Citrus Sinensis ID: 005356

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700

MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQGLSSFAQGNSMRKNENGSYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAGGSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSETNNYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHVEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSINEDQLKPEGSSAGVPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANPFPFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLVGGNGGSPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISVSLRPGC

ccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccEEEEcccccccccccccccEccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHccccccccccccEEEcccccccccEEEEEEccccccc

MDSSRRAVESYWRSRmidgatsdedkvtpvyKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHykgqldplkgDALNKAVRDMAHEAISAIfseenkpapvedlslnkriqgfgntnfempsedkKSFLSEVVGLGSASIKQGLSsfaqgnsmrknengsyrspnlrrsltiendysdryepvelrnetqggydisknvaggswnqdsrvlkedrlngdssasytgskTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFcenndvvvkcsespqsslREKANKVLSLLGeeqagglvsgsersvkaetttvvqmpdlidtadpedhsetnnyatnpsdqnisnlstsstpliddlftdslgtgannseqknaddpfadvlfhtsegkeHVEDLfsgmtvdskpvasgnllaadksgsepfddifgshteilpkqenqknnfndlmagfsinedqlkpegssagvpsesifsdsssnpsqqlsSDALSSLlgsqsagmnanpfpfgtmpynipagmtlnpsiasqpmnysaMGNLFAQQQFLAAMSNLQHignlnvhnsgaanlvggnggsplpdifqpnfptqasmpalnnskkedtraFDFISVSLRPGC

MDSSRRAVESywrsrmidgatsdedkvtpvYKLEEICELLRSSHVSIGKEVSDFILKrlehkspvvkqkalrlikysvgksgtdfrREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISaifseenkpapVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQGLssfaqgnsmrknengsyrspnlrrsltiendysdryepvelrnetqggydisknvaggswnqdsrvlkedrlngdssasytgsktreeKLLETIVtyggvrlqPTRDAIQVFLVEAAKLDALAMSRALEaklqsplwqvRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVkcsespqsslREKANKVLSLLGeeqagglvsgsersvkaetttvvqmpdliDTADPEDHSETnnyatnpsdqnisnlSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHVEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSINEDQLKPEGSSAGVPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANPFPFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLVGGNGGSPLPDIFQPNFPTQASMPalnnskkedtrAFDFISVSLRPGC

MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQGLSSFAQGNSMRKNENGSYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAGGSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSETNNYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHVEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSINEDQLKPEGSSAGVPsesifsdsssnpsqqlssdalssllgsqsagMNANPFPFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLVGGNGGSPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISVSLRPGC

*************************KVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAI**********************************************************************************************************************************************LLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKC******************************************************************************************************************************************************************************************************************************************FGTMPYNIPAGMTL********MNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLV***********************************************

**********YWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAI***************************************************************************************************************************************************VT******QPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVV*****************************************************************************************************************************************************************************************************************************************PFPF*TMPYNIPAGMTL***IASQPMNYSAMGNLFAQQQFLAA*******************************IF**********************AFDFISVSLRPGC

**********YWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQGLSSFAQGNSMRKNENGSYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAGGSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKC**********KANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSETNNYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHVEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSINEDQL******************************LSSLLGSQSAGMNANPFPFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLVGGNGGSPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISVSLRPGC

*********SYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE*************************************************************************************************************************************TREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE********************************PE**************************L*DDLFTDSLGTGANN****NADDPFADVLFHTS*********************************************************NDLMAGFSINEDQLKPEGSSAGVPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANPFPFGTMPYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANL**GNGGSPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISVSLRP**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		700	2.2.26 [Sep-21-2011]
Q9C5H4		690	VHS domain-containing pro	yes	no	0.962	0.976	0.591	0.0
G3V8Y7		569	AP-4 complex accessory su	yes	no	0.167	0.205	0.319	2e-09
Q3U3N6		573	AP-4 complex accessory su	yes	no	0.167	0.204	0.319	2e-09
Q4V832		559	AP-4 complex accessory su	N/A	no	0.218	0.273	0.293	3e-08
Q96N21		525	AP-4 complex accessory su	yes	no	0.188	0.251	0.3	1e-07

>sp\|Q9C5H4\|Y3627_ARATH VHS domain-containing protein At3g16270 OS=Arabidopsis thaliana GN=At3g16270 PE=1 SV=1	Back alignment and function desciption

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/702 (59%), Positives = 502/702 (71%), Gaps = 28/702 (3%)

Query: 1   MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLE 60
           MD+SRRAVESYWRSRMID  TSDEDKV PVYKLEEIC+LLRSSHVSI KE S+FILKRL+
Sbjct: 1   MDTSRRAVESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLD 60

Query: 61  HKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRD 120
           +KSP+VKQKALRLIKY+VGKSG++FRREMQR+S  VR LFHYKG  DPLKGDALNKAVR+
Sbjct: 61  NKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE 120

