Citrus Sinensis ID: 005425

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------
MSSSERMSSPPPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTRHPRLASQQRSSENGNEYQTGSGLKRKKDPESVDQDGPEKRQSISPQKQDSLSPDHLAPSSVRSGTGSNVEPVIPDKRVLNQEIAEGGDVSNSSVITSVTSEVGSCEDVGNESVAGSSEGNNGSVEGSNNPVSSQSDCCDADSQSLLENRHLDGNGAFQDRVHEELELNAGLGSVLQSTSGIDSETVVQKPVMRLSLTSTA
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccEEEEEEEEEEcccccccccEEEEEEccccccccccHHHHHHHHHHccccccEEEEEccccccEEEEEEcccccEEEEEEccccccccccccccccccccccHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccEEccccccccccccccccHHHHHHHHHHHHccccHHcccccccHHHHHcccHHHHHHHcEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHcccccccccccccccccccccccccEEEEEccccc
ccccccccccccccEcccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEEccEEcccccccccccEEEEccccccccHHHHHHHHHHHHccccHHcccccccccEEEEEEEEccEEEEEEEEEEccccccccccccccHHHHcccHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEEEEEEccccccccccEEEccccHHHHHHHHHHHHHcccccEEEEEEEEHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccHHccccccccccccccccccccccccccEEEEEEcccc
msssermssppppkqygvtkpismagpteadMQRNRELEKFLVEAglyeskeedEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTfgsyrlgvhgpgadidalcvgpsyvsreeDFFFILHNILAEMEEvtelqpvldahvpvmkfkFDGLSIDLLYASISRLVVredldisdmsvlndvdeptvrslngcrvADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQlypnavpsmLVSRFFRVYtmwrwpnpvmlcaideaelgfsvwdprknrrdkthhmpiitpaypcmnssynvstSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERdtygklqchpypheyvdtskpcahcaffmglqrkpgevvqegqqfdirgsVEEFKLSINMYMFWKPGMEICVSHirrkqippyvfpegykrtrhprlasqqrssengneyqtgsglkrkkdpesvdqdgpekrqsispqkqdslspdhlapssvrsgtgsnvepvipdkrvlnqeiaeggdvsnssVITSVTsevgscedvgnesvagssegnngsvegsnnpvssqsdccdadsqsllenrhldgngafqDRVHEELELNAGlgsvlqstsgidsetvvqkpvmrlsltsta
msssermssppppkqygvtkpISMAGPTEADMQRNRELEKFLVEAglyeskeedekreqvLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREdldisdmsvlndvdeptvrslNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKThhmpiitpaypcmnSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRtrhprlasqqrssengneyqtgsglkrkkdpesvdqdgpekrqsispqkqdslspdhlapssvrsgtgsnvepvipdKRVLNQEIaeggdvsnssvITSVTSEVGSCEDVGNESVAgssegnngsvEGSNNPVSSQSDCCDADSQSLLENRHLDGNGAFQDRVHEELELNAGLGSVLqstsgidsetvvqkpvmrlsltsta
msssermssppppKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTRHPRLASQQRSSENGNEYQTGSGLKRKKDPESVDQDGPEKRQSISPQKQDSLSPDHLAPSSVRSGTGSNVEPVIPDKRVLNQEIAEGGDvsnssvitsvtsevgsCEDvgnesvagssegnngsvegsnnpvssqsdccdadsqsLLENRHLDGNGAFQDRVHEELELNAGLGSVLQSTSGIDSETVVQKPVMRLSLTSTA
***********************************************************VLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGY************************************************************************************************************************************************************************************************************
*******************KPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKP*****EGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVF*********************************************************************************************************************************************************************************************************LSLT***
**************QYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYE**********VLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTRH******************************************************************NVEPVIPDKRVLNQEIAEGGDVSNSSVITSVTSEVGSCEDVG*******************************DSQSLLENRHLDGNGAFQDRVHEELELNAGLGSVLQSTSGIDSETVVQKPVMRLSLTSTA
**************QYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEG******************************************************************************************************************************************************LENR**DGNGAFQDRVHEELELNAGLGSVLQSTSGIDSETVVQKPVMRLSLTS**
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MSSSERMSSPPPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTRHPRLASQQRSSENGNEYQTGSGLKRKKDPESVDQDGPEKRQSISPQKQDSLSPDHLAPSSVRSGTGSNVEPVIPDKRVLNQEIAEGGDVSNSSVITSVTSEVGSCEDVGNESVAGSSEGNNGSVEGSNNPVSSQSDCCDADSQSLLENRHLDGNGAFQDRVHEELELNAGLGSVLQSTSGIDSETVVQKPVMRLSLTSTA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query697 2.2.26 [Sep-21-2011]
Q54J73809 Poly(A) polymerase OS=Dic yes no 0.700 0.603 0.456 1e-129
Q9BWT3736 Poly(A) polymerase gamma yes no 0.725 0.687 0.419 1e-115
Q61183739 Poly(A) polymerase alpha yes no 0.688 0.649 0.438 1e-114
P51003745 Poly(A) polymerase alpha no no 0.672 0.629 0.448 1e-114
P25500739 Poly(A) polymerase alpha no no 0.672 0.634 0.448 1e-114
Q6PCL9739 Poly(A) polymerase gamma no no 0.721 0.680 0.421 1e-114
Q9WVP6641 Poly(A) polymerase beta O no no 0.674 0.733 0.445 1e-112
Q9NRJ5636 Poly(A) polymerase beta O no no 0.670 0.734 0.447 1e-111
P51004715 Poly(A) polymerase alpha- N/A no 0.684 0.667 0.427 1e-110
Q10295566 Poly(A) polymerase pla1 O yes no 0.558 0.687 0.466 1e-103
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 Back     alignment and function desciption
 Score =  461 bits (1187), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/506 (45%), Positives = 318/506 (62%), Gaps = 18/506 (3%)

Query: 13  PKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWV 72
           P   GVT+PIS A P+  D + + ELE  L+   L+ES EE  KRE++LG++ QI ++W 
Sbjct: 50  PTILGVTEPISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWA 109

Query: 73  KELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHN 132
           K+++  +GY +Q   +  A IFTFGSYRLGVHGPG+DID LCVGP ++ R  DFF  L +
Sbjct: 110 KQVSLKKGYPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMRS-DFFDDLSD 168

Query: 133 ILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDL-DISDMSVLNDVD 191
           IL    E+TE   V DA VPV+   F G+ IDL+YA ++   + E+L D+ D S L ++D
Sbjct: 169 ILKVHPEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNID 228

Query: 192 EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVA 251
           E ++ SLNGCRV DQILKLVPN+ +F   LRC+K WA RRG+YSN+ GFLGGV+WALL A
Sbjct: 229 EKSILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTA 288

Query: 252 RVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAE-LGFSVWDPRKNRRDKTHHM 310
           R+CQLYPN+ PS ++ RFF+VY +W+WP P++LC I E   LG  VW+P   +RDK H M
Sbjct: 289 RICQLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNP---KRDKAHLM 345

Query: 311 PIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRN 370
           PIITPAYP MNS+YNVS STL++M  +F  G  I  ++E  +  W  L E   FF  Y  
Sbjct: 346 PIITPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSF 405

Query: 371 YLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVD----TSKPC 426
           Y+++D  + N +D   W+GW+ES+LR L   +E     K    PYP  + +     + P 
Sbjct: 406 YIEIDCYSMNEEDSRKWEGWIESKLRFLISNLESTPKMKFAV-PYPKGFTNNLHKANNPD 464

Query: 427 AHC-AFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPG---MEICVSHIRRK 482
             C +FFMGL           +  D+  +V EF   I  ++  +P    M+I V +I++K
Sbjct: 465 QICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKK 524

Query: 483 QIPPYVFPEGYKRTRHPRLASQQRSS 508
           Q+P +V  EG      P   +++RSS
Sbjct: 525 QLPAFVKDEG---PEEPVKTTKKRSS 547
Polymerase that creates the 3'-poly(A) tail of mRNA's. May acquire specificity through interaction with a cleavage and polyadenylation factor.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 Back     alignment and function description
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4 Back     alignment and function description
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4 Back     alignment and function description
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3 Back     alignment and function description
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1 Back     alignment and function description
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2 Back     alignment and function description
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 Back     alignment and function description
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a PE=2 SV=1 Back     alignment and function description
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pla1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query697
297743180677 unnamed protein product [Vitis vinifera] 0.967 0.995 0.742 0.0
225442450770 PREDICTED: poly(A) polymerase-like [Viti 0.988 0.894 0.692 0.0
449480779758 PREDICTED: poly(A) polymerase-like [Cucu 0.978 0.899 0.672 0.0
255549812712 nucleic acid binding protein, putative [ 0.934 0.914 0.710 0.0
147790301778 hypothetical protein VITISV_011285 [Viti 0.959 0.859 0.687 0.0
449448062772 PREDICTED: LOW QUALITY PROTEIN: poly(A) 0.978 0.883 0.654 0.0
356522230766 PREDICTED: poly(A) polymerase-like [Glyc 0.949 0.864 0.674 0.0
356528904790 PREDICTED: poly(A) polymerase-like [Glyc 0.967 0.853 0.664 0.0
356515639732 PREDICTED: poly(A) polymerase-like [Glyc 0.780 0.743 0.749 0.0
255550972754 Poly(A) polymerase beta, putative [Ricin 0.968 0.895 0.640 0.0
>gi|297743180|emb|CBI36047.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1044 bits (2700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/700 (74%), Positives = 579/700 (82%), Gaps = 26/700 (3%)

Query: 1   MSSSERMSSPPP---PKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKR 57
           M SS+ +   PP    KQYGVTKPIS+AGPTE D+QR+ ELEKFLV+AGLYESKEE  KR
Sbjct: 1   MVSSKGLGDSPPRQSVKQYGVTKPISVAGPTEVDIQRSLELEKFLVDAGLYESKEEAIKR 60

Query: 58  EQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGP 117
            +VL R+ QI KDWVK+LTRLRGY+DQMVEDANA++FTFGSYRLGVHGPG DID LC+GP
Sbjct: 61  AEVLDRLGQIVKDWVKQLTRLRGYTDQMVEDANAVLFTFGSYRLGVHGPGTDIDTLCIGP 120

Query: 118 SYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVRE 177
           SYVSREEDFFFILHNILA+MEEVTELQPV DAHVPVMKFKFDG+SIDLLYASIS LVV E
Sbjct: 121 SYVSREEDFFFILHNILADMEEVTELQPVPDAHVPVMKFKFDGISIDLLYASISLLVVPE 180

Query: 178 DLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237
           DLDISD+SVL ++DEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV
Sbjct: 181 DLDISDLSVLYNIDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 240

Query: 238 TGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVW 297
           TGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYT WRWPNPVMLCAI+E ELGFSVW
Sbjct: 241 TGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFSVW 300

Query: 298 DPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSA 357
           DPRKN RD+THHMPIITPAYPCMNSSYNVS STLRVMM+QFQYGN ICE +EL+ AQW A
Sbjct: 301 DPRKNPRDRTHHMPIITPAYPCMNSSYNVSISTLRVMMEQFQYGNKICEGIELSNAQWGA 360

Query: 358 LFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPH 417
           LFEPYLFFESY+NYLQVDIVA + DDL AWKGWVESRLRQLTLMIERDT+GKLQCHPYPH
Sbjct: 361 LFEPYLFFESYKNYLQVDIVAVDIDDLRAWKGWVESRLRQLTLMIERDTFGKLQCHPYPH 420

Query: 418 EYVDTSKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVS 477
           EYVDTSK C+HCAFFMGLQRK GE++QEGQQFDIRG+V+EF+ SINMYMFWKPGMEI VS
Sbjct: 421 EYVDTSKQCSHCAFFMGLQRKQGEIIQEGQQFDIRGTVDEFRHSINMYMFWKPGMEIYVS 480

Query: 478 HIRRKQIPPYVFPEGYKRTRHPRLASQQRSSENGNEYQTGSGLKRKKDPESVDQDGPEKR 537
           H+RRKQIP YVFPEGYKR+R  R  +QQ+  E                          KR
Sbjct: 481 HVRRKQIPSYVFPEGYKRSRPQRPVNQQQGDE-----------------------ASAKR 517

Query: 538 QSISPQKQDSLSPDHLAPSSVRSGTGSNVEPVIPDKRVLNQEIAEGGDVSNSSVITSVTS 597
            +ISPQ+QDS+SP+ ++   +++    N+EP   DK +     AE G VSNSSV+TS+TS
Sbjct: 518 LTISPQRQDSVSPEIISHRWMKADEKGNIEPDKSDKPIPCTGNAEAGSVSNSSVVTSITS 577

Query: 598 EVGSCEDVGNESVAGSSEGNNGSVEGSNNPVSSQSDCCDADSQSLLENRHLDGNGAFQDR 657
           EV S  DVG ESV GSS+GN GSVEGSN    SQ D C+ADS+ LLEN  ++    FQD 
Sbjct: 578 EVSSSGDVGFESVGGSSDGNTGSVEGSNILGISQGDSCEADSELLLENGCVNAKEGFQDG 637

Query: 658 VHEELELNAGLGSVLQSTSGIDSETVVQKPVMRLSLTSTA 697
           +HEELE NA LG VL+S  G+DSE V +  + RLSLTSTA
Sbjct: 638 LHEELEPNAALGIVLKSRGGVDSEPVPKSVLSRLSLTSTA 677

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225442450|ref|XP_002277939.1| PREDICTED: poly(A) polymerase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449480779|ref|XP_004155993.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255549812|ref|XP_002515957.1| nucleic acid binding protein, putative [Ricinus communis] gi|223544862|gb|EEF46377.1| nucleic acid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147790301|emb|CAN69980.1| hypothetical protein VITISV_011285 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448062|ref|XP_004141785.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) polymerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356522230|ref|XP_003529750.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|356528904|ref|XP_003533037.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|356515639|ref|XP_003526506.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|255550972|ref|XP_002516534.1| Poly(A) polymerase beta, putative [Ricinus communis] gi|223544354|gb|EEF45875.1| Poly(A) polymerase beta, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query697
TAIR|locus:2134113765 nPAP "nuclear poly(a) polymera 0.803 0.732 0.708 6.9e-221
TAIR|locus:2043560800 PAPS2 "poly(A) polymerase 2" [ 0.781 0.681 0.713 3.3e-219
TAIR|locus:2030943713 PAPS1 "poly(A) polymerase 1" [ 0.711 0.695 0.634 1.2e-177
DICTYBASE|DDB_G0288259809 papA "poly(A) polymerase" [Dic 0.724 0.624 0.446 2.9e-118
ZFIN|ZDB-GENE-040426-1256744 papolg "poly(A) polymerase gam 0.708 0.663 0.436 4.4e-109
UNIPROTKB|G3MYA2718 PAPOLA "Poly(A) polymerase alp 0.800 0.777 0.398 1.7e-107
UNIPROTKB|P25500739 PAPOLA "Poly(A) polymerase alp 0.800 0.755 0.398 1.7e-107
UNIPROTKB|Q3T0A2693 PAPOLA "Poly(A) polymerase alp 0.800 0.805 0.398 1.7e-107
UNIPROTKB|F1SAQ7693 PAPOLA "Uncharacterized protei 0.800 0.805 0.398 2.7e-107
UNIPROTKB|I3L6F0734 PAPOLA "Uncharacterized protei 0.800 0.760 0.398 2.7e-107
TAIR|locus:2134113 nPAP "nuclear poly(a) polymerase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2133 (755.9 bits), Expect = 6.9e-221, P = 6.9e-221
 Identities = 408/576 (70%), Positives = 476/576 (82%)

Query:    14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVK 73
             K YG+TKP+S+AGP+ AD++RN ELEK+LV+ GLYESK++  +RE+VLGRI QI K WVK
Sbjct:    19 KSYGITKPLSLAGPSSADIKRNVELEKYLVDEGLYESKDDTMRREEVLGRIDQIVKHWVK 78

Query:    74 ELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNI 133
             +LT+ RGY+DQMVEDANA+IFTFGSYRLGVHGPGADID LCVGPSYV+REEDFF ILH+I
Sbjct:    79 QLTQQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHDI 138

Query:   134 LAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEP 193
             LAEMEEVTEL PV DAHVPVMKFKF G+ IDLLYASIS LVV +DLDIS  SVL +VDEP
Sbjct:   139 LAEMEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEP 198

Query:   194 TVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARV 253
             TVRSLNGCRVADQILKLVPN EHF TTLRCLK+WAK+RGVYSNVTGFLGGVNWALLVARV
Sbjct:   199 TVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARV 258

Query:   254 CQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPII 313
             CQLYPNA+PSMLVSRFFRVYT WRWPNPVMLCAI+E ELGF VWD RKN RD+ H MPII
Sbjct:   259 CQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPII 318

Query:   314 TPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQ 373
             TPAYPCMNSSYNVS STLRVM +QFQ+GN I +E+ELNK  WS+LFE Y+FFE+Y+NYLQ
Sbjct:   319 TPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQ 378

Query:   374 VDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAHCAFFM 433
             VDIVAA+A+DLLAWKGWVESR RQLTL IERDT G L CHP P+EYVDT++   HCAFFM
Sbjct:   379 VDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFM 438

Query:   434 GLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGY 493
             GLQR  G   QE QQFDIRG+V+EF+  +NMYMFWKPGM++ VSH+RR+Q+PP+VFP GY
Sbjct:   439 GLQRAEGVGGQECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGY 498

Query:   494 KR---TRHPRLASQQRSSENGNEYQTGSGL----KRKKDPESVD--QDGPEKRQSISPQK 544
             +R   +RH  L    +S E+G+   +GS +    KRK D E +D   + PEKR S+SPQ 
Sbjct:   499 RRPRQSRHQNLPGG-KSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSPQS 557

Query:   545 QDSLSPDHLAPSSVRSGTGSNVEPVIPDKRVLNQEI 580
              D +SP++   S++ +G      PV   +R  ++EI
Sbjct:   558 LDIVSPEN---SAITTGW---TPPVCNLRRPPSEEI 587
GO:0003723 "RNA binding" evidence=IEA
GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS
GO:0031123 "RNA 3'-end processing" evidence=IEA
GO:0043631 "RNA polyadenylation" evidence=IEA;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
TAIR|locus:2043560 PAPS2 "poly(A) polymerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030943 PAPS1 "poly(A) polymerase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288259 papA "poly(A) polymerase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1256 papolg "poly(A) polymerase gamma" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G3MYA2 PAPOLA "Poly(A) polymerase alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P25500 PAPOLA "Poly(A) polymerase alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0A2 PAPOLA "Poly(A) polymerase alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SAQ7 PAPOLA "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3L6F0 PAPOLA "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.691
4th Layer2.7.7.19LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034292001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (742 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037665001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (740 aa)
    ••• 0.503
GSVIVG00038486001
SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (1448 aa)
    ••• 0.478

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
pfam04928349 pfam04928, PAP_central, Poly(A) polymerase central 0.0
PTZ00418593 PTZ00418, PTZ00418, Poly(A) polymerase; Provisiona 0.0
COG5186552 COG5186, PAP1, Poly(A) polymerase [RNA processing 1e-150
pfam04926141 pfam04926, PAP_RNA-bind, Poly(A) polymerase predic 5e-48
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 2e-27
pfam0190992 pfam01909, NTP_transf_2, Nucleotidyltransferase do 3e-08
cd0539749 cd05397, NT_Pol-beta-like, Nucleotidyltransferase 0.002
>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain Back     alignment and domain information 
 Score =  583 bits (1504), Expect = 0.0
 Identities = 207/350 (59%), Positives = 265/350 (75%), Gaps = 1/350 (0%)

Query: 13  PKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWV 72
            KQYGVTKPIS AGPT AD++    L +FL E GL+ES+EE +KRE+VL ++ ++ K+WV
Sbjct: 1   TKQYGVTKPISTAGPTPADLELTDSLIEFLKEEGLFESEEESKKREEVLEKLNKLVKEWV 60

Query: 73  KELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHN 132
           K+++  +G  ++  E A   IFTFGSYRLGVHGPG+DID LCV P +V+RE DFF   + 
Sbjct: 61  KKVSEQKGMPERAAEAAGGKIFTFGSYRLGVHGPGSDIDTLCVAPKHVTRE-DFFSSFYE 119

Query: 133 ILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDE 192
           IL    EVTEL PV DA VP++KFKFDG+ IDLL+AS++   V +DLD+ D S+L ++DE
Sbjct: 120 ILKLRPEVTELVPVEDAFVPIIKFKFDGIEIDLLFASLALPRVPDDLDLLDDSLLRNLDE 179

Query: 193 PTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVAR 252
            +VRSLNGCRV D+IL+LVPN + F T LR +K WAKRRG+YSNV GFLGGV WA+LVAR
Sbjct: 180 KSVRSLNGCRVTDEILRLVPNKDVFRTALRAIKLWAKRRGIYSNVLGFLGGVAWAILVAR 239

Query: 253 VCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPI 312
           VCQLYPNA PS LV +FFR+++ W+WPNPV+L  I+E  L F VWDPR    D+ H MPI
Sbjct: 240 VCQLYPNASPSTLVRKFFRIFSQWQWPNPVLLKPIEEGPLNFRVWDPRLYPSDRYHLMPI 299

Query: 313 ITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPY 362
           ITPAYP MNS++NV+ STL+V+ ++F+ G  I  E+ L KA WS LFEP+
Sbjct: 300 ITPAYPSMNSTHNVTRSTLKVITEEFKRGLEITSEILLGKAPWSDLFEPH 349

The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta- sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different. Length = 349
>gnl|CDD|240410 PTZ00418, PTZ00418, Poly(A) polymerase; Provisional Back     alignment and domain information
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|218331 pfam04926, PAP_RNA-bind, Poly(A) polymerase predicted RNA binding domain Back     alignment and domain information
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>gnl|CDD|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain Back     alignment and domain information
>gnl|CDD|143387 cd05397, NT_Pol-beta-like, Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 697
KOG2245562 consensus Poly(A) polymerase and related nucleotid 100.0
PTZ00418593 Poly(A) polymerase; Provisional 100.0
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 100.0
PF04928254 PAP_central: Poly(A) polymerase central domain; In 100.0
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 99.98
PF04926157 PAP_RNA-bind: Poly(A) polymerase predicted RNA bin 99.97
KOG1906514 consensus DNA polymerase sigma [Replication, recom 99.96
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.8
KOG2277596 consensus S-M checkpoint control protein CID1 and 99.75
TIGR03671408 cca_archaeal CCA-adding enzyme. 99.62
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 99.59
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.22
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 99.17
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 98.3
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 98.25
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 97.81
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 97.61
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 97.55
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 97.4
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 97.38
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 97.34
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 96.96
PF14091152 DUF4269: Domain of unknown function (DUF4269) 96.06
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 95.49
COG166997 Predicted nucleotidyltransferases [General functio 95.32
COG1708128 Predicted nucleotidyltransferases [General functio 94.56
PRK13746262 aminoglycoside resistance protein; Provisional 94.29
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 94.11
cd00141307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 92.87
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 91.56
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 90.83
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 88.64
KOG20541121 consensus Nucleolar RNA-associated protein (NRAP) 88.1
cd05401172 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) doma 87.59
COG1665315 Predicted nucleotidyltransferase [General function 84.3
PF03445138 DUF294: Putative nucleotidyltransferase DUF294; In 82.36
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=3e-142  Score=1150.58  Aligned_cols=491  Identities=54%  Similarity=0.942  Sum_probs=465.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCcCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 005425            1 MSSSERMSSPPPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRG   80 (697)
Q Consensus         1 ~~~~~~~~s~~~~~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g   80 (697)
                      |.+.. +......+.||||+|||+++||++|+++|.+|+++|+++|+||++||..+|++||++|++||++|++++++++|
T Consensus         1 m~~~~-~~~~~~~~~~Gvt~PiS~a~p~~~d~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~   79 (562)
T KOG2245|consen    1 MVSVQ-NPMSPSTKSYGVTQPISTAGPTEADIALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKG   79 (562)
T ss_pred             CCCcc-cCcCCccccccccCCcccCCCcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44444 33333479999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCeEEEEeeeccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecC
Q 005425           81 YSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDG  160 (697)
Q Consensus        81 ~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~G  160 (697)
                      +++++..+++++|+||||||||||+||||||+|||+|+|++|+ |||..|.++|+++++|++|++|++|+||||||+|+|
T Consensus        80 ~p~~~~~~aggkIftfGSYRLGVhg~GADIDtLcV~Prhv~R~-DFF~sf~~mL~~~~eVteL~~V~dAfVPiikfKf~G  158 (562)
T KOG2245|consen   80 LPDGMIENAGGKIFTFGSYRLGVHGPGADIDTLCVGPRHVSRS-DFFTSFYDMLKERPEVTELHAVEDAFVPIIKFKFDG  158 (562)
T ss_pred             CChhhhhhcCceEEeccceeecccCCCCCcceeeeccccccHH-HHHHHHHHHHhcCccccccccccccccceEEEEecC
Confidence            9999999999999999999999999999999999999999996 999999999999999999999999999999999999


Q ss_pred             eeeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCccCc
Q 005425          161 LSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF  240 (697)
Q Consensus       161 I~iDLsfa~l~~~~ip~~l~l~~d~~L~~lDe~s~rSLNG~Rvtd~Il~lVP~~~~FR~llr~IK~WAK~RGIysn~~G~  240 (697)
                      |+|||+||+++.+.+|++|||.||++|+||||+|+||||||||||+||+|||+.+.||.+|||||+|||+||||+|.+||
T Consensus       159 I~IDllfArL~l~~VP~dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAKrrgVYsN~~GF  238 (562)
T KOG2245|consen  159 IEIDLLFARLALPVVPEDLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAKRRGVYSNVMGF  238 (562)
T ss_pred             eeeeeeehhcccccCCCcccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCCCC
Q 005425          241 LGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCM  320 (697)
Q Consensus       241 LGG~swaLLVa~vcQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~  320 (697)
                      |||++|||||||+|||||||+++.||.+||.+|++|+||+||+|++++++.|++++|||+.|++||+|+||||||+||+|
T Consensus       239 ~GGV~wA~LVARiCQLYPNA~~s~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L~~~VWdPr~n~~DryHlMPIITPAyP~~  318 (562)
T KOG2245|consen  239 LGGVAWAMLVARICQLYPNASPSTLVAKFFRVFSQWNWPNPVLLKPIEEGNLNLPVWDPRVNPSDRYHLMPIITPAYPQM  318 (562)
T ss_pred             cchHHHHHHHHHHHccCCCcchHHHHHHHHHHHhhccCCCceEeccccccccCccccCCCCCCCCcceecccccCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCccCHhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccchhhhcccEEEEEEEeCChhhhhhhhhhhHhhHHHHHH
Q 005425          321 NSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTL  400 (697)
Q Consensus       321 Nsa~nVs~stlrvI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p~~Ff~~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~  400 (697)
                      |++||||+||+++|.+||+||.+||++|+.++.+|++|||+++||.+|||||+|+++|.++|++.+|.||||||+|+|+.
T Consensus       319 nsthNVS~ST~~Vi~~Ef~~g~~I~~~i~~~k~~W~~LFE~~~FF~rYk~yl~i~~~A~~~ed~l~w~G~vESriR~Lv~  398 (562)
T KOG2245|consen  319 NSTHNVSRSTLKVITEEFKRGLEICDDIELNKLDWSDLFELYNFFSRYKHYLQITASAATEEDLLKWVGWVESRIRQLVL  398 (562)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhHHHHHHhhHheeeeeccChHHHhhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCceeeccCCCCCCCCCCC----CceeEEEEeeeeCCCCccCCCceecchHHHHHHHHHHh----hccccCCc-
Q 005425          401 MIERDTYGKLQCHPYPHEYVDTSKP----CAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSIN----MYMFWKPG-  471 (697)
Q Consensus       401 ~LE~~~~~~l~ahp~P~~f~~~~~~----~~~~~ffIGL~~~~~~~~~~~~~~dl~~~v~eF~~~i~----~~~~~~~~-  471 (697)
                      +||+.. +++.|||+|+.|.++...    .+...|||||.+.++      .++||+..+++|...++    ..+.+.+| 
T Consensus       399 klE~~~-~i~~ahp~P~~f~~~~~~~~~~~~~~~~~igl~~~e~------~~~Dlt~~iq~f~~~v~~q~~~~~~~~~g~  471 (562)
T KOG2245|consen  399 KLERNQ-VILIAHPNPKKFKDTYNCPLEEDPESLWFIGLEFDEN------VKIDLTKDIQSFKKNVERQAVNLTLIKAGC  471 (562)
T ss_pred             HHHhhc-ceEEecCCcccccccccCCcccchhHhhhhccccccc------ccchhhhhHHHhhhhhhhcceeeeeeeccc
Confidence            999954 678899999999876532    346689999987754      34999999999999887    55677899 


Q ss_pred             -eEEEEEeeccCCCCCCcCCCCccccCCCc
Q 005425          472 -MEICVSHIRRKQIPPYVFPEGYKRTRHPR  500 (697)
Q Consensus       472 -m~i~v~~vkr~~LP~~v~~~g~~~~~~~~  500 (697)
                       |.+.+.|+||++|+.+++++++++.|.-+
T Consensus       472 ~~~~~~~~~krr~l~~~~~~~~l~~~k~~~  501 (562)
T KOG2245|consen  472 DVEIDFGHVKRRSLIQTITKEFLRLCKQYK  501 (562)
T ss_pred             ccccccccccccccccccCHHHhhHHHhhc
Confidence             77778899999999999999887765543

>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04926 PAP_RNA-bind: Poly(A) polymerase predicted RNA binding domain; InterPro: IPR007010 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins Back     alignment and domain information
>COG1665 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
1q79_A514 Crystal Structure Of Mammalian Poly(A) Polymerase L 1e-113
1q78_A514 Crystal Structure Of Poly(A) Polymerase In Complex 1e-112
1f5a_A513 Crystal Structure Of Mammalian Poly(A) Polymerase L 1e-106
2hhp_A530 Structure Of Yeast Poly(A) Polymerase In A Closed C 1e-98
2o1p_A546 Structure Of Yeast Poly(A) Polymerase In A Somewhat 1e-98
1fa0_A537 Structure Of Yeast Poly(A) Polymerase Bound To Mang 1e-98
2q66_A525 Structure Of Yeast Poly(A) Polymerase With Atp And 9e-98
3nyb_A323 Structure And Function Of The Polymerase Core Of Tr 7e-05
>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 514 Back     alignment and structure 
Iteration: 1

 Score =  404 bits (1039), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/481 (44%), Positives = 304/481 (63%), Gaps = 15/481 (3%)
Query: 14  KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVK 73
           K YG+T PIS+A P E D    ++L + L   G++E +EE ++R  +LG++  + K+W++
Sbjct: 18  KHYGITSPISLAAPKETDXLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIR 77
Query: 74  ELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNI 133
           E++  +     ++E+    IFTFGSYRLGVH  GADIDALCV P +V R  DFF   ++ 
Sbjct: 78  EISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDK 136
Query: 134 LAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEP 193
           L   EEV +L+ V +A VPV+K  FDG+ ID+L+A ++   + EDLD+ D S+L ++D  
Sbjct: 137 LKLQEEVKDLRAVEEAFVPVIKLXFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 196
Query: 194 TVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARV 253
            +RSLNGCRV D+IL LVPN+++F  TLR +K WAKR  +YSN+ GFLGGV+WA+LVAR 
Sbjct: 197 XIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 256
Query: 254 CQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPII 313
           CQLYPNA+ S LV +FF V++ W WPNPV+L   +E  L   VWDPR N  D+ H MPII
Sbjct: 257 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 316
Query: 314 TPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQ 373
           TPAYP  NS+YNVS ST  VM+++F+ G  I +E+ L+KA+WS LFE   FF+ Y++Y+ 
Sbjct: 317 TPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIV 376
Query: 374 VDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTSKPCAH 428
           +   A      L W G VES++R L   +E++ +  L     Q  P P E  D  K    
Sbjct: 377 LLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPD--KEEFR 434
Query: 429 CAFFMGLQRKPGEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSHIRRKQ 483
             + +GL  K  E   E    D+   ++ F     + +IN  MF +  M+I   H++RKQ
Sbjct: 435 TMWVIGLVFKKTE-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIAAMHVKRKQ 492
Query: 484 I 484
           +
Sbjct: 493 L 493
>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With 3'- Datp And Magnesium Chloride Length = 514 Back     alignment and structure
>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 513 Back     alignment and structure
>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed Conformation Length = 530 Back     alignment and structure
>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed State Length = 546 Back     alignment and structure
>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate And 3'-Datp Length = 537 Back     alignment and structure
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And Oligo(A) Length = 525 Back     alignment and structure
>pdb|3NYB|A Chain A, Structure And Function Of The Polymerase Core Of Tramp, A Rna Surveillance Complex Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 0.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 1e-180
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 8e-14
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 1e-11
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 2e-11
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 4e-08
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 1e-07
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 8e-07
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query697
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 100.0
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.32
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.1
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 98.05
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 97.3
1no5_A114 Hypothetical protein HI0073; structural genomics, 97.22
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 97.0
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 96.89
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 96.7
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 94.73
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 94.26
2fmp_A335 DNA polymerase beta; nucleotidyl transferase, tran 93.6
2bcq_A335 DNA polymerase lambda; misalignment, extrahelical, 92.05
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 91.25
1jaj_A174 DNA polymerase beta-like protein; CIS peptide, vir 88.09
2ihm_A360 POL MU, DNA polymerase MU; helix-turn-helix, trans 87.35
1jms_A381 Terminal deoxynucleotidyltransferase; polymerase; 83.17
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A* Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 697
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 1e-86
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 3e-85
d2q66a1150 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, mid 3e-84
d1q79a1150 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, mid 1e-82
d1q79a3134 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-t 5e-45
d2q66a3178 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-t 3e-39
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 4e-20
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  268 bits (686), Expect = 1e-86
 Identities = 89/197 (45%), Positives = 131/197 (66%), Gaps = 1/197 (0%)

Query: 15  QYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKE 74
            YG+T PIS+A P E D    ++L + L   G++E +EE ++R  +LG++  + K+W++E
Sbjct: 1   HYGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIRE 60

Query: 75  LTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNIL 134
           ++  +     ++E+    IFTFGSYRLGVH  GADIDALCV P +V R  DFF   ++ L
Sbjct: 61  ISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDR-SDFFTSFYDKL 119

Query: 135 AEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPT 194
              EEV +L+ V +A VPV+K  FDG+ ID+L+A ++   + EDLD+ D S+L ++D   
Sbjct: 120 KLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRC 179

Query: 195 VRSLNGCRVADQILKLV 211
           +RSLNGCRV D+IL LV
Sbjct: 180 IRSLNGCRVTDEILHLV 196
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Length = 150 Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 134 Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 178 Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query697
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 100.0
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 100.0
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 100.0
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 100.0
d2q66a3178 Poly(A) polymerase, PAP, C-terminal domain {Baker' 99.97
d1q79a3134 Poly(A) polymerase, PAP, C-terminal domain {Cow (B 99.96
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.9
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.37
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.08
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 97.69
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 97.53
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 97.34
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 96.61
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 95.96
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 95.81
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 95.5
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 94.49
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 94.13
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 92.98
d2pbea2135 Aminoglycoside 6-adenylyltransferase AadK {Bacillu 81.89
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-52  Score=414.82  Aligned_cols=197  Identities=45%  Similarity=0.749  Sum_probs=193.5

Q ss_pred             CCCCCCCCCcCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEE
Q 005425           14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALI   93 (697)
Q Consensus        14 ~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I   93 (697)
                      |+||+|+|||+++||++|++++++|+++|+++++|||+||.++|++|+++|++++++|++++++++|+++..+..++++|
T Consensus         1 ~~~Gvt~Pis~~~Pt~~d~~~s~~L~~~L~~~~~~~s~ee~~~R~~vl~~l~~iv~~~v~~~~~~~~~~~~~~~~~~~~v   80 (197)
T d2q66a2           1 KVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKI   80 (197)
T ss_dssp             CCCSSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEE
T ss_pred             CcCcCCCCcccCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCCcEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCeeeeEEeeecccc
Q 005425           94 FTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRL  173 (697)
Q Consensus        94 ~~FGSy~lGv~~p~SDID~l~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~  173 (697)
                      +|||||++|+|+|+||||+||++|.+++++ +||..|+++|++.+.++++++|++|+||||||+++||+|||+||+++.+
T Consensus        81 ~~fGS~~lg~~~p~SDID~~~~~p~~~~~~-~ff~~l~~~L~~~~~v~~i~~I~~A~VPIIK~~~~gi~iDlsfa~l~~~  159 (197)
T d2q66a2          81 FTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIALICARLDQP  159 (197)
T ss_dssp             EEEHHHHHTCCCTTCCEEEEEEECTTCCHH-HHHHHHHHHHHTCTTEEEEEEECSSSSCEEEEEETTEEEEEEEEECSSS
T ss_pred             EecccccccccCCCCCcceEEecCCcCCHH-HHHHHHHHHHHhCCCCceeEEeecccccEEEEEEcCEEEEeecccccCC
Confidence            999999999999999999999999999985 9999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccCCCCcccccccchhhHHHHHHHhC
Q 005425          174 VVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLV  211 (697)
Q Consensus       174 ~ip~~l~l~~d~~L~~lDe~s~rSLNG~Rvtd~Il~lV  211 (697)
                      .+|+++++.|+++|++||++++|||||||||++|+++|
T Consensus       160 ~~p~~l~~~~~~lL~~ld~~~~rSlNG~Rv~d~il~lV  197 (197)
T d2q66a2         160 QVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELV  197 (197)
T ss_dssp             CBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCcccccCHHHHhCCCcccccccccHHHHHHHHhhC
Confidence            99999999999999999999999999999999999986
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure