Citrus Sinensis ID: 005372
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 699 | 2.2.26 [Sep-21-2011] | |||||||
| Q9I869 | 651 | Kinesin-like protein KIF2 | N/A | no | 0.473 | 0.508 | 0.416 | 6e-68 | |
| Q7ZYL5 | 650 | Kinesin-like protein KIF2 | N/A | no | 0.818 | 0.88 | 0.319 | 1e-67 | |
| Q6P3R1 | 639 | Kinesin-like protein KIF2 | yes | no | 0.470 | 0.514 | 0.412 | 2e-67 | |
| Q3V300 | 660 | Kinesin-like protein KIF2 | yes | no | 0.444 | 0.471 | 0.398 | 3e-66 | |
| A6QPL4 | 662 | Kinesin-like protein KIF2 | yes | no | 0.463 | 0.489 | 0.392 | 2e-64 | |
| Q5I0E8 | 657 | Kinesin-like protein KIF2 | yes | no | 0.469 | 0.499 | 0.382 | 1e-63 | |
| Q14807 | 665 | Kinesin-like protein KIF2 | yes | no | 0.444 | 0.467 | 0.398 | 8e-63 | |
| Q5REP4 | 665 | Kinesin-like protein KIF2 | yes | no | 0.444 | 0.467 | 0.395 | 1e-62 | |
| A8WFU8 | 634 | Kinesin-like protein KIF2 | yes | no | 0.453 | 0.5 | 0.399 | 1e-60 | |
| Q99PW8 | 1038 | Kinesin-like protein KIF1 | no | no | 0.494 | 0.333 | 0.350 | 5e-47 |
| >sp|Q9I869|KF22A_XENLA Kinesin-like protein KIF22-A OS=Xenopus laevis GN=kif22-a PE=1 SV=1 | Back alignment and function desciption |
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Score = 259 bits (661), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 148/355 (41%), Positives = 219/355 (61%), Gaps = 24/355 (6%)
Query: 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECY 82
S+ ++VRV VR+RP++ ++ AK + C+ LD SL E+ + +T++ Y
Sbjct: 27 SSCARVRVAVRLRPYMDEKDEAKA--TTVCVRGLDSQSL----EIVNWRNQLETMQ---Y 77
Query: 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLM 142
Q D+F+G + S +I+ V ++P + G+NA+VFAYG TG+GKT+TM G+ +PG++
Sbjct: 78 QFDAFYG-DSASQREIYMGSVCHILPHLLIGQNASVFAYGPTGAGKTHTMLGNPNQPGVI 136
Query: 143 PLAMSKILSICQSTGSTAE---------ISYYEVYMDRCYDLLEVKTKEISILDDKDGQL 193
P A+ +L + ++ S E +SY E+Y ++ DLLE K K++ I +DKD +
Sbjct: 137 PRAVRDLLQMSRTAASAPENENWTYTINMSYVEIYQEKVMDLLEPKNKDLPIREDKDHNI 196
Query: 194 HLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253
+ G+++ +NS +F E F Q R VA T LND SSRSH VL+I V
Sbjct: 197 LIPGVTQKMINSFADFDEHFIPASQNRTVASTKLNDRSSRSHAVLLIKVQKSQQVVPFRQ 256
Query: 254 LTGKLNLIDLA---DNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKL 310
LTGKL LIDLA DNRRT N+GIRL ES IN SLF LS V+ ALN PR+PYR+SKL
Sbjct: 257 LTGKLYLIDLAGSEDNRRTGNQGIRLKESGAINSSLFTLSKVVDALNQGLPRIPYRDSKL 316
Query: 311 TRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRHISNTLPSAQKVQT 363
TR+LQDSLGG++H++M+ + P + Y +++ ++ AA+S+ I N S + QT
Sbjct: 317 TRLLQDSLGGSAHSVMITNIAPEQTYYFDTLTALNFAAKSKQIINKPFSQETTQT 371
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Kinesin family member that is involved in spindle formation and the movements of chromosomes during mitosis and meiosis. Binds to microtubules and to DNA. Xenopus laevis (taxid: 8355) |
| >sp|Q7ZYL5|KF22B_XENLA Kinesin-like protein KIF22-B OS=Xenopus laevis GN=kif22-b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6P3R1|KIF22_XENTR Kinesin-like protein KIF22 OS=Xenopus tropicalis GN=kif22 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q3V300|KIF22_MOUSE Kinesin-like protein KIF22 OS=Mus musculus GN=Kif22 PE=2 SV=2 | Back alignment and function description |
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| >sp|A6QPL4|KIF22_BOVIN Kinesin-like protein KIF22 OS=Bos taurus GN=KIF22 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5I0E8|KIF22_RAT Kinesin-like protein KIF22 OS=Rattus norvegicus GN=Kif22 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q14807|KIF22_HUMAN Kinesin-like protein KIF22 OS=Homo sapiens GN=KIF22 PE=1 SV=5 | Back alignment and function description |
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| >sp|Q5REP4|KIF22_PONAB Kinesin-like protein KIF22 OS=Pongo abelii GN=KIF22 PE=2 SV=1 | Back alignment and function description |
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| >sp|A8WFU8|KIF22_DANRE Kinesin-like protein KIF22 OS=Danio rerio GN=kif22 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q99PW8|KIF17_MOUSE Kinesin-like protein KIF17 OS=Mus musculus GN=Kif17 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 699 | ||||||
| 225440360 | 659 | PREDICTED: kinesin-like protein KIF22-B | 0.917 | 0.972 | 0.677 | 0.0 | |
| 356523149 | 642 | PREDICTED: kinesin-like protein KIF22-li | 0.875 | 0.953 | 0.648 | 0.0 | |
| 356566505 | 640 | PREDICTED: kinesin-like protein KIF22-li | 0.875 | 0.956 | 0.643 | 0.0 | |
| 255583123 | 644 | Osmotic avoidance abnormal protein, puta | 0.881 | 0.956 | 0.627 | 0.0 | |
| 357505599 | 671 | Kinesin-like protein KIF22-A [Medicago t | 0.874 | 0.910 | 0.587 | 0.0 | |
| 224090681 | 585 | predicted protein [Populus trichocarpa] | 0.819 | 0.979 | 0.622 | 0.0 | |
| 147817659 | 991 | hypothetical protein VITISV_007130 [Viti | 0.861 | 0.607 | 0.612 | 0.0 | |
| 449440335 | 622 | PREDICTED: kinesin-like protein KIF22-li | 0.846 | 0.951 | 0.579 | 0.0 | |
| 30679610 | 628 | kinesin family member 22 [Arabidopsis th | 0.869 | 0.968 | 0.577 | 0.0 | |
| 22531028 | 628 | kinesin-like protein [Arabidopsis thalia | 0.869 | 0.968 | 0.575 | 0.0 |
| >gi|225440360|ref|XP_002270444.1| PREDICTED: kinesin-like protein KIF22-B [Vitis vinifera] gi|297740374|emb|CBI30556.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/661 (67%), Positives = 516/661 (78%), Gaps = 20/661 (3%)
Query: 6 VSSSFNTPSKSTIPNSTSTS-SKVRVIVRVRPFLSQEIAA-KNGNSICCISVLDRGSLSC 63
+++S TP K+ STS SKVRVIVRVRPFL EIAA KNGN I C SVLD+ S
Sbjct: 1 MATSLITPKKANTMQLQSTSISKVRVIVRVRPFLPHEIAAAKNGNPISCASVLDQDCES- 59
Query: 64 NEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGA 123
EEV V+L D +T R ECY+LDSF G D +VS IFY EV+PLIPGIFHG NATVFAYGA
Sbjct: 60 GEEVVVHLNDQETSRRECYKLDSFLGPHDNNVSLIFYREVSPLIPGIFHGCNATVFAYGA 119
Query: 124 TGSGKTYTMQGSEERPGLMPLAMSKILSICQSTGSTAEISYYEVYMDRCYDLLEVKTKEI 183
TGSGKTYTMQG++E PGLMPL MS +L++C ST STAE+SYYEVYMDRCYDLLEVK KEI
Sbjct: 120 TGSGKTYTMQGTDELPGLMPLTMSAVLTMCWSTASTAEMSYYEVYMDRCYDLLEVKAKEI 179
Query: 184 SILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243
+ILDDKDGQ+HLKGLSRVP++SM+EF E+FS GIQRRKVAHTGLNDVSSRSHGVLVISVS
Sbjct: 180 AILDDKDGQIHLKGLSRVPISSMSEFYEVFSHGIQRRKVAHTGLNDVSSRSHGVLVISVS 239
Query: 244 TLLGDDSKAALTGKLNLIDLA---DNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK 300
T D A +TGKLNLIDLA DNRRTCNEGIRL ESAKINQSLFALSNVI+ALNNNK
Sbjct: 240 TPCDDGFGAVVTGKLNLIDLAGNEDNRRTCNEGIRLQESAKINQSLFALSNVIYALNNNK 299
Query: 301 PRVPYRESKLTRILQDSLGGTSHALMVACLNPGEYQESVHTVSLAARSRHISNTLPSAQK 360
PRVPYRESKLTRILQDSLGGTS ALMVACLNPGEYQESVHTVSLAARSRHISN++PSAQK
Sbjct: 300 PRVPYRESKLTRILQDSLGGTSRALMVACLNPGEYQESVHTVSLAARSRHISNSVPSAQK 359
Query: 361 VQTPMVKIDMEAKLRAWLESKGKTKSAQRMAVRGTPIVSKTPTSVCSVKKTIN-HSCRKV 419
TP VK+DMEAKLRAWLESKGKTKSAQRM G+P++SK P+S+ S+KK HS K
Sbjct: 360 QDTPNVKVDMEAKLRAWLESKGKTKSAQRMRAFGSPLMSKAPSSLSSLKKPYPCHSSTKA 419
Query: 420 KVSPKQDASNAEDRALCVPFRNLLIDEGLGDSCSESHHMVA----NDTE-EITAGKDGII 474
K Q ASNA++R L V RNL + G DS +ES + A N+TE E AG DG
Sbjct: 420 KAITNQGASNAKERVLSVQHRNLFNNRGSVDSGTESFNFAAENNTNNTEDEFKAGGDGSA 479
Query: 475 SISSPRHLPDE--QSEEKATFMNSQAS----PVFERKSATQSPLRTALSPININANTKPL 528
S ++ LPD+ +++K T M S S P+ E+ A Q LR LSP+N + + KPL
Sbjct: 480 SETN-TILPDDALANDKKMTTMKSANSIGSPPISEKFKALQGSLRKVLSPVNSDDSRKPL 538
Query: 529 EKLSDTDQHCPL-LEPKTPRTPFTATCASNKFQPIGTPLDKFSARSIRLKNSLVQEYIDF 587
E LS Q C + EPKTP+TP TCA++ FQ + TPLDKF+ R+ LK+SL+QEYIDF
Sbjct: 539 EDLSSKGQVCSVPFEPKTPKTPTNMTCANDNFQMVDTPLDKFNVRTSNLKSSLIQEYIDF 598
Query: 588 LNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKAAKGIF 647
LNTAS EEL+ELKGIGQ+ A+YI ELR++SP+K LSDLEKIGLS+KQVYN+FG+ AKGIF
Sbjct: 599 LNTASIEELLELKGIGQKRAEYILELREASPLKMLSDLEKIGLSSKQVYNVFGRTAKGIF 658
Query: 648 D 648
D
Sbjct: 659 D 659
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523149|ref|XP_003530204.1| PREDICTED: kinesin-like protein KIF22-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356566505|ref|XP_003551471.1| PREDICTED: kinesin-like protein KIF22-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255583123|ref|XP_002532328.1| Osmotic avoidance abnormal protein, putative [Ricinus communis] gi|223527971|gb|EEF30055.1| Osmotic avoidance abnormal protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357505599|ref|XP_003623088.1| Kinesin-like protein KIF22-A [Medicago truncatula] gi|355498103|gb|AES79306.1| Kinesin-like protein KIF22-A [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|224090681|ref|XP_002309056.1| predicted protein [Populus trichocarpa] gi|222855032|gb|EEE92579.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|147817659|emb|CAN60160.1| hypothetical protein VITISV_007130 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449440335|ref|XP_004137940.1| PREDICTED: kinesin-like protein KIF22-like [Cucumis sativus] gi|449483641|ref|XP_004156646.1| PREDICTED: kinesin-like protein KIF22-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|30679610|ref|NP_195857.2| kinesin family member 22 [Arabidopsis thaliana] gi|59958334|gb|AAX12877.1| At5g02370 [Arabidopsis thaliana] gi|332003081|gb|AED90464.1| kinesin family member 22 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|22531028|gb|AAM97018.1| kinesin-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 699 | ||||||
| TAIR|locus:2180122 | 628 | AT5G02370 [Arabidopsis thalian | 0.732 | 0.815 | 0.577 | 3.1e-179 | |
| RGD|1311886 | 657 | Kif22 "kinesin family member 2 | 0.546 | 0.581 | 0.371 | 1.6e-65 | |
| MGI|MGI:109233 | 660 | Kif22 "kinesin family member 2 | 0.831 | 0.880 | 0.323 | 2e-65 | |
| UNIPROTKB|A6QPL4 | 662 | KIF22 "Kinesin-like protein KI | 0.836 | 0.883 | 0.330 | 1.1e-64 | |
| UNIPROTKB|E2RRZ0 | 664 | KIF22 "Uncharacterized protein | 0.835 | 0.879 | 0.321 | 3.7e-64 | |
| UNIPROTKB|I3LNN6 | 663 | KIF22 "Uncharacterized protein | 0.836 | 0.882 | 0.319 | 6e-64 | |
| UNIPROTKB|H3BRB3 | 611 | KIF22 "Kinesin-like protein KI | 0.480 | 0.549 | 0.379 | 6.2e-64 | |
| UNIPROTKB|Q14807 | 665 | KIF22 "Kinesin-like protein KI | 0.832 | 0.875 | 0.313 | 7.1e-61 | |
| ZFIN|ZDB-GENE-080204-34 | 634 | kif22 "kinesin family member 2 | 0.835 | 0.921 | 0.305 | 1.9e-60 | |
| UNIPROTKB|B7Z265 | 597 | KIF22 "cDNA FLJ53835, highly s | 0.791 | 0.926 | 0.311 | 1.4e-57 |
| TAIR|locus:2180122 AT5G02370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1395 (496.1 bits), Expect = 3.1e-179, Sum P(2) = 3.1e-179
Identities = 312/540 (57%), Positives = 381/540 (70%)
Query: 12 TPSKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYL 71
TP+K+ + +S+S S+ VRV++RVRPFL +EI+ ++ + C+SV+ G EVAVYL
Sbjct: 6 TPAKTKLLDSSSISN-VRVVLRVRPFLPREISDESCDGRSCVSVIG-GDGGDTSEVAVYL 63
Query: 72 KDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYT 131
KDPD+ R+E YQLD+F+G+ED++V IF EV+PLIPGIFHG NATV AYGATGSGKT+T
Sbjct: 64 KDPDSCRNESYQLDAFYGREDDNVKHIFDREVSPLIPGIFHGFNATVLAYGATGSGKTFT 123
Query: 132 MQGSEERPGLMPLAMSKILSICQSTGSTAEISYYEVYMDRCYDLLEVKTKEISILDDKDG 191
MQG +E PGLMPL MS ILS+C+ T S AEISYYEVYMDRC+DLLEVK EI++ DDKDG
Sbjct: 124 MQGIDELPGLMPLTMSTILSMCEKTRSRAEISYYEVYMDRCWDLLEVKDNEIAVWDDKDG 183
Query: 192 QLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSK 251
Q+HLKGLS VPV SM+EFQE + G+QRRKVAHTGLNDVSSRSHGVLVISV+ S+
Sbjct: 184 QVHLKGLSSVPVKSMSEFQEAYLCGVQRRKVAHTGLNDVSSRSHGVLVISVT------SQ 237
Query: 252 AALTGKLNLIDLA---DNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRES 308
+TGK+NLIDLA DNRRT NEGIRL ESAKINQSLFALSNV++ALNNN PRVPYRE+
Sbjct: 238 GLVTGKINLIDLAGNEDNRRTGNEGIRLQESAKINQSLFALSNVVYALNNNLPRVPYRET 297
Query: 309 KLTRILQDSLGGTSHALMVACLNPGEYQESVHTVSLAARSRHISNTLPSAQKVQTPMVKI 368
KLTRILQDSLGGTS ALMVACLNPGEYQES+ TVSLAARSRHISN + KV+TP VKI
Sbjct: 298 KLTRILQDSLGGTSRALMVACLNPGEYQESLRTVSLAARSRHISNNVSLNPKVETPKVKI 357
Query: 369 DMEAKLRAWLESKGKTKSAQRMAVRGTPIVSKTPTSVC--SVKKTINHSCRKVKVSPKQD 426
DMEAKL+AWLESKGK KSA RM +P++ TS+ SVKK + C + ++
Sbjct: 358 DMEAKLQAWLESKGKMKSAHRMMAIRSPLMGTNQTSISQSSVKKLL---CHRSAIAESAK 414
Query: 427 ASNAEDRALCVPFRNLLIDEGLGDSCSESHHMVANDTEEITAGKDGIISISSPRHLPDEQ 486
+ R V RNL E L + S + N + + K+ S +L +
Sbjct: 415 LAGTGQRDAFVTARNLFGVETL--AASHLWEPIRN-LQLASPTKEDERDTSGEENLLVSE 471
Query: 487 SEEKATFMNSQASPVFERKSATQSPLRTALSPININANTKPLEKLSDTDQHCPLLEPKTP 546
+ + ++ E+K SPLR ALSPI+ NA KP + P+ PKTP
Sbjct: 472 ASLRDNTLD------VEKKYTELSPLREALSPIDSNA--KPNSAHGSSPFLKPMT-PKTP 522
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| RGD|1311886 Kif22 "kinesin family member 22" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:109233 Kif22 "kinesin family member 22" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A6QPL4 KIF22 "Kinesin-like protein KIF22" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RRZ0 KIF22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|I3LNN6 KIF22 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|H3BRB3 KIF22 "Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q14807 KIF22 "Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-080204-34 kif22 "kinesin family member 22" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B7Z265 KIF22 "cDNA FLJ53835, highly similar to Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 699 | |||
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 1e-135 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-106 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 8e-95 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 6e-93 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 5e-76 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 4e-73 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 1e-72 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 6e-70 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 9e-68 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 1e-66 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 2e-65 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 4e-64 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 2e-63 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 2e-59 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 2e-58 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 3e-49 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 1e-42 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 1e-33 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 2e-26 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 2e-08 | |
| pfam12836 | 65 | pfam12836, HHH_3, Helix-hairpin-helix motif | 1e-04 |
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
Score = 400 bits (1029), Expect = e-135
Identities = 155/330 (46%), Positives = 208/330 (63%), Gaps = 20/330 (6%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDT-IRSECYQLDS 86
VRV+VRVRPFL E + + C+ +D +V +++P ++ YQ D+
Sbjct: 2 VRVVVRVRPFLDCEEDSSS-----CVRGIDSDQGQ---AKSVEIENPRNRGETKKYQFDA 53
Query: 87 FFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAM 146
F+G E + IF EV P++P + G+NATVFAYG+TG+GKT+TM G PGL+P +
Sbjct: 54 FYGTEC-TQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTL 112
Query: 147 SKILSICQSTG--STAEISYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVN 204
S +L + + +SYYE+Y ++ YDLLE KE+ I +DKDG + + GL+ P+
Sbjct: 113 SDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIK 172
Query: 205 SMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLNLIDLA 264
SM EF+E + + R VA T LND SSRSH VL I V+ + L GKLNLIDLA
Sbjct: 173 SMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN---IQLEGKLNLIDLA 229
Query: 265 ---DNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGT 321
DNRRT NEGIRL ESA IN SLF LS V+ ALN PR+PYRESKLTR+LQDSLGG
Sbjct: 230 GSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGG 289
Query: 322 SHALMVACLNPG--EYQESVHTVSLAARSR 349
S +MVA + P YQ+++ T++ A+RS+
Sbjct: 290 SRCIMVANIAPERSFYQDTLSTLNFASRSK 319
|
Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|205097 pfam12836, HHH_3, Helix-hairpin-helix motif | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 699 | |||
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG1555 | 149 | ComEA DNA uptake protein and related DNA-binding p | 99.54 | |
| PF12836 | 65 | HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE | 99.48 | |
| TIGR01259 | 120 | comE comEA protein. This model describes the ComEA | 99.33 | |
| TIGR00426 | 69 | competence protein ComEA helix-hairpin-helix repea | 99.19 | |
| PRK02515 | 132 | psbU photosystem II complex extrinsic protein prec | 99.04 | |
| COG1491 | 202 | Predicted RNA-binding protein [Translation, riboso | 98.39 | |
| PF04919 | 181 | DUF655: Protein of unknown function (DUF655); Inte | 98.31 | |
| PF00633 | 30 | HHH: Helix-hairpin-helix motif; InterPro: IPR00044 | 97.77 | |
| PF14579 | 90 | HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI | 97.26 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 97.05 | |
| COG2183 | 780 | Tex Transcriptional accessory protein [Transcripti | 96.92 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 96.88 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 96.7 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 96.65 | |
| PF06514 | 93 | PsbU: Photosystem II 12 kDa extrinsic protein (Psb | 96.64 | |
| cd00141 | 307 | NT_POLXc Nucleotidyltransferase (NT) domain of fam | 96.33 | |
| PF03934 | 280 | T2SK: Type II secretion system (T2SS), protein K; | 96.03 | |
| COG2176 | 1444 | PolC DNA polymerase III, alpha subunit (gram-posit | 95.76 | |
| PRK00116 | 192 | ruvA Holliday junction DNA helicase RuvA; Reviewed | 94.94 | |
| TIGR01405 | 1213 | polC_Gram_pos DNA polymerase III, alpha chain, Gra | 94.58 | |
| smart00278 | 26 | HhH1 Helix-hairpin-helix DNA-binding motif class 1 | 94.24 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 94.09 | |
| PRK00448 | 1437 | polC DNA polymerase III PolC; Validated | 94.07 | |
| PRK12766 | 232 | 50S ribosomal protein L32e; Provisional | 93.83 | |
| PRK14605 | 194 | ruvA Holliday junction DNA helicase RuvA; Provisio | 93.81 | |
| smart00483 | 334 | POLXc DNA polymerase X family. includes vertebrate | 93.68 | |
| PRK13901 | 196 | ruvA Holliday junction DNA helicase RuvA; Provisio | 93.68 | |
| PF12826 | 64 | HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS | 93.61 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 92.95 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 92.92 | |
| KOG2534 | 353 | consensus DNA polymerase IV (family X) [Replicatio | 92.9 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 92.62 | |
| PF12826 | 64 | HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS | 92.32 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 92.3 | |
| PF10391 | 52 | DNA_pol_lambd_f: Fingers domain of DNA polymerase | 91.6 | |
| TIGR00084 | 191 | ruvA Holliday junction DNA helicase, RuvA subunit. | 91.18 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 90.96 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 89.83 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 89.64 | |
| PRK14601 | 183 | ruvA Holliday junction DNA helicase RuvA; Provisio | 89.5 | |
| PF11731 | 93 | Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd | 89.32 | |
| PRK14606 | 188 | ruvA Holliday junction DNA helicase RuvA; Provisio | 89.12 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 89.02 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 88.87 | |
| PRK07135 | 973 | dnaE DNA polymerase III DnaE; Validated | 88.69 | |
| PRK14602 | 203 | ruvA Holliday junction DNA helicase RuvA; Provisio | 88.55 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 88.5 | |
| TIGR00594 | 1022 | polc DNA-directed DNA polymerase III (polc). This | 88.33 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 88.23 | |
| PRK06620 | 214 | hypothetical protein; Validated | 88.17 | |
| PRK14603 | 197 | ruvA Holliday junction DNA helicase RuvA; Provisio | 87.69 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 87.44 | |
| PRK09087 | 226 | hypothetical protein; Validated | 87.3 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 87.28 | |
| PRK13901 | 196 | ruvA Holliday junction DNA helicase RuvA; Provisio | 87.08 | |
| PRK14604 | 195 | ruvA Holliday junction DNA helicase RuvA; Provisio | 87.02 | |
| PRK14667 | 567 | uvrC excinuclease ABC subunit C; Provisional | 86.94 | |
| PRK14601 | 183 | ruvA Holliday junction DNA helicase RuvA; Provisio | 86.89 | |
| COG1948 | 254 | MUS81 ERCC4-type nuclease [DNA replication, recomb | 86.59 | |
| PF14716 | 68 | HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU | 86.46 | |
| PRK05898 | 971 | dnaE DNA polymerase III DnaE; Validated | 86.44 | |
| PF02371 | 87 | Transposase_20: Transposase IS116/IS110/IS902 fami | 86.37 | |
| PRK00116 | 192 | ruvA Holliday junction DNA helicase RuvA; Reviewed | 86.32 | |
| PRK14670 | 574 | uvrC excinuclease ABC subunit C; Provisional | 86.31 | |
| PRK14602 | 203 | ruvA Holliday junction DNA helicase RuvA; Provisio | 85.4 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 85.28 | |
| PRK14606 | 188 | ruvA Holliday junction DNA helicase RuvA; Provisio | 85.01 | |
| PRK14666 | 694 | uvrC excinuclease ABC subunit C; Provisional | 84.85 | |
| PRK14604 | 195 | ruvA Holliday junction DNA helicase RuvA; Provisio | 84.7 | |
| PRK14600 | 186 | ruvA Holliday junction DNA helicase RuvA; Provisio | 84.57 | |
| PRK14603 | 197 | ruvA Holliday junction DNA helicase RuvA; Provisio | 84.32 | |
| PF03934 | 280 | T2SK: Type II secretion system (T2SS), protein K; | 84.05 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 83.89 | |
| PRK14669 | 624 | uvrC excinuclease ABC subunit C; Provisional | 83.89 | |
| COG1796 | 326 | POL4 DNA polymerase IV (family X) [DNA replication | 83.66 | |
| COG0632 | 201 | RuvA Holliday junction resolvasome, DNA-binding su | 83.46 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 83.24 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 83.08 | |
| PRK14672 | 691 | uvrC excinuclease ABC subunit C; Provisional | 82.93 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 82.8 | |
| PRK14600 | 186 | ruvA Holliday junction DNA helicase RuvA; Provisio | 82.79 | |
| COG0632 | 201 | RuvA Holliday junction resolvasome, DNA-binding su | 82.39 | |
| PRK12377 | 248 | putative replication protein; Provisional | 82.0 | |
| smart00483 | 334 | POLXc DNA polymerase X family. includes vertebrate | 81.81 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 81.28 | |
| PRK08727 | 233 | hypothetical protein; Validated | 80.92 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 80.82 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 80.76 | |
| PRK06526 | 254 | transposase; Provisional | 80.45 | |
| PRK00558 | 598 | uvrC excinuclease ABC subunit C; Validated | 80.36 |
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-81 Score=695.92 Aligned_cols=341 Identities=36% Similarity=0.552 Sum_probs=294.8
Q ss_pred CCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCC---CCceeeeeceeeCCCCCcHhHHHH
Q 005372 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDT---IRSECYQLDSFFGQEDESVSKIFY 100 (699)
Q Consensus 24 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~---~~~~~F~FD~VF~~~~~sQ~~Vf~ 100 (699)
...+|+|+||+||+...+.... ...++.+... ...+.++++.. ...+.|+||.||+++. +|++||.
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~---~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~ftfD~vf~~~s-tQ~dvy~ 71 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSEL---LKSILSVDPA-------HGRVSLKNPVAGIEGKPKSFTFDAVFDSDS-TQDDVYQ 71 (574)
T ss_pred cccceeEEEeecCCCchhhhhh---hccccccccc-------cceeeecCCcccccCCCCCceeeeeecCCC-CHHHHHH
Confidence 4578999999999998775543 2233333322 23455555433 2346799999999875 8999999
Q ss_pred hhccchhhhhcCCCCEEEEeeccCCCCCcceeccC-CCCCCchHHHHHHHHHhhhcCC----ceeEEEEEEEecceeeec
Q 005372 101 SEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS-EERPGLMPLAMSKILSICQSTG----STAEISYYEVYMDRCYDL 175 (699)
Q Consensus 101 ~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~-~~~~GIipral~~LF~~~~~~~----~~v~vS~~EIYnE~v~DL 175 (699)
.++.|+|+++++|||+||||||||||||||||.|. .+..|||||++++||.+++... +.|++||+|||||.|+||
T Consensus 72 ~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DL 151 (574)
T KOG4280|consen 72 ETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDL 151 (574)
T ss_pred HHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHH
Confidence 99999999999999999999999999999999999 6678999999999999997653 889999999999999999
Q ss_pred cCCCc-cceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEee--cCCCCc
Q 005372 176 LEVKT-KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLL--GDDSKA 252 (699)
Q Consensus 176 L~~~~-~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~--~~~~~~ 252 (699)
|++.. +.+.++++++.|+||+||+++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|++.. .++...
T Consensus 152 L~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~ 231 (574)
T KOG4280|consen 152 LSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMS 231 (574)
T ss_pred hCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccc
Confidence 99887 589999999999999999999999999999999999999999999999999999999999999833 234456
Q ss_pred eEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCCC-CCCCCCChhhhhcccccCCCceeEEEE
Q 005372 253 ALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNKP-RVPYRESKLTRILQDSLGGTSHALMVA 328 (699)
Q Consensus 253 ~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~-~IPYRdSKLTrLLqdsLgGnskt~mI~ 328 (699)
...|||+||||||+|| ++++|.|++|+.+||+||++||+||.+|.+++. ||||||||||+||||+|||||+|+||+
T Consensus 232 ~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mia 311 (574)
T KOG4280|consen 232 GRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIA 311 (574)
T ss_pred cccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEE
Confidence 6789999999999998 677889999999999999999999999999877 999999999999999999999999999
Q ss_pred EeCCC--ChhhhHHHHHHHHHhhhccccCCCccccCCcchhhHHH-HHHHHHHHhhccc
Q 005372 329 CLNPG--EYQESVHTVSLAARSRHISNTLPSAQKVQTPMVKIDME-AKLRAWLESKGKT 384 (699)
Q Consensus 329 ~VSP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~~~~~~~~~~~-~~l~~~le~~~k~ 384 (699)
||+|+ +++||++||+||+||+.|+|.+.+| .|+. +.++.+.++...+
T Consensus 312 nvsp~~~~~~ETlsTLrfA~Rak~I~nk~~in---------ed~~~~~~~~lq~ei~~L 361 (574)
T KOG4280|consen 312 NVSPSSDNYEETLSTLRFAQRAKAIKNKPVIN---------EDPKDALLRELQEEIERL 361 (574)
T ss_pred ecCchhhhhHHHHHHHHHHHHHHHhhcccccc---------CCcchhhHHHHHHHHHHH
Confidence 99998 4799999999999999999965544 3433 4555555554443
|
|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A | Back alignment and domain information |
|---|
| >TIGR01259 comE comEA protein | Back alignment and domain information |
|---|
| >TIGR00426 competence protein ComEA helix-hairpin-helix repeat region | Back alignment and domain information |
|---|
| >PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional | Back alignment and domain information |
|---|
| >COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF04919 DUF655: Protein of unknown function (DUF655); InterPro: IPR007003 This family includes several uncharacterised archaeal proteins | Back alignment and domain information |
|---|
| >PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] | Back alignment and domain information |
|---|
| >PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A | Back alignment and domain information |
|---|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
| >COG2183 Tex Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF06514 PsbU: Photosystem II 12 kDa extrinsic protein (PsbU); InterPro: IPR010527 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae | Back alignment and domain information |
|---|
| >cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases | Back alignment and domain information |
|---|
| >PF03934 T2SK: Type II secretion system (T2SS), protein K; InterPro: IPR005628 Members of this family are involved in the general secretion pathway | Back alignment and domain information |
|---|
| >COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed | Back alignment and domain information |
|---|
| >TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type | Back alignment and domain information |
|---|
| >smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 | Back alignment and domain information |
|---|
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
| >PRK00448 polC DNA polymerase III PolC; Validated | Back alignment and domain information |
|---|
| >PRK12766 50S ribosomal protein L32e; Provisional | Back alignment and domain information |
|---|
| >PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >smart00483 POLXc DNA polymerase X family | Back alignment and domain information |
|---|
| >PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
| >PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains | Back alignment and domain information |
|---|
| >TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
| >PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] | Back alignment and domain information |
|---|
| >PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK07135 dnaE DNA polymerase III DnaE; Validated | Back alignment and domain information |
|---|
| >PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
| >TIGR00594 polc DNA-directed DNA polymerase III (polc) | Back alignment and domain information |
|---|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14667 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A | Back alignment and domain information |
|---|
| >PRK05898 dnaE DNA polymerase III DnaE; Validated | Back alignment and domain information |
|---|
| >PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA | Back alignment and domain information |
|---|
| >PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed | Back alignment and domain information |
|---|
| >PRK14670 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14666 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PF03934 T2SK: Type II secretion system (T2SS), protein K; InterPro: IPR005628 Members of this family are involved in the general secretion pathway | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK14669 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK14672 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >smart00483 POLXc DNA polymerase X family | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK00558 uvrC excinuclease ABC subunit C; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 699 | ||||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-63 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 1e-46 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 4e-46 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-46 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 5e-44 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 2e-43 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 2e-43 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 2e-43 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-43 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 5e-43 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 6e-43 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 8e-43 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 1e-42 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 2e-42 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 2e-42 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 2e-42 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 2e-42 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 2e-42 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 3e-42 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 3e-42 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 6e-42 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 3e-41 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 5e-41 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 3e-40 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 2e-39 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 7e-39 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 4e-37 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 4e-37 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 7e-37 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 8e-37 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-34 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 6e-34 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 1e-33 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 1e-33 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 1e-33 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 1e-33 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 5e-33 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 7e-33 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 7e-33 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 2e-32 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 6e-32 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 2e-31 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 1e-30 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-28 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 1e-28 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 2e-28 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 3e-26 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 3e-26 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 4e-26 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 5e-26 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 2e-25 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 2e-25 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 1e-24 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 6e-22 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 1e-21 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 1e-21 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 2e-10 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-10 |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
|
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
Score = 329 bits (847), Expect = e-107
Identities = 140/385 (36%), Positives = 216/385 (56%), Gaps = 25/385 (6%)
Query: 11 NTPSKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVY 70
+ S ++VRV VR+RPF+ A + C+ +D SL E+A +
Sbjct: 6 HHSSGRENLYFQGPPARVRVAVRLRPFVDGTAGA---SDPPCVRGMDSCSL----EIANW 58
Query: 71 LKDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTY 130
+T++ YQ D+F+G E + I+ V P++ + G+NA+V AYG TG+GKT+
Sbjct: 59 RNHQETLK---YQFDAFYG-ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTH 114
Query: 131 TMQGSEERPGLMPLAMSKILSICQSTGSTAE-------ISYYEVYMDRCYDLLEVKTKEI 183
TM GS E+PG++P A+ +L + + G+ +SY E+Y ++ DLL+ + ++
Sbjct: 115 TMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDL 174
Query: 184 SILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243
I +D G + + GLS+ P++S +F+ F + R V T LN SSRSH VL++ V
Sbjct: 175 VIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVD 234
Query: 244 TLLGDDSKAALTGKLNLIDLA---DNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK 300
GKL LIDLA DNRRT N+G+RL ES IN SLF L V+ ALN
Sbjct: 235 QRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL 294
Query: 301 PRVPYRESKLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRHISNTLPSA 358
PRVPYR+SKLTR+LQDSLGG++H++++A + P Y ++V ++ AARS+ + N +
Sbjct: 295 PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTN 354
Query: 359 QKVQTPMVKI--DMEAKLRAWLESK 381
+ +Q + + +L E+K
Sbjct: 355 ESLQPHALGPVKLSQKELLGPPEAK 379
|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 Length = 98 | Back alignment and structure |
|---|
| >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 Length = 75 | Back alignment and structure |
|---|
| >2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1 Length = 205 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 699 | |||
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.92 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.89 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.87 | |
| 3arc_U | 97 | Photosystem II 12 kDa extrinsic protein; PSII, mem | 99.29 | |
| 1s5l_U | 134 | Photosystem II 12 kDa extrinsic protein; photosynt | 99.23 | |
| 2duy_A | 75 | Competence protein comea-related protein; helix-ha | 99.18 | |
| 2edu_A | 98 | Kinesin-like protein KIF22; kinesin-like DNA bindi | 98.99 | |
| 2i5h_A | 205 | Hypothetical protein AF1531; PFAM:DUF655, PSI-2, s | 98.98 | |
| 3bzc_A | 785 | TEX; helix-turn-helix, helix-hairpin-helix, S1 dom | 98.66 | |
| 3psf_A | 1030 | Transcription elongation factor SPT6; nucleus; 2.5 | 98.1 | |
| 3psi_A | 1219 | Transcription elongation factor SPT6; nucleus; 3.3 | 98.0 | |
| 3ci0_K | 298 | Pseudopilin GSPK; general secretory pathway, pseud | 97.54 | |
| 2bcq_A | 335 | DNA polymerase lambda; misalignment, extrahelical, | 97.34 | |
| 2fmp_A | 335 | DNA polymerase beta; nucleotidyl transferase, tran | 96.91 | |
| 2ihm_A | 360 | POL MU, DNA polymerase MU; helix-turn-helix, trans | 96.63 | |
| 2a1j_B | 91 | DNA excision repair protein ERCC-1; XPF, xeroderma | 96.57 | |
| 1vq8_Y | 241 | 50S ribosomal protein L32E; ribosome 50S, protein- | 96.52 | |
| 1z00_A | 89 | DNA excision repair protein ERCC-1; helix-hairpin- | 96.52 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 96.18 | |
| 1ixr_A | 191 | Holliday junction DNA helicase RUVA; heterooligome | 96.09 | |
| 1x2i_A | 75 | HEF helicase/nuclease; alpha helix, helix-hairpin- | 96.09 | |
| 1jms_A | 381 | Terminal deoxynucleotidyltransferase; polymerase; | 95.87 | |
| 2ztd_A | 212 | Holliday junction ATP-dependent DNA helicase RUVA; | 95.79 | |
| 1cuk_A | 203 | RUVA protein; DNA repair, SOS response, DNA-bindin | 95.49 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 95.23 | |
| 2w9m_A | 578 | Polymerase X; SAXS, DNA repair, DNA polymerase, DN | 94.97 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 94.49 | |
| 3f2b_A | 1041 | DNA-directed DNA polymerase III alpha chain; DNA p | 94.11 | |
| 2bgw_A | 219 | XPF endonuclease; hydrolase, structure specific en | 93.39 | |
| 3c65_A | 226 | Uvrabc system protein C; UVRC, endonuclease, nucle | 92.0 | |
| 2hnh_A | 910 | DNA polymerase III alpha subunit; DNA replication, | 90.83 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 90.65 | |
| 3b0x_A | 575 | DNA polymerase beta family (X family); structural | 90.44 | |
| 1z00_A | 89 | DNA excision repair protein ERCC-1; helix-hairpin- | 89.26 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 89.0 | |
| 1ixr_A | 191 | Holliday junction DNA helicase RUVA; heterooligome | 88.1 | |
| 1x2i_A | 75 | HEF helicase/nuclease; alpha helix, helix-hairpin- | 87.75 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 87.75 | |
| 1cuk_A | 203 | RUVA protein; DNA repair, SOS response, DNA-bindin | 87.67 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 87.2 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 86.22 | |
| 3ci0_K | 298 | Pseudopilin GSPK; general secretory pathway, pseud | 85.13 | |
| 3c1y_A | 377 | DNA integrity scanning protein DISA; DNA damage, D | 85.02 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 84.94 | |
| 2a1j_B | 91 | DNA excision repair protein ERCC-1; XPF, xeroderma | 84.92 | |
| 1b22_A | 114 | DNA repair protein RAD51; DNA binding, riken struc | 83.66 | |
| 2fmp_A | 335 | DNA polymerase beta; nucleotidyl transferase, tran | 83.33 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 82.16 | |
| 2ztd_A | 212 | Holliday junction ATP-dependent DNA helicase RUVA; | 81.28 | |
| 2ihm_A | 360 | POL MU, DNA polymerase MU; helix-turn-helix, trans | 80.4 | |
| 1jms_A | 381 | Terminal deoxynucleotidyltransferase; polymerase; | 80.13 |
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-83 Score=691.45 Aligned_cols=325 Identities=35% Similarity=0.570 Sum_probs=265.7
Q ss_pred CCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCC--------CCCceeeeeceeeCCCCCcHh
Q 005372 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPD--------TIRSECYQLDSFFGQEDESVS 96 (699)
Q Consensus 25 ~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~--------~~~~~~F~FD~VF~~~~~sQ~ 96 (699)
.++|||+||+||+++.|...+ ...|+.+.+... ++.+.++. ....+.|.||+||++++ +|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~-------~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~ 71 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETREN---ALNIIRMDEASA-------QVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTS-CNY 71 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTT---CCBCEEEEGGGT-------EEEECC--------------EEEECSEEECTTC-CHH
T ss_pred CCCeEEEEEeCCCChhhhccC---CceEEEEcCCCC-------EEEEeeccccccccccCCCceEeeCCEEECCCc-chh
Confidence 479999999999999997654 445666654321 33333332 23357899999999876 889
Q ss_pred HHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc----CCceeEEEEEEEeccee
Q 005372 97 KIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRC 172 (699)
Q Consensus 97 ~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~----~~~~v~vS~~EIYnE~v 172 (699)
+||+.+++|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.++. ..+.|.+||+|||||++
T Consensus 72 ~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i 151 (350)
T 2vvg_A 72 GIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEI 151 (350)
T ss_dssp HHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999999999998863 34789999999999999
Q ss_pred eeccCCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCC-CC
Q 005372 173 YDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDD-SK 251 (699)
Q Consensus 173 ~DLL~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~-~~ 251 (699)
+|||++ ...+.+++++.++++|.|++++.|.+++|++++|..|..+|++++|.+|+.|||||+||+|+|++..... ..
T Consensus 152 ~DLL~~-~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 230 (350)
T 2vvg_A 152 RDLIKN-NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKE 230 (350)
T ss_dssp EETTTT-EEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----C
T ss_pred EEcccC-CcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCc
Confidence 999984 4579999999999999999999999999999999999999999999999999999999999998865433 23
Q ss_pred ceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccccCCCceeEEEE
Q 005372 252 AALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVA 328 (699)
Q Consensus 252 ~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqdsLgGnskt~mI~ 328 (699)
....|+|+||||||+|| ++..|.|++|+.+||+||++||+||.+|.+++.||||||||||+||||+||||++|+||+
T Consensus 231 ~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~ 310 (350)
T 2vvg_A 231 VIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCA 310 (350)
T ss_dssp EEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEE
T ss_pred cEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEE
Confidence 34679999999999998 556789999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC--ChhhhHHHHHHHHHhhhccccCCCcccc
Q 005372 329 CLNPG--EYQESVHTVSLAARSRHISNTLPSAQKV 361 (699)
Q Consensus 329 ~VSP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~ 361 (699)
||||+ +++||++||+||+|+|+|+|.+..|...
T Consensus 311 ~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~ 345 (350)
T 2vvg_A 311 NISPASTNYDETMSTLRYADRAKQIKNKPRINEDP 345 (350)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSC
T ss_pred EeCCccccHHHHHHHHHHHHHHhhccccceecCCc
Confidence 99997 5899999999999999999988877653
|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U* | Back alignment and structure |
|---|
| >1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
| >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 | Back alignment and structure |
|---|
| >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 | Back alignment and structure |
|---|
| >2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1 | Back alignment and structure |
|---|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A | Back alignment and structure |
|---|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6 | Back alignment and structure |
|---|
| >2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... | Back alignment and structure |
|---|
| >2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... | Back alignment and structure |
|---|
| >2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... | Back alignment and structure |
|---|
| >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
| >1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 | Back alignment and structure |
|---|
| >1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* | Back alignment and structure |
|---|
| >2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A | Back alignment and structure |
|---|
| >1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A | Back alignment and structure |
|---|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
| >2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
| >3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* | Back alignment and structure |
|---|
| >2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A | Back alignment and structure |
|---|
| >3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} | Back alignment and structure |
|---|
| >2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* | Back alignment and structure |
|---|
| >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
| >1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 | Back alignment and structure |
|---|
| >1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A | Back alignment and structure |
|---|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
| >3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6 | Back alignment and structure |
|---|
| >3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A* | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1 | Back alignment and structure |
|---|
| >2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A | Back alignment and structure |
|---|
| >2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 699 | ||||
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 1e-62 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 4e-58 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 5e-57 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 9e-57 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 1e-55 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-54 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 2e-54 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 5e-54 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 2e-51 | |
| d2duya1 | 65 | a.60.2.7 (A:11-75) Uncharacterized protein TTHA196 | 2e-06 | |
| d3bzka1 | 90 | a.60.2.6 (A:474-563) Transcriptional accessory fac | 4e-06 | |
| d2edua1 | 91 | a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human | 6e-06 | |
| d2i5ha1 | 180 | e.71.1.1 (A:16-195) Hypothetical protein AF1531 {A | 0.003 |
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Score = 209 bits (533), Expect = 1e-62
Identities = 108/336 (32%), Positives = 165/336 (49%), Gaps = 31/336 (9%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
++V+ R RP E+ ++ I S+ Y D
Sbjct: 7 IKVMCRFRPLNESEVNR---GDKYIAKFQGEDTV--------------VIASKPYAFDRV 49
Query: 88 FGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP---GLMPL 144
F S +++ ++ + G N T+FAYG T SGKT+TM+G P G++P
Sbjct: 50 FQ-SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPR 108
Query: 145 AMS----KILSICQSTGSTAEISYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSR 200
+ I S+ ++ ++SY+E+Y+D+ DLL+V +S+ +DK+ ++KG +
Sbjct: 109 IVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTE 168
Query: 201 VPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLNL 260
V S E + G R VA T +N+ SSRSH + +I+V ++ L+GKL L
Sbjct: 169 RFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQE-NTQTEQKLSGKLYL 227
Query: 261 IDLAD---NRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDS 317
+DLA +T EG L E+ IN+SL AL NVI AL VPYR+SK+TRILQDS
Sbjct: 228 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDS 287
Query: 318 LGGTSHALMVACLNPGE--YQESVHTVSLAARSRHI 351
LGG +V C +P E+ T+ R++ I
Sbjct: 288 LGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} Length = 65 | Back information, alignment and structure |
|---|
| >d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Length = 90 | Back information, alignment and structure |
|---|
| >d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
| >d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 699 | |||
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d2duya1 | 65 | Uncharacterized protein TTHA1967 {Thermus thermoph | 99.46 | |
| d3bzka1 | 90 | Transcriptional accessory factor Tex {Pseudomonas | 99.4 | |
| d2edua1 | 91 | KIF22, C-terminal domain {Human (Homo sapiens) [Ta | 99.37 | |
| d2axtu1 | 98 | Photosystem II 12 kDa extrinsic protein PsbU {Ther | 99.33 | |
| d2i5ha1 | 180 | Hypothetical protein AF1531 {Archaeoglobus fulgidu | 98.35 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 97.43 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 97.23 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 97.18 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 96.89 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 96.56 | |
| d1bvsa2 | 71 | DNA helicase RuvA subunit, middle domain {Mycobact | 96.05 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 95.77 | |
| d1cuka2 | 78 | DNA helicase RuvA subunit, middle domain {Escheric | 95.42 | |
| d1ixra1 | 73 | DNA helicase RuvA subunit, middle domain {Thermus | 95.34 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 95.03 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 94.65 | |
| d1bvsa2 | 71 | DNA helicase RuvA subunit, middle domain {Mycobact | 94.12 | |
| d3ci0k1 | 71 | Pseudopilin GspK {Escherichia coli [TaxId: 562]} | 93.92 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 93.5 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 93.34 | |
| d2fmpa2 | 57 | DNA polymerase beta {Human (Homo sapiens) [TaxId: | 93.02 | |
| d1jmsa3 | 60 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 92.94 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 92.93 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.42 | |
| d1ixra1 | 73 | DNA helicase RuvA subunit, middle domain {Thermus | 92.42 | |
| d2fmpa1 | 82 | DNA polymerase beta, N-terminal (8 kD)-domain {Hum | 91.85 | |
| d1cuka2 | 78 | DNA helicase RuvA subunit, middle domain {Escheric | 91.82 | |
| d2bcqa2 | 57 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 91.64 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 91.15 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 90.88 | |
| d1jmsa1 | 95 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 90.24 | |
| d2bcqa1 | 76 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 89.87 | |
| d1dgsa1 | 181 | NAD+-dependent DNA ligase, domain 3 {Thermus filif | 88.15 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 87.6 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 86.58 | |
| d1keaa_ | 217 | Thymine-DNA glycosylase {Archaeon Methanobacterium | 86.33 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 85.57 | |
| d1orna_ | 214 | Endonuclease III {Escherichia coli [TaxId: 562]} | 84.54 | |
| d1kg2a_ | 224 | Catalytic domain of MutY {Escherichia coli [TaxId: | 84.04 | |
| d1rrqa1 | 221 | Catalytic domain of MutY {Bacillus stearothermophi | 83.83 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.36 | |
| d2abka_ | 211 | Endonuclease III {Escherichia coli [TaxId: 562]} | 82.98 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 82.58 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 82.5 | |
| d1wg8a1 | 98 | Putative methyltransferase TM0872, insert domain { | 81.94 |
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=100.00 E-value=7.3e-75 Score=627.09 Aligned_cols=319 Identities=33% Similarity=0.515 Sum_probs=255.9
Q ss_pred CCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcHhHHHHh
Q 005372 22 TSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYS 101 (699)
Q Consensus 22 ~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~~Vf~~ 101 (699)
+...++|+|+|||||+++.|...+ ...++.+.+...+.. .+.............+.|.||+||++++ +|++||+.
T Consensus 26 ~~~~~~I~V~vRvRPl~~~E~~~~---~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~Q~~Vy~~ 100 (362)
T d1v8ka_ 26 PIEEHRICVCVRKRPLNKQELAKK---EIDVISVPSKCLLLV-HEPKLKVDLTKYLENQAFCFDFAFDETA-SNEVVYRF 100 (362)
T ss_dssp TTSCCCEEEEEEECCCCHHHHHTT---CCBCEECCSSSEEEE-EEEEECTTCCEEEEEEEEECSEEECTTC-CHHHHHHH
T ss_pred CCCCCCEEEEEEeCCCChHHhhCC---CceEEEECCCcEEEE-eCCccccccccCcCceeEeCCeecCCCC-CHHHHHHH
Confidence 345678999999999999997654 345666654322111 1111111111122346899999999886 88999999
Q ss_pred hccchhhhhcCCCCEEEEeeccCCCCCcceeccCC------CCCCchHHHHHHHHHhhhc-----CCceeEEEEEEEecc
Q 005372 102 EVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE------ERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMD 170 (699)
Q Consensus 102 ~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~------~~~GIipral~~LF~~~~~-----~~~~v~vS~~EIYnE 170 (699)
.+.|+|+++++|||+||||||||||||||||+|+. .++||+||++++||..++. ..+.|++||+|||||
T Consensus 101 ~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne 180 (362)
T d1v8ka_ 101 TARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNG 180 (362)
T ss_dssp TTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETT
T ss_pred HHHHHHHHHHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhHHHHhhcccccccchhheeeeeeecCC
Confidence 99999999999999999999999999999999974 3689999999999987653 468999999999999
Q ss_pred eeeeccCCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCCC
Q 005372 171 RCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS 250 (699)
Q Consensus 171 ~v~DLL~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~~ 250 (699)
+++|||++.. .+.+++++.+++++.|++++.|.|.+|++.++..|..+|.+++|.+|..|||||+||+|++.+.
T Consensus 181 ~i~DLL~~~~-~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~i~~i~i~~~----- 254 (362)
T d1v8ka_ 181 KVFDLLNKKA-KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK----- 254 (362)
T ss_dssp EEEETTTTTE-EEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS-----
T ss_pred eEEecccCCc-cccccccccCCcccCCCEEEEecCHHHHHHHHhccccccccccccCcccCcceeeEEEEEEEec-----
Confidence 9999998654 5788999999999999999999999999999999999999999999999999999999999753
Q ss_pred CceEEEEEEEEEcCCCccccc----chhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccc-cCCCceeE
Q 005372 251 KAALTGKLNLIDLADNRRTCN----EGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDS-LGGTSHAL 325 (699)
Q Consensus 251 ~~~~~skL~fVDLAGsert~~----~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqds-LgGnskt~ 325 (699)
....++|+||||||+||... .+.++.|+..||+||++|++||.+|++++.|||||+||||+||||+ |||||+|+
T Consensus 255 -~~~~~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT~lLkdsllGgns~t~ 333 (362)
T d1v8ka_ 255 -GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTC 333 (362)
T ss_dssp -SSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEE
T ss_pred -ceeeeeEeeeecccccccccccccchhhhhhhhhhcccHHHHHHHHHHHhcCCCcCCCccCHHHHhhhhccCCCCccEE
Confidence 23579999999999998432 3467889999999999999999999999999999999999999998 79999999
Q ss_pred EEEEeCCC--ChhhhHHHHHHHHHhhhcc
Q 005372 326 MVACLNPG--EYQESVHTVSLAARSRHIS 352 (699)
Q Consensus 326 mI~~VSP~--~~~ETlsTL~fA~rar~I~ 352 (699)
||+||||+ +++||++||+||+|||+|.
T Consensus 334 ~i~~vsp~~~~~~eTl~TL~fa~rak~It 362 (362)
T d1v8ka_ 334 MIAMISPGISSCEYTLNTLRYADRVKELS 362 (362)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhcCC
Confidence 99999997 6899999999999999883
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} | Back information, alignment and structure |
|---|
| >d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
| >d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
|---|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|