Citrus Sinensis ID: 005362
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 700 | 2.2.26 [Sep-21-2011] | |||||||
| Q758M7 | 756 | Protein transport protein | yes | no | 0.807 | 0.747 | 0.233 | 4e-23 | |
| Q6CPH3 | 760 | Protein transport protein | yes | no | 0.818 | 0.753 | 0.239 | 3e-21 | |
| Q9SFU0 | 1038 | Protein transport protein | no | no | 0.678 | 0.457 | 0.222 | 2e-20 | |
| Q9USS7 | 891 | Uncharacterized protein C | yes | no | 0.515 | 0.405 | 0.242 | 2e-20 | |
| Q6BQT6 | 746 | Protein transport protein | yes | no | 0.818 | 0.768 | 0.243 | 3e-20 | |
| A3GFA2 | 749 | Protein transport protein | yes | no | 0.818 | 0.765 | 0.231 | 8e-19 | |
| P15303 | 768 | Protein transport protein | yes | no | 0.527 | 0.480 | 0.259 | 1e-18 | |
| Q54U61 | 1013 | Protein transport protein | no | no | 0.51 | 0.352 | 0.238 | 2e-18 | |
| A5DA00 | 748 | Protein transport protein | N/A | no | 0.832 | 0.779 | 0.225 | 6e-18 | |
| A6QNT8 | 1099 | Protein transport protein | yes | no | 0.517 | 0.329 | 0.253 | 7e-18 |
| >sp|Q758M7|SEC23_ASHGO Protein transport protein SEC23 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC23 PE=3 SV=1 | Back alignment and function desciption |
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Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 162/693 (23%), Positives = 275/693 (39%), Gaps = 128/693 (18%)
Query: 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAA---PVYGSDGHMLPRCENCYA 58
VR + + FP+ + +P G TP +E PV H C A
Sbjct: 11 GVRFSWNVFPASRTDANKNVVPVGCLYTPLKEIEELAVVSYNPVVCGGPH-------CKA 63
Query: 59 YFNTYCELEQWA--WTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEE 116
N YCE++ + W C LCG+ N L Q A + AE+ S+ + E
Sbjct: 64 VLNPYCEIDVRSNVWACPLCGTRNHLP-QHYANMSQEAMPAELNSTTV------EYITNR 116
Query: 117 TMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIP 176
+Q P++ VD+++ EE L+ + ++ +L +P AL GL T+ + + L+D+
Sbjct: 117 PVQVAPIFFYVVDVTAEEENLQALKDSIITSLSLLPPNALVGLITYGNVVQLHDLSCTAI 176
Query: 177 VVKNVFIPSDTEDTLSLELE-----------------DVMP--LSQFLAPVETFKENITS 217
NVF D E L +E + P L++F P+E + +T
Sbjct: 177 DKCNVF-RGDREYQLQQLVEMLTGEKSGGNLSAGPQMKITPFSLNRFFLPLEHVEFKLTQ 235
Query: 218 ALETLRPTTSWE--------RTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFAL 269
LE LRP W R G+A + +L+ G +A
Sbjct: 236 LLENLRP-DQWTIPPGHRPLRATGSALNIATLLLQGCYRHVA------------------ 276
Query: 270 ARVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DADRALLPEQT-PFYKDLAAVAVQAGV 327
AR+ F SGP G + + + S + D+D A ++ FY LA A + G
Sbjct: 277 ARICLFASGPGTVAPGMIVSSELKDPLRSHHDIDSDNAKHHKKACKFYNQLAERAAENGH 336
Query: 328 CVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAFN 381
+DIFA + ++ +K L+ +GG L L + + Q R+ S+ AFN
Sbjct: 337 TIDIFAGCYDQVGMSEMKKLTDSTGGVLLLTDAFSTAIFKQSFIRLFSKDEEGYLTMAFN 396
Query: 382 CIMRLRTSSEFKPGHSYGHFFP-DPQYENVQ------------HIICCDSYATYAYDFDF 428
M ++TS++ K GH P + +NV + + +YA F+
Sbjct: 397 ASMCIKTSADLKLQGLIGHASPVNVDAQNVSDSEIGIGGTSTWKMASLSPHHSYAIFFEI 456
Query: 429 ANAAGFARHTSEQPMLQ-----IAFQY---TVVVPPEELSSEGL---GSVILASLEQGVR 477
AN A A ++P L A+Q+ T V ++++ L I AS +Q
Sbjct: 457 ANTAATASLMGDRPKLAYTQFITAYQHASGTNRVRVTTVANQMLPFGNPAIAASFDQ--- 513
Query: 478 EGRMLLHDWLVILTAQYNEA-----------FKLVQ----HNIGNSVTSQIDVEFLQCPQ 522
E +L + + A ++ KL Q +N G+ + F P
Sbjct: 514 EAAAVLMARVAVDKADSDDGADVIRWIDRTLIKLCQKYADYNKGDPRS------FRLAPN 567
Query: 523 LQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDK 582
P+ ++ L R+ L PD + + +F+ + ++ + P LTS+S ++
Sbjct: 568 FSLYPQFIYYLRRSQFLSVFNNS--PDETAFYRHIFTREDTTNSLIMIQPTLTSFSMEEE 625
Query: 583 QAFPRHSLSRAALITSGSPIFLLDAFTTIIVFY 615
P+ L + + + I LLD F I++++
Sbjct: 626 ---PQPVLLDSVSVKPNT-ILLLDTFFYILIYH 654
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Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811) |
| >sp|Q6CPH3|SEC23_KLULA Protein transport protein SEC23 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9USS7|YNB3_SCHPO Uncharacterized protein C4.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4.03c PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6BQT6|SEC23_DEBHA Protein transport protein SEC23 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|A3GFA2|SEC23_PICST Protein transport protein SEC23 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=SEC23 PE=3 SV=2 | Back alignment and function description |
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| >sp|P15303|SEC23_YEAST Protein transport protein SEC23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC23 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q54U61|SEC24_DICDI Protein transport protein SEC24 OS=Dictyostelium discoideum GN=sec24 PE=3 SV=1 | Back alignment and function description |
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| >sp|A5DA00|SEC23_PICGU Protein transport protein SEC23 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SEC23 PE=3 SV=3 | Back alignment and function description |
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| >sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 700 | ||||||
| 225464936 | 744 | PREDICTED: protein transport protein Sec | 1.0 | 0.940 | 0.802 | 0.0 | |
| 359479507 | 760 | PREDICTED: protein transport protein Sec | 1.0 | 0.921 | 0.785 | 0.0 | |
| 255565655 | 740 | expressed protein, putative [Ricinus com | 0.994 | 0.940 | 0.819 | 0.0 | |
| 359479509 | 740 | PREDICTED: protein transport protein Sec | 0.994 | 0.940 | 0.795 | 0.0 | |
| 224131820 | 744 | predicted protein [Populus trichocarpa] | 1.0 | 0.940 | 0.807 | 0.0 | |
| 224104861 | 744 | predicted protein [Populus trichocarpa] | 1.0 | 0.940 | 0.799 | 0.0 | |
| 147785809 | 746 | hypothetical protein VITISV_037581 [Viti | 0.991 | 0.930 | 0.765 | 0.0 | |
| 356542764 | 747 | PREDICTED: protein transport protein SEC | 1.0 | 0.937 | 0.776 | 0.0 | |