Query: 121 MAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQ 180
            AHE ISAIFSEEN   P    S+N+RI+GFGNTNF++PS D KSFLSEVVG+GSASIKQ
Sbjct: 121 TAHETISAIFSEENGTKPAAPESINRRIEGFGNTNFQVPSNDNKSFLSEVVGIGSASIKQ 180

Query: 181 GLSSFAQGNSMRKNENG--SYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVA 238
           G+S+FAQG+  +KNENG  SYR PNL RSLT+EN+   RY+PV+L  +  G Y  SKN  
Sbjct: 181 GISNFAQGHLPKKNENGSSSYRGPNLHRSLTMENENFSRYDPVKLGKD--GNYGTSKNTT 238

Query: 239 GGSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEA 298
           GGSW   S    E      S++    SKTREEKLLETIVT GGVRLQPTRDA+ VF++EA
Sbjct: 239 GGSWGHASGEASE-----SSASVRVESKTREEKLLETIVTSGGVRLQPTRDALHVFILEA 293

Query: 299 AKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKC 358
           AK+DA+A+S AL+ KL SP+WQVRMKA+CVLE+ILRKK+DE FSI+ +YF EN D + +C
Sbjct: 294 AKMDAVALSIALDGKLHSPMWQVRMKALCVLEAILRKKEDENFSIVHTYFSENLDAIQRC 353

Query: 359 SESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSET 418
           +ESPQSSLREKANKVLSLL   Q+ GL+S S+ +VK E    V +PDLIDT D +D    
Sbjct: 354 AESPQSSLREKANKVLSLLNGGQSSGLMSSSDNTVKRE--AAVDLPDLIDTGDSDD--TL 409

Query: 419 NNYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEH 478
           NN   N  D   S ++T+   + DD F DS   G ++SE+K  DDPFADV FH +E KE 
Sbjct: 410 NNL--NAIDTG-STVATAGPLMDDDWFGDSSDIGLSSSEKKTDDDPFADVSFHPNEEKES 466

Query: 479 VEDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFS 538
            +DLFSGMTV  K  A G     D        D+FGS  ++  + ++ K N NDLM  FS
Sbjct: 467 ADDLFSGMTVGEKSAAVGGNHVPD------LFDMFGSTAKLEAEPKDAK-NINDLMGSFS 519

Query: 539 INEDQLKPEGSSAGVPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANP-FPFGTMP 597
           I+E+    +GSS+    + +F+  S+  S Q   + +  +LGSQ+ G   N   P G MP
Sbjct: 520 IDENNSNQKGSSSSTLPQDLFAMPSTT-SHQAPENPVGGILGSQNPGFIQNTMLPGGVMP 578

Query: 598 YNIPAGMTLNPSIASQPMNYSAMGNLFA-QQQFLAAMSNLQHIGNLNVHNSGAANLVGGN 656
           +N P GM +NP+ ASQP+NY+AM +L A QQQ+L  MSN Q  GNLN   SG    +G +
Sbjct: 579 FNFPQGMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSMGTS 638

Query: 657 GG--SPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISVSL 696
           GG  S LPDIFQPNF  QA    +N SKKEDTRAFDFIS  L
Sbjct: 639 GGNQSALPDIFQPNFGNQAPTSTMNGSKKEDTRAFDFISDHL 680

Arabidopsis thaliana (taxid: 3702)

>sp\|G3V8Y7\|AP4AT_RAT AP-4 complex accessory subunit tepsin OS=Rattus norvegicus GN=Enthd2 PE=2 SV=1	Back alignment and function description

>sp\|Q3U3N6\|AP4AT_MOUSE AP-4 complex accessory subunit tepsin OS=Mus musculus GN=Enthd2 PE=1 SV=1	Back alignment and function description

>sp\|Q4V832\|AP4AT_XENLA AP-4 complex accessory subunit tepsin OS=Xenopus laevis GN=enthd2 PE=2 SV=2	Back alignment and function description

>sp\|Q96N21\|AP4AT_HUMAN AP-4 complex accessory subunit tepsin OS=Homo sapiens GN=ENTHD2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		700
225442541		709	PREDICTED: VHS domain-containing protein	0.988	0.976	0.677	0.0
147838869		1694	hypothetical protein VITISV_011432 [Viti	0.984	0.406	0.678	0.0
224054388		703	predicted protein [Populus trichocarpa]	0.975	0.971	0.681	0.0
255549890		699	conserved hypothetical protein [Ricinus	0.97	0.971	0.661	0.0
356526101		700	PREDICTED: VHS domain-containing protein	0.977	0.977	0.638	0.0
356522998		701	PREDICTED: VHS domain-containing protein	0.962	0.961	0.642	0.0
357513387		709	VHS domain-containing protein [Medicago	0.978	0.966	0.618	0.0
449466679		692	PREDICTED: VHS domain-containing protein	0.961	0.972	0.615	0.0
9279710		714	unnamed protein product [Arabidopsis tha	0.962	0.943	0.592	0.0
2062175		701	hypothetical protein [Arabidopsis thalia	0.962	0.961	0.592	0.0

