Citrus Sinensis ID: 005331
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 702 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LL84 | 1219 | DNA ligase 4 OS=Arabidops | yes | no | 0.990 | 0.570 | 0.821 | 0.0 | |
| Q7X7E9 | 1322 | Putative DNA ligase 4 OS= | yes | no | 0.893 | 0.474 | 0.607 | 0.0 | |
| Q5R6L3 | 911 | DNA ligase 4 OS=Pongo abe | yes | no | 0.935 | 0.721 | 0.346 | 1e-107 | |
| P49917 | 911 | DNA ligase 4 OS=Homo sapi | yes | no | 0.935 | 0.721 | 0.345 | 1e-107 | |
| Q90YB1 | 912 | DNA ligase 4 OS=Gallus ga | yes | no | 0.934 | 0.719 | 0.348 | 1e-105 | |
| Q8BTF7 | 911 | DNA ligase 4 OS=Mus muscu | yes | no | 0.935 | 0.721 | 0.342 | 1e-104 | |
| Q54CR9 | 1088 | DNA ligase 4 OS=Dictyoste | yes | no | 0.927 | 0.598 | 0.327 | 1e-102 | |
| A8N936 | 1025 | DNA ligase 4 OS=Coprinops | N/A | no | 0.924 | 0.633 | 0.328 | 4e-85 | |
| Q7Z7W5 | 1025 | DNA ligase 4 OS=Coprinops | N/A | no | 0.924 | 0.633 | 0.328 | 5e-85 | |
| Q2U6A1 | 1006 | DNA ligase 4 OS=Aspergill | yes | no | 0.927 | 0.647 | 0.309 | 1e-84 |
| >sp|Q9LL84|DNLI4_ARATH DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1187 bits (3070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/700 (82%), Positives = 640/700 (91%), Gaps = 5/700 (0%)
Query: 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSY 63
TEE + VLVSLFNWIQK+K +++KRSKFRKFLDTYC DYF A+RLI+PSLDRERGSY
Sbjct: 2 TEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGSY 61
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGG---AAPNAGNFPMVAAEVLQRRQGMI 120
GLKESVLA CLIDALG+S+D+ DAVRL+NWRKGG A NAGNF ++AAEVLQRRQGM
Sbjct: 62 GLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMA 121
Query: 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
SGGLTIKELNDLLDRLASSENRAEK VLSTLI+KTNAQEMKW+I IILKDLKLG+SEKS
Sbjct: 122 SGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKS 181
Query: 181 IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR 240
IF EFHPDAEDLFNVTCDLKLVCEKL+DR+QRHKRQDIEVGKAVRPQLAMRIGD +AAW+
Sbjct: 182 IFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWK 241
Query: 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD 300
KLHGK+VV ECKFDGDRIQIHKNG++IHYFSR+FLDHSEY HAMS +I QN+LVD+CILD
Sbjct: 242 KLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILD 301
Query: 301 GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERH 360
GEMLVWDTSLNRFAEFGSNQEIAKAAR+GL S +QLCY AFDVLYVGDTSVIHQSLKERH
Sbjct: 302 GEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQLCYVAFDVLYVGDTSVIHQSLKERH 361
Query: 361 ELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGI 420
ELL+KVVKP KGRLE LVP+ GLN H RP GEP WS+V H +VE+FFKET+ENRDEGI
Sbjct: 362 ELLKKVVKPLKGRLEVLVPEGGLNVH-RPSGEPSWSIVVHAAADVERFFKETVENRDEGI 420
Query: 421 VLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAER 480
VLKDL SKWEPGDRSGKW+KLKPEYIRAG+DLDVLIIGGYYGSGRRGGEVAQFLVALA+R
Sbjct: 421 VLKDLESKWEPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADR 480
Query: 481 PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERP 540
+ YPRRF+SFCRVGTGLSD+EL+ VV+KLKPYFRK E+PK+APPSFYQVTN+SKERP
Sbjct: 481 AEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP 540
Query: 541 DVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 600
DVWI+SPEKSIILSITSDIRTIRSEVF APYSLRFPRID+VRYDKPWH+CLDVQ+FVELV
Sbjct: 541 DVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV 600
Query: 601 HSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDM 660
+SSNGTTQK KE QD+ PK +SS++GEKKNVS+VPS F+QTDVSDIKG+TSIFS+M
Sbjct: 601 NSSNGTTQKQKESESTQDN-PKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNM 659
Query: 661 VFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA 700
+FYFVNVP ++SL++ HKMVVENGG FSMNLNNSVTHC+A
Sbjct: 660 IFYFVNVPRSHSLETFHKMVVENGGKFSMNLNNSVTHCIA 699
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Efficiently joins single-strand breaks in a double-stranded polydeoxynucleotide in an ATP-dependent reaction. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break repair. May be involved for T-DNA integration even if not absolutely required. Seems to be dispensable under normal growth conditions. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 5EC: .EC: 1EC: .EC: 1 |
| >sp|Q7X7E9|DNLI4_ORYSJ Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5R6L3|DNLI4_PONAB DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1 | Back alignment and function description |
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| >sp|P49917|DNLI4_HUMAN DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q90YB1|DNLI4_CHICK DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8BTF7|DNLI4_MOUSE DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q54CR9|DNLI4_DICDI DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 PE=3 SV=1 | Back alignment and function description |
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| >sp|A8N936|DNLI4_COPC7 DNA ligase 4 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=LIG4 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q7Z7W5|DNLI4_COPCI DNA ligase 4 OS=Coprinopsis cinerea GN=LIG4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q2U6A1|DNLI4_ASPOR DNA ligase 4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=lig4 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 702 | ||||||
| 224144326 | 1242 | predicted protein [Populus trichocarpa] | 0.991 | 0.560 | 0.834 | 0.0 | |
| 225445943 | 1162 | PREDICTED: DNA ligase 4-like [Vitis vini | 0.990 | 0.598 | 0.835 | 0.0 | |
| 112732548 | 1319 | DNA ligase IV [Populus nigra] | 0.990 | 0.526 | 0.829 | 0.0 | |
| 297735473 | 1163 | unnamed protein product [Vitis vinifera] | 0.990 | 0.597 | 0.832 | 0.0 | |
| 30696835 | 1219 | DNA ligase 4 [Arabidopsis thaliana] gi|7 | 0.990 | 0.570 | 0.821 | 0.0 | |
| 356556242 | 1171 | PREDICTED: DNA ligase 4-like [Glycine ma | 0.991 | 0.594 | 0.814 | 0.0 | |
| 297796605 | 1221 | ATLIG4 [Arabidopsis lyrata subsp. lyrata | 0.990 | 0.569 | 0.816 | 0.0 | |
| 357449599 | 1244 | DNA ligase [Medicago truncatula] gi|3554 | 0.988 | 0.557 | 0.763 | 0.0 | |
| 449463583 | 1214 | PREDICTED: DNA ligase 4-like [Cucumis sa | 0.988 | 0.571 | 0.799 | 0.0 | |
| 255573570 | 850 | DNA ligase IV, putative [Ricinus communi | 0.952 | 0.787 | 0.794 | 0.0 |
| >gi|224144326|ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|222866696|gb|EEF03827.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1204 bits (3114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/700 (83%), Positives = 641/700 (91%), Gaps = 4/700 (0%)
Query: 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSY 63
T T+ +LVSLFNWI KTK +++KRSKFRKF+DT+C DYFSA+RLILP+LDRERG+Y
Sbjct: 10 TAHTKFSILVSLFNWISKTKTSSRKRSKFRKFIDTFCSPSDYFSAVRLILPNLDRERGTY 69
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGGA---APNAGNFPMVAAEVLQRRQGMI 120
GLKESVLA LI+ALGMS+DS DA++LINWRKGGA NAGNF +VAAEVLQRRQG +
Sbjct: 70 GLKESVLAVSLIEALGMSRDSPDALKLINWRKGGANATGANAGNFSLVAAEVLQRRQGTV 129
Query: 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
SGGLTI+ELN LLD+LASSENR EK +VL+ LI KTN QEMKWIIMIILKDLKLG+SEKS
Sbjct: 130 SGGLTIEELNGLLDKLASSENRGEKTAVLAALINKTNTQEMKWIIMIILKDLKLGMSEKS 189
Query: 181 IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR 240
+FHEFHPDAEDLFNVTCDLKLVCEKL+DRNQRHKRQDIEVGKAVRPQLAMR+ DAHAAW+
Sbjct: 190 VFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAMRVSDAHAAWK 249
Query: 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD 300
KLHGKEVV+ECKFDGDRIQIHKNG+E+HYFSR+FLDHSEY H MS II QNVL +RCILD
Sbjct: 250 KLHGKEVVVECKFDGDRIQIHKNGAEVHYFSRNFLDHSEYAHGMSDIIVQNVLDERCILD 309
Query: 301 GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERH 360
GEMLVWDTSLNRFAEFGSNQEIAKAARDGL SDRQLCY AFD+LYVGDTSVIHQ+LKERH
Sbjct: 310 GEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQTLKERH 369
Query: 361 ELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGI 420
ELL+KVVKP KGRLE LVP+ GLN+H P GEP SL+A+NVD++EKFFKETIENRDEGI
Sbjct: 370 ELLRKVVKPVKGRLEILVPNGGLNAHRLP-GEPYCSLIAYNVDDIEKFFKETIENRDEGI 428
Query: 421 VLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAER 480
VLKDLGSKWEP DRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFL+ LAER
Sbjct: 429 VLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLLGLAER 488
Query: 481 PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERP 540
PA +TYPRRFISFCRVG GLSDEELD VV+KLKPYFRK EYPK +PPSFYQVTNNSKERP
Sbjct: 489 PASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKNEYPKNSPPSFYQVTNNSKERP 548
Query: 541 DVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 600
DVWIE+P+KSIILSITSDIRTI SEVFSAPYSLRFPRIDRVRYDKPWH+CLDVQSFVELV
Sbjct: 549 DVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRYDKPWHECLDVQSFVELV 608
Query: 601 HSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDM 660
HSSNGTTQKGK YG +QD KP +SSRKGEKK+VS+VPSH +QTD+SDIKGET IFS+M
Sbjct: 609 HSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDISDIKGETLIFSNM 668
Query: 661 VFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA 700
+FYFVNVPP+ SL+SLHKMV ENGGTFSMNLNNSVTHC+A
Sbjct: 669 MFYFVNVPPSNSLESLHKMVAENGGTFSMNLNNSVTHCIA 708
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445943|ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|112732548|dbj|BAF03051.1| DNA ligase IV [Populus nigra] | Back alignment and taxonomy information |
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| >gi|297735473|emb|CBI17913.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|30696835|ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana] gi|75174554|sp|Q9LL84.1|DNLI4_ARATH RecName: Full=DNA ligase 4; AltName: Full=DNA ligase IV; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 4 gi|9651815|gb|AAF91284.1|AF233527_1 DNA ligase IV [Arabidopsis thaliana] gi|332009474|gb|AED96857.1| DNA ligase 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356556242|ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297796605|ref|XP_002866187.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] gi|297312022|gb|EFH42446.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|357449599|ref|XP_003595076.1| DNA ligase [Medicago truncatula] gi|355484124|gb|AES65327.1| DNA ligase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449463583|ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255573570|ref|XP_002527709.1| DNA ligase IV, putative [Ricinus communis] gi|223532899|gb|EEF34668.1| DNA ligase IV, putative [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 702 | ||||||
| TAIR|locus:2175544 | 1219 | ATLIG4 [Arabidopsis thaliana ( | 0.990 | 0.570 | 0.805 | 4.2e-308 | |
| DICTYBASE|DDB_G0292760 | 1088 | lig4 "BRCT domain-containing p | 0.639 | 0.412 | 0.310 | 8.5e-93 | |
| UNIPROTKB|Q5R6L3 | 911 | DNL4 "DNA ligase 4" [Pongo abe | 0.851 | 0.656 | 0.348 | 5.9e-89 | |
| UNIPROTKB|P49917 | 911 | LIG4 "DNA ligase 4" [Homo sapi | 0.851 | 0.656 | 0.346 | 2e-88 | |
| UNIPROTKB|F1RLP1 | 910 | LIG4 "DNA ligase" [Sus scrofa | 0.843 | 0.650 | 0.343 | 4.3e-86 | |
| UNIPROTKB|E2R0G7 | 911 | LIG4 "DNA ligase" [Canis lupus | 0.850 | 0.655 | 0.343 | 6.9e-86 | |
| UNIPROTKB|F1MB07 | 911 | LIG4 "DNA ligase" [Bos taurus | 0.850 | 0.655 | 0.343 | 1.8e-85 | |
| RGD|1304639 | 911 | Lig4 "ligase IV, DNA, ATP-depe | 0.851 | 0.656 | 0.334 | 4.4e-84 | |
| UNIPROTKB|Q90YB1 | 912 | LIG4 "DNA ligase 4" [Gallus ga | 0.699 | 0.538 | 0.361 | 9e-77 | |
| UNIPROTKB|F1P275 | 912 | LIG4 "DNA ligase" [Gallus gall | 0.699 | 0.538 | 0.361 | 1.1e-76 |
| TAIR|locus:2175544 ATLIG4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2956 (1045.6 bits), Expect = 4.2e-308, P = 4.2e-308
Identities = 564/700 (80%), Positives = 629/700 (89%)
Query: 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDSVDYFSALRLILPSLDRERGSY 63
TEE + VLVSLFNWIQK+K +++KRSKFRKFLDTYC DYF A+RLI+PSLDRERGSY
Sbjct: 2 TEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGSY 61
Query: 64 GLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAP---NAGNFPMVAAEVLQRRQGMI 120
GLKESVLA CLIDALG+S+D+ DAVRL+NWRKGG A NAGNF ++AAEVLQRRQGM
Sbjct: 62 GLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMA 121
Query: 121 SGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS 180
SGGLTIKELNDLLDRLASSENRAEK VLSTLI+KTNAQEMKW+I IILKDLKLG+SEKS
Sbjct: 122 SGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKS 181
Query: 181 IFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAMRIGDAHAAWR 240
IF EFHPDAEDLFNVTCDLKLVCEKL+DR+QRHKRQDIEVGKAVRPQLAMRIGD +AAW+
Sbjct: 182 IFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWK 241
Query: 241 KLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYGHAMSKIIEQNVLVDRCILD 300
KLHGK+VV ECKFDGDRIQIHKNG++IHYFSR+FLDHSEY HAMS +I QN+LVD+CILD
Sbjct: 242 KLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILD 301
Query: 301 GEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERH 360
GEMLVWDTSLNRFAEFGSNQEIAKAAR+GL S +QLCY AFDVLYVGDTSVIHQSLKERH
Sbjct: 302 GEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQLCYVAFDVLYVGDTSVIHQSLKERH 361
Query: 361 ELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGI 420
ELL+KVVKP KGRLE LVP+ GLN H RP GEP WS+V H +VE+FFKET+ENRDEGI
Sbjct: 362 ELLKKVVKPLKGRLEVLVPEGGLNVH-RPSGEPSWSIVVHAAADVERFFKETVENRDEGI 420
Query: 421 VLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIXXXXXXXXXXXEVAQFLVALAER 480
VLKDL SKWEPGDRSGKW+KLKPEYIRAG+DLDVLII EVAQFLVALA+R
Sbjct: 421 VLKDLESKWEPGDRSGKWMKLKPEYIRAGADLDVLIIGGYYGSGRRGGEVAQFLVALADR 480
Query: 481 PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERP 540
+ YPRRF+SFCRVGTGLSD+EL+ VV+KLKPYFRK E+PK+APPSFYQVTN+SKERP
Sbjct: 481 AEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP 540
Query: 541 DVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV 600
DVWI+SPEKSIILSITSDIRTIRSEVF APYSLRFPRID+VRYDKPWH+CLDVQ+FVELV
Sbjct: 541 DVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV 600
Query: 601 HSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDM 660
+SSNGTTQK KE QD+ PK +SS++GEKKNVS+VPS F+QTDVSDIKG+TSIFS+M
Sbjct: 601 NSSNGTTQKQKESESTQDN-PKVNKSSKRGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNM 659
Query: 661 VFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA 700
+FYFVNVP ++SL++ HKMVVENGG FSMNLNNSVTHC+A
Sbjct: 660 IFYFVNVPRSHSLETFHKMVVENGGKFSMNLNNSVTHCIA 699
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| DICTYBASE|DDB_G0292760 lig4 "BRCT domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5R6L3 DNL4 "DNA ligase 4" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P49917 LIG4 "DNA ligase 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RLP1 LIG4 "DNA ligase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R0G7 LIG4 "DNA ligase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MB07 LIG4 "DNA ligase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| RGD|1304639 Lig4 "ligase IV, DNA, ATP-dependent" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q90YB1 LIG4 "DNA ligase 4" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P275 LIG4 "DNA ligase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LL84 | DNLI4_ARATH | 6, ., 5, ., 1, ., 1 | 0.8214 | 0.9900 | 0.5701 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.5.1.1 | 0.914 |
| 3rd Layer | 6.5.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 702 | |||
| TIGR00574 | 514 | TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1 | 1e-105 | |
| cd07903 | 225 | cd07903, Adenylation_DNA_ligase_IV, Adenylation do | 4e-82 | |
| PRK01109 | 590 | PRK01109, PRK01109, ATP-dependent DNA ligase; Prov | 1e-62 | |
| cd07968 | 140 | cd07968, OBF_DNA_ligase_IV, The Oligonucleotide/ol | 1e-55 | |
| COG1793 | 444 | COG1793, CDC9, ATP-dependent DNA ligase [DNA repli | 5e-53 | |
| pfam01068 | 195 | pfam01068, DNA_ligase_A_M, ATP dependent DNA ligas | 7e-41 | |
| cd07901 | 207 | cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenyla | 6e-39 | |
| cd07900 | 219 | cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation | 2e-36 | |
| cd07898 | 201 | cd07898, Adenylation_DNA_ligase, Adenylation domai | 3e-36 | |
| pfam04675 | 177 | pfam04675, DNA_ligase_A_N, DNA ligase N terminus | 4e-33 | |
| PLN03113 | 744 | PLN03113, PLN03113, DNA ligase 1; Provisional | 1e-31 | |
| PRK03180 | 508 | PRK03180, ligB, ATP-dependent DNA ligase; Reviewed | 1e-31 | |
| cd07906 | 190 | cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenyla | 1e-28 | |
| cd07902 | 213 | cd07902, Adenylation_DNA_ligase_III, Adenylation d | 1e-26 | |
| cd07893 | 129 | cd07893, OBF_DNA_ligase, The Oligonucleotide/oligo | 7e-26 | |
| TIGR02779 | 298 | TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, l | 1e-24 | |
| PRK09632 | 764 | PRK09632, PRK09632, ATP-dependent DNA ligase; Revi | 5e-20 | |
| cd08039 | 235 | cd08039, Adenylation_DNA_ligase_Fungal, Adenylatio | 2e-19 | |
| cd07969 | 144 | cd07969, OBF_DNA_ligase_I, The Oligonucleotide/oli | 3e-19 | |
| TIGR02776 | 552 | TIGR02776, NHEJ_ligase_prk, DNA ligase D | 2e-15 | |
| PRK05972 | 860 | PRK05972, ligD, ATP-dependent DNA ligase; Reviewed | 1e-14 | |
| cd07967 | 139 | cd07967, OBF_DNA_ligase_III, The Oligonucleotide/o | 7e-14 | |
| pfam04679 | 95 | pfam04679, DNA_ligase_A_C, ATP dependent DNA ligas | 1e-13 | |
| cd07972 | 122 | cd07972, OBF_DNA_ligase_Arch_LigB, The Oligonucleo | 1e-13 | |
| cd07905 | 194 | cd07905, Adenylation_DNA_ligase_LigC, Adenylation | 6e-12 | |
| cd06846 | 182 | cd06846, Adenylation_DNA_ligase_like, Adenylation | 8e-12 | |
| PRK07636 | 275 | PRK07636, ligB, ATP-dependent DNA ligase; Reviewed | 3e-11 | |
| PHA02587 | 488 | PHA02587, 30, DNA ligase; Provisional | 1e-10 | |
| PRK09633 | 610 | PRK09633, ligD, ATP-dependent DNA ligase; Reviewed | 2e-10 | |
| TIGR04120 | 526 | TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent | 6e-10 | |
| cd07897 | 207 | cd07897, Adenylation_DNA_ligase_Bac1, Adenylation | 3e-09 | |
| PRK09125 | 282 | PRK09125, PRK09125, DNA ligase; Provisional | 7e-09 | |
| PRK09247 | 539 | PRK09247, PRK09247, ATP-dependent DNA ligase; Vali | 2e-08 | |
| cd07896 | 174 | cd07896, Adenylation_kDNA_ligase_like, Adenylation | 6e-08 | |
| cd08040 | 108 | cd08040, OBF_DNA_ligase_family, The Oligonucleotid | 2e-06 | |
| smart00292 | 78 | smart00292, BRCT, breast cancer carboxy-terminal d | 2e-04 | |
| cd07971 | 115 | cd07971, OBF_DNA_ligase_LigD, The Oligonucleotide/ | 3e-04 | |
| pfam00533 | 77 | pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | 6e-04 | |
| pfam04675 | 177 | pfam04675, DNA_ligase_A_N, DNA ligase N terminus | 0.002 | |
| cd00027 | 72 | cd00027, BRCT, Breast Cancer Suppressor Protein (B | 0.002 | |
| pfam12738 | 63 | pfam12738, PTCB-BRCT, twin BRCT domain | 0.004 |
| >gnl|CDD|233029 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1) | Back alignment and domain information |
|---|
Score = 329 bits (845), Expect = e-105
Identities = 175/558 (31%), Positives = 267/558 (47%), Gaps = 66/558 (11%)
Query: 63 YGLKESVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMIS- 121
YG+ E +L + LG+ KD + L + G E L +Q S
Sbjct: 2 YGIGEKLLIKAISSILGIPKDEIEEKVLEDGDLG-----------EVIEGLFSKQKQTSF 50
Query: 122 --GGLTIKELNDLLDRLASSE---NRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGI 176
LT+KE+ ++L +A ++ +KI +L +L+K+ E K++I +IL DL++GI
Sbjct: 51 FPAPLTVKEVYEVLKFIARLSGEGSQDKKIKLLKSLLKRATPLEAKYLIRLILGDLRIGI 110
Query: 177 SEKSIFHEFH-------PDAEDLFNVTCDLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQ 227
+EK+I PD E FN+T DL V + L + R +D I++G +P
Sbjct: 111 AEKTILDALAKAFLLSPPDVERAFNLTNDLGKVAKILLEEGLRGLDKDLSIQLGIPFKPM 170
Query: 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSK 286
LA R A +K +E K+DG+R+Q+HK+G + FSR +++ Y ++
Sbjct: 171 LAERAKSIEEALKKKGNG-FYVEYKYDGERVQVHKDGDKFKIFSRRLENYTYAYPEIFTE 229
Query: 287 -IIEQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIA-KAARDGLSSDRQLCYFAFDVL 344
I E + CILDGEM+ D + F + K + +C F FD+L
Sbjct: 230 FIKEAFPGIKSCILDGEMVAIDPETGKPLPFQTLLRRKRKYDIKAMEQKVPVCLFVFDIL 289
Query: 345 YVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDE 404
Y+ S+I + L ER E+L+ ++KP R+E + + NV+E
Sbjct: 290 YLNGESLIDEPLIERREILESILKPIPNRIE-IAE----------------MKIVSNVEE 332
Query: 405 VEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGS 463
+EKF E I EG++LKDL S +EPG R WLK+KPEY+ G LD+++IG YYG
Sbjct: 333 LEKFLNEAISEGCEGLMLKDLKSIYEPGKRGWLWLKVKPEYLEGMGDTLDLVVIGAYYGK 392
Query: 464 GRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPK 523
G RGG FL+A D F + +VGTG +D +L + KL P + P
Sbjct: 393 GSRGGMYGSFLLACY-----DPESEEFKTITKVGTGFTDADLQELGKKLPPL--WIDPPG 445
Query: 524 RAPPSFYQVTNNSKERPDVWIESPEKSIILSIT-SDIRTIRSEVFSAPYSLRFPRIDRVR 582
PS + PD+W P+ +I+ +T ++I T + SLRFPR R+R
Sbjct: 446 SRVPSI------LPDEPDIW---PDPAIVWEVTGAEI-TKSPAYKANGISLRFPRFSRIR 495
Query: 583 YDKPWHDCLDVQSFVELV 600
DK D ++ EL
Sbjct: 496 DDKGPEDATTIEQIKELY 513
|
All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 514 |
| >gnl|CDD|185713 cd07903, Adenylation_DNA_ligase_IV, Adenylation domain of DNA Ligase IV | Back alignment and domain information |
|---|
| >gnl|CDD|234900 PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|153437 cd07968, OBF_DNA_ligase_IV, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|224706 COG1793, CDC9, ATP-dependent DNA ligase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|216280 pfam01068, DNA_ligase_A_M, ATP dependent DNA ligase domain | Back alignment and domain information |
|---|
| >gnl|CDD|185711 cd07901, Adenylation_DNA_ligase_Arch_LigB, Adenylation domain of archaeal and bacterial LigB-like DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|185710 cd07900, Adenylation_DNA_ligase_I_Euk, Adenylation domain of eukaryotic DNA Ligase I | Back alignment and domain information |
|---|
| >gnl|CDD|185709 cd07898, Adenylation_DNA_ligase, Adenylation domain of ATP-dependent DNA Ligases | Back alignment and domain information |
|---|
| >gnl|CDD|218206 pfam04675, DNA_ligase_A_N, DNA ligase N terminus | Back alignment and domain information |
|---|
| >gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235108 PRK03180, ligB, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|185715 cd07906, Adenylation_DNA_ligase_LigD_LigC, Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|185712 cd07902, Adenylation_DNA_ligase_III, Adenylation domain of DNA Ligase III | Back alignment and domain information |
|---|
| >gnl|CDD|153435 cd07893, OBF_DNA_ligase, The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|234009 TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, ligase domain | Back alignment and domain information |
|---|
| >gnl|CDD|236599 PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|185716 cd08039, Adenylation_DNA_ligase_Fungal, Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|153438 cd07969, OBF_DNA_ligase_I, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|234007 TIGR02776, NHEJ_ligase_prk, DNA ligase D | Back alignment and domain information |
|---|
| >gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|153436 cd07967, OBF_DNA_ligase_III, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|218210 pfam04679, DNA_ligase_A_C, ATP dependent DNA ligase C terminal region | Back alignment and domain information |
|---|
| >gnl|CDD|153441 cd07972, OBF_DNA_ligase_Arch_LigB, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|185714 cd07905, Adenylation_DNA_ligase_LigC, Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|185704 cd06846, Adenylation_DNA_ligase_like, Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases | Back alignment and domain information |
|---|
| >gnl|CDD|236070 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|222893 PHA02587, 30, DNA ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182006 PRK09633, ligD, ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|234477 TIGR04120, DNA_lig_bact, DNA ligase, ATP-dependent, PP_1105 family | Back alignment and domain information |
|---|
| >gnl|CDD|185708 cd07897, Adenylation_DNA_ligase_Bac1, Adenylation domain of putative bacterial ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|181662 PRK09125, PRK09125, DNA ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236428 PRK09247, PRK09247, ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|185707 cd07896, Adenylation_kDNA_ligase_like, Adenylation domain of kDNA ligases and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|153442 cd08040, OBF_DNA_ligase_family, The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|153440 cd07971, OBF_DNA_ligase_LigD, The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | Back alignment and domain information |
|---|
| >gnl|CDD|218206 pfam04675, DNA_ligase_A_N, DNA ligase N terminus | Back alignment and domain information |
|---|
| >gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|193214 pfam12738, PTCB-BRCT, twin BRCT domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 702 | |||
| KOG0966 | 881 | consensus ATP-dependent DNA ligase IV [Replication | 100.0 | |
| PLN03113 | 744 | DNA ligase 1; Provisional | 100.0 | |
| PRK01109 | 590 | ATP-dependent DNA ligase; Provisional | 100.0 | |
| KOG0967 | 714 | consensus ATP-dependent DNA ligase I [Replication, | 100.0 | |
| TIGR00574 | 514 | dnl1 DNA ligase I, ATP-dependent (dnl1). All prote | 100.0 | |
| PRK09247 | 539 | ATP-dependent DNA ligase; Validated | 100.0 | |
| PRK03180 | 508 | ligB ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PHA02587 | 488 | 30 DNA ligase; Provisional | 100.0 | |
| COG1793 | 444 | CDC9 ATP-dependent DNA ligase [DNA replication, re | 100.0 | |
| TIGR02779 | 298 | NHEJ_ligase_lig DNA polymerase LigD, ligase domain | 100.0 | |
| PRK09632 | 764 | ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK08224 | 350 | ligC ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK05972 | 860 | ligD ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK09633 | 610 | ligD ATP-dependent DNA ligase; Reviewed | 100.0 | |
| PRK07636 | 275 | ligB ATP-dependent DNA ligase; Reviewed | 100.0 | |
| cd07900 | 219 | Adenylation_DNA_ligase_I_Euk Adenylation domain of | 100.0 | |
| TIGR02776 | 552 | NHEJ_ligase_prk DNA ligase D. Members of this prot | 100.0 | |
| cd07903 | 225 | Adenylation_DNA_ligase_IV Adenylation domain of DN | 100.0 | |
| cd07902 | 213 | Adenylation_DNA_ligase_III Adenylation domain of D | 100.0 | |
| PRK09125 | 282 | DNA ligase; Provisional | 100.0 | |
| cd07901 | 207 | Adenylation_DNA_ligase_Arch_LigB Adenylation domai | 100.0 | |
| PHA00454 | 315 | ATP-dependent DNA ligase | 100.0 | |
| cd07898 | 201 | Adenylation_DNA_ligase Adenylation domain of ATP-d | 100.0 | |
| cd07897 | 207 | Adenylation_DNA_ligase_Bac1 Adenylation domain of | 100.0 | |
| cd08039 | 235 | Adenylation_DNA_ligase_Fungal Adenylation domain o | 100.0 | |
| cd07905 | 194 | Adenylation_DNA_ligase_LigC Adenylation domain of | 100.0 | |
| PF01068 | 202 | DNA_ligase_A_M: ATP dependent DNA ligase domain; I | 100.0 | |
| cd07906 | 190 | Adenylation_DNA_ligase_LigD_LigC Adenylation domai | 100.0 | |
| cd07967 | 139 | OBF_DNA_ligase_III The Oligonucleotide/oligosaccha | 100.0 | |
| cd07896 | 174 | Adenylation_kDNA_ligase_like Adenylation domain of | 100.0 | |
| cd06846 | 182 | Adenylation_DNA_ligase_like Adenylation domain of | 99.97 | |
| PF04675 | 177 | DNA_ligase_A_N: DNA ligase N terminus; InterPro: I | 99.97 | |
| cd07968 | 140 | OBF_DNA_ligase_IV The Oligonucleotide/oligosacchar | 99.96 | |
| cd07969 | 144 | OBF_DNA_ligase_I The Oligonucleotide/oligosacchari | 99.96 | |
| cd07895 | 215 | Adenylation_mRNA_capping Adenylation domain of GTP | 99.95 | |
| KOG4437 | 482 | consensus ATP-dependent DNA ligase III [Replicatio | 99.94 | |
| cd07972 | 122 | OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligo | 99.94 | |
| cd07893 | 129 | OBF_DNA_ligase The Oligonucleotide/oligosaccharide | 99.93 | |
| cd07971 | 115 | OBF_DNA_ligase_LigD The Oligonucleotide/oligosacch | 99.84 | |
| cd08040 | 108 | OBF_DNA_ligase_family The Oligonucleotide/oligosac | 99.8 | |
| PF04679 | 97 | DNA_ligase_A_C: ATP dependent DNA ligase C termina | 99.8 | |
| cd07894 | 342 | Adenylation_RNA_ligase Adenylation domain of RNA c | 99.74 | |
| cd07970 | 122 | OBF_DNA_ligase_LigC The Oligonucleotide/oligosacch | 99.72 | |
| PF01331 | 192 | mRNA_cap_enzyme: mRNA capping enzyme, catalytic do | 99.29 | |
| COG5226 | 404 | CEG1 mRNA capping enzyme, guanylyltransferase (alp | 99.13 | |
| cd08041 | 77 | OBF_kDNA_ligase_like The Oligonucleotide/oligosacc | 99.11 | |
| COG1423 | 382 | ATP-dependent DNA ligase, homolog of eukaryotic li | 98.87 | |
| TIGR01209 | 374 | RNA ligase, Pab1020 family. Members of this family | 98.83 | |
| cd09232 | 186 | Snurportin-1_C C-terminal m3G cap-binding domain o | 98.48 | |
| PF14743 | 66 | DNA_ligase_OB_2: DNA ligase OB-like domain; PDB: 2 | 98.21 | |
| smart00532 | 441 | LIGANc Ligase N family. | 97.88 | |
| PF00533 | 78 | BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP | 97.76 | |
| cd00114 | 307 | LIGANc NAD+ dependent DNA ligase adenylation domai | 97.75 | |
| PRK08097 | 562 | ligB NAD-dependent DNA ligase LigB; Reviewed | 97.7 | |
| TIGR00575 | 652 | dnlj DNA ligase, NAD-dependent. The member of this | 97.67 | |
| PRK07956 | 665 | ligA NAD-dependent DNA ligase LigA; Validated | 97.63 | |
| smart00292 | 80 | BRCT breast cancer carboxy-terminal domain. | 97.61 | |
| PRK14351 | 689 | ligA NAD-dependent DNA ligase LigA; Provisional | 97.61 | |
| PF01653 | 315 | DNA_ligase_aden: NAD-dependent DNA ligase adenylat | 97.45 | |
| cd00027 | 72 | BRCT Breast Cancer Suppressor Protein (BRCA1), car | 97.03 | |
| PRK14350 | 669 | ligA NAD-dependent DNA ligase LigA; Provisional | 96.99 | |
| TIGR02307 | 325 | RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of t | 96.96 | |
| PF09414 | 186 | RNA_ligase: RNA ligase; InterPro: IPR021122 This e | 96.93 | |
| PRK01109 | 590 | ATP-dependent DNA ligase; Provisional | 96.92 | |
| COG0272 | 667 | Lig NAD-dependent DNA ligase (contains BRCT domain | 95.85 | |
| PHA02142 | 366 | putative RNA ligase | 95.73 | |
| TIGR02306 | 341 | RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me | 94.43 | |
| KOG3132 | 325 | consensus m3G-cap-specific nuclear import receptor | 94.19 | |
| PRK09247 | 539 | ATP-dependent DNA ligase; Validated | 89.42 | |
| PF12738 | 63 | PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W | 89.2 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 86.51 | |
| KOG2386 | 393 | consensus mRNA capping enzyme, guanylyltransferase | 86.27 | |
| PF04675 | 177 | DNA_ligase_A_N: DNA ligase N terminus; InterPro: I | 84.96 | |
| COG5275 | 276 | BRCT domain type II [General function prediction o | 84.53 | |
| PRK03180 | 508 | ligB ATP-dependent DNA ligase; Reviewed | 83.86 |
| >KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-138 Score=1146.96 Aligned_cols=659 Identities=45% Similarity=0.751 Sum_probs=576.0
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCC----chHhhhHhhcCCCCCCCccccCCCHHHHHHHHHHHh
Q 005331 3 KTEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDS----VDYFSALRLILPSLDRERGSYGLKESVLANCLIDAL 78 (702)
Q Consensus 3 ~~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~l~~~~~~----~~~~~~lrLllp~~d~~r~~ygike~~L~k~~~~~~ 78 (702)
||+++.|+.+|++|+.|+.+.....|.+++++++++|+.+ +|+||++||++|++||+|+.|||||..||++|+++|
T Consensus 1 ~~~~~~F~~~~~~f~~i~~t~~~~~k~~~~~k~~~s~~~~~e~~sd~y~~lRL~lp~lDReR~~Yglket~La~l~i~~l 80 (881)
T KOG0966|consen 1 MASPQNFSEVVDFFNKIRRTSNVKSKQAKFRKNFESWCRPCEVGSDMYVALRLILPDLDRERGSYGLKETVLARLYIRAL 80 (881)
T ss_pred CCCccccchHHHHHHHHHHhhhhHhHHHHHhhccccccccccCCcchhhhhhhcccchhhcccccCchHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999865 999999999999999999999999999999999999
Q ss_pred CCCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhccCCC-CCCCCHHHHHHHHHHHHhhhchHhHH-HHHHHHHHhC
Q 005331 79 GMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMI-SGGLTIKELNDLLDRLASSENRAEKI-SVLSTLIKKT 156 (702)
Q Consensus 79 ~l~~~s~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r~~~~-~~~lTi~eVn~~Ld~La~~~~~~~k~-~~l~~ll~~~ 156 (702)
++|++|.||.+|.||+.++..+ |||+.++++++++|+... ++.|||.|||++||.||.......+. ..|..++++|
T Consensus 81 ~lprds~Da~rL~nwr~~~~~~--Gdfs~i~~~vl~~R~~~~~s~alTi~evN~lLD~LA~~~~~~~~~~~~l~~lv~~~ 158 (881)
T KOG0966|consen 81 HLPRDSADAVRLKNWRASTGAR--GDFSLILYEVLQRRCENPSSGALTIKEVNDLLDSLASGPSEDGKKFKKLSQLVEQC 158 (881)
T ss_pred cCCCCcHHHHHHHhhccCCCcC--ccHHHHHHHHHHHHhcCCCCCceeHHHHHHHHHHHcCCchhhhhhhHHHHHHHHhC
Confidence 9999999999999999887765 999999999999998654 44599999999999999887765554 8999999999
Q ss_pred CHHHHHHHHHHHhhhhccCccccccccccCcCHHHHHhhhCCHHHHHHHHhhhhcccccCC--cccCCccccccccccCC
Q 005331 157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQD--IEVGKAVRPQLAMRIGD 234 (702)
Q Consensus 157 t~~E~k~l~RiIlk~lriG~~e~~il~~~hpda~~~~~~~~dL~~V~~~L~~~~~~~~~~~--i~~~~~~~PmLA~~~~~ 234 (702)
||.|+|||+|||||++++|++|++||.+|||||+++||+|+||+.||+.|.||+.+++..+ |++|..|+||||++...
T Consensus 159 S~~ElkWliriiLK~lklG~se~~Il~vfHPdA~dl~~vtsDLk~Vc~~L~Dp~~~l~~~~~~i~lfsa~~PqLa~~~~~ 238 (881)
T KOG0966|consen 159 SPLELKWLIRIILKNLKLGASEKKILSVFHPDAQDLYNVTSDLKAVCKKLYDPSVGLKELDEDIELFSAFRPQLAQKQKL 238 (881)
T ss_pred CHHHHHHHHHHHHHhhhcCCccchhhhhcCccHHHHHHHhhhHHHHHHHhcCCccCccccccceeehhhcCHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999998877 99999999999999876
Q ss_pred hH-HHHHHcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCCCcch-h----h-HHHHHHhhc--cccceeeeceEEE
Q 005331 235 AH-AAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSEYG-H----A-MSKIIEQNV--LVDRCILDGEMLV 305 (702)
Q Consensus 235 ~~-~~~~~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t~~~-p----~-l~~~~~~~~--~~~~~ILDGE~v~ 305 (702)
.. +++++|+++.|++|+|+||||+|+|++|+.++||||||.|||..| . + +...+...+ ....||||||||+
T Consensus 239 ~~~~~~e~m~~~~f~lEtK~DGERiQlHk~g~~~~yfSRNg~dyT~~yg~s~~~g~lt~~i~~~f~~~v~~cILDGEMm~ 318 (881)
T KOG0966|consen 239 GDWAIIEKMGGQDFYLETKFDGERIQLHKDGGEYKYFSRNGNDYTYEYGASYAHGTLTQRIHGAFNKEVESCILDGEMMT 318 (881)
T ss_pred chHHHHHHhcCCceEEEeeccCceEEEEecCCEEEEEecCCcchhhhcCcccccccccHHHHhhhhhcchheEecceEEE
Confidence 65 688999999999999999999999999999999999999999422 1 1 222222222 2789999999999
Q ss_pred eeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCCCCc
Q 005331 306 WDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (702)
Q Consensus 306 ~d~~~~~~~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~ 385 (702)
||+.+.+++|||+++++...... +.+.++||+|||+||+||++|.+.||..|++.|+.++.+.+++++++.
T Consensus 319 wD~~~~~f~~~G~~~dik~~~~~--~~~~qp~yvvfDLLylNgksL~~~~l~qR~e~L~~v~~p~~~~iei~~------- 389 (881)
T KOG0966|consen 319 WDTKTKRFCPFGSNSDIKELSSR--DGSQQPCYVVFDLLYLNGKSLFGAPLHQRLEILKKVIVPKSGRIEIVR------- 389 (881)
T ss_pred eecchhhhccCCchhhHHHhhcc--ccCCCceEEEeeeeeecCcccCCccHHHHHHHHHhcccCCCCeeEEee-------
Confidence 99999999999999988765542 456789999999999999999999999999999999999999987652
Q ss_pred cccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecCCCCcccCCCCCCeEEEcccccc-CCCcceEEEEEEEecCC
Q 005331 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIR-AGSDLDVLIIGGYYGSG 464 (702)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~~-~g~~~DlvVIG~~~G~G 464 (702)
...+++.++++++|++|+++|.||||+|+++|.|.||.|+++|+|+||+|+. +|+++|++|||||||+|
T Consensus 390 ----------~~~~~~~edi~~~f~~ai~~~~EGIVlK~~~S~Y~pg~R~~gW~K~KPeYlkg~g~dLD~lIiGgy~G~g 459 (881)
T KOG0966|consen 390 ----------SEVGSTKEDIEQFFEEAIDNGEEGIVLKKPDSSYVPGQRSNGWIKLKPEYLKGFGEDLDLLIIGGYYGRG 459 (881)
T ss_pred ----------hhhcccHHHHHHHHHHHHhcCCCceEEeccCcccCccccCCCcEeecHHHHhhcCccccEEEEecccCCC
Confidence 4567899999999999999999999999999999999999999999999999 59999999999999999
Q ss_pred CCCCccceEEEEEecCCCCCCCCcceEEEEEecCCCCHHHHHHHHHhhccccccccCCCCCCCCcccccCCCCCCCcEEE
Q 005331 465 RRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWI 544 (702)
Q Consensus 465 ~r~g~~gs~llg~~d~~~~~~~~~~~~~v~kVgtG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pdvwi 544 (702)
+|+|++.+|+||+.++..++.+|.+|.++|+||+|+|++|+..+.++++++|.+ ..+..+|++++.. +...||+||
T Consensus 460 ~rgg~~~~fl~a~~ek~~p~~~p~~f~sfcrvg~g~s~~e~~~v~~klr~~w~~-~~~~apP~s~l~~---tk~~Pd~wI 535 (881)
T KOG0966|consen 460 DRGGKVLSFLCALAEKAPPNSRPEKFCSFCRVGNGISQKERDTVREKLRGHWKP-TSLEAPPESFLFG---TKKIPDVWI 535 (881)
T ss_pred CCCCeeeeeeehhcccCCCCCccceeeEeeEecCCccHHHHHHHHHhhhhhccc-ccccCCCHHHHhc---ccCCCceeE
Confidence 999999999999998877777899999999999999999999999999999987 2344333334433 234799999
Q ss_pred eCCCceEEEEEeeeceeecccccCCCceeeccEEEEEecCCCccCCCCHHHHHHHHHccCCCcccccccCCCCCCCcccc
Q 005331 545 ESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQF 624 (702)
Q Consensus 545 ~~P~~s~v~ev~a~~~~~~s~~~~~g~tLRfPr~~riR~DK~~~d~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (702)
+ |..|+|++|++. +++.+..|.+++||||||+.++|.||+|+||+|+++|.++...+. ++.+.+ .++++.
T Consensus 536 ~-P~~SiIlqikaa-~i~~s~~f~tn~tLrfPr~ekvR~DK~W~ec~tl~~l~~l~~~~~-------~d~~~~-~kk~~~ 605 (881)
T KOG0966|consen 536 D-PDNSIILQIKAA-EIVPSSNFVTNYTLRFPRIEKVRLDKPWHECLTLNELGDLVNVSK-------SDVEDK-EKKKRD 605 (881)
T ss_pred C-CCCceEEEeehh-eeeecccccccceeecceeeeeecCCcHHHHhhHHHHHHHhcccc-------CCcchh-hhhccc
Confidence 9 999999999953 446889999999999999999999999999999999999985311 111111 111111
Q ss_pred ccccccccccccccCCccccCCccCccccccccCCcEEEEEeCC-CCCCHHHHHHHHHHcCCEEEEecCCCeeEEEe
Q 005331 625 RSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVP-PAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA 700 (702)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~f~g~~f~v~~~~-~~~~k~~l~~~i~~~gG~~~~n~~~~~~~~i~ 700 (702)
..+++++.+ ..-+......+.+.+.|++|+|++|||+++. .++||++||++|++|||+||||+++++|+||+
T Consensus 606 -t~~~~k~~~---~~i~~~~~~~~~~~~~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~ 678 (881)
T KOG0966|consen 606 -TLKVRKRTR---KAIHDSAPNRSKVAKISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIA 678 (881)
T ss_pred -chhhhhhhh---hhhcccccchhcccchhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEE
Confidence 111111111 1223445566788899999999999999986 57889999999999999999999998999996
|
|
| >PLN03113 DNA ligase 1; Provisional | Back alignment and domain information |
|---|
| >PRK01109 ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
| >KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1) | Back alignment and domain information |
|---|
| >PRK09247 ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
| >PRK03180 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PHA02587 30 DNA ligase; Provisional | Back alignment and domain information |
|---|
| >COG1793 CDC9 ATP-dependent DNA ligase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain | Back alignment and domain information |
|---|
| >PRK09632 ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK08224 ligC ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK05972 ligD ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK09633 ligD ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK07636 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
| >cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I | Back alignment and domain information |
|---|
| >TIGR02776 NHEJ_ligase_prk DNA ligase D | Back alignment and domain information |
|---|
| >cd07903 Adenylation_DNA_ligase_IV Adenylation domain of DNA Ligase IV | Back alignment and domain information |
|---|
| >cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III | Back alignment and domain information |
|---|
| >PRK09125 DNA ligase; Provisional | Back alignment and domain information |
|---|
| >cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases | Back alignment and domain information |
|---|
| >PHA00454 ATP-dependent DNA ligase | Back alignment and domain information |
|---|
| >cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases | Back alignment and domain information |
|---|
| >cd07897 Adenylation_DNA_ligase_Bac1 Adenylation domain of putative bacterial ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >cd08039 Adenylation_DNA_ligase_Fungal Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins | Back alignment and domain information |
|---|
| >cd07905 Adenylation_DNA_ligase_LigC Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >cd07906 Adenylation_DNA_ligase_LigD_LigC Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases | Back alignment and domain information |
|---|
| >cd07967 OBF_DNA_ligase_III The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins | Back alignment and domain information |
|---|
| >cd06846 Adenylation_DNA_ligase_like Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases | Back alignment and domain information |
|---|
| >PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >cd07968 OBF_DNA_ligase_IV The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd07969 OBF_DNA_ligase_I The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes | Back alignment and domain information |
|---|
| >KOG4437 consensus ATP-dependent DNA ligase III [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd07972 OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd07893 OBF_DNA_ligase The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >cd07971 OBF_DNA_ligase_LigD The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >cd08040 OBF_DNA_ligase_family The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases | Back alignment and domain information |
|---|
| >PF04679 DNA_ligase_A_C: ATP dependent DNA ligase C terminal region ; InterPro: IPR012309 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins | Back alignment and domain information |
|---|
| >cd07970 OBF_DNA_ligase_LigC The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigC is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate | Back alignment and domain information |
|---|
| >COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd08041 OBF_kDNA_ligase_like The Oligonucleotide/oligosaccharide binding (OB)-fold domain of kDNA ligase-like ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit | Back alignment and domain information |
|---|
| >COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01209 RNA ligase, Pab1020 family | Back alignment and domain information |
|---|
| >cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1 | Back alignment and domain information |
|---|
| >PF14743 DNA_ligase_OB_2: DNA ligase OB-like domain; PDB: 2Q2U_D 2Q2T_A 1FVI_A 1P8L_A | Back alignment and domain information |
|---|
| >smart00532 LIGANc Ligase N family | Back alignment and domain information |
|---|
| >PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 | Back alignment and domain information |
|---|
| >cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain | Back alignment and domain information |
|---|
| >PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed | Back alignment and domain information |
|---|
| >TIGR00575 dnlj DNA ligase, NAD-dependent | Back alignment and domain information |
|---|
| >PRK07956 ligA NAD-dependent DNA ligase LigA; Validated | Back alignment and domain information |
|---|
| >smart00292 BRCT breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family | Back alignment and domain information |
|---|
| >PF09414 RNA_ligase: RNA ligase; InterPro: IPR021122 This entry represents the RNA ligase domain | Back alignment and domain information |
|---|
| >PRK01109 ATP-dependent DNA ligase; Provisional | Back alignment and domain information |
|---|
| >COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA02142 putative RNA ligase | Back alignment and domain information |
|---|
| >TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family | Back alignment and domain information |
|---|
| >KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09247 ATP-dependent DNA ligase; Validated | Back alignment and domain information |
|---|
| >PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose | Back alignment and domain information |
|---|
| >COG5275 BRCT domain type II [General function prediction only] | Back alignment and domain information |
|---|
| >PRK03180 ligB ATP-dependent DNA ligase; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 702 | ||||
| 4hto_A | 240 | Crystal Structure Of The Dbd Domain Of Human Dna Li | 1e-38 | ||
| 2hiv_A | 621 | Atp-Dependent Dna Ligase From S. Solfataricus Lengt | 5e-33 | ||
| 3l2p_A | 579 | Human Dna Ligase Iii Recognizes Dna Ends By Dynamic | 3e-31 | ||
| 3rr5_A | 570 | Dna Ligase From The Archaeon Thermococcus Sp. 1519 | 1e-29 | ||
| 4eq5_A | 571 | Dna Ligase From The Archaeon Thermococcus Sibiricus | 4e-29 | ||
| 2cfm_A | 561 | Atp-Dependent Dna Ligase From Pyrococcus Furiosus L | 6e-29 | ||
| 1x9n_A | 688 | Crystal Structure Of Human Dna Ligase I Bound To 5' | 2e-25 | ||
| 3gde_A | 558 | The Closed Conformation Of Atp-Dependent Dna Ligase | 8e-20 | ||
| 3vnn_A | 139 | Crystal Structure Of A Sub-Domain Of The Nucleotidy | 3e-17 | ||
| 1vs0_A | 310 | Crystal Structure Of The Ligase Domain From M. Tube | 3e-07 |
| >pdb|4HTO|A Chain A, Crystal Structure Of The Dbd Domain Of Human Dna Ligase Iv Apo Form Length = 240 | Back alignment and structure |
|
| >pdb|2HIV|A Chain A, Atp-Dependent Dna Ligase From S. Solfataricus Length = 621 | Back alignment and structure |
| >pdb|3L2P|A Chain A, Human Dna Ligase Iii Recognizes Dna Ends By Dynamic Switching Between Two Dna Bound States Length = 579 | Back alignment and structure |
| >pdb|3RR5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sp. 1519 Length = 570 | Back alignment and structure |
| >pdb|4EQ5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sibiricus Length = 571 | Back alignment and structure |
| >pdb|2CFM|A Chain A, Atp-Dependent Dna Ligase From Pyrococcus Furiosus Length = 561 | Back alignment and structure |
| >pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To 5'-Adenylated, Nicked Dna Length = 688 | Back alignment and structure |
| >pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From Archaeoglobus Fulgidus Length = 558 | Back alignment and structure |
| >pdb|3VNN|A Chain A, Crystal Structure Of A Sub-Domain Of The Nucleotidyltransferase (Adenylation) Domain Of Human Dna Ligase Iv Length = 139 | Back alignment and structure |
| >pdb|1VS0|A Chain A, Crystal Structure Of The Ligase Domain From M. Tuberculosis Ligd At 2.4a Length = 310 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} Length = 579 | Back alignment and structure |
|---|
Score = 448 bits (1155), Expect = e-150
Identities = 139/613 (22%), Positives = 234/613 (38%), Gaps = 67/613 (10%)
Query: 12 LVSLFNWIQKTKPAAKKRSKFRKFLDTYCD----SVDYFSALRLILPSLDRERGSYGLKE 67
L + K + FL D + ++L+LP + Y L +
Sbjct: 12 FRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLP--GVIKTVYNLND 69
Query: 68 SVLANCLIDALGMSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRRQGMI---SGGL 124
+ + D G+ ++ + L
Sbjct: 70 KQIVKLFSRIFNCNPDDMARDL-----------EQGDVSETIRVFFEQSKSFPPAAKSLL 118
Query: 125 TIKELNDLLDRLASSENRAEKISVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFHE 184
TI+E+++ L RL+ E+ L + + A ++K II +I DLK+ K +
Sbjct: 119 TIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDA 178
Query: 185 FHPDAEDLFNVTCDLKLVCEKLKDRNQR---------HKRQDIEVGKAVRPQLAMRIGDA 235
P+A + F + +L+ V E++ Q + V+P LA
Sbjct: 179 LDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPMLAEACKSV 238
Query: 236 HAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE--YGHAMSKIIEQNVL 293
A +K + E K+DG+R+Q+HKNG YFSRS H I +
Sbjct: 239 EYAMKKCPNG-MFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPG 297
Query: 294 VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIH 353
ILD E+L+ D + FG+ KAA D +C F FD +Y D S++
Sbjct: 298 GHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQ----DANVCLFVFDCIYFNDVSLMD 353
Query: 354 QSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETI 413
+ L ER + L + R+ ++ I
Sbjct: 354 RPLCERRKFLHDNMVEIPNRIM-FSE----------------MKRVTKALDLADMITRVI 396
Query: 414 ENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIGGYYGSGRRGGEV 470
+ EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++G +YG G +GG +
Sbjct: 397 QEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMM 454
Query: 471 AQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFY 530
+ FL+ + P + +++ + + G D L + +L K PS+
Sbjct: 455 SIFLMGCYD---PGS--QKWCTVTKCAGGHDDATLARLQNELDMV--KISKDPSKIPSWL 507
Query: 531 QVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDC 590
+V N PD + P+K+ + IT + + S+RFPR R+R DK W
Sbjct: 508 KV--NKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSA 565
Query: 591 LDVQSFVELVHSS 603
++ EL S
Sbjct: 566 TNLPQLKELYQLS 578
|
| >2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* Length = 561 | Back alignment and structure |
|---|
| >2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* Length = 621 | Back alignment and structure |
|---|
| >3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} Length = 558 | Back alignment and structure |
|---|
| >1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 Length = 688 | Back alignment and structure |
|---|
| >1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis} Length = 310 | Back alignment and structure |
|---|
| >1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1 Length = 348 | Back alignment and structure |
|---|
| >3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens} Length = 139 | Back alignment and structure |
|---|
| >1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A* Length = 297 | Back alignment and structure |
|---|
| >2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} Length = 389 | Back alignment and structure |
|---|
| >1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 | Back alignment and structure |
|---|
| >3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus} Length = 370 | Back alignment and structure |
|---|
| >2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae} Length = 461 | Back alignment and structure |
|---|
| >2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 | Back alignment and structure |
|---|
| >1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Length = 264 | Back alignment and structure |
|---|
| >2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
| >1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B* Length = 330 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 702 | |||
| 3l2p_A | 579 | DNA ligase 3; DNA ligase, DNA repair, ATP-binding, | 100.0 | |
| 2hiv_A | 621 | Thermostable DNA ligase; ATP-dependent, open confo | 100.0 | |
| 3gde_A | 558 | DNA ligase; DNA-binding domain, adenylation domain | 100.0 | |
| 2cfm_A | 561 | Thermostable DNA ligase; protein-nucleotide comple | 100.0 | |
| 1x9n_A | 688 | DNA ligase I; 5'-adenylated nicked DNA, protein-DN | 100.0 | |
| 1vs0_A | 310 | Putative DNA ligase-like protein RV0938/MT0965; OB | 100.0 | |
| 1a0i_A | 348 | DNA ligase; DNA replication; HET: DNA ATP; 2.60A { | 100.0 | |
| 1fvi_A | 297 | Chlorella virus DNA ligase-adenylate; adenylated D | 100.0 | |
| 4htp_A | 240 | DNA ligase 4; helical domain, DNA binding domain, | 100.0 | |
| 1p16_A | 395 | GTP--RNA, mRNA capping enzyme alpha subunit; guany | 100.0 | |
| 1ckm_A | 330 | MRNA capping enzyme; nucleotidyltransferase; HET: | 99.97 | |
| 3vnn_A | 139 | DNA ligase 4; non-homologous END joining, DNA repa | 99.95 | |
| 3kyh_C | 461 | MRNA-capping enzyme subunit alpha; 5' modification | 99.9 | |
| 3rtx_A | 343 | MRNA-capping enzyme; guanylyltransferase, RNA poly | 99.89 | |
| 2vug_A | 389 | PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transfe | 99.51 | |
| 3qwu_A | 370 | DNA ligase; structural genomics, PSI-2, midwest ce | 99.42 | |
| 2ep8_A | 100 | Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r | 98.05 | |
| 2hvq_A | 335 | ORF1, hypothetical 37.6 kDa protein in GP24-HOC in | 98.04 | |
| 1ta8_A | 332 | DNA ligase, NAD-dependent; nucleotidyl transferase | 98.04 | |
| 1s68_A | 249 | RNA ligase 2; ribonucleic acid ligase, RNA repair; | 98.01 | |
| 2ebw_A | 97 | DNA repair protein REV1; A/B/A 3 layers, parallel | 97.93 | |
| 1b04_A | 318 | Protein (DNA ligase); DNA replication; 2.80A {Geob | 97.84 | |
| 4id3_A | 92 | DNA repair protein REV1; BRCT domain, protein bind | 97.74 | |
| 4glx_A | 586 | DNA ligase; inhibitor, ligase-ligase inhibitor-DNA | 97.57 | |
| 4glw_A | 305 | DNA ligase; inhibitor, ligase-ligase inhibitor com | 97.51 | |
| 1zau_A | 328 | DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacteriu | 97.47 | |
| 3uq8_A | 322 | DNA ligase; adenylated protein, ATP-grAsp, rossman | 97.34 | |
| 1xk5_A | 204 | Snurportin-1; protein-RNA-complex, transport prote | 97.33 | |
| 3gjx_B | 365 | Snurportin-1; transport, cytoplasm, nucleus, RNA-b | 97.18 | |
| 3jsl_A | 318 | DNA ligase; NAD+-dependent, DNA damage, DNA repair | 97.1 | |
| 1xdn_A | 277 | RNA editing ligase MP52; HET: MSE ATP; 1.20A {Tryp | 97.09 | |
| 1kzy_C | 259 | Tumor suppressor P53-binding protein 1; tandem-BRC | 97.06 | |
| 2owo_A | 671 | DNA ligase; protein-DNA complex, ligase-DNA comple | 97.02 | |
| 2c5u_A | 375 | RNA ligase, T4 RNA ligase 1; nucleotidyl transfera | 96.91 | |
| 1wf6_A | 132 | Similar to S.pombe -RAD4+/CUT5+product (A40727); B | 96.84 | |
| 2d8m_A | 129 | DNA-repair protein XRCC1; parallel beta-sheet, DNA | 96.78 | |
| 3l3e_A | 107 | DNA topoisomerase 2-binding protein 1; BRCT domain | 96.63 | |
| 3pc6_A | 104 | DNA repair protein XRCC1; BRCT domain, protein:pro | 96.58 | |
| 3sgi_A | 615 | DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tub | 96.55 | |
| 1dgs_A | 667 | DNA ligase; AMP complex, NAD+-dependent; HET: DNA | 96.4 | |
| 4e6n_A | 427 | Metallophosphoesterase; RNA repair, RNA ligase, li | 95.83 | |
| 3l46_A | 112 | Protein ECT2; alternative splicing, guanine-nucleo | 95.82 | |
| 3pc7_A | 88 | DNA ligase 3; DNA repair, BRCT domain, protein:pro | 95.74 | |
| 2cou_A | 109 | ECT2 protein; BRCT domain, RHO GTPase, structural | 95.28 | |
| 2k6g_A | 109 | Replication factor C subunit 1; protein, BRCT, DNA | 94.48 | |
| 3u3z_A | 199 | Microcephalin; DNA repair, cell cycle regulation, | 94.42 | |
| 1l7b_A | 92 | DNA ligase; BRCT, autostructure, structural genomi | 94.2 | |
| 2l42_A | 106 | DNA-binding protein RAP1; BRCT domain, protein bin | 93.91 | |
| 2ebu_A | 112 | Replication factor C subunit 1; A/B/A 3 layers, pa | 93.82 | |
| 2hiv_A | 621 | Thermostable DNA ligase; ATP-dependent, open confo | 93.64 | |
| 3olc_X | 298 | DNA topoisomerase 2-binding protein 1; BRCT domain | 93.32 | |
| 2nte_A | 210 | BARD-1, BRCA1-associated ring domain protein 1; BR | 93.3 | |
| 2jw5_A | 106 | DNA polymerase lambda; BRCT domain, family X polym | 93.07 | |
| 1t15_A | 214 | Breast cancer type 1 susceptibility protein; prote | 92.69 | |
| 1l0b_A | 229 | BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu | 91.87 | |
| 2cok_A | 113 | Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r | 91.71 | |
| 3sqd_A | 219 | PAX-interacting protein 1; tandem BRCT domains, ce | 89.9 | |
| 3pa6_A | 107 | Microcephalin; BRCT domain, cell cycle; HET: MSE; | 89.7 | |
| 3olc_X | 298 | DNA topoisomerase 2-binding protein 1; BRCT domain | 89.36 | |
| 2coe_A | 120 | Deoxynucleotidyltransferase, terminal variant; BRC | 89.24 | |
| 3ef0_A | 372 | RNA polymerase II subunit A C-terminal domain phos | 88.5 | |
| 2cfm_A | 561 | Thermostable DNA ligase; protein-nucleotide comple | 87.83 | |
| 3ii6_X | 263 | DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter | 87.76 | |
| 3gde_A | 558 | DNA ligase; DNA-binding domain, adenylation domain | 87.74 | |
| 3l41_A | 220 | BRCT-containing protein 1; BRC1, BRCT domain, tand | 86.94 | |
| 3ef1_A | 442 | RNA polymerase II subunit A C-terminal domain phos | 85.59 | |
| 2etx_A | 209 | Mediator of DNA damage checkpoint protein 1; tande | 83.99 | |
| 1x9n_A | 688 | DNA ligase I; 5'-adenylated nicked DNA, protein-DN | 83.77 | |
| 1z56_C | 264 | DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA | 80.52 | |
| 2dun_A | 133 | POL MU, DNA polymerase MU; layers A/B/A, parallel | 80.5 |
| >3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-107 Score=924.02 Aligned_cols=552 Identities=25% Similarity=0.413 Sum_probs=450.8
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCC----chHhhhHhhcCCCCCCCccccCCCHHHHHHHHHHHhC
Q 005331 4 TEETEVIVLVSLFNWIQKTKPAAKKRSKFRKFLDTYCDS----VDYFSALRLILPSLDRERGSYGLKESVLANCLIDALG 79 (702)
Q Consensus 4 ~~~~~F~~l~~~~e~i~~~~~~~~k~~~l~~~l~~~~~~----~~~~~~lrLllp~~d~~r~~ygike~~L~k~~~~~~~ 79 (702)
.++|+|++||++|++|++++++.+|+++|++||++|..+ .++||++|||+|+.|+ ++|||+|++|+|+|++++|
T Consensus 4 ~~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~~~~~~~~~~~y~~~~~l~P~~~~--~~~gi~ek~l~k~~~~~~g 81 (579)
T 3l2p_A 4 HKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIK--TVYNLNDKQIVKLFSRIFN 81 (579)
T ss_dssp SGGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC-------CCHHHHHHHHCTTTSC--CCCSCCHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCCcccccchHHHHHHHhCCCccC--cccCCcHHHHHHHHHHHHC
Confidence 457999999999999999999999999999999998643 5899999999999984 6999999999999999999
Q ss_pred CCcChHHHHHHhhhhcCCCCCCCCCHHHHHHHHhhhc--cCC-CCCCCCHHHHHHHHHHHHhhhchHhHHHHHHHHHHhC
Q 005331 80 MSKDSADAVRLINWRKGGAAPNAGNFPMVAAEVLQRR--QGM-ISGGLTIKELNDLLDRLASSENRAEKISVLSTLIKKT 156 (702)
Q Consensus 80 l~~~s~~~~~L~~wk~~~~~~~~gD~~~~~~~v~~~r--~~~-~~~~lTi~eVn~~Ld~La~~~~~~~k~~~l~~ll~~~ 156 (702)
++.++ ..++ | ..||||.+|..++..+ +.. .+++|||.|||+.|++||..++...+.++|+.|+.+|
T Consensus 82 ~~~~~--~~~~--~-------~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~ 150 (579)
T 3l2p_A 82 CNPDD--MARD--L-------EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRC 150 (579)
T ss_dssp SCHHH--HHHH--G-------GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTC
T ss_pred cCHHH--HHHH--H-------HcCCHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhC
Confidence 99753 3333 3 3599999988876543 222 3579999999999999999999888889999999999
Q ss_pred CHHHHHHHHHHHhhhhccCccccccccccCcCHHHHHhhhCCHHHHHHHHhhhhc---------ccccCCcccCCccccc
Q 005331 157 NAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQ---------RHKRQDIEVGKAVRPQ 227 (702)
Q Consensus 157 t~~E~k~l~RiIlk~lriG~~e~~il~~~hpda~~~~~~~~dL~~V~~~L~~~~~---------~~~~~~i~~~~~~~Pm 227 (702)
||.|+|||+|+|+++||+|+++++|+.+|||+|.++|++++||+.||+.+.+... .+....+.+|.||+||
T Consensus 151 ~~~E~k~l~R~i~~~lriG~~e~~vl~a~~~~a~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~PM 230 (579)
T 3l2p_A 151 TANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTPVQPM 230 (579)
T ss_dssp CSHHHHHHHHHHTTCCSSSCCHHHHHHTTCTTHHHHHHHSCCHHHHHHHHHHHHHSCC--------CCCCCCTTSCCCCC
T ss_pred CHHHHHHHHHHHHhhhhcccchhHHHHHhCHHHHHHHhhcCCHHHHHHHHHhhchhhhcccccccccccccCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999988864211 1223557889999999
Q ss_pred cccccCChHHHHHHcCCCceEEEEecceEEEEEEEeCCEEEEEeCCCCCCCc-chhhHHHHHHhhc-cccceeeeceEEE
Q 005331 228 LAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHKNGSEIHYFSRSFLDHSE-YGHAMSKIIEQNV-LVDRCILDGEMLV 305 (702)
Q Consensus 228 LA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~~g~~v~~~SR~g~d~t~-~~p~l~~~~~~~~-~~~~~ILDGE~v~ 305 (702)
||+++.+++++++++.+ .|++|+||||+|+|+|++|+++++|||||++++. ..+.+.+.+...+ ...+||||||||+
T Consensus 231 LA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~~~p~~~~~l~~~l~~~~~~~~~~iLDGElv~ 309 (579)
T 3l2p_A 231 LAEACKSVEYAMKKCPN-GMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLL 309 (579)
T ss_dssp EEEECCCHHHHHHHCTT-CEEEEECCCSEEEEEEEETTEEEEECTTSCBCCGGGTTTGGGTHHHHSTTCSEEEEEEEEEE
T ss_pred cCCcCCCHHHHHhhCCC-CeEEEEccCcEEEEEEEECCEEEEECCCCCccChhHHHHHHHHHHHhcCcCCceEEEeEEEE
Confidence 99999999888888754 6999999999999999999999999999999842 2223333333333 2468999999999
Q ss_pred eeCCCCccccccchHHHHHHhhcCCCCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCCCcccccccCCCCCc
Q 005331 306 WDTSLNRFAEFGSNQEIAKAARDGLSSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNS 385 (702)
Q Consensus 306 ~d~~~~~~~~F~~lq~~~~~~r~~~~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~~~~~~~~p~~~~~~ 385 (702)
||+.+++++||+.+|...+.. ..+.+++|++|||||+||++|++.||.+||++|++++.+.++++.+..
T Consensus 310 ~d~~~g~~~~F~~L~~~~~~~----~~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~~~i~~~~------- 378 (579)
T 3l2p_A 310 IDNKTGKPLPFGTLGVHKKAA----FQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSE------- 378 (579)
T ss_dssp BCTTTCCBCCGGGGSHHHHHH----CSSCCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBTTTEEECC-------
T ss_pred EeCCCCcccCHHHHHHHhhhh----cccCCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhcCCCeEEEee-------
Confidence 998778889999987543221 124689999999999999999999999999999999988766654321
Q ss_pred cccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEecCCCCcccCCCCCCeEEEccccccC---CCcceEEEEEEEec
Q 005331 386 HVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA---GSDLDVLIIGGYYG 462 (702)
Q Consensus 386 ~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K~~ds~Y~~G~Rs~~WlKvK~~y~~~---g~~~DlvVIG~~~G 462 (702)
.....+.++++++|++++++|+||||+|+++|+|.||+| +|+|+|++|+++ ++++|+||||+|+|
T Consensus 379 ----------~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~vViG~~~G 446 (579)
T 3l2p_A 379 ----------MKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYG 446 (579)
T ss_dssp ----------EEEECSHHHHHHHHHHHHHTTCCCEEEEESSCCCCTTCE--EEEEECTTTCC---CCEEEEEEEEEEECC
T ss_pred ----------eEEcCCHHHHHHHHHHHHHhCCCceEEecCcCCCCCCCe--eeEEEechhhccccccccccEEEEEEEeC
Confidence 223467889999999999999999999999999999988 899999999874 47999999999999
Q ss_pred CCCCCCccceEEEEEecCCCCCCCCcceEEEEEecCCCCHHHHHHHHHhhccccccccCCCCCCCCcccccCCCCCCCcE
Q 005331 463 SGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDV 542 (702)
Q Consensus 463 ~G~r~g~~gs~llg~~d~~~~~~~~~~~~~v~kVgtG~s~~~~~~l~~~l~~~~~~~~~~~~~pp~~~~~~~~~~~~pdv 542 (702)
+|+++|.+|+|+||++|+++ +.|+++||||||||++++++|.++|.+++... +...+|.|+... ....||+
T Consensus 447 ~Gkr~g~~g~lllg~~d~~~-----~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~--~~~~~~~~~~~~--~~~~pd~ 517 (579)
T 3l2p_A 447 QGSKGGMMSIFLMGCYDPGS-----QKWCTVTKCAGGHDDATLARLQNELDMVKISK--DPSKIPSWLKVN--KIYYPDF 517 (579)
T ss_dssp CTTSCSSCCEEEEEEECTTT-----SSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC-----------------------
T ss_pred CCCCCCceeEEEEEEEeCCC-----CeEEEecCccCCCCHHHHHHHHHHhhcccccc--CCccCCceeecC--CCCCCcE
Confidence 99999999999999998653 37999999999999999999999999987652 112245576542 3468999
Q ss_pred EEeCCCceEEEEEeeeceeecccccC-CCceeeccEEEEEecCCCccCCCCHHHHHHHHHc
Q 005331 543 WIESPEKSIILSITSDIRTIRSEVFS-APYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHS 602 (702)
Q Consensus 543 wi~~P~~s~v~ev~a~~~~~~s~~~~-~g~tLRfPr~~riR~DK~~~d~~t~~el~~l~~~ 602 (702)
|+..|+.++|+||+++.. ..|+.|+ .|++||||||.|+|+||+|+||+|++++.+||+.
T Consensus 518 ~~~~P~~~~V~Ei~~~~i-~~S~~~~~~G~sLRFPR~~riR~DK~~~ea~t~~~l~~l~~~ 577 (579)
T 3l2p_A 518 IVPDPKKAAVWEITGAEF-SKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQL 577 (579)
T ss_dssp -------CEEEEEEESCE-EECTTSSSTTEEESSCEECCCCSSCCSSSSCBHHHHHHHHHT
T ss_pred EEecCCCCeEEEEEeeEE-eecCCcccCCEEEECCeEEEEeCCCChHHCCCHHHHHHHHhh
Confidence 984488889999997543 3577775 7999999999999999999999999999999964
|
| >2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* | Back alignment and structure |
|---|
| >3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* | Back alignment and structure |
|---|
| >1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 | Back alignment and structure |
|---|
| >1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1 | Back alignment and structure |
|---|
| >1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A* | Back alignment and structure |
|---|
| >4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A* | Back alignment and structure |
|---|
| >1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3 | Back alignment and structure |
|---|
| >1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B* | Back alignment and structure |
|---|
| >3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A | Back alignment and structure |
|---|
| >2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} | Back alignment and structure |
|---|
| >3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A* | Back alignment and structure |
|---|
| >1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A* | Back alignment and structure |
|---|
| >1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4 | Back alignment and structure |
|---|
| >2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2 | Back alignment and structure |
|---|
| >4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} | Back alignment and structure |
|---|
| >4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A* | Back alignment and structure |
|---|
| >1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B | Back alignment and structure |
|---|
| >3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A* | Back alignment and structure |
|---|
| >1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4 | Back alignment and structure |
|---|
| >1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B | Back alignment and structure |
|---|
| >2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
| >2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4} | Back alignment and structure |
|---|
| >1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 | Back alignment and structure |
|---|
| >2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A | Back alignment and structure |
|---|
| >3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* | Back alignment and structure |
|---|
| >4e6n_A Metallophosphoesterase; RNA repair, RNA ligase, ligase-activating, protein binding; HET: AMP; 2.39A {Clostridium thermocellum} PDB: 4drf_A* 3ty9_A* 3ty8_A* 3ty5_A* | Back alignment and structure |
|---|
| >3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} | Back alignment and structure |
|---|
| >3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* | Back alignment and structure |
|---|
| >2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A | Back alignment and structure |
|---|
| >3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* | Back alignment and structure |
|---|
| >1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 | Back alignment and structure |
|---|
| >2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A* | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* | Back alignment and structure |
|---|
| >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A | Back alignment and structure |
|---|
| >2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A | Back alignment and structure |
|---|
| >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 | Back alignment and structure |
|---|
| >2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A | Back alignment and structure |
|---|
| >3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* | Back alignment and structure |
|---|
| >2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A* | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* | Back alignment and structure |
|---|
| >3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* | Back alignment and structure |
|---|
| >3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A | Back alignment and structure |
|---|
| >1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1 | Back alignment and structure |
|---|
| >1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 702 | ||||
| d1x9na3 | 220 | d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human ( | 3e-36 | |
| d1x9na2 | 148 | b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (H | 5e-29 | |
| d1a0ia2 | 239 | d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-te | 5e-22 | |
| d1x9na1 | 272 | a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human ( | 5e-18 | |
| d1fvia2 | 188 | d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-te | 1e-16 | |
| d1s68a_ | 233 | d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Ba | 2e-14 | |
| d1p16a2 | 245 | d.142.2.3 (A:1-245) mRNA capping enzyme alpha subu | 2e-12 | |
| d1ckma2 | 228 | d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA | 2e-09 | |
| d1wf6a_ | 132 | c.15.1.5 (A:) DNA topoisomerase II binding protein | 2e-06 | |
| d1cdza_ | 96 | c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom | 5e-06 | |
| d1in1a_ | 88 | c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sa | 6e-05 |
| >d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: ATP-dependent DNA ligase catalytic domain domain: DNA ligase I (LIG1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 133 bits (335), Expect = 3e-36
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 22/234 (9%)
Query: 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLD 276
+ G ++P LA ++ E K+DG R QIH G E+ FSR+ D
Sbjct: 1 LSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED 60
Query: 277 HSEYGHAMSKIIEQNVL--VDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLSSDR 334
++ + I + L V ILD E + WD + F + D
Sbjct: 61 NTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQV 120
Query: 335 QLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSKGRLETLVPDHGLNSHVRPQGEPC 394
Q+C +AFD++Y+ S++ + L R +LL++ ++G
Sbjct: 121 QVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEF-----------------VFA 163
Query: 395 WSLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYI 446
SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+
Sbjct: 164 TSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYL 217
|
| >d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 148 | Back information, alignment and structure |
|---|
| >d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} Length = 239 | Back information, alignment and structure |
|---|
| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
| >d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 188 | Back information, alignment and structure |
|---|
| >d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Length = 233 | Back information, alignment and structure |
|---|
| >d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} Length = 245 | Back information, alignment and structure |
|---|
| >d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} Length = 228 | Back information, alignment and structure |
|---|
| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 702 | |||
| d1x9na3 | 220 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1x9na2 | 148 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 99.97 | |
| d1a0ia2 | 239 | ATP-dependent DNA ligase, N-terminal domain {Bacte | 99.96 | |
| d1fvia2 | 188 | ATP-dependent DNA ligase, N-terminal domain {Chlor | 99.96 | |
| d1x9na1 | 272 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 99.96 | |
| d1ckma2 | 228 | RNA guanylyltransferase (mRNA capping enzyme), N-t | 99.78 | |
| d1p16a2 | 245 | mRNA capping enzyme alpha subunit {Yeast (Candida | 99.76 | |
| d1s68a_ | 233 | RNA ligase 2, N-terminal domain {Bacteriophage T4 | 99.47 | |
| d1a0ia1 | 109 | ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: | 98.12 | |
| d1cdza_ | 96 | DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta | 97.93 | |
| d1fvia1 | 104 | ATP-dependent DNA ligase {Chlorella virus PBCV-1 [ | 97.85 | |
| d1in1a_ | 88 | DNA ligase III alpha {Human (Homo sapiens) [TaxId: | 97.76 | |
| d1wf6a_ | 132 | DNA topoisomerase II binding protein 1, TopBP1 {Hu | 97.61 | |
| d1b04a_ | 312 | Adenylation domain of NAD+-dependent DNA ligase {B | 97.5 | |
| d1t15a2 | 102 | Breast cancer associated protein, BRCA1 {Human (Ho | 97.38 | |
| d1ta8a_ | 313 | Adenylation domain of NAD+-dependent DNA ligase {E | 97.28 | |
| d1xdna_ | 265 | RNA editing ligase MP52 {Trypanosoma brucei [TaxId | 96.19 | |
| d1dgsa3 | 314 | Adenylation domain of NAD+-dependent DNA ligase {T | 96.1 | |
| d1l7ba_ | 92 | NAD+-dependent DNA ligase, domain 4 {Thermus therm | 95.23 | |
| d1l0ba2 | 97 | Breast cancer associated protein, BRCA1 {Rat (Ratt | 93.95 | |
| d1x9na1 | 272 | DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: | 91.76 | |
| d1t15a1 | 109 | Breast cancer associated protein, BRCA1 {Human (Ho | 89.45 |
| >d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: DNA ligase/mRNA capping enzyme, catalytic domain family: ATP-dependent DNA ligase catalytic domain domain: DNA ligase I (LIG1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-45 Score=370.39 Aligned_cols=210 Identities=27% Similarity=0.533 Sum_probs=175.8
Q ss_pred cccCCccccccccccCChHHHHHHcCCCceEEEEecceEEEEEEE-eCCEEEEEeCCCCCCCcchhhHHHHHHhhc--cc
Q 005331 218 IEVGKAVRPQLAMRIGDAHAAWRKLHGKEVVIECKFDGDRIQIHK-NGSEIHYFSRSFLDHSEYGHAMSKIIEQNV--LV 294 (702)
Q Consensus 218 i~~~~~~~PmLA~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qvh~-~g~~v~~~SR~g~d~t~~~p~l~~~~~~~~--~~ 294 (702)
|+||.|++||||++...+++.++++.+.+|++|+||||+|||+|+ .++++++|||+|+++|..+|++.+.+.... ..
T Consensus 1 ~~pg~P~~PMLA~~~~~~~~~~~~~~~~~~~~e~K~DG~R~~i~~~~~~~v~l~SR~g~~~t~~~p~l~~~~~~~~~~~~ 80 (220)
T d1x9na3 1 LSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSV 80 (220)
T ss_dssp CCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCBCTTTCHHHHHTSGGGBCTTC
T ss_pred CCCCCCCCCeeCCCCCChHHHHhhcCCCcEEEEEeECcEEEEEEEECCCEEEEEeCCCccccccchhHHHHHHHhhcCCC
Confidence 589999999999999988888899988999999999999999998 578999999999999999999876553322 24
Q ss_pred cceeeeceEEEeeCCCCccccccchHHHHHHhhcCC---CCCCceEEEEEEEeeeCCccccCCCHHHHHHHHHhhccCCC
Q 005331 295 DRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGL---SSDRQLCYFAFDVLYVGDTSVIHQSLKERHELLQKVVKPSK 371 (702)
Q Consensus 295 ~~~ILDGE~v~~d~~~~~~~~F~~lq~~~~~~r~~~---~~~~~~~~~vFDiL~lng~~l~~~pl~eRr~~L~~~~~~~~ 371 (702)
.++|||||||+||.....+.+| +.+....+... ....+++|+|||||++||+++++.||.+|+++|++++.+.+
T Consensus 81 ~~~iLDGEl~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vFDil~~~g~~~~~~p~~eR~~~L~~~~~~~~ 157 (220)
T d1x9na3 81 TSFILDTEAVAWDREKKQIQPF---QVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETE 157 (220)
T ss_dssp CCEEEEEEEEEECTTTCSBCCH---HHHTTSCSSCCCGGGCCSEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCBT
T ss_pred cceeeeeeeEEecCCCCccchH---HHHhhhhhcccchhhhccccceEEEEEEEECCcchhhhhHHHHHHHHHHHhccCC
Confidence 6899999999999876655555 43322222111 12357999999999999999999999999999999998877
Q ss_pred CcccccccCCCCCccccCCCCCccccccCCHHHHHHHHHHHHHCCCceEEEe--cCCCCcccCCCCCCeEEEcccccc
Q 005331 372 GRLETLVPDHGLNSHVRPQGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIR 447 (702)
Q Consensus 372 ~~~~~~~p~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~ai~~g~EGlV~K--~~ds~Y~~G~Rs~~WlKvK~~y~~ 447 (702)
+++.++. ...+++.+++.+++++++++|.||||+| +++|+|.+|+||.+|+|+||+|++
T Consensus 158 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~g~EGim~K~~~~~s~Y~~GkRs~~w~K~K~ey~d 218 (220)
T d1x9na3 158 GEFVFAT-----------------SLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLD 218 (220)
T ss_dssp TTEEECC-----------------EECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSCTTTCSEEEEEEEHHHHH
T ss_pred CeEEEEE-----------------eeccCCHHHHHHHHHHHHHCCCceEEEeccCCCCCeecCCcCCCeEEEcccccC
Confidence 6654321 3456889999999999999999999999 579999999999999999999975
|
| >d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
| >d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fvia1 b.40.4.6 (A:190-293) ATP-dependent DNA ligase {Chlorella virus PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
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| >d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
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| >d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
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| >d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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