| 356539252 | 747 | PREDICTED: protein transport protein SEC | 1.0 | 0.937 | 0.772 | 0.0 | |
| 449443450 | 742 | PREDICTED: protein transport protein SEC | 1.0 | 0.943 | 0.773 | 0.0 |
| >gi|225464936|ref|XP_002275292.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 1 [Vitis vinifera] gi|296084904|emb|CBI28313.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1246 bits (3224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/744 (80%), Positives = 656/744 (88%), Gaps = 44/744 (5%)
Query: 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYF 60
MAVRAT+SRFP DPDAQE SGLPWGVTVTPFATKDENG +PVYGSDGH+LPRCENC+AYF
Sbjct: 1 MAVRATMSRFPMDPDAQEGSGLPWGVTVTPFATKDENGNSPVYGSDGHLLPRCENCWAYF 60
Query: 61 NTYCELEQWAWTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQA 120
NTYCELEQWAW CSLCG+LNGL+S+AI RY+ PQSCAEM+SSFIDL+LP+EGSE E MQA
Sbjct: 61 NTYCELEQWAWNCSLCGTLNGLTSEAITRYSQPQSCAEMMSSFIDLELPVEGSEGEAMQA 120
Query: 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKN 180
RPVYVAA+DLSSSEEFLEL +S+L AALEA+ GALFGLATFSHKIGLYDVQG +PVVKN
Sbjct: 121 RPVYVAAIDLSSSEEFLELIKSSLLAALEALGPGALFGLATFSHKIGLYDVQGPVPVVKN 180
Query: 181 VFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDG 240
VF+P+D++ +L +ELEDVMPL FLAPVET K+ I SALETL+PTTSWERT+ A QGLDG
Sbjct: 181 VFVPADSDASLPIELEDVMPLLSFLAPVETCKDRIASALETLKPTTSWERTSAAGQGLDG 240
Query: 241 VLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKG 300
+L+GGRGFG+AME+LFNYLGSEYG+TFALARVFAFLSGPPD+GAGQLDTRRYGEQYASKG
Sbjct: 241 ILLGGRGFGVAMEALFNYLGSEYGSTFALARVFAFLSGPPDYGAGQLDTRRYGEQYASKG 300
Query: 301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSS 360
EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFA+TNEYTDLASLKFLSIESGGSLFLYS+
Sbjct: 301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGSLFLYSN 360
Query: 361 TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYA 420
TDDSTLPQD+YRMLSRPYAF CI+RLRTSSEF+PG+SYGHFFPDPQYENVQHIICCDSY
Sbjct: 361 TDDSTLPQDMYRMLSRPYAFGCILRLRTSSEFRPGNSYGHFFPDPQYENVQHIICCDSYV 420
Query: 421 TYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEG----------------- 463
TYAYDFDFAN GF+RHTSE PMLQIAFQYTVVVPP+ELS+ G
Sbjct: 421 TYAYDFDFANTTGFSRHTSEPPMLQIAFQYTVVVPPDELSTPGSVSASRSKHCLKRRLRI 480
Query: 464 ---------------------------LGSVILASLEQGVREGRMLLHDWLVILTAQYNE 496
+ VILASLEQGVREGRMLLHDWLVIL AQYN+
Sbjct: 481 RTLQYLSAQNSSELYDSVDPEVVLSVLVHKVILASLEQGVREGRMLLHDWLVILIAQYND 540
Query: 497 AFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQC 556
A+KL+Q+ G+S T+ +DV F QCPQLQ LPRLVFALLRNPLLRFHEEGVHPDYRIYLQC
Sbjct: 541 AYKLLQYRNGSSTTAHVDVAFSQCPQLQPLPRLVFALLRNPLLRFHEEGVHPDYRIYLQC 600
Query: 557 LFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYS 616
LFSALEPSSL RAVYP+LTSYS PDKQA+PRHSLSRAALITSGSPIF LDAFTT+IVFYS
Sbjct: 601 LFSALEPSSLHRAVYPVLTSYSAPDKQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYS 660
Query: 617 STADPTLPFPPPQDCLLRTTINKMKQERSITPKLIFIRGGQDDATIFENYLIEEQDVDGS 676
STADP LP+PPP DCLLRTTINK+KQERSITPKL+FIRGGQDDAT FENYLIEEQDV+GS
Sbjct: 661 STADPILPYPPPHDCLLRTTINKLKQERSITPKLLFIRGGQDDATAFENYLIEEQDVEGS 720
Query: 677 GLTSVMGFVSFLEEISQSVVEYMK 700
GLTSVMGFVSFLE+I++SV+EYMK
Sbjct: 721 GLTSVMGFVSFLEDITRSVLEYMK 744
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479507|ref|XP_003632282.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255565655|ref|XP_002523817.1| expressed protein, putative [Ricinus communis] gi|223536905|gb|EEF38543.1| expressed protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359479509|ref|XP_003632283.1| PREDICTED: protein transport protein Sec24-like At3g07100 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224131820|ref|XP_002328116.1| predicted protein [Populus trichocarpa] gi|222837631|gb|EEE75996.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224104861|ref|XP_002313596.1| predicted protein [Populus trichocarpa] gi|222850004|gb|EEE87551.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|147785809|emb|CAN62128.1| hypothetical protein VITISV_037581 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356542764|ref|XP_003539835.1| PREDICTED: protein transport protein SEC24-1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356539252|ref|XP_003538113.1| PREDICTED: protein transport protein SEC24-1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449443450|ref|XP_004139490.1| PREDICTED: protein transport protein SEC24-1-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 700 | ||||||
| TAIR|locus:2038633 | 745 | AT2G27460 "AT2G27460" [Arabido | 0.715 | 0.672 | 0.742 | 1.6e-301 | |
| DICTYBASE|DDB_G0271044 | 782 | DDB_G0271044 "putative protein | 0.311 | 0.278 | 0.357 | 1.5e-56 | |
| FB|FBgn0262126 | 1193 | gho "ghost" [Drosophila melano | 0.208 | 0.122 | 0.346 | 1.5e-16 | |
| TAIR|locus:2098545 | 1038 | ERMO2 "AT3G07100" [Arabidopsis | 0.522 | 0.352 | 0.226 | 1.4e-14 | |
| RGD|1311720 | 1034 | Sec24d "SEC24 family, member D | 0.474 | 0.321 | 0.233 | 7.9e-14 | |
| TAIR|locus:2100202 | 1096 | CEF "AT3G44340" [Arabidopsis t | 0.211 | 0.135 | 0.289 | 8.7e-14 | |
| ZFIN|ZDB-GENE-030131-4487 | 1241 | sec24c "SEC24 family, member C | 0.22 | 0.124 | 0.296 | 9e-14 | |
| ZFIN|ZDB-GENE-070117-2501 | 1029 | sec24d "SEC24 family, member D | 0.485 | 0.330 | 0.214 | 3.2e-13 | |
| UNIPROTKB|E1BUD8 | 1119 | SEC24C "Uncharacterized protei | 0.18 | 0.112 | 0.292 | 3.3e-13 | |
| UNIPROTKB|E1BSP8 | 993 | SEC24D "Uncharacterized protei | 0.22 | 0.155 | 0.290 | 3.7e-13 |
| TAIR|locus:2038633 AT2G27460 "AT2G27460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1977 (701.0 bits), Expect = 1.6e-301, Sum P(2) = 1.6e-301
Identities = 383/516 (74%), Positives = 430/516 (83%)
Query: 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYF 60
MAVRATVSRFP D DAQEASGLPWG+TVTPFA KDENG P GS+GH+LPRCENCYAYF
Sbjct: 1 MAVRATVSRFPIDSDAQEASGLPWGLTVTPFAAKDENGIGPACGSNGHLLPRCENCYAYF 60
Query: 61 NTYCELEQWAWTXXXXXXXXXXXXQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQA 120
NTYCEL+QWAW AIARY++P S EM SSFIDL++PL+GSEEE QA
Sbjct: 61 NTYCELDQWAWNCSLCGTLNGLPSDAIARYSNPHSIPEMTSSFIDLEMPLDGSEEEMTQA 120
Query: 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKN 180
RPVYVAA+D+SSSEEFLELT+SAL AALEA+ GALFGL TFSHKIGLYDVQG IPVVKN
Sbjct: 121 RPVYVAAIDISSSEEFLELTKSALLAALEALSPGALFGLVTFSHKIGLYDVQGPIPVVKN 180
Query: 181 VFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDG 240
VFIP D E +LSLELEDVMPL QFLAPVET K+ I +ALETLRP TSWER+AGA QG+D
Sbjct: 181 VFIPPDGESSLSLELEDVMPLLQFLAPVETCKDRIAAALETLRPITSWERSAGAGQGMDS 240
Query: 241 VLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKG 300
VLMGGRGFG AME+LFNYLGSE+GNTFALARVFAFLSGPPD+G GQLDT RYGEQYASK
Sbjct: 241 VLMGGRGFGTAMEALFNYLGSEFGNTFALARVFAFLSGPPDYGRGQLDTSRYGEQYASKR 300
Query: 301 EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSS 360
DADRALLPEQTPFYKDLA +AVQ+GVCVD+FA+TNEYTDLASLKFLSIESGGSLFLYSS
Sbjct: 301 VDADRALLPEQTPFYKDLATIAVQSGVCVDLFAVTNEYTDLASLKFLSIESGGSLFLYSS 360
Query: 361 TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYA 420
TDDSTLPQD++RML+RPYAFNC++RLRTS+EFKPG+S+GHFFPDPQYEN+QHIICCDSYA
Sbjct: 361 TDDSTLPQDMFRMLNRPYAFNCVLRLRTSTEFKPGNSFGHFFPDPQYENLQHIICCDSYA 420
Query: 421 TYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSSEGLGSVILASLEQGVREGR 480
TYAYDF+FA+ GF+RH+ EQP++QIAFQYTVVVPPE LS+ + S +S G+
Sbjct: 421 TYAYDFEFADNTGFSRHSGEQPVVQIAFQYTVVVPPEGLSNSEMSS---SS------RGK 471
Query: 481 MLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVE 516
L L I T Q+ A HNI N + +D E
Sbjct: 472 HTLQRRLRIRTMQFGTA-----HNI-NEIYDSVDHE 501
|
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| DICTYBASE|DDB_G0271044 DDB_G0271044 "putative protein transport protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0262126 gho "ghost" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| TAIR|locus:2098545 ERMO2 "AT3G07100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| RGD|1311720 Sec24d "SEC24 family, member D (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-070117-2501 sec24d "SEC24 family, member D (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BUD8 SEC24C "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BSP8 SEC24D "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 700 | |||
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 2e-53 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 2e-30 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 2e-23 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 3e-19 | |
| cd01479 | 244 | cd01479, Sec24-like, Sec24-like: Protein and membr | 7e-17 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 1e-14 | |
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 7e-13 | |
| pfam04815 | 103 | pfam04815, Sec23_helical, Sec23/Sec24 helical doma | 4e-11 | |
| pfam04810 | 39 | pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | 4e-08 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 2e-04 |
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 2e-53
Identities = 79/263 (30%), Positives = 121/263 (46%), Gaps = 33/263 (12%)
Query: 119 QARPVYVAAVDLSSS---EEFLELTRSALQAALEAVP--SGALFGLATFSHKIGLYDVQG 173
PV+V +D+S E L+ + +L A+L+ +P A GL T+ + Y++
Sbjct: 1 PQPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSS 60
Query: 174 AIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAG 233
+ K +++ SD +D + +FL P+ K+ I LE L P T
Sbjct: 61 DLAQPK-MYVVSDLKDVF------LPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPT-- 111
Query: 234 AAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYG 293
R G A+++ F L TFA R+ F G P G G+L +R
Sbjct: 112 --------HRPERCLGPALQAAFLLLKG----TFAGGRIIVFQGGLPTVGPGKLKSREDK 159
Query: 294 EQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGG 353
E S + LL T FYK LA V++G+CVD+FA + +Y D+A+LK L+ +GG
Sbjct: 160 EPIRS---HDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGG 216
Query: 354 SLFLYSS----TDDSTLPQDIYR 372
++LY S D S QD+ R
Sbjct: 217 QVYLYDSFQAPNDGSKFKQDLQR 239
|
COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins. Length = 239 |
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain | Back alignment and domain information |
|---|
| >gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 700 | |||
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 100.0 | |
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| KOG1986 | 745 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 100.0 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 100.0 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 100.0 | |
| PF04815 | 103 | Sec23_helical: Sec23/Sec24 helical domain; InterPr | 99.68 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.55 | |
| PF04810 | 40 | zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: | 99.5 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 98.79 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.77 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 98.75 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 98.72 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.71 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.69 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.64 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.54 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.43 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 98.4 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 98.39 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 98.36 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 98.36 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 98.36 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 98.3 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.27 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 98.26 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 98.16 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 98.14 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 98.02 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 97.96 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 97.91 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 97.89 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 97.89 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 97.88 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.88 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.87 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 97.75 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 97.7 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 97.7 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 97.69 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.68 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 97.67 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 97.64 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 97.54 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 97.45 | |
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 97.29 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 97.28 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 97.25 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 97.23 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 97.1 | |
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 97.07 | |
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 96.83 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 96.08 | |
| KOG2884 | 259 | consensus 26S proteasome regulatory complex, subun | 95.07 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 94.87 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 94.21 | |
| cd01455 | 191 | vWA_F11C1-5a_type Von Willebrand factor type A (vW | 94.14 | |
| cd01457 | 199 | vWA_ORF176_type VWA ORF176 type: Von Willebrand fa | 93.56 | |
| PF03850 | 276 | Tfb4: Transcription factor Tfb4; InterPro: IPR0046 | 90.2 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 89.08 | |
| KOG2807 | 378 | consensus RNA polymerase II transcription initiati | 88.24 | |
| KOG2353 | 1104 | consensus L-type voltage-dependent Ca2+ channel, a | 85.34 | |
| COG5148 | 243 | RPN10 26S proteasome regulatory complex, subunit R | 85.0 | |
| TIGR00578 | 584 | ku70 ATP-dependent DNA helicase ii, 70 kDa subunit | 81.85 | |
| PF06707 | 205 | DUF1194: Protein of unknown function (DUF1194); In | 81.15 |
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-127 Score=1041.04 Aligned_cols=640 Identities=30% Similarity=0.506 Sum_probs=565.2
Q ss_pred CccccccCcCCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcccCcceeEecCceEec--ceEEEccCCC
Q 005362 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (700)
Q Consensus 1 ~~vR~T~~~~P~~~~~~~~~~lP~g~~v~Pf~~~~~~~~~p~~~~~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~ 78 (700)
+++|+|+++||.+.++++|++||||++|+||++.++.+ |..+.....|+||++||+||||||.|++ ++|+||+|+.
T Consensus 171 ~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~d~~--~~p~~~~~~IvRCr~CRtYiNPFV~fid~gr~WrCNlC~~ 248 (887)
T KOG1985|consen 171 SYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLDDID--PLPVITSTLIVRCRRCRTYINPFVEFIDQGRRWRCNLCGR 248 (887)
T ss_pred HHHHHHHHhCCccHHHHHhcCCCceEEEeecccccccC--CCCcccCCceeeehhhhhhcCCeEEecCCCceeeechhhh
Confidence 47999999999999999999999999999999876322 3334567889999999999999999985 7999999999
Q ss_pred CCCCChhhhcc-----cCCCCCCcccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHHh
Q 005362 79 LNGLSSQAIAR-----YTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEA 150 (700)
Q Consensus 79 ~N~~p~~~~~~-----~~~~~~~pEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~ 150 (700)
.|++|.+|..+ |.++.+|||+++++|||++|.||+.| +++|++|||+||||.++ |+|++++++|++.|+.
T Consensus 249 ~NdvP~~f~~~~~t~~~~~~~~RpEl~~s~vE~iAP~eYmlR--~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~ 326 (887)
T KOG1985|consen 249 VNDVPDDFDWDPLTGAYGDPYSRPELTSSVVEFIAPSEYMLR--PPQPAVYVFLIDVSISAIKSGYLETVARSLLENLDA 326 (887)
T ss_pred hcCCcHHhhcCccccccCCcccCccccceeEEEecCcccccC--CCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhc
Confidence 99999987543 66788999999999999999999987 57899999999999985 8999999999999999
Q ss_pred CC--CCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHHHhcCCCC
Q 005362 151 VP--SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALETLRPTT 226 (700)
Q Consensus 151 lp--~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~-~~p~-~~~l~~l~~~~~~i~~ll~~l~~~~ 226 (700)
|| ++++|||||||++||||++.++..++.++ ++.|+|| ++|. ++||+|+++||+.|+.+|+.|++++
T Consensus 327 lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm---------~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F 397 (887)
T KOG1985|consen 327 LPGDPRTRIGFITFDSTIHFYSVQGDLNQPQMM---------IVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMF 397 (887)
T ss_pred CCCCCcceEEEEEeeceeeEEecCCCcCCCcee---------eeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHH
Confidence 99 78999999999999999998887555443 4678888 4554 7899999999999999999999999
Q ss_pred CcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCCccccccccCcccCCCcchhhc
Q 005362 227 SWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRA 306 (700)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~ 306 (700)
+|++. .++|+|+||++|.++|+++| |||++|++++|+.|.|+|+.||+.+. ++++++..
T Consensus 398 ~~~~~------------t~~alGpALkaaf~li~~~G------Gri~vf~s~lPnlG~G~L~~rEdp~~---~~s~~~~q 456 (887)
T KOG1985|consen 398 QDTRS------------TGSALGPALKAAFNLIGSTG------GRISVFQSTLPNLGAGKLKPREDPNV---RSSDEDSQ 456 (887)
T ss_pred hhccC------------cccccCHHHHHHHHHHhhcC------CeEEEEeccCCCCCcccccccccccc---ccchhhhh
Confidence 88754 35899999999999999988 79999999999999999999976544 35677888
Q ss_pred cCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEEEEeCCCCCC------chhHHHHHHhccCcce
Q 005362 307 LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS------TLPQDIYRMLSRPYAF 380 (700)
Q Consensus 307 ~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~~~y~~~~~~------~l~~dl~~~l~~~~~~ 380 (700)
++.+++.|||+||.+|++.||+||+|+++.+|.|+|+|+.|++.|||.+|||++|++. +|.+||.|+|+|++||
T Consensus 457 lL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f~~s~p~~~~Kf~~el~r~Ltr~~~f 536 (887)
T KOG1985|consen 457 LLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSFDGSNPHDVLKFARELARYLTRKIGF 536 (887)
T ss_pred ccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEccCCCCCCHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999855 7899999999999999
Q ss_pred eeEEEEecCCCceeeeeeeccccCCCCCcceeeeccCCCceEEEEEEEecCCCCCCCCCCCcEEEEEEeeeeccCccccc
Q 005362 381 NCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELS 460 (700)
Q Consensus 381 ~a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~i~~~d~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt~~~g~~~~~ 460 (700)
||+||||||+|++++.+||||+.++ .++..++.+++|+++++.+++++ ++ .....+||+|++||...|+||+|
T Consensus 537 eaVmRiR~S~gl~~~~f~GnFF~RS--tDLla~~~v~~D~sy~~qisiEe--sl---~~~~~~fQvAlLyT~~~GERRIR 609 (887)
T KOG1985|consen 537 EAVMRIRCSTGLRMSSFFGNFFVRS--TDLLALPNVNPDQSYAFQISIEE--SL---TTGFCVFQVALLYTLSKGERRIR 609 (887)
T ss_pred heeEEeeccccccccceecccccCc--HHHhcccCCCCCccceEEEEeeh--hc---CCceeEEEeeeeecccCCceeEE
Confidence 9999999999999999999999987 67888999999999999999986 34 35678899999999999999998
Q ss_pred h------------hhHHH-------------HHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccccc
Q 005362 461 S------------EGLGS-------------VILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDV 515 (700)
Q Consensus 461 ~------------~~~~~-------------~~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~~~~~~~~ql~l 515 (700)
+ +++++ ++.++++.++.|+|+.|.+++++++..|++....+ +....
T Consensus 610 V~T~~lpt~~sl~evY~saD~~AI~~lla~~Av~ksl~ssL~dardal~~~~~D~l~aYk~~~~~~-----~~~~~---- 680 (887)
T KOG1985|consen 610 VHTLCLPTVSSLNEVYASADQEAIASLLAKKAVEKSLSSSLSDARDALTNAVVDILNAYKKLVSNQ-----NGQGI---- 680 (887)
T ss_pred EEEeeccccccHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccc-----ccCCc----
Confidence 4 23222 67788888899999999999999999999988742 11112
Q ss_pred cccCccccccHHHHHHHHhcCcccccCCCCCCchHHHHHHHhhccCChHHHHhhhccceEeeccCCCCC-C-------C-
Q 005362 516 EFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQA-F-------P- 586 (700)
Q Consensus 516 ~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~-~-------p- 586 (700)
.+.+|.+|++||+|+++|+|+++||.+. ++++|+|+|+++.++++++..++++|||+||++|+++.++ . +
T Consensus 681 ~l~~p~~LrllPllvlALlK~~~fr~g~-~~~lD~R~~a~~~~~~lpl~~L~k~IYP~Lysl~~l~~ea~~~~~d~~~~~ 759 (887)
T KOG1985|consen 681 TLSLPASLRLLPLLVLALLKHPAFRPGT-GTRLDYRAYAMCLMSTLPLKYLMKYIYPTLYSLHDLDDEAGLPIHDQTVVL 759 (887)
T ss_pred ceecCcchhhhHHHHHHHhcCCcccCCC-CCCchHHHHHHHHhhcCCHHHHHhhhcccceeccccccccCcccccccccC
Confidence 4568999999999999999999999986 5999999999999999999999999999999999975422 1 1
Q ss_pred CCccchhhhccCCCcEEEEecCceEEEEEecCCCCCCCC---------------------CCCccHHHHHHHHHHHHhcC
Q 005362 587 RHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPF---------------------PPPQDCLLRTTINKMKQERS 645 (700)
Q Consensus 587 ~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~~---------------------~~~~~~~~~~~i~~l~~~R~ 645 (700)
.+.|..++..++..|+||||+|..+++|+|++++|++.+ +++.++++++||+++|++|.
T Consensus 760 p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~ll~~vfg~~~~adi~~~~~~lp~~~n~~s~r~~~fI~~lR~d~~ 839 (887)
T KOG1985|consen 760 PPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSLLFDVFGVSTLADIPIGKYTLPELDNEESDRVRRFIKKLRDDRT 839 (887)
T ss_pred CCccchHHHHhccCceEEEecCcEEEEEEcCCCCccccccccCcchHhhcccccccCcccccchhHHHHHHHHHhhcCCc
Confidence 134555555679999999999999999999999998751 25567899999999999999
Q ss_pred CCCeEEEEeCCCC--cHHHHHhhccCCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 005362 646 ITPKLIFIRGGQD--DATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQSVVE 697 (700)
Q Consensus 646 ~~p~~~vv~~g~~--~~~~f~~~LvED~~~~~~~~~~~~sy~~fl~~lh~~i~~ 697 (700)
.+|.+++||+++. ...+|+++||||++.+ ..||+|||.+||++|++
T Consensus 840 ~~p~~~ivr~~~~s~~k~~f~~~lvEDrs~~------~~SY~efLq~lk~qv~~ 887 (887)
T KOG1985|consen 840 YFPNLYIVRGDDNSPLKAWFFSRLVEDRSEN------SPSYYEFLQHLKAQVSK 887 (887)
T ss_pred ccceEEEEecCCCchHHHHHHHHHHhhhhcC------cHHHHHHHHHHHHHhcC
Confidence 9999999997643 3568999999999974 79999999999999974
|
|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) | Back alignment and domain information |
|---|
| >PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 700 | ||||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 5e-15 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 5e-15 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 6e-15 | ||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 6e-15 | ||
| 3eh1_A | 751 | Crystal Structure Of The Human Copii-Coat Protein S | 1e-14 | ||
| 1pcx_A | 810 | Crystal Structure Of The Copii Coat Subunit, Sec24, | 8e-14 | ||
| 1m2v_B | 926 | Crystal Structure Of The Yeast Sec2324 HETERODIMER | 1e-13 | ||
| 3eh2_A | 766 | Crystal Structure Of The Human Copii-Coat Protein S | 9e-13 | ||
| 3efo_B | 770 | Crystal Structure Of The Mammalian Copii-Coat Prote | 7e-12 | ||
| 3eg9_A | 764 | Crystal Structure Of The Mammalian Copii-Coat Prote | 7e-11 | ||
| 2nup_A | 769 | Crystal Structure Of The Human Sec23a24A HETERODIME | 8e-11 | ||
| 3efo_A | 765 | Crystal Structure Of The Mammalian Copii-Coat Prote | 2e-10 |
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
|
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
| >pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 | Back alignment and structure |
| >pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 | Back alignment and structure |
| >pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 | Back alignment and structure |
| >pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 | Back alignment and structure |
| >pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 | Back alignment and structure |
| >pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 | Back alignment and structure |
| >pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 | Back alignment and structure |
| >pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
Score = 309 bits (791), Expect = 1e-94
Identities = 131/777 (16%), Positives = 246/777 (31%), Gaps = 120/777 (15%)
Query: 3 VRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNT 62
VR + + +PS +P TP + + P + + C A N
Sbjct: 21 VRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDL---PPIQYEPVL-CSRTTCRAVLNP 76
Query: 63 YCELEQWA--WTCSLCGSLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQA 120
C+++ A W C+ C N + AE++ F ++ + Q
Sbjct: 77 LCQVDYRAKLWACNFCYQRNQFPPSYAGI-SELNQPAELLPQFSSIEYVVL----RGPQM 131
Query: 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKN 180
+++ VD +E L+ + ++Q +L +P AL GL TF + ++++
Sbjct: 132 PLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSY 191
Query: 181 VF------------------IPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETL 222
VF T+ T +++ P ++FL PV+ N+T L L
Sbjct: 192 VFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGEL 251
Query: 223 RPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDH 282
+ W G R G+A+ L + NT A R+ F+ GP
Sbjct: 252 QRD-PWPVPQGKRPL--------RSSGVALSIAVGLLECTFPNTGA--RIMMFIGGPATQ 300
Query: 283 GAGQLDTRRYGEQYASKGE--DADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTD 340
G G + S + + + + T ++ LA A G +DI+A + T
Sbjct: 301 GPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTG 360
Query: 341 LASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAFNCIMRLRTSSEFKP 394
L +K +GG + + S + S Q R+ ++ F + ++TS E K
Sbjct: 361 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKI 420
Query: 395 GHSYGHFFPDPQYENVQH-------------IICCDSYATYAYDFDFANAAGFARHTSEQ 441
+ G I T A F+ N +
Sbjct: 421 SGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGR 480
Query: 442 PMLQIAFQY------------TVVVPPEELSSE----------------GLGSVILASLE 473
+Q QY T+ + ++ I +
Sbjct: 481 GAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAET 540
Query: 474 QGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFAL 533
+ + L L+ L ++ E K + +S F P+ +F L
Sbjct: 541 EEGPDVLRWLDRQLIRLCQKFGEYHK-------DDPSS-----FRFSETFSLYPQFMFHL 588
Query: 534 LRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRA 593
R+ L+ PD Y + F + + + P+L +YS L +
Sbjct: 589 RRSSFLQVF--NNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGP--PEPVLLDSS 644
Query: 594 ALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQD----------CLLRTTINKMKQE 643
+++ I L+D F I++++ T ++
Sbjct: 645 SILADR--ILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHS 702
Query: 644 RSITPKLIFIRGGQDDATIFENYLI-EEQDVDGSGLTSVMGFVSFLEEISQSVVEYM 699
R P+ I G A + + + + G +++ S+ +M
Sbjct: 703 RFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDV--SLQVFM 757
|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 700 | |||
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 2yrc_A | 59 | Protein transport protein SEC23A; zinc binding, co | 99.39 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 98.98 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.85 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 98.55 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.53 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.43 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 98.41 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.37 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 98.35 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.34 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 98.33 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 98.32 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 98.32 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 98.3 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 98.3 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 98.29 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 98.25 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 98.22 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 98.18 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 98.18 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 98.07 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 97.93 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 97.93 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 97.87 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 97.62 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 97.55 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 97.23 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 96.7 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 95.74 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 95.56 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 95.39 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 94.82 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 94.74 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 94.68 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 94.5 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 94.12 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 93.91 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 93.63 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 93.11 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 92.49 | |
| 2nvo_A | 535 | RO sixty-related protein, RSR; alpha helical repea | 89.55 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 89.44 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 84.4 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 82.18 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 81.39 |
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-129 Score=1126.12 Aligned_cols=635 Identities=22% Similarity=0.372 Sum_probs=550.6
Q ss_pred ccccccCcCCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcccCcceeEecCceEe-cceEEEccCCCCC
Q 005362 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELE-QWAWTCSLCGSLN 80 (700)
Q Consensus 2 ~vR~T~~~~P~~~~~~~~~~lP~g~~v~Pf~~~~~~~~~p~~~~~~~~~~RC~~C~ayiNp~~~~~-~~~w~C~~C~~~N 80 (700)
|||+|||+||.|++++++++||||++|+||++..+ +|++ ....|+||++|||||||||+|. +++|+||||+..|
T Consensus 42 ~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~---~P~v--~~~~p~RC~rCrayiNPf~~f~~~~~w~Cn~C~~~N 116 (751)
T 3eh1_A 42 SFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQ---LPVI--TSNTIVRCRSCRTYINPFVSFIDQRRWKCNLCYRVN 116 (751)
T ss_dssp TEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSC---CCEE--CCSCCCBCTTTCCBCCTTCEESSSSEEECTTTCCEE
T ss_pred eEEeecccCCCCHHHHHhCCCCeEEEEecCCcCCC---CCcc--CCCCCCcccCccCEeCCceEEecCCEEEcccccCCC
Confidence 79999999999999999999999999999998653 4543 2456899999999999999985 5899999999999
Q ss_pred CCChhhh-----cccCCCCCCcccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHHhCC
Q 005362 81 GLSSQAI-----ARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEAVP 152 (700)
Q Consensus 81 ~~p~~~~-----~~~~~~~~~pEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~lp 152 (700)
++|++|. .++.+.++||||++|||||++|++|+.+ ++.||+|+||||||..+ |.+++++++|+++|+.||
T Consensus 117 ~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r--~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp 194 (751)
T 3eh1_A 117 DVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLR--PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLP 194 (751)
T ss_dssp ECCGGGC---------CGGGSHHHHCSEEEEEECGGGCSS--SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHhcccccccccCcccCchhccceEEEEcChhhhcC--CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcC
Confidence 9999973 1244577899999999999999999865 57899999999999875 779999999999999999
Q ss_pred CCc--EEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHHHhcCCCCCc
Q 005362 153 SGA--LFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALETLRPTTSW 228 (700)
Q Consensus 153 ~~~--~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~-~~p~-~~~l~~l~~~~~~i~~ll~~l~~~~~~ 228 (700)
+++ +|||||||+.||||+++++..+++++ ++.|++| ++|. ++||+|++||++.|+++|++|+.++++
T Consensus 195 ~~~~~~VG~ITfd~~vh~y~l~~~~~~~qml---------vv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~ 265 (751)
T 3eh1_A 195 GDSRTRIGFMTFDSTIHFYNLQEGLSQPQML---------IVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTN 265 (751)
T ss_dssp CCTTCEEEEEEESSSEEEEECCTTCSSCEEE---------EESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTT
T ss_pred CCcCcEEEEEEeCCEEEEEECCCCcccceee---------ccccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcC
Confidence 865 99999999999999999877665553 4567887 4776 789999999999999999999887644
Q ss_pred ccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCCccccccccCcccCCCcchhhccC
Q 005362 229 ERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALL 308 (700)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~ 308 (700)
.. ++.+|+|+||++|..+|+..| |||++|++|+||.|||+|+.|++++.. ++++|++++
T Consensus 266 ~~------------~~~~~~G~AL~aA~~ll~~~G------GrI~~F~sg~pt~GpG~l~~r~~~~~~---~~~ke~~~~ 324 (751)
T 3eh1_A 266 TR------------ETHSALGPALQAAFKLMSPTG------GRVSVFQTQLPSLGAGLLQSREDPNQR---SSTKVVQHL 324 (751)
T ss_dssp CS------------CCCCCHHHHHHHHHHHHTTTC------EEEEEEECSCCCSSTTCCCCCCCSCGG---GGSSSCTTC
T ss_pred CC------------CCccchHHHHHHHHHHhhcCC------CEEEEEecCCCCCCCCccccccccccC---CCchhhhhh
Confidence 31 367999999999999999765 899999999999999999999876532 335678899
Q ss_pred CCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEEEEeCCCCC-------CchhHHHHHHhccCccee
Q 005362 309 PEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDD-------STLPQDIYRMLSRPYAFN 381 (700)
Q Consensus 309 ~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~~~y~~~~~-------~~l~~dl~~~l~~~~~~~ 381 (700)
+++.+||++||.+|+++||+||+|+++.+|+|++||+.+++.|||.+++|++|+. ++|.+||+|.|++++||+
T Consensus 325 ~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~ 404 (751)
T 3eh1_A 325 GPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFE 404 (751)
T ss_dssp SCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEE
T ss_pred cchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999974 379999999999999999
Q ss_pred eEEEEecCCCceeeeeeeccccCCCCCcceeeeccCCCceEEEEEEEecCCCCCCCCCCCcEEEEEEeeeeccCccccch
Q 005362 382 CIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSS 461 (700)
Q Consensus 382 a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~i~~~d~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt~~~g~~~~~~ 461 (700)
|+||||||+||+|+++||||+.++ .++|.++.+|+|+|++|+|++++ ++. ....+|||+|++||+..|+|++|+
T Consensus 405 a~mrVR~S~glkv~~~~G~~~~~~--t~~~~l~~i~~d~s~~v~~~~~~--~l~--~~~~~~~Q~allYT~~~G~RRiRV 478 (751)
T 3eh1_A 405 AVMRIRCTKGLSMHTFHGNFFVRS--TDLLSLANINPDAGFAVQLSIEE--SLT--DTSLVCFQTALLYTSSKGERRIRV 478 (751)
T ss_dssp EEEEEEECTTEEEEEEESSSEECS--SSEEEEEEECTTCCEEEEEEESS--CCC--SCSEEEEEEEEEEECTTSCEEEEE
T ss_pred eEEEEEecCCeEEEEeeCCeEeCC--CCceEeccCCCCCEEEEEEEEcC--CCC--CCCceEEEEEEeeecCCCCEEEEE
Confidence 999999999999999999999875 56899999999999999999875 553 356899999999999999999984
Q ss_pred ------------hhHH-------------HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcccccccc
Q 005362 462 ------------EGLG-------------SVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVE 516 (700)
Q Consensus 462 ------------~~~~-------------~~~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~~~~~~~~ql~l~ 516 (700)
++++ .++.++.++++.|+|+||+++|++++++||+++++. ..+|+
T Consensus 479 ~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~-------~~~~l--- 548 (751)
T 3eh1_A 479 HTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNL-------QHSAL--- 548 (751)
T ss_dssp EEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC------------CC---
T ss_pred EEecccccCCHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccC-------CCccc---
Confidence 2222 255667788999999999999999999999998732 23454
Q ss_pred ccCccccccHHHHHHHHhcCcccccCCCCCCchHHHHHHHhhccCChHHHHhhhccceEeeccCCCCC--------CCCC
Q 005362 517 FLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQA--------FPRH 588 (700)
Q Consensus 517 f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~--------~p~~ 588 (700)
.||++||+||+||++|+||++|+.+.. +++|||+|+++.++++++.+++.||||+||++|++.+++ +|.|
T Consensus 549 -~lpe~lkllP~~~~~L~Ks~~~~~~~~-~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P 626 (751)
T 3eh1_A 549 -MAPSSLKLFPLYVLALLKQKAFRTGTS-TRLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQP 626 (751)
T ss_dssp -EEEGGGTTHHHHHHHHHTSTTTCCSSC-CCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCC
T ss_pred -cCcHHHHHHHHHHHHHHccHhhcCCCC-CChhHHHHHHHHHhCCCHHHHHhhccceEEEeecCccccCcccCCCccCCC
Confidence 479999999999999999999998643 899999999999999999999999999999999763221 2334
Q ss_pred ccc-hhhhccCCCcEEEEecCceEEEEEecCCCCCCC---------------------CCCCccHHHHHHHHHHHHhcCC
Q 005362 589 SLS-RAALITSGSPIFLLDAFTTIIVFYSSTADPTLP---------------------FPPPQDCLLRTTINKMKQERSI 646 (700)
Q Consensus 589 ~L~-~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~---------------------~~~~~~~~~~~~i~~l~~~R~~ 646 (700)
++. .++..+.++||||||+|++++||+|+++++++. ++++.++++|++|+++|+.|..
T Consensus 627 ~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~ 706 (751)
T 3eh1_A 627 PLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPL 706 (751)
T ss_dssp CCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSSS
T ss_pred CcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 332 222235899999999999999999999998653 2356688999999999999999
Q ss_pred CCeEEEEeCCCCcHHHHHhhccCCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 005362 647 TPKLIFIRGGQDDATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQSVVE 697 (700)
Q Consensus 647 ~p~~~vv~~g~~~~~~f~~~LvED~~~~~~~~~~~~sy~~fl~~lh~~i~~ 697 (700)
+|+++|+|||++.+.+|.++||||+.++ .+||+|||++||++|++
T Consensus 707 ~~~l~vvr~~~~~~~~f~~~LvED~~~~------~~SY~~fL~~~h~~i~~ 751 (751)
T 3eh1_A 707 SPILHIVKDESPAKAEFFQHLIEDRTEA------AFSYYEFLLHVQQQICK 751 (751)
T ss_dssp CCEEEEEESSSSSHHHHHTTCTTSCBTT------BCCHHHHHHHHHHHHHC
T ss_pred cceEEEEeCCCchHHHHHHhCcccCCCC------CCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999975 59999999999999974
|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 700 | ||||
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 5e-50 | |
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 7e-40 | |
| d1pd0a1 | 107 | a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar | 6e-14 | |
| d1pd0a2 | 177 | b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast | 6e-11 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 7e-05 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 173 bits (440), Expect = 5e-50
Identities = 64/280 (22%), Positives = 101/280 (36%), Gaps = 36/280 (12%)
Query: 122 PVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNV 181
P++ VDL+S E L+ + ++ +L +P AL GL T+ + + L+D+ NV
Sbjct: 3 PIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNV 62
Query: 182 FIPSDTEDTLSLE---------------------LEDVMPLSQ--FLAPVETFKENITSA 218
F +L + V P S F P+E + +
Sbjct: 63 FRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQL 122
Query: 219 LETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSG 278
LE L P W AG R G A+ L Y N A R+ F SG
Sbjct: 123 LENLSPD-QWSVPAGH--------RPLRATGSALNIASLLLQGCYKNIPA--RIILFASG 171
Query: 279 PPDHGAGQLDTRRYGEQYASK--GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN 336
P G + + S + + FY +A G VDIFA
Sbjct: 172 PGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCY 231
Query: 337 EYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR 376
+ ++ +K L+ +GG L L + + Q R+ ++
Sbjct: 232 DQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 271
|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 700 | |||
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.83 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.78 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.74 | |
| d1pd0a1 | 107 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.73 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.65 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.65 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.61 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.96 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 98.13 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 98.11 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 98.11 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 98.05 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 98.02 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.99 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 97.91 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 97.86 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.78 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 97.75 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.64 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.52 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 97.31 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 97.25 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.1 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 97.02 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 96.96 | |
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 96.65 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 96.45 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 95.71 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 95.58 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 95.29 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.3e-46 Score=380.20 Aligned_cols=245 Identities=26% Similarity=0.391 Sum_probs=203.9
Q ss_pred CcEEEEEEECCCChhHHHHHHHHHHHHHHhCCCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCC-------------
Q 005362 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDT------------- 187 (700)
Q Consensus 121 ~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~------------- 187 (700)
||+||||||+|.++.++++++++|+++|+.+|++++|||||||++||||+++.......+++.+...
T Consensus 2 Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~~~~~ 81 (271)
T d2qtva3 2 PPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQ 81 (271)
T ss_dssp CCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECSCSSCCEEEEEESSSCCCHHHHHHHHHCC
T ss_pred CCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCcCccceeccCccccCHHHHHHHhhcc
Confidence 8999999999999999999999999999999999999999999999999998776555566543211
Q ss_pred --------Ccccccccccc-Ccc-CcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHH
Q 005362 188 --------EDTLSLELEDV-MPL-SQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFN 257 (700)
Q Consensus 188 --------~~~~~~dl~~~-~p~-~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ 257 (700)
...++.++++. .|. ++|++|++++++.|+++|++|++. .|..+.+ .+++||+|+||++|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~-~~~~~~~--------~~~~~~~G~Al~~A~~ 152 (271)
T d2qtva3 82 KPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPD-QWSVPAG--------HRPLRATGSALNIASL 152 (271)
T ss_dssp C-----------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCC-CCCCCTT--------BCCCCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCccccccccHHHHHHHHHHHHHHhccC-cccCCCC--------CCcccchHHHHHHHHH
Confidence 01234455553 444 789999999999999999999876 3433322 2478999999999999
Q ss_pred hhccccCCCcccceEEEEecCCCCCCCCccccccccCcccCCCc-ch-hhccCCCcchHHHHHHHHHHHcCcEEEEeeec
Q 005362 258 YLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DA-DRALLPEQTPFYKDLAAVAVQAGVCVDIFAIT 335 (700)
Q Consensus 258 ll~~~g~~~~~~gkii~f~~g~pt~GpG~l~~~~~~~~~~~~~~-~~-e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~ 335 (700)
+|++..++ .||||++|++|+||.|||+|+.+++++.+|++.+ ++ ++++++++.+||++||.+|+++||+||+|+++
T Consensus 153 ll~~~~~~--~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s 230 (271)
T d2qtva3 153 LLQGCYKN--IPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGC 230 (271)
T ss_dssp HHHHHCTT--SCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred HHHhhccC--CCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEec
Confidence 99853211 1499999999999999999999999998887542 33 45688999999999999999999999999999
Q ss_pred CCCcChhhhhhcccccceEEEEeCCCCCCchhHHHHHHhcc
Q 005362 336 NEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR 376 (700)
Q Consensus 336 ~~~~dl~~l~~l~~~TGG~~~~y~~~~~~~l~~dl~~~l~~ 376 (700)
.+++|++||++|++.|||.+++|++|+.+.|+++|+|+|+|
T Consensus 231 ~~~~dl~~l~~l~~~TGG~v~~~~~F~~~~f~~~l~r~~~r 271 (271)
T d2qtva3 231 YDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 271 (271)
T ss_dssp SSCCSHHHHTHHHHTTTCCEEEESCTTSHHHHHHHHHTTCB
T ss_pred CccCChHHHHhHHhhCCceEEEeCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999975
|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|