>gi\|225442541\|ref\|XP_002284183.1\| PREDICTED: VHS domain-containing protein At3g16270 [Vitis vinifera] gi\|297743233\|emb\|CBI36100.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/703 (67%), Positives = 553/703 (78%), Gaps = 11/703 (1%)

Query: 1   MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLE 60
           MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSI KEVS+FILKRL+
Sbjct: 1   MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIVKEVSEFILKRLD 60

Query: 61  HKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRD 120
           HKSPVV+QKALRLIKY+VGKSG +FRREMQRHS  VRQL HYKGQLD LKGDALNKAVRD
Sbjct: 61  HKSPVVRQKALRLIKYAVGKSGVEFRREMQRHSVAVRQLLHYKGQLDALKGDALNKAVRD 120

Query: 121 MAHEAISAIFS-EENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIK 179
            A E ISAIF+ EENKPAP EDL  N+RIQGFGNTN+EMPSEDKKSFLSEVVGLGS SIK
Sbjct: 121 TAQETISAIFAAEENKPAPSEDL--NRRIQGFGNTNYEMPSEDKKSFLSEVVGLGSTSIK 178

Query: 180 QGLSSFAQGNSMRKNENGSYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAG 239
           QG+SS  QG+S+RKN+NGSY+SPNLRRSLT E +Y DRYE VE +NETQ  +  SKNV+G
Sbjct: 179 QGISSITQGHSLRKNDNGSYKSPNLRRSLTTEIEYQDRYEGVEHQNETQSSFGSSKNVSG 238

Query: 240 GSWNQDSRVLKEDRLNGDSSASYTGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAA 299
           G WNQD R+ K +  NGDSS+S+  SKTREE+LLETIVT GGVRLQPTRDAIQ+FL+EAA
Sbjct: 239 GPWNQDVRITKSETTNGDSSSSFAESKTREERLLETIVTSGGVRLQPTRDAIQIFLIEAA 298

Query: 300 KLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCS 359
           KLDALA+S ALE+KL SPLWQVRMKA+CVL+SILRKKD+E+FS + SYFCEN DVV+KC 
Sbjct: 299 KLDALALSHALESKLHSPLWQVRMKAVCVLDSILRKKDEEQFSTVASYFCENKDVVLKCC 358

Query: 360 ESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSETN 419
           ESPQ+SLREKANKVLSLLG EQ G  +S  E+ +K ET   VQMPDLIDT  P+D+    
Sbjct: 359 ESPQASLREKANKVLSLLGGEQTGSTMSPPEKPLKTETVPAVQMPDLIDTGGPDDYYGAE 418

Query: 420 NYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHV 479
           +     SDQ++ NL+TS++PLIDDLF D LG   N  EQKN DDPFADV F + E +E V
Sbjct: 419 DSIKTQSDQSVPNLTTSTSPLIDDLFGDGLGVSENTGEQKNDDDPFADVSFLSGEAREQV 478

Query: 480 EDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSI 539
           +DLFSGMTVD K V +  +  A  S      DIFGS+ E+  +QEN K + NDLMAG SI
Sbjct: 479 DDLFSGMTVDDK-VGANEIPKAATSNEPELFDIFGSNAELPQEQENHKKDVNDLMAGLSI 537

Query: 540 NED--QLKPEGSSAGVPSESIFSDSSSNPSQQLSSDALSSLLGSQSAGMNANP-FPFGTM 596
           N +      +G   G  SE++FSDS+S   +Q+S+DAL+   GS++AGMNAN  FP G+M
Sbjct: 538 NGNVSNTTQKGMLPGALSETVFSDSNSYSPKQVSNDALNG-FGSETAGMNANAMFPLGSM 596

Query: 597 PYNIPAGMTLNPSIASQPMNYSAMGNLFAQQQFLAAMSNLQHIGNLNVHNSGAANLVG-- 654
           PYNIP G+  NP+  SQPMNY AMGN FAQQQFLAAMSN Q +GNL   ++G  +  G  
Sbjct: 597 PYNIPPGIMFNPAFPSQPMNYGAMGNFFAQQQFLAAMSNFQQLGNLTSQSAGMGHAGGTM 656

Query: 655 -GNGGSPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFISVSL 696
            G   SPLPDIF P+ PTQ+    + +SKKE+T+AFDFIS  L
Sbjct: 657 EGGYSSPLPDIFHPHIPTQSPTAVMTSSKKEETKAFDFISDHL 699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147838869\|emb\|CAN70334.1\| hypothetical protein VITISV_011432 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224054388\|ref\|XP_002298235.1\| predicted protein [Populus trichocarpa] gi\|222845493\|gb\|EEE83040.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255549890\|ref\|XP_002515996.1\| conserved hypothetical protein [Ricinus communis] gi\|223544901\|gb\|EEF46416.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356526101\|ref\|XP_003531658.1\| PREDICTED: VHS domain-containing protein At3g16270-like [Glycine max]	Back alignment and taxonomy information

>gi\|356522998\|ref\|XP_003530129.1\| PREDICTED: VHS domain-containing protein At3g16270-like [Glycine max]	Back alignment and taxonomy information

>gi\|357513387\|ref\|XP_003626982.1\| VHS domain-containing protein [Medicago truncatula] gi\|355521004\|gb\|AET01458.1\| VHS domain-containing protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449466679\|ref\|XP_004151053.1\| PREDICTED: VHS domain-containing protein At3g16270-like [Cucumis sativus] gi\|449526587\|ref\|XP_004170295.1\| PREDICTED: VHS domain-containing protein At3g16270-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|9279710\|dbj\|BAB01267.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|2062175\|gb\|AAB63649.1\| hypothetical protein [Arabidopsis thaliana] gi\|227204457\|dbj\|BAH57080.1\| AT3G16270 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		700
TAIR\|locus:2094887		690	AT3G16270 [Arabidopsis thalian	0.96	0.973	0.564	3.1e-186
RGD\|1307410		569	Enthd2 "ENTH domain containing	0.162	0.200	0.333	2.7e-08
MGI\|MGI:1926027		573	Enthd2 "ENTH domain containing	0.162	0.198	0.333	2.7e-08
UNIPROTKB\|Q96N21		525	ENTHD2 "AP-4 complex accessory	0.305	0.407	0.267	3.3e-07

TAIR\|locus:2094887 AT3G16270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1806 (640.8 bits), Expect = 3.1e-186, P = 3.1e-186
 Identities = 394/698 (56%), Positives = 473/698 (67%)

Query:     1 MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLE 60
             MD+SRRAVESYWRSRMID  TSDEDKV PVYKLEEIC+LLRSSHVSI KE S+FILKRL+
Sbjct:     1 MDTSRRAVESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLD 60

Query:    61 HKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRD 120
             +KSP+VKQKALRLIKY+VGKSG++FRREMQR+S  VR LFHYKG  DPLKGDALNKAVR+
Sbjct:    61 NKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE 120

Query:   121 MAHEAISAIFSEENKPAPVEDLSLNKRIQGFGNTNFEMPSEDKKSFLSEVVGLGSASIKQ 180
              AHE ISAIFSEEN   P    S+N+RI+GFGNTNF++PS D KSFLSEVVG+GSASIKQ
Sbjct:   121 TAHETISAIFSEENGTKPAAPESINRRIEGFGNTNFQVPSNDNKSFLSEVVGIGSASIKQ 180

Query:   181 GLSSFAQGNSMRKNENGSYRSPNLRRSLTIENDYSDRYEPVELRNETQGGYDISKNVAGG 240
             G+S+FAQG+  +KNENGS          ++  +  +      ++    G Y  SKN  GG
Sbjct:   181 GISNFAQGHLPKKNENGSSSYRGPNLHRSLTMENENFSRYDPVKLGKDGNYGTSKNTTGG 240

Query:   241 SWNQDSRVLKEDRLNGDSSASY-TGSKTREEKLLETIVTYGGVRLQPTRDAIQVFLVEAA 299
             SW   S    E      SSAS    SKTREEKLLETIVT GGVRLQPTRDA+ VF++EAA
Sbjct:   241 SWGHASGEASE------SSASVRVESKTREEKLLETIVTSGGVRLQPTRDALHVFILEAA 294

Query:   300 KLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCS 359
             K+DA+A+S AL+ KL SP+WQVRMKA+CVLE+ILRKK+DE FSI+ +YF EN D + +C+
Sbjct:   295 KMDAVALSIALDGKLHSPMWQVRMKALCVLEAILRKKEDENFSIVHTYFSENLDAIQRCA 354

Query:   360 ESPQSSLREKANKVLSLLGEEQAGGLVSGSERSVKAETTTVVQMPDLIDTADPEDHSETN 419
             ESPQSSLREKANKVLSLL   Q+ GL+S S+ +VK E    V +PDLIDT D +D    N
Sbjct:   355 ESPQSSLREKANKVLSLLNGGQSSGLMSSSDNTVKREAA--VDLPDLIDTGDSDD--TLN 410

Query:   420 NYATNPSDQNISNLSTSSTPLIDDLFTDSLGTGANNSEQKNADDPFADVLFHTSEGKEHV 479
             N   N  D   S ++T+   + DD F DS   G ++SE+K  DDPFADV FH +E KE  
Sbjct:   411 NL--NAIDTG-STVATAGPLMDDDWFGDSSDIGLSSSEKKTDDDPFADVSFHPNEEKESA 467

Query:   480 EDLFSGMTVDSKPVASGNLLAADKSGSEPFDDIFGSHTEILPKQENQKNNFNDLMAGFSI 539
             +DLFSGMTV  K  A G     D      FD +FGS  ++  + ++ KN  NDLM  FSI
Sbjct:   468 DDLFSGMTVGEKSAAVGGNHVPDL-----FD-MFGSTAKLEAEPKDAKN-INDLMGSFSI 520

Query:   540 NEDQLKPEGSSAG-VPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNANPFPFGTMPY 598
             +E+    +GSS+  +P                                N    P G MP+
Sbjct:   521 DENNSNQKGSSSSTLPQDLFAMPSTTSHQAPENPVGGILGSQNPGFIQNTM-LPGGVMPF 579

Query:   599 NIPAGMTLNPSIASQPMNYSAMGNLFAQQQ-FLAAMSNLQHIGNLNVHNSGAANLVGGNG 657
             N P GM +NP+ ASQP+NY+AM +L AQQQ +L  MSN Q  GNLN   SG    +G +G
Sbjct:   580 NFPQGMMMNPAFASQPLNYAAMASLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSMGTSG 639

Query:   658 G--SPLPDIFQPNFPTQASMPALNNSKKEDTRAFDFIS 693
             G  S LPDIFQPNF  QA    +N SKKEDTRAFDFIS
Sbjct:   640 GNQSALPDIFQPNFGNQAPTSTMNGSKKEDTRAFDFIS 677

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

RGD\|1307410 Enthd2 "ENTH domain containing 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1926027 Enthd2 "ENTH domain containing 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96N21 ENTHD2 "AP-4 complex accessory subunit tepsin" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5H4	Y3627_ARATH	No assigned EC number	0.5911	0.9628	0.9768	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		700
cd03572		122	cd03572, ENTH_epsin_related, ENTH domain, Epsin Re	2e-48
cd00197		115	cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain	9e-27
smart00288		133	smart00288, VHS, Domain present in VPS-27, Hrs and	4e-20

>gnl\|CDD\|239628 cd03572, ENTH_epsin_related, ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain	Back alignment and domain information

 Score =  165 bits (420), Expect = 2e-48
 Identities = 59/123 (47%), Positives = 84/123 (68%), Gaps = 1/123 (0%)

Query: 12  WRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKAL 71
            R  ++  ATSD+D+ TP Y  EEI +L R S V   +E+ +++LKRL+  SP VK K L
Sbjct: 1   MRRSLLSKATSDDDEPTPGYLYEEIAKLTRKS-VGSCQELLEYLLKRLKRSSPHVKLKVL 59

Query: 72  RLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131
           ++IK+   K  +DF+RE+QR+SA +R+  +YKG  DPLKGD+LN+ VR+ A E I AIFS
Sbjct: 60  KIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119

Query: 132 EEN 134
             +
Sbjct: 120 YSS 122

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding. Length = 122

>gnl\|CDD\|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain	Back alignment and domain information

>gnl\|CDD\|197630 smart00288, VHS, Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		700
cd03572		122	ENTH_epsin_related ENTH domain, Epsin Related fami	100.0
PF01417		125	ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E	99.94
cd03571		123	ENTH_epsin ENTH domain, Epsin family; The epsin (E	99.89
KOG2056		336	consensus Equilibrative nucleoside transporter pro	99.84
smart00273		127	ENTH Epsin N-terminal homology (ENTH) domain.	99.65
cd00197		115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	99.65
KOG2057		499	consensus Predicted equilibrative nucleoside trans	99.57
cd03564		117	ANTH_AP180_CALM ANTH domain family; composed of ad	98.99
smart00288		133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	98.2
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	98.1
PF01417		125	ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E	98.07
cd03561		133	VHS VHS domain family; The VHS domain is present i	98.05
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	98.04
cd03567		139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	97.99
cd03569		142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	97.81
cd00197		115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	97.76
cd03571		123	ENTH_epsin ENTH domain, Epsin family; The epsin (E	97.72
cd03565		141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	97.63
PF07651		280	ANTH: ANTH domain; InterPro: IPR011417 AP180 is an	97.49
KOG2199		462	consensus Signal transducing adaptor protein STAM/	97.28
KOG2056		336	consensus Equilibrative nucleoside transporter pro	97.25
KOG1087		470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	97.12
smart00273		127	ENTH Epsin N-terminal homology (ENTH) domain.	96.76
KOG0251		491	consensus Clathrin assembly protein AP180 and rela	96.74
cd03572		122	ENTH_epsin_related ENTH domain, Epsin Related fami	96.33
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	95.86
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	95.54
cd03561		133	VHS VHS domain family; The VHS domain is present i	95.5
smart00288		133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	95.41
cd03567		139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	94.72
cd03569		142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	94.71
cd03565		141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	93.89
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	90.56
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	89.6
cd03562		114	CID CID (CTD-Interacting Domain) domain family; CI	89.27
cd03564		117	ANTH_AP180_CALM ANTH domain family; composed of ad	87.54
KOG1818		634	consensus Membrane trafficking and cell signaling	87.46
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	87.37
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	86.32
KOG1087		470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	84.39

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain	Back alignment and domain information

Probab=100.00  E-value=4.3e-45  Score=338.69  Aligned_cols=121  Identities=48%  Similarity=0.692  Sum_probs=117.5

Q ss_pred             HHHhhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHH
Q 005356           12 WRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQR   91 (700)
Q Consensus        12 ~~~~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrr   91 (700)
                      |++++|++|||||+||||||+|+|||++|+++.. .|++|||||++||++++||||+||||||||||++|+++|++|+|+
T Consensus         1 ~~~~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~-~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~   79 (122)
T cd03572           1 MRRSLLSKATSDDDEPTPGYLYEEIAKLTRKSVG-SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQR   79 (122)
T ss_pred             CcHHHHHHHhcCCCCCCchHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            5789999999999999999999999999999875 579999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCC
Q 005356           92 HSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE  133 (700)
Q Consensus        92 ns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~d~  133 (700)
                      |+++||+|++|+|+|||++||++|++||++|+||+++||+++
T Consensus        80 ~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          80 NSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             hHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999965

>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins	Back alignment and domain information

>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis	Back alignment and domain information

>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]	Back alignment and domain information

>smart00273 ENTH Epsin N-terminal homology (ENTH) domain	Back alignment and domain information

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain	Back alignment and domain information

>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]	Back alignment and domain information

>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins	Back alignment and domain information

>smart00288 VHS Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins	Back alignment and domain information

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins	Back alignment and domain information

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)	Back alignment and domain information

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain	Back alignment and domain information

>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis	Back alignment and domain information

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein	Back alignment and domain information

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits	Back alignment and domain information

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]	Back alignment and domain information

>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]	Back alignment and domain information

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00273 ENTH Epsin N-terminal homology (ENTH) domain	Back alignment and domain information

>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)	Back alignment and domain information

>smart00288 VHS Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins	Back alignment and domain information

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)	Back alignment and domain information

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1	Back alignment and domain information

>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins	Back alignment and domain information

>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		700
1vdy_A		140	Nmr Structure Of The Hypothetical Enth-Vhs Domain A		9e-57

>pdb|1VDY|A Chain A, Nmr Structure Of The Hypothetical Enth-Vhs Domain At3g16270 From Arabidopsis Thaliana Length = 140

Back alignment and structure

Iteration: 1

Score = 218 bits (555), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 103/128 (80%), Positives = 113/128 (88%) Query: 11 YWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKA 70 YWRSRMID TSDEDKV PVYKLEEIC+LLRSSHVSI KE S+FILKRL++KSP+VKQKA Sbjct: 10 YWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKA 69 Query: 71 LRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 LRLIKY+VGKSG++FRREMQR+S VR LFHYKG DPLKGDALNKAVR+ AHE ISAIF Sbjct: 70 LRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 Query: 131 SEENKPAP 138 SEEN P Sbjct: 130 SEENGSGP 137

PyMOL of 1vdy

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		700
1vdy_A		140	Hypothetical protein (RAFL09-17-B18); structural g	4e-49
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1inz_A		148	EPS15-interacting portein(epsin); alpha-helix, rik	2e-06
3g2s_A		149	C-terminal fragment of sortilin-related receptor;	7e-06
3ldz_A		140	STAM-1, signal transducing adapter molecule 1; ubi	4e-05
1mhq_A		148	ADP-ribosylation factor binding protein GGA2; supe	4e-05
1juq_A		171	ADP-ribosylation factor binding protein GGA3; prot	1e-04
1eyh_A		144	Epsin; superhelix of helices, cell cycle; 1.56A {R	2e-04
3onk_A		150	Epsin-3, ENT3; helix, protein transport; 2.09A {Sa	4e-04
3zyq_A		226	Hepatocyte growth factor-regulated tyrosine kinas	5e-04

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Length = 140	Back alignment and structure

 Score =  167 bits (425), Expect = 4e-49
 Identities = 107/136 (78%), Positives = 118/136 (86%)

Query: 3   SSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHK 62
           SS  + ESYWRSRMID  TSDEDKV PVYKLEEIC+LLRSSHVSI KE S+FILKRL++K
Sbjct: 2   SSGSSGESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK 61

Query: 63  SPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMA 122
           SP+VKQKALRLIKY+VGKSG++FRREMQR+S  VR LFHYKG  DPLKGDALNKAVR+ A
Sbjct: 62  SPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETA 121

Query: 123 HEAISAIFSEENKPAP 138
           HE ISAIFSEEN   P
Sbjct: 122 HETISAIFSEENGSGP 137

PyMOL of 1vdy

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148	Back alignment and structure

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Length = 149	Back alignment and structure

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} Length = 140	Back alignment and structure

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Length = 148	Back alignment and structure

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Length = 171	Back alignment and structure

>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144	Back alignment and structure

>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Length = 150	Back alignment and structure

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		700
1vdy_A		140	Hypothetical protein (RAFL09-17-B18); structural g	100.0
3onk_A		150	Epsin-3, ENT3; helix, protein transport; 2.09A {Sa	99.88
1inz_A		148	EPS15-interacting portein(epsin); alpha-helix, rik	99.87
1xgw_A		176	Epsin 4; ENTH, enthoprotin, clathrin-associated, e	99.87
1eyh_A		144	Epsin; superhelix of helices, cell cycle; 1.56A {R	99.87
3zym_A		310	Phosphatidylinositol-binding clathrin assembly PR	98.67
3zyl_A		271	Phosphatidylinositol-binding clathrin assembly PR;	98.62
1juq_A		171	ADP-ribosylation factor binding protein GGA3; prot	98.11
3g2s_A		149	C-terminal fragment of sortilin-related receptor;	98.1
1mhq_A		148	ADP-ribosylation factor binding protein GGA2; supe	98.1
1x5b_A		163	Signal transducing adaptor molecule 2; VHS domain,	98.08
3ldz_A		140	STAM-1, signal transducing adapter molecule 1; ubi	98.04
1hx8_A		299	Synapse-enriched clathrin adaptor protein LAP; all	98.02
3zyq_A		226	Hepatocyte growth factor-regulated tyrosine kinas	97.79
1elk_A		157	Target of MYB1; superhelix of helices, endocytosis	97.78
1dvp_A		220	HRS, hepatocyte growth factor-regulated tyrosine k	97.77
1eyh_A		144	Epsin; superhelix of helices, cell cycle; 1.56A {R	97.69
1xgw_A		176	Epsin 4; ENTH, enthoprotin, clathrin-associated, e	97.65
1inz_A		148	EPS15-interacting portein(epsin); alpha-helix, rik	97.62
3onk_A		150	Epsin-3, ENT3; helix, protein transport; 2.09A {Sa	97.51
1vdy_A		140	Hypothetical protein (RAFL09-17-B18); structural g	97.44
3rru_A		152	TOM1L1 protein; structural genomics, PSI-biology,	97.23
1x5b_A		163	Signal transducing adaptor molecule 2; VHS domain,	95.97
1mhq_A		148	ADP-ribosylation factor binding protein GGA2; supe	95.31
1juq_A		171	ADP-ribosylation factor binding protein GGA3; prot	95.1
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.06
3ldz_A		140	STAM-1, signal transducing adapter molecule 1; ubi	94.93
3g2s_A		149	C-terminal fragment of sortilin-related receptor;	94.93
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	94.88
1elk_A		157	Target of MYB1; superhelix of helices, endocytosis	94.82
1dvp_A		220	HRS, hepatocyte growth factor-regulated tyrosine k	94.01
3rru_A		152	TOM1L1 protein; structural genomics, PSI-biology,	93.92
3zyq_A		226	Hepatocyte growth factor-regulated tyrosine kinas	93.71
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	92.33
1sz9_A		144	PCF11 protein; RNA polymerase II CTD interacting d	88.41
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	88.02
1sz9_A		144	PCF11 protein; RNA polymerase II CTD interacting d	87.5
4flb_A		132	Regulation of nuclear PRE-mRNA domain-containing;	86.97
2b4j_C		98	PC4 and SFRS1 interacting protein; HIV, integratio	84.51
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	81.72
4fu3_A		135	Regulation of nuclear PRE-mRNA domain-containing 1	80.79

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A	Back alignment and structure

Probab=100.00  E-value=5.3e-47  Score=357.52  Aligned_cols=136  Identities=79%  Similarity=1.164  Sum_probs=131.2

Q ss_pred             hhhHHHHHHHHHhhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCC
Q 005356            3 SSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSG   82 (700)
Q Consensus         3 ~~r~~v~~~~~~~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs   82 (700)
                      ++|||||+|||.+||++||+|||||||||+|+|||++|+++++++|+|||+||++||+++++|||+||||||+|||.+|+
T Consensus         2 ~~~~~~~~~~~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs   81 (140)
T 1vdy_A            2 SSGSSGESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG   81 (140)
T ss_dssp             CCCCSCTHHHHHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC
Confidence            68999999999999999999999999999999999999999877889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCCCC
Q 005356           83 TDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPAP  138 (700)
Q Consensus        83 ~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~d~~~p~p  138 (700)
                      ++|++|+|+|+++||+|++|+|+|||++|+++|++||++||||+++||+++..++|
T Consensus        82 ~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~~~  137 (140)
T 1vdy_A           82 SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGSGP  137 (140)
T ss_dssp             HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSSCCCC
T ss_pred             HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999997765443

PyMOL of 1vdy

>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A	Back alignment and structure

>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1	Back alignment and structure

>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E	Back alignment and structure

>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A	Back alignment and structure

>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}	Back alignment and structure

>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*	Back alignment and structure

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*	Back alignment and structure

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*	Back alignment and structure

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2	Back alignment and structure

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B	Back alignment and structure

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0	Back alignment and structure

>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3	Back alignment and structure

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*	Back alignment and structure

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2	Back alignment and structure

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1	Back alignment and structure

>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A	Back alignment and structure

>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E	Back alignment and structure

>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1	Back alignment and structure

>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A	Back alignment and structure

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A	Back alignment and structure

>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}	Back alignment and structure

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B	Back alignment and structure

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2	Back alignment and structure

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0	Back alignment and structure

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2	Back alignment and structure

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1	Back alignment and structure

>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}	Back alignment and structure

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X	Back alignment and structure

>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}	Back alignment and structure

>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		700
d1eyha_		144	a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T	5e-10
d1hf8a2		131	a.118.9.3 (A:19-149) Clathrin assembly lymphoid my	3e-06
d1dvpa1		145	a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila mel	2e-05
d1mhqa_		143	a.118.9.2 (A:) ADP-ribosylation factor binding pro	9e-05
d1hx8a2		140	a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso	2e-04

>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (135), Expect = 5e-10
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 10/123 (8%)

Query: 16  MIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLE--HKSPVVKQKALRL 73
            +  ATS++        + EI +L  +       E+   I KRL    K+     KA+ L
Sbjct: 9   KVREATSNDPWGPSSSLMSEIADLTYNVVAF--SEIMSMIWKRLNDHGKNWRHVYKAMTL 66

Query: 74  IKYSVGKSGTDFRREMQRHSAVVRQL--FHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131
           ++Y +        ++ + +   V+ L  F Y  +     G      VR+ A + ++ +  
Sbjct: 67  MEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDR----DGKDQGVNVREKAKQLVALLRD 122

Query: 132 EEN 134
           E+ 
Sbjct: 123 EDR 125

PyMOL of d1eyha_

>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131	Back information, alignment and structure

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145	Back information, alignment and structure

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143	Back information, alignment and structure

>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		700
d1eyha_		144	Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.84
d1hx8a2		140	AP180 (Lap) {Fruit fly (Drosophila melanogaster) [	99.35
d1hf8a2		131	Clathrin assembly lymphoid myeloid leukaemia prote	99.29
d1mhqa_		143	ADP-ribosylation factor binding protein Gga2 {Huma	98.0
d1juqa_		151	ADP-ribosylation factor binding protein Gga3 {Huma	98.0
d1ujka_		145	ADP-ribosylation factor binding protein Gga1 {Huma	97.95
d1dvpa1		145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	97.87
d1elka_		153	Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1eyha_		144	Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.42
d1dvpa1		145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	95.86
d1mhqa_		143	ADP-ribosylation factor binding protein Gga2 {Huma	95.86
d1ujka_		145	ADP-ribosylation factor binding protein Gga1 {Huma	95.42
d1elka_		153	Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	95.16
d1juqa_		151	ADP-ribosylation factor binding protein Gga3 {Huma	94.5
d1hx8a2		140	AP180 (Lap) {Fruit fly (Drosophila melanogaster) [	92.13
d1hf8a2		131	Clathrin assembly lymphoid myeloid leukaemia prote	91.69
d1b3ua_		588	Constant regulatory domain of protein phosphatase	87.94
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	85.71
d2b4jc1		81	PC4 and SFRS1-interacting protein, PSIP1 {Human (H	85.24
d1szaa_		144	PCF11 protein {Baker's yeast (Saccharomyces cerevi	84.66
d1szaa_		144	PCF11 protein {Baker's yeast (Saccharomyces cerevi	83.06

>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=4.1e-21  Score=178.52  Aligned_cols=115  Identities=19%  Similarity=0.224  Sum_probs=105.8

Q ss_pred             hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCc--hHHHHHHHHHHHHhcCChhhHHHHHHh
Q 005356           15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPV--VKQKALRLIKYSVGKSGTDFRREMQRH   92 (700)
Q Consensus        15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~h--VKlKaLKILkyLc~~Gs~~F~r~lrrn   92 (700)
                      .+|++||++|+||||++.|+||++.|+++.  .+.+||++|.+||.+++.+  |.+|||.||.||+.+|+++|+.+++++
T Consensus         8 ~~v~~ATs~d~~~p~~k~~~~I~~~t~~~~--~~~~i~~~L~kRl~~~~k~Wrvv~K~L~ll~~Ll~~G~~~~v~~~~~~   85 (144)
T d1eyha_           8 IKVREATSNDPWGPSSSLMSEIADLTYNVV--AFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKEN   85 (144)
T ss_dssp             HHHHHHTCSSSSCCCHHHHHHHHHHTTSHH--HHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHhcChh--hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            789999999999999999999999999763  4789999999999977644  459999999999999999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCC
Q 005356           93 SAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE  133 (700)
Q Consensus        93 s~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~d~  133 (700)
                      .+.|+.+..|.+.++  +|.+.+..||+.|++|+++|++++
T Consensus        86 ~~~i~~l~~f~~~d~--~g~d~g~~VR~kA~~l~~Ll~d~~  124 (144)
T d1eyha_          86 MYAVQTLKDFQYVDR--DGKDQGVNVREKAKQLVALLRDED  124 (144)
T ss_dssp             HHHHHGGGGCCCBCT--TSCBCHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHhhhcCcccCc--cccchhHHHHHHHHHHHHHhcCHH
Confidence            999999999998755  999999999999999999999843

PyMOL of d1eyha_

>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein, PSIP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure