Citrus Sinensis ID: 005428

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------
MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQELQNSKPHNQTSPPTKNRGRRRGRGGRKSDQNDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNGRSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFNSSVELNTILCY
cccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccEEEcccEEEccccccccccEEEEEEEEccccccccccccEEEEEEEEEEEEcHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEccEEEEEEccccEEEEEEEcccEEEEccccHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEEcccccccEEEEcccccccccccEEcccccccEEEHHHHHHHHHccccccccccEEEEcccccccccccccEEccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHcccEEcccccEEEcccccccEEEEccccccccccccccEEEcccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccEEEccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccEEEccccccc
ccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHcHHHcccccccccccccEEccccccccccEEEEEEEEcccccccccccEEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccEcccccccccccccccccEEEEccccccccccccccEEEEEccHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEEEccccccccccEccccccccEEEHHHHHHHHcccEEEcccccccEcccccccccccHHHHEccccHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHcccEEccccEEEEEEEcccccEEEcccccccEccccccEEEccccEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccccEEEcEEEccccEEEEEEEcccccccccccHHHHHHEEEEEEEEEccccEEEEEccccccc
mpirqmkdsseQHLVIKTHLQntmnqsqkqpktaqngkgpphqelqnskphnqtspptknrgrrrgrggrksdqndvfmrpssrpctvahkpvnqvcdlvgsnangavgngrslcatemgfptsskslsfaprpgygqvgtKCIVKANHffaelpdkdlnqydvtitpevasRTVNRAIMAELVRLYKEsdlgmrlpaydgrkslytagelpfVWKEFKIKLVDeldgingpkrvREYKVVIKFAARANMHHLGQFlagkradapQEALQILDIVLRELstkrycpigrsffspsirtpqrlgdgLESWCGFYqsirptqmglsLNIDMasaafieplPVIEFVAQLLGKDvlsrtlsdsdRVKIKKALRGVKvevthrgtvrrkyrvsgltsqptrelvfpvddnstMKSVVEYFQEMYGFTiqhthlpclqvgnqkkanylpmeackivegqRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEArilpapwlkyhengkekdclpqvgqwnMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQvsgmefnpepvipihnarpDQVEKALKHVYhssmsktkgKELELLLAIlpdnngslygdLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFnssvelntilcy
mpirqmkdsseqHLVIKTHLQNTMNQSQKQPKTAQNGKGPphqelqnskphnqtspptknrgrrrgrggrksdqndvfmrpssrpctvahKPVNQVCDLVGSNANGAVGNGRSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFaelpdkdlnqYDVTItpevasrtvnrAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVdeldgingpkrvREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRycpigrsffspsirtpqRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVlsrtlsdsdrvkikkalrgvkvevthrgtvrrkyrvsgltsqptrelvfpvddnSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLkvtcqrprdreNDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPApwlkyhengkEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKVCLsfnssvelntilcy
MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQELQNSKPHNQTSPPTKNrgrrrgrggrKSDQNDVFMRPSSRPCTVAHKPVNQVCDLvgsnangavgngRSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFNSSVELNTILCY
**************************************************************************************TVAHKPVNQVCDLVGSNANGAVGNGRSLCATEM**********FAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHN*********LKHVY*********KELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFNSSVELNTILC*
*******************************************************************************************************************************************GTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLV*************EYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRY***************TCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFNSSVELNTILCY
***********QHLVIKTHLQN****************************************************NDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNGRSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFNSSVELNTILCY
***********QHLV**THLQ**********************************************************************************************************LSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFNSSVELNT****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQELQNSKPHNQTSPPTKNRGRRRGRGGRKSDQNDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNGRSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFNSSVELNTILCY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query697 2.2.26 [Sep-21-2011]
Q9XGW1 988 Protein argonaute 10 OS=A yes no 0.979 0.691 0.781 0.0
Q69VD5 979 Protein argonaute PNH1 OS yes no 0.807 0.575 0.804 0.0
O04379 1048 Protein argonaute 1 OS=Ar no no 0.804 0.535 0.747 0.0
Q7XSA2 1118 Protein argonaute 1B OS=O yes no 0.803 0.500 0.731 0.0
Q6EU14 1082 Protein argonaute 1A OS=O yes no 0.803 0.517 0.713 0.0
Q5Z5B2 1038 Protein argonaute 1D OS=O no no 0.803 0.539 0.706 0.0
Q6K972 1011 Protein argonaute 1C OS=O no no 0.806 0.555 0.701 0.0
Q851R2 1058 Protein argonaute MEL1 OS no no 0.799 0.526 0.516 1e-175
Q9SJK3 997 Protein argonaute 5 OS=Ar no no 0.783 0.547 0.496 1e-160
Q7Y001 1049 Protein argonaute 12 OS=O no no 0.787 0.523 0.467 1e-153
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function desciption
 Score = 1073 bits (2774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/706 (78%), Positives = 600/706 (84%), Gaps = 23/706 (3%)

Query: 1   MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQELQNSKPHNQTSPPTK- 59
           MPIRQMKDSSE HLVIKT      N     PKT QNGK PP      +     T   ++ 
Sbjct: 1   MPIRQMKDSSETHLVIKTQPLKHHN-----PKTVQNGKIPPPSPSPVTVTTPATVTQSQA 55

Query: 60  --------NRGRRRGRGGRKSDQNDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNG 111
                   NR RRR RGGRKSDQ DV MRPSSRP             +  + A   V   
Sbjct: 56  SSPSPPSKNRSRRRNRGGRKSDQGDVCMRPSSRPRKPPPPSQTTSSAVSVATAGEIVAVN 115

Query: 112 RSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVA 171
             +   +MG     K+ +FAPRPG+G +GTKCIVKANHF A+LP KDLNQYDVTITPEV+
Sbjct: 116 HQM---QMGV---RKNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVS 169

Query: 172 SRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGI-N 230
           S++VNRAI+AELVRLYKESDLG RLPAYDGRKSLYTAGELPF WKEF +K+VDE DGI N
Sbjct: 170 SKSVNRAIIAELVRLYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIIN 229

Query: 231 GPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRS 290
           GPKR R YKV IKF ARANMHHLG+FLAGKRAD PQEA+QILDIVLRELS KR+CP+GRS
Sbjct: 230 GPKRERSYKVAIKFVARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRS 289

Query: 291 FFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 350
           FFSP I+TPQRLG+GLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK
Sbjct: 290 FFSPDIKTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 349

Query: 351 DVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMK 410
           DVLS+ LSDSDRVKIKK LRGVKVEVTHR  VRRKYRV+GLT+QPTREL+FPVD+N TMK
Sbjct: 350 DVLSKPLSDSDRVKIKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTRELMFPVDENCTMK 409

Query: 411 SVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLK 470
           SV+EYFQEMYGFTIQHTHLPCLQVGNQKKA+YLPMEACKIVEGQRYTKRLNE+QITALLK
Sbjct: 410 SVIEYFQEMYGFTIQHTHLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLK 469

Query: 471 VTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKE 530
           VTCQRPRDRENDIL+TVQ NAYDQD YAKEFG+ ISEKLASVEARILPAPWLKYHENGKE
Sbjct: 470 VTCQRPRDRENDILRTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKE 529

Query: 531 KDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNP 590
           KDCLPQVGQWNMMNKKMINGMTVSRWAC+NFSRSVQE+VARGFCNEL QMC+VSGMEFNP
Sbjct: 530 KDCLPQVGQWNMMNKKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNP 589

Query: 591 EPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDL 650
           EPVIPI++ARPDQVEKALKHVYH+SM+KTKGKELELLLAILPDNNGSLYGDLKRICET+L
Sbjct: 590 EPVIPIYSARPDQVEKALKHVYHTSMNKTKGKELELLLAILPDNNGSLYGDLKRICETEL 649

Query: 651 GIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFNSSVELNTILC 696
           G+ISQCCLTKHVFKISKQYLANVSLKINVK  +   ++V ++ I C
Sbjct: 650 GLISQCCLTKHVFKISKQYLANVSLKINVK--MGGRNTVLVDAISC 693
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Required for reliable formation of primary and axillary shoot apical meristems. Specifies leaf adaxial identity by repressing the miR165 and miR166 microRNAs in the embryonic shoot apex, in the shoot apical meristem (SAM) and leaf. Represses the microRNA miR398 which targets CCS1 chaperone mRNAs for translational inhibition. Acts as a negative regulator of AGO1 protein level. Like AGO1, is required for stem cell function and organ polarity. Unlike AGO1, is not subjected to small RNA-mediated repression itself. Essential for multiple processes in development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query697
255552031 986 eukaryotic translation initiation factor 0.991 0.700 0.888 0.0
224102121 996 argonaute protein group [Populus trichoc 0.995 0.696 0.875 0.0
225432808 995 PREDICTED: protein argonaute 10-like [Vi 0.995 0.697 0.882 0.0
449432654 984 PREDICTED: protein argonaute 10-like [Cu 0.984 0.697 0.867 0.0
297737118 953 unnamed protein product [Vitis vinifera] 0.968 0.708 0.872 0.0
356575891 974 PREDICTED: protein argonaute 10-like [Gl 0.969 0.694 0.852 0.0
356535942 974 PREDICTED: protein argonaute 10-like [Gl 0.951 0.680 0.863 0.0
356501789 972 PREDICTED: protein argonaute 10-like [Gl 0.965 0.692 0.806 0.0
409127973 959 AGO10A splice variant 2 [Solanum lycoper 0.954 0.693 0.829 0.0
297795033 983 hypothetical protein ARALYDRAFT_917259 [ 0.967 0.685 0.777 0.0
>gi|255552031|ref|XP_002517060.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223543695|gb|EEF45223.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1258 bits (3255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/699 (88%), Positives = 648/699 (92%), Gaps = 8/699 (1%)

Query: 1   MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPH-QELQNSKPHNQTSPPTK 59
           MPIRQMK+SSEQHLV+KTHLQNTMNQ QK  K AQNGKGPP  QE  NSKP NQTSPPTK
Sbjct: 1   MPIRQMKESSEQHLVLKTHLQNTMNQPQKHHKIAQNGKGPPQSQETHNSKPQNQTSPPTK 60

Query: 60  NRGRRRGRGGRKSDQNDVFMRPSSRPCTVAHKPVNQVCDLVGSNANGAVGNGRSLCATEM 119
           NRGRRRGRGGRKSDQ DVF RPSSRPCTV HKPVNQ   L+ +  NG  GN   +C  EM
Sbjct: 61  NRGRRRGRGGRKSDQGDVFTRPSSRPCTVVHKPVNQAGGLLANAPNGNSGN---ICEMEM 117

Query: 120 G--FPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNR 177
           G  FPTSSKSL++A RPGYGQ+GTKCIVKANHFFAEL DKDLNQYDVTITPEVASRT NR
Sbjct: 118 GLGFPTSSKSLTYARRPGYGQLGTKCIVKANHFFAELLDKDLNQYDVTITPEVASRTTNR 177

Query: 178 AIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVRE 237
           AIMAELVRLYKESDLGMRLPAYDGRKSLYT+GELPF WKEF IKLVDE DG+NGPKR RE
Sbjct: 178 AIMAELVRLYKESDLGMRLPAYDGRKSLYTSGELPFAWKEFIIKLVDEDDGVNGPKRERE 237

Query: 238 YKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIR 297
           YKVVIKF ARANMHHLGQFLAGKRADAPQEALQILDIVLRELST+RYCP+GRSFFSP IR
Sbjct: 238 YKVVIKFVARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTRRYCPVGRSFFSPDIR 297

Query: 298 TPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSRTL 357
            PQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIE VAQLLGKDVLSR L
Sbjct: 298 APQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIELVAQLLGKDVLSRPL 357

Query: 358 SDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417
           SD+DR+KIKKALRGVKVEVTHRG VRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ
Sbjct: 358 SDADRIKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQ 417

Query: 418 EMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPR 477
           EMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPR
Sbjct: 418 EMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPR 477

Query: 478 DRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQV 537
           DRENDILQTVQ NAYDQD YAKEFGIKISEKLASVEARILPAPWLKYH+ GKEKDCLPQV
Sbjct: 478 DRENDILQTVQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQV 537

Query: 538 GQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIH 597
           GQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFC+ELAQMCQVSGMEFNPEPVIPI+
Sbjct: 538 GQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNPEPVIPIY 597

Query: 598 NARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCC 657
           +ARP+QVEKALKHVYH+SM+KTKGKELELLLAILPDNNG+LYGDLKRICETDLG+ISQCC
Sbjct: 598 SARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGTLYGDLKRICETDLGLISQCC 657

Query: 658 LTKHVFKISKQYLANVSLKINVKVCLSFNSSVELNTILC 696
           LTKHVFKISKQYLANVSLKINVK  +   ++V L+ I C
Sbjct: 658 LTKHVFKISKQYLANVSLKINVK--MGGRNTVLLDAISC 694

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102121|ref|XP_002312555.1| argonaute protein group [Populus trichocarpa] gi|222852375|gb|EEE89922.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432808|ref|XP_002279408.1| PREDICTED: protein argonaute 10-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432654|ref|XP_004134114.1| PREDICTED: protein argonaute 10-like [Cucumis sativus] gi|449523115|ref|XP_004168570.1| PREDICTED: protein argonaute 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297737118|emb|CBI26319.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575891|ref|XP_003556070.1| PREDICTED: protein argonaute 10-like [Glycine max] Back     alignment and taxonomy information
>gi|356535942|ref|XP_003536500.1| PREDICTED: protein argonaute 10-like [Glycine max] Back     alignment and taxonomy information
>gi|356501789|ref|XP_003519706.1| PREDICTED: protein argonaute 10-like [Glycine max] Back     alignment and taxonomy information
>gi|409127973|gb|AFV15389.1| AGO10A splice variant 2 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|297795033|ref|XP_002865401.1| hypothetical protein ARALYDRAFT_917259 [Arabidopsis lyrata subsp. lyrata] gi|297311236|gb|EFH41660.1| hypothetical protein ARALYDRAFT_917259 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query697
TAIR|locus:2170897 988 AGO10 "ARGONAUTE 10" [Arabidop 0.979 0.691 0.777 3.9e-289
UNIPROTKB|Q69VD5 979 PHN1 "Protein argonaute PNH1" 0.807 0.575 0.804 1.4e-252
UNIPROTKB|Q851R2 1058 MEL1 "Protein argonaute MEL1" 0.799 0.526 0.516 5.1e-161
TAIR|locus:2057851 997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.783 0.547 0.498 1e-146
UNIPROTKB|F1P3Z0 860 EIF2C3 "Protein argonaute-3" [ 0.784 0.636 0.371 4.5e-98
UNIPROTKB|F1MG44 860 EIF2C3 "Protein argonaute-3" [ 0.784 0.636 0.370 2e-97
UNIPROTKB|E2R0U1 860 EIF2C3 "Uncharacterized protei 0.784 0.636 0.370 2e-97
UNIPROTKB|Q9H9G7 860 EIF2C3 "Protein argonaute-3" [ 0.784 0.636 0.370 2e-97
UNIPROTKB|Q6T5B7 861 EIF2C3 "Protein argonaute-3" [ 0.784 0.635 0.371 3.2e-97
UNIPROTKB|F1LUS2 854 Eif2c3 "Protein Eif2c3" [Rattu 0.784 0.640 0.368 3.2e-97
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2777 (982.6 bits), Expect = 3.9e-289, P = 3.9e-289
 Identities = 549/706 (77%), Positives = 596/706 (84%)

Query:     1 MPIRQMKDSSEQHLVIKTHLQNTMNQSQKQPKTAQNGKGPPHQE--LQNSKPHNQT---- 54
             MPIRQMKDSSE HLVIKT      N     PKT QNGK PP     +  + P   T    
Sbjct:     1 MPIRQMKDSSETHLVIKTQPLKHHN-----PKTVQNGKIPPPSPSPVTVTTPATVTQSQA 55

Query:    55 ---SPPTKNXXXXXXXXXXKSDQNDVFMRPSSRPCTVAHKPVNQVCDLXXXXXXXXXXXX 111
                SPP+KN          KSDQ DV MRPSSRP      P +Q                
Sbjct:    56 SSPSPPSKNRSRRRNRGGRKSDQGDVCMRPSSRPRKPP--PPSQTTSSAVSVATAGEIVA 113

Query:   112 RSLCATEMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVA 171
              +    +MG     K+ +FAPRPG+G +GTKCIVKANHF A+LP KDLNQYDVTITPEV+
Sbjct:   114 VNH-QMQMGV---RKNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVS 169

Query:   172 SRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGI-N 230
             S++VNRAI+AELVRLYKESDLG RLPAYDGRKSLYTAGELPF WKEF +K+VDE DGI N
Sbjct:   170 SKSVNRAIIAELVRLYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIIN 229

Query:   231 GPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRS 290
             GPKR R YKV IKF ARANMHHLG+FLAGKRAD PQEA+QILDIVLRELS KR+CP+GRS
Sbjct:   230 GPKRERSYKVAIKFVARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRS 289

Query:   291 FFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 350
             FFSP I+TPQRLG+GLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK
Sbjct:   290 FFSPDIKTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK 349

Query:   351 DVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMK 410
             DVLS+ LSDSDRVKIKK LRGVKVEVTHR  VRRKYRV+GLT+QPTREL+FPVD+N TMK
Sbjct:   350 DVLSKPLSDSDRVKIKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTRELMFPVDENCTMK 409

Query:   411 SVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLK 470
             SV+EYFQEMYGFTIQHTHLPCLQVGNQKKA+YLPMEACKIVEGQRYTKRLNE+QITALLK
Sbjct:   410 SVIEYFQEMYGFTIQHTHLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLK 469

Query:   471 VTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKE 530
             VTCQRPRDRENDIL+TVQ NAYDQD YAKEFG+ ISEKLASVEARILPAPWLKYHENGKE
Sbjct:   470 VTCQRPRDRENDILRTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKE 529

Query:   531 KDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNP 590
             KDCLPQVGQWNMMNKKMINGMTVSRWAC+NFSRSVQE+VARGFCNEL QMC+VSGMEFNP
Sbjct:   530 KDCLPQVGQWNMMNKKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNP 589

Query:   591 EPVIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDL 650
             EPVIPI++ARPDQVEKALKHVYH+SM+KTKGKELELLLAILPDNNGSLYGDLKRICET+L
Sbjct:   590 EPVIPIYSARPDQVEKALKHVYHTSMNKTKGKELELLLAILPDNNGSLYGDLKRICETEL 649

Query:   651 GIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFNSSVELNTILC 696
             G+ISQCCLTKHVFKISKQYLANVSLKINVK  +   ++V ++ I C
Sbjct:   650 GLISQCCLTKHVFKISKQYLANVSLKINVK--MGGRNTVLVDAISC 693
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM;ISS
GO:0035019 "somatic stem cell maintenance" evidence=IMP
GO:0010586 "miRNA metabolic process" evidence=IMP
GO:0035198 "miRNA binding" evidence=IDA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3Z0 EIF2C3 "Protein argonaute-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MG44 EIF2C3 "Protein argonaute-3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R0U1 EIF2C3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9G7 EIF2C3 "Protein argonaute-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6T5B7 EIF2C3 "Protein argonaute-3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUS2 Eif2c3 "Protein Eif2c3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6EU14AGO1A_ORYSJNo assigned EC number0.71370.80340.5175yesno
Q7XSA2AGO1B_ORYSJNo assigned EC number0.73140.80340.5008yesno
Q69VD5PNH1_ORYSJNo assigned EC number0.80460.80770.5750yesno
Q9XGW1AGO10_ARATHNo assigned EC number0.78180.97990.6912yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AGO906
argonaute protein group (996 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
PLN03202 900 PLN03202, PLN03202, protein argonaute; Provisional 9e-95
cd04657 426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 7e-50
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 6e-39
pfam02170114 pfam02170, PAZ, PAZ domain 4e-34
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 1e-21
cd04658 448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 9e-17
pfam02171 296 pfam02171, Piwi, Piwi domain 2e-12
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 6e-12
smart00950 301 smart00950, Piwi, This domain is found in the prot 1e-09
smart00949138 smart00949, PAZ, This domain is named PAZ after th 4e-08
cd02826 393 cd02826, Piwi-like, Piwi-like: PIWI domain 2e-06
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information 
 Score =  312 bits (802), Expect = 9e-95
 Identities = 189/592 (31%), Positives = 300/592 (50%), Gaps = 66/592 (11%)

Query: 133 RPGYGQVGTKCIVKANHFFAEL--PDKDLNQYDVTITPE----VASRTVNRAIMAELVRL 186
           R G+G  G K  +  NHF   +  PD     Y V++T E    V  + + R ++ ++   
Sbjct: 36  RRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQET 95

Query: 187 YKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVD---------ELDGINGP----- 232
           Y  SDL  +  AYDG KSL+T G LP    EF + L D              NG      
Sbjct: 96  Y-SSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGD 154

Query: 233 -KRVR------EYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYC 285
            KR R       +KV I FAA+  M  +   L G+ ++  Q+AL++LDI+LR+ + K+ C
Sbjct: 155 RKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGC 214

Query: 286 PIGR-SFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFV 344
            + R SFF    +    LG G+    GF+ S R TQ GLSLNID+++   ++P PV++F+
Sbjct: 215 LLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFL 274

Query: 345 AQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPV- 403
             +  ++V  R     D  K K+ L+ ++V+V+       +Y+++GL+ +P +E  F + 
Sbjct: 275 --IANQNV--RDPFQIDWSKAKRMLKNLRVKVSPSNQ---EYKITGLSEKPCKEQTFSLK 327

Query: 404 -------DDNSTMKSVVEYFQEMYGFTIQHT-HLPCLQVGNQKKANYLPMEACKIVEGQR 455
                  +  +   +V +YF +  G  ++++  LPC+ VG  K+  Y P+E C +V  QR
Sbjct: 328 QRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQR 387

Query: 456 YTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEAR 515
           YTK L+  Q ++L++ + Q+P++R   +   ++ + YD D   +  GI IS +   VE R
Sbjct: 388 YTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGR 447

Query: 516 ILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCN 575
           +LPAP LK    G  +D  P+ G+WN  NKK++    + RWA +NFS        R    
Sbjct: 448 VLPAPKLKV---GNGEDFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARCD---IRHLVR 501

Query: 576 ELAQMCQVSGMEF-NPEPVIP-----IHNARPDQVEKALKHVYHSSMSKTKGKELELLLA 629
           +L +  ++ G+    P  V            P +VEK  + +     SK  G   + LL 
Sbjct: 502 DLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQI----QSKLPGPP-QFLLC 556

Query: 630 ILPD-NNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVK 680
           ILP+  N  +YG  K+   ++ GI++QC       +++ QYL NV LKIN K
Sbjct: 557 ILPERKNSDIYGPWKKKNLSEFGIVTQCIAP---TRVNDQYLTNVLLKINAK 605

Length = 900
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 697
PLN03202 900 protein argonaute; Provisional 100.0
KOG1041 876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042 845 consensus Germ-line stem cell division protein Hiw 100.0
cd04658 448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd04657 426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 99.97
cd02826 393 Piwi-like Piwi-like: PIWI domain. Domain found in 99.93
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.9
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.85
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.84
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.77
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.48
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.48
PF02171 302 Piwi: Piwi domain; InterPro: IPR003165 This domain 99.21
cd04659 404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 99.14
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.69
COG1431 685 Argonaute homolog, implicated in RNA metabolism [T 87.77
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.7e-93  Score=842.32  Aligned_cols=554  Identities=32%  Similarity=0.558  Sum_probs=463.7

Q ss_pred             CCCcccCCCCCCCCCCCCEEEEEEEEEEeEc--CCCCceEeEEEEec----CCCChHHHHHHHHHHHHHhccCccCCCcc
Q 005428          124 SSKSLSFAPRPGYGQVGTKCIVKANHFFAEL--PDKDLNQYDVTITP----EVASRTVNRAIMAELVRLYKESDLGMRLP  197 (697)
Q Consensus       124 ~~~~~~~~~RP~~Gt~G~~v~l~tN~F~i~~--~~~~iy~Y~V~i~p----~v~~k~~~r~ii~~l~~~~~~~~~~~~~~  197 (697)
                      +++...+++||+||+.|++|.|+||||+|.+  ++..||||+|+|.|    ++.++++++.|++++++.+.. .+.+..+
T Consensus        27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~  105 (900)
T PLN03202         27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDF  105 (900)
T ss_pred             cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCce
Confidence            4444577999999999999999999999997  47789999999996    455678889999999887643 3544568


Q ss_pred             eecCCceEEecCCCCCCceeEEEEeccCCC------------CCC---------CCCCCcEEEEEEEEeeeechhhHHHH
Q 005428          198 AYDGRKSLYTAGELPFVWKEFKIKLVDELD------------GIN---------GPKRVREYKVVIKFAARANMHHLGQF  256 (697)
Q Consensus       198 ~yDG~~~LyS~~~L~~~~~~~~v~l~~~~~------------~~~---------~~~~~~~~~V~Ik~~~~i~l~~L~~~  256 (697)
                      +|||+++|||+.+|+.+..++.|++.+++.            ..+         ...+.+.|+|+|++++++++.+|.+|
T Consensus       106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~  185 (900)
T PLN03202        106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA  185 (900)
T ss_pred             eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence            999999999999999866677887764210            000         01246789999999999999999999


Q ss_pred             HcCCCCCChhHHHHHHHHHHhccccCc-cccCCccccCCCCCCcccCCCcEEEeeeeeeeEEeeCCeeEEEeeccccccc
Q 005428          257 LAGKRADAPQEALQILDIVLRELSTKR-YCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFI  335 (697)
Q Consensus       257 l~~~~~~~~~~~~q~Lniilr~~~~~~-~~~~Gr~ff~~~~~~~~~l~~Gle~~~Gf~~SvR~~~~~l~LniD~s~~~F~  335 (697)
                      +.+.....+.+++|+||+|||+.++.. +..+||+||.+......+++.|+|+|+||++|||+++++++||||+++++||
T Consensus       186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~  265 (900)
T PLN03202        186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV  265 (900)
T ss_pred             HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence            999988888999999999999998654 8899999998654434578999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHhCCCccCCCCChhHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCcceEEeecCC--------C
Q 005428          336 EPLPVIEFVAQLLGKDVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDN--------S  407 (697)
Q Consensus       336 ~~~~lld~i~~~~~~~~~~r~l~~~~~~~i~~~LkglkV~~~~~~~~~r~~rI~~i~~~~a~~~~F~~~d~--------g  407 (697)
                      ++++|+|+|.++.+..+    ....++.++.++|+|++|.++|++   ++|+|.||++.++++.+|+++++        +
T Consensus       266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~~---k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~  338 (900)
T PLN03202        266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPSN---QEYKITGLSEKPCKEQTFSLKQRNGNGNEVET  338 (900)
T ss_pred             cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecCC---ceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence            99999999998865321    122356679999999999999973   57999999999999999986421        3


Q ss_pred             ceeeHHHHHHHHhCCcccCC-CCcEEEeccCCcceeecccceEecCCccccccCCHHHHHHHHHHhcCCchhHHHHHHHH
Q 005428          408 TMKSVVEYFQEMYGFTIQHT-HLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQT  486 (697)
Q Consensus       408 ~~iSV~dYF~~~Y~i~L~~p-~lPlv~~g~~~~~~ylP~Elc~i~~gQr~~~~L~~~q~~~mik~a~~~P~eR~~~I~~~  486 (697)
                      +.|||+|||+++|||+|+|| ++|||++|+..+++|||||||.|++||+++.+|++.|+++||++|+.+|.+|.+.|.++
T Consensus       339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~  418 (900)
T PLN03202        339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA  418 (900)
T ss_pred             ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            47899999999999999996 99999999888899999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCcchHHhhcCceecCcceEeeeeecCCCeeeeccCCCccccCCcccccccCCceecCCcccceeEEEEeCCCcC
Q 005428          487 VQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQ  566 (697)
Q Consensus       487 ~~~~~~~~~~~L~~fGi~I~~~~~~V~arvL~~P~I~y~~~~~~~~v~p~~g~Wnl~~~kf~~~~~i~~W~vv~~~~~~~  566 (697)
                      ++.++++.+++|++|||+|+++|++|+||||++|+|.|+++.   .+.|.+|+||+++.+|+.++.+++|++|++.+.  
T Consensus       419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~--  493 (900)
T PLN03202        419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR--  493 (900)
T ss_pred             HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc--
Confidence            988888888999999999999999999999999999998753   245779999999999999999999999988753  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCccCCCCcccccCCC--chHHHHHHHHHHHHHhhccCCCCceEEEEEeCCC-CchhhHHHH
Q 005428          567 ESVARGFCNELAQMCQVSGMEFNPEPVIPIHNAR--PDQVEKALKHVYHSSMSKTKGKELELLLAILPDN-NGSLYGDLK  643 (697)
Q Consensus       567 ~~~~~~F~~~L~~~~~~~Gm~i~~~~~~~~~~~~--~~~~~~~L~~~~~~~~~~~~~~~~~lvlvIlp~~-~~~~Y~~IK  643 (697)
                       ..+++|++.|.+.|+.+||.+..|..+.....+  ....+..++.+++++.++. ...++|+|||||++ +.++|+.||
T Consensus       494 -~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~qlv~vIlp~~~~~~~Y~~IK  571 (900)
T PLN03202        494 -CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKL-PGPPQFLLCILPERKNSDIYGPWK  571 (900)
T ss_pred             -hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhc-cCCCeEEEEEEcCCCCcchHHHHH
Confidence             358999999999999999999875433111110  0111233444444433222 24689999999974 678999999


Q ss_pred             HHhhhccCceeeeeeccccccCChHHHHHHHHHHhccCCCccccccc------------CCcccc
Q 005428          644 RICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKVCLSFNSSVE------------LNTILC  696 (697)
Q Consensus       644 ~~~d~~~GV~TQcv~~~t~~K~~~q~~~NI~lKIN~KLGG~~n~~l~------------~~tmi~  696 (697)
                      ++||+++||+||||...   +.++||++|||||||+||||+|| .++            .+||||
T Consensus       572 ~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~-~~~~~~~~~i~~~~~~~tMiv  632 (900)
T PLN03202        572 KKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNS-LLAIEHSPSIPLVSKVPTIIL  632 (900)
T ss_pred             HHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcce-eecccccccCccccCCCeEEE
Confidence            99999999999999653   34689999999999999999974 332            489986

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
4f3t_A 861 Human Argonaute-2 - Mir-20a Complex Length = 861 4e-99
4ei1_A 859 Crystal Structure Of Human Argonaute2 Length = 859 1e-98
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 2e-58
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 8e-58
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 5e-55
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 8e-55
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 7e-32
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 1e-28
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 4e-27
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 3e-26
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 1e-10
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 9e-10
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 7e-09
1vyn_A143 Structure And Nucleic Acid Binding Of The Drosophil 5e-08
1r6z_P509 The Crystal Structure Of The Argonaute2 Paz Domain 7e-08
3mj0_A124 Crystal Structure Of Drosophia Ago-Paz Domain In Co 6e-07
1t2r_A123 Structural Basis For 3' End Recognition Of Nucleic 6e-07
4f1n_A 1046 Crystal Structure Of Kluyveromyces Polysporus Argon 7e-04
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  358 bits (920), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 316/559 (56%), Gaps = 23/559 (4%)
Query: 132 PRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESD 191
           PRP +G  G    ++AN F  ++P  D+  Y++ I PE   R VNR I+  +V+ +K   
Sbjct: 29  PRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQI 88
Query: 192 LGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMH 251
            G R P +DGRK+LYTA  LP    + ++++      + G  + R +KV IK+ +  ++ 
Sbjct: 89  FGDRKPVFDGRKNLYTAMPLPIGRDKVELEVT-----LPGEGKDRIFKVSIKWVSCVSLQ 143
Query: 252 HLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQRLGDGLESWCG 311
            L   L+G+    P E +Q LD+V+R L + RY P+GRSFF+ S      LG G E W G
Sbjct: 144 ALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFG 203
Query: 312 FYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLS---RTLSDSDRVKIKKA 368
           F+QS+RP+   + LNID+++ AF +  PVIEFV ++L    +    + L+DS RVK  K 
Sbjct: 204 FHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKE 263
Query: 369 LRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMK---SVVEYFQEMYGFTIQ 425
           ++G+KVE+TH G ++RKYRV  +T +P     FP+   S      +V +YF++ +   ++
Sbjct: 264 IKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLR 323
Query: 426 HTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQ 485
           + HLPCLQVG ++K  YLP+E C IV GQR  K+L + Q + +++ T +   DR+ +I +
Sbjct: 324 YPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISK 383
Query: 486 TVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKD-CLPQVGQWNMMN 544
            ++  +++ D Y +EFGI + +++  V  R+L  P + Y   G+ K    P  G W+M N
Sbjct: 384 LMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWDMRN 441
Query: 545 KKMINGMTVSRW--ACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIHNARPD 602
           K+   G+ +  W  AC    R   E   + F  +L ++ + +GM    +P    +    D
Sbjct: 442 KQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGAD 501
Query: 603 QVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHV 662
            VE   +H+      K     L+L++ ILP     +Y ++KR+ +T LG+ +QC   K+V
Sbjct: 502 SVEPMFRHL------KNTYAGLQLVVVILPGKT-PVYAEVKRVGDTVLGMATQCVQMKNV 554
Query: 663 FKISKQYLANVSLKINVKV 681
            + + Q L+N+ LKINVK+
Sbjct: 555 QRTTPQTLSNLCLKINVKL 573
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 Back     alignment and structure
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 Back     alignment and structure
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 1e-175
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 1e-125
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 3e-62
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 4e-47
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 7e-45
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 7e-42
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 1e-41
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 2e-38
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 2e-36
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 9e-36
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 8e-33
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 3e-31
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 2e-25
3qir_A148 PIWI-like protein 2; structural genomics consortiu 1e-15
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 8e-15
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 1e-13
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 5e-10
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  522 bits (1346), Expect = e-175
 Identities = 195/568 (34%), Positives = 317/568 (55%), Gaps = 21/568 (3%)

Query: 122 PTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMA 181
           P    +    PRP +G  G    ++AN F  ++P  D+  Y++ I PE   R VNR I+ 
Sbjct: 19  PIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVE 78

Query: 182 ELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVV 241
            +V+ +K    G R P +DGRK+LYTA  LP    + ++++    +G     + R +KV 
Sbjct: 79  HMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEG-----KDRIFKVS 133

Query: 242 IKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPSIRTPQR 301
           IK+ +  ++  L   L+G+    P E +Q LD+V+R L + RY P+GRSFF+ S      
Sbjct: 134 IKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNP 193

Query: 302 LGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGK---DVLSRTLS 358
           LG G E W GF+QS+RP+   + LNID+++ AF +  PVIEFV ++L     +   + L+
Sbjct: 194 LGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLT 253

Query: 359 DSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVDDNSTMK---SVVEY 415
           DS RVK  K ++G+KVE+TH G ++RKYRV  +T +P     FP+   S      +V +Y
Sbjct: 254 DSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQY 313

Query: 416 FQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQR 475
           F++ +   +++ HLPCLQVG ++K  YLP+E C IV GQR  K+L + Q + +++ T + 
Sbjct: 314 FKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARS 373

Query: 476 PRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEARILPAPWLKYHENGKEKDCLP 535
             DR+ +I + ++  +++ D Y +EFGI + +++  V  R+L  P + Y     +    P
Sbjct: 374 APDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYG-GRNKAIATP 432

Query: 536 QVGQWNMMNKKMINGMTVSRWACINFS--RSVQESVARGFCNELAQMCQVSGMEFNPEPV 593
             G W+M NK+   G+ +  WA   F+  R   E   + F  +L ++ + +GM    +P 
Sbjct: 433 VQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPC 492

Query: 594 IPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGII 653
              +    D VE   +H+      K     L+L++ ILP     +Y ++KR+ +T LG+ 
Sbjct: 493 FCKYAQGADSVEPMFRHL------KNTYAGLQLVVVILPGKT-PVYAEVKRVGDTVLGMA 545

Query: 654 SQCCLTKHVFKISKQYLANVSLKINVKV 681
           +QC   K+V + + Q L+N+ LKINVK+
Sbjct: 546 TQCVQMKNVQRTTPQTLSNLCLKINVKL 573
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query697
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.96
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.95
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 99.95
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.95
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.94
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 99.91
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 99.91
3qir_A148 PIWI-like protein 2; structural genomics consortiu 99.9
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 99.88
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 99.88
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 99.85
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 99.83
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 99.38
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 98.63
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
Probab=100.00  E-value=4.8e-103  Score=927.25  Aligned_cols=563  Identities=34%  Similarity=0.638  Sum_probs=478.3

Q ss_pred             CCCCCCcccCCCCCCCCCCCCEEEEEEEEEEeEcCCCCceEeEEEEecCCCChHHHHHHHHHHHHHhccCccCCCcceec
Q 005428          121 FPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYD  200 (697)
Q Consensus       121 ~~~~~~~~~~~~RP~~Gt~G~~v~l~tN~F~i~~~~~~iy~Y~V~i~p~v~~k~~~r~ii~~l~~~~~~~~~~~~~~~yD  200 (697)
                      ||.+++...+|.||++||.|++|.|+||||++.+++..+|||||+|.|+..+++++++|++++++++..+.|++..++||
T Consensus        18 ~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD   97 (861)
T 4f3t_A           18 PPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD   97 (861)
T ss_dssp             -------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred             CccccccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEc
Confidence            56667788999999999999999999999999998888999999999999999999999999999876556876667999


Q ss_pred             CCceEEecCCCCCCceeEEEEeccCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHHcCCCCCChhHHHHHHHHHHhccc
Q 005428          201 GRKSLYTAGELPFVWKEFKIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELS  280 (697)
Q Consensus       201 G~~~LyS~~~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~~~~~~~~~~~~q~Lniilr~~~  280 (697)
                      |+++|||+.+|+.+...+++.+....+     .+.+.|+|+|++++++++++|.+|+.|...+.+.+++|+||||||+.+
T Consensus        98 G~~~l~s~~~L~~~~~~~~~~v~~~~~-----~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~  172 (861)
T 4f3t_A           98 GRKNLYTAMPLPIGRDKVELEVTLPGE-----GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLP  172 (861)
T ss_dssp             SSSEEEESSCCSCSSCEEEEECCC------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHH
T ss_pred             CcceEEECCcCCCCCcceEEEEecCCC-----CCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhc
Confidence            999999999999764333343322111     356789999999999999999999999988888999999999999988


Q ss_pred             cCccccCCccccCCCCCCcccCCCcEEEeeeeeeeEEeeCCeeEEEeecccccccccccHHHHHHHHhCCCcc---CCCC
Q 005428          281 TKRYCPIGRSFFSPSIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVL---SRTL  357 (697)
Q Consensus       281 ~~~~~~~Gr~ff~~~~~~~~~l~~Gle~~~Gf~~SvR~~~~~l~LniD~s~~~F~~~~~lld~i~~~~~~~~~---~r~l  357 (697)
                      +.+|..+||+||++..+...++++|+|+|+||++|||+++++++||+|+++++||++++|+|+|.++++..+.   .+.+
T Consensus       173 ~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~  252 (861)
T 4f3t_A          173 SMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPL  252 (861)
T ss_dssp             HHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCC
T ss_pred             cccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhcccc
Confidence            8899999999999875544678999999999999999999999999999999999999999999999875432   3457


Q ss_pred             ChhHHHHHHHHhcCcEEEEeecCCccceEEEecccCCCCcceEEeec-CCC--ceeeHHHHHHHHhCCcccCCCCcEEEe
Q 005428          358 SDSDRVKIKKALRGVKVEVTHRGTVRRKYRVSGLTSQPTRELVFPVD-DNS--TMKSVVEYFQEMYGFTIQHTHLPCLQV  434 (697)
Q Consensus       358 ~~~~~~~i~~~LkglkV~~~~~~~~~r~~rI~~i~~~~a~~~~F~~~-d~g--~~iSV~dYF~~~Y~i~L~~p~lPlv~~  434 (697)
                      ++.++.+++++|+|++|.++|.++.+|+|+|.+|++.++.+.+|+++ ++|  .+|||+|||+++|||+|+||+||||++
T Consensus       253 ~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~  332 (861)
T 4f3t_A          253 TDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQV  332 (861)
T ss_dssp             CHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEE
T ss_pred             CHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEe
Confidence            78889999999999999999975446789999999988888899753 233  478999999999999999999999999


Q ss_pred             ccCCcceeecccceEecCCccccccCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhcCCcchHHhhcCceecCcceEeee
Q 005428          435 GNQKKANYLPMEACKIVEGQRYTKRLNERQITALLKVTCQRPRDRENDILQTVQQNAYDQDLYAKEFGIKISEKLASVEA  514 (697)
Q Consensus       435 g~~~~~~ylP~Elc~i~~gQr~~~~L~~~q~~~mik~a~~~P~eR~~~I~~~~~~~~~~~~~~L~~fGi~I~~~~~~V~a  514 (697)
                      |.+++++|||||||.|+|||+|+++|+++|+++||++|+..|.+|.+.|.++++.++++.+++|++|||+|+++|++|+|
T Consensus       333 g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~g  412 (861)
T 4f3t_A          333 GQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTG  412 (861)
T ss_dssp             SCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEE
T ss_pred             cCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeCCeeEEEE
Confidence            98888999999999999999999999999999999999999999999999999988888889999999999999999999


Q ss_pred             eecCCCeeeeccCCCccccCCcccccccCCceecCCcccceeEEEEeCCC--cCHHHHHHHHHHHHHHHHhcCCccCCCC
Q 005428          515 RILPAPWLKYHENGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRS--VQESVARGFCNELAQMCQVSGMEFNPEP  592 (697)
Q Consensus       515 rvL~~P~I~y~~~~~~~~v~p~~g~Wnl~~~kf~~~~~i~~W~vv~~~~~--~~~~~~~~F~~~L~~~~~~~Gm~i~~~~  592 (697)
                      ||||+|.|.|+++++ ..+.|.+|+|++++++|+.++.+++|++++++..  ++++.+++|++.|.+.|+.+||.+..+|
T Consensus       413 RvL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p  491 (861)
T 4f3t_A          413 RVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQP  491 (861)
T ss_dssp             EECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCC
T ss_pred             EEecCceEEecCCcc-cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCC
Confidence            999999999997532 1346789999999999999999999999998742  4577899999999999999999998656


Q ss_pred             cccccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEEeCCCCchhhHHHHHHhhhccCceeeeeeccccccCChHHHHH
Q 005428          593 VIPIHNARPDQVEKALKHVYHSSMSKTKGKELELLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLAN  672 (697)
Q Consensus       593 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~lvlvIlp~~~~~~Y~~IK~~~d~~~GV~TQcv~~~t~~K~~~q~~~N  672 (697)
                      .+.......+.++..++.+.+.      ..+++|||||||++ .++|+.||++||+++||+||||+.+++.|.++||++|
T Consensus       492 ~~~~~~~~~~~~~~~~~~l~~~------~~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~n  564 (861)
T 4f3t_A          492 CFCKYAQGADSVEPMFRHLKNT------YAGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSN  564 (861)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH------STTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHH
T ss_pred             eEEEecCchHHHHHHHHHHHhh------cCCCcEEEEEeCCC-ccHHHHHHHHhcccCCcceEEEEecccccccHHHHHH
Confidence            5422222334455555544332      14689999999965 5789999999999999999999999999989999999


Q ss_pred             HHHHHhccCCCcccccc--------cCCcccc
Q 005428          673 VSLKINVKVCLSFNSSV--------ELNTILC  696 (697)
Q Consensus       673 I~lKIN~KLGG~~n~~l--------~~~tmi~  696 (697)
                      |+||||+||||+||..+        +.+||||
T Consensus       565 i~lKiN~KlGG~n~~l~~~~~~~~~~~~tmii  596 (861)
T 4f3t_A          565 LCLKINVKLGGVNNILLPQGRPPVFQQPVIFL  596 (861)
T ss_dssp             HHHHHHHHTTCBCCEECSTTSCGGGGSCEEEE
T ss_pred             HHHHHHHhcCCcceeccccccccccCCceEEE
Confidence            99999999999987432        2489986
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 697
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 1e-43
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 2e-42
d1yvua2 392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 2e-19
d1w9ha1 316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 2e-11
d1u04a2 447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 6e-05
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 1e-04
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute 2
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  151 bits (382), Expect = 1e-43
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 338 LPVIEFVAQLLGK-DVLSRTLSDSDRVKIKKALRGVKVEVTHRGTVR---RKYRVSGLTS 393
           +P+IE++ +   K  + + T  D  R  ++  LRG+ V  T   + +   R YRV+GL+ 
Sbjct: 5   MPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSR 64

Query: 394 QPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEG 453
            P     F  D     K  +  +     + ++   L CL VG+  K+  LP+E C I EG
Sbjct: 65  APASSETFEHDG---KKVTIASYFHSRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEG 121

Query: 454 Q 454
           Q
Sbjct: 122 Q 122
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query697
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.94
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.92
d1yvua2 392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 99.7
d1u04a2 447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.54
d1w9ha1 316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 99.45
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.7e-34  Score=294.72  Aligned_cols=284  Identities=12%  Similarity=0.039  Sum_probs=202.4

Q ss_pred             EEEEEEEEEEeE--c-CCCCceEeEEEEecCCCChHHHHHHHHHHHHHhccCccCCCcceecCCceEEecCCCCCCceeE
Q 005428          142 KCIVKANHFFAE--L-PDKDLNQYDVTITPEVASRTVNRAIMAELVRLYKESDLGMRLPAYDGRKSLYTAGELPFVWKEF  218 (697)
Q Consensus       142 ~v~l~tN~F~i~--~-~~~~iy~Y~V~i~p~v~~k~~~r~ii~~l~~~~~~~~~~~~~~~yDG~~~LyS~~~L~~~~~~~  218 (697)
                      ++.+.+|+|+|.  . |+ .||+|+|+|.|++++++++..+++...+     .+| ..++|||. .||++.+|+.+. + 
T Consensus         1 ~~~~~~N~~ki~~~~~p~-~lyqYrV~f~P~~e~~~~r~~ll~~h~~-----~~G-~~~~fDg~-~l~~~kkL~~~~-e-   70 (322)
T d1u04a1           1 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQKEGYSIYRLAYE-----NVG-IVIDPENL-IIATTKELEYEG-E-   70 (322)
T ss_dssp             EEEEEBSEEEBCGGGSCS-CEEEEEC------------CCHHHHHHH-----TTE-EEEETTTT-EEEESSCCCCSS-C-
T ss_pred             CeEEEEEEEEeecccCCc-eeEEEEecCCChhhhHHHHHHHHHHHHH-----hcC-eEEecCCc-EEecccccCcce-e-
Confidence            578999999995  3 55 6999999999999999888877654432     344 56789996 899999998643 1 


Q ss_pred             EEEeccCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHHcCCCCCChhHHHHHHHHHHhccc-cCccccCCccccCCCCC
Q 005428          219 KIKLVDELDGINGPKRVREYKVVIKFAARANMHHLGQFLAGKRADAPQEALQILDIVLRELS-TKRYCPIGRSFFSPSIR  297 (697)
Q Consensus       219 ~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~~~~~~~~~~~~q~Lniilr~~~-~~~~~~~Gr~ff~~~~~  297 (697)
                                         +.++++......             ..+.+++|++|+++|..+ ..++..+||+||+|...
T Consensus        71 -------------------~~~~~~~~~~~~-------------~~~~~~~q~~Nil~r~~m~~l~l~~iGRnyydp~~~  118 (322)
T d1u04a1          71 -------------------FIPEGEISFSEL-------------RNDYQSKLVLRLLKENGIGEYELSKLLRKFRKPKTF  118 (322)
T ss_dssp             -------------------CEEEEEECGGGS-------------CHHHHHHHHHHHHHHTTCSHHHHHHHHTTTSCCEEE
T ss_pred             -------------------EEEEEEEEcccC-------------CCcHHHHHHHHHHHHHHhhhcceeeeccccCCCCCc
Confidence                               123344333322             245679999999999987 57899999999998632


Q ss_pred             CcccCCCcEEEeeeeeeeEEeeCCeeEEEeecccccccccccHHHHHHHHhCCC-----ccCCCCChhHHHHHHHHhcCc
Q 005428          298 TPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKD-----VLSRTLSDSDRVKIKKALRGV  372 (697)
Q Consensus       298 ~~~~l~~Gle~~~Gf~~SvR~~~~~l~LniD~s~~~F~~~~~lld~i~~~~~~~-----~~~r~l~~~~~~~i~~~Lkgl  372 (697)
                            ..+++|+||.+||+..+++++|++|++|++ .+..||+|+|.+.....     ...+.. ...+..+.+.|.|.
T Consensus       119 ------~~levwPGy~TSI~q~E~~ilLc~disHKV-mR~~Tvld~l~~~~~~~~~~~~~~~~~~-~~~~~~~~k~lvG~  190 (322)
T d1u04a1         119 ------GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDPKELEEFLMTHKENL-MLKDIASPLKTVYK  190 (322)
T ss_dssp             ------TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCHHHHHHHHHHSTTTC-EEEETTSTTCCEEE
T ss_pred             ------cceEEcCCeeeeehhhcCceEEEEEeeeeE-eehhhHHHHHHHHHHhhhhhhhhhhhhh-HHHHhhhhhheece
Confidence                  468999999999999999999999999998 89999999997643210     000000 00112344668899


Q ss_pred             EEEEeecCCccceEEEe---cccCCCCcceEEeecCCCceeeHHHHHHHHhCCcccCCCCcEEEeccC-------Cccee
Q 005428          373 KVEVTHRGTVRRKYRVS---GLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQ-------KKANY  442 (697)
Q Consensus       373 kV~~~~~~~~~r~~rI~---~i~~~~a~~~~F~~~d~g~~iSV~dYF~~~Y~i~L~~p~lPlv~~g~~-------~~~~y  442 (697)
                      .|.+.|++   ++|+++   +++++.++..+|..  ++ .+|+.|||+++||+   +.+||++++..+       ...+|
T Consensus       191 iVLT~YNN---kTy~~di~~dvd~~~~p~~t~~~--~~-~~s~ieYYk~~Yni---D~~QPlLvs~~k~~~~~~~~~~i~  261 (322)
T d1u04a1         191 PCFEEYTK---KPKLDHNQEIVKYWYNYHIERYW--NT-PEAKLEFYRKFGQV---DLKQPAILAKFASKIKKNKNYKIY  261 (322)
T ss_dssp             ECBCTTSS---CBCEECCHHHHHHHHHHHHHHHC--CS-HHHHHHHHHHHCSC---CTTSCEEEEEESCC-----CCCEE
T ss_pred             EEEeccCC---cceecchhhcCCcccCccceecc--CC-cccHHHHHHHhcCC---CCCCceEEEecccccCCCCceEEE
Confidence            99999963   457655   46666666666652  23 45999999999997   668999998532       34589


Q ss_pred             ecccceEecCCccccccCCHHHHH----HHHHHhcCCchhHHHHHHHHHHhhc
Q 005428          443 LPMEACKIVEGQRYTKRLNERQIT----ALLKVTCQRPRDRENDILQTVQQNA  491 (697)
Q Consensus       443 lP~Elc~i~~gQr~~~~L~~~q~~----~mik~a~~~P~eR~~~I~~~~~~~~  491 (697)
                      |+||||.+       ++|+|++++    +|..++...|.+|.+.+.++++.+.
T Consensus       262 LiPELc~l-------TGltD~mR~dlMk~la~~Trl~P~~R~~~l~~f~~~l~  307 (322)
T d1u04a1         262 LLPQLVVP-------TYNAEQLESDVAKEILEYTKLMPEERKELLENILAEVD  307 (322)
T ss_dssp             ECTTTEEE-------EEEGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_pred             EchHhhhh-------cCCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            99999999       688888876    6788999999999999999998865
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure