTTEEEEEET
T ss_pred             ecCCcCEEEEEEC
Confidence            4 55677877743

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.85  E-value=0.21  Score=51.04  Aligned_cols=237  Identities=10%  Similarity=0.087  Sum_probs=137.1

Q ss_pred             CcEEEE-EeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeee
Q 005235          388 CYLEYK-GSTDGTVRIWEVESGRCLRVLEI--GEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHV  464 (707)
Q Consensus       388 ~~~l~s-gs~DgtVrIWd~~tg~~l~~l~~--~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~  464 (707)
                      +.+++. -..+..|-+-|+.+.++.+.+..  ...+..++..++++...+++.....+-+  +..+. .+... ..    
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~--pndg~-~l~d~-~~----  170 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPL--VNDGT-NMEDV-AN----  170 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEES--SCSSS-STTCG-G-----
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCcccccc--CCCCc-cccch-hh----
Confidence            345554 45788999999999999876655  6788888887766544555554443322  11110 00000 00    


Q ss_pred             cccccccCCCCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCC------------c--------------
Q 005235          465 ETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGE------------S--------------  518 (707)
Q Consensus       465 ~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~------------~--------------  518 (707)
                              ..+.+...+..+..........+....++++++|+++++.+.+..            .              
T Consensus       171 --------y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a  242 (459)
T d1fwxa2         171 --------YVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  242 (459)
T ss_dssp             --------EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             --------cceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHh
Confidence                    011233444444444333334556778999999999998876531            1              


Q ss_pred             ---------cEEEEEECCCCc--eeeeeeccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCCC------------eEE
Q 005235          519 ---------RAIFMHQLSKKL--SHRIPFKLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLKQ------------RLI  573 (707)
Q Consensus       519 ---------~~V~Iwdl~~~~--~~~~~~~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~~------------~~~  573 (707)
                               +.+.+-|..+..  .....+........+.++|||+++++++  +.+|.|+|+++-            ..+
T Consensus       243 v~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~  322 (459)
T d1fwxa2         243 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  322 (459)
T ss_dssp             HHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred             hhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence                     123333433211  1101123334467889999999999998  899999999641            122


Q ss_pred             EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---------CcceEEeecCCCCEEEE------EEcCCCCEE
Q 005235          574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS---------SKPYRVLKCHPKDITNV------AFHRSYPLF  638 (707)
Q Consensus       574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~---------~~~~~~l~~h~~~I~~v------afspdg~ll  638 (707)
                      .....+. ....-+|+..|.-..+---|..|.-|++...         ...+..+.-|-. +-.+      ...|+|++|
T Consensus       323 ~e~elgl-gPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l  400 (459)
T d1fwxa2         323 AEPELGL-GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWL  400 (459)
T ss_dssp             ECCBCCS-CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEE
T ss_pred             eecccCc-CccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEE
Confidence            2222232 2456688888865556667999999998521         123334443322 1222      236788888


Q ss_pred             EEEe
Q 005235          639 ASCS  642 (707)
Q Consensus       639 aSgs  642 (707)
                      ++..
T Consensus       401 ~~~n  404 (459)
T d1fwxa2         401 VCLS  404 (459)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8775

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.47  E-value=0.39  Score=47.71  Aligned_cols=252  Identities=8%  Similarity=0.003  Sum_probs=124.5

Q ss_pred             EEEEeCCCCeEEE--EEec--CCcEEEEEEccCCCccEEEEEe--CCeEEEEECCCCCchhcccccceeeecccccccCC
Q 005235          400 VRIWEVESGRCLR--VLEI--GEAIQYVAWNPLPELPVLAVSV--GQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDN  473 (707)
Q Consensus       400 VrIWd~~tg~~l~--~l~~--~~~V~~v~~spdg~~~lla~s~--d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~  473 (707)
                      +.+||..+++-..  ....  .....+.++.+++  .+++++.  ...+.+||+.+.                       
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g--~i~v~Gg~~~~~~~~yd~~~~-----------------------  108 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG--QIVVTGGNDAKKTSLYDSSSD-----------------------  108 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS--CEEEECSSSTTCEEEEEGGGT-----------------------
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCC--cEEEeecCCCcceeEecCccC-----------------------
Confidence            7789999876432  2222  2233466788998  4555553  247888886553                       


Q ss_pred             CCcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCC---CccEEEEEECCCCceeeeee---------cc---
Q 005235          474 MASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAG---ESRAIFMHQLSKKLSHRIPF---------KL---  538 (707)
Q Consensus       474 d~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg---~~~~V~Iwdl~~~~~~~~~~---------~~---  538 (707)
                           .|.....     ......-.+++..++|..++.++...   ....+.+||..+..-...+-         .+   
T Consensus       109 -----~w~~~~~-----~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~  178 (387)
T d1k3ia3         109 -----SWIPGPD-----MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL  178 (387)
T ss_dssp             -----EEEECCC-----CSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred             -----ccccccc-----ccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccce
Confidence                 2221110     01111223566778999999887543   23478999998765431110         00   


Q ss_pred             --CCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEEEEe--CCC------CCeEEEEE-cCCCCEEEEEECCC----
Q 005235          539 --HGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIKKLE--TGL------KEVSSIAI-HPAGDNLIVGSREG----  602 (707)
Q Consensus       539 --~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~~l~--~~~------~~I~sl~~-spdg~~L~sGs~Dg----  602 (707)
                        ...-..+...+++..++.+. .+.+.+++..+........  ...      ..-.++.+ ..+++.++.|+...    
T Consensus       179 ~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~  258 (387)
T d1k3ia3         179 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS  258 (387)
T ss_dssp             GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred             eeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCC
Confidence              00111223345666666555 5777788877764332211  110      11122323 34566777775421    


Q ss_pred             ----cEEEEECCCCCcceEEeec-----CCCCEEEEEEcCCCCEEEEEeCCC-----------cEEEEecccccCCCCCC
Q 005235          603 ----KLCWFDMDLSSKPYRVLKC-----HPKDITNVAFHRSYPLFASCSDDC-----------TAYVFHGMVYSDLNQNP  662 (707)
Q Consensus       603 ----~I~vwDl~~~~~~~~~l~~-----h~~~I~~vafspdg~llaSgs~Dg-----------~I~Vwd~~~~~Dl~~~~  662 (707)
                          ...+.++............     +...-.+.+..+++++++.|+.+.           ++.+||...      +.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~------~~  332 (387)
T d1k3ia3         259 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ------DT  332 (387)
T ss_dssp             BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG------TE
T ss_pred             cccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCC------Ce
Confidence                2334443321111111111     111223455568999999888431           467785431      11


Q ss_pred             cccceEEeeCCCCCCCCCe-eEEEEcCCCCEEEEEeC
Q 005235          663 LIVPLEILRGHTSSNGRGV-MDCKFHPRQPWLFTAGA  698 (707)
Q Consensus       663 ~~~pl~~l~gh~~~~~~gV-~~l~fspdg~~L~s~g~  698 (707)
                          -..+......  +.- ......+||+.|+.||.
T Consensus       333 ----W~~~~~~~~~--R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         333 ----FYKQNPNSIV--RVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             ----EEECCCCSSC--CCTTEEEEECTTSCEEEEECC
T ss_pred             ----EEECCCCCCc--ccceEEEEECCCCEEEEEeCC
Confidence                1111111000  001 12346799999999884

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.54  Score=44.85  Aligned_cols=156  Identities=13%  Similarity=0.037  Sum_probs=103.8

Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe--CCeEEEEECCC
Q 005235          493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST--KKNIRVYDLLK  569 (707)
Q Consensus       493 h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s--dg~I~iwDl~~  569 (707)
                      +...+..|+|....+.+......  .+.|...++...... ..+ .....+.++++..-+..|+.+.  .+.|.+.++..
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~--~~~I~~~~l~g~~~~-~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDIS--EPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETT--TTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCcEEEEEEEeCCCEEEEEECC--CCeEEEEEcccCCcE-EEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            34457889999888877766543  248888888766554 334 4446789999998777777765  58999999986


Q ss_pred             CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcceEEeecCCCCEEEEEEcCCCCEEEEE-eCCC
Q 005235          570 QRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE---GKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASC-SDDC  645 (707)
Q Consensus       570 ~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~D---g~I~vwDl~~~~~~~~~l~~h~~~I~~vafspdg~llaSg-s~Dg  645 (707)
                      ......+......+..++++|.+.+|......   +.|.-.+++.. .........-....++++.+.+..|..+ ...+
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-CceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence            54333333344678999999988877755432   23555566533 2233333333566899998877766544 4667


Q ss_pred             cEEEEec
Q 005235          646 TAYVFHG  652 (707)
Q Consensus       646 ~I~Vwd~  652 (707)
                      .|...+.
T Consensus       190 ~I~~~~~  196 (263)
T d1npea_         190 RAECLNP  196 (263)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            8887754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.19  E-value=0.63  Score=45.09  Aligned_cols=251  Identities=10%  Similarity=0.140  Sum_probs=147.9

Q ss_pred             eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeCCeEEEEECCCCCchhcccccceeeecccccccCCC
Q 005235          395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEEQRRVKDLLHVETPTAPDDNM  474 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~~~~~~~v~~~~~~~~~~~~d  474 (707)
                      +....|.|-|+..+..+..-..  .-.+.-.+|..  .++|.-.+.++.++|+++....                     
T Consensus        42 ~~~~~VvIidl~n~~~~~Rrpi--~AdsAIMhP~~--~IiALrag~~LQiFnletK~kl---------------------   96 (327)
T d1utca2          42 GEQAQVVIIDMNDPSNPIRRPI--SADSAIMNPAS--KVIALKAGKTLQIFNIEMKSKM---------------------   96 (327)
T ss_dssp             TTEEEEEEEETTSTTSCEEEEC--CCSEEEECSSS--SEEEEEETTEEEEEETTTTEEE---------------------
T ss_pred             CCCceEEEEECCCCCcceeccc--chhhhhcCCCC--cEEEEecCCeEEEEehhHhhhh---------------------
Confidence            3445677888765542222111  11234467887  6888888889999998765321                     


Q ss_pred             CcEEEEecCCccceEEeccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-cc----CCCeEEEEEeC
Q 005235          475 ASIVSWLQHDKLDGIRLRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KL----HGLPVSSVFHP  549 (707)
Q Consensus       475 ~~i~iW~~~~~~~~~~~~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~----~~~V~~v~fsp  549 (707)
                                    ........|.--.|-.+ +.|+.++..    .|+-|++.........| .|    ...|..-..++
T Consensus        97 --------------ks~~~~e~VvfWkWis~-~~L~lVT~t----aVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~  157 (327)
T d1utca2          97 --------------KAHTMTDDVTFWKWISL-NTVALVTDN----AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA  157 (327)
T ss_dssp             --------------EEEECSSCCCEEEESSS-SEEEEECSS----EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT
T ss_pred             --------------ceEEcCCCcEEEEecCC-CEEEEEcCC----ceEEEcccCCCCchhhhhhcccccCceEEEEEECC
Confidence                          11123445555566533 456555542    89999996544332445 33    24566777889


Q ss_pred             CCCEEEEEe----C----CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCC---CEEEEE---ECCCcEEEEECCCCC--
Q 005235          550 TRSIFFVST----K----KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG---DNLIVG---SREGKLCWFDMDLSS--  613 (707)
Q Consensus       550 d~~~l~v~s----d----g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg---~~L~sG---s~Dg~I~vwDl~~~~--  613 (707)
                      +.++++..+    +    |.+.+|..+.+ ..+.+.+|......+.+.-+.   ..++.+   ...+++.|.++....  
T Consensus       158 ~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g  236 (327)
T d1utca2         158 KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG  236 (327)
T ss_dssp             TSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTT
T ss_pred             CCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccC
Confidence            999987642    2    78999998754 455677775544444332111   233333   233689999987632  


Q ss_pred             -cce--EEee------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEE
Q 005235          614 -KPY--RVLK------CHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDC  684 (707)
Q Consensus       614 -~~~--~~l~------~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l  684 (707)
                       .++  +...      .-..---++..|+.+.++..-+.-|.|++|      |+.++.+   +..-+-....    |...
T Consensus       237 ~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~ly------DleTgt~---i~~nRIs~~~----iF~~  303 (327)
T d1utca2         237 NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY------DLETGTC---IYMNRISGET----IFVT  303 (327)
T ss_dssp             CCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEE------ETTTCCE---EEEEECCSSC----EEEE
T ss_pred             CCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEE------EcccccE---EEEeecCCCc----eEEe
Confidence             111  1111      112335578889999999999999999999      5555544   3332322332    5555


Q ss_pred             EEcCCCCEEEEEeCCCcEE
Q 005235          685 KFHPRQPWLFTAGADSVIR  703 (707)
Q Consensus       685 ~fspdg~~L~s~g~Dg~Ir  703 (707)
                      +-+....-+++...+|.|.
T Consensus       304 a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         304 APHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEETTTTEEEEEETTSEEE
T ss_pred             ccCCCCceEEEECCCCeEE
Confidence            5555555666666777654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.90  E-value=1.1  Score=45.58  Aligned_cols=218  Identities=9%  Similarity=0.027  Sum_probs=113.3

Q ss_pred             eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEccCCCccEEEEEeC----------------CeEEEEECCCCCch---hc
Q 005235          395 STDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVG----------------QDVLILNTGLGNEE---EQ  455 (707)
Q Consensus       395 s~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~spdg~~~lla~s~d----------------~~V~lwd~~~~~~~---~~  455 (707)
                      ++-.+|++.|+.+|+.+...-.......++|++|+. .|+-...+                ..|.++.+.+....   +.
T Consensus       148 ~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~-~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~  226 (430)
T d1qfma1         148 SDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGK-GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA  226 (430)
T ss_dssp             CSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSS-EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred             CchheeEEeccCcceecccccccccccceEEcCCCC-EEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccc
Confidence            444579999999999764221122235789999995 45544322                25777777765321   11


Q ss_pred             ccc-c--ceeeeccc------c--cccCCCCcEEEEec--CCccc--------eEEeccCCCeEEEEEcCCCCEEEEEeC
Q 005235          456 RRV-K--DLLHVETP------T--APDDNMASIVSWLQ--HDKLD--------GIRLRHFKMVSSVEWHRRGDYLSTVMP  514 (707)
Q Consensus       456 ~~~-~--~v~~~~~~------~--~~~~~d~~i~iW~~--~~~~~--------~~~~~h~~~V~~v~~sp~g~~lat~s~  514 (707)
                      ... .  .+..+..+      +  ..........+|-.  .....        ..+............+.++.+++....
T Consensus       227 ~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~  306 (430)
T d1qfma1         227 EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNR  306 (430)
T ss_dssp             CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECT
T ss_pred             ccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccCc
Confidence            111 1  11111111      1  11122223333322  11100        011111222222333334445555555


Q ss_pred             CCCccEEEEEECCCCcee-eeee--ccCCCeEEEEEeCCCCEEEEEe--C--CeEEEEECCCCeEEEEEeCCCCCeEEEE
Q 005235          515 AGESRAIFMHQLSKKLSH-RIPF--KLHGLPVSSVFHPTRSIFFVST--K--KNIRVYDLLKQRLIKKLETGLKEVSSIA  587 (707)
Q Consensus       515 dg~~~~V~Iwdl~~~~~~-~~~~--~~~~~V~~v~fspd~~~l~v~s--d--g~I~iwDl~~~~~~~~l~~~~~~I~sl~  587 (707)
                      ++.+..|...++...... ...+  .+...+..-.+...+.+|++..  +  ..|+++++.++.....+....+.|..+.
T Consensus       307 ~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~  386 (430)
T d1qfma1         307 HSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYS  386 (430)
T ss_dssp             TCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEE
T ss_pred             ccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeecc
Confidence            555568888888764321 1233  3445555555555556666554  4  5699999998877666655556676666


Q ss_pred             EcCCCCEEEEEECC----CcEEEEECCCCC
Q 005235          588 IHPAGDNLIVGSRE----GKLCWFDMDLSS  613 (707)
Q Consensus       588 ~spdg~~L~sGs~D----g~I~vwDl~~~~  613 (707)
                      ..++...+...-.+    .+++-+|+.++.
T Consensus       387 ~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         387 GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            66666655543222    568888888763

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.80  E-value=1.2  Score=47.15  Aligned_cols=61  Identities=18%  Similarity=0.112  Sum_probs=41.3

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecC-----------Cc-EEEEEEccCCCccEEEEEeCCeEEEEECCCCCc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIG-----------EA-IQYVAWNPLPELPVLAVSVGQDVLILNTGLGNE  452 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~-----------~~-V~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~  452 (707)
                      ..+|.++.++.|.-.|..||+.+..+...           .. -..++...+   .++.+..++.|.-+|..++..
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~g~l~Alda~tG~~  139 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGD---KVYVGTLDGRLIALDAKTGKA  139 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBT---EEEEECTTSEEEEEETTTCCE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCC---eEEEEeCCCEEEEEECCCCcE
Confidence            47778888999999999999999887430           01 112222222   477777778888778777754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.51  E-value=2  Score=45.59  Aligned_cols=61  Identities=15%  Similarity=0.164  Sum_probs=42.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecC-----------CcE-EEEEEccCCCccEEEEEeCCeEEEEECCCCCc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIG-----------EAI-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNE  452 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~-----------~~V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~  452 (707)
                      ..+|.++.++.|.-.|..||+.+.++...           ..+ ..+++..+   .++.++.++.+.-+|..++..
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~v~~~t~~g~l~alda~tG~~  150 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKG---KVYVGAWDGRLIALDAATGKE  150 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETT---EEEEECTTSEEEEEETTTCCE
T ss_pred             CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECC---cEEEEecccceeeeccccccc
Confidence            47888889999999999999999887541           111 12333332   467777778887778777754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.40  E-value=1.3  Score=47.28  Aligned_cols=80  Identities=14%  Similarity=0.046  Sum_probs=49.9

Q ss_pred             CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecC-CCCEEEEEEcCCCC-E
Q 005235          560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCH-PKDITNVAFHRSYP-L  637 (707)
Q Consensus       560 g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h-~~~I~~vafspdg~-l  637 (707)
                      |.|.-+|+.+++.+.+........... +.-.|.+|++|+.||.++-||.+++ +.+-.+... ...-.-+.|..+|+ +
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~TagglVf~G~~dg~l~A~Da~tG-e~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGT-LYTKGGLVWYATLDGYLKALDNKDG-KELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcce-eEecCCEEEEECCCCeEEEEECCCC-cEEEEEECCCCceecceEEEECCEEE
Confidence            368888999998887765432222111 1224668889999999999999998 445444422 22222356666887 4


Q ss_pred             EEEE
Q 005235          638 FASC  641 (707)
Q Consensus       638 laSg  641 (707)
                      +++.
T Consensus       522 i~v~  525 (571)
T d2ad6a1         522 IGSM  525 (571)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.25  E-value=0.61  Score=46.23  Aligned_cols=118  Identities=13%  Similarity=0.050  Sum_probs=74.7

Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceeeeee-ccCCCeEEEEEeCCCCEEEEEe-C------CeEE
Q 005235          492 RHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPF-KLHGLPVSSVFHPTRSIFFVST-K------KNIR  563 (707)
Q Consensus       492 ~h~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~-~~~~~V~~v~fspd~~~l~v~s-d------g~I~  563 (707)
                      .+.......++.++|.+++.|+.+.  ..+.+||..+......+. .....-.+++..+++.++++++ .      ..+.
T Consensus        73 ~~~~~~~~~~~~~~g~i~v~Gg~~~--~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~  150 (387)
T d1k3ia3          73 KHDMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE  150 (387)
T ss_dssp             SCCCSSCEEEECTTSCEEEECSSST--TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEE
T ss_pred             CcccceeEEEEecCCcEEEeecCCC--cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceee
Confidence            3444445678889999999887654  478999998876542222 3333445778888999988875 1      4699


Q ss_pred             EEECCCCeEEEEEeC----------CC-----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 005235          564 VYDLLKQRLIKKLET----------GL-----KEVSSIAIHPAGDNLIVGSREGKLCWFDMDLS  612 (707)
Q Consensus       564 iwDl~~~~~~~~l~~----------~~-----~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~  612 (707)
                      +||+.+.+-.. +..          +.     ..-..+...++|..++.|...+.+.+++..+.
T Consensus       151 ~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         151 VYSPSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             EEETTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             eecCCCCceee-cCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            99998875322 211          00     00111233456777777777777777777654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.23  E-value=2.4  Score=44.91  Aligned_cols=183  Identities=9%  Similarity=-0.018  Sum_probs=99.7

Q ss_pred             cEEEEEe-CCCcEEEEeC-CCCeEEEEEecCC-----c------E-EEEEEccCCCccEEEEEeCCeEEEEECCCCCchh
Q 005235          389 YLEYKGS-TDGTVRIWEV-ESGRCLRVLEIGE-----A------I-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNEEE  454 (707)
Q Consensus       389 ~~l~sgs-~DgtVrIWd~-~tg~~l~~l~~~~-----~------V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~~~  454 (707)
                      ..+|.++ .++.|.-.|. .||+.+.++....     .      + ..+++.. +  .++.++.++.|.-.|..++....
T Consensus        63 g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~-~--~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGA-G--QIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEET-T--EEEEECTTSEEEEEETTTCCEEE
T ss_pred             CEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeC-C--eEEEEeCCCcEEeeehhhhhhhc
Confidence            3556555 4788988897 4799998886410     0      1 2344443 3  58888889999999998886532


Q ss_pred             ccccc---ceeeeccc-------ccc------cCCCCcEEEEecCCccceEEecc-------------------------
Q 005235          455 QRRVK---DLLHVETP-------TAP------DDNMASIVSWLQHDKLDGIRLRH-------------------------  493 (707)
Q Consensus       455 ~~~~~---~v~~~~~~-------~~~------~~~d~~i~iW~~~~~~~~~~~~h-------------------------  493 (707)
                      .....   .-.....+       +..      ....+.|.-+|..++...-...+                         
T Consensus       140 ~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  219 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL  219 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred             cccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccc
Confidence            21100   00000000       111      12356788888776654321110                         


Q ss_pred             -------------CCCe-EEEEEcCCCCEEEEEeCCC-------------CccEEEEEECCCCceeeeee-ccC------
Q 005235          494 -------------FKMV-SSVEWHRRGDYLSTVMPAG-------------ESRAIFMHQLSKKLSHRIPF-KLH------  539 (707)
Q Consensus       494 -------------~~~V-~~v~~sp~g~~lat~s~dg-------------~~~~V~Iwdl~~~~~~~~~~-~~~------  539 (707)
                                   ...+ ...++.+....+..+..+.             ....+.-.|+.+++.. -.+ ...      
T Consensus       220 ~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~-W~~q~~~~D~Wd~  298 (571)
T d2ad6a1         220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK-WGYQKTPHDEWDF  298 (571)
T ss_dssp             HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE-EEEESSTTCSSCC
T ss_pred             cccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhhe-ecccccCcccccc
Confidence                         0111 2345566666655554322             1347778888888876 444 111      


Q ss_pred             ---CCeEEEEEeCCCC---EEEEEe-CCeEEEEECCCCeEEEE
Q 005235          540 ---GLPVSSVFHPTRS---IFFVST-KKNIRVYDLLKQRLIKK  575 (707)
Q Consensus       540 ---~~V~~v~fspd~~---~l~v~s-dg~I~iwDl~~~~~~~~  575 (707)
                         .......+..++.   .++.++ +|.+.++|..+++++..
T Consensus       299 D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence               1122222223443   234444 89999999999988754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.07  E-value=2.3  Score=45.00  Aligned_cols=81  Identities=14%  Similarity=0.177  Sum_probs=51.5

Q ss_pred             CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC-CEEEEEEcCCCC-E
Q 005235          560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK-DITNVAFHRSYP-L  637 (707)
Q Consensus       560 g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~-~I~~vafspdg~-l  637 (707)
                      |.|.-+|+.+++.+.+...... ..+-.+.-.|.++++|+.||.++-||..++ +.+-.++.... .-.-+.|..+|+ +
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~-~~gg~l~TagglVF~G~~dg~l~A~Da~tG-e~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH-WNGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC-CCCceeEECCCEEEEECCCCcEEEEECCCC-cEeEEEECCCCccccCEEEEECCEEE
Confidence            4678899999998887764422 211122234678889999999999999998 55555543221 111245666776 5


Q ss_pred             EEEEe
Q 005235          638 FASCS  642 (707)
Q Consensus       638 laSgs  642 (707)
                      |+..+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.04  E-value=1.7  Score=42.95  Aligned_cols=105  Identities=14%  Similarity=0.140  Sum_probs=64.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCC------------CccEEEEEECCCCceeeeeeccCCCeEEEEEeCCCCEEEEEe--C
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAG------------ESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRSIFFVST--K  559 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg------------~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fspd~~~l~v~s--d  559 (707)
                      ....+.|++..+|.+++|-....            ......+|..+..... .....-...+.++++|++++|+++.  .
T Consensus       149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~  227 (340)
T d1v04a_         149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-VVAEGFDFANGINISPDGKYVYIAELLA  227 (340)
T ss_dssp             CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE-EEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE-EEcCCCCccceeEECCCCCEEEEEeCCC
Confidence            34578899988998888732111            1113344444444443 3334456788999999999999886  7


Q ss_pred             CeEEEEECCCCe---EEEEEeCCCCCeEEEEEcCCCCEEEEEEC
Q 005235          560 KNIRVYDLLKQR---LIKKLETGLKEVSSIAIHPAGDNLIVGSR  600 (707)
Q Consensus       560 g~I~iwDl~~~~---~~~~l~~~~~~I~sl~~spdg~~L~sGs~  600 (707)
                      +.|++|++....   ....+.. ....-.+.+.+.+..+.+++.
T Consensus       228 ~~i~~y~~~~~~~l~~~~~~~l-~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         228 HKIHVYEKHANWTLTPLRVLSF-DTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEC-SSEEEEEEECTTTCCEEEEEE
T ss_pred             CeEEEEEeCCCcccceEEEecC-CCCCCccEEecCCCEEEEEEC
Confidence            999999987542   2222222 244667888764444444443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.80  E-value=2.9  Score=44.59  Aligned_cols=79  Identities=16%  Similarity=0.109  Sum_probs=49.0

Q ss_pred             CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC-CEEEEEEcCCCC-E
Q 005235          560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK-DITNVAFHRSYP-L  637 (707)
Q Consensus       560 g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~-~I~~vafspdg~-l  637 (707)
                      |.|.-||+.+++.+.+..... .+.+-.++-.|.++++|+.||.++.||..++ +.+-.+..... .-.-+.|..+|+ +
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsTagglVF~G~~Dg~l~A~Da~TG-e~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTG-DLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCCCC-CCccceeEecCCEEEEECCCCeEEEEECCCC-cEeeEEECCCCcccCCeEEEECCEEE
Confidence            467888888888876654332 1111122235778889999999999999998 55555542211 112245666786 4


Q ss_pred             EEE
Q 005235          638 FAS  640 (707)
Q Consensus       638 laS  640 (707)
                      +|.
T Consensus       531 vav  533 (596)
T d1w6sa_         531 VAI  533 (596)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.38  E-value=3.9  Score=43.26  Aligned_cols=61  Identities=15%  Similarity=0.149  Sum_probs=44.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCCeEEEEEecC---------CcE-EEEEEccCCCccEEEEEeCCeEEEEECCCCCc
Q 005235          389 YLEYKGSTDGTVRIWEVESGRCLRVLEIG---------EAI-QYVAWNPLPELPVLAVSVGQDVLILNTGLGNE  452 (707)
Q Consensus       389 ~~l~sgs~DgtVrIWd~~tg~~l~~l~~~---------~~V-~~v~~spdg~~~lla~s~d~~V~lwd~~~~~~  452 (707)
                      ..+|.++.++.|.-.|..||+.+.++...         ..+ ..+++..+   .++.++.++.+.-.|..++..
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~---~i~~~t~~~~l~alda~tG~~  139 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGD---KVFFGTLDASVVALNKNTGKV  139 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETT---EEEEEETTTEEEEEESSSCCE
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCC---ceEEecCCCeEEEecccccce
Confidence            47888899999999999999999887641         111 12333332   588888899998889888754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.37  E-value=3.1  Score=42.06  Aligned_cols=153  Identities=14%  Similarity=0.105  Sum_probs=81.7

Q ss_pred             EEEEEcCCCCEEEEEeCCC-------------CccEEEEEECCCCceeee-ee-cc--CCCeEEEEEeCCCCEEEEEe--
Q 005235          498 SSVEWHRRGDYLSTVMPAG-------------ESRAIFMHQLSKKLSHRI-PF-KL--HGLPVSSVFHPTRSIFFVST--  558 (707)
Q Consensus       498 ~~v~~sp~g~~lat~s~dg-------------~~~~V~Iwdl~~~~~~~~-~~-~~--~~~V~~v~fspd~~~l~v~s--  558 (707)
                      ..++|++++..|+....+.             ....|..|.+.+....-. .+ ..  ...+..+..++++.+++...  
T Consensus       174 ~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~  253 (430)
T d1qfma1         174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE  253 (430)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred             cceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeec
Confidence            5689999999887665331             234788999988765422 22 22  23466778899999987542  


Q ss_pred             --CCe--EEEEECCCC--------eEEEEEeCCCCCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCCCc-ceEEeec-
Q 005235          559 --KKN--IRVYDLLKQ--------RLIKKLETGLKEVSSIAIHPAGDNLIVGS---REGKLCWFDMDLSSK-PYRVLKC-  621 (707)
Q Consensus       559 --dg~--I~iwDl~~~--------~~~~~l~~~~~~I~sl~~spdg~~L~sGs---~Dg~I~vwDl~~~~~-~~~~l~~-  621 (707)
                        ...  +.+.|+...        .....+......+. ...+.++.+++...   .++.|...++..... ....+-. 
T Consensus       254 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~  332 (430)
T d1qfma1         254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE  332 (430)
T ss_dssp             SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECC
T ss_pred             cCCccEEEEEeeCCCcccccccccceeEeecccccceE-EEecCCceeecccCcccccceeEEecCCCCccccceEEecc
Confidence              233  444554421        11222222222233 22333333333332   346788888775432 2344443 


Q ss_pred             CCCCEEEEEEcCCCCEEE-EEeCCC--cEEEEe
Q 005235          622 HPKDITNVAFHRSYPLFA-SCSDDC--TAYVFH  651 (707)
Q Consensus       622 h~~~I~~vafspdg~lla-Sgs~Dg--~I~Vwd  651 (707)
                      +...+..-.++..+.+|+ +.-.++  .|++++
T Consensus       333 ~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~  365 (430)
T d1qfma1         333 HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD  365 (430)
T ss_dssp             CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred             cCcceeeeEEEEECCEEEEEEEcCCEeEEEEEE
Confidence            445555545554444444 555665  466774

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.09  E-value=3.7  Score=43.36  Aligned_cols=77  Identities=10%  Similarity=0.116  Sum_probs=49.7

Q ss_pred             eEEEEECCCCeEEEEEeCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCCC-EEEEEEcCCCC-E
Q 005235          561 NIRVYDLLKQRLIKKLETGLKEV-SSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPKD-ITNVAFHRSYP-L  637 (707)
Q Consensus       561 ~I~iwDl~~~~~~~~l~~~~~~I-~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~~-I~~vafspdg~-l  637 (707)
                      .|.-||+.+++.+.+........ ..++  -.|.+|++|+.||.++.||..++ +.+-.++..... -.-+.|..+|+ +
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~ls--tagglVF~G~~dg~l~A~Da~TG-e~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLT--TAGNVVFQGTADGRLVAYHAATG-EKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEE--ETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEE--EcCCEEEEECCCCeEEEEECCCC-cEeEEEECCCCccccCEEEEECCEEE
Confidence            57789999999888776543221 1233  35779999999999999999999 455555432211 11145666776 4


Q ss_pred             EEE
Q 005235          638 FAS  640 (707)
Q Consensus       638 laS  640 (707)
                      ++.
T Consensus       535 v~v  537 (573)
T d1kb0a2         535 VSV  537 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.05  E-value=2.1  Score=42.91  Aligned_cols=138  Identities=12%  Similarity=0.011  Sum_probs=85.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCC---------CceeeeeeccCCCeEEEEEeCCCCEEEEEeCCeEEEE
Q 005235          495 KMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK---------KLSHRIPFKLHGLPVSSVFHPTRSIFFVSTKKNIRVY  565 (707)
Q Consensus       495 ~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~---------~~~~~~~~~~~~~V~~v~fspd~~~l~v~sdg~I~iw  565 (707)
                      ....-+++++...+|++|+.++    +.|..+..         ......+-..-..|..++|+-+  .|++.+++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~----l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK----AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVSTRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE----EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE----EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEeCCCEEEE
Confidence            4566788888888888888764    56665321         1000011112236889999754  6777788889999


Q ss_pred             ECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEee-----cCCCCEEEEEEcCCCCEEEE
Q 005235          566 DLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLK-----CHPKDITNVAFHRSYPLFAS  640 (707)
Q Consensus       566 Dl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~-----~h~~~I~~vafspdg~llaS  640 (707)
                      +...-........-...+..+.++|.  .++....+|.+.++++..+. ......     .-.+.+.+++|++.|..+++
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~-~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS-TKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-EEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCc-cccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence            88764333333334456788888775  56667778999999998763 222111     11244667777777766666


Q ss_pred             E
Q 005235          641 C  641 (707)
Q Consensus       641 g  641 (707)
                      +
T Consensus       188 ~  188 (381)
T d1xipa_         188 W  188 (381)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.99  E-value=1.4  Score=43.80  Aligned_cols=188  Identities=14%  Similarity=0.223  Sum_probs=103.3

Q ss_pred             CCCEEEEEeCCCCccEEEEEECCCCceeeeeeccCCCeEEEEEe------CCCCEEEEEeC-----CeEEEEECCC-CeE
Q 005235          505 RGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFH------PTRSIFFVSTK-----KNIRVYDLLK-QRL  572 (707)
Q Consensus       505 ~g~~lat~s~dg~~~~V~Iwdl~~~~~~~~~~~~~~~V~~v~fs------pd~~~l~v~sd-----g~I~iwDl~~-~~~  572 (707)
                      ...+++.....+   .|.+||+.....+  .+ ..+.+..|..-      .....|+++++     .+|.+|.+.. ...
T Consensus        39 ~~SlI~gTdK~~---Gl~vYdL~G~~l~--~~-~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          39 QNSKLITTNKKS---GLAVYSLEGKMLH--SY-HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             GGCEEEEEETTS---CCEEEETTCCEEE--EC-CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             CccEEEEEcCcC---CEEEEcCCCcEEE--ec-ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            445666666555   7999999754433  22 23445544432      22334566652     3577887752 333


Q ss_pred             EEEEeCC-------CCCeEEEEE--cCC-CC-EEEEEECCCcEEEEECCCCC------cceEEeecCCCCEEEEEEcCCC
Q 005235          573 IKKLETG-------LKEVSSIAI--HPA-GD-NLIVGSREGKLCWFDMDLSS------KPYRVLKCHPKDITNVAFHRSY  635 (707)
Q Consensus       573 ~~~l~~~-------~~~I~sl~~--spd-g~-~L~sGs~Dg~I~vwDl~~~~------~~~~~l~~h~~~I~~vafspdg  635 (707)
                      +..+...       ...+..+|+  ++. |. ++++...+|.+..|.+....      +.++.+.. ...+..|++....
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~  191 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEY  191 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTT
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCC
Confidence            3333321       123566666  664 44 45667778988887763211      33445543 4568899999988


Q ss_pred             CEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeC-C-CCCCCCCeeEEEEc--CCCC--EEEEEeCCCcEEEEeC
Q 005235          636 PLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRG-H-TSSNGRGVMDCKFH--PRQP--WLFTAGADSVIRLYCH  707 (707)
Q Consensus       636 ~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~g-h-~~~~~~gV~~l~fs--pdg~--~L~s~g~Dg~IrlWdl  707 (707)
                      ..|..+-.+.-|..+++.    .........+....+ + ...    +-.|+.-  .++.  +|+|.-.+++..||+.
T Consensus       192 ~~LyisEE~~Giw~~~a~----~~~~~~~~~i~~~~g~~l~~D----~EGlaiy~~~~~~GylivSsQG~n~f~vydr  261 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAE----PDGGSNGTVIDRADGRHLTPD----IEGLTIYYAADGKGYLLASSQGNSSYAIYER  261 (353)
T ss_dssp             TEEEEEETTTEEEEEESS----TTSCSCCEEEEECSSSSCCSC----EEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             CcEEEecCccceEEEEec----cCCCccceeeecccCccccCC----ccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence            888888777656555432    111111111222222 2 222    6666643  2333  4566657888988873

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.55  E-value=0.62  Score=46.29  Aligned_cols=155  Identities=11%  Similarity=0.017  Sum_probs=88.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCC---------CCccEEEEEECCCCceeeeee--c-c-----CCCeEEEEE--eCCCC-EEE
Q 005235          496 MVSSVEWHRRGDYLSTVMPA---------GESRAIFMHQLSKKLSHRIPF--K-L-----HGLPVSSVF--HPTRS-IFF  555 (707)
Q Consensus       496 ~V~~v~~sp~g~~lat~s~d---------g~~~~V~Iwdl~~~~~~~~~~--~-~-----~~~V~~v~f--spd~~-~l~  555 (707)
                      ..-.++..|+|..|++++..         ...+.|.++|+.........+  . .     .-....+.+  .+++. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            34567888888777665421         013599999998765432222  1 1     112344443  34555 344


Q ss_pred             EEe----CCeEEEEECCCC--eE--EEEEeCC-CCCeEEEEEcCCCCEEEEEEC---------------CCcEEEEECCC
Q 005235          556 VST----KKNIRVYDLLKQ--RL--IKKLETG-LKEVSSIAIHPAGDNLIVGSR---------------EGKLCWFDMDL  611 (707)
Q Consensus       556 v~s----dg~I~iwDl~~~--~~--~~~l~~~-~~~I~sl~~spdg~~L~sGs~---------------Dg~I~vwDl~~  611 (707)
                      +..    ..+|.+|++...  ++  +.++... ....+.+++..+|.++++-..               -+...+|..+.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            432    467888887543  22  2233322 234788999889988887321               12233444433


Q ss_pred             CCcceEEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEec
Q 005235          612 SSKPYRVLKCHPKDITNVAFHRSYPLFA-SCSDDCTAYVFHG  652 (707)
Q Consensus       612 ~~~~~~~l~~h~~~I~~vafspdg~lla-Sgs~Dg~I~Vwd~  652 (707)
                      . . .+.+...-..-+.|+++|++++|+ +-+..+.|++|+.
T Consensus       196 ~-~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~  235 (340)
T d1v04a_         196 N-D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  235 (340)
T ss_dssp             S-C-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             C-c-eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEe
Confidence            3 2 233333345679999999998554 5556788999954

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.37  E-value=4.2  Score=40.13  Aligned_cols=203  Identities=11%  Similarity=0.121  Sum_probs=112.4

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEcc----CCCc-cEEEEEe-C---CeEEEEECCCCCchhccc
Q 005235          387 ACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNP----LPEL-PVLAVSV-G---QDVLILNTGLGNEEEQRR  457 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~~tg~~l~~l~~~~~V~~v~~sp----dg~~-~lla~s~-d---~~V~lwd~~~~~~~~~~~  457 (707)
                      ..++++.....+-|.+||+ .|+.+..+. .+.++.|..-.    ++.. .+++++. +   .+|.+|.+.....     
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~-----  111 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSL-EGKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-----  111 (353)
T ss_dssp             GGCEEEEEETTSCCEEEET-TCCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT-----
T ss_pred             CccEEEEEcCcCCEEEEcC-CCcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc-----
Confidence            3457777777777999997 588887665 35666665442    2211 2344442 1   3566776532211     


Q ss_pred             ccceeeecccccccCCCCcEEEEecCCccceEEeccCCCeEEEEE--cCC-CCEE-EEEeCCCCccEEEEEECC---CCc
Q 005235          458 VKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEW--HRR-GDYL-STVMPAGESRAIFMHQLS---KKL  530 (707)
Q Consensus       458 ~~~v~~~~~~~~~~~~d~~i~iW~~~~~~~~~~~~h~~~V~~v~~--sp~-g~~l-at~s~dg~~~~V~Iwdl~---~~~  530 (707)
                                        .+..+.....   ....-...+..+|+  ++. |.+. ++....|   .+..|.+.   .+.
T Consensus       112 ------------------~l~~~~~~~~---p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G---~v~q~~l~~~~~g~  167 (353)
T d1h6la_         112 ------------------TLQSITDPNR---PIASAIDEVYGFSLYHSQKTGKYYAMVTGKEG---EFEQYELNADKNGY  167 (353)
T ss_dssp             ------------------EEEECSCSSS---CEECSSSSCCCEEEEECTTTCCEEEEEECSSS---EEEEEEEEECTTSS
T ss_pred             ------------------cccccccccc---ccccccCcceEEEEEecCCCCeEEEEEEcCCc---eEEEEEEEcCCCCc
Confidence                              1111100000   01111234566666  554 5544 4444444   77777663   222


Q ss_pred             ee---eeeeccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCC-----CeEEEEEeC--CCCCeEEEEEcC--CCC-EEE
Q 005235          531 SH---RIPFKLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLK-----QRLIKKLET--GLKEVSSIAIHP--AGD-NLI  596 (707)
Q Consensus       531 ~~---~~~~~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~-----~~~~~~l~~--~~~~I~sl~~sp--dg~-~L~  596 (707)
                      ..   .+.|.....+..+++......|+++- +..|..|++..     ...+....+  -...+-.|++-.  ++. +|+
T Consensus       168 v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~Gyli  247 (353)
T d1h6la_         168 ISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLL  247 (353)
T ss_dssp             EEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEE
T ss_pred             eeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEE
Confidence            21   14456677899999999999999998 66677777642     233333222  234577777643  333 555


Q ss_pred             EEE-CCCcEEEEECCCCCcceEEee
Q 005235          597 VGS-REGKLCWFDMDLSSKPYRVLK  620 (707)
Q Consensus       597 sGs-~Dg~I~vwDl~~~~~~~~~l~  620 (707)
                      +.+ .+++..|||.......+..|+
T Consensus       248 vSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         248 ASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEcCCCCeEEEEecCCCccccceEE
Confidence            544 467899999976545555554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.70  E-value=3.6  Score=42.06  Aligned_cols=107  Identities=11%  Similarity=0.207  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEEeCCCCEEEEEe-CCeEEEEECCCCeEEE--EEe------CCCCCeEEEEEcCC---CCEEEE-EEC---
Q 005235          537 KLHGLPVSSVFHPTRSIFFVST-KKNIRVYDLLKQRLIK--KLE------TGLKEVSSIAIHPA---GDNLIV-GSR---  600 (707)
Q Consensus       537 ~~~~~V~~v~fspd~~~l~v~s-dg~I~iwDl~~~~~~~--~l~------~~~~~I~sl~~spd---g~~L~s-Gs~---  600 (707)
                      ..-...++|+|.|++.+|++-- .|.|++++..++....  .+.      ........|+|||+   ..+|.+ .+.   
T Consensus        24 ~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~  103 (450)
T d1crua_          24 SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (450)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCC
Confidence            3345778999999999888875 7999999987764432  221      12355789999995   234433 221   


Q ss_pred             ---C----C--cEEEEECCCCCcc-------eEEee-cCCCCEEEEEEcCCCCEEEEEeC
Q 005235          601 ---E----G--KLCWFDMDLSSKP-------YRVLK-CHPKDITNVAFHRSYPLFASCSD  643 (707)
Q Consensus       601 ---D----g--~I~vwDl~~~~~~-------~~~l~-~h~~~I~~vafspdg~llaSgs~  643 (707)
                         +    .  .+..+........       +..+. ........++|.|+|.++++.++
T Consensus       104 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence               1    1  1333333322111       11111 11234578999999998887765

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.72  E-value=3.7  Score=40.94  Aligned_cols=143  Identities=12%  Similarity=0.112  Sum_probs=87.9

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCeEEEEECCC-----------CeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 005235          540 GLPVSSVFHPTRSIFFVSTKKNIRVYDLLK-----------QRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFD  608 (707)
Q Consensus       540 ~~V~~v~fspd~~~l~v~sdg~I~iwDl~~-----------~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwD  608 (707)
                      ....-++.++...+|++|+...+.|..+..           ........  ...|..++|+  ++.|++. .++.+..++
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs--~d~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFH--GDQVLVS-TRNALYSLD  111 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEE--TTEEEEE-ESSEEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEee--CCEEEEE-eCCCEEEEE
Confidence            345678888888888888866777876421           11111222  2358899997  4466665 456788888


Q ss_pred             CCCCCcceEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccCCCCCCcccceEEeeCCCCCCCCCeeEEEEcC
Q 005235          609 MDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHP  688 (707)
Q Consensus       609 l~~~~~~~~~l~~h~~~I~~vafspdg~llaSgs~Dg~I~Vwd~~~~~Dl~~~~~~~pl~~l~gh~~~~~~gV~~l~fsp  688 (707)
                      ...- ........-..++.++.++|.  .++....+|.+.++++.   +....+....+..+.-.     .++.+++|++
T Consensus       112 ~~~l-~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~---~~~~~~~~~~v~~~~~~-----~~~~~v~ws~  180 (381)
T d1xipa_         112 LEEL-SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLR---TKSTKQLAQNVTSFDVT-----NSQLAVLLKD  180 (381)
T ss_dssp             SSST-TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETT---TCCEEEEEESEEEEEEC-----SSEEEEEETT
T ss_pred             eecc-ccccccccccccccceecCCc--eeEEEecCCCEEEEEec---cCccccccCCcceEEec-----CCceEEEEeC
Confidence            8754 233444444567888888774  56677788999998654   22111111111111111     2389999999


Q ss_pred             CCCEEEEEeC
Q 005235          689 RQPWLFTAGA  698 (707)
Q Consensus       689 dg~~L~s~g~  698 (707)
                      .|..++++..
T Consensus       181 kgkq~v~~~g  190 (381)
T d1xipa_         181 RSFQSFAWRN  190 (381)
T ss_dssp             SCEEEEEEET
T ss_pred             CcEEEEEeCC
Confidence            9998888753

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.69  E-value=3.6  Score=42.07  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=41.5

Q ss_pred             EEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cceEEee------cCCCCEEEEEEcCC
Q 005235          574 KKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS-KPYRVLK------CHPKDITNVAFHRS  634 (707)
Q Consensus       574 ~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~-~~~~~l~------~h~~~I~~vafspd  634 (707)
                      ..+..+-....+|+|.|+|++|++--..|+|++++...+. +.+..+.      .-......|+|||+
T Consensus        20 ~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          20 KVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             EEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3344445678899999999988876557999999877653 1112211      11356789999996

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=83.56  E-value=14  Score=32.69  Aligned_cols=140  Identities=12%  Similarity=0.066  Sum_probs=84.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCCccEEEEEECCCCceee-----eeecc--CCCeEEEEEeCCCCEEEEEeCCeEEEEE
Q 005235          494 FKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHR-----IPFKL--HGLPVSSVFHPTRSIFFVSTKKNIRVYD  566 (707)
Q Consensus       494 ~~~V~~v~~sp~g~~lat~s~dg~~~~V~Iwdl~~~~~~~-----~~~~~--~~~V~~v~fspd~~~l~v~sdg~I~iwD  566 (707)
                      -..+.-|+|||+|.+.++...     .+..=.+.+...+.     ..++.  =.....+-|+|.|-+.+|. ++.++-=.
T Consensus        39 ~~n~~~i~fsP~G~LyaVr~~-----~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt-~~~LYr~~  112 (235)
T d1tl2a_          39 WSNFKFLFLSPGGELYGVLND-----KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS-KDKLYKAS  112 (235)
T ss_dssp             CTTCSEEEECTTSCEEEEETT-----EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE-TTEEEEES
T ss_pred             ccceeEEEECCCCcEEEEECC-----eEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec-CcceecCC
Confidence            456788999999998887653     66666655544331     11211  1245578899999877776 56443322


Q ss_pred             CCCC-------eEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCC------cceEEeecCCCCEEEEEEcC
Q 005235          567 LLKQ-------RLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSS------KPYRVLKCHPKDITNVAFHR  633 (707)
Q Consensus       567 l~~~-------~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~------~~~~~l~~h~~~I~~vafsp  633 (707)
                      .-+.       .....=...-+.+..|-|+|+|.+.++ ..+ .+.-+....+.      ...+.-++|-....-+.|+|
T Consensus       113 pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV-~~~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~  190 (235)
T d1tl2a_         113 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV-HGQ-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  190 (235)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE-ETT-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             cCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEE-ECC-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECC
Confidence            2221       111112233345889999999988887 334 46666543321      11122246666778899999


Q ss_pred             CCCEEEEE
Q 005235          634 SYPLFASC  641 (707)
Q Consensus       634 dg~llaSg  641 (707)
                      +|.+.++-
T Consensus       191 dG~L~~v~  198 (235)
T d1tl2a_         191 VGTLFGVQ  198 (235)
T ss_dssp             TSCEEEEE
T ss_pred             CCcEEEEe
Confidence            99988774

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.14  E-value=35  Score=35.50  Aligned_cols=189  Identities=9%  Similarity=-0.022  Sum_probs=101.5

Q ss_pred             CCcEEEEEeCCCcEEEEeC-CCCeEEEEEecC-----------CcE-EEEEEccCC---CccEEEEEeCCeEEEEECCCC
Q 005235          387 ACYLEYKGSTDGTVRIWEV-ESGRCLRVLEIG-----------EAI-QYVAWNPLP---ELPVLAVSVGQDVLILNTGLG  450 (707)
Q Consensus       387 ~~~~l~sgs~DgtVrIWd~-~tg~~l~~l~~~-----------~~V-~~v~~spdg---~~~lla~s~d~~V~lwd~~~~  450 (707)
                      ++.+.++++..+.|...|. .||+.+..+...           ..+ ..|++.++.   ...++.++.++.|.-.|..++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            3333444555677888887 589999888641           111 345554432   124777888999999999888


Q ss_pred             Cchhcccccc---eeeeccc-------cccc------CCCCcEEEEecCCccceEEecc---------------------
Q 005235          451 NEEEQRRVKD---LLHVETP-------TAPD------DNMASIVSWLQHDKLDGIRLRH---------------------  493 (707)
Q Consensus       451 ~~~~~~~~~~---v~~~~~~-------~~~~------~~d~~i~iW~~~~~~~~~~~~h---------------------  493 (707)
                      ..........   ...+..+       +..+      ...|.|.-+|..++...-....                     
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g  221 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccc
Confidence            6533221100   0000000       2222      2357788888776655321100                     


Q ss_pred             -----------------CC-CeEEEEEcCCCCEEEEEeCCC-------------CccEEEEEECCCCceeeeee---ccC
Q 005235          494 -----------------FK-MVSSVEWHRRGDYLSTVMPAG-------------ESRAIFMHQLSKKLSHRIPF---KLH  539 (707)
Q Consensus       494 -----------------~~-~V~~v~~sp~g~~lat~s~dg-------------~~~~V~Iwdl~~~~~~~~~~---~~~  539 (707)
                                       .. .-..+++.+....+..+..+.             ....|.-.|+.+++.. -.|   .|.
T Consensus       222 ~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~-W~~Q~~~~D  300 (596)
T d1w6sa_         222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK-FGYQKTPHD  300 (596)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE-EEEESSTTC
T ss_pred             ccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccc-ccccceecc
Confidence                             00 112345556666555553332             1346888899988876 444   221


Q ss_pred             -------CCeEEEEE-eCCCC---EEEEEe-CCeEEEEECCCCeEEEEE
Q 005235          540 -------GLPVSSVF-HPTRS---IFFVST-KKNIRVYDLLKQRLIKKL  576 (707)
Q Consensus       540 -------~~V~~v~f-spd~~---~l~v~s-dg~I~iwDl~~~~~~~~l  576 (707)
                             ..+..+.. ..+++   .++.++ +|.+.++|..+++++...
T Consensus       301 ~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         301 EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             SSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence                   11222221 23443   455555 799999999999887543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.03  E-value=1.9  Score=45.95  Aligned_cols=80  Identities=13%  Similarity=0.194  Sum_probs=54.0

Q ss_pred             CeEEEEECCCCeEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcceEEeecCCC-CEEEEEEcCCCC-E
Q 005235          560 KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPYRVLKCHPK-DITNVAFHRSYP-L  637 (707)
Q Consensus       560 g~I~iwDl~~~~~~~~l~~~~~~I~sl~~spdg~~L~sGs~Dg~I~vwDl~~~~~~~~~l~~h~~-~I~~vafspdg~-l  637 (707)
                      |.|.-+|+.+++.+.+...+. ++.+-.++-.|.+|++|+.||.++-||..++ +.+-.++.... .-.-+.|..+|+ +
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TG-e~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCC-cEeEEEECCCCccccCEEEEECCEEE
Confidence            789999999999988877553 2222223345778889999999999999999 55555543221 112256777886 4


Q ss_pred             EEEE
Q 005235          638 FASC  641 (707)
Q Consensus       638 laSg  641 (707)
                      +|..
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443