Citrus Sinensis ID: 005393

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70
MSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF
ccHHHHHHcccccccccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHccHHccccccccEEEEEcccccEEEEcHHHHHHcccccccccccccccccccccccccHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccHHcEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHccccEEEEEccccEEEEcccccccccccccccEEEEcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
ccHHHHHHHcccccccccccHEEcccccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccEEcccccccEEEccccccccccHHHHHHHHHHHcccccccccEEEcccccccccccccccccccccccccccccccccEEEcccccccccccHHccccccccEEHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccEEEccccccccccccHHHHHHHHHccccEEEEcHHHccccccccHHHHHHHHHHHcccccccccccEEEEEcccccEEEccHHHHHccccccccccccccEEEEEccccccHHHHHHccHHHHHHHHccccccccccccccEEEEEEcccccccccccccEEEEEccccHcccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHcccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHccccEEEEEccccEEEEEcccccHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
mseldvaeicpfcrrncncsvclhtsgfietskinmtdceKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRvhsskvgvsetlcgndervycnhCATSIidlhrscpkcsyelcLTCCKEICEGRLSGRAEMKFQYVnrgygymqggdplpesclhqtpdvhvepsvmwsaddngtiscpptemggcgdcVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKaasregsddnllycpdstkiqEDEELFRFQKhwikgepvIVRNVLdkvtglswepMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFfkgytqgrtydnfwpemlklkdwppsdkfedlmprhcdefisalpfqeysdpraGILNLAVklpsgvlkpdlgpktyIAYGVAeelgrgdsvtklhCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVqdgmdesieepnsdnnkedtdvseindsellpsgirgefkmsrdemqgtaftcphsegtmvesggALWDIFRRQDVPKLEAYLRKHFKEFrhvycspveqvihpihdqcfyLSSEHKKKLkeefgvepwtfeqklgeavfipagcphqvrnlkscTKVAvdfvspenvDECLRLTKEFRllpknhrarEDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF
MSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLIldnkltnlrqnraetgtDMLCKAAsregsddnllyCPDSTKIQEDEELFRFQkhwikgepvivRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKEnlvqdgmdesieepnsdnnkedtdvseindsellpsgIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKefrllpknhraredkLEVYLVFIKRKCYVHEISSSFVFILLTHIFF
MSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIlthteevllteeQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYlssehkkklkeeFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF
****DVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQ*********L***********NLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLL*****************************************************************************C****GTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIF*
*SELDVAEICPFCRRNCNCSVCLHTSG***********CEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEA**********GVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCK*****************VN*******************************SADDNGTISCPPTEMGGCGDCVLELTRIL***************VLILDNKL*************************DNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKK****************************************************************************GALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF
MSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENV*********EVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMD*****************SEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF
MSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNR*************************PSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDL*******************************************************************SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF
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MSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query698 2.2.26 [Sep-21-2011]
Q5ZIX81325 Lysine-specific demethyla yes no 0.531 0.28 0.337 3e-54
Q9Y4C11321 Lysine-specific demethyla yes no 0.531 0.280 0.334 5e-53
Q6IRB81331 Lysine-specific demethyla N/A no 0.495 0.259 0.337 2e-50
Q5HZN11334 Lysine-specific demethyla N/A no 0.501 0.262 0.336 6e-50
Q6PCM11323 Lysine-specific demethyla yes no 0.534 0.281 0.313 2e-45
Q636791214 Lysine-specific demethyla yes no 0.531 0.305 0.316 6e-45
Q7LBC61761 Lysine-specific demethyla no no 0.184 0.073 0.518 5e-29
Q6ZPY71562 Lysine-specific demethyla no no 0.184 0.082 0.518 2e-28
P976091181 Protein hairless OS=Rattu no no 0.435 0.257 0.280 2e-22
O435931189 Protein hairless OS=Homo no no 0.415 0.243 0.256 2e-20
>sp|Q5ZIX8|KDM3A_CHICK Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1 Back     alignment and function desciption
 Score =  213 bits (543), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 162/480 (33%), Positives = 220/480 (45%), Gaps = 109/480 (22%)

Query: 220  ILDNKLTNLRQNRAETGTDM------LCKAASREGSD-------DNLLYCPDSTKIQEDE 266
            ILD+   +L QNR  T TDM      L    +  G D       DN L C      + + 
Sbjct: 909  ILDDIFASLVQNR--TVTDMPKKPQGLTIKPTIMGFDTPHYWLCDNRLLCLQDPNNESNW 966

Query: 267  ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 326
             +FR  + W +G+PV+V  V  K+    W P        E+   E   +  EV  ++C  
Sbjct: 967  NVFR--ECWKQGQPVMVSGVHHKLNADLWRP--------ESFRKEFGQQ--EVDLVNC-- 1012

Query: 327  SCEVEISTRQFFKGYTQGRTYDNFW------------PEMLKLKDWPPSDKFEDLMPRHC 374
                   T +   G T G  +D F             P +LKLKDWPP + F D+MP   
Sbjct: 1013 ------RTNEIITGATVGDFWDGFEDISSRLRTEEGEPMVLKLKDWPPGEDFRDMMPSRF 1066

Query: 375  DEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC 434
            D+ +  +P  EY+  R G LNLA +LP+  ++PDLGPK Y AYG+     R    T LH 
Sbjct: 1067 DDLMKNIPLPEYTR-RGGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHL 1125

Query: 435  DMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKE 494
            D+SDA N++ +             + + + +   + LK   +QDG               
Sbjct: 1126 DVSDAANVMVYV-----------GIPKGQADQEEEVLK--TIQDG--------------- 1157

Query: 495  DTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPK 554
            D+D   I             F  SR                  E  GALW I+  +D  K
Sbjct: 1158 DSDELTIK-----------RFTESR------------------EKPGALWHIYAAKDTEK 1188

Query: 555  LEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEA 614
            +  +L+K  +E      +PV+    PIHDQ +YL    +K+L +E+GV+ W   Q LG+ 
Sbjct: 1189 IREFLKKVAEE--QGQENPVDH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDV 1244

Query: 615  VFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVF 674
            VFIPAG PHQV NL SC KVA DFVSPE+V  C  LT+EFR L   H   EDKL+V  V 
Sbjct: 1245 VFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQVKNVI 1304
Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Preferentially demethylates mono- and dimethylated H3 'Lys-9' residue, with a preference for dimethylated residue, while it has weak or no activity on trimethylated H3 'Lys-9'. Demethylation of Lys residue generates formaldehyde and succinate.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q9Y4C1|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4 Back     alignment and function description
>sp|Q6IRB8|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2 SV=1 Back     alignment and function description
>sp|Q5HZN1|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2 SV=1 Back     alignment and function description
>sp|Q6PCM1|KDM3A_MOUSE Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1 Back     alignment and function description
>sp|Q63679|KDM3A_RAT Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1 Back     alignment and function description
>sp|Q7LBC6|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2 Back     alignment and function description
>sp|Q6ZPY7|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2 Back     alignment and function description
>sp|P97609|HAIR_RAT Protein hairless OS=Rattus norvegicus GN=Hr PE=2 SV=2 Back     alignment and function description
>sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query698
255554791 1122 conserved hypothetical protein [Ricinus 0.939 0.584 0.671 0.0
356564476 843 PREDICTED: uncharacterized protein LOC10 0.918 0.760 0.628 0.0
224118074693 predicted protein [Populus trichocarpa] 0.899 0.906 0.635 0.0
356520089 843 PREDICTED: uncharacterized protein LOC10 0.899 0.744 0.632 0.0
359483388 864 PREDICTED: uncharacterized protein LOC10 0.924 0.746 0.623 0.0
147800953 1016 hypothetical protein VITISV_038746 [Viti 0.922 0.633 0.631 0.0
224115858700 predicted protein [Populus trichocarpa] 0.908 0.905 0.638 0.0
356557939 1043 PREDICTED: uncharacterized protein LOC10 0.906 0.606 0.627 0.0
357480367 870 Lysine-specific demethylase 3A-B [Medica 0.932 0.748 0.615 0.0
186478394 875 Transcription factor jumonji (jmjC) doma 0.904 0.721 0.605 0.0
>gi|255554791|ref|XP_002518433.1| conserved hypothetical protein [Ricinus communis] gi|223542278|gb|EEF43820.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/670 (67%), Positives = 537/670 (80%), Gaps = 14/670 (2%)

Query: 10   CPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEF 69
            CPFCRRNCNC++CLH+SG I+TSK ++TD EKV+HL+YL+ S+LPF+ QICEEQT E++ 
Sbjct: 443  CPFCRRNCNCNICLHSSGLIKTSKRDITDREKVQHLQYLIKSMLPFLEQICEEQTCEMQI 502

Query: 70   EASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGR 129
            EASIQ    S   ++E  C NDERVYCNHCATSI+D HRSCPKC+YELCL CCKEI EG 
Sbjct: 503  EASIQ---GSSPEIAENFCNNDERVYCNHCATSIVDFHRSCPKCAYELCLGCCKEIREGS 559

Query: 130  LSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSV-MWSADDNGTISCPPTEM 188
            LS  AE++  YVNRGY YM GGDPLP  C  +  D  +EP V +W+A+++G+ISC P EM
Sbjct: 560  LSSHAEIELHYVNRGYDYMHGGDPLP--CDSKNLDDQIEPLVTLWNANNDGSISCAPKEM 617

Query: 189  GGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREG 248
            GGCGD +LEL RILP  WIS+L  + R+L+ + DN+ T+L  N +E G+D L KAASREG
Sbjct: 618  GGCGDNLLELKRILPMGWISELIWKGRELLKLFDNEKTSLMCNYSEPGSDTLRKAASREG 677

Query: 249  SDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENV 308
            S+DN L+CP    IQ D+EL RFQKHW+KGEPVIVR+ L+  T LSWEPMVMWRALCENV
Sbjct: 678  SEDNYLFCPALNGIQADQELLRFQKHWLKGEPVIVRDTLEVTTHLSWEPMVMWRALCENV 737

Query: 309  DSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFED 368
            D E ++KMSEVKAIDCLASC+VEI+TRQFFKGYT GRTY+NFWPEMLKLKDWPPSDKFED
Sbjct: 738  DLETNAKMSEVKAIDCLASCQVEINTRQFFKGYTGGRTYENFWPEMLKLKDWPPSDKFED 797

Query: 369  LMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDS 428
            L+PRHCDEFISALPFQEYSDP+AGILN+AVK P G+LKPDLGPKTYIAYG  EELGRGDS
Sbjct: 798  LLPRHCDEFISALPFQEYSDPKAGILNIAVKFPPGLLKPDLGPKTYIAYGTKEELGRGDS 857

Query: 429  VTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPN 488
            VTKLHCDMSDAVNILTH  EV L+EEQ + +E+LK +H AQD KE L +D ++  + E  
Sbjct: 858  VTKLHCDMSDAVNILTHAVEVALSEEQSTCIEQLKMKHSAQDEKEYLERDKVNSHLIEQL 917

Query: 489  S---DNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWD 545
                D+  ED D+ +I ++E   S +  +     +E++G   T   +      S GALWD
Sbjct: 918  DECIDSLSEDMDLLKIRETEKHSSALETD-----NELRGDTPTDESTGAATAGSSGALWD 972

Query: 546  IFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPW 605
            IFRR+DVPKLE YLRK+  EFRH YCSPVE+V+HPIHDQCFYL+ EHK+KLKEE+GVEPW
Sbjct: 973  IFRREDVPKLEEYLRKYHMEFRHTYCSPVEKVVHPIHDQCFYLTLEHKRKLKEEYGVEPW 1032

Query: 606  TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRARE 665
            TFEQ++GEA+FIPAGCPHQVRNLKSCTKVAVDFVSPEN+ ECL LT+EFR LPKNHRARE
Sbjct: 1033 TFEQRVGEAIFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLLLTEEFRQLPKNHRARE 1092

Query: 666  DKLEVYLVFI 675
            DKLE+  + +
Sbjct: 1093 DKLEIKKMIV 1102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356564476|ref|XP_003550480.1| PREDICTED: uncharacterized protein LOC100806419 [Glycine max] Back     alignment and taxonomy information
>gi|224118074|ref|XP_002331551.1| predicted protein [Populus trichocarpa] gi|222873775|gb|EEF10906.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356520089|ref|XP_003528698.1| PREDICTED: uncharacterized protein LOC100797860 [Glycine max] Back     alignment and taxonomy information
>gi|359483388|ref|XP_002264179.2| PREDICTED: uncharacterized protein LOC100250303 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147800953|emb|CAN60121.1| hypothetical protein VITISV_038746 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115858|ref|XP_002317142.1| predicted protein [Populus trichocarpa] gi|222860207|gb|EEE97754.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356557939|ref|XP_003547267.1| PREDICTED: uncharacterized protein LOC100801772 [Glycine max] Back     alignment and taxonomy information
>gi|357480367|ref|XP_003610469.1| Lysine-specific demethylase 3A-B [Medicago truncatula] gi|355511524|gb|AES92666.1| Lysine-specific demethylase 3A-B [Medicago truncatula] Back     alignment and taxonomy information
>gi|186478394|ref|NP_172659.3| Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gi|225897914|dbj|BAH30289.1| hypothetical protein [Arabidopsis thaliana] gi|332190699|gb|AEE28820.1| Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query698
TAIR|locus:2008875875 AT1G11950 "AT1G11950" [Arabido 0.697 0.556 0.602 9.1e-220
TAIR|locus:2027109883 AT1G62310 "AT1G62310" [Arabido 0.713 0.563 0.580 3e-216
TAIR|locus:2125221840 AT4G00990 "AT4G00990" [Arabido 0.700 0.582 0.417 2.1e-153
TAIR|locus:2036014944 AT1G09060 "AT1G09060" [Arabido 0.676 0.5 0.352 2.4e-106
TAIR|locus:2141221927 B160 "AT4G21430" [Arabidopsis 0.691 0.521 0.312 2.9e-76
MGI|MGI:19233561562 Kdm3b "KDM3B lysine (K)-specif 0.184 0.082 0.481 2e-49
UNIPROTKB|E1BE971759 LOC100848816 "Uncharacterized 0.184 0.073 0.481 2.5e-49
UNIPROTKB|Q7LBC61761 KDM3B "Lysine-specific demethy 0.184 0.073 0.481 2.5e-49
UNIPROTKB|F1NJZ21755 KDM3B "Uncharacterized protein 0.184 0.073 0.481 4e-49
UNIPROTKB|F1RH751766 KDM3B "Uncharacterized protein 0.184 0.073 0.481 5.2e-49
TAIR|locus:2008875 AT1G11950 "AT1G11950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1577 (560.2 bits), Expect = 9.1e-220, Sum P(3) = 9.1e-220
 Identities = 295/490 (60%), Positives = 363/490 (74%)

Query:     1 MSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQIC 60
             +S  D+ E CPFCR  CNC  CLH+SG IETSK  +   E+  HLR+L+V++LPF++++C
Sbjct:   227 LSTDDILEKCPFCRGTCNCCTCLHSSGLIETSKRKLDKYERFYHLRFLIVAMLPFLKKLC 286

Query:    61 EEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLT 120
             + Q QEIE EA +Q   +S+V +SE+LC N+ERV+CNHCATSI+DLHRSCPKCSYELCL 
Sbjct:   287 KAQDQEIETEAKVQDSMASQVDISESLCSNEERVFCNHCATSIVDLHRSCPKCSYELCLN 346

Query:   121 CCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGT 180
             CC+EI  G LS R E + Q+  RG  Y+ G    P S    + D    PS+ W+AD+NG+
Sbjct:   347 CCQEIRGGWLSDRPECQLQFEYRGTRYIHGEAAEPSSS-SVSEDETKTPSIKWNADENGS 405

Query:   181 ISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDML 240
             I C P E+GGCGD VLEL RILP  W+SDLE++A   +     K        +   + M 
Sbjct:   406 IRCAPKELGGCGDSVLELKRILPVTWMSDLEQKAETFLASYSIKPPMSYCRCSSDMSSMK 465

Query:   241 CKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVM 300
              KAASR+GS DN LY PDS  + + EEL  FQ+HW KGEPVIVRN L+   GLSWEPMVM
Sbjct:   466 RKAASRDGSSDNYLYSPDSLDVLKQEELLHFQEHWSKGEPVIVRNALNNTAGLSWEPMVM 525

Query:   301 WRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDW 360
             WRALCENVDS +SS MS+VKAIDCLA+CEV+I+T  FF+GY++GRTY+NFWPEMLKLKDW
Sbjct:   526 WRALCENVDSAISSNMSDVKAIDCLANCEVKINTLCFFEGYSKGRTYENFWPEMLKLKDW 585

Query:   361 PPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVA 420
             PPSDKFE+L+PRHCDEFISALPFQEYSDPR+GILN+A KLP G+LKPDLGPKTY+AYG +
Sbjct:   586 PPSDKFENLLPRHCDEFISALPFQEYSDPRSGILNIATKLPEGLLKPDLGPKTYVAYGTS 645

Query:   421 EELGRGDSVTKLHCDMSDAVNIXXXXXXXXXXXXQHSAVERLKKEHRAQDLKENLVQDGM 480
             +ELGRGDSVTKLHCDMSDAVNI            Q SA+  LK++H+ Q+ KE   Q+G+
Sbjct:   646 DELGRGDSVTKLHCDMSDAVNILMHTAEVTLSEEQRSAIADLKQKHKQQNEKELQEQNGL 705

Query:   481 DESIEEPNSD 490
             +E  EE  SD
Sbjct:   706 EE--EEVVSD 713
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2027109 AT1G62310 "AT1G62310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125221 AT4G00990 "AT4G00990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036014 AT1G09060 "AT1G09060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141221 B160 "AT4G21430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1923356 Kdm3b "KDM3B lysine (K)-specific demethylase 3B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BE97 LOC100848816 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q7LBC6 KDM3B "Lysine-specific demethylase 3B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJZ2 KDM3B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RH75 KDM3B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.166.62.1
hypothetical protein (657 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query698
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 2e-15
smart0055858 smart00558, JmjC, A domain family that is part of 3e-08
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information 
 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 28/112 (25%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 528 TCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRK-HFKEFRHVYCSPVEQVIHPIHDQCF 586
           T  H E          +  F    V  +        F++      S       P      
Sbjct: 11  TPWHIE--DQGLYSINYLHFGGPKVWYIIPSEYAEKFEKV----LSKHNGGEQPDL-LLH 63

Query: 587 YLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDF 638
             +    K+L E  G+  + F QK GE VF   G  HQV NL      AV+F
Sbjct: 64  LNTIISPKQLLEN-GIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114
>gnl|CDD|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 698
KOG1356889 consensus Putative transcription factor 5qNCA, con 100.0
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 99.52
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 99.04
smart0055857 JmjC A domain family that is part of the cupin met 96.83
KOG2131427 consensus Uncharacterized conserved protein, conta 96.66
cd0234043 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre 95.95
KOG1356889 consensus Putative transcription factor 5qNCA, con 95.66
PF10497105 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida 95.62
cd0224946 ZZ Zinc finger, ZZ type. Zinc finger present in dy 95.4
cd0233549 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present 95.28
cd0233945 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre 94.9
PF0056946 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc 94.74
smart0029144 ZnF_ZZ Zinc-binding domain, present in Dystrophin, 93.95
cd0234445 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present 93.47
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 93.39
cd0234148 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present 92.91
KOG2130407 consensus Phosphatidylserine-specific receptor Ptd 92.89
COG1917131 Uncharacterized conserved protein, contains double 92.88
cd0233849 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre 91.52
cd0234549 ZZ_dah Zinc finger, ZZ type. Zinc finger present i 91.21
COG0662127 {ManC} Mannose-6-phosphate isomerase [Carbohydrate 90.4
cd0233741 ZZ_CBP Zinc finger, ZZ type. Zinc finger present i 89.43
TIGR03214260 ura-cupin putative allantoin catabolism protein. T 87.72
cd0233449 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr 85.31
PRK09943185 DNA-binding transcriptional repressor PuuR; Provis 83.44
cd0234348 ZZ_EF Zinc finger, ZZ type. Zinc finger present in 83.19
PF0764930 C1_3: C1-like domain; InterPro: IPR011424 This sho 82.86
PRK13290125 ectC L-ectoine synthase; Reviewed 82.72
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-176  Score=1471.88  Aligned_cols=600  Identities=43%  Similarity=0.711  Sum_probs=539.4

Q ss_pred             CChhHHHhhCcCcCCCcccccccCCCCCccccccC----CChHHHHHHHH--HHHHHHhhhhHhhcHHHhhhhhhhhhhc
Q 005393            1 MSELDVAEICPFCRRNCNCSVCLHTSGFIETSKIN----MTDCEKVEHLR--YLMVSLLPFIRQICEEQTQEIEFEASIQ   74 (698)
Q Consensus         1 ls~~ei~~~CP~CrgnCNCk~CLr~~~~i~~~k~e----~s~~~k~~~~~--yll~~lLP~lkqi~~EQ~~E~e~Eaki~   74 (698)
                      ++.+|++++|+||+.+|||.+|++.++++.+.+..    .+..+++.++.  |+|..++|+|+.++..|-.+.+.||+||
T Consensus       265 ~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq  344 (889)
T KOG1356|consen  265 LSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALLDLSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQ  344 (889)
T ss_pred             chHhHhhhhhhHHHHhcCCccccchhhcccccccchhhhhhHHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHh
Confidence            46899999999999999999999999999988777    77789999999  9999999999999999999999999999


Q ss_pred             cccCCcccccccccCCCCceecCCCccccccccccCCCCCcccchhchHHHhcCcCCCccccceeeeccCCccccCCCCC
Q 005393           75 RVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPL  154 (698)
Q Consensus        75 G~~~se~~i~~a~~~~DERvyCD~C~TSI~D~HRsC~~CsydLCL~CC~ELR~g~~~g~~~~~~~~~~~g~~~~~g~~~~  154 (698)
                      |..++. +++.+...++|++|||+|.|||.|+||+||+|+|++||.||.+||+|.+.-..+..+.|.+||..|.||.++.
T Consensus       345 ~~~~~~-~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~~~~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~  423 (889)
T KOG1356|consen  345 GTEPTS-KPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSYAICLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPI  423 (889)
T ss_pred             cCCCCC-CccccccCcCCCccccccccchhhccccCCCccccccchHHHHhhcCCcccchhHHHHHHHHHHHhhcCcccc
Confidence            999988 7777778889999999999999999999999999999999999999988777666889999999999998876


Q ss_pred             CCccCCCCCCCCCCCCcccccCCCCCccCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHHHhcccccccccC-cc
Q 005393          155 PESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQN-RA  233 (698)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~W~a~~dgsI~CpP~e~ggCg~~~L~L~~if~~~~i~~L~~~aee~~~~~~~~~~~~~~c-~~  233 (698)
                      ..+-.......   +++   ++++|+|.|-|...+||+...|+|+|++|.-|.+.++.+||.-+..+.+.... .-| +.
T Consensus       424 ~~~~~s~~~~~---~~~---~~~ng~~r~l~~~~~g~~~~~l~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l-~~~~~~  496 (889)
T KOG1356|consen  424 EPSLSSVSVDE---PSS---ANENGSLRDLLLSLAGCLDRGLKLKRILPNILDSIIASVVENKLTSKLSKPPL-RLCRSS  496 (889)
T ss_pred             ccccCCCCCCC---Ccc---cccccchhhcccccCccchhhhhhhhcCchHHHHHHHHHHHhhcccccCCchh-hcCccc
Confidence            54322211111   112   88999999999999999999999999999999999999999888775554432 233 22


Q ss_pred             cCCcccchhcccccCCCCCeeecCCCCCCCchhhHHHHHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhcccccc
Q 005393          234 ETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVS  313 (698)
Q Consensus       234 ~~~~~~~r~aa~re~s~dn~lYcP~~~d~~~~~~~~~FQ~hW~kGePVIVr~vl~~~s~lsW~P~~mwra~~e~~~~~~~  313 (698)
                      ..+.+.++++|.|+.+.|||||||.+.+.+. +|+.|||+||++|||||||||++++++++|+||+|||+|+++.+.-..
T Consensus       497 ~~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~-~n~~~FQEhWkqGqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n  575 (889)
T KOG1356|consen  497 QDGSGLLLSAASHSWLCDNRLLSLKVDPLNQ-NNLKHFQEHWKQGQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSN  575 (889)
T ss_pred             cccccCccccCCCCcCCCCceecCccCccch-hHHHHHHHHHhcCCcEEehHhhhhccccccchHHHHHHhccchhhhhc
Confidence            3456778999999999999999999955555 999999999999999999999999999999999999999998776666


Q ss_pred             ccCCceeEeecCCCceeecchhhhhccccCCccCCCCccceeecCCCCCCCchhhhcccchHHHHhCCCCcccCCCCCcc
Q 005393          314 SKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGI  393 (698)
Q Consensus       314 ~~~~~vkaidCl~~~evei~~~~Ff~Gy~~gr~~~~~wp~mLKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~  393 (698)
                      ..+.++.++||++      ++.+||.||++|+++++|||+|||||||||+++|+++||+||+|||++|||||||| |+|.
T Consensus       576 ~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~  648 (889)
T KOG1356|consen  576 CNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGK  648 (889)
T ss_pred             CCCCCccccchhh------hHHHhhcccccCcccccCCeeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCc
Confidence            6777888899887      78999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             ccccccCCCCCCCCCCCcchhhccccccccCCCCCcccccccccccchhhhcccccccchhhHHHHHHHHHHHHhhhhhh
Q 005393          394 LNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKE  473 (698)
Q Consensus       394 LNLA~~LP~~~lkPDLGPK~YIAYG~~eelg~gdSvTkLH~DmSDAVNiL~h~~ev~~~~~~~~~i~~l~~~~~~q~~~e  473 (698)
                      ||||++||.++++||||||||||||+++++|||||||||||||||||||||||++++.   +...|++++++..+++..|
T Consensus       649 LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~dvSDaVNILvyv~e~~~---~~~~~~~~~k~~~~~~~de  725 (889)
T KOG1356|consen  649 LNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLDVSDAVNILVYVGEPPG---QIEQIAKVLKKIQEGDLDE  725 (889)
T ss_pred             cchHhhCcccccCCCCCchhhhhccccccccCCCCceeeceehhhhhhheeeeccCCc---hHHhHHHHHHhhhhcchhh
Confidence            9999999999999999999999999999999999999999999999999999998876   4455666666665544322


Q ss_pred             hhccCCCCccccCCCCCCCCCCCccccccccCCCCCCcccccccccccccCCccccCCCCCCcCCCCceEEEeecCCChh
Q 005393          474 NLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVP  553 (698)
Q Consensus       474 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~  553 (698)
                      +...                      ++                .                +..+.+|||||||||||||
T Consensus       726 ~~~~----------------------~~----------------~----------------~~~e~~GALWhIF~~~Dv~  751 (889)
T KOG1356|consen  726 ITRS----------------------RI----------------S----------------SVSETPGALWHIFRAQDVP  751 (889)
T ss_pred             hhhh----------------------hc----------------c----------------ccccCCcchhhhhhhcchH
Confidence            2110                      00                0                0136899999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCccccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccccccccc
Q 005393          554 KLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTK  633 (698)
Q Consensus       554 KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIK  633 (698)
                      ||||||+||++||+|    ++.+|+||||||+||||++||+|||||||||||||+|+||||||||||||||||||+||||
T Consensus       752 KireyL~k~~~E~~~----~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCik  827 (889)
T KOG1356|consen  752 KIREYLRKVCKEQGH----EVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIK  827 (889)
T ss_pred             HHHHHHHHhhHHhcC----CCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHH
Confidence            999999999999998    7899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCcccHHHHHHHHHHhhcCCchhhcccchhhhhheeeee
Q 005393          634 VAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKR  677 (698)
Q Consensus       634 VAlDFVSPEnV~ec~rLteEfR~Lp~~H~~keDkLevkkm~l~~  677 (698)
                      ||+||||||||.||+|||+|||+||++|.|||||||||||+||+
T Consensus       828 Va~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqvK~mi~hA  871 (889)
T KOG1356|consen  828 VAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQVKNMIYHA  871 (889)
T ss_pred             HHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type Back     alignment and domain information
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression Back     alignment and domain information
>cd02249 ZZ Zinc finger, ZZ type Back     alignment and domain information
>cd02335 ZZ_ADA2 Zinc finger, ZZ type Back     alignment and domain information
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type Back     alignment and domain information
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>cd02344 ZZ_HERC2 Zinc finger, ZZ type Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type Back     alignment and domain information
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type Back     alignment and domain information
>cd02345 ZZ_dah Zinc finger, ZZ type Back     alignment and domain information
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02337 ZZ_CBP Zinc finger, ZZ type Back     alignment and domain information
>TIGR03214 ura-cupin putative allantoin catabolism protein Back     alignment and domain information
>cd02334 ZZ_dystrophin Zinc finger, ZZ type Back     alignment and domain information
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional Back     alignment and domain information
>cd02343 ZZ_EF Zinc finger, ZZ type Back     alignment and domain information
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines Back     alignment and domain information
>PRK13290 ectC L-ectoine synthase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query698
2ypd_A392 Crystal Structure Of The Jumonji Domain Of Human Ju 2e-17
2ypd_A392 Crystal Structure Of The Jumonji Domain Of Human Ju 4e-17
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392 Back     alignment and structure 
Iteration: 1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 14/175 (8%)
Query: 271 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 330
           F++ W +G+P +V  V  K+       + +W+A  E++  +     +++  ++C  S   
Sbjct: 27  FKECWKQGQPAVVSGVHKKMN------ISLWKA--ESISLDFGDHQADL--LNCKDSIIS 76
Query: 331 EISTRQFFKGYTQ-GRTYDNFWPE--MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYS 387
             + ++F+ G+ +  +   N   E  +LKLKDWP  + F+ +MP   ++ + +LP  EY 
Sbjct: 77  NANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYC 136
Query: 388 DPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNI 442
           +P  G  NLA  LP   ++PDLGP+   AYGV          T LH ++SD VNI
Sbjct: 137 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNI 190
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query698
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 5e-09
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 2e-07
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 1e-06
3k3o_A371 PHF8, PHD finger protein 8; histone demethylase, c 3e-06
3kv9_A397 JMJC domain-containing histone demethylation prote 4e-06
4ask_A 510 Lysine-specific demethylase 6B; oxidoreductase, KD 1e-05
3pua_A392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 2e-05
2yu1_A451 JMJC domain-containing histone demethylation PROT; 1e-04
3kv5_D488 JMJC domain-containing histone demethylation prote 3e-04
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 4e-04
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 80.3 bits (197), Expect = 1e-15
 Identities = 107/715 (14%), Positives = 192/715 (26%), Gaps = 214/715 (29%)

Query: 38  DCEKVEH-LRY---LMVSLLPFIRQI-C---EEQTQEIEFEASIQRVHSSKVGVSET--- 86
           D E  EH  +Y   L V    F+    C   ++  + I  +  I  +  SK  VS T   
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 87  ---LCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNR 143
              L    E +        + ++ R     +Y+  ++  K       S    M  +  +R
Sbjct: 68  FWTLLSKQEEMV----QKFVEEVLRI----NYKFLMSPIKTEQRQP-SMMTRMYIEQRDR 118

Query: 144 GYGYMQGGDPLP----------ESCLHQ---TPDVHVEPSVMWSADDNGTISCPPTEMGG 190
            Y   Q                   L +     +V ++          G        + G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----------G--------VLG 160

Query: 191 CGDCVL--------ELTRILPDR--WIS-DLEKEARDLVLILDNKLTNLRQNRAETGTDM 239
            G   +        ++   +  +  W++         ++ +L   L  +  N        
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-------- 212

Query: 240 LCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMV 299
                SR     N+     S +     EL R  K       ++   VL  V         
Sbjct: 213 ---WTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLL---VLLNV----QNAKA 258

Query: 300 MWRAL---CENVDSEVSSKMSEVKAIDCL-ASCEVEISTRQFFKGYTQGRTYDNF--WPE 353
            W A    C+ +   ++++  +V   D L A+    IS        T          + +
Sbjct: 259 -WNAFNLSCKIL---LTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 354 MLKLKDWPPSDKFEDLMPRHCD---EFISALP--FQEYSDPRAGILNLAVKLPSGVLKPD 408
             + +D P         PR      E I      +  +       L   ++    VL+P 
Sbjct: 313 C-RPQDLPREVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 409 LGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVER-LKKEHR 467
              K +    V                   + +I T    ++  +   S V   + K H+
Sbjct: 370 EYRKMFDRLSV----------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 468 AQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAF 527
              +++                   KE T    I    L       E K+  +       
Sbjct: 414 YSLVEK-----------------QPKEST--ISIPSIYL-------ELKVKLENEYAL-- 445

Query: 528 TCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQ--C 585
              H                R      ++ Y     K F      P      P  DQ   
Sbjct: 446 ---H----------------RSI----VDHY--NIPKTFDSDDLIP------PYLDQYFY 474

Query: 586 FYLSSEHKKKLK--EEFGVEPWTF------EQKLGEAVFIPAGCPHQVRNLKSCTKVAVD 637
            ++   H K ++  E   +    F      EQK+             + N          
Sbjct: 475 SHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQ------Q 526

Query: 638 FVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFIL 692
                     L+  K +  +  N    E  +   L F+ +    + I S +  +L
Sbjct: 527 ----------LKFYKPY--ICDNDPKYERLVNAILDFLPK-IEENLICSKYTDLL 568
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336 Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371 Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397 Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392 Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query698
2ypd_A392 Probable JMJC domain-containing histone demethyla 100.0
4gjz_A235 Lysine-specific demethylase 8; JMJC, beta barrel, 99.23
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 99.14
3al5_A338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 98.93
2yu1_A451 JMJC domain-containing histone demethylation PROT; 98.91
3k3o_A371 PHF8, PHD finger protein 8; histone demethylase, c 98.9
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 98.84
3kv5_D488 JMJC domain-containing histone demethylation prote 98.81
3kv9_A397 JMJC domain-containing histone demethylation prote 98.8
3d8c_A349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 98.8
3pua_A392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 98.69
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 97.52
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 97.24
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 97.15
4ask_A 510 Lysine-specific demethylase 6B; oxidoreductase, KD 96.59
3dxt_A354 JMJC domain-containing histone demethylation PROT; 96.22
3opt_A373 DNA damage-responsive transcriptional repressor R; 95.32
2ox0_A381 JMJC domain-containing histone demethylation PROT; 95.18
1vrb_A342 Putative asparaginyl hydroxylase; 2636534, structu 93.18
2opk_A112 Hypothetical protein; putative mannose-6-phosphate 92.02
1yhf_A115 Hypothetical protein SPY1581; structural genomics, 91.55
3lag_A98 Uncharacterized protein RPA4178; functionally unkn 91.51
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 91.4
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 91.31
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 91.17
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 91.11
2q30_A110 Uncharacterized protein; double-stranded beta-heli 90.77
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 90.69
3h8u_A125 Uncharacterized conserved protein with double-STR 90.39
1v70_A105 Probable antibiotics synthesis protein; structural 90.23
4e2g_A126 Cupin 2 conserved barrel domain protein; MCSG, PSI 89.93
2fqp_A97 Hypothetical protein BP2299; double-stranded beta- 89.76
2b8m_A117 Hypothetical protein MJ0764; structural genomics, 89.63
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 89.59
2ozj_A114 Cupin 2, conserved barrel; cupin superfamily prote 89.49
1juh_A350 Quercetin 2,3-dioxygenase; cupin, glycoprotein, be 89.46
1o5u_A101 Novel thermotoga maritima enzyme TM1112; cupin, st 89.13
3d82_A102 Cupin 2, conserved barrel domain protein; structur 89.01
2xlg_A239 SLL1785 protein, CUCA; metal binding protein, cupi 88.76
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 88.49
2gu9_A113 Tetracenomycin polyketide synthesis protein; X-RAY 88.33
3kgz_A156 Cupin 2 conserved barrel domain protein; metallopr 88.21
3ibm_A167 Cupin 2, conserved barrel domain protein; cupin 2 88.04
2ozi_A98 Hypothetical protein RPA4178; APC6210, putative pr 87.63
3h7j_A243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 87.22
2i45_A107 Hypothetical protein; neisseria meningitidis cupin 85.97
1y9q_A192 Transcriptional regulator, HTH_3 family; transcrip 85.74
1lr5_A163 Auxin binding protein 1; beta jellyroll, double st 84.51
3cew_A125 Uncharacterized cupin protein; all beta-protein, j 84.47
2oa2_A148 BH2720 protein; 10175341, structural genomics, joi 84.35
4axo_A151 EUTQ, ethanolamine utilization protein; structural 84.1
3jzv_A166 Uncharacterized protein RRU_A2000; structural geno 84.1
3l2h_A162 Putative sugar phosphate isomerase; AFE_0303, stru 84.07
1vj2_A126 Novel manganese-containing cupin TM1459; structura 83.42
3lwc_A119 Uncharacterized protein; structural genomics, unkn 83.07
4i4a_A128 Similar to unknown protein; structural genomics, P 82.46
1x82_A190 Glucose-6-phosphate isomerase; cupin superfamily, 82.03
2o8q_A134 Hypothetical protein; cpuin-like fold, structural 81.69
3bcw_A123 Uncharacterized protein; structural genomics, join 81.63
3rns_A227 Cupin 2 conserved barrel domain protein; structura 81.33
4h7l_A157 Uncharacterized protein; structural genomics, PSI- 80.02
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.9e-132  Score=1057.42  Aligned_cols=352  Identities=32%  Similarity=0.548  Sum_probs=272.9

Q ss_pred             CCCCchhhHHHHHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhc
Q 005393          260 TKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFK  339 (698)
Q Consensus       260 ~d~~~~~~~~~FQ~hW~kGePVIVr~vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~vkaidCl~~~evei~~~~Ff~  339 (698)
                      .|..+.+|++|||+||++|||||||||++++++++|+|++||++|++.          .+++|||++|++++|++++||+
T Consensus        16 ~d~~~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd~----------~~~lidC~~~~~~~i~v~~Ff~   85 (392)
T 2ypd_A           16 KDYKNSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDH----------QADLLNCKDSIISNANVKEFWD   85 (392)
T ss_dssp             CCTTCTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTTS----------CCCCEETTTCCBCSCCHHHHHH
T ss_pred             cCCCCcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcCc----------eeeeeeCCCCccccCcHHHHhh
Confidence            455556899999999999999999999999999999999999998742          3678999999999999999999


Q ss_pred             cccCCcc---CCCCccceeecCCCCCCCchhhhcccchHHHHhCCCCcccCCCCCccccccccCCCCCCCCCCCcchhhc
Q 005393          340 GYTQGRT---YDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIA  416 (698)
Q Consensus       340 Gy~~gr~---~~~~wp~mLKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLA~~LP~~~lkPDLGPK~YIA  416 (698)
                      ||++++.   ++++||+|||||||||+++|+++||+||+|||++|||||||||+ |+|||||+||+++++||||||||||
T Consensus        86 Gf~~~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiA  164 (392)
T 2ypd_A           86 GFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSA  164 (392)
T ss_dssp             TSSBGGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEE
T ss_pred             hccccccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhh
Confidence            9998753   57999999999999999999999999999999999999999985 9999999999999999999999999


Q ss_pred             cccccccCCCCCcccccccccccchhhhcccccccchhhHHHHHHHHHHHHhhhhhhhhccCCCCccccCCCCCCCCCCC
Q 005393          417 YGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDT  496 (698)
Q Consensus       417 YG~~eelg~gdSvTkLH~DmSDAVNiL~h~~ev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~~~~~e~~~~~~~~~~  496 (698)
                      ||+++++|+|+|||||||||||||||||||+.++... ..... ...+++.+++..+.+                     
T Consensus       165 YG~~~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~-~~~~~-~~l~~~~~~~~d~~~---------------------  221 (392)
T 2ypd_A          165 YGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNG-ILSKA-GILKKFEEEDLDDIL---------------------  221 (392)
T ss_dssp             CCSTTTTCTTCCSEEEEECSSEEEEEEEEEECCBCTT-CCCHH-HHHHHHHTSCCCHHH---------------------
T ss_pred             cCcchhcccCCCcceeeeehhhhhhhhheecccCccc-cchhh-hhhhhhhhccccHHH---------------------
Confidence            9999999999999999999999999999998654222 11111 122222221110000                     


Q ss_pred             ccccccccCCCCCCcccccccccccccCCccccCCCCCCcCCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCc
Q 005393          497 DVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQ  576 (698)
Q Consensus       497 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~  576 (698)
                         +              .++.                +..+.+||+||||||||++|||+||++|++||.    .++.+
T Consensus       222 ---~--------------~r~~----------------~~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~----~~~~~  264 (392)
T 2ypd_A          222 ---R--------------KRLK----------------DSSEIPGALWHIYAGKDVDKIREFLQKISKEQG----LEVLP  264 (392)
T ss_dssp             ---H--------------HHHT----------------CTTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC---------
T ss_pred             ---h--------------hhcc----------------CCCCCCCceeeeeCHhhHHHHHHHHHHHHHhhC----CCccC
Confidence               0              0000                013578999999999999999999999999983    46788


Q ss_pred             cccCccCcceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccccccccccCcccHHHHHHHHHHhhc
Q 005393          577 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRL  656 (698)
Q Consensus       577 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~  656 (698)
                      +.||||||+||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||+
T Consensus       265 ~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~  344 (392)
T 2ypd_A          265 EHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRL  344 (392)
T ss_dssp             -CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC--
T ss_pred             CCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhcccchhhhhheeeeehhhhhc
Q 005393          657 LPKNHRAREDKLEVYLVFIKRKCYVHE  683 (698)
Q Consensus       657 Lp~~H~~keDkLevkkm~l~~~~~~~~  683 (698)
                      || +|++||||||||||+||++..+..
T Consensus       345 l~-~~~~~edkLqvk~m~~~av~~av~  370 (392)
T 2ypd_A          345 LK-EEINYDDKLQVKNILYHAVKEMVR  370 (392)
T ss_dssp             ---------------------------
T ss_pred             cc-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            96 699999999999999998665543
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Back     alignment and structure
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* Back     alignment and structure
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Back     alignment and structure
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha} Back     alignment and structure
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Back     alignment and structure
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Back     alignment and structure
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Back     alignment and structure
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Back     alignment and structure
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Back     alignment and structure
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Back     alignment and structure
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Back     alignment and structure
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A Back     alignment and structure
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Back     alignment and structure
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Back     alignment and structure
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Back     alignment and structure
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Back     alignment and structure
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Back     alignment and structure
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Back     alignment and structure
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Back     alignment and structure
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} Back     alignment and structure
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} Back     alignment and structure
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Back     alignment and structure
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Back     alignment and structure
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Back     alignment and structure
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp} Back     alignment and structure
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Back     alignment and structure
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} Back     alignment and structure
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50} Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 698
d1vrba1319 b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla 2e-04
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 8/52 (15%), Positives = 20/52 (38%)

Query: 594 KKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 645
               +E   +        G  +++P G  H  ++ ++   + + F  P  +D
Sbjct: 188 GDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLD 239

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query698
d1h2ka_335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 98.98
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 98.8
d1vj2a_114 Hypothetical protein TM1459 {Thermotoga maritima [ 94.19
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 93.85
d2b8ma1108 Hypothetical protein MJ0764 {Archaeon Methanococcu 93.16
d2fc7a169 Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu 93.07
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 92.66
d2dipa185 Zinc finger ZZ-type-containing protein 2 {Human (H 91.91
d1rc6a_253 Hypothetical protein YlbA {Escherichia coli [TaxId 91.34
d1o4ta_115 Hypothetical protein TM1287 {Thermotoga maritima [ 90.46
d1lr5a_160 Auxin binding protein {Maize (Zea mays) [TaxId: 45 90.38
d1sefa_250 Hypothetical protein EF2996 {Enterococcus faecalis 88.28
d2bnma2122 Hydroxypropylphosphonic acid epoxidase Fom4, C-ter 87.44
d1sfna_245 Hypothetical protein DR1152 {Deinococcus radiodura 84.2
d1sq4a_273 Glyoxylate-induced protein PA1140 {Pseudomonas aer 81.54
d1x82a_190 Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc 80.98
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9.1e-11  Score=120.51  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=34.6

Q ss_pred             CccceEEEeecCceEEecCCCccccccccc-cccccccc
Q 005393          601 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS-CTKVAVDF  638 (698)
Q Consensus       601 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~S-CIKVAlDF  638 (698)
                      ++.+|.+++.+||++|||+|..|||+||.+ +|.|++.|
T Consensus       243 ~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~  281 (335)
T d1h2ka_         243 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF  281 (335)
T ss_dssp             GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             cCCceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEe
Confidence            457999999999999999999999999965 89999887
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Back     information, alignment and structure
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure