Citrus Sinensis ID: 005468
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 695 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LKS5 | 700 | Long chain acyl-CoA synth | yes | no | 0.997 | 0.99 | 0.741 | 0.0 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | no | 0.982 | 0.974 | 0.792 | 0.0 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | yes | no | 0.860 | 0.896 | 0.426 | 1e-144 | |
| P33124 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.812 | 0.810 | 0.459 | 1e-141 | |
| Q9JID6 | 698 | Long-chain-fatty-acid--Co | yes | no | 0.863 | 0.859 | 0.422 | 1e-140 | |
| Q91WC3 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.811 | 0.809 | 0.457 | 1e-139 | |
| P33121 | 698 | Long-chain-fatty-acid--Co | no | no | 0.861 | 0.858 | 0.421 | 1e-139 | |
| Q9UKU0 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.812 | 0.810 | 0.461 | 1e-138 | |
| P41216 | 699 | Long-chain-fatty-acid--Co | no | no | 0.860 | 0.855 | 0.431 | 1e-138 | |
| P18163 | 699 | Long-chain-fatty-acid--Co | no | no | 0.861 | 0.856 | 0.420 | 1e-136 |
| >sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/697 (74%), Positives = 606/697 (86%), Gaps = 4/697 (0%)
Query: 3 STAAQRRLKAIHGHL-LCADDSSSSQLRHNPTAGE---YALEQGYSVVLPEKLDTGKWNV 58
++ QRRL+ I H+ + SS L N TA + E YSVVLPEKLDTGKWNV
Sbjct: 4 ASPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNV 63
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSP KLVSRFPDHPEIGT HDNFV AV+T+ + KYLGTRVR DGT+GEY WMTYGE
Sbjct: 64 YRSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGE 123
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
A + R +GSGL++HG+++G C+GLYF+NRPEWL+VDHAC+AYSF+SVPLYDTLGPDAVK
Sbjct: 124 AASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVK 183
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
++VNHA++QA+FCVPQTLN LLS L+E+P++RLIVV+GG D+ +PSLP TGV I++Y
Sbjct: 184 FVVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQK 243
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
LLSQGRS+L PFSPPKP+D+ATICYTSGTTGTPKG VL+HGNLIA+VAG+++ +F+PSD
Sbjct: 244 LLSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSD 303
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQ+M VY GVAVGFYQGD KLMDD A LRPT+FCSVPRLYNRIY
Sbjct: 304 VYISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIY 363
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
GITSAV++SG +++RLF AYN+KKQA+++G+ PS WD+LVFNKIK+KLGGRVRFMGS
Sbjct: 364 DGITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGS 423
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV+DFL+ICFG V EGYGMTETSC+IS +D+GDNLSGHVGSPN ACE+KLVD
Sbjct: 424 GASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVD 483
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IFKGYYKDE QT+E++D DGW HTGDIG+W+PGGRL
Sbjct: 484 VPEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRL 543
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKA 598
KIIDRKKNIFKLAQGEYIA EKIENVY KC+FV QCF++GDSFNS+LVAIVSVD + +K
Sbjct: 544 KIIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKD 603
Query: 599 WAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGL 658
WAASEGI+YE+L QLCNDPR R VLA+MD LGREAQLRGFEF KAVTLV EPFT+ENGL
Sbjct: 604 WAASEGIKYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGL 663
Query: 659 LTPTFKIKRPQAKQYFAKAIADMYAELSRSDPSPNTL 695
LTPTFKIKRPQAK YFA+AI+ MYAE++ S+P P+ L
Sbjct: 664 LTPTFKIKRPQAKAYFAEAISKMYAEIAASNPIPSKL 700
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1116 bits (2887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/684 (79%), Positives = 623/684 (91%), Gaps = 1/684 (0%)
Query: 10 LKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLV 69
+ AIH HL+ + SS LR NPTAGE+ L+ GYSVVLPEKL+TG WNVYRS++SP KLV
Sbjct: 16 INAIHSHLVTSS-RSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSAKSPFKLV 74
Query: 70 SRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSG 129
SRFPDHP+I T HDNF AV FRDYKYLGTRVRVDGTVG+YKWMTYGEAGTART +GSG
Sbjct: 75 SRFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSG 134
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 189
L++HGI GS +G+YF+NRPEWLIVDHACS+YS++SVPLYDTLGPDAVK+IVNHA+VQA+
Sbjct: 135 LVHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAI 194
Query: 190 FCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
FCV +TLNSLLSCLSE+P+VRL+VV+GG+ + +PSLP ++GV++++YS LL+QGRSN Q
Sbjct: 195 FCVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQR 254
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309
F PPKPDDVATICYTSGTTGTPKG VL+H NLIA+VAG++ KF+ SDVYISYLPLAHI
Sbjct: 255 FFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYISYLPLAHI 314
Query: 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
YERANQ++TVY GVAVGFYQGDNMKL+DD+AALRPTVF SVPRLYNRIYAGI +AV+TSG
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
GL+ERLFNAAYNAKKQA+L+GK+ SP+WDRLVFNKIKD+LGGRVRFM SGASPLSP+V++
Sbjct: 375 GLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVME 434
Query: 430 FLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
FLK+CFGGRVTEGYGMTETSC+IS +DEGDNL+GHVGSPN ACE+KLVDVPEMNYTS DQ
Sbjct: 435 FLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQ 494
Query: 490 PCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
P PRGEICVRGP+IF GYYKDEIQTKEVIDEDGW HTGDIG+W+PGGRLKIIDRKKNIFK
Sbjct: 495 PHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 554
Query: 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYEN 609
LAQGEYIA EKIENVYAKCKFVGQCF+YGDSFNS+LVA+VSVD D LK+WAASEGI+ +
Sbjct: 555 LAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEGIKGGD 614
Query: 610 LEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQ 669
L +LCN+PR +AAVL+DMD++GREAQLRGFEF KAVTLVLEPFT+ENGLLTPTFKIKRPQ
Sbjct: 615 LRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGLLTPTFKIKRPQ 674
Query: 670 AKQYFAKAIADMYAELSRSDPSPN 693
AK+YFA+AI +MY EL SDPS N
Sbjct: 675 AKEYFAEAITNMYKELGASDPSAN 698
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/614 (42%), Positives = 373/614 (60%), Gaps = 16/614 (2%)
Query: 86 VRAVDTFRDYKYLGTR-VRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLY 144
V ++ D +LG R + DG G+YKW++Y +A +GS L+ G++KG IG++
Sbjct: 59 VYRINKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIF 118
Query: 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS 204
+NRPEW++ D A +S + V LY TLG +A++Y+VNH+ + + C + + +LS
Sbjct: 119 SINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILSMPG 178
Query: 205 EVPTVRLIVVIGGIDDQIPSLPI-----TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVA 259
T++ IV D +P + V++ S+ G N P P+D+
Sbjct: 179 T--TIKTIVSY----DPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPEDLC 232
Query: 260 TICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSDVYISYLPLAHIYERANQVMT 318
T+ YTSG+TG PKG +L+H N+++ VAGA P DV++SYLPLAH +ERA +
Sbjct: 233 TLLYTSGSTGNPKGVMLTHTNMVSEVAGANFSPAGVIPEDVHMSYLPLAHSFERAVVSLM 292
Query: 319 VYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378
Y G +GF+ G +L +D+ LRPT C PR++ R++ + V L++ LFN
Sbjct: 293 CYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNW 352
Query: 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
N+K+ A+ G +P+WD+LVF+K KD+LGGRV+F+ SG++PL P + +FL+ CF
Sbjct: 353 GLNSKQSALRLGST-TPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCP 411
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
V GYG++E S DN GHVG P +ACE+KL+DVPEMNY S D+PCPRGE+C+
Sbjct: 412 VVSGYGLSENVGGASVAYPEDNNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEVCI 471
Query: 499 RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558
RG +FKGY+KD +TKE + EDGWFHTGDIG W G L IIDRKKNIFKL+QGEY+AA
Sbjct: 472 RGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSIIDRKKNIFKLSQGEYVAA 531
Query: 559 EKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE--GIQYENLEQLCND 616
E +E+V+ + F Q FVYGDS NS LV +V D + ++ AS+ + N L
Sbjct: 532 EYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASKYPELDVSNHATLAKS 591
Query: 617 PRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676
+L+ D+ EA+L GFE +K + + EPFT EN LLTP+FK KRPQ K+ +
Sbjct: 592 KELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNLLTPSFKPKRPQLKERYQT 651
Query: 677 AIADMYAELSRSDP 690
I +YAE R P
Sbjct: 652 IIDTLYAEYKRDHP 665
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P33124|ACSL6_RAT Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1290), Expect = e-141, Method: Compositional matrix adjust.
Identities = 269/585 (45%), Positives = 369/585 (63%), Gaps = 20/585 (3%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ IG++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP +++YI+N A + V P LL + E P ++L++++ DD +
Sbjct: 178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N + PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AG--ATLGTKFYPS--DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G +++ P+ DV+ SYLPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTESQWAPTCADVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY TS+ + GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRG 638
DS + LV IV D + + WA +GI+ N ++LC + A+L DM LG+E+ L
Sbjct: 591 DSLKAFLVGIVVPDPEVMPCWAQKKGIE-GNYQELCKSKELKKAILDDMVMLGKESGLHS 649
Query: 639 FEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 683
FE VKA+ + + F+V+NGLLTPT K KRP+ ++YF K I ++Y+
Sbjct: 650 FEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust.
Identities = 263/622 (42%), Positives = 388/622 (62%), Gaps = 22/622 (3%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + + LG+R + D Y+W++Y + +GS L+ G
Sbjct: 86 YDDVRTLYDVFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVEDLSECIGSALLQKG 141
Query: 135 I--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IG++ NRPEW+I++ AC AYS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 142 FQASPDQFIGIFAQNRPEWVIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFAD 201
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IVV+ ++ GV++++ + GR+N +
Sbjct: 202 KPEKARILLESVENKLTPGLKIIVVMDSYGSELVEQGKKCGVEVISLKAMEGLGRANRRK 261
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYPSDVYISYLP 305
PP+PDD+A IC+TSGTTG PKGA+++H N+++ + T+ SD++IS+LP
Sbjct: 262 PKPPEPDDLAVICFTSGTTGNPKGAMITHKNVVSDCSAFVKATEKALVLNASDIHISFLP 321
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH+YE+ Q + + G +GF+QGD LMDD+ AL+PT+F VPRL NR++ I +
Sbjct: 322 LAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMFDRIFAQA 381
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
T+ ++ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 382 NTT--VKRWLLDFASKRKEAELRSGIIRNNS-VWDKLIFHKIQSSLGGKVRLMVTGAAPV 438
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN 483
S VL FL+ G + EGYG TE + S GD +GHVG+P IKLVDV EMN
Sbjct: 439 SATVLTFLRAALGCQFYEGYGQTECTAGCSLSVPGDWTAGHVGAPMPCNFIKLVDVEEMN 498
Query: 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
Y + GE+CV+GP +FKGY KD +T E +D+DGW HTGDIG W+P G LKIIDR
Sbjct: 499 YMAA---MGEGEVCVKGPNVFKGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDR 555
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603
KK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AIV D ++L +WA
Sbjct: 556 KKHIFKLAQGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAIVVPDAESLASWARKR 615
Query: 604 GIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTF 663
G + + E+LC + + A+L DM +G+++ L+ FE V+ + L E F+V+NGLLTPT
Sbjct: 616 GFE-GSFEELCRNKDVKKAILEDMVRIGKDSGLKSFEQVRGIALHPELFSVDNGLLTPTM 674
Query: 664 KIKRPQAKQYFAKAIADMYAEL 685
K KRP+ + YF I ++Y+ +
Sbjct: 675 KAKRPELRNYFRSQIDELYSTI 696
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Cavia porcellus (taxid: 10141) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q91WC3|ACSL6_MOUSE Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 267/584 (45%), Positives = 363/584 (62%), Gaps = 20/584 (3%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ +G++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFVGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP ++ YI+N A + V P LL + E P ++L++++ +D +
Sbjct: 178 YDTLGPGSISYIINTADICTVIVDKPHKATLLLEHVERKETPGLKLVILMEPFEDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + GR N PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDCGRENHHAPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP-RGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY + C GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWT----CKGEGEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRG 638
DS + LV IV D + + +WA +GI+ ++LC + A+L DM LG+E+ L
Sbjct: 591 DSLKAFLVGIVVPDPEVMPSWAQKKGIE-GTYQELCMKKELKKAILDDMVMLGKESGLHS 649
Query: 639 FEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 682
FE VKA+ + + F+V+NGLLTPT K KRP+ ++YF K I ++Y
Sbjct: 650 FEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 693
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 262/621 (42%), Positives = 380/621 (61%), Gaps = 22/621 (3%)
Query: 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGIS 136
++ T ++ F R + + LG+R + D Y+W++Y + +GS LI G
Sbjct: 88 DVTTLYEGFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVAELSECIGSALIQKGFK 143
Query: 137 KG--SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC-VP 193
IG++ NRPEW+I++ C AYS + VPLYDTLG +A+ YIVN A + VF P
Sbjct: 144 TAPDQFIGIFAQNRPEWVIIEQGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVFVDKP 203
Query: 194 QTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFS 251
+ LL + +P +++IVV+ ++ GV++ + + GR+N +
Sbjct: 204 EKAKLLLEGVENKLIPGLKIIVVMDAYGSELVERGQRCGVEVTSMKAMEDLGRANRRKPK 263
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY----PSDVYISYLPLA 307
PP P+D+A IC+TSGTTG PKGA+++H N+++ + T+ P D IS+LPLA
Sbjct: 264 PPAPEDLAVICFTSGTTGNPKGAMVTHRNIVSDCSAFVKATENTVNPCPDDTLISFLPLA 323
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
H++ER + + + G +GF+QGD LMDD+ L+PTVF VPRL NR++ I T
Sbjct: 324 HMFERVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFPVVPRLLNRMFDRIFGQANT 383
Query: 368 SGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSP 425
+ L+ L + A K+ + SG +N S +WDRL+F+K++ LGGRVR M +GA+P+S
Sbjct: 384 T--LKRWLLDFASKRKEAELRSGIIRNNS-LWDRLIFHKVQSSLGGRVRLMVTGAAPVSA 440
Query: 426 DVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYT 485
VL FL+ G + EGYG TE + GD +GHVG+P IKLVDV EMNY
Sbjct: 441 TVLTFLRAALGCQFYEGYGQTECTAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVEEMNYM 500
Query: 486 SEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
+ + GE+CV+GP +F+GY KD +T E +D+DGW HTGDIG W+P G LKIIDRKK
Sbjct: 501 AAEG---EGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKK 557
Query: 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGI 605
+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AIV D + L +WA G
Sbjct: 558 HIFKLAQGEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGF 617
Query: 606 QYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKI 665
+ + E+LC + + A+L DM LG+++ L+ FE VK +TL E F+++NGLLTPT K
Sbjct: 618 E-GSFEELCRNKDVKKAILEDMVRLGKDSGLKPFEQVKGITLHPELFSIDNGLLTPTMKA 676
Query: 666 KRPQAKQYFAKAIADMYAELS 686
KRP+ + YF I D+Y+ +
Sbjct: 677 KRPELRNYFRSQIDDLYSTIK 697
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9UKU0|ACSL6_HUMAN Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 270/585 (46%), Positives = 364/585 (62%), Gaps = 20/585 (3%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H + IG++ NRPEW+IV+ AC YS + VPL
Sbjct: 118 YQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP A++YI+N A + V PQ LL + E P ++LI+++ ++ +
Sbjct: 178 YDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVERKETPGLKLIILMDPFEEALKER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N Q PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GQKCGVVIKSMQAVEDCGQENHQAPVPPQPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
L PT+F VPRL NR+Y I S T L+ L A K+ + SG +N S +WD
Sbjct: 358 LCPTIFPVVPRLLNRMYDKIFSQANTP--LKRWLLEFAAKRKQAEVRSGIIRNDS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP-RGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVDV E+NY + C GEICVRGP +FKGY KD +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDVEELNYWA----CKGEGEICVRGPNVFKGYLKDPDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPAGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSQPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRG 638
DS + LV IV D + + +WA GI+ LC + + A+L DM LG+E+ L
Sbjct: 591 DSLKAFLVGIVVPDPEVMPSWAQKRGIE-GTYADLCTNKDLKKAILEDMVRLGKESGLHS 649
Query: 639 FEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 683
FE VKA+ + + F+V+NGLLTPT K KRP+ ++YF K I ++Y+
Sbjct: 650 FEQVKAIHIHSDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust.
Identities = 269/624 (43%), Positives = 381/624 (61%), Gaps = 26/624 (4%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + + LG+R Y+W++Y E +GSGLI G
Sbjct: 87 YDDVRTMYDGFQRGIQVSNNGPCLGSR----KPNQPYEWISYKEVAELAECIGSGLIQKG 142
Query: 135 ISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IGL+ NRPEW+IV+ C +YS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 143 FKPCSEQFIGLFSQNRPEWVIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIFAD 202
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IV++ + GV+I++ L GR N
Sbjct: 203 KPEKAKLLLEGVENKLTPCLKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRVNRVK 262
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK--FYPS--DVYISYLP 305
PP+P+D+A IC+TSGTTG PKGA+++H N+I +G T+ F S DV IS+LP
Sbjct: 263 PKPPEPEDLAIICFTSGTTGNPKGAMITHQNIINDCSGFIKATESAFIASTDDVLISFLP 322
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH++E + + + G +GF+QGD LMDD+ L+PT+F VPRL NR++ I
Sbjct: 323 LAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQA 382
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
TS L+ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 383 NTS--LKRWLLDFASKRKEAELRSGIVRNNS-LWDKLIFHKIQSSLGGKVRLMITGAAPV 439
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
S VL FL+ G + EGYG TE + C +S GD +GHVG+P +KLVDV E
Sbjct: 440 SATVLTFLRTALGCQFYEGYGQTECTAGCCLSL--PGDWTAGHVGAPMPCNYVKLVDVEE 497
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNY + GE+CV+G +FKGY KD +T E +D+DGW HTGDIG W+P G LKII
Sbjct: 498 MNYLASKG---EGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTLKII 554
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601
DRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+A+V D ++L +WA
Sbjct: 555 DRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAVVVPDVESLPSWAQ 614
Query: 602 SEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTP 661
G+Q + E+LC + A+L D+ LG+EA L+ FE VK + + E F+++NGLLTP
Sbjct: 615 KRGLQ-GSFEELCRNKDINKAILDDLLKLGKEAGLKPFEQVKGIAVHPELFSIDNGLLTP 673
Query: 662 TFKIKRPQAKQYFAKAIADMYAEL 685
T K KRP+ + YF I ++YA +
Sbjct: 674 TLKAKRPELRNYFRSQIDELYATI 697
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P18163|ACSL1_RAT Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/625 (42%), Positives = 375/625 (60%), Gaps = 26/625 (4%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + D LG+R Y+W++Y + +GS LI G
Sbjct: 87 YDDVRTMYDGFQRGIQVSNDGPCLGSR----KPNQPYEWISYKQVAEMAECIGSALIQKG 142
Query: 135 ISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IG++ NRPEW+ ++ C YS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 143 FKPCSEQFIGIFSQNRPEWVTIEQGCFTYSMVVVPLYDTLGTDAITYIVNKAELSVIFAD 202
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IV++ D+ + GV+I+ L GR N
Sbjct: 203 KPEKAKLLLEGVENKLTPCLKIIVIMDSYDNDLVERGQKCGVEIIGLKALEDLGRVNRTK 262
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYPSDVYISYLP 305
PP+P+D+A IC+TSGTTG PKGA+++H N++ +G T+ P DV IS+LP
Sbjct: 263 PKPPEPEDLAIICFTSGTTGNPKGAMVTHQNIMNDCSGFIKATESAFIASPEDVLISFLP 322
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH++E + + + G +GF+QGD LMDD+ L+PT+F VPRL NR++ I
Sbjct: 323 LAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQA 382
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
TS ++ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 383 NTS--VKRWLLDFASKRKEAELRSGIVRNNS-LWDKLIFHKIQSSLGGKVRLMITGAAPV 439
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
S VL FL+ G + EGYG TE + C +S GD +GHVG+P IKLVDV +
Sbjct: 440 SATVLTFLRAALGCQFYEGYGQTECTAGCCLSL--PGDWTAGHVGAPMPCNYIKLVDVED 497
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNY + GE+CV+G +FKGY KD +T E +D+DGW HTGDIG W+P G LKII
Sbjct: 498 MNYQAAKG---EGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTLKII 554
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601
DRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AIV D + L +WA
Sbjct: 555 DRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAIVVPDVEILPSWAQ 614
Query: 602 SEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTP 661
G Q + E+LC + A+L DM LG+ A L+ FE VK + + E F+++NGLLTP
Sbjct: 615 KRGFQ-GSFEELCRNKDINKAILEDMVKLGKNAGLKPFEQVKGIAVHPELFSIDNGLLTP 673
Query: 662 TFKIKRPQAKQYFAKAIADMYAELS 686
T K KRP+ + YF I ++Y+ +
Sbjct: 674 TLKAKRPELRNYFRSQIDELYSTIK 698
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 695 | ||||||
| 255552335 | 694 | Acyl-CoA synthetase [Ricinus communis] g | 0.997 | 0.998 | 0.831 | 0.0 | |
| 225432604 | 697 | PREDICTED: long chain acyl-CoA synthetas | 0.994 | 0.991 | 0.834 | 0.0 | |
| 356574400 | 698 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.995 | 0.823 | 0.0 | |
| 356534226 | 696 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.998 | 0.820 | 0.0 | |
| 224111218 | 705 | predicted protein [Populus trichocarpa] | 0.987 | 0.973 | 0.814 | 0.0 | |
| 449432710 | 695 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 1.0 | 0.801 | 0.0 | |
| 357444293 | 697 | Annotation was added to scaffolds in Nov | 1.0 | 0.997 | 0.816 | 0.0 | |
| 357444291 | 713 | Annotation was added to scaffolds in Nov | 1.0 | 0.974 | 0.798 | 0.0 | |
| 147863228 | 703 | hypothetical protein VITISV_002313 [Viti | 0.998 | 0.987 | 0.753 | 0.0 | |
| 224123160 | 695 | predicted protein [Populus trichocarpa] | 0.998 | 0.998 | 0.745 | 0.0 |
| >gi|255552335|ref|XP_002517212.1| Acyl-CoA synthetase [Ricinus communis] gi|83320525|gb|ABC02881.1| ACS2 [Ricinus communis] gi|223543847|gb|EEF45375.1| Acyl-CoA synthetase [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1241 bits (3212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/693 (83%), Positives = 643/693 (92%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
MD +AQRR++AIHGHLL A D S S LR NPTAGE+ EQGYSVVLPEKL TGKWNVYR
Sbjct: 1 MDMDSAQRRIQAIHGHLLAARDCSPSHLRLNPTAGEFFSEQGYSVVLPEKLQTGKWNVYR 60
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S+RSPL+LVSRFPDHP+IGT HDNF R+VDTFRDYKYLGTR+RVDGTVGEYKWMTYGEAG
Sbjct: 61 SARSPLRLVSRFPDHPDIGTLHDNFARSVDTFRDYKYLGTRIRVDGTVGEYKWMTYGEAG 120
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
TART +GSGL++HGI KGS +GLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK+I
Sbjct: 121 TARTAIGSGLMHHGIPKGSSVGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKFI 180
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQA+FCVPQTL LLS LSE+ +VRLIVV+GG+DDQ+PSLP +TGVQ++TYS LL
Sbjct: 181 VNHADVQAIFCVPQTLTPLLSFLSEISSVRLIVVVGGMDDQMPSLPSSTGVQVVTYSKLL 240
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG SNLQPF PPKP+DVATICYTSGTTGTPKGA L+HGNLIA+VAGATL TKFYPSD+Y
Sbjct: 241 SQGHSNLQPFCPPKPEDVATICYTSGTTGTPKGAALTHGNLIANVAGATLATKFYPSDIY 300
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV+TVY GVAVGFYQGDN+KLMDDMAALRPT+FCSVPRLYNRIYAG
Sbjct: 301 ISYLPLAHIYERANQVLTVYYGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAG 360
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
IT+AV+TSGGLRERLFNAAYNAKKQA+L+G++PSPMWDRLVF+KIK KLGGRVRF+ SGA
Sbjct: 361 ITNAVKTSGGLRERLFNAAYNAKKQAILNGRSPSPMWDRLVFDKIKAKLGGRVRFIASGA 420
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPDV++FLKICFGGRV+EGYGMTETSC+IS ++EGDNL+GHVGSPN ACEIKLVDVP
Sbjct: 421 SPLSPDVMEFLKICFGGRVSEGYGMTETSCVISAMEEGDNLTGHVGSPNPACEIKLVDVP 480
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EM+YTS+DQP PRGEICVRGP++F+GY+KDE QT++VIDEDGW HTGDIG+W+P GRLKI
Sbjct: 481 EMSYTSDDQPYPRGEICVRGPIVFQGYHKDEAQTRDVIDEDGWLHTGDIGLWLPEGRLKI 540
Query: 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600
IDRKKNIFKLAQGEYIA EKIENVYAKC+F+ QCFVYGDS NSALVAIV+VDQD LKAWA
Sbjct: 541 IDRKKNIFKLAQGEYIAPEKIENVYAKCRFIAQCFVYGDSLNSALVAIVAVDQDTLKAWA 600
Query: 601 ASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLT 660
ASEGI+YENL QLCNDPRARAAVLADMD++GREA+LRGFEF KAVTLVLEPFT+ENGLLT
Sbjct: 601 ASEGIKYENLGQLCNDPRARAAVLADMDAVGREAKLRGFEFAKAVTLVLEPFTMENGLLT 660
Query: 661 PTFKIKRPQAKQYFAKAIADMYAELSRSDPSPN 693
PTFKIKRPQAK YF I+ MY EL+ SDPSP
Sbjct: 661 PTFKIKRPQAKAYFQNTISKMYEELATSDPSPK 693
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432604|ref|XP_002277936.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Vitis vinifera] gi|297737021|emb|CBI26222.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1233 bits (3191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/693 (83%), Positives = 640/693 (92%), Gaps = 2/693 (0%)
Query: 4 TAAQRRLKAIHGHLLC--ADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRS 61
+A QRRL AI L+ DD S SQL N TAGE+ EQGYSVVLPEKL+TGKWNVYRS
Sbjct: 3 SAPQRRLTAIQTQLIATAGDDRSHSQLLTNQTAGEFVSEQGYSVVLPEKLETGKWNVYRS 62
Query: 62 SRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGT 121
++SPL+LVSRFPDHPEIGT HDNFV +V+TFRDYKYLGTR+RVDGTVGEYKWMTYGEAGT
Sbjct: 63 AQSPLRLVSRFPDHPEIGTLHDNFVHSVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGT 122
Query: 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV 181
AR+ +GSGLIY+GI KGSC+GLYF+NRPEWLIVDHACSA+S++SVPLYDTLGPDAVKYIV
Sbjct: 123 ARSAIGSGLIYYGIPKGSCVGLYFINRPEWLIVDHACSAFSYVSVPLYDTLGPDAVKYIV 182
Query: 182 NHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLS 241
NHA +QA+FCVPQTLNSLLS LSE+P+VRLIVV+GGIDDQ+PSLP TTGV++++YS LL+
Sbjct: 183 NHAVLQAIFCVPQTLNSLLSFLSEIPSVRLIVVVGGIDDQMPSLPSTTGVEVVSYSKLLN 242
Query: 242 QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYI 301
QGRS QPF PPKPDDVATICYTSGTTGTPKGAVLSHGNLIA+VAGATL KFYPSDVYI
Sbjct: 243 QGRSRPQPFCPPKPDDVATICYTSGTTGTPKGAVLSHGNLIANVAGATLSVKFYPSDVYI 302
Query: 302 SYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGI 361
SYLPLAHIYERANQVMT Y GVAVGFYQGDN+KLMDDMAALRPT+FCSVPRLYNRIYAGI
Sbjct: 303 SYLPLAHIYERANQVMTAYFGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAGI 362
Query: 362 TSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS 421
T+AV+TSG LRERLFNAAYNAKK+A+LSGKNPSPMWDRLVFNKIK+KLGGRVRFM SGAS
Sbjct: 363 TNAVKTSGVLRERLFNAAYNAKKRAILSGKNPSPMWDRLVFNKIKEKLGGRVRFMVSGAS 422
Query: 422 PLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
PLSPDV++FL+ICFGGR+TEGYGMTETSC+IS +DE DNL+GHVGSPN ACE+KLVDVPE
Sbjct: 423 PLSPDVMEFLRICFGGRITEGYGMTETSCVISSMDESDNLTGHVGSPNPACEVKLVDVPE 482
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNYTSEDQP PRGEICVRGP++F GY+KDE+QT+EVIDEDGW HTGDIG+W+PGGRLKII
Sbjct: 483 MNYTSEDQPYPRGEICVRGPILFLGYHKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKII 542
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601
DRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDS NS+LVAIVSVD D LKAWAA
Sbjct: 543 DRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSMNSSLVAIVSVDPDVLKAWAA 602
Query: 602 SEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTP 661
SEGIQY++L QLCNDPR RAAVLADMD +GREA+LRGFEF KAVTLVLEPFT++N LLTP
Sbjct: 603 SEGIQYQDLGQLCNDPRVRAAVLADMDVVGREAKLRGFEFAKAVTLVLEPFTMDNDLLTP 662
Query: 662 TFKIKRPQAKQYFAKAIADMYAELSRSDPSPNT 694
TFKIKRPQAK YFA AI++MYAELS SDPSP +
Sbjct: 663 TFKIKRPQAKAYFANAISNMYAELSTSDPSPQS 695
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574400|ref|XP_003555336.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1226 bits (3171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/698 (82%), Positives = 640/698 (91%), Gaps = 3/698 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCAD--DSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWN 57
MD T AAQRRLKAIH HL D S S L N TAGE+ EQGYSVVLPEKL TGKWN
Sbjct: 1 MDHTPAAQRRLKAIHAHLTATATADDSPSHLESNTTAGEFFSEQGYSVVLPEKLQTGKWN 60
Query: 58 VYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG 117
VYRS RSPL+LV++FP+HPEIGT HDNFVR+VDTFRDYKYLGTRVRVDGTVGEYKWMTYG
Sbjct: 61 VYRSVRSPLQLVTKFPNHPEIGTMHDNFVRSVDTFRDYKYLGTRVRVDGTVGEYKWMTYG 120
Query: 118 EAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAV 177
EAGTAR+ +GSGLIY+GI KGS IGLYF+NRPEWLIVDHACSAYSF+SVPLYDTLGPDAV
Sbjct: 121 EAGTARSAIGSGLIYYGIQKGSSIGLYFINRPEWLIVDHACSAYSFVSVPLYDTLGPDAV 180
Query: 178 KYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237
KYIV+HA VQ +FCVP+TLN LLS LS++PTVRLIVV+GG+DDQIPS+P +TGVQ++TYS
Sbjct: 181 KYIVSHAVVQVIFCVPETLNLLLSYLSDIPTVRLIVVVGGMDDQIPSVPSSTGVQVITYS 240
Query: 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS 297
LL+QGRSNLQPF PPKPDD+ATICYTSGTTGTPKGA+L+HGN IASVAG+T+ KF PS
Sbjct: 241 KLLNQGRSNLQPFCPPKPDDIATICYTSGTTGTPKGAILTHGNFIASVAGSTMDEKFGPS 300
Query: 298 DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRI 357
DVYISYLPLAHIYERANQVMTV+ G+AVGFYQGD+MKLMDD+AALRPTVFCSVPRLYNRI
Sbjct: 301 DVYISYLPLAHIYERANQVMTVHFGIAVGFYQGDSMKLMDDIAALRPTVFCSVPRLYNRI 360
Query: 358 YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMG 417
YAGIT+AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVRFM
Sbjct: 361 YAGITNAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRFMA 420
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLV 477
SGASPLSPD+++FLKICFG RVTEGYGMTE++C+IS +DEGD L GHVGSPN ACEIKLV
Sbjct: 421 SGASPLSPDIMEFLKICFGCRVTEGYGMTESTCVISCIDEGDKLGGHVGSPNLACEIKLV 480
Query: 478 DVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGR 537
DVPEMNYTS+DQP PRGEICVRGPL+F+GY+KDE QT++VIDEDGW HTGDIG W+PGGR
Sbjct: 481 DVPEMNYTSDDQPNPRGEICVRGPLVFRGYHKDEAQTRDVIDEDGWLHTGDIGTWLPGGR 540
Query: 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALK 597
LKIIDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDS N++LVA+VSVD D LK
Sbjct: 541 LKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNASLVAVVSVDHDNLK 600
Query: 598 AWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENG 657
AWAASEGI Y +L QLCNDP+ARAAVLA+MD+ GREAQLRGFEFVKAVTLVLEPFT+ENG
Sbjct: 601 AWAASEGIMYNDLAQLCNDPKARAAVLAEMDAAGREAQLRGFEFVKAVTLVLEPFTLENG 660
Query: 658 LLTPTFKIKRPQAKQYFAKAIADMYAELSRSDPSPNTL 695
LLTPTFK+KRPQAK+YFAKAI+DMY+ELSR+D S TL
Sbjct: 661 LLTPTFKVKRPQAKEYFAKAISDMYSELSRTDTSQKTL 698
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534226|ref|XP_003535658.1| PREDICTED: long chain acyl-CoA synthetase 6, peroxisomal-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1221 bits (3159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/696 (82%), Positives = 636/696 (91%), Gaps = 1/696 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVY 59
MD T AAQRRLKAIH HL D S S LR NPTAGE+ EQGYSVVLPEKL TGKWNVY
Sbjct: 1 MDHTPAAQRRLKAIHAHLTATADESPSHLRSNPTAGEFFSEQGYSVVLPEKLQTGKWNVY 60
Query: 60 RSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119
RS RSPL+LV++FP+HPEIGT HDNFVR+VDTFRDYKYLGTRVRVDGTVGEYKW+TYGEA
Sbjct: 61 RSVRSPLQLVTKFPNHPEIGTLHDNFVRSVDTFRDYKYLGTRVRVDGTVGEYKWITYGEA 120
Query: 120 GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKY 179
GTAR+ +GSGLIYHGI KGS IGLYF+NRPEWLIVDHACS+YSF+SVPLYDTLGPDAVKY
Sbjct: 121 GTARSAIGSGLIYHGIEKGSSIGLYFINRPEWLIVDHACSSYSFVSVPLYDTLGPDAVKY 180
Query: 180 IVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
IV+HA+VQ +FCVPQTLN LLS LS++PTVRLIVV+GG+DDQIP +P +TGVQ++TYS L
Sbjct: 181 IVSHAAVQVIFCVPQTLNLLLSYLSDIPTVRLIVVVGGMDDQIPLVPSSTGVQVITYSKL 240
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
L+QGRSNLQ F PPKPDD+ATICYTSGTTGTPKGA+L+HGN IASVAG+T KF PSDV
Sbjct: 241 LNQGRSNLQLFCPPKPDDIATICYTSGTTGTPKGAILTHGNFIASVAGSTRDQKFGPSDV 300
Query: 300 YISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359
YISYLPLAHIYERANQVMTV+ G+AVGFYQGD+MKLMDD+AALRPTVFCSVPRLYNRIYA
Sbjct: 301 YISYLPLAHIYERANQVMTVHFGIAVGFYQGDSMKLMDDIAALRPTVFCSVPRLYNRIYA 360
Query: 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSG 419
GI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVRFM SG
Sbjct: 361 GIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRFMASG 420
Query: 420 ASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDV 479
ASPLSPD+++FLKICFG RVTEGYGMTE++C+IS +DEGD L GHVGSPN ACEIKLVDV
Sbjct: 421 ASPLSPDIMEFLKICFGCRVTEGYGMTESTCIISFIDEGDKLGGHVGSPNLACEIKLVDV 480
Query: 480 PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539
PEMNYTS+DQP PRGEICVRGP++F+GY+KDE QT++VIDEDGW HTGDIG W+PGGRLK
Sbjct: 481 PEMNYTSDDQPNPRGEICVRGPIVFRGYHKDEAQTRDVIDEDGWLHTGDIGTWLPGGRLK 540
Query: 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAW 599
IIDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDS NS+LVA+VSVD D LKAW
Sbjct: 541 IIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVSVDHDNLKAW 600
Query: 600 AASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLL 659
AASEGI Y +L QLCND + RAAVLA+MD+ GR+AQLRGFEFVKAVTLVLEPFT+ENGLL
Sbjct: 601 AASEGIMYNDLAQLCNDSKVRAAVLAEMDAAGRDAQLRGFEFVKAVTLVLEPFTLENGLL 660
Query: 660 TPTFKIKRPQAKQYFAKAIADMYAELSRSDPSPNTL 695
TPTFK+KRPQAK+YFAKAI+DMY ELSR+D S TL
Sbjct: 661 TPTFKVKRPQAKEYFAKAISDMYNELSRTDVSQKTL 696
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111218|ref|XP_002315784.1| predicted protein [Populus trichocarpa] gi|222864824|gb|EEF01955.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1212 bits (3135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/690 (81%), Positives = 632/690 (91%), Gaps = 4/690 (0%)
Query: 6 AQRRLKAIHGHLL--CADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSR 63
AQRR+KAIH HL+ A D S QLRHNPTAGE+ EQGYSVVLPEKL TGKWNVYRS+R
Sbjct: 11 AQRRIKAIHSHLITAAAHDDSPPQLRHNPTAGEFFSEQGYSVVLPEKLQTGKWNVYRSAR 70
Query: 64 SPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTAR 123
+PLKLVSRFPDHPEIGT HDNF R+V+TFRDYKYLGTR+RVDGTVG+YKWMT+GEAGTAR
Sbjct: 71 TPLKLVSRFPDHPEIGTLHDNFARSVETFRDYKYLGTRIRVDGTVGDYKWMTFGEAGTAR 130
Query: 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNH 183
TE+GSGLIYHGI KGS IG+YF+NRPEW+IVDHACSAYS+ISVPLYDTLGPDAVKYIVNH
Sbjct: 131 TEIGSGLIYHGIPKGSTIGIYFINRPEWMIVDHACSAYSYISVPLYDTLGPDAVKYIVNH 190
Query: 184 ASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQG 243
A V A+FCVPQTLN LLS LSE+P+ RLIVV+GGIDDQ+PSLP +TGVQ++TYS LLSQG
Sbjct: 191 AVVHAIFCVPQTLNMLLSFLSEIPSARLIVVVGGIDDQMPSLPSSTGVQVVTYSKLLSQG 250
Query: 244 RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303
RS+LQPF PPKP+D+ATICYTSGTTGTPKG VL+HGN IASVAG +L T + SD++ISY
Sbjct: 251 RSSLQPFHPPKPEDIATICYTSGTTGTPKGVVLTHGNFIASVAGISLSTSYSTSDIFISY 310
Query: 304 LPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITS 363
LPLAHIYER NQVMTVY GVAVGFYQGDNMKLMDDMAALRPT+FCSVPRLYNRIYAGI +
Sbjct: 311 LPLAHIYERVNQVMTVYCGVAVGFYQGDNMKLMDDMAALRPTIFCSVPRLYNRIYAGIMN 370
Query: 364 AVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
AV+ SGGLRERLFNAAYNAKKQA+L+GKNPSPMWDRLVFNKIKD+LGGRVR + SGASPL
Sbjct: 371 AVKASGGLRERLFNAAYNAKKQALLNGKNPSPMWDRLVFNKIKDRLGGRVRLIVSGASPL 430
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN 483
SPDVL+FL+ICFGGR+ EGYGMTET+ IS +DEGD+L+GHVGSP+ +CE+KLVDVPEMN
Sbjct: 431 SPDVLEFLRICFGGRIIEGYGMTETTSPISSMDEGDSLNGHVGSPSPSCEVKLVDVPEMN 490
Query: 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
YTS+D+P PRGEIC+RGP++F+GYYKDE QT+EVI+EDGWFH+GDIG+W+PGGRLKIIDR
Sbjct: 491 YTSDDKPYPRGEICIRGPIVFQGYYKDEEQTREVINEDGWFHSGDIGLWLPGGRLKIIDR 550
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603
KKNIFKLAQGEYIA EKIENVYAKCKF+ QCFVYGDS NS+LVA+VSVD D LKAWAASE
Sbjct: 551 KKNIFKLAQGEYIAPEKIENVYAKCKFIAQCFVYGDSLNSSLVAVVSVDHDVLKAWAASE 610
Query: 604 GIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTF 663
G +YENL QLCNDPR RAA+LADMD++GREAQLRGFEFVKAVTLVLE FTVEN LLTPTF
Sbjct: 611 GNKYENLAQLCNDPRVRAAILADMDAVGREAQLRGFEFVKAVTLVLEQFTVENDLLTPTF 670
Query: 664 K--IKRPQAKQYFAKAIADMYAELSRSDPS 691
K IKRPQAK Y+ KAI++MYAEL+ SDPS
Sbjct: 671 KATIKRPQAKAYYEKAISNMYAELAASDPS 700
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432710|ref|XP_004134142.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1197 bits (3098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/695 (80%), Positives = 629/695 (90%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
MDS+AA+RR++AI HL+ A + SSSQL+ N TAGE+ GYSVVLPEKL TGKWNVYR
Sbjct: 1 MDSSAARRRIQAIQDHLVPASEFSSSQLQLNATAGEFFSGDGYSVVLPEKLQTGKWNVYR 60
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S+RSPLKLV RFPDHPEIGT HDNF R+ D +RDYKYLGTR+R DGTVGEYKWMTYGEAG
Sbjct: 61 SARSPLKLVDRFPDHPEIGTLHDNFTRSTDVYRDYKYLGTRIRCDGTVGEYKWMTYGEAG 120
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
TART +GSGL+ HGI KGSCIGLYF+NRPEWL+VDHACSAYS+ISVPLYDTLGPDAVKYI
Sbjct: 121 TARTALGSGLVNHGIPKGSCIGLYFINRPEWLVVDHACSAYSYISVPLYDTLGPDAVKYI 180
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQ +FCVPQTLNSLLS LSE+PTVRLIVV+GG+DDQIPSLP +TGVQ+LTY++LL
Sbjct: 181 VNHALVQVIFCVPQTLNSLLSFLSEIPTVRLIVVVGGVDDQIPSLPSSTGVQVLTYASLL 240
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG +N+QPF PPK DD+ATICYTSGTTGTPKGAVL+HGNLIASVAG +L KF+PSDVY
Sbjct: 241 SQGSTNIQPFCPPKSDDIATICYTSGTTGTPKGAVLTHGNLIASVAGCSLALKFFPSDVY 300
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV TVY GVAVGFYQGDNMKLMDDM ALRPT+FCSVPRLYNRIYAG
Sbjct: 301 ISYLPLAHIYERANQVSTVYFGVAVGFYQGDNMKLMDDMIALRPTIFCSVPRLYNRIYAG 360
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
I +AV+TSG L+ERLFNAAYN+K+QA+++GK+PSP+WD+LVFNKIK KLGGRVR + SGA
Sbjct: 361 IINAVKTSGVLKERLFNAAYNSKRQAIMNGKSPSPLWDKLVFNKIKAKLGGRVRVLASGA 420
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPD+L+FLKICFGG V EGYGMTETSC+IS +D D L GHVG+PN ACEIKLVDVP
Sbjct: 421 SPLSPDILEFLKICFGGVVFEGYGMTETSCVISAMDPDDTLCGHVGAPNPACEIKLVDVP 480
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EMNYTS+DQP RGEICVRGPL+FKGY+KDE+QT+E +DEDGW HTGDIG+W+ GGRLKI
Sbjct: 481 EMNYTSDDQPYSRGEICVRGPLVFKGYFKDEVQTREAVDEDGWLHTGDIGLWMQGGRLKI 540
Query: 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600
IDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDSFN++LVA+VSVD + LKAWA
Sbjct: 541 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSFNASLVAVVSVDVETLKAWA 600
Query: 601 ASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLT 660
+SEGI+Y +L QLCNDPRARAAVLADMD++GREAQLRGFEF KAVTLV EPFT+ENGLLT
Sbjct: 601 SSEGIKYNDLAQLCNDPRARAAVLADMDAVGREAQLRGFEFAKAVTLVHEPFTLENGLLT 660
Query: 661 PTFKIKRPQAKQYFAKAIADMYAELSRSDPSPNTL 695
PTFKIKRPQAK+YFA AI++MYAEL+ SD S +
Sbjct: 661 PTFKIKRPQAKEYFANAISNMYAELASSDSSSQKM 695
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444293|ref|XP_003592424.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355481472|gb|AES62675.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1184 bits (3063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/697 (81%), Positives = 632/697 (90%), Gaps = 2/697 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCA-DDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNV 58
MD T AQRRLKAI+ HL+ A +D+SS L+ NPTAGE+ EQGYSVVLPEKL TGKWNV
Sbjct: 1 MDPTPTAQRRLKAINAHLITAVEDNSSDHLQSNPTAGEFFSEQGYSVVLPEKLQTGKWNV 60
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSPLKL++RFPDHPE+GT HDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG+
Sbjct: 61 YRSVRSPLKLMNRFPDHPEVGTLHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGK 120
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
AGTAR+ +GSGLI++GI KG+ IGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK
Sbjct: 121 AGTARSAIGSGLIHYGIPKGAGIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVK 180
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
YIVNHA VQ +FCV QTLNSLLS LSE+PTVRLIVV+GGIDDQIPSLP + GVQI++Y+
Sbjct: 181 YIVNHALVQVIFCVSQTLNSLLSYLSEIPTVRLIVVVGGIDDQIPSLPSSDGVQIISYTK 240
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
L SQGRSNLQPF PPKP+DVATICYTSGTTGTPKGAVL+H N IA+VAGAT+ KF PSD
Sbjct: 241 LFSQGRSNLQPFCPPKPEDVATICYTSGTTGTPKGAVLTHENFIANVAGATIDEKFNPSD 300
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQVMTVY G+AVGFYQGDN+KLMDD+AALRPTVFCSVPRLYNRIY
Sbjct: 301 VYISYLPLAHIYERANQVMTVYFGMAVGFYQGDNLKLMDDLAALRPTVFCSVPRLYNRIY 360
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
AGI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVR M S
Sbjct: 361 AGIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRLMVS 420
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV++FLKICFGGRVTEGYGMTET+C+IS +D GD L GHVGSPN ACEIKLVD
Sbjct: 421 GASPLSPDVMEFLKICFGGRVTEGYGMTETTCVISCIDNGDRLGGHVGSPNPACEIKLVD 480
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IF+GYYKDE QT+EVIDE+GW HTGDIG WI GGRL
Sbjct: 481 VPEMNYTSDDQPNPRGEICVRGPIIFQGYYKDEAQTREVIDEEGWLHTGDIGTWIAGGRL 540
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKA 598
KIIDRKKNIFKLAQGEYIA EKIENVY KC FV QCF+YGDSFNS+LV++VSVD D +KA
Sbjct: 541 KIIDRKKNIFKLAQGEYIAPEKIENVYVKCNFVAQCFIYGDSFNSSLVSVVSVDPDVMKA 600
Query: 599 WAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGL 658
WAAS+ I Y +L QLCNDPRA+AAVLA+MD++GREAQLRGFEF KAV LV EPF +ENGL
Sbjct: 601 WAASQNIVYNDLTQLCNDPRAKAAVLAEMDAVGREAQLRGFEFAKAVFLVAEPFAMENGL 660
Query: 659 LTPTFKIKRPQAKQYFAKAIADMYAELSRSDPSPNTL 695
LTPT KIKRPQAK+YF KAI+DMY+ELS+SDPS L
Sbjct: 661 LTPTMKIKRPQAKEYFGKAISDMYSELSKSDPSQKPL 697
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444291|ref|XP_003592423.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355481471|gb|AES62674.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/713 (79%), Positives = 632/713 (88%), Gaps = 18/713 (2%)
Query: 1 MDST-AAQRRLKAIHGHLLCA-DDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNV 58
MD T AQRRLKAI+ HL+ A +D+SS L+ NPTAGE+ EQGYSVVLPEKL TGKWNV
Sbjct: 1 MDPTPTAQRRLKAINAHLITAVEDNSSDHLQSNPTAGEFFSEQGYSVVLPEKLQTGKWNV 60
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSPLKL++RFPDHPE+GT HDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG+
Sbjct: 61 YRSVRSPLKLMNRFPDHPEVGTLHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGK 120
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
AGTAR+ +GSGLI++GI KG+ IGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK
Sbjct: 121 AGTARSAIGSGLIHYGIPKGAGIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVK 180
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
YIVNHA VQ +FCV QTLNSLLS LSE+PTVRLIVV+GGIDDQIPSLP + GVQI++Y+
Sbjct: 181 YIVNHALVQVIFCVSQTLNSLLSYLSEIPTVRLIVVVGGIDDQIPSLPSSDGVQIISYTK 240
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
L SQGRSNLQPF PPKP+DVATICYTSGTTGTPKGAVL+H N IA+VAGAT+ KF PSD
Sbjct: 241 LFSQGRSNLQPFCPPKPEDVATICYTSGTTGTPKGAVLTHENFIANVAGATIDEKFNPSD 300
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQVMTVY G+AVGFYQGDN+KLMDD+AALRPTVFCSVPRLYNRIY
Sbjct: 301 VYISYLPLAHIYERANQVMTVYFGMAVGFYQGDNLKLMDDLAALRPTVFCSVPRLYNRIY 360
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
AGI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVR M S
Sbjct: 361 AGIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRLMVS 420
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV++FLKICFGGRVTEGYGMTET+C+IS +D GD L GHVGSPN ACEIKLVD
Sbjct: 421 GASPLSPDVMEFLKICFGGRVTEGYGMTETTCVISCIDNGDRLGGHVGSPNPACEIKLVD 480
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IF+GYYKDE QT+EVIDE+GW HTGDIG WI GGRL
Sbjct: 481 VPEMNYTSDDQPNPRGEICVRGPIIFQGYYKDEAQTREVIDEEGWLHTGDIGTWIAGGRL 540
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG----------------DSFN 582
KIIDRKKNIFKLAQGEYIA EKIENVY KC FV QCF+YG DSFN
Sbjct: 541 KIIDRKKNIFKLAQGEYIAPEKIENVYVKCNFVAQCFIYGKERNSAYIFSVCVFRRDSFN 600
Query: 583 SALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFV 642
S+LV++VSVD D +KAWAAS+ I Y +L QLCNDPRA+AAVLA+MD++GREAQLRGFEF
Sbjct: 601 SSLVSVVSVDPDVMKAWAASQNIVYNDLTQLCNDPRAKAAVLAEMDAVGREAQLRGFEFA 660
Query: 643 KAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAELSRSDPSPNTL 695
KAV LV EPF +ENGLLTPT KIKRPQAK+YF KAI+DMY+ELS+SDPS L
Sbjct: 661 KAVFLVAEPFAMENGLLTPTMKIKRPQAKEYFGKAISDMYSELSKSDPSQKPL 713
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147863228|emb|CAN82622.1| hypothetical protein VITISV_002313 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/703 (75%), Positives = 614/703 (87%), Gaps = 9/703 (1%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
M+STA QRRLKAI GHL+ S ++ + TA E+ QGYSVVLPEKL+TGKWNVYR
Sbjct: 1 MESTA-QRRLKAIQGHLVPITHVLDSHVQTSTTASEFFHTQGYSVVLPEKLNTGKWNVYR 59
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S RSPLKL+SR P+HPEIGT HDNF+ A++ F+DY YLGTRVR DGTVGEYKWMTYGEAG
Sbjct: 60 SVRSPLKLISRLPEHPEIGTLHDNFMHAIEAFKDYNYLGTRVRGDGTVGEYKWMTYGEAG 119
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
T R +GSGL +HG+ +G+CIGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVKYI
Sbjct: 120 TVRLAIGSGLRHHGLLEGACIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYI 179
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQA+FC+P TLN+LLS LSE+P+VRL+VV+GGID+ +PSLP + V++++++ LL
Sbjct: 180 VNHADVQAIFCLPHTLNTLLSFLSEIPSVRLVVVVGGIDEHVPSLPSNSQVKLISFAKLL 239
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG S+LQPF PPKP+D+ATICYTSGTTGTPKG +L+HGNLIA++AGA+L KF PSD+Y
Sbjct: 240 SQGHSDLQPFCPPKPEDIATICYTSGTTGTPKGVILTHGNLIATIAGASLTLKFCPSDIY 299
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV+ Y G AVGFYQGDN+KLMDD+AALRPT+FCSVPRLYNRIY+G
Sbjct: 300 ISYLPLAHIYERANQVLLPYYGGAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYSG 359
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
I +AV+TSG LR+ LFNAAYN+KKQ ++SG+NPSPMWDRLVF+KIK LGGRV FMGSGA
Sbjct: 360 IMNAVQTSGVLRKTLFNAAYNSKKQVIISGRNPSPMWDRLVFSKIKGMLGGRVHFMGSGA 419
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPDV+DFL++CFG +V EGYGMTETSCLIS +D+GDNLSGHVGSPN ACEIKLVDVP
Sbjct: 420 SPLSPDVMDFLRVCFGCQVIEGYGMTETSCLISCMDKGDNLSGHVGSPNPACEIKLVDVP 479
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EMNYTSEDQP PRGEICVRGP++F+GYYKDE+QTKEVID DGW HTGDIG+W+PGGRLKI
Sbjct: 480 EMNYTSEDQPYPRGEICVRGPVLFQGYYKDEVQTKEVIDGDGWLHTGDIGLWLPGGRLKI 539
Query: 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600
IDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCF+YGDS NS LVAIVSVD D LK WA
Sbjct: 540 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVSQCFIYGDSLNSCLVAIVSVDPDVLKDWA 599
Query: 601 ASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLT 660
SE I+YENL LCNDPRARAAVL +MD++GREAQLRGFEF K+VTLV+EPFT+EN LLT
Sbjct: 600 TSEAIKYENLGHLCNDPRARAAVLTEMDAIGREAQLRGFEFAKSVTLVVEPFTMENDLLT 659
Query: 661 PTFK--------IKRPQAKQYFAKAIADMYAELSRSDPSPNTL 695
PTFK IKRPQAK YF+ I++MYAE+S SD +P +
Sbjct: 660 PTFKASFIILQMIKRPQAKAYFSAPISNMYAEISTSDTNPQKM 702
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123160|ref|XP_002319009.1| predicted protein [Populus trichocarpa] gi|222857385|gb|EEE94932.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1135 bits (2935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/696 (74%), Positives = 615/696 (88%), Gaps = 2/696 (0%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAG-EYALEQGYSVVLPEKLDTGKWNVY 59
MDS AQRRLK+I H+L + + S L+ N T+ ++ Q YSV LPEKL TGKWNVY
Sbjct: 1 MDS-PAQRRLKSIQSHVLSSTTADQSDLQANLTSSSQFVHRQQYSVCLPEKLQTGKWNVY 59
Query: 60 RSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119
RS+RSP+K+V+RF DHPEI T HDNFV AV TF DYKYLGTRV+ DG +GEY WMTYGEA
Sbjct: 60 RSARSPMKIVTRFHDHPEIETLHDNFVHAVKTFGDYKYLGTRVQADGMIGEYTWMTYGEA 119
Query: 120 GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKY 179
G AR +GS L +HG+ KG+CIGLYF+NRPEWLIVDHAC+AYS+ISVPLYDTLGPDAVKY
Sbjct: 120 GAAREAIGSALRFHGLQKGACIGLYFINRPEWLIVDHACTAYSYISVPLYDTLGPDAVKY 179
Query: 180 IVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
+VNHA VQA+FCVP+TLN+LLS +SE+P+VRLIVV+GG+D+ +PSLP+ +GV++ +Y+ L
Sbjct: 180 VVNHADVQAIFCVPETLNTLLSFISEIPSVRLIVVVGGVDEHLPSLPLASGVKLRSYTKL 239
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
S+GRS+LQPF PPKP+DVATICYTSGTTGTPKG VL+H NLI+SVAG + KF P+D+
Sbjct: 240 FSEGRSSLQPFIPPKPEDVATICYTSGTTGTPKGVVLTHNNLISSVAGFCMAIKFNPADI 299
Query: 300 YISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359
YISYLPLAHIYER+NQ+++VY GVAVGFYQGDN+KL+DD++ALRPT+ CSVPRLYNRIY
Sbjct: 300 YISYLPLAHIYERSNQIVSVYYGVAVGFYQGDNLKLLDDLSALRPTILCSVPRLYNRIYD 359
Query: 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSG 419
GI +AV++SG L+ERLF AAYN+KKQA++SG+NPSPMWDRLVFNKIK+KLGGRVRFMGSG
Sbjct: 360 GIINAVKSSGVLKERLFRAAYNSKKQALMSGRNPSPMWDRLVFNKIKEKLGGRVRFMGSG 419
Query: 420 ASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDV 479
ASPLSPDV+DFL++CFG +V EGYGMTETSC+IS +D+GDNLSGHVGSPN ACEIKLVDV
Sbjct: 420 ASPLSPDVMDFLRVCFGCQVLEGYGMTETSCVISSVDQGDNLSGHVGSPNPACEIKLVDV 479
Query: 480 PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539
PEMNYTSEDQP PRGEICVRGP IF+GYYK E+Q +EVID+DGW HTGDIG+W+PGGRLK
Sbjct: 480 PEMNYTSEDQPHPRGEICVRGPTIFQGYYKAEVQMREVIDDDGWLHTGDIGLWLPGGRLK 539
Query: 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAW 599
IIDRKKNIFKLAQGEYIA EK+ENVY KC+FV QCF+YGDSFNS+LVA+V+V+ D L+ W
Sbjct: 540 IIDRKKNIFKLAQGEYIAPEKVENVYTKCRFVSQCFIYGDSFNSSLVAVVAVEPDVLRDW 599
Query: 600 AASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLL 659
A SEGI++++L QLCNDPRARAAVLADMD +G+EAQLRGFEF KAVTLV EPFT+ENGLL
Sbjct: 600 AVSEGIKHDDLGQLCNDPRARAAVLADMDLVGKEAQLRGFEFAKAVTLVPEPFTMENGLL 659
Query: 660 TPTFKIKRPQAKQYFAKAIADMYAELSRSDPSPNTL 695
TPTFK+KRPQAK+YFAKAI++MYA LS SDP P L
Sbjct: 660 TPTFKVKRPQAKEYFAKAISNMYAALSASDPKPPKL 695
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 695 | ||||||
| TAIR|locus:2083013 | 701 | LACS6 "AT3G05970" [Arabidopsis | 0.992 | 0.984 | 0.791 | 2.2e-311 | |
| TAIR|locus:2143661 | 700 | LACS7 "AT5G27600" [Arabidopsis | 0.991 | 0.984 | 0.746 | 2.2e-295 | |
| DICTYBASE|DDB_G0269242 | 667 | fcsA "long-chain-fatty-acid-Co | 0.905 | 0.943 | 0.419 | 1.1e-133 | |
| UNIPROTKB|F1NNV2 | 683 | ACSL5 "Uncharacterized protein | 0.812 | 0.827 | 0.461 | 4.8e-131 | |
| RGD|69403 | 697 | Acsl6 "acyl-CoA synthetase lon | 0.812 | 0.810 | 0.461 | 5e-131 | |
| ZFIN|ZDB-GENE-040912-169 | 681 | acsl5 "acyl-CoA synthetase lon | 0.817 | 0.834 | 0.459 | 6.4e-131 | |
| UNIPROTKB|E2R463 | 698 | ACSL5 "Uncharacterized protein | 0.863 | 0.859 | 0.430 | 1.3e-130 | |
| UNIPROTKB|F1Q0U3 | 683 | ACSL5 "Uncharacterized protein | 0.863 | 0.878 | 0.430 | 1.3e-130 | |
| ZFIN|ZDB-GENE-040801-88 | 729 | zgc:101071 "zgc:101071" [Danio | 0.818 | 0.780 | 0.443 | 3.5e-130 | |
| UNIPROTKB|E2QUL3 | 698 | ACSL1 "Uncharacterized protein | 0.879 | 0.875 | 0.430 | 5.7e-130 |
| TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2987 (1056.5 bits), Expect = 2.2e-311, P = 2.2e-311
Identities = 547/691 (79%), Positives = 629/691 (91%)
Query: 3 STAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSS 62
S AA+RR+ AIH HL+ + SS LR NPTAGE+ L+ GYSVVLPEKL+TG WNVYRS+
Sbjct: 9 SAAARRRINAIHSHLVTSS-RSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSA 67
Query: 63 RSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTA 122
+SP KLVSRFPDHP+I T HDNF AV FRDYKYLGTRVRVDGTVG+YKWMTYGEAGTA
Sbjct: 68 KSPFKLVSRFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTA 127
Query: 123 RTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN 182
RT +GSGL++HGI GS +G+YF+NRPEWLIVDHACS+YS++SVPLYDTLGPDAVK+IVN
Sbjct: 128 RTALGSGLVHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVN 187
Query: 183 HASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242
HA+VQA+FCV +TLNSLLSCLSE+P+VRL+VV+GG+ + +PSLP ++GV++++YS LL+Q
Sbjct: 188 HATVQAIFCVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQ 247
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
GRSN Q F PPKPDDVATICYTSGTTGTPKG VL+H NLIA+VAG++ KF+ SDVYIS
Sbjct: 248 GRSNPQRFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYIS 307
Query: 303 YLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
YLPLAHIYERANQ++TVY GVAVGFYQGDNMKL+DD+AALRPTVF SVPRLYNRIYAGI
Sbjct: 308 YLPLAHIYERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGII 367
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+AV+TSGGL+ERLFNAAYNAKKQA+L+GK+ SP+WDRLVFNKIKD+LGGRVRFM SGASP
Sbjct: 368 NAVKTSGGLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASP 427
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
LSP+V++FLK+CFGGRVTEGYGMTETSC+IS +DEGDNL+GHVGSPN ACE+KLVDVPEM
Sbjct: 428 LSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEM 487
Query: 483 NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
NYTS DQP PRGEICVRGP+IF GYYKDEIQTKEVIDEDGW HTGDIG+W+PGGRLKIID
Sbjct: 488 NYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIID 547
Query: 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602
RKKNIFKLAQGEYIA EKIENVYAKCKFVGQCF+YGDSFNS+LVA+VSVD D LK+WAAS
Sbjct: 548 RKKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAAS 607
Query: 603 EGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPT 662
EGI+ +L +LCN+PR +AAVL+DMD++GREAQLRGFEF KAVTLVLEPFT+ENGLLTPT
Sbjct: 608 EGIKGGDLRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGLLTPT 667
Query: 663 FKIKRPQAKQYFAKAIADMYAELSRSDPSPN 693
FKIKRPQAK+YFA+AI +MY EL SDPS N
Sbjct: 668 FKIKRPQAKEYFAEAITNMYKELGASDPSAN 698
|
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| TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2836 (1003.4 bits), Expect = 2.2e-295, P = 2.2e-295
Identities = 517/693 (74%), Positives = 604/693 (87%)
Query: 7 QRRLKAIHGHL-LCADDSSSSQLRHNPTAGE---YALEQGYSVVLPEKLDTGKWNVYRSS 62
QRRL+ I H+ + SS L N TA + E YSVVLPEKLDTGKWNVYRS
Sbjct: 8 QRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVYRSK 67
Query: 63 RSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTA 122
RSP KLVSRFPDHPEIGT HDNFV AV+T+ + KYLGTRVR DGT+GEY WMTYGEA +
Sbjct: 68 RSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASE 127
Query: 123 RTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN 182
R +GSGL++HG+++G C+GLYF+NRPEWL+VDHAC+AYSF+SVPLYDTLGPDAVK++VN
Sbjct: 128 RQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVN 187
Query: 183 HASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242
HA++QA+FCVPQTLN LLS L+E+P++RLIVV+GG D+ +PSLP TGV I++Y LLSQ
Sbjct: 188 HANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQ 247
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
GRS+L PFSPPKP+D+ATICYTSGTTGTPKG VL+HGNLIA+VAG+++ +F+PSDVYIS
Sbjct: 248 GRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDVYIS 307
Query: 303 YLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
YLPLAHIYERANQ+M VY GVAVGFYQGD KLMDD A LRPT+FCSVPRLYNRIY GIT
Sbjct: 308 YLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGIT 367
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
SAV++SG +++RLF AYN+KKQA+++G+ PS WD+LVFNKIK+KLGGRVRFMGSGASP
Sbjct: 368 SAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSGASP 427
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
LSPDV+DFL+ICFG V EGYGMTETSC+IS +D+GDNLSGHVGSPN ACE+KLVDVPEM
Sbjct: 428 LSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDVPEM 487
Query: 483 NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
NYTS+DQP PRGEICVRGP+IFKGYYKDE QT+E++D DGW HTGDIG+W+PGGRLKIID
Sbjct: 488 NYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIID 547
Query: 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602
RKKNIFKLAQGEYIA EKIENVY KC+FV QCF++GDSFNS+LVAIVSVD + +K WAAS
Sbjct: 548 RKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAAS 607
Query: 603 EGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPT 662
EGI+YE+L QLCNDPR R VLA+MD LGREAQLRGFEF KAVTLV EPFT+ENGLLTPT
Sbjct: 608 EGIKYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLLTPT 667
Query: 663 FKIKRPQAKQYFAKAIADMYAELSRSDPSPNTL 695
FKIKRPQAK YFA+AI+ MYAE++ S+P P+ L
Sbjct: 668 FKIKRPQAKAYFAEAISKMYAEIAASNPIPSKL 700
|
|
| DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
Identities = 269/642 (41%), Positives = 386/642 (60%)
Query: 54 GKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTR-VRVDGTVGEYK 112
G+ R+++ P KL + PD T +D V ++ D +LG R + DG G+YK
Sbjct: 32 GETRPRRNTKFP-KLTNS-PDGKTF-TLYD--VYRINKDSDSNFLGIRELLADGKRGDYK 86
Query: 113 WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
W++Y +A +GS L+ G++KG IG++ +NRPEW++ D A +S + V LY TL
Sbjct: 87 WISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATL 146
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQ-IPSLPITTGV 231
G +A++Y+VNH+ + + C + + +LS T++ IV + + V
Sbjct: 147 GANAIEYVVNHSEISVLLCEGKNVEKILSMPGT--TIKTIVSYDPLPQATLDKFKDNENV 204
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
++ S+ G N P P+D+ T+ YTSG+TG PKG +L+H N+++ VAGA
Sbjct: 205 KLYLLSDFEKLGEQNPAQHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS 264
Query: 292 TK-FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
P DV++SYLPLAH +ERA + Y G +GF+ G +L +D+ LRPT C
Sbjct: 265 PAGVIPEDVHMSYLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGA 324
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
PR++ R++ + V L++ LFN N+K+ A+ G +P+WD+LVF+K KD+LG
Sbjct: 325 PRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSKQSALRLGST-TPIWDKLVFSKTKDRLG 383
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470
GRV+F+ SG++PL P + +FL+ CF V GYG++E S DN GHVG P +
Sbjct: 384 GRVKFILSGSAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDNNVGHVGPPLS 443
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
ACE+KL+DVPEMNY S D+PCPRGE+C+RG +FKGY+KD +TKE + EDGWFHTGDIG
Sbjct: 444 ACEMKLIDVPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIG 503
Query: 531 MWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVS 590
W G L IIDRKKNIFKL+QGEY+AAE +E+V+ + F Q FVYGDS NS LV +V
Sbjct: 504 RWNENGTLSIIDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVV 563
Query: 591 VDQDALKAWAASE--GIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLV 648
D + ++ AS+ + N L +L+ D+ EA+L GFE +K + +
Sbjct: 564 PDFEVVQKLFASKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVE 623
Query: 649 LEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAELSRSDP 690
EPFT EN LLTP+FK KRPQ K+ + I +YAE R P
Sbjct: 624 HEPFTEENNLLTPSFKPKRPQLKERYQTIIDTLYAEYKRDHP 665
|
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| UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1262 (449.3 bits), Expect = 4.8e-131, Sum P(2) = 4.8e-131
Identities = 272/589 (46%), Positives = 365/589 (61%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W+TY + +GSGL+ G S IG++ NRPEW+I ++AC YS ++VPL
Sbjct: 103 YQWLTYKQVLDRAQHLGSGLLQKGCKPSSDQFIGIFAQNRPEWIISEYACYTYSMVAVPL 162
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLL-SC-LSEVPTVRLIVVIGGIDDQIPSL 225
YDTLGPDA+ YIVN A + V C P+ LL +C + P ++ I+++ D ++
Sbjct: 163 YDTLGPDAILYIVNKADIGIVICDKPEKAQILLENCEQGKTPCLKTIILMDLFDKELKDR 222
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV+IL GR+N++ PP P+D+ +C+TSGTTG PKGA+L+H N++A+
Sbjct: 223 GAKVGVEILALQEAEELGRNNIRKPVPPGPEDLCIVCFTSGTTGNPKGAMLTHENVVANA 282
Query: 286 AGATLGT-----KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMA 340
A A L T + SDV ISYLPLAH++ER Q + G VGF+QGD L DDM
Sbjct: 283 A-AFLRTIEDTVECTTSDVSISYLPLAHMFERVVQTVMYSCGAKVGFFQGDIKLLTDDMK 341
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWD 398
L+PT+F VPRL NRIY I S T +++ L N A K + G +N S + D
Sbjct: 342 TLKPTIFPVVPRLLNRIYDKIQSGANTP--MKKFLLNFAATMKMIEVKQGIIRNDS-LLD 398
Query: 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLD 456
+LVF K+++ +GGRVR M +GA+P+SP VL FL+ G +V E YG TE S C S
Sbjct: 399 KLVFKKVQETMGGRVRIMVTGAAPISPSVLKFLRSALGCQVFEAYGQTECSAGCTFSM-- 456
Query: 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKE 516
GD +GHVG P IKL DV EMNY S + GE+C++GP +FKGY KD +T E
Sbjct: 457 PGDWTTGHVGPPLVCNIIKLDDVEEMNYFSSNN---EGEVCIKGPNVFKGYLKDPEKTAE 513
Query: 517 VIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
ID+DGW HTGD+G W+P G LKIIDRKKNIFKLAQGEYIA EKIENVY + V Q FV
Sbjct: 514 AIDKDGWLHTGDVGKWMPNGTLKIIDRKKNIFKLAQGEYIAPEKIENVYIRSVAVAQVFV 573
Query: 577 YGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQL 636
+G+S S L+ IV D + L +AA GI+ + E +C +P + A+L D+ LG+ A L
Sbjct: 574 HGESLRSCLIGIVVPDAETLPEFAAKLGIK-GSYEDICKNPAVKKAILEDLVRLGKAAGL 632
Query: 637 RGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 685
+ FE VK + + E F+VENGLLTPT K KR + + F K I +Y+ +
Sbjct: 633 KSFEQVKDLYIHTELFSVENGLLTPTLKAKRAELVKVFQKQIEALYSSM 681
|
|
| RGD|69403 Acsl6 "acyl-CoA synthetase long-chain family member 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
Identities = 270/585 (46%), Positives = 369/585 (63%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ IG++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP +++YI+N A + V P LL + E P ++L++++ DD +
Sbjct: 178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N + PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYPS--DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ + P+ DV+ SYLPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTESQWAPTCADVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY TS+ + GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRG 638
DS + LV IV D + + WA +GI+ N ++LC + A+L DM LG+E+ L
Sbjct: 591 DSLKAFLVGIVVPDPEVMPCWAQKKGIE-GNYQELCKSKELKKAILDDMVMLGKESGLHS 649
Query: 639 FEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 683
FE VKA+ + + F+V+NGLLTPT K KRP+ ++YF K I ++Y+
Sbjct: 650 FEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694
|
|
| ZFIN|ZDB-GENE-040912-169 acsl5 "acyl-CoA synthetase long-chain family member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1284 (457.0 bits), Expect = 6.4e-131, P = 6.4e-131
Identities = 269/586 (45%), Positives = 373/586 (63%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W+ Y + +GSGLI+ G S+ + IG++ NRPEW+I + AC YS ++VPL
Sbjct: 103 YQWLKYKQVSDRAEFLGSGLIHRGQKPSQDTFIGIFAQNRPEWIIAELACYTYSMVAVPL 162
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE---VPTVRLIVVIGGIDDQIPSL 225
YDTLGP+A+ +I+N A++ V C + L SE P ++ I+++ D +
Sbjct: 163 YDTLGPEALVFIINRANISTVICDKKDKAETLLDNSEKKLTPLLKTIILMDSYDSALTER 222
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV +L+ ++ + G++N PPKP+D++ IC+TSGTTG PKGA+L+H N++A
Sbjct: 223 GSKIGVDVLSLKDVEALGKNNHHRPVPPKPEDLSIICFTSGTTGDPKGAMLTHENVVADA 282
Query: 286 AGA--TLGTKFYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
AG T + F P SDV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 283 AGVVRTFESVFVPVPSDVSISFLPLAHMFERVVQTVLYGVGGRVGFFQGDIRLLPDDMKA 342
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
L+PTVF VPRL NR+Y + S +T ++ L N A K + G +N S MWD+
Sbjct: 343 LQPTVFPVVPRLLNRVYDKVQSGAKTP--FKKWLLNFAIEKKCAEVKQGIIRNDS-MWDK 399
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L+F+K+++ LGGRVR M +GA+P+SP VL FL+ C G ++ E YG TE + S GD
Sbjct: 400 LIFHKVQESLGGRVRVMVTGAAPISPSVLTFLRACLGCQIFEAYGQTECTAACSFTIPGD 459
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519
+GHVG+P IKLVDV EM+Y + + GEICV+G +F+GY D +T E +D
Sbjct: 460 WKTGHVGAPIPCNTIKLVDVEEMDYFASNG---EGEICVKGTNVFRGYLGDPEKTAEALD 516
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGD 579
+DGW HTGDIG W+P G LKIIDRKKNIFKLAQGEYIA EKIENVY + V Q FV+G+
Sbjct: 517 KDGWLHTGDIGKWLPSGVLKIIDRKKNIFKLAQGEYIAPEKIENVYIRSAPVAQVFVHGE 576
Query: 580 SFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGF 639
S S+LVAIV D + L +A G++ +LE+LC + + A+++D++ LGREA L+ F
Sbjct: 577 SLQSSLVAIVVPDPEVLPGFAEKLGLK-GSLEELCRNQELKKAIISDLNKLGREAGLKSF 635
Query: 640 EFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 685
E VK + L + FT+ENGLLTPT K KR +YF I +YA +
Sbjct: 636 EQVKDLYLHPDMFTIENGLLTPTLKAKRADLTKYFRVQIESLYANM 681
|
|
| UNIPROTKB|E2R463 ACSL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
Identities = 268/622 (43%), Positives = 386/622 (62%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + + LG R YKW++Y + +GS L++ G
Sbjct: 88 YSDVKTMYDVFQRGLAVSDNGPCLGYRKPNQ----PYKWLSYRQVSDRAEYLGSCLLHKG 143
Query: 135 ISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S +G++ NRPEW+I + AC YS ++VPLYDTLG +A+ YIVN A + AV C
Sbjct: 144 YEPSSDQSVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGAEAIIYIVNKADIAAVICD 203
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
PQ ++L+ + + P +++I+++ +D + G++IL+ + G+ N +
Sbjct: 204 TPQKASTLIENMEKGLTPGLKMIILMDPFEDDLKERAEKCGIEILSLFDAEILGKENFRK 263
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY----PSDVYISYLP 305
PP+P+D++ IC+TSGTTG PKGA+L+H N+I++V+ ++ P DV ISYLP
Sbjct: 264 PVPPRPEDLSIICFTSGTTGDPKGAMLTHQNIISNVSSFLKCMEYTFKPTPEDVTISYLP 323
Query: 306 LAHIYERANQVMTVYS-GVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364
LAH++ER Q + +YS G VGF+QGD L +D+ L+PT+F SVPRL NRIY + +
Sbjct: 324 LAHMFERIVQAV-IYSCGARVGFFQGDIRLLPEDLKTLKPTLFPSVPRLLNRIYDKVQNE 382
Query: 365 VRTSGGLRERLFNAAYNAKKQAMLSGK-NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
+T L++ L N A + K + G +WD+L+F KI+ LGGR+ F+ +GA+P+
Sbjct: 383 AKTP--LKKFLLNLAISCKFNEVKKGIIRRDSIWDKLIFAKIQATLGGRINFVVTGAAPI 440
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN 483
S VL FL+ G V E YG TE + + GD SGHVG P A +KL DVP+MN
Sbjct: 441 SSPVLMFLRAALGCPVFEAYGQTECTAGCTFTSPGDWTSGHVGVPLACNHVKLEDVPDMN 500
Query: 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
Y S + GEIC++G +FKGY KD +TKE +DEDGW HTGDIG W+P G LKIIDR
Sbjct: 501 YFSVNN---EGEICIKGSNVFKGYLKDPEKTKEALDEDGWLHTGDIGRWLPNGTLKIIDR 557
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603
KKNIFKLAQGEYIA EKIEN+Y + + V Q FV+GDS S+LV +V D + L ++ A
Sbjct: 558 KKNIFKLAQGEYIAPEKIENIYIRSRPVSQIFVHGDSLRSSLVGVVVPDPEVLPSFVAKL 617
Query: 604 GIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTF 663
G++ +LE+LC + R A+L D+ +G++ L+ FE VK + L LEPF++ENGLLTPT
Sbjct: 618 GVK-GSLEELCKNNNVREAILEDLQKVGKDGGLKSFEQVKNIFLQLEPFSIENGLLTPTL 676
Query: 664 KIKRPQAKQYFAKAIADMYAEL 685
K KR + +YF I +Y +
Sbjct: 677 KAKRGELSKYFRTQINSLYENI 698
|
|
| UNIPROTKB|F1Q0U3 ACSL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
Identities = 268/622 (43%), Positives = 386/622 (62%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + + LG R YKW++Y + +GS L++ G
Sbjct: 71 YSDVKTMYDVFQRGLAVSDNGPCLGYRKPNQ----PYKWLSYRQVSDRAEYLGSCLLHKG 126
Query: 135 ISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S +G++ NRPEW+I + AC YS ++VPLYDTLG +A+ YIVN A + AV C
Sbjct: 127 YEPSSDQSVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGAEAIIYIVNKADIAAVICD 186
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
PQ ++L+ + + P +++I+++ +D + G++IL+ + G+ N +
Sbjct: 187 TPQKASTLIENMEKGLTPGLKMIILMDPFEDDLKERAEKCGIEILSLFDAEILGKENFRK 246
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY----PSDVYISYLP 305
PP+P+D++ IC+TSGTTG PKGA+L+H N+I++V+ ++ P DV ISYLP
Sbjct: 247 PVPPRPEDLSIICFTSGTTGDPKGAMLTHQNIISNVSSFLKCMEYTFKPTPEDVTISYLP 306
Query: 306 LAHIYERANQVMTVYS-GVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364
LAH++ER Q + +YS G VGF+QGD L +D+ L+PT+F SVPRL NRIY + +
Sbjct: 307 LAHMFERIVQAV-IYSCGARVGFFQGDIRLLPEDLKTLKPTLFPSVPRLLNRIYDKVQNE 365
Query: 365 VRTSGGLRERLFNAAYNAKKQAMLSGK-NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
+T L++ L N A + K + G +WD+L+F KI+ LGGR+ F+ +GA+P+
Sbjct: 366 AKTP--LKKFLLNLAISCKFNEVKKGIIRRDSIWDKLIFAKIQATLGGRINFVVTGAAPI 423
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN 483
S VL FL+ G V E YG TE + + GD SGHVG P A +KL DVP+MN
Sbjct: 424 SSPVLMFLRAALGCPVFEAYGQTECTAGCTFTSPGDWTSGHVGVPLACNHVKLEDVPDMN 483
Query: 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
Y S + GEIC++G +FKGY KD +TKE +DEDGW HTGDIG W+P G LKIIDR
Sbjct: 484 YFSVNN---EGEICIKGSNVFKGYLKDPEKTKEALDEDGWLHTGDIGRWLPNGTLKIIDR 540
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603
KKNIFKLAQGEYIA EKIEN+Y + + V Q FV+GDS S+LV +V D + L ++ A
Sbjct: 541 KKNIFKLAQGEYIAPEKIENIYIRSRPVSQIFVHGDSLRSSLVGVVVPDPEVLPSFVAKL 600
Query: 604 GIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTF 663
G++ +LE+LC + R A+L D+ +G++ L+ FE VK + L LEPF++ENGLLTPT
Sbjct: 601 GVK-GSLEELCKNNNVREAILEDLQKVGKDGGLKSFEQVKNIFLQLEPFSIENGLLTPTL 659
Query: 664 KIKRPQAKQYFAKAIADMYAEL 685
K KR + +YF I +Y +
Sbjct: 660 KAKRGELSKYFRTQINSLYENI 681
|
|
| ZFIN|ZDB-GENE-040801-88 zgc:101071 "zgc:101071" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1277 (454.6 bits), Expect = 3.5e-130, P = 3.5e-130
Identities = 259/584 (44%), Positives = 368/584 (63%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GS ++ G SK IG++ NRPEW I + AC YS ISVPL
Sbjct: 118 YEWLSYSEVIERAEHLGSAFLHKGHSKSGDPYIGIFSQNRPEWTIAELACYTYSLISVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS-EVPTVRLIVVIGGIDDQIPSLP 226
YDTLG +A+ YI++ + V C VP+ LL C+S +V+ ++++ +D + S
Sbjct: 178 YDTLGTEAISYILDKTCISTVVCDVPEKAGLLLECVSGRQHSVKTLILMADVDADLQSRA 237
Query: 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
G+QI++ ++ + G+++ + PP+PDD+A IC+TSGTTG PKGA+L+H N++++++
Sbjct: 238 QQCGIQIMSLTDAENMGKTHRRQPEPPQPDDLAVICFTSGTTGNPKGAMLTHRNIVSNIS 297
Query: 287 G---ATLGTKFYPS-DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAAL 342
T T S D +ISYLPLAH++ER Q + + G +G++QGD LMDD+ AL
Sbjct: 298 AFIHVTNSTCPLSSRDSHISYLPLAHMFERVVQGVVLLHGARIGYFQGDIRVLMDDLIAL 357
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG-KNPSPMWDRLV 401
+PT+F VPRL NR++ I T L+ RL A+ K+ M SG +WD+++
Sbjct: 358 KPTIFPVVPRLLNRMFDKIYGQANTP--LKRRLLEFAFRRKEAEMKSGIMRRDSIWDKII 415
Query: 402 FNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNL 461
F K++ +GG VR M +GA+P+S VL FL+ G + EGYG TE + + GD
Sbjct: 416 FKKVQASVGGCVRMMVTGAAPISEPVLTFLRAALGCQFYEGYGQTECTAGSTTTLPGDWT 475
Query: 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED 521
+GHVG+P +IKLVDV EMNY + + GE+CVRGP FKGY KD +TKE +DE+
Sbjct: 476 AGHVGAPLPCNDIKLVDVAEMNYYAANG---EGEVCVRGPNAFKGYLKDPEKTKEALDEE 532
Query: 522 GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF 581
GW HTGDIG W+P G LKI+DRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+GDS
Sbjct: 533 GWVHTGDIGRWLPNGSLKIVDRKKHIFKLAQGEYIAPEKIENIYIRSEAVVQAFVHGDSL 592
Query: 582 NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEF 641
+ LVAI+ D D L WA GI+ E LC + + A+L D+ LG+E+ L+ FE
Sbjct: 593 QACLVAIIVPDPDFLPGWAKKRGIE-GTYEDLCKNKDIKKAILEDIIKLGKESGLKSFEQ 651
Query: 642 VKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 685
VK + L E FT++NGLLTPT K KR + +F I ++YA +
Sbjct: 652 VKDIALHSEMFTIQNGLLTPTLKAKRADLRNHFRSHIDELYANI 695
|
|
| UNIPROTKB|E2QUL3 ACSL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
Identities = 274/637 (43%), Positives = 390/637 (61%)
Query: 63 RSPLKLVSRFP---DHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119
RSPL L S P + ++ T ++ F R + D LG+R + D Y+W++Y +
Sbjct: 72 RSPL-LDSDEPLVYFYDDVRTIYEGFQRGIQVSNDGPCLGSR-KPDQP---YEWLSYKQV 126
Query: 120 GTARTEVGSGLIYHGISKG--SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAV 177
VGS LI G IG++ NRPEW+I++ C AYS + VPLYDTLG +A+
Sbjct: 127 AEIAECVGSALIQKGFKTAPDQFIGIFAQNRPEWVIIEQGCFAYSMVVVPLYDTLGTEAI 186
Query: 178 KYIVNHASVQAVFC-VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
YI+N A + +F P N LL + +P +++IV++ + GV+I+
Sbjct: 187 TYIINKAELSLIFVDKPDKANLLLDGVENKLIPGLKIIVLMDSYGIDLLERGKRCGVEII 246
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK- 293
+ + GR+N Q PP P+D+A IC+TSGTTG PKGA+++H N+++ + T+
Sbjct: 247 SMKAMEDLGRANRQRPKPPAPEDLAVICFTSGTTGNPKGAMITHRNIVSDCSAFVKVTEK 306
Query: 294 ---FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
SD +IS+LPLAH+YE+ Q + + G +GF+QGD LMDD+ AL+PT+F V
Sbjct: 307 VLALNASDTHISFLPLAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVV 366
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDK 408
PRL NR++ I T+ L+ L + A K+ + SG +N S +WD+L+F+KI+
Sbjct: 367 PRLLNRMFDRIFGQANTT--LKRWLLDFASKRKEAELRSGIIRNNS-LWDKLIFHKIQSS 423
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSP 468
LGG+VR M +GA+P+S VL FL+ G + EGYG TE + GD +GHVGSP
Sbjct: 424 LGGKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLTVPGDWTAGHVGSP 483
Query: 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
IKLVDV EMNY + GE+CV+GP +FKGY KD +T EV+D+DGW HTGD
Sbjct: 484 MPCNLIKLVDVEEMNYLAAKG---EGEVCVKGPNVFKGYLKDPAKTAEVLDKDGWLHTGD 540
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAI 588
IG W+P G LKIIDRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AI
Sbjct: 541 IGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAI 600
Query: 589 VSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLV 648
V D + L WA +G++ + E+LC + R AVL DM LG+++ L+ FE VK + L
Sbjct: 601 VVPDVETLGPWARKKGLE-GSFEELCRNKDVRKAVLEDMVRLGKDSGLKPFEQVKGIALH 659
Query: 649 LEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 685
E F+++NGLLTPT K KRP+ + YF I ++Y+ +
Sbjct: 660 PELFSIDNGLLTPTMKAKRPELRNYFRSQIDELYSTI 696
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8LKS5 | LACS7_ARATH | 6, ., 2, ., 1, ., 3 | 0.7417 | 0.9971 | 0.99 | yes | no |
| Q9JID6 | ACSL1_CAVPO | 6, ., 2, ., 1, ., 3 | 0.4228 | 0.8633 | 0.8595 | yes | no |
| Q55DR6 | FCSA_DICDI | 6, ., 2, ., 1, ., 3 | 0.4267 | 0.8604 | 0.8965 | yes | no |
| Q8LPS1 | LACS6_ARATH | 6, ., 2, ., 1, ., 3 | 0.7923 | 0.9827 | 0.9743 | no | no |
| Q9UKU0 | ACSL6_HUMAN | 6, ., 2, ., 1, ., 3 | 0.4615 | 0.8129 | 0.8106 | yes | no |
| Q9P7D7 | LCF2_SCHPO | 6, ., 2, ., 1, ., 3 | 0.3056 | 0.9151 | 0.9230 | yes | no |
| Q91WC3 | ACSL6_MOUSE | 6, ., 2, ., 1, ., 3 | 0.4571 | 0.8115 | 0.8091 | yes | no |
| P39518 | LCF2_YEAST | 6, ., 2, ., 1, ., 3 | 0.3081 | 0.8661 | 0.8091 | yes | no |
| P33124 | ACSL6_RAT | 6, ., 2, ., 1, ., 3 | 0.4598 | 0.8129 | 0.8106 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00019949001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (700 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00038876001 | SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa) | • | • | 0.908 | |||||||
| GSVIVG00018681001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa) | • | • | 0.907 | |||||||
| GSVIVG00033040001 | SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa) | • | 0.899 | ||||||||
| GSVIVG00009919001 | SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa) | • | 0.899 | ||||||||
| GSVIVG00009515001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa) | • | 0.899 | ||||||||
| GSVIVG00025319001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa) | • | 0.800 | ||||||||
| GSVIVG00019100001 | SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa) | • | 0.800 | ||||||||
| GSVIVG00009528001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa) | • | 0.800 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 695 | |||
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 0.0 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-179 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-176 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-165 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-153 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-130 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-129 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-112 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-98 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 5e-82 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 2e-74 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 2e-66 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 2e-59 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 5e-59 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-53 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 2e-53 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 4e-50 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 1e-49 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 3e-49 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-42 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 3e-42 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 4e-42 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 2e-40 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 4e-40 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 8e-39 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 8e-38 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-37 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 5e-37 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 4e-36 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 8e-34 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-33 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 4e-33 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 5e-32 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-31 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 2e-31 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 8e-31 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 2e-30 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-30 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-30 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 5e-29 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 7e-29 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 4e-28 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 7e-28 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 4e-27 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 5e-27 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 1e-26 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 2e-26 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 3e-26 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 4e-26 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 6e-26 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 7e-26 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 1e-25 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 4e-25 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 5e-25 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 5e-25 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 5e-25 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 1e-23 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 1e-23 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 6e-23 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 9e-23 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 1e-22 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-22 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 2e-22 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 5e-21 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 6e-21 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 4e-20 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 4e-20 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 5e-20 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 1e-19 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 2e-19 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 3e-19 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 3e-19 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 8e-19 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 3e-18 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 6e-18 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 7e-18 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 1e-17 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 2e-17 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 3e-17 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 3e-17 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 8e-17 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-16 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 4e-16 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 4e-16 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 6e-16 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 6e-16 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 6e-16 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-15 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 4e-15 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 4e-15 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 5e-15 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 6e-15 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 9e-15 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-14 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 3e-14 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 3e-14 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 3e-14 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 4e-14 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 5e-14 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 1e-13 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 1e-13 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 2e-13 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 3e-13 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 3e-13 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-12 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 1e-12 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 1e-12 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 2e-12 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 2e-12 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 5e-12 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-11 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-11 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 3e-11 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 5e-11 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 8e-11 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 8e-11 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 8e-11 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 9e-11 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-10 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-10 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 1e-10 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 2e-10 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 2e-10 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 3e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 4e-10 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 4e-10 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 2e-09 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 2e-09 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 4e-09 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 9e-09 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 9e-09 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 1e-08 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 2e-08 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 2e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-08 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-08 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 2e-08 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 3e-08 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-08 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 9e-08 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 9e-08 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 9e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-07 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 1e-07 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 1e-07 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 1e-07 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-07 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-07 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 2e-07 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 5e-07 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 6e-07 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 7e-07 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 2e-06 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 2e-06 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 2e-06 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 2e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-06 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 3e-06 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 3e-06 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 5e-06 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 6e-06 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 6e-06 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 7e-06 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 7e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 8e-06 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 9e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-05 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 1e-05 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 2e-05 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 3e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-05 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 6e-05 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 6e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 7e-05 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 9e-05 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 1e-04 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 1e-04 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-04 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 3e-04 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 3e-04 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 5e-04 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 8e-04 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 0.001 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 0.001 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.001 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 0.002 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 0.002 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 0.002 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 0.003 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 1379 bits (3570), Expect = 0.0
Identities = 546/651 (83%), Positives = 609/651 (93%)
Query: 36 EYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDY 95
E+ EQGYSVVLPEKL TGKWNVYRS+RSPLKLVSRFPDHPEIGT HDNFV AV+TFRDY
Sbjct: 1 EFVHEQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDY 60
Query: 96 KYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155
KYLGTR+RVDGTVGEYKWMTYGEAGTART +GSGL+ HGI KG+C+GLYF+NRPEWLIVD
Sbjct: 61 KYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVD 120
Query: 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVI 215
HACSAYS++SVPLYDTLGPDAVK+IVNHA V A+FCVPQTLN+LLSCLSE+P+VRLIVV+
Sbjct: 121 HACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVV 180
Query: 216 GGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAV 275
GG D+ +PSLP TGV+I+TYS LL+QGRS+ QPF PPKP+DVATICYTSGTTGTPKG V
Sbjct: 181 GGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVV 240
Query: 276 LSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKL 335
L+HGNLIA+VAG++L TKFYPSDV+ISYLPLAHIYER NQ++ ++ GVAVGFYQGDN+KL
Sbjct: 241 LTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKL 300
Query: 336 MDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395
MDD+AALRPT+FCSVPRLYNRIY GIT+AV+ SGGL+ERLFNAAYNAKKQA+ +GKNPSP
Sbjct: 301 MDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSP 360
Query: 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455
MWDRLVFNKIK KLGGRVRFM SGASPLSPDV++FL+ICFGGRV EGYGMTETSC+IS +
Sbjct: 361 MWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGM 420
Query: 456 DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK 515
DEGDNLSGHVGSPN ACE+KLVDVPEMNYTSEDQP PRGEICVRGP+IFKGYYKDE+QT+
Sbjct: 421 DEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTR 480
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCF 575
EVIDEDGW HTGDIG+W+PGGRLKIIDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCF
Sbjct: 481 EVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCF 540
Query: 576 VYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQ 635
VYGDS NS+LVA+V VD + LKAWAASEGI+YE+L+QLCNDPR RAAVLADMD++GREAQ
Sbjct: 541 VYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQ 600
Query: 636 LRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAELS 686
LRGFEF KAVTLV EPFTVENGLLTPTFK+KRPQAK YFAKAI+DMYAEL+
Sbjct: 601 LRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYAELA 651
|
Length = 651 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 820 bits (2120), Expect = 0.0
Identities = 287/577 (49%), Positives = 370/577 (64%), Gaps = 41/577 (7%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G Y+W++Y E +GSGL G+ G IG++ NRPEW+I + AC + S + VPL
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
YDTLG +A++YI+N + VFC
Sbjct: 61 YDTLGEEAIEYILNETEISIVFC------------------------------------- 83
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
V++ ++ L G+ N P +PPKP+D+ATI YTSGTTG PKG +L+HGN++A VAG
Sbjct: 84 DAVKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGI 143
Query: 289 --TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTV 346
+ P+DVYISYLPLAHI+ER + + +Y G +G+Y GD L D+ L+PTV
Sbjct: 144 NKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTV 203
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP-SPMWDRLVFNKI 405
F VPR+ +RIY GI + V GGL+ LFN AYN K A+ G SP+WD+LVF KI
Sbjct: 204 FVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKI 263
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV 465
K LGGRVR M SG +PLSPD +FL++ G V +GYG+TET + D GD +GHV
Sbjct: 264 KAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHV 323
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
G P CEIKLVDVPEM Y ++D P PRGEIC+RGP +FKGYYK+ +T E DEDGWFH
Sbjct: 324 GPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFH 382
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSAL 585
TGDIG W+P G LKIIDRKKN+FKL+QGEY+A EK+EN+Y V Q VYGDS S L
Sbjct: 383 TGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLKSFL 442
Query: 586 VAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAV 645
VAIV D+D L+ WAA G + E+LCN+ + + A+L D++ +G+E L+GFE VKA+
Sbjct: 443 VAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGFEIVKAI 502
Query: 646 TLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 682
L EPFT ENGLLTPTFK+KRPQ K+ + K I +MY
Sbjct: 503 HLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 541 bits (1396), Expect = 0.0
Identities = 262/624 (41%), Positives = 374/624 (59%), Gaps = 18/624 (2%)
Query: 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGIS 136
+I + F AV + + + LG R D VG Y W+TY E A +GS + G++
Sbjct: 41 DIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVN 100
Query: 137 KGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL 196
G G+Y N PEW+I AC++ VPLYDTLG +AV++I+NHA V F +
Sbjct: 101 PGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI 160
Query: 197 NSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK- 254
+S+LSCL + + ++ IV G + + GV ++ G + + PPK
Sbjct: 161 SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCE--LPPKQ 218
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-----PSDVYISYLPLAHI 309
D+ TI YTSGTTG PKG +L++ +IA V K D Y SYLPLAH+
Sbjct: 219 KTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV 278
Query: 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
Y++ + + G ++GF+QGD LM+D+ AL+PT+FC VPR+Y+RIY GI + + G
Sbjct: 279 YDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGG 338
Query: 370 GLRERLFNAAYNAKKQAM---LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
LR++LF+ AYN K + L + SP DRLVF+KIK+ LGGRVR + SGA+PL
Sbjct: 339 MLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRH 398
Query: 427 VLDFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484
V +FL++ +++GYG+TE+ C S + ++ G VG P E +L VPEM Y
Sbjct: 399 VEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVF-SMVGTVGVPMTTIEARLESVPEMGY 457
Query: 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
+ PRGEIC+RG +F GY+K + T+EV+ DGWFHTGDIG W P G +KIIDRK
Sbjct: 458 DALSD-VPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKIIDRK 515
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEG 604
KNIFKL+QGEY+A E +EN Y++C + +VYG+SF S LVA+V D+ AL+ WAA+
Sbjct: 516 KNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNN 575
Query: 605 IQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFK 664
+ + LC + +AR +L +++S G++ QLRGFE +KA+ L PF +E L+TPTFK
Sbjct: 576 KT-GDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFK 634
Query: 665 IKRPQAKQYFAKAIADMYAELSRS 688
+KRPQ +Y+ I +Y+E
Sbjct: 635 LKRPQLLKYYKDCIDQLYSEAKGG 658
|
Length = 660 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 525 bits (1353), Expect = e-179
Identities = 269/641 (41%), Positives = 371/641 (57%), Gaps = 22/641 (3%)
Query: 58 VYRSSRSPLKLVSRFPD-HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
VYR+ S FP +I T D F ++V+ + D K LG R VDG VG Y W TY
Sbjct: 24 VYRNLLSK----KGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTY 79
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
E ++GS L G GS +G+Y N P+W++ AC+A+S I VPLYDTLGP A
Sbjct: 80 KEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGA 139
Query: 177 VKYIVNHASVQAVFCVPQTLNSLLS--CLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
V YIV+HA + VF + + LL C S ++ IV + ++ GV+
Sbjct: 140 VDYIVDHAEIDFVFVQDKKIKELLEPDCKS-AKRLKAIVSFTSVTEEESDKASQIGVKTY 198
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---- 290
++ + L G+ N +PPKP D+ TI YTSGT+G PKG VL+H + V G L
Sbjct: 199 SWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQ 258
Query: 291 -GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCS 349
K DVY+S+LPLAHI +R + G +VG+Y GD L DD+ L+PT+
Sbjct: 259 FEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAG 318
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG---KNPSPMWDRLVFNKIK 406
VPR++ RI+ GI A++ R +FNA Y K M G K SPM D L F K+K
Sbjct: 319 VPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVK 378
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GH 464
KLGGR+R + SG +PLS ++ +FL++ V +GYG+TET + L D + G
Sbjct: 379 AKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET-LGPTTLGFPDEMCMLGT 437
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
VG+P E++L +VPEM Y +P PRGEICVRG +F GYYK+ T+EV+ +DGWF
Sbjct: 438 VGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVM-KDGWF 495
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSA 584
HTGDIG +P G LKIIDRKKN+ KL+QGEY+A E +ENVY + V +VYGDSF S
Sbjct: 496 HTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSM 555
Query: 585 LVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKA 644
LVA+V +++ WA G + E+LC+ P + +L+++ S + +LRGFE++K
Sbjct: 556 LVAVVVPNEENTNKWAKDNGFT-GSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKG 614
Query: 645 VTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 685
V L +PF VE L+T T K +R +Y+ I +MY +L
Sbjct: 615 VILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYRKL 655
|
Length = 660 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 516 bits (1332), Expect = e-176
Identities = 218/614 (35%), Positives = 310/614 (50%), Gaps = 40/614 (6%)
Query: 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLY 144
V D L + G ++ +TY E + SGL+ GI G + ++
Sbjct: 22 LAERVKDRPDGVALMYKEL-----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIF 76
Query: 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCL 203
NRPEW I D A A +SVP+Y T P+ + YI+N + + +F + L+ +L L
Sbjct: 77 AANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVL 136
Query: 204 SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL---LSQGRSNLQPFSPPKPDDVAT 260
+ P V ++VI + + +++ + L +PPKPDD+AT
Sbjct: 137 EDCPKVVDLIVIIDLVREAVE-AKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLAT 195
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVAGA-TLGTKFYPSDVYISYLPLAHIYERANQVMTV 319
I YTSGTTGTPKG +L+H NL+A VAG + P D +S+LPLAHI+ERA +
Sbjct: 196 IIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLA 255
Query: 320 -YSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
Y GV V F + + +D+ +RPTV VPR++ ++Y GI V + +R +LF
Sbjct: 256 LYGGVTVLFKEDPRTLL--EDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFR 313
Query: 378 AAYNAK--KQAMLSGKNPSPMW----DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
A K + W DRLVF KI+D LGGR+R+ SG +PLSP++L F
Sbjct: 314 WALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFF 373
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+ G + EGYG+TETS ++S + G VG P E+K+ D
Sbjct: 374 RSL-GIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD------------- 419
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
GEI VRGP + KGYYK+ T E EDGWF TGD+G G L I RKK + KL+
Sbjct: 420 -DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLS 478
Query: 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS-EGIQYENL 610
G+ IA E IE+ AK + Q V GD LVA++ D DAL+ WA S + +
Sbjct: 479 NGKNIAPEPIESKLAKSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVISASR 537
Query: 611 EQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQA 670
E+L DP+ +L ++ + GFE +K L+ + FT ENG LTPT K+KR
Sbjct: 538 EELARDPKLLKLILPRVNKGNKRLF--GFEQIKKFVLLPKEFTPENGELTPTLKLKRHVI 595
Query: 671 KQYFAKAIADMYAE 684
+ I +Y+
Sbjct: 596 LDRYKDEIEAVYSR 609
|
Length = 613 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 489 bits (1261), Expect = e-165
Identities = 258/644 (40%), Positives = 380/644 (59%), Gaps = 22/644 (3%)
Query: 58 VYRSSRSPLKLVSRFPDHPE-IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
VYRS + FP+ E + + D F +V+ + + LG R VDG G+Y W TY
Sbjct: 27 VYRSIFAK----DGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTY 82
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
E ++G+ L G+ + G+Y N PEW+I AC+A+ VPLYDTLG A
Sbjct: 83 QEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGA 142
Query: 177 VKYIVNHASVQAVFCVPQTLNSLL-SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235
V++I++H+ V VF + ++ L +C + ++ +V GG+ + T G+ I
Sbjct: 143 VEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYA 202
Query: 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-----TL 290
+ L G K D+ TI YTSGTTG PKG ++S+ +++ +AG +
Sbjct: 203 WDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSA 262
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
DVY+SYLPLAHI++R + + G A+GF++GD L++D+ L+PT+FC+V
Sbjct: 263 NAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAV 322
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN---PSPMWDRLVFNKIKD 407
PR+ +R+Y+G+ + G L++ +F++A++ K M G++ SP+ D+LVFNK+K
Sbjct: 323 PRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQ 382
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC---LISQLDEGDNLSGH 464
LGG VR + SGA+PL+ V FL++ V +GYG+TE SC +S DE D L G
Sbjct: 383 GLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE-SCAGTFVSLPDELDML-GT 440
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
VG P +I+L VPEM Y + PRGEIC+RG +F GYYK E TKEV+ DGW
Sbjct: 441 VGPPVPNVDIRLESVPEMEYDALAS-TPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWL 498
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSA 584
HTGD+G W P G +KIIDRKKNIFKL+QGEY+A E IEN+Y + + V +VYG+SF S
Sbjct: 499 HTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESF 558
Query: 585 LVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKA 644
LVAI + +Q L+ WAA G+ + LC + +A+ +L ++ + +E +++GFE +KA
Sbjct: 559 LVAIANPNQQILERWAAENGVS-GDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKA 617
Query: 645 VTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAELSRS 688
+ L PF +E LLTPTFK KRPQ +Y+ I +MY +
Sbjct: 618 IHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTTNEK 661
|
Length = 666 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 459 bits (1184), Expect = e-153
Identities = 231/637 (36%), Positives = 345/637 (54%), Gaps = 42/637 (6%)
Query: 85 FVRAVDTFRDYKYLGTRVRV--------DG------TVGEYKWMTYGEAGTARTEVGSGL 130
F ++ + D + LGTR + DG +GEY+W+TYG+ SGL
Sbjct: 64 FEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGL 123
Query: 131 IYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVF 190
+ G +K + ++ R EWLI C + V +Y +LG +A+ + +N V V
Sbjct: 124 VALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVI 183
Query: 191 CVPQTLNSLLSCLSEVPTVRLIVVI-GGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
C + L L+ S++ TV+ ++ + D SL ++ + ++S + G+ N
Sbjct: 184 CDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVD 243
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-TLGTKFYPSDVYISYLPLAH 308
P P+D+A I YTSG+TG PKG +++HGN++A+VAG T+ K +DVY++YLPLAH
Sbjct: 244 PDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAH 303
Query: 309 IYERANQVMTVYSGVAVGFYQGDNMKLMD-----------DMAALRPTVFCSVPRLYNRI 357
I E A + + G A+G+ G + L D D +AL+PT+ +VP + +R+
Sbjct: 304 ILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRV 361
Query: 358 YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK------NPSPMWDRLVFNKIKDKLGG 411
G+ V GGL ++LF+ AY ++ A + G +WD LVF KI+ LGG
Sbjct: 362 RDGVRKKVDAKGGLAKKLFDIAY-KRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGG 420
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS-GHVGSPNA 470
R+RFM SG +PLS D F+ IC G + +GYG+TET C + E D+ S G VG P
Sbjct: 421 RIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTET-CAGATFSEWDDTSVGRVGPPLP 479
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEV--IDEDG--WFHT 526
C +KLV E Y D+P PRGEI + GP + GY+K++ +T EV +DE G WF+T
Sbjct: 480 CCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYT 539
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALV 586
GDIG + P G L+IIDRKK+I KL GEY++ K+E + +V V+ D F+S V
Sbjct: 540 GDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCV 599
Query: 587 AIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVT 646
A+V Q AL+ WA GI Y N +LC A V + + A+L FE +
Sbjct: 600 ALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIK 659
Query: 647 LVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 683
L+ EP+T E+GL+T K+KR Q ++ F + +Y
Sbjct: 660 LLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE 696
|
Length = 696 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 400 bits (1029), Expect = e-130
Identities = 202/597 (33%), Positives = 308/597 (51%), Gaps = 37/597 (6%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
E +++TY E G GL G++KGS + +Y R EWL + + S ++ +Y
Sbjct: 118 ETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVY 177
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPI 227
LG DA+ Y + +A+ C + + +LL + +P +I + D +P+
Sbjct: 178 ANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYL-----DSLPASVD 232
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKP---DDVATICYTSGTTGTPKGAVLSHGNLIAS 284
T G +++ +++++++G S P DD+A I YTSGTTG PKG + +HG+L A
Sbjct: 233 TEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG 292
Query: 285 VAGATLGTKFY-------PSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD 337
+ L + + Y SYLPLAHI E + + G +GF G L D
Sbjct: 293 IL--ALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTD 348
Query: 338 -------DMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390
D+ RP VPR+++ I + + + G L+ R+F+ AY ++ +A+ G
Sbjct: 349 TFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEG 408
Query: 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC 450
K+ +P W+ VF+ + LGGRVR M SG PLS +F+ + FG V +G+G+TET C
Sbjct: 409 KD-TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVC 466
Query: 451 LISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510
GD VG E+KL+D E +T D P PRGEI +RGP +FKGYYK
Sbjct: 467 CGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHT--DTPEPRGEILLRGPFLFKGYYKQ 524
Query: 511 EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKF 570
E T+EV+DEDGWFHTGD+G G L+II R K + K GEYIA E +E +Y + +
Sbjct: 525 EELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNEL 584
Query: 571 V---GQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADM 627
V G C V S + A+V D+ A+A GI+ E + DP + +
Sbjct: 585 VVPNGVC-VLVHPARSYICALVLTDEAKAMAFAKEHGIEGE-YPAILKDPEFQKKATESL 642
Query: 628 DSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAE 684
R A + FE V+ V ++ + +T ENG+LT K+KR + +A I +++A+
Sbjct: 643 QETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFAD 699
|
Length = 700 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 389 bits (1003), Expect = e-129
Identities = 155/418 (37%), Positives = 223/418 (53%), Gaps = 52/418 (12%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE-R 312
KPDD+AT+ YTSGTTG PKG +L+H NL+A A P D +S+LPLAH++E R
Sbjct: 86 KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQR 145
Query: 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
+ + + SG V F + L++D+ +RPTVF +VPR++ +IYAGI + V +G L+
Sbjct: 146 LGEYLPLSSGARVNFAESPE-TLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLK 204
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK 432
+LF A GGR+RF SG +PL P+VL+F +
Sbjct: 205 RKLFRWA----------------------------LGGGRLRFAVSGGAPLPPEVLEFFR 236
Query: 433 ICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP 492
G + EGYG+TETS + + GD G VG P E+++ +
Sbjct: 237 A-LGIPILEGYGLTETSGVATVNRPGDIRIGTVGKPLPGVEVRIAED------------- 282
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552
GEI VRGP + KGYYK+ T E +DEDGW HTGDIG G L I DRKK++ A
Sbjct: 283 -GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAG 341
Query: 553 GEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVSVDQDALKAWAASEGIQYENL 610
G+ IA + IEN ++ Q V GD + +AL+ + D +AL+ WA G+ +
Sbjct: 342 GKNIAPQPIENALKASPYISQAVVVGDDRPYLTALIVL---DPEALEKWAEQHGLPFTTY 398
Query: 611 EQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRP 668
L DP RA + +++ +L E +K L+ + F++E+G LTPT K++R
Sbjct: 399 ADLAEDPEVRALIRKEVEEANA--RLARVEQIKKFVLLPKEFSIEDGELTPTMKLRRR 454
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 347 bits (893), Expect = e-112
Identities = 189/571 (33%), Positives = 263/571 (46%), Gaps = 82/571 (14%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
G EY T+ + + + L G+ G I + N EW+I D A +
Sbjct: 1 GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPS 224
SVPLY TL + ++Y++ H+ +A+F V + + + I+
Sbjct: 58 SVPLYPTLTAETIRYVLEHSDAKALF-VGKLDDWDAMKAGVPEGLPTII----------L 106
Query: 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS 284
P +T + +LL+ LQ P+P+D+ATI YTSGTTG PKG +LS G +
Sbjct: 107 FPYSTLKDHYKWDDLLAATEP-LQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFA 165
Query: 285 VAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQG-DNMKLMDDMAAL 342
G P+D +SYLPLAHI ER + ++YSG V F + D D+
Sbjct: 166 AQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLD--TFAADLQRA 223
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
RPTVF SVPRL+ + GI + + L P+ LV
Sbjct: 224 RPTVFFSVPRLWTKFQQGILAKL--PPEKLNLLLKI----------------PILSSLVK 265
Query: 403 NKIKDKLG-GRVRFMGSGASPLSPDVLDF-----LKICFGGRVTEGYGMTETSCLISQLD 456
KI LG + R GSGA+P+ P ++ + L IC EGYGMTE +
Sbjct: 266 KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPIC------EGYGMTENFAYSTLNY 319
Query: 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKE 516
GD G VG P E+K+ SED GEI +R P + GYYKD +T E
Sbjct: 320 PGDRRIGTVGKPIPGVELKI---------SED-----GEILIRSPGLMSGYYKDPEKTAE 365
Query: 517 VIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
EDGW HTGD G G LKI R K +FK ++G+Y+A IEN+ + V Q V
Sbjct: 366 AFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCV 425
Query: 577 YGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQL 636
G VA+V + + A E ++ E+L+Q LA ++S +L
Sbjct: 426 VGSGLPQP-VALVVLSEAADP--LEREEVE-ESLQQT----------LAKVNS-----EL 466
Query: 637 RGFEFVKAVTLVLEPFTVENGLLTPTFKIKR 667
E + A+ +V E +TVENGLLTPT KIKR
Sbjct: 467 ESHERLSALVVVKEAWTVENGLLTPTLKIKR 497
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 309 bits (793), Expect = 1e-98
Identities = 125/473 (26%), Positives = 191/473 (40%), Gaps = 72/473 (15%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TY E + + L G+ G + + N PEW++ A VPL +L
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
+ + YI+ + + + + L LL L ++ + ++++ G +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIV-----------GDDGEGLD 109
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF 294
+ L G S P P PDD+A I YTSGTTG PKG +L+H NL+A AG
Sbjct: 110 LLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL 169
Query: 295 YPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK---LMDDMAALRPTVFCSVP 351
P D + LPL + +G + + L+D + + TV VP
Sbjct: 170 TPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVP 229
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
L + +K+ LS
Sbjct: 230 TLLRLLLKAP--------------------EEKKYDLS---------------------- 247
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETS--CLISQLDEGDNLSGHVGSP 468
+R + SG PL P++L L+ FGG + GYG TET+ + + + G +G P
Sbjct: 248 SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRP 307
Query: 469 NAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF- 524
E+K++D E +P P GE+C+RGP + +GY D T E EDGW
Sbjct: 308 LPGVEVKVLD-------EEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGM 360
Query: 525 -HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
TGD+G W G L+I+ RK + K+ GE I +IE V + V + V
Sbjct: 361 YRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 269 bits (690), Expect = 5e-82
Identities = 145/512 (28%), Positives = 221/512 (43%), Gaps = 80/512 (15%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + + L G+ G + + N PE+LI A ++VPL L
Sbjct: 39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P + YI+N A + + + L + +P V +++++G DD++P
Sbjct: 99 PRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLP---------- 148
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--ATLG 291
+T L ++G P PDD+A + YTSGTTG PKG VL+H NL+A+ AG A LG
Sbjct: 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALG 208
Query: 292 TKFYPSDVYISYLPLAHIYERANQVM---TVYSGVAVGFYQG---DNMKLMDDMAALRPT 345
P DV +S+LPL HI+ V + G + D +++ + + T
Sbjct: 209 GGLTPDDVVLSWLPLFHIF--GLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVT 266
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405
V VP + L +
Sbjct: 267 VLSGVPTFLREL-------------LDNPEKD---------------------------- 285
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQ--LDEGDNLS 462
D L +R + SG +PL P++L+ + FG + EGYG+TETS +++ D+
Sbjct: 286 DDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKP 345
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG 522
G VG P E+++VD E P GEI VRGP + KGY+ T E DEDG
Sbjct: 346 GSVGRPLPGVEVRIVDPD----GGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDG 401
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---D 579
W TGD+G G L I+ R K++ GE I E+IE V A+ V + V G +
Sbjct: 402 WLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDE 460
Query: 580 SFNSALVAIV--------SVDQDALKAWAASE 603
+ +VA+V + + L+A+
Sbjct: 461 RWGERVVAVVVLKPGGDAELTAEELRAFLRKR 492
|
Length = 534 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 2e-74
Identities = 172/620 (27%), Positives = 275/620 (44%), Gaps = 79/620 (12%)
Query: 112 KW--MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
W +TY + A + + G+ + +G+ N PEW I I+V +Y
Sbjct: 5 GWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIY 64
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVRLIVVIGG-IDDQIPSLPI 227
T P+A +Y+ + + L +L+ ++P ++ I+ + ++ P+L
Sbjct: 65 TTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNL-- 122
Query: 228 TTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL- 281
++ + GRS KP+ T+ YTSGTTG PKG +LSH N+
Sbjct: 123 ------YSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNIT 176
Query: 282 -IASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG----FYQGDNMK-- 334
A A + + + +SYLPL+HI A Q++ ++ ++VG F Q D +K
Sbjct: 177 WTAKAAVKHMDLRTVGQESVVSYLPLSHI---AAQILDIWLPISVGGCVYFAQPDALKGT 233
Query: 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA------YNAKKQAML 388
L+ + +RPT F VPR++ +I + + S GL+ ++ + A N K
Sbjct: 234 LVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMG-- 291
Query: 389 SGKNPSPMW----DRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDF---LKICFGGRVT 440
G++P PM +LVF K++ LG R + +GA+P+S + L+F L I +
Sbjct: 292 -GESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNI----PIM 346
Query: 441 EGYGMTETSCL--ISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
E YGM+ETS +S LS G CE K+ + P+ + GEIC+
Sbjct: 347 ELYGMSETSGPHTVSNPQNYRLLS--CGKALPGCETKIHN-PDAD--------GIGEICI 395
Query: 499 RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558
G +F GY E +T+E IDEDGW H+GD+G G L I R K + A GE +
Sbjct: 396 WGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPP 455
Query: 559 EKIEN-VYAKCKFVGQCFVYGDS--FNSALVAI-VSVDQ------DALK----AWAASEG 604
IE V + + + GD F S L+ + VD D L + G
Sbjct: 456 VPIEEAVKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPETGEPLDNLTEEAIEFCRLLG 515
Query: 605 IQYENLEQLCN--DPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPT 662
+ ++ DP A+ + + +EA + K V L + F+V G L PT
Sbjct: 516 SHATTVSEILAGKDPLVYEAIEEGIKRVNKEAISNAQKVQKWVILEKD-FSVPGGELGPT 574
Query: 663 FKIKRPQAKQYFAKAIADMY 682
K+KRP + + I +Y
Sbjct: 575 MKLKRPVVAKKYKDEIDKLY 594
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 227 bits (582), Expect = 2e-66
Identities = 133/512 (25%), Positives = 208/512 (40%), Gaps = 85/512 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TY E + + L G+ KG + ++ N E+L A + P+ L
Sbjct: 32 TTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLK 91
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P+ + YI+N A + V + + L + L ++PTVR ++V G ++
Sbjct: 92 PEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPA------APLAPEV 145
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
Y LL+ S+ F +D A + YTSGTTG PKG VLSH NL K
Sbjct: 146 GEYEELLA-AASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLK 204
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSG---VAVGFYQGDNMKLMDDMAALRPTVFCSV 350
DVY+ +P+ H++ + + +G V + +N L+D + R T F +V
Sbjct: 205 LSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPEN--LLDLIETERVTFFFAV 262
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P ++ Q +L + F+
Sbjct: 263 PTIW------------------------------QMLLKAPRAYFVD----FS------- 281
Query: 411 GRVRFMGSGASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLIS------QLDEGDNLSG 463
+R + G + L P +L +F + FG + +GYGMTETS ++S QL
Sbjct: 282 -SLRLVIYGGAALPPALLREFKEK-FGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRR 339
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVI 518
G P E ++VD + + P GEI VRGP + +GY+ T E I
Sbjct: 340 SAGRPLPGVEARIVD-DDGD------ELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI 392
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D GW HTGD+G G L I DR K++ GE I ++E+ V + V G
Sbjct: 393 D-GGWLHTGDVGYIDEDGYLYITDRIKDVIISG-GENIYPRELEDALYGHPAVAEVAVIG 450
Query: 579 ---DSFNSALVAIV------SVDQDALKAWAA 601
+ + VA+V ++D L+A+
Sbjct: 451 VPDEKWGERPVAVVVLKPGATLDAKELRAFLR 482
|
Length = 521 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-59
Identities = 108/364 (29%), Positives = 156/364 (42%), Gaps = 66/364 (18%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG VLSH NL+A+ DV +S LPL H+ + +
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 317 MT-VYSGVAVGFYQGDNM--KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373
+ + +G V Y+G ++ + R TV VP LY+ +
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL---------------- 104
Query: 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
K A G + S + R + SG PLSP++L+ +
Sbjct: 105 ---------AKAAEDRGYDLSSL-----------------RLLISGGEPLSPELLERFEE 138
Query: 434 CFGGRVTEGYGMTETSCLISQL-DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP 492
G + EGYG+TETS + S D G VG P E+++VD E +P P
Sbjct: 139 RPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVDE-------EGKPLP 191
Query: 493 ---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
GE+ VRGP + KGY+ + +T EDGW+ TGD+G G L I R K++ K
Sbjct: 192 PGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIK 251
Query: 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKAWA 600
+ GE + ++E+V + V + V G + +VA V + LKA
Sbjct: 252 VG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKAHL 310
Query: 601 ASEG 604
Sbjct: 311 RERL 314
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 5e-59
Identities = 113/450 (25%), Positives = 177/450 (39%), Gaps = 116/450 (25%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + L G+ KG + L N P++ I + VP+
Sbjct: 25 LTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYT 84
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P +++ +N + + +
Sbjct: 85 PRELEHQLNDSGAKVLIVA----------------------------------------- 103
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--ATLG 291
+++ + L+ G + L PDD+A + YT GTTG PKGA+L+H NL+A+V A +
Sbjct: 104 ISFEDALASG-APLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVK 162
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG---------DNMKLMDDMAAL 342
D +++ LPL HI+ +TV + +G G + ++ ++
Sbjct: 163 DLREGEDRFLTALPLFHIFG-----LTV--NMLLGLRLGATNVLVPNFRPINVLKEIKRY 215
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
R T+F VP LYN L N K+ S
Sbjct: 216 RFTIFPGVPTLYNA------------------LLNHP--EFKKYDFS------------- 242
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETSCLIS-QLDEGDN 460
+R SG +PL +V + F + G + EGYG+TETS + + +G+
Sbjct: 243 ---------SLRLCISGGAPLPVEVAERFEEK-TGAPLVEGYGLTETSPVTTVNPLDGER 292
Query: 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEV 517
G +G P E+K+VD E P GE+ VRGP + KGY+ +T EV
Sbjct: 293 KPGSIGLPLPGTEVKIVD-------DEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEV 345
Query: 518 IDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
+ DGW TGDIG G I+DRKK++
Sbjct: 346 LT-DGWLRTGDIGYMDEDGYFYIVDRKKDM 374
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 1e-53
Identities = 109/357 (30%), Positives = 159/357 (44%), Gaps = 55/357 (15%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG VL+HGNL A+ ++ SDV + LPL H++ N +
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNAL 148
Query: 317 M-TVYSGVAVGFYQGDNMKLMDDMAAL-RPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
+++G +V F + + D + L R TVF VP +Y R+ E
Sbjct: 149 HCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEH-----------YEF 197
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
AA A+ +R SG++ L VL+ +
Sbjct: 198 DDAAAAAARN----------------------------LRLFVSGSAALPVPVLERWEER 229
Query: 435 FGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494
G + E YGMTET +S +G+ G VG P E+++VD + + G
Sbjct: 230 TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEV---G 286
Query: 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK-NIFKLAQG 553
EI VRGP +F Y+ T E EDGWF TGD+G+ G +I+ RK +I K G
Sbjct: 287 EIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSG-G 345
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKAWAA 601
++A +IE + V + V G + A+VA+V ++ L+AWA
Sbjct: 346 YKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAR 402
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 2e-53
Identities = 133/458 (29%), Positives = 219/458 (47%), Gaps = 27/458 (5%)
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
G+ I+ + ++ +N + PD + +I YTSGT+G PKG +LS+ NL +V
Sbjct: 277 KLGISIILFDDMTKNKTTNYK-IQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVP 335
Query: 288 ATLGTKF--YPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
+ F Y ++SYLP++HIYER ++ G + + D D+ +
Sbjct: 336 LCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGN 395
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL--VFN 403
+ VP+++NRIY I + + L+ L + +K G S + + + +
Sbjct: 396 ILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGF--SKFLEGITHISS 453
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
KIKDK+ + + +G LSP + + L + +GYG+TET+ I DN +
Sbjct: 454 KIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTE 513
Query: 464 HVG---SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520
+G SPN +++ + Y + D P+GE+ ++ IF GY+ ++ QTK E
Sbjct: 514 SIGGPISPNTKYKVRTWET----YKATDTL-PKGELLIKSDSIFSGYFLEKEQTKNAFTE 568
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS 580
DG+F TGDI G L +DR K + KL+QGEYI + + N+Y++ F+ C VYGD
Sbjct: 569 DGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD 628
Query: 581 FNSALVAIVSVDQDAL------KAWAASEGIQYENLEQLCNDPRARAAVLAD-----MDS 629
+AI+SVD+ L S GI +N + D + D M
Sbjct: 629 SMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLE 688
Query: 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKR 667
+ ++ L + + + L + + N LTPTFK+KR
Sbjct: 689 VYKKTNLNRYNIINDIYLTSKVWDTNN-YLTPTFKVKR 725
|
Length = 746 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 4e-50
Identities = 106/372 (28%), Positives = 151/372 (40%), Gaps = 82/372 (22%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD A I YTSGTTG PKGA+L+H N++ + D + +PL H++
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVF---- 56
Query: 315 QVMTVYSGVAVGFYQGDNMKLM---DDMAAL------RPTVFCSVPRLYNRIYAGITSAV 365
+ GV G + LM D AAL R T VP ++
Sbjct: 57 ---GLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMF----------- 102
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSP 425
A+L P +D+ +R SG +P+ P
Sbjct: 103 -------------------IALLE----HPDFDKFDL--------SSLRTGISGGAPVPP 131
Query: 426 DVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGH---VGSPNAACEIKLVDVPE 481
+++ ++ F +T GYGMTETS + +Q D VG P E+K+VD
Sbjct: 132 ELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVD--- 188
Query: 482 MNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ P GEICVRG + KGYY D T E ID DGW HTGD+G G L
Sbjct: 189 ----PDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYL 244
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------ 589
+I+ R K++ GE I +IE V + V G + + A V
Sbjct: 245 RIVGRIKDMIIRG-GENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGA 303
Query: 590 SVDQDALKAWAA 601
++ ++ L A+
Sbjct: 304 TLTEEELIAFCR 315
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 1e-49
Identities = 113/450 (25%), Positives = 177/450 (39%), Gaps = 77/450 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + L GI KG + ++ N P W+I + VPL
Sbjct: 31 LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D YI+ +A+F + L S + +P + +V+ + ++
Sbjct: 91 ADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEE------DDPHTEKM 144
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGATLG 291
T+++ L+ G + PDDVA I +TSGTTG PKGA+L+H L+ A+ LG
Sbjct: 145 KTFTDFLAAG-DPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNM---------KLMDDMAAL 342
D Y++ P H++ GV +G + ++ +
Sbjct: 204 LT--EGDRYLAANPFFHVF-----GYKA--GVNAPLMRGATILPLPVFDPDEVFRLIETE 254
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
R TV P +YN + + + LS
Sbjct: 255 RITVLPGPPTMYNSLL--------------------QHPDRSAEDLSS------------ 282
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETS---CLISQLDEG 458
+R +GA+ + +L+ + G V GYG++E S D+
Sbjct: 283 ----------LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDR 332
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
++G +G+ A E K+V+ E GE+ VRGP + KGYY D T I
Sbjct: 333 KTVAGTIGTAIAGVENKIVN----ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAI 388
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIF 548
D DGW HTGD+G G L I+DRKK++F
Sbjct: 389 DADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418
|
Length = 513 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 3e-49
Identities = 112/371 (30%), Positives = 156/371 (42%), Gaps = 88/371 (23%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
DD A I YTSGTTG PKG +L+H NL+A+ A G P DVY+ PL H
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFL 60
Query: 316 VMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
+ + +G V F D ++D + R T VP ++ R+ L
Sbjct: 61 LPALAAGGTVVLMPKF---DPEAVLDLIERHRVTHTFLVPTMFQRL-------------L 104
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
R F A Y+ LS +R + GA+P+ ++ +
Sbjct: 105 RLPDF-ARYD------LS----------------------SLRLIIYGAAPMPAELKRAM 135
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQ 489
FG +GYGMTET + L D L G VG P E+++VD + +
Sbjct: 136 IEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVD-------EDGR 188
Query: 490 PCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK- 545
P GEI VRGP + GY+ T E + DGW HTGD+G G L I+DRKK
Sbjct: 189 ELPPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDLGYLDEDGYLYIVDRKKD 247
Query: 546 -------NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------ 589
NI+ AE +ENV V V G + + A+VA+V
Sbjct: 248 MIISGGENIY--------PAE-VENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPGA 298
Query: 590 SVDQDALKAWA 600
++D + L A+
Sbjct: 299 TLDAEELIAFC 309
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 1e-42
Identities = 131/520 (25%), Positives = 196/520 (37%), Gaps = 103/520 (19%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTE-VGSGLIYHGISKGSCIGLYF 145
RA + D T V V G Y + + R + S L GI KG + +
Sbjct: 12 RAAKVYPDR----TAV-VYGDR-RYTYRETYD----RCRRLASALSKLGIGKGDVVAVLA 61
Query: 146 VNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE 205
N P L + VPL L D + +I+NH+ + +F + L+ L+
Sbjct: 62 PNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL 121
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ T +I + P + Y +LL+ G + P P D ++ YTS
Sbjct: 122 LSTKEIIDTEIIVIS-----PAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDPISLNYTS 176
Query: 266 GTTGTPKGAVLSH-GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ-----VMTV 319
GTTG PKG V +H G + ++ G + VY+ LP+ H N +T
Sbjct: 177 GTTGNPKGVVYTHRGAYLNAL-GNVIEWGMPDRPVYLWTLPMFH----CNGWCFPWAITA 231
Query: 320 YSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379
G V + D + D + + T C P + N + A
Sbjct: 232 VGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNML--------------------AN 271
Query: 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRV 439
+ L VR M +GA P P + G V
Sbjct: 272 APEADKL---------------------PLPRPVRVMTAGAPP--PPAVIKKMEELGFEV 308
Query: 440 TEGYGMTETSCLIS---QLDEGDNLS-------------GHVGSPNAACEIKLVDVPEMN 483
T YG+TET I+ E D L +VG E+ +VD PE
Sbjct: 309 THVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVG----LEEVDVVD-PETM 363
Query: 484 YTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ PR GEI +RG + KGYYK+ T+E GWFH+GD+ + P G +
Sbjct: 364 -----KDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPDGYI 417
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+I DR K+I ++ GE I++ ++E V K V + V
Sbjct: 418 EIKDRSKDII-ISGGENISSIEVEGVLYKHPAVLEAAVVA 456
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 3e-42
Identities = 110/373 (29%), Positives = 162/373 (43%), Gaps = 73/373 (19%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY-ERA 313
PDD A I +TSGTTG PKG L+H NL+AS K PSD ++ +PL HI+
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIV 60
Query: 314 NQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
+ + T+ +G +V F K DD+A R T + +VP ++
Sbjct: 61 SLLATLLAGGSVVCPPKF---SASKFWDDIAKYRVTWYSAVPTIH--------------- 102
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
Q +L P+P K R+RF+ S ++PL P VLD
Sbjct: 103 ---------------QILLKTAKPNPG-----------KPPPRLRFIRSASAPLPPAVLD 136
Query: 430 FLKICFGGRVTEGYGMTETSCLIS--QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
L+ FG V E YGMTE + I+ L G VG P A E+ ++D +
Sbjct: 137 RLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRP-AGVEVAILD-------DD 188
Query: 488 DQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
+P P GEI +RGP + GY + +E DGWF TGD+G G L + R
Sbjct: 189 GRPLPPGQEGEIVIRGPNVTAGYLNNPEANRE-AFRDGWFRTGDLGYLDEDGYLFLTGRI 247
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDA 595
K + GE I+ ++E V + V + V+G + + + A V V +
Sbjct: 248 KELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEE 306
Query: 596 LKAWAASEGIQYE 608
L+ +A ++
Sbjct: 307 LRDFARKRLAAFK 319
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 4e-42
Identities = 100/369 (27%), Positives = 147/369 (39%), Gaps = 98/369 (26%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
D ATI +TSG+TG PK V + GN +AS G+ P D ++ LPL H+
Sbjct: 77 DRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV------ 130
Query: 316 VMTVYSGVAV---GFYQGDNMKLMD---------DMAALRPTVFCSVPRLYNRIYAGITS 363
SG+A+ G + L D + T VP R+
Sbjct: 131 -----SGLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRL------ 179
Query: 364 AVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
L + + A+L LGG +P+
Sbjct: 180 -------LESLGARWLSSLR--AVL--------------------LGG---------API 201
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQL-----DEGDNLSGHVGSPNAACEIKLVD 478
P +L+ + G + YGMTET+ SQ+ D+ G VG P E+++V+
Sbjct: 202 PPSLLEQAR-QRGIPLYPTYGMTETA---SQVATLKPDDFLAKLGSVGKPLPGRELRIVN 257
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ GEI VRGP +F GY T + DEDGWFHTGD+G G L
Sbjct: 258 PQD------------GEILVRGPSLFLGYLPQGGLTPPL-DEDGWFHTGDLGYLDAEGYL 304
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV-----S 590
++ R+ ++ ++ GE I E+IE V + V + V G D + VA V
Sbjct: 305 YVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDP 363
Query: 591 VDQDALKAW 599
V + L+A+
Sbjct: 364 VSVEELQAF 372
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 2e-40
Identities = 95/324 (29%), Positives = 138/324 (42%), Gaps = 58/324 (17%)
Query: 251 SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310
+ KPDD A I +TSG+ G PKG VLSH NL+A++ DV + LPL H +
Sbjct: 140 AGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAF 199
Query: 311 E-RANQVMTVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
++ + +G+ V +Y D K+ + + + T+ C P R YA
Sbjct: 200 GLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFL-RGYAR------- 251
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
NA + S RLV +GA L
Sbjct: 252 -------------NAHPE-DFSSL-------RLVV---------------AGAEKLPEAT 275
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ + FG R+ EGYG TE S +IS N G VG P E+++V
Sbjct: 276 RELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPETH----- 330
Query: 488 DQPCPRGE---ICVRGPLIFKGYYKDEIQTKEV-IDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ P GE + VRGP + GY +E +T EV + DGW+ TGDIG G L I+ R
Sbjct: 331 -EELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGR 389
Query: 544 KKNIFKLAQGEYIAAEKIENVYAK 567
K K+ GE ++ +E + ++
Sbjct: 390 LKRFAKIG-GEMVSLTAVEELLSE 412
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 4e-40
Identities = 105/475 (22%), Positives = 162/475 (34%), Gaps = 98/475 (20%)
Query: 133 HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192
GI GS + L N E +++ HAC L L + + VQ +
Sbjct: 19 QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTD 78
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
S L E Q + + + GR +
Sbjct: 79 --------SLLEE-----------------------KDFQADSLDRIEAAGRYETSLSAS 107
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
D +AT+ +TSGTTG PK + N AS G+ F D ++ LPL HI
Sbjct: 108 FNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGL 167
Query: 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
+ + G + N +L++ +A R T VP NR+
Sbjct: 168 SILFRWLIEGATLRIVDKFN-QLLEMIANERVTHISLVPTQLNRL------LDEGGHNEN 220
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK 432
R LGG S + +++
Sbjct: 221 LRKI-------------------------------LLGG---------SAIPAPLIE-EA 239
Query: 433 ICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+G + YGMTET ++ E + VG P A EIK+ D
Sbjct: 240 QQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKI---------KVDNKE 290
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
GEI V+G + KGY + ++ GWF+TGDIG G L ++ R+ ++ ++
Sbjct: 291 GHGEIMVKGANLMKGYLYQG-ELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLI-IS 348
Query: 552 QGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIVS----VDQDALKAW 599
GE I E+IE V + + + V + VA + + Q L A+
Sbjct: 349 GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDISQAKLIAY 403
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 8e-39
Identities = 108/473 (22%), Positives = 160/473 (33%), Gaps = 131/473 (27%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYGE A + + L G+ G + N E+++V AC+ + P+
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ +I+ A + +F VP G D ++P
Sbjct: 62 ERELGFILRQARARVLF-VPDEF-------------------RGFD--YAAMP------- 92
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
DDVA + YTSGTTG PKG + +H L+A V
Sbjct: 93 ----------------------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLG 130
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ----GDNMKLMDD---------MA 340
P DV + PLAHI +G G G + L D +
Sbjct: 131 LTPDDVVLMPSPLAHI-----------TGFLYGLELPLLLGATVVLQDRWDPARALELIR 179
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
T A + +A +G L
Sbjct: 180 EHGVTFTMGATPF----LADLLAAADAAGPDLPSL------------------------- 210
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL--DEG 458
R G +P+ ++ G +V YGMTE + D
Sbjct: 211 -------------RVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPD 257
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTK 515
D + G P E+++VD + P GE+ VRGP +F GY D
Sbjct: 258 DKRAATDGRPVPGVEVRIVD-------DDGNDVPPGEEGELQVRGPQLFLGYL-DPPDNT 309
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKC 568
E +DGWF TGD+G G L+I RKK+I + GE I+A +IE++ +
Sbjct: 310 EAFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRH 361
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 8e-38
Identities = 109/432 (25%), Positives = 166/432 (38%), Gaps = 88/432 (20%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L P+ + YI+NHA + +F L L + V + D P T+
Sbjct: 84 LSPEQIAYIINHAEDKVIFVDD----DFLPLLEAIAPRLPTVKAVVVYDDADM-PETSLP 138
Query: 232 QILTYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGA 288
+ Y LL + P + A +CYTSGTTG PKG V SH +L+ +
Sbjct: 139 NVYAYEELLEEESPEY--EWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASAL 196
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG---FYQGDNMK---LMDDMAAL 342
SD + +P+ H N Y+ VG G + L+D +
Sbjct: 197 PDSLGLSESDTVLPVVPMFH----VNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEEE 252
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
+ TV VP ++ GL L A + + S +
Sbjct: 253 KVTVSAGVPTIWL--------------GLLNYL-----EANGKDLSSLRR---------- 283
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS--------- 453
+ G S L +++ L+ G V +GMTETS L +
Sbjct: 284 -------------VVVGGSALPRSLIEKLEE-RGVEVIHAWGMTETSPLGTVSRLKPHLV 329
Query: 454 --QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKG 506
+E L G P E+++VD E P GE+ VRGP +
Sbjct: 330 DLPEEEKLELRAKQGRPVPGVELRIVD-------DEGNELPWDGKTVGELVVRGPWVTGS 382
Query: 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566
YYKD +T+E+ DGWF TGD+ + G ++I DR K++ K + GE+I++ ++EN
Sbjct: 383 YYKDPEKTEEL-TRDGWFRTGDVAVIDEDGYIQITDRAKDVIK-SGGEWISSVELENALM 440
Query: 567 KCKFVGQCFVYG 578
V + V G
Sbjct: 441 AHPAVAEAAVVG 452
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-37
Identities = 65/167 (38%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
+R + SGA+PLS ++ + L+ F + +GYGMTET + GD G VG
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E K+VD ++ RGE+CV+GP I KGY + TKE IDEDGW HTGDIG
Sbjct: 325 VEAKIVDEDGGKSLGPNE---RGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGY 381
Query: 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ G I+DRKK + K + AE +E V + V V G
Sbjct: 382 FDEDGNFYIVDRKKELIKYKGYQVPPAE-LEAVLLEHPKVADAAVIG 427
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 5e-37
Identities = 100/331 (30%), Positives = 139/331 (41%), Gaps = 64/331 (19%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG +L+H L+ + A P DV ++ LPL HI Q
Sbjct: 82 DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI---NAQA 138
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376
+VY+ + VG L P F S R +++ VR G +F
Sbjct: 139 YSVYAALLVG-----------ATLVLLPR-F-SASRFWDQ--------VRKHGA---TVF 174
Query: 377 NAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
N AM + K P DR +RF+ PL + +
Sbjct: 175 NLL-----GAMAAILMKQPPSPDDR----------DHPLRFVFGA--PLPAAIWPAFEER 217
Query: 435 FGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP- 492
FG ++ EGYGMTET I + GD G G P E+++VD + + P
Sbjct: 218 FGVKLVEGYGMTETGVPI--IAPGDPAPPGSCGRPRPGVEVRIVD-------EDGREVPP 268
Query: 493 --RGEICVR---GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
GE+ VR +FKGYY T + +GWFHTGD G G L +DRKK+
Sbjct: 269 GEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDEDGFLYFVDRKKDA 327
Query: 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ +GE I++ ++E V + V
Sbjct: 328 IR-RRGENISSYEVEAAILAHPAVAEAAVVA 357
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 4e-36
Identities = 99/316 (31%), Positives = 139/316 (43%), Gaps = 82/316 (25%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-----TLGTKFYPSDVYISYLPLA 307
P PDDVA I YTSGTTG PKGA L+H NL A+ A LG + ++ LP+
Sbjct: 216 PTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG---PERVLAALPMF 272
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNMKL---------MDDMAALRPTVFCSVPRLYNRIY 358
H Y +T+ + + G + L +D M PT VP LY +I
Sbjct: 273 HAYG-----LTL--CLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIA 325
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAM-LSGKNPSPMWDRLVFNKIKDKLGGRVRFMG 417
A+++ + LSG VR
Sbjct: 326 EA---------------------AEERGVDLSG----------------------VRNAF 342
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS-----GHVGSPNAAC 472
SGA L ++ + GG + EGYG+TETS +I G+ +S G+VG P
Sbjct: 343 SGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIV----GNPMSDDRRPGYVGVPFPDT 398
Query: 473 EIKLVDVPEMNYTSEDQP-CPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E+++VD PE E P GE+ VRGP +FKGY+ +T + DGWF TGD+ +
Sbjct: 399 EVRIVD-PED--PDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVV 454
Query: 532 WIPGGRLKIIDRKKNI 547
G ++I+DR K +
Sbjct: 455 MEEDGFIRIVDRIKEL 470
|
Length = 573 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 8e-34
Identities = 111/391 (28%), Positives = 172/391 (43%), Gaps = 80/391 (20%)
Query: 207 PTVRLIV--VIGGIDDQIP--SLPITTGVQILTYSNLLSQGRSNLQPFSP--PKPDDVAT 260
P RL++ V+ + +P LP Q + +++ L++G QP + P+ DDVA
Sbjct: 159 PLKRLLINAVVKHVKKMVPAYHLP-----QAVKFNDALAKGAG--QPVTEANPQADDVAV 211
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVA------GATLGTKFYPSDVYISYLPLAHIYERAN 314
+ YT GTTG KGA+L+H NL+A++ G+ L ++ I+ LPL HI
Sbjct: 212 LQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEG---CEILIAPLPLYHI----- 263
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR-- 372
Y+ F M M + S PR + + V+ G +
Sbjct: 264 -----YA-----F----TFHCMAMMLIGNHNILISNPR-------DLPAMVKELGKWKFS 302
Query: 373 -----ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
LF A N + + +L F+ +K L SG L
Sbjct: 303 GFVGLNTLFVALCNNEA------------FRKLDFSALKLTL--------SGGMALQLAT 342
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ K G + EGYGMTETS ++S G +G P + K++D + N
Sbjct: 343 AERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNELPL 401
Query: 488 DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
+ GE+CV+GP + KGY++ T E++D DGW TGDI + G ++I+DRKK++
Sbjct: 402 GEV---GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDM 458
Query: 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
L G + ++E+V A V QC G
Sbjct: 459 I-LVSGFNVYPNELEDVLAALPGVLQCAAIG 488
|
Length = 562 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-33
Identities = 128/518 (24%), Positives = 199/518 (38%), Gaps = 79/518 (15%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
T+ E + L G+ G + + +NR E++ A + I+VP+ L
Sbjct: 43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P + ++V+ V + VP + +VV GG D +
Sbjct: 103 PPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDD----------SV 152
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
L Y +LL++ P P D A I YTSGTTG PKGAVL+H NL
Sbjct: 153 LGYEDLLAEAGPAHAPVDIPN-DSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNG 211
Query: 294 -FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFY---QGDNMKLMDDMAALRPT-VFC 348
SDV +PL HI + + + G Y D +L+D + A + T +F
Sbjct: 212 ADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFL 271
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
VP A+ QA+ + + P L
Sbjct: 272 -VP------------------------------AQWQAVCAEQQARPRDLAL-------- 292
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLS--GHV 465
R + GA+P S +L + F ++ +G TE S + L D + G V
Sbjct: 293 -----RVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV 347
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
G ++VD MN + GEI R P + GY+ + T E GWFH
Sbjct: 348 GKVIPTVAARVVD-ENMNDVPVGEV---GEIVYRAPTLMSGYWNNPEATAEAFA-GGWFH 402
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFN 582
+GD+ G + ++DRKK++ ++ GE I ++ENV A + + V G + +
Sbjct: 403 SGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWG 461
Query: 583 SALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRAR 620
VA+ +V D + E+L + D AR
Sbjct: 462 EVPVAVAAVRNDD-------AALTLEDLAEFLTDRLAR 492
|
Length = 542 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 4e-33
Identities = 130/475 (27%), Positives = 188/475 (39%), Gaps = 107/475 (22%)
Query: 104 VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163
+DG G TY + V +GL GI +G + L N PE+++ S
Sbjct: 43 IDGATGRV--YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGA 100
Query: 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
++ T P F P + +LI+ D++
Sbjct: 101 VTT----TANP---------------FYTPAEIAKQAKASG----AKLIITQSCYVDKLK 137
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFS---------PPK----PDDVATICYTSGTTGT 270
L GV ++T + FS P+ PDDV + Y+SGTTG
Sbjct: 138 GLAEDDGVTVVT----IDDPPEGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGL 193
Query: 271 PKGAVLSHGNLIASVA----GATLGTKFYPSDVYISYLPLAHIYERANQVM--TVYSGVA 324
PKG +L+H L+ SVA G F+ DV + LP+ HIY N V+ + G A
Sbjct: 194 PKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS-LNSVLLCGLRVGAA 252
Query: 325 VGFYQG-DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383
+ + L++ + + T+ VP + I AK
Sbjct: 253 ILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAI------------------------AK 288
Query: 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEG 442
SP+ ++ + I R + SGA+PL ++ D + + +G
Sbjct: 289 ----------SPVVEKYDLSSI--------RMVLSGAAPLGKELEDAFRAKLPNAVLGQG 330
Query: 443 YGMTETS-----CLISQLDEGDNLSGHVGS--PNAACEIKLVDVPEMNYT-SEDQPCPRG 494
YGMTE CL + SG G+ NA E+K+VD PE + +QP G
Sbjct: 331 YGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNA--ELKIVD-PETGASLPRNQP---G 384
Query: 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
EIC+RGP I KGY D T ID+DGW HTGDIG L I+DR K + K
Sbjct: 385 EICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIK 439
|
Length = 537 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 5e-32
Identities = 94/366 (25%), Positives = 147/366 (40%), Gaps = 72/366 (19%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
DDVA I YTSGTTG PKG + +H ++A+ A + + P V +++LPL H+ A
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHV---AGM 140
Query: 316 VMTVYSGVAVGFYQGDNMKLM---DDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
++ + + Y G + L+ D AA R A+
Sbjct: 141 QGSMNAPI----YTGATLVLLTRWDREAAAR--------------------AIERYRV-- 174
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN-KIKDKLGGRVRFMGSGASPLSPDVLDFL 431
N M L+ + + D ++ +G G + L P V + L
Sbjct: 175 ----THWTN-----------IVTMVVDLLAHPRFADYDLSSLKVVGGGGAALPPAVAERL 219
Query: 432 KICFGGRVTEGYGMTET-SCLISQLDEGDNL-SGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
K G EGYG+TET +C + + D +G P + +++D PE T E+
Sbjct: 220 KALTGLLYEEGYGLTETHTC--THFNPPDRPKPQCLGIPVFGTDARVID-PE---TGEEL 273
Query: 490 PCPR-GEICVRGPLIFKGYYKDEIQTKEV---IDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
P GEI VRGP +FKGY+ T E +D +F TGD+G G +DR K
Sbjct: 274 PPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVK 333
Query: 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV--------SVDQD 594
+ G + ++E + + V + V G + A V V ++
Sbjct: 334 RMIN-VSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEE 392
Query: 595 ALKAWA 600
+ W
Sbjct: 393 DIIEWC 398
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 1e-31
Identities = 126/501 (25%), Positives = 193/501 (38%), Gaps = 94/501 (18%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
E K +T+ E A V L G+ KG + L N E ++V HA ++V L
Sbjct: 24 EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLN 83
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
L + + + ++ A V+ + L
Sbjct: 84 TRLSREELLWQLDDAEVKCLITDDDFEAKL-----------------------------I 114
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+ ++ L++ + + D+VATI YTSGTTG PKG + ++GN S G+
Sbjct: 115 PGISVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSA 174
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFC 348
L D +++ +P+ HI + + +V G+ V + D K+ + T+
Sbjct: 175 LNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIIS 234
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
V + R L ERL Y + + ML G P+P
Sbjct: 235 VVSTMLQR--------------LLERLGEGTYPSSFRCMLLGGGPAP------------- 267
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKIC--FGGRVTEGYGMTETSCLISQLDEGDNLS--GH 464
L+ C G V + YGMTET+ I L D L+ G
Sbjct: 268 -------------------KPLLEQCKEKGIPVYQSYGMTETASQIVTLSPEDALTKLGS 308
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
G P CE+K+ P GEI V+GP + KGY E T+E +DGWF
Sbjct: 309 AGKPLFPCELKIEK-----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWF 362
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSF 581
TGDIG G L ++DR+ ++ ++ GE I +IE V V + V G D +
Sbjct: 363 KTGDIGYLDEEGFLYVLDRRSDLI-ISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKW 421
Query: 582 NSALVAIV----SVDQDALKA 598
VA V V ++ L+
Sbjct: 422 GQVPVAFVVKSGEVTEEELRH 442
|
Length = 483 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-31
Identities = 104/328 (31%), Positives = 141/328 (42%), Gaps = 78/328 (23%)
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT--KFYPSDVYISYLPLAHI 309
P DD+A I YTSGTTG KGA+LSHGNL S A TL +F P DV I LP+ H
Sbjct: 152 PRGADDLAAILYTSGTTGRSKGAMLSHGNL-LSNA-LTLVDYWRFTPDDVLIHALPIFHT 209
Query: 310 YERANQVMTVYSGVAVGFYQGDNM----KL-MDDMAALRP--TVFCSVPRLYNRIYAGIT 362
+ + V + VA+ G +M K D + AL P TV VP Y R
Sbjct: 210 HG-----LFVATNVAL--LAGASMIFLPKFDPDAVLALMPRATVMMGVPTFYTR------ 256
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+L P R + +R SG++P
Sbjct: 257 ------------------------LLQ----EPRLTR--------EAAAHMRLFISGSAP 280
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
L + + G + E YGMTET+ S +G+ +G VG P +++ D PE
Sbjct: 281 LLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTD-PE- 338
Query: 483 NYTSEDQPCPRGEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539
P GEI V+GP +FKGY++ +T E DG+F TGD+G G +
Sbjct: 339 ----TGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVH 394
Query: 540 IIDRKKNIFKLAQGEYIAAEKIENVYAK 567
I+ R K++ + G Y NVY K
Sbjct: 395 IVGRGKDL--IISGGY-------NVYPK 413
|
Length = 504 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 8e-31
Identities = 76/323 (23%), Positives = 123/323 (38%), Gaps = 72/323 (22%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
DVA + GTTG PK +H + + S + P VY++ LP AH N
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAH-----N-- 192
Query: 317 MTVYSGVAVG-FYQGDNMKLMDD---MAAL------RPTVFCSVPRLYNRIYAGITSAVR 366
T+ S +G G + L A + T VP L N
Sbjct: 193 FTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLE------- 245
Query: 367 TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
+ WD+ +R + G +PLSP+
Sbjct: 246 ---------------------------AAEWDQADL--------SSLRVIQVGGAPLSPE 270
Query: 427 VLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH-VGSP-NAACEIKLVDVPEMNY 484
+ ++ G + + +GM E ++LD+ ++ G P + A EI++VD
Sbjct: 271 LARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRIVDD----- 325
Query: 485 TSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
+ +P P GE+ RGP +GYY+ +DG++ TGD+ G +++
Sbjct: 326 --QGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVV 383
Query: 542 DRKKNIFKLAQGEYIAAEKIENV 564
R K+ GE I+ E+IEN+
Sbjct: 384 GRIKDQINRG-GEKISPEEIENL 405
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-30
Identities = 79/295 (26%), Positives = 115/295 (38%), Gaps = 38/295 (12%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD+A +T GTTG PK A SH N +A+ A L + P DV ++ LPL H
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFH------ 54
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
V +G + L P V + ++ R + SAV T
Sbjct: 55 -VGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPT------- 106
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
A Q L + S + R+ +GA+PL +V +
Sbjct: 107 ----VLAALLQVPLGDADISSL-----------------RYALTGAAPLPVEVARRFEAV 145
Query: 435 FGGRVTEGYGMTETSCLIS-QLDEGDNLSGHVGSPNAACEIKLVDV-PEMNYTSEDQPCP 492
G V EGYGMTE + + + G G VG +++ + + P
Sbjct: 146 TGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGE 205
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
G + +RGP +F GY D EDGW +TGD+G G L + R K++
Sbjct: 206 VGVLAIRGPNVFPGYLNDA-HNAGARLEDGWLNTGDLGRIDADGYLWLTGRAKDL 259
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-30
Identities = 107/360 (29%), Positives = 163/360 (45%), Gaps = 70/360 (19%)
Query: 236 YSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTTGTPKGAVLSHGNLIASVA--GATLG 291
+++ L++G Q F P K PDDVA + YT GTTG KGA L H N++A+V A L
Sbjct: 184 FNDALAEGAR--QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQ 241
Query: 292 TKF--YPSD---VYISYLPLAHIYE-RANQVMTVYSGVAVGFYQGDNMKLMD--DMAA-- 341
F P ++ LPL HI+ ++ + +G G N+ + + D+
Sbjct: 242 PAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTG-------GRNILIPNPRDIPGFI 294
Query: 342 --LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
L+ P AV T L+NA N +P +D+
Sbjct: 295 KELKKYQVHIFP------------AVNT-------LYNALLN------------NPDFDK 323
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS-CLISQLDEG 458
L F+K+ GG G + P +L++ G +TEGYG++ETS +
Sbjct: 324 LDFSKLIVANGG-------GMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDA 375
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SG +G P + E+ + D + N +P GEIC+RGP + GY+ +T +V+
Sbjct: 376 TEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEP---GEICIRGPQVMAGYWNRPDETAKVM 431
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
DG+F TGD+G+ G KI+DRKK++ L G + +IE V A V + G
Sbjct: 432 TADGFFRTGDVGVMDERGYTKIVDRKKDMI-LVSGFNVYPNEIEEVVASHPGVLEVAAVG 490
|
Length = 557 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 3e-30
Identities = 97/474 (20%), Positives = 157/474 (33%), Gaps = 107/474 (22%)
Query: 105 DGTVGEYKWMTYGE--AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162
DG G ++ +TYG+ AR + + L G KG + +Y N PE +I A +
Sbjct: 32 DGEDGLFRELTYGDLRREVAR--LANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIG 89
Query: 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQI 222
I + L +AV + + + T + L+ D +
Sbjct: 90 AIPAVVSPGLSAEAVADRIADLGPKVLIADDGTF-------RNGKEIALLEDA----DAV 138
Query: 223 PSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
S + L Y + + + P DD + YTSGTTG PKG V SHG +
Sbjct: 139 LSSVVVVPRLGLWYDEAVEKASEKFEFE-PLPADDPLFLLYTSGTTGKPKGIVHSHGGYL 197
Query: 283 ASVAGATL--------GTKFYPSDV-------YISYLPLAH-----IYERANQVMTVYSG 322
+ SD Y + PLA +Y+
Sbjct: 198 VEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGR--------- 248
Query: 323 VAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNA 382
FY + + + + + T+F + P R+
Sbjct: 249 ---PFYSPERL--WEALEKYKVTIFGTSPTFLRRL------------------------- 278
Query: 383 KKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEG 442
K + + S +R +GS PL+P+ ++ G + +
Sbjct: 279 MKLGLGEPYDLSS-----------------LRVLGSAGEPLNPEAFEWFYSALGVWILDI 321
Query: 443 YGMTET-SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVR 499
YG TET I+ +G G P ++ VD E P P GE+ VR
Sbjct: 322 YGQTETGMGFIAGRPPV--KNGSSGLPLPGYAVRRVD-------DEGNPVPPGVGELVVR 372
Query: 500 G--PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
P + Y+ D + KE W+ TGD G + R ++ K++
Sbjct: 373 LPWPGMALTYWNDPERYKEAY-FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVS 425
|
Length = 528 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 5e-29
Identities = 124/539 (23%), Positives = 191/539 (35%), Gaps = 128/539 (23%)
Query: 139 SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS 198
I L N +W+I D AC + +P+ ++++N A +
Sbjct: 25 KRIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLIS------- 77
Query: 199 LLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDV 258
DD + + T L ++ S P
Sbjct: 78 --------------------DDPDAASALHTPFATLGEDLYIALRPS---ANPVELPAGT 114
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIA---SVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
A I YTSG+TG PKG LS L S+A A + + ++ LPLA + E
Sbjct: 115 AKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILE---PERHLCLLPLATLLENIAG 171
Query: 316 V-MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
V + G V + L + L P F A ++ S L +
Sbjct: 172 VYAPLLMGATVILVPLAELGLSGS-SGLDPAQFV----------AALSRWQPHSLILVPQ 220
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL---DFL 431
L A A +Q L +RF+ G + +SP +L L
Sbjct: 221 LLMALVAAVEQGPL--------------------PPESLRFVAVGGARVSPSLLQRARAL 260
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+ V EGYG++E + ++S G + G VG P ++ + + D
Sbjct: 261 GL----PVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSI---------AND--- 304
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
GEI VRG L GY + T D W+ TGD+G G L I RKKN+ +
Sbjct: 305 --GEILVRGSL-MLGYLGEPPAT------DDWWATGDLGHLDEEGYLYINGRKKNLIITS 355
Query: 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVS-VDQDALKAWAASEGIQYE 608
G ++ E +E+ + + Q V+GD+ F AL+ + D L+A
Sbjct: 356 FGRNVSPEWVESELQQAPAIAQAVVFGDAQPFLVALIVPAPNISDDQLEAAV-------- 407
Query: 609 NLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKR 667
Q N AQL + +K + +PF+ NGLLT + +R
Sbjct: 408 ---QQIN------------------AQLPDYARIKTWVRLRQPFSTANGLLTANGRPRR 445
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 7e-29
Identities = 146/557 (26%), Positives = 227/557 (40%), Gaps = 102/557 (18%)
Query: 74 DHPEIGTTHDNFVRAVDTFRD---YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGL 130
D + T + F +V F D Y G K +TY EA + + L
Sbjct: 20 DLEQFRTVAEVFATSVAKFADRPAYHSFG------------KTITYREADQLVEQFAAYL 67
Query: 131 IYH-GISKGSCIGLYFVNRPEWLIVDHA--CSAYSFISV-PLYDT---------LGPDAV 177
+ + KG + L N ++ I + + ++V PLY G +
Sbjct: 68 LGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVL 127
Query: 178 KYIVNHA-SVQAVFC---VPQTLNSLLSCLSEVPTVRLI-VVIGGIDDQIPSLPITTGVQ 232
I N +VQ V V Q + + L + P L+ V+ + +P I ++
Sbjct: 128 VVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIR 187
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATL 290
+ L+ GR + P +PDD+A + YT GTTG KGA+L+H NL+A++ A L
Sbjct: 188 ---FREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWL 244
Query: 291 GT--KFYP-SDVYISYLPLAHIYE-RANQ-VMTVYSGVAVGFYQGDNMK-LMDDMAALRP 344
K +V I+ LPL HI+ AN V G +M + ++ R
Sbjct: 245 AGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRF 304
Query: 345 TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
T F V L+N L N +P +D++ F+
Sbjct: 305 TAFTGVNTLFNG------------------LLN----------------TPGFDQIDFSS 330
Query: 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLS 462
+K LGG + S V + K G + E YG+TETS I+ L + +
Sbjct: 331 LKMTLGGGMAVQRS--------VAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEY-N 381
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVID 519
G +G P + + + D GEI C++GP + KGY+K +T +V+D
Sbjct: 382 GSIGLPIPSTDACIKD-------DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMD 434
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG- 578
DGW HTGDI G + I+DRKK++ L G + +IE+V A V + G
Sbjct: 435 ADGWLHTGDIARMDEQGFVYIVDRKKDMI-LVSGFNVYPNEIEDVIAMMPGVLEVAAVGV 493
Query: 579 -DSFNSALVAIVSVDQD 594
D + +V +V V +D
Sbjct: 494 PDEKSGEIVKVVIVKKD 510
|
Length = 560 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 4e-28
Identities = 87/363 (23%), Positives = 140/363 (38%), Gaps = 97/363 (26%)
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+++L L S P P +PDD A + TSG+TG PK VL+H N++A AG
Sbjct: 143 ALRVLAIEELRSAPP--DAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTV 200
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVM----TVYSG-----VAVGFYQGDNMKLMDDMA 340
F P DV ++++PL H+ VM VY G V + D ++ +D +
Sbjct: 201 QVNGFTPDDVSLNWMPLDHV---GGIVMLHLRDVYLGCQQIHVPTDYILADPLRWLDLID 257
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
R T+ + P N +A + A+ + WD
Sbjct: 258 RYRVTITWA-P---NFAFALLNDALE------------------------RIEDRSWDL- 288
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVL-DFLKIC--FGGRVT---EGYGMTETSCLIS- 453
+R++ + + + FL++ +G +GM+ET ++
Sbjct: 289 ----------SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTY 338
Query: 454 --QLDEGDNLSGH------------------------VGSPNAACEIKLVDVPEMNYTSE 487
G + G +G P I++VD +
Sbjct: 339 SRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-------ED 391
Query: 488 DQPCPRGEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
P GE+ VRGP + GYY++ E EDGWF TGD+G ++ GRL I R+
Sbjct: 392 GALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLG-FLHDGRLTITGRE 450
Query: 545 KNI 547
K++
Sbjct: 451 KDM 453
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 7e-28
Identities = 105/448 (23%), Positives = 167/448 (37%), Gaps = 82/448 (18%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV- 192
G+ G + N PE A I+ P+ L P+ + ++ A + + +
Sbjct: 79 GVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLG 137
Query: 193 --PQT--LNSLLSCLSEVPTVRLIVVIGGIDD-------QIPSLPITTGVQILTYSNLLS 241
P T + L+ +P +R +V + +P + +IL + L+
Sbjct: 138 PFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELA 197
Query: 242 QGRSN-LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
+ + L P PDDVA +T GTTG PK A +HGN +A+ L P D
Sbjct: 198 RQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTV 257
Query: 301 ISYLPLAHIYERANQVM-TVYSGVAVGF-----YQGDNMKLMDD----MAALRPTVFCSV 350
LPL H+ + + G V Y+G ++ + + R V
Sbjct: 258 FCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPG--VIANFWKIVERYRINFLSGV 315
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P Y A Q + G + S
Sbjct: 316 P--------------------------TVYAALLQVPVDGHDIS---------------- 333
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-QLDEGDNLSGHVGSPN 469
+R+ GA+PL +V + G R+ EGYG+TE +C+ S +G+ G VG
Sbjct: 334 -SLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRL 392
Query: 470 AACEIKLVDV-PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+++V + Y + G +C+ GP +F GY + K + EDGW +TGD
Sbjct: 393 PYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGD 451
Query: 529 IG-------MWIPGGRLK--IIDRKKNI 547
+G W+ GR K II NI
Sbjct: 452 LGRIDADGYFWLT-GRAKDLIIRGGHNI 478
|
Length = 632 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-27
Identities = 60/145 (41%), Positives = 83/145 (57%), Gaps = 14/145 (9%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQ--LDEGDNLSGHVG-- 466
++ +GSGA+PL ++ + + F G + +GYGMTE+S + + + E D G VG
Sbjct: 276 SLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRL 335
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
PN E K+VD PE T E P P GE+ VRGP + KGY + T E ID+DGW
Sbjct: 336 VPNV--EAKIVD-PE---TGESLP-PNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWL 388
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFK 549
HTGD+G + G L I+DR K + K
Sbjct: 389 HTGDLGYFDEDGYLFIVDRLKELIK 413
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 5e-27
Identities = 104/343 (30%), Positives = 162/343 (47%), Gaps = 61/343 (17%)
Query: 234 LTYSNLLSQGRSNLQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATL 290
+++ + L +GR +Q P P+D+A + YT GTTG KGA+L+H N++A++ A A
Sbjct: 184 ISFRSALHKGR-RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAY 242
Query: 291 GTKFYP-SDVYISYLPLAHIYE-RANQVMTVYSGVAVGFYQGDNMKLMD--DMAALRPTV 346
G +P ++ ++ LPL HI+ N ++ + G G N+ + + D+
Sbjct: 243 GPLLHPGKELVVTALPLYHIFALTVNCLLFIELG-------GQNLLITNPRDIPGF---- 291
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
V L + IT V T LFNA N + + L F+ +K
Sbjct: 292 ---VKELKKYPFTAIT-GVNT-------LFNALLN------------NEEFQELDFSSLK 328
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
+GG + V + G + EGYG+TE S L+S +L + G
Sbjct: 329 LSVGG--------GMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPY--DLDYYSG 378
Query: 467 S---PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGW 523
S P + EIKLVD + N +P GE+ V+GP + GY++ T EVI +DGW
Sbjct: 379 SIGLPVPSTEIKLVD-DDGNEVPPGEP---GELWVKGPQVMLGYWQRPEATDEVI-KDGW 433
Query: 524 FHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566
TGDI + G L+I+DRKK++ L G + +IE+V
Sbjct: 434 LATGDIAVMDEEGFLRIVDRKKDMI-LVSGFNVYPNEIEDVVM 475
|
Length = 560 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-26
Identities = 109/464 (23%), Positives = 170/464 (36%), Gaps = 127/464 (27%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI-----VDHACSAYSF 163
GE++ +TY EA + L+ G+S RP +I ++HA A +
Sbjct: 21 GEWRRVTYAEALRQVRAIAQALLDLGLSAE---------RP-LMILSGNSIEHALLALAA 70
Query: 164 ISV--------PLYDTLGPD--AVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRL 211
+ P Y L D +++I + + AVF +L + + V +
Sbjct: 71 MYAGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAAL--GLAGVPV 128
Query: 212 IVVIGGIDDQIPSL------PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ V G + P T V F+ PD VA +TS
Sbjct: 129 VAVRGAPGGPAIAFAALLATPPTAAVD---------------AAFAAVGPDTVAKYLFTS 173
Query: 266 GTTGTPKGAVLSHGNLIASVAG--ATLGTKFYPSDVYISYLPLAHIY-ERANQVMTVYSG 322
G+TG PK + +H L A+ A V + +LP H + N M +Y+G
Sbjct: 174 GSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNG 233
Query: 323 VAVGFYQGDNMK----LMDDMAA-LR---PTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
G D+ K L ++ LR PTV+ +VP+ + + A+ LR R
Sbjct: 234 ---GTLYIDDGKPVPGLFEETLRNLREVSPTVYFNVPKGFEM----LVDALERDAALRRR 286
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL--- 431
F R+R + + L DV D L
Sbjct: 287 FF----------------------------------KRLRLLFYAGAALPQDVWDRLQAL 312
Query: 432 --KICFGGRV--TEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ G R+ T G G TET+ + + + SG +G P E+KLV
Sbjct: 313 AVRTT-GERIPMTSGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV---------- 361
Query: 488 DQPCPRG---EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
P G E+ V+GP + GY++D T E DE+G++ GD
Sbjct: 362 ----PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD 401
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-26
Identities = 118/480 (24%), Positives = 190/480 (39%), Gaps = 84/480 (17%)
Query: 122 ARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
R +G+++ GI +G + L N +L + A S + +P+ L D V YI
Sbjct: 35 QRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYI 94
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
+ A + + V + +++ V +VI S L
Sbjct: 95 LGDAGAKLLL-VDEEFDAI------VALETPKIVIDAAAQA--------------DSRRL 133
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
+QG + P + P D+ + YTSGTT PKG + S+GNL + S+
Sbjct: 134 AQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERL 193
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
+ PL H+ G+AV + G +++ + V ++ R
Sbjct: 194 LVVGPLYHVGAFD------LPGIAV-LWVGGTLRIHREFDP--EAVLAAIER-------- 236
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
RL A+ A MLS P DR + + +GG G
Sbjct: 237 ------------HRL-TCAWMAP--VMLSRVLTVPDRDRFDLDSLAWCIGG-------GE 274
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVD 478
+ DF ++ R + YG+TET + ++ G + G G A EI++ D
Sbjct: 275 KTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD 334
Query: 479 ------VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532
P M GEIC+RGP + KGY+KD +T E WF +GD+G
Sbjct: 335 GAGRWLPPNMK----------GEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYL 383
Query: 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV 589
G L + DRKK++ ++ GE IA+ ++E V + V + V G D + + A+V
Sbjct: 384 DEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVV 442
|
Length = 497 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-26
Identities = 103/462 (22%), Positives = 164/462 (35%), Gaps = 80/462 (17%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TYGE G+ L GI + + + L ++ PE+ + VP+ L P
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
D +Y +N + + + + L L + P +R ++V+G + P L
Sbjct: 92 DDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVG------GAGPGA-----L 140
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGATLG 291
+Y+ L++ L+ + DD+A Y+SG+TG PKG V H +++ + A LG
Sbjct: 141 SYAQLIATAAEELEA-AATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLG 199
Query: 292 TKFYPSDVYISYLPLAHIYERANQV-MTVYSGVAVGFYQG----DNMKLMDDMAALRPTV 346
DV S L Y N + + G D + + +PTV
Sbjct: 200 IT--EDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAV--FATIERYKPTV 255
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
F VP LY AML+
Sbjct: 256 FFGVPTLYA------------------------------AMLAAPEKPERDLS------- 278
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV 465
+R S L ++ K FG + +G G TE + +S G G
Sbjct: 279 -----SLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNR-PGAVKYGTS 332
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDG 522
G P E+KLVD + + GEI VRG GY+ +T+E
Sbjct: 333 GKPVPGYEVKLVD-------EDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETF-VGE 384
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
W TGD G R ++ K G +++ ++E+
Sbjct: 385 WTRTGDKYYRDEDGYYWYCGRSDDMLK-VSGIWVSPFEVEDA 425
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-26
Identities = 103/389 (26%), Positives = 154/389 (39%), Gaps = 110/389 (28%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD+A I ++SG+TG PKG +L+H NL+ ++ + DV++S++PL H
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTH------ 158
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLY----NRIYAGITSAVRTSGG 370
M + G N LM +F P L+ ++ A I S+
Sbjct: 159 -DMGLIGFHLTPTALGINQYLMP------TRLFIRRPLLWLDKASQHRATILSSP----- 206
Query: 371 LRERLFNAAYNAKKQAMLS--GKNPSPMWD----RLVFNKIKDKLGGRVRFMGSGASPLS 424
N Y + +L WD RL+FN GA P+S
Sbjct: 207 ------NFGY----KYLLKHFKTEKIIDWDLSSVRLIFN---------------GAEPIS 241
Query: 425 PDV-LDFLKIC--FGGR---VTEGYGMTETSCLIS------------------------- 453
D+ +FL+ FG R + YG+ E + +S
Sbjct: 242 ADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKII 301
Query: 454 QLDEGDNLSG---HVGSPNAACEIKLVD-----VPEMNYTSEDQPCPRGEICVRGPLIFK 505
++D ++ + VGSP CEI++VD +P+ G I ++G +
Sbjct: 302 EIDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPDRTI---------GHIQIKGDNVTS 352
Query: 506 GYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN-IFKLAQGEYIAAEKIENV 564
GYY + TK+ I DGW TGD+G ++ GRL I R K+ I Q Y IE V
Sbjct: 353 GYYNNPEATKKSITPDGWLKTGDLG-FLRNGRLVITGRAKDIIIVNGQNYY--PHDIERV 409
Query: 565 YAK---CKF--VGQCFVYGDSFNSALVAI 588
+ K V C VY + S V I
Sbjct: 410 AEQVEGIKLGRVAACGVYDEKEQSEEVVI 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 6e-26
Identities = 136/511 (26%), Positives = 210/511 (41%), Gaps = 89/511 (17%)
Query: 75 HPEIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH 133
HP + D + AV F + + G +D + G ++Y E + +GL YH
Sbjct: 29 HPPVPLPSDPNLDAVSFIFSHHNHNGDTALIDSSTGFS--ISYSELQPLVKSMAAGL-YH 85
Query: 134 --GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191
G+ +G + L N + ++ A + I + + +K V SV F
Sbjct: 86 VMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFT 145
Query: 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFS 251
P+ + L VP + + D + P + L+ + P
Sbjct: 146 SPENVEKLSPL--GVPVI-GVPENYDFDSKRIEFP--------KFYELIK-EDFDFVPKP 193
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF------YPS--DVYISY 303
K DDVA I Y+SGTTG KG VL+H NLIA V L +F YP +VY++
Sbjct: 194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVE---LFVRFEASQYEYPGSDNVYLAA 250
Query: 304 LPLAHIYERANQVMTVYS-GVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
LP+ HIY + V+ + S G + F D +K++D + T F VP I
Sbjct: 251 LPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVID---RFKVTHFPVVPP----IL 303
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
+T + G V +K +
Sbjct: 304 MALTKKAKGVCGE-----------------------------VLKSLKQ--------VSC 326
Query: 419 GASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH--VG--SPNAACE 473
GA+PLS + DF++ +GYGMTE++ + ++ + LS + VG +PN +
Sbjct: 327 GAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNM--Q 384
Query: 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
K+VD + P GE+ ++GP + KGY + T+ ID+DGW TGDI +
Sbjct: 385 AKVVD---WSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFD 441
Query: 534 PGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
G L I+DR K I K +G IA +E V
Sbjct: 442 EDGYLYIVDRLKEIIKY-KGFQIAPADLEAV 471
|
Length = 560 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 7e-26
Identities = 85/370 (22%), Positives = 124/370 (33%), Gaps = 87/370 (23%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP----LAHIY 310
PDD+A I +TSG+TG PKG +SH NL + + DV+ + P L+
Sbjct: 96 PDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAPFSFDLS--- 152
Query: 311 ERANQVMTVYSGVAVG--------FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
V ++ +A G D + L + + TV+ SVP
Sbjct: 153 -----VFDLFPALASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVP--------SFA 199
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
S + S L PS R F G
Sbjct: 200 SLLLLSRELNPESL----------------PSL---RTFL------------FCGE---V 225
Query: 423 LSPDVLDFLKICF-GGRVTEGYGMTET--SCLISQLDE---GDNLSGHVGSPNAACEIKL 476
L + L+ F R+ YG TE + ++ N +G P +
Sbjct: 226 LPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALI 285
Query: 477 VDVPEMNYTSEDQ----PCPRGEICVRGPLIFKGYYKDEIQTKEVIDED---GWFHTGDI 529
+D ED P GE+ + GP + GY + +T + +D W+ TGD+
Sbjct: 286 LD--------EDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDL 337
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV---YGDSFNSALV 586
G L + RK KL G I E+IE V + V LV
Sbjct: 338 VYLEDDGLLVYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLV 396
Query: 587 AIVSVDQDAL 596
A V + AL
Sbjct: 397 AFVVGKEGAL 406
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 118/485 (24%), Positives = 179/485 (36%), Gaps = 100/485 (20%)
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA-SVAG-AT 289
LT L + + PDD IC+TSGTTG PKG +SH LI S+A A
Sbjct: 148 SFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAI 207
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKL-MDDMAALRPTVFC 348
+G + DVY+ PL HI ++ + + G + K + + T
Sbjct: 208 VG--YGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMI 265
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
+VP + A + S R S K
Sbjct: 266 TVP----AMMADLISLTRKSMT------------------------------------WK 285
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTET-----------------SC 450
+ VR + +G LS +L K F ++ YGMTE
Sbjct: 286 VFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQ 345
Query: 451 LISQLDEGDNLSGH------VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIF 504
+ +++ + S H VG P E+K+ D+ G I RGP +
Sbjct: 346 TLQTVNQTKSSSVHQPQGVCVGKPAPHVELKI---------GLDESSRVGRILTRGPHVM 396
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
GY+ +T V+ DGW TGDIG WI G L +I R + K GE + E++E
Sbjct: 397 LGYWGQNSETASVLSNDGWLDTGDIG-WIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEA 454
Query: 564 VYAKCKFVGQCFVYG--DS-FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRAR 620
V ++ V V G DS +VA V + +D W+ +E + L ++
Sbjct: 455 VLSQHPGVASVVVVGVPDSRLTEMVVACVRL-RDGWI-WSDNEKENAKKNLTLSSE---- 508
Query: 621 AAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIAD 680
+ RE L F+ K +PF LT T KI+R + ++ +
Sbjct: 509 -----TLRHHCREKNLSRFKIPKLFVQWRKPFP-----LTTTGKIRRDEVRREVLSHLQS 558
Query: 681 MYAEL 685
+ + L
Sbjct: 559 LPSNL 563
|
Length = 563 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 4e-25
Identities = 82/380 (21%), Positives = 132/380 (34%), Gaps = 91/380 (23%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIA---SVAGATLGTKFY----PSDVYISYLPLA 307
DD+A I YTSG+TG PKG +LSH NL A S+A Y D ++ LP +
Sbjct: 1 DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQ-------YLELTEDDRILAVLPFS 53
Query: 308 HIYERANQVMTVYSG--VAVGF---YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
Y + + G + + + D ++ +A R T F VP +
Sbjct: 54 FDYGLSQLLTAFRVGGTLVLESRFAFPRD---VLKHLAKERITGFAGVPTTW-------- 102
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+L + +R++ +
Sbjct: 103 ----------------------AQLLRLDPLARE------------DFPSLRYLTNAGGA 128
Query: 423 LSPDVLDFLKICF-GGRVTEGYGMTE-TSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
L + L+ F ++ YG+TE +E D +G E+ +VD
Sbjct: 129 LPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVELWVVD-- 186
Query: 481 EMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDE-----DGWFHTGDIGMW 532
+ C GE+ RG + KGY+ D T E + + +TGD+
Sbjct: 187 -----EDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRM 241
Query: 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV 589
G L + RK ++ K G ++ +IE V V + V G A+VA+V
Sbjct: 242 DEEGYLYFVGRKDDMIKTR-GYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVV 300
Query: 590 ------SVDQDALKAWAASE 603
S+D+ L
Sbjct: 301 VSADGESLDEKELLKHCRKH 320
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-25
Identities = 76/299 (25%), Positives = 121/299 (40%), Gaps = 75/299 (25%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVA--GATLGTKFYPSD--VYISYLPLAHIY 310
PD +A +TSG+TG PK + +H L A+ T F + V + +LP H +
Sbjct: 208 PDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFP--FLAEEPPVLVDWLPWNHTF 265
Query: 311 -ERANQVMTVYSGVAVGFYQGDNMK----LMDDM-AALR---PTVFCSVPRLYNRIYAGI 361
N + +Y+G G D+ K D+ LR PTV+ +VP+ + +
Sbjct: 266 GGNHNLGIVLYNG---GTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKG----WEML 318
Query: 362 TSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS 421
A+ LR R F R++ + +
Sbjct: 319 VPALERDAALRRRFF----------------------------------SRLKLLFYAGA 344
Query: 422 PLSPDVLDFL-----KICFGGRV--TEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEI 474
LS DV D L C G R+ G GMTET+ + + +G++G P CE+
Sbjct: 345 ALSQDVWDRLDRVAEATC-GERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEV 403
Query: 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
KLV V + E+ V+GP + GY++ T E DE+G++ +GD ++
Sbjct: 404 KLVPV-------GG----KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFV 451
|
Length = 614 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 5e-25
Identities = 122/487 (25%), Positives = 195/487 (40%), Gaps = 87/487 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y + ++ L G+ G + L + E+++ A S + VPL D
Sbjct: 44 ISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPAL 102
Query: 174 PDAVKYI-VNHASVQAVFCVPQTLNSLLSCLSEVPTVR---LIVVIGGIDDQIPSLPITT 229
P A + + A + V +++ PT R L V +GG
Sbjct: 103 PIAEQRVRSQAAGARVVL-----IDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVH 157
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
L + + S + +PDD A I +T GTTG PK +H N+ +SV
Sbjct: 158 ----LDAATEPTPATSTPEGL---RPDD-AMIMFTGGTTGLPKMVPWTHANIASSVRAII 209
Query: 290 LGTKFYPSDVYISYLPLAHIYER-ANQVMTVYSGVAV-----GFYQGDNMKLMDDMAALR 343
G + P D ++ +PL H + A + T+ SG AV G + DD+ A+
Sbjct: 210 TGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHT--FWDDIKAVG 267
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
T + +VP ++ +I L ER A + SG+ P+ +
Sbjct: 268 ATWYTAVPTIH-QI-------------LLER-------AATEP--SGRKPAAL------- 297
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE-----TSCLISQLDEG 458
RF+ S ++PL+ + L+ F V +GMTE T+ I + +
Sbjct: 298 ----------RFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQT 347
Query: 459 DN---LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEI 512
+N +G VG A +I++V S+ P P GE+ +RG + +GY D
Sbjct: 348 ENPVVSTGLVGRSTGA-QIRIVG-------SDGLPLPAGAVGEVWLRGTTVVRGYLGDPT 399
Query: 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVG 572
T DGW TGD+G G L I R K + GE I+ E++E V A V
Sbjct: 400 ITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVM 457
Query: 573 QCFVYGD 579
+ V+G
Sbjct: 458 EAAVFGV 464
|
Length = 534 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-25
Identities = 93/332 (28%), Positives = 128/332 (38%), Gaps = 65/332 (19%)
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
RS + P PD A I YTSGTTG PKG VLS + A + ++ DV +
Sbjct: 116 ARSWHRYPEPD-PDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVH 174
Query: 303 YLPLAHIY----------ERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPR 352
LPL H++ N+ + + Q + T++ VP
Sbjct: 175 GLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPT 225
Query: 353 LYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGR 412
+++RI A +A G RL LV
Sbjct: 226 VWSRIAADPEAARALRGA---RL------------------------LV----------- 247
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472
SG++ L V D L G R E YGMTET +S +G+ G VG P A
Sbjct: 248 -----SGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGV 302
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532
E +LVD + + GE+ VRGP +F GY T DGWF TGD+ +
Sbjct: 303 ETRLVDEDGGPVPHDGETV--GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVV 360
Query: 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
P G +I+ R+ + G I A +IE
Sbjct: 361 DPDGMHRIVGRESTDLIKSGGYRIGAGEIETA 392
|
Length = 471 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-23
Identities = 99/416 (23%), Positives = 160/416 (38%), Gaps = 83/416 (19%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L ++ +++ H + + + L+ +P + +V ID P P +
Sbjct: 102 LDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLV----IDVDDPEYPGGRFI 157
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH-GNLIASVAGATL 290
L Y L+ G + P D + YTSGTTG PKG V H G + +++ L
Sbjct: 158 GALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSN-IL 216
Query: 291 GTKFYPSDVYISYLPLAHIYERANQ-----VMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
VY+ LP+ H N + +G V + D + D + T
Sbjct: 217 AWGMPKHPVYLWTLPMFH----CNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVT 272
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405
+C P + + A NA +
Sbjct: 273 HYCGAPIVLS----------------------ALINAPAEW------------------- 291
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET---SCLISQLDEGDNLS 462
+ + V M +GA+P V+ ++ G +T YG+TET + + + E D L
Sbjct: 292 RAGIDHPVHAMVAGAAP-PAAVIAKME-EIGFDLTHVYGLTETYGPATVCAWQPEWDALP 349
Query: 463 --------GHVGSPNAACE-IKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYY 508
G E + ++D M QP P GEI RG ++ KGY
Sbjct: 350 LDERAQLKARQGVRYPLQEGVTVLDPDTM------QPVPADGETIGEIMFRGNIVMKGYL 403
Query: 509 KDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
K+ T+E GWFHTGD+ + P G +KI DR K+I ++ GE I++ ++E+V
Sbjct: 404 KNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDII-ISGGENISSIEVEDV 457
|
Length = 545 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-23
Identities = 104/486 (21%), Positives = 158/486 (32%), Gaps = 134/486 (27%)
Query: 115 TYGE--AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
TY E R + L G+S G + L + PE + AC ++V L L
Sbjct: 12 TYRELHDLANRF--ANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLL 69
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
P +++I +DD +L +T
Sbjct: 70 TPQDLEHI-------------------------------------LDDSGAALLVT---- 88
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGAT 289
+ DD+A YTSGTTG PKG + H + + A
Sbjct: 89 ---------------------EADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFAREL 127
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG--DNMKLMDDMAALRPTV 346
LG + P D S L Y N ++ ++SG + G ++D +A RPTV
Sbjct: 128 LGLQ--PGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTV 185
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
VP LY A+ SG LF
Sbjct: 186 LFGVPALYR--------ALLESGAGSAPLF------------------------------ 207
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
VR S L + + G + +G G TE + G G G
Sbjct: 208 ----RSVRLCVSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTG 263
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526
P E +LVD G++ VRGP + GY+ +T+ + DGW T
Sbjct: 264 RPVPGYEARLVD-ESGREVPAGTV---GDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRT 318
Query: 527 GDI------GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS 580
GD G + GR ++ K++ G++++ ++E + V + V
Sbjct: 319 GDRFSRDADGWYRYQGRA------DDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVP 371
Query: 581 FNSALV 586
LV
Sbjct: 372 DEDGLV 377
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 6e-23
Identities = 93/351 (26%), Positives = 127/351 (36%), Gaps = 88/351 (25%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A YTSGTTG PK A++SH + + A P DV LPL H
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHS------- 134
Query: 317 MTVYSGVAVGFYQGDNMKL---------MDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
+ G + G ++ L D+ T F V L
Sbjct: 135 NALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGEL-------------- 180
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM-GSGASPLSPD 426
R L N P DR +R + G+G L PD
Sbjct: 181 ---CR-YLLNQ--------------PEKPDDR----------DHPLRKIIGNG---LRPD 209
Query: 427 VLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVG-SPNAACEIKLVDV----P 480
+ D K FG R+ E YG TE + L N G VG P AA + DV P
Sbjct: 210 IWDEFKERFGVPRIVEFYGSTEGNVGFINLF---NKPGAVGRLPPAAIAVVKYDVETEEP 266
Query: 481 EMNYTSEDQPCPRGEICVRGPLI--------FKGYYKDEIQTKEVI-----DEDGWFHTG 527
+ P GE+ G L+ F GY DE K+++ D +F+TG
Sbjct: 267 IRDANGFCIKVPPGEV---GLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTG 323
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D+ G +DR + F+ +GE ++ ++E V AK V + VYG
Sbjct: 324 DLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEEANVYG 373
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 9e-23
Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 63/335 (18%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
P+ V+ I +TSGT+G PKG +LS NL + + + ++ P+ HI
Sbjct: 134 PERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLIT 193
Query: 315 QVMTVYSG-----VAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
V V + V+ GF + + D A L T + VP++ A R
Sbjct: 194 SVRPVLAVGGSILVSNGFEPKRTLGRLGDPA-LGITHYFCVPQM--------AQAFRAQP 244
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
G F+AA A+ +G P + D+L
Sbjct: 245 G-----FDAAALRHLTALFTGGAPHA----------------------------AEDILG 271
Query: 430 FLKICFGGRVTEGYGMTETSCLISQ-LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTS 486
+L G + +G+GM+E + +D +G G P + ++VD
Sbjct: 272 WLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-------D 322
Query: 487 EDQPCPRG---EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ CP G E+ +RGP + GY++ T DGWF TGDI G ++DR
Sbjct: 323 QGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDR 382
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
KK++F ++ GE + +IE V A + +C V G
Sbjct: 383 KKDMF-ISGGENVYPAEIEAVLADHPGIRECAVVG 416
|
Length = 488 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 87/318 (27%), Positives = 143/318 (44%), Gaps = 54/318 (16%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERAN 314
D+ + ++SGTTG KG +L+H NL+A++ + ++G + V + +P HI
Sbjct: 185 DLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHI----- 239
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
Y + N + M+ F + A IT V + +
Sbjct: 240 -----YGITGICCATLRNKGKVVVMSRFELRTF---------LNALITQEVSFAPIVPPI 285
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
+ N N P+ + +K+K ++ + + A+PL+P++L +
Sbjct: 286 ILNLVKN-------------PIVEEFDLSKLK------LQAIMTAAAPLAPELLTAFEAK 326
Query: 435 FGG-RVTEGYGMTETSCLISQLDEGDNLSGH-------VGSPNAACEIKLVDVPEMNYTS 486
F G +V E YG+TE SC+ L GD GH VG E+K +D
Sbjct: 327 FPGVQVQEAYGLTEHSCI--TLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLP 384
Query: 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
++ P GE+CVR + +GYY ++ +T IDEDGW HTGDIG G + I+DR K
Sbjct: 385 KNTP---GELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKE 441
Query: 547 IFKLAQGEYIAAEKIENV 564
+ K +G +A ++E +
Sbjct: 442 LIKY-KGFQVAPAELEAI 458
|
Length = 546 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 18/204 (8%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSA----YSFISVPLY 169
+T+ + + GL G+ +G + L N E+ V C A S + P Y
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAAN-PSY 69
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
PD + + + + + +FC P L+ + E+ V I+V+ D +
Sbjct: 70 T---PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLR----- 121
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA---SVA 286
++ L L ++ DD A + Y+SGTTG PKG +LSH N+IA V
Sbjct: 122 -IEDLLEPRLGAED-EFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQ 179
Query: 287 GATLGTKFYPSDVYISYLPLAHIY 310
G +DV +++LP H Y
Sbjct: 180 DTLKGNPDSSNDVVLTFLPFYHAY 203
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-22
Identities = 84/393 (21%), Positives = 144/393 (36%), Gaps = 81/393 (20%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
RL++ + ++ L + + L + P +P PDD+A + YTSG+T
Sbjct: 73 ARLLLTDSALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGPDDLAYVIYTSGST 132
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH---IYERANQVMTVYSG--- 322
G PKG V++H +L+ +A P D + + L+ + E + +G
Sbjct: 133 GRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEE---IFGALLAGATL 189
Query: 323 -VAVGFYQGDNMKLMDDMAALRP-TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380
V + D+ L+ + A P TV P L + A
Sbjct: 190 VVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLAA--------------------- 228
Query: 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRV 439
A A+ S +R + G L+P ++D + G R+
Sbjct: 229 -ALPPALAS-----------------------LRLVILGGEALTPALVDRWRARGPGARL 264
Query: 440 TEGYGMTETSC-----LISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR- 493
YG TET+ L+ D +G P A + ++D + +P P
Sbjct: 265 INLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLD-------DDLRPVPVG 317
Query: 494 --GEICVRGPLIFKGYYKDEIQTKEVI--------DEDGWFHTGDIGMWIPGGRLKIIDR 543
GE+ + GP + +GY T E D + TGD+ ++P G L+ + R
Sbjct: 318 VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGR 377
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
+ K+ +G I +IE + V + V
Sbjct: 378 IDDQVKI-RGYRIELGEIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 5e-21
Identities = 94/335 (28%), Positives = 145/335 (43%), Gaps = 58/335 (17%)
Query: 223 PSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
P PI +I+TY++ + +G + + PDDVA + YT GTTG PKGA+L+HGNL
Sbjct: 160 PQAPIPADPRIVTYADFV-KGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLT 218
Query: 283 ASVA-----GATLGTKFYPSDVYISYLPLAHIYERANQVMTVYS---GVAVGFYQG-DNM 333
++V+ G + I LPL HIY A V+ + S G + +Q D
Sbjct: 219 SAVSIYDVWGKPSRATRGDVERVICVLPLFHIY--ALTVILLRSLRRGDLISLHQRFDVA 276
Query: 334 KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393
+ D+ R TVF VP ++ A+ L +R ++
Sbjct: 277 AVFRDIEEKRATVFPGVPTMW--------IALANDPSLEKRDLSSLATI----------- 317
Query: 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET-SCLI 452
GSG +PL +V +F + G ++ G+GMTET S
Sbjct: 318 -----------------------GSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGT 354
Query: 453 SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512
EG + G +G E+ +V + + T P GE+ +RGP + +GY+
Sbjct: 355 GHPPEGPDKPGSIGLMLPGIELDVVSLDDP--TKVLPPGEVGELRIRGPNVTRGYWNRPE 412
Query: 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
++ E F TGDIG G ++DRKK++
Sbjct: 413 ESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDM 446
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 6e-21
Identities = 124/628 (19%), Positives = 236/628 (37%), Gaps = 74/628 (11%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFV 146
R+V ++ LG GE +W+TYG E+GSGL+ G+ G IG+
Sbjct: 435 RSVTRHSTFRCLGQT----SESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCE 490
Query: 147 NRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-E 205
+I++ AC+ Y F ++PL ++ +++ ++ VF ++ ++L+C S +
Sbjct: 491 ASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSRK 548
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ TV + D+ ++ + ++ Y + +GR P Y
Sbjct: 549 LETV--VYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPVPL-KEHVTTDTVFTYVV 605
Query: 266 GTTGTPKGAVLS-----HGNLIASVAGATLGTKFYPS----DVYISYLPLAHIYERANQV 316
T + G L+ H +++ ++ + T PS + + + P A ++ R +
Sbjct: 606 DNTTSASGDGLAVVRVTHADVLRDIS-TLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVL 664
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376
G AV D L +PT+ + P L++ ++ A + LF
Sbjct: 665 GLFAHGSAVA--TVDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLF 722
Query: 377 NAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR--FMGSGASPLSPDVLDFLKIC 434
A+ + + + + S + + F ++ LGG V + S +L+ + +C
Sbjct: 723 ERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLEHISVC 782
Query: 435 FGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPNAACEIKLVDVPEMNYTSE--DQPC 491
+ + L EG + P + E D+P
Sbjct: 783 Y----------VPCLREVFFLPSEG------------VFCVDGTPAPSLQVDLEPFDEPS 820
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI-GMWIPGGRLKIIDRKKNIFKL 550
I G L+ K+ T I W L+++ I
Sbjct: 821 DGAGI---GQLVL---------AKKGEPR----RTLPIAAQWKRDRTLRLLGPPLGILLP 864
Query: 551 AQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALK-AWAASEGIQY-- 607
EY+ A ++E ++++ ++V F+Y D + ++AIVS ++D ++ W S +
Sbjct: 865 VAYEYVIAAELERIFSQSRYVNDIFLYADP-SRPIIAIVSPNRDTVEFEWRQSHCMGEGG 923
Query: 608 ENLEQLCNDPRARAA---VLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFK 664
QL A + AD + +E L + V L F + LTP K
Sbjct: 924 GPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGK 983
Query: 665 IKRPQAKQYFAKAIADMYAELSRSDPSP 692
I+R YF+ I Y++ + P P
Sbjct: 984 IRRDAVHSYFSSVIERFYSD-VETTPLP 1010
|
Length = 1452 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 4e-20
Identities = 51/124 (41%), Positives = 64/124 (51%), Gaps = 20/124 (16%)
Query: 439 VTEGYGMTETSCLISQLDEGDNLS---GHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-- 493
VT YGMTETS + +Q D L VG E+K+VD PE + PR
Sbjct: 344 VTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETG-----ETVPRGE 397
Query: 494 -GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG-MWIPG-----GRLK--IIDRK 544
GE+C RG + KGY+ D +T E ID DGW HTGD+ M G GR+K II
Sbjct: 398 QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGG 457
Query: 545 KNIF 548
+NI+
Sbjct: 458 ENIY 461
|
Length = 559 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 4e-20
Identities = 89/332 (26%), Positives = 150/332 (45%), Gaps = 60/332 (18%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-----PSDVYISYLPLAHIY 310
+D+A + YT GTTG PKG +L+H NL V+ +G ++ +V + LP H+Y
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHVY 262
Query: 311 -ERANQVMTVYSGVAVGFYQGDNMKLM-DDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
A +++ G + +MK++ + + + T+F P +Y
Sbjct: 263 GMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIY-------------- 308
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
A+L+ SP+ +K+ +R SG++PL +V
Sbjct: 309 ----------------IALLN----SPL--------LKEYDISSIRACISGSAPLPVEVQ 340
Query: 429 DFLKICFGGRVTEGYGMTETSCLI-SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ + GG++ EGYG+TE+S + S + G +G P E ++ + T E
Sbjct: 341 EKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLE----TGE 396
Query: 488 D-QPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
P GEI V+GP I KGY+ +T V+ +DGW HTGD+G G + DRKK+
Sbjct: 397 ALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKD 455
Query: 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ +A G + ++E V + + V + G
Sbjct: 456 MI-VASGFNVYPREVEEVLYEHEKVQEVVTIG 486
|
Length = 563 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 5e-20
Identities = 120/513 (23%), Positives = 202/513 (39%), Gaps = 86/513 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY + SGL G+++G + +Y R E + + + VP+ L
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ V +I+ +V+ + + L+ L L +R ++++G P G +
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA---SVAGATL 290
++ LL+ G + P P D+A I YTSG+TG PKG VLSH NL+A SVA
Sbjct: 143 ASWPKLLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATY-- 198
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
+ P D ++ LPL+ Y NQ+ T FY G + L D + +
Sbjct: 199 -LENRPDDRLLAVLPLSFDYGF-NQLTT-------AFYVGATVVLHDYL----------L 239
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
PR + A+ + + A A+ P+W +L +
Sbjct: 240 PR-------DVLKALE-----KHGITGLA------AV------PPLWAQLAQLDWPESAA 275
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLD--EGDNLSGHVGS 467
+R++ + + L L+ R+ YG+TE + + L E D +G
Sbjct: 276 PSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTE-AFRSTYLPPEEVDRRPDSIGK 334
Query: 468 --PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
PNA E+ ++ SE P GE+ RG L+ GY+ D +T E F
Sbjct: 335 AIPNA--EVLVLR----EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFP 388
Query: 526 -----------TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQC 574
+GD G L + R+ + K + G ++ ++E V V +
Sbjct: 389 GELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPTEVEEVAYATGLVAEA 447
Query: 575 FVYG---DSFNSALVAIV------SVDQDALKA 598
+G + A+V +V +D+ AL A
Sbjct: 448 VAFGVPDPTLGQAIVLVVTPPGGEELDRAALLA 480
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 1e-19
Identities = 117/480 (24%), Positives = 170/480 (35%), Gaps = 86/480 (17%)
Query: 113 WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL-YDT 171
TY EA A L G+ +G + L NR E+L V C+ I+VP+
Sbjct: 46 RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTAL 105
Query: 172 LGPDAVKYIVNHAS----VQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
GP + N + V+A L + +P V L+ D S+ +
Sbjct: 106 RGPQLEHILRNSGARLLVVEAALL--AALEAADPGDLPLPAVWLL-------DAPASVSV 156
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL----IA 283
G L P + +P D A I YTSGTTG KG H
Sbjct: 157 PAGWSTAPLPPL-----DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRN 211
Query: 284 SVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALR 343
S +G DV + LPL H N + F+Q A L
Sbjct: 212 SAEDLEIG----ADDVLYTTLPLFHT----NALNA--------FFQ----------ALLA 245
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
+ PR +G AVR G L A + +L +
Sbjct: 246 GATYVLEPRFSA---SGFWPAVRRHGATVTYLLGAMVS-----ILLSQPARE-------- 289
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
RVR P + + FG + +GYG TET+ +I+ + G G
Sbjct: 290 ---SDRAHRVRVALGPGVP--AALHAAFRERFGVDLLDGYGSTETNFVIA-VTHGSQRPG 343
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG--PLIF-KGYYKDEIQTKEV 517
+G E ++VD DQ P GE+ +R P F GY+ +T E
Sbjct: 344 SMGRLAPGFEARVVD-------EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEA 396
Query: 518 IDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVY 577
+ WFHTGD + G + +DR K+ + +GE I++ ++E V V V+
Sbjct: 397 W-RNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENISSFEVEQVLLSHPAVAAAAVF 454
|
Length = 542 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-19
Identities = 103/420 (24%), Positives = 165/420 (39%), Gaps = 94/420 (22%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-EVPTVRLIVVIGGIDDQIPSLPITTG 230
L P+ + YIVNHA + T L+ L+ + P V+ V + LP +
Sbjct: 98 LFPEQIAYIVNHAEDR-YVLFDLTFLPLVDALAPQCPNVKGWVAMTDAA----HLPAGS- 151
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDD--VATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+L Y L+ + + P+ D+ +++CYTSGTTG PKGA+ SH + + GA
Sbjct: 152 TPLLCYETLVGAQDGD---YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGA 208
Query: 289 TLGTKFYPS--DVYISYLPLAHIYERANQVMTVYSGVAVG---FYQG---DNMKLMDDMA 340
L S D + +P+ H+ N YS G G D L + +
Sbjct: 209 ALPDAMGLSARDAVLPVVPMFHV----NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIE 264
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
A R T VP ++ G+ + +R GLR R
Sbjct: 265 AERVTFSAGVPT----VWLGLLNHMR-EAGLRFSTLR---------------------RT 298
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-------IS 453
V +G A P P ++ + +G V +GMTE S L
Sbjct: 299 V--------------IGGSACP--PAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWK 342
Query: 454 QLDEGDNLSGHV----GSPNAACEIKLVDVPEMNYTSEDQPCP-----RGEICVRGPLIF 504
+ + G ++K+V + + P G++ VRGP +
Sbjct: 343 HSQLPLDEQRKLLEKQGRVIYGVDMKIVG-------DDGRELPWDGKAFGDLQVRGPWVI 395
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
Y++ + ++D GWF TGD+ G ++I DR K++ K + GE+I++ IENV
Sbjct: 396 DRYFRGD--ASPLVD--GWFPTGDVATIDADGFMQITDRSKDVIK-SGGEWISSIDIENV 450
|
Length = 539 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 3e-19
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Query: 436 GGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
G + EGYG+TETS + S G L+ G VG P +K++D + +E R
Sbjct: 358 GCTIVEGYGLTETSPVASTNPYG-ELARLGTVGIPVPGTALKVID----DDGNELPLGER 412
Query: 494 GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553
GE+C++GP + KGY++ T E +D +GWF TGDI + P G ++I+DRKK++ + G
Sbjct: 413 GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLI-IVSG 471
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG 578
+ +IE+V V C G
Sbjct: 472 FNVYPNEIEDVVMAHPKVANCAAIG 496
|
Length = 562 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 3e-19
Identities = 102/394 (25%), Positives = 156/394 (39%), Gaps = 96/394 (24%)
Query: 213 VVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTTGT 270
VV+G + G+++LT ++LL+ P P + DD+A + TSG+TG+
Sbjct: 112 VVVGEPFLAAAPVLEEKGIRVLTVADLLAAD-----PIDPVETGEDDLALMQLTSGSTGS 166
Query: 271 PKGAVLSHGNLIASVAGATLGTKFYP-SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ 329
PK ++HGNL A+ + +F +DV +S+LPL H M + + V Y
Sbjct: 167 PKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHD-------MGMVGFLTVPMYF 219
Query: 330 GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389
G + + M LR + L ++ +T+A N AY A+L+
Sbjct: 220 GAELVKVTPMDFLRDPL--LWAELISKYRGTMTAAP-----------NFAY-----ALLA 261
Query: 390 GKNPSPMWDRLVFNKIKDKLGGR-----VRFMGSGASPLSPDVL-DFLKIC--FGGR--- 438
R + + K G +RF +GA P+ P + D L FG R
Sbjct: 262 ---------RRLRRQAKP---GAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEA 309
Query: 439 VTEGYGMTETSCLIS--QLDEG--------DNLS----------GHV------GSPNAAC 472
+ YGM E + +S G D L+ G+ G P
Sbjct: 310 ILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGL 369
Query: 473 EIKLVDVPEMNYTSED-QPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ED Q P G I +RG + G Y D DGW TGD
Sbjct: 370 EVRVVD--------EDGQVLPPRGVGVIELRGESVTPG-YLTMDGFIPAQDADGWLDTGD 420
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 562
+G G + + R K++ +A G I IE
Sbjct: 421 LGYLTEEGEVVVCGRVKDVIIMA-GRNIYPTDIE 453
|
Length = 545 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 8e-19
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 39/192 (20%)
Query: 419 GASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV------GSPNAA 471
GASP+SP L + ++ FG + YG TE +I+ L + D+ G P
Sbjct: 289 GASPMSPVRLAEAIER-FGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG 347
Query: 472 CEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+ L+D + + + GEICVRGPL+ GY+ +T E DGW HTGD
Sbjct: 348 LRVALLD-------EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGD 399
Query: 529 IGMWIPGGRLKIIDRKK--------NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG-- 578
+ G I+DRKK N+F ++E+V A+ V Q V G
Sbjct: 400 VAREDEDGFYYIVDRKKDMIVTGGFNVF---------PREVEDVLAEHPAVAQVAVIGVP 450
Query: 579 -DSFNSALVAIV 589
+ + A+ A+V
Sbjct: 451 DEKWGEAVTAVV 462
|
Length = 524 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-18
Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
GI+ +G N E L V A + + PL L D + +I+NHA + + P
Sbjct: 60 GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119
Query: 194 QTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPP 253
+ L L E P VR +V IG D + + G+++ +Y LL GRS + +
Sbjct: 120 RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-GRSTVYDWPEL 178
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNL 281
A ICY++GTTG PKG V SH +L
Sbjct: 179 DETTAAAICYSTGTTGAPKGVVYSHRSL 206
|
Length = 576 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 6e-18
Identities = 106/368 (28%), Positives = 161/368 (43%), Gaps = 60/368 (16%)
Query: 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC--YTSGTT 268
L++VIG SL G + Y L G + PP D+ +I YTSGTT
Sbjct: 150 LLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEF-AWKPPA-DEWQSIALGYTSGTT 207
Query: 269 GTPKGAVLSH-GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGF 327
+PKG VL H G + +++ A L VY+ LP+ H N ++
Sbjct: 208 ASPKGVVLHHRGAYLMALSNA-LIWGMNEGAVYLWTLPMFH----CNGWCFTWT------ 256
Query: 328 YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387
+AAL T C IY+ I + T + N NA K
Sbjct: 257 -----------LAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET 305
Query: 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE 447
+ P P R+V M +GA+P P VL + G RVT YG++E
Sbjct: 306 IL---PLP---RVV------------HVMTAGAAP-PPSVLFAMSE-KGFRVTHTYGLSE 345
Query: 448 T---SCLISQLDEGDNLSGHVGSP-NAACEIKLVDVPEMNY--TSEDQPCPR-----GEI 496
T S + + E D+L + NA ++ + + ++ T +P P GEI
Sbjct: 346 TYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEI 405
Query: 497 CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556
+RG ++ KGY K+ +E +GWFH+GD+G+ P G ++I DR K+I ++ GE I
Sbjct: 406 VMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDII-ISGGENI 463
Query: 557 AAEKIENV 564
++ ++ENV
Sbjct: 464 SSLEVENV 471
|
Length = 567 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 7e-18
Identities = 89/465 (19%), Positives = 145/465 (31%), Gaps = 82/465 (17%)
Query: 108 VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
V + +TY E + LI G+ G + + E ++ A VP
Sbjct: 247 VRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306
Query: 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
L + + YI+ + + L L + +DD + +P
Sbjct: 307 LDPLYPAERLAYILEDSRPTLLLT-QAHLRVDDVGLPGLA----------LDDALSEIPD 355
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SV 285
T + D +A I YTSG+TG PKG + H L +
Sbjct: 356 TDPIPQAL------------------LGDALAYIIYTSGSTGQPKGVRIEHRALANLLND 397
Query: 286 AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
AGA G D ++ L+ V ++ + G + L + + P
Sbjct: 398 AGARFGLD--ADDRVLALASLSFDAS----VFEIFGALLEGAR----LVLAPALLQVDPA 447
Query: 346 VFCSVPRLYNRI-YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
L + GIT + LR L A R +
Sbjct: 448 ------ALLELLEAQGITVLLLVPLLLRLLLLAALAPDLI--------SPCERLRQLL-- 491
Query: 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS--QLDEGDNLS 462
GG A PL+ R+ YG TE + +
Sbjct: 492 ----SGGE-------ALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESR 540
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVID 519
+G P A ++ ++D +P P GE+ + G + GY T E
Sbjct: 541 VPIGRPVANTQLYILD-------QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFI 593
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
+ TGD+ + G L+ + RK + K+ +G I +IE
Sbjct: 594 ALRLYRTGDLARPLADGALEYLGRKDSQVKI-RGFRIELGEIEAA 637
|
Length = 642 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 1e-17
Identities = 112/497 (22%), Positives = 174/497 (35%), Gaps = 117/497 (23%)
Query: 141 IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLL 200
+G+ N PE+ ++ A + + V L T A+ + HA Q V L
Sbjct: 57 VGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLD 116
Query: 201 SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVAT 260
V + V +++ L+ R PF PDD+
Sbjct: 117 GLDPGVRVIN--------------------VDSPAWADELAAHRDAEPPFRVADPDDLFM 156
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDV-YISYLPLAHIYERANQVM 317
+ +TSGT+G PK +H + + AG L +F P DV Y+S +PL H +N VM
Sbjct: 157 LIFTSGTSGDPKAVRCTHRKV--ASAGVMLAQRFGLGPDDVCYVS-MPLFH----SNAVM 209
Query: 318 TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
+G AV G ++ L +A + F R Y YA
Sbjct: 210 ---AGWAVALAAGASIALRRKFSA---SGFLPDVRRYGATYAN----------------- 246
Query: 378 AAYNAKKQAMLSGKNPSPMWD------RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
Y K + + P D R+V+ G+ +P D+ F
Sbjct: 247 --YVGKPLSYVLATPERP--DDADNPLRIVY--------------GNEGAP--GDIARFA 286
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+ FG V +G+G TE I++ D G +G + +VD P+ C
Sbjct: 287 RR-FGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVD-PDTG-----TEC 335
Query: 492 PRGEIC----------------VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
P E GP F+GYY D E + G + +GD+
Sbjct: 336 PPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDAD 394
Query: 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVY-------GDSFNSALVA- 587
G R + ++ GE + IE + + + VY GD +ALV
Sbjct: 395 GYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLA 453
Query: 588 -IVSVDQDALKAWAASE 603
D DA + A++
Sbjct: 454 PGAKFDPDAFAEFLAAQ 470
|
Length = 529 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 2e-17
Identities = 105/439 (23%), Positives = 159/439 (36%), Gaps = 99/439 (22%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD---VYISYLPLAHIYE 311
PD VA +TSG+TG PK + + + A++A P V + ++P H
Sbjct: 219 PDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMG 278
Query: 312 -RANQVMTVYSGVAVGFYQGDNMKLMDDM-----AALR---PTVFCSVPRLYNRIYAGIT 362
AN ++ G G D+ K + M LR PTV+ +VP YA +
Sbjct: 279 GNANFNGLLWGG---GTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPA----GYAMLA 331
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
A+ LR F +R M G +
Sbjct: 332 EAMEKDDALRRSFFK----------------------------------NLRLMAYGGAT 357
Query: 423 LSPDV---LDFLKICFGGR---VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKL 476
LS D+ + L + G GYG TET+ + G +G P E+KL
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKL 417
Query: 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI--- 533
V + + E+ V+GP + GY+KD T DE+G++ GD ++
Sbjct: 418 APVGD-----------KYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPD 466
Query: 534 -PGGRLKIIDRKKNIFKLAQGEYIAAEKIE-NVYAKCKFVGQCFVYGDSFNSALVAIVSV 591
P L R FKL+ G +++ + + A C V A+VA
Sbjct: 467 DPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIH---------DAVVAGQDR 517
Query: 592 DQDALKAWAASEGIQYENLEQLCNDPRARA-------AVLADM-DSLGR-EAQLRGFEF- 641
L AW QL DP A AVLA + + L A+ G
Sbjct: 518 AFIGLLAWPNPAA-----CRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSR 572
Query: 642 VKAVTLVLEPFTVENGLLT 660
+ L+ EP +++ G +T
Sbjct: 573 IARALLMTEPPSIDAGEIT 591
|
Length = 624 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 3e-17
Identities = 117/505 (23%), Positives = 185/505 (36%), Gaps = 111/505 (21%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA----------- 157
G +W +Y E + +GL GI +G + N E+ IV A
Sbjct: 45 GNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLA 103
Query: 158 --------CSAY-SFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT 208
+AY S I LY + A ++F L S L PT
Sbjct: 104 LFSHRKSELTAYASQIEPALY--IIDRA----------HSLFDYDDFARQLQSKL---PT 148
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
+R I+V G + L + + + F P K D+VA + G+T
Sbjct: 149 LRNIIVAGQTGEAELFLWLES-----PAEPV---------KFPPTKSDEVAFFQLSGGST 194
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFY 328
GTPK +H + SV + Y+ LP AH N ++ + V FY
Sbjct: 195 GTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAH-----NYPLSSPGALGV-FY 248
Query: 329 QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388
G + L D + F L R +T+ V + L AA +K +A L
Sbjct: 249 AGGCVVLAPDPSPT--DCF----PLIERHKVTVTALVPPAVAL---WMQAA--SKSRADL 297
Query: 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET 448
S ++ + G + S + FG ++ + +GM E
Sbjct: 298 SS----------------------LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG 335
Query: 449 SCLISQLDEGDNLSGHV-GSPNAAC-EIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLI 503
++LD+ + G P + E+++VD P GE + RGP
Sbjct: 336 LVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-------DHGNPVAPGETGMLLTRGPYT 388
Query: 504 FKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
F+GYYK D +G+++TGD+ P G + ++ R K+ GE IAAE+IEN
Sbjct: 389 FRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRG-GEKIAAEEIEN 447
Query: 564 VYAKCKFVGQCFVYGDSFNSALVAI 588
+ ++ALV++
Sbjct: 448 ---------LLLAHPAVHDAALVSM 463
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 3e-17
Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGH---VGSPNAACEIKLVDVPEMNYTSEDQPCPRGE 495
V YGMTETS + Q D+L VG E+K+VD + PRGE
Sbjct: 346 VQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-------PDGATVPRGE 398
Query: 496 I---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552
I C RG + KGY+ + T E IDEDGW HTGD+ G ++I+ R K++ +
Sbjct: 399 IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI-IRG 457
Query: 553 GEYIAAEKIE 562
GE I +IE
Sbjct: 458 GENIYPREIE 467
|
Length = 558 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 8e-17
Identities = 57/254 (22%), Positives = 96/254 (37%), Gaps = 40/254 (15%)
Query: 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIG 142
D + + D + VD Y TY A + + + L+ GI G +
Sbjct: 27 DYWQQTARAMPDKIAV-----VDNHGASY---TYSALDHAASRLANWLLAKGIEPGDRVA 78
Query: 143 LYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS---- 198
E+ I+ AC +SVPL + + +++N + F P
Sbjct: 79 FQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA-PTLFKQTRPV 137
Query: 199 --LLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPD 256
+L +++P ++ IV G+D P+ L+ S +++ L D
Sbjct: 138 DLILPLQNQLPQLQQIV---GVDKLAPATSS------LSLSQIIADYEP-LTTAITTHGD 187
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
++A + +TSGT G PKG +L+H N++AS DV++ PL H
Sbjct: 188 ELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH-------- 239
Query: 317 MTVYSGVAVGFYQG 330
A GF G
Sbjct: 240 -------ATGFLHG 246
|
Length = 547 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 1e-16
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 9/200 (4%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G+ W TY E A V + L+ G+ KG + N + ++ AC+ + VP+
Sbjct: 33 GDRSW-TYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPV 91
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
L + + YI++H+ +A P + + L+ +P LI+ L
Sbjct: 92 NFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLIL--------SLVLGGR 143
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
++ S +P DD+A I YTSGT PKGA+L+H LIA
Sbjct: 144 EAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC 203
Query: 289 TLGTKFYPSDVYISYLPLAH 308
+ D+ + LPL H
Sbjct: 204 IVAGDMSADDIPLHALPLYH 223
|
Length = 523 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-16
Identities = 68/303 (22%), Positives = 115/303 (37%), Gaps = 56/303 (18%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DD A + +TSGTTG PK + +H + + P D++ + +
Sbjct: 80 ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWS 139
Query: 315 QVMTVY-SGVAVGFYQG---DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370
+ + G AV Y G D + ++ + T FC+ P Y
Sbjct: 140 SLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY---------------- 183
Query: 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430
R+ +Q + S +R + S PL+P+V+D+
Sbjct: 184 ---RML------LQQDLSSYDFS------------------HLRHVVSAGEPLNPEVIDW 216
Query: 431 LKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490
+ G + +GYG TET L++ + G +G P + ++D E N +
Sbjct: 217 WRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAIID-DEGNELPPGEE 275
Query: 491 CPRGEICV----RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
G+I V R P +F+GY KD +T+ I W+ TGD + G + R +
Sbjct: 276 ---GDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAIKDEDGYFWFVGRADD 331
Query: 547 IFK 549
+ K
Sbjct: 332 VIK 334
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 4e-16
Identities = 88/389 (22%), Positives = 135/389 (34%), Gaps = 113/389 (29%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHG---NLIASVAGATLGTKFYPSDVY---------IS 302
PDD+A + YTSG+TG PKG +SH N + S+A G SD IS
Sbjct: 92 PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMA-RRPGLG--ASDRLLAVTTISFDIS 148
Query: 303 ----YLPL---AHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYN 355
LPL A + +A D +L +A R T+ + P +
Sbjct: 149 VLELLLPLLSGATVV------------IASAETVRDPERLARLIADERITIMQATPATWR 196
Query: 356 RIYAGITSAVRTSGGLRERLFNAAYNAKKQ-AMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414
L A + ++ L
Sbjct: 197 ------------------MLLAAGWRGRESLTALC------------------------- 213
Query: 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAAC 472
G L D+ + L G + YG TET+ +++ D +G P A
Sbjct: 214 ----GGEALPRDLAERLLST-GAELWNMYGPTETTIWSTCARVTAADGPV-TIGRPIANT 267
Query: 473 EIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVI-----DEDG-- 522
++ ++D + QP P GE+ + G + +GY T E D+ G
Sbjct: 268 QVYVLD-------EDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGR 320
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF- 581
+ TGD+ W P GRL+ + R + K+ +G I +IE V V
Sbjct: 321 LYRTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELGEIEAALRAHPGVADAVVVVREEG 379
Query: 582 --NSALVAIV------SVDQDALKAWAAS 602
+ LVA V + D +AL+A +
Sbjct: 380 PGDQRLVAYVVPKAGAAPDAEALRAALRA 408
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 6e-16
Identities = 58/209 (27%), Positives = 80/209 (38%), Gaps = 21/209 (10%)
Query: 104 VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163
+D G +TY E + +GL G KG + L N E+ +V A +
Sbjct: 25 IDAATGRA--LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGA 82
Query: 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
+ P + V + + + L S L+ P V L D
Sbjct: 83 VVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLAS-LALEPVVLL--------DSAD 133
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
+LL P K DDVA + Y+SGTTG KG +L+H NLIA
Sbjct: 134 DGS-------AAIDDLLFADEPEP-PVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIA 185
Query: 284 SVAG--ATLGTKFYPSDVYISYLPLAHIY 310
+VA A G F DV + LP+ HIY
Sbjct: 186 NVAQLVAGEGPNFDREDVTLCVLPMFHIY 214
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 6e-16
Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 35/171 (20%)
Query: 442 GYGMTE---TSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
GYG+TE T C D L+G VGSP E+KLVD GEI +
Sbjct: 270 GYGLTEMASTVCA----KRADGLAG-VGSPLPGREVKLVD---------------GEIWL 309
Query: 499 RGPLIFKGYYKD-EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557
RG + GY++ ++ +++++GWF T D G W G L I+ R N+F + GE I
Sbjct: 310 RGASLALGYWRQGQLVP--LVNDEGWFATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQ 365
Query: 558 AEKIENVYAKCKFVGQCFVY--GDS-FNSALVAIV----SVDQDALKAWAA 601
E+IE V + V Q FV D+ F VA+V L W
Sbjct: 366 PEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQ 416
|
Length = 458 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 6e-16
Identities = 58/166 (34%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-----QLDEGD-----NLS 462
+R + +GA L P+V D + FG R+ EGYG TETS + S L +
Sbjct: 900 LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKE 959
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVI- 518
G VG P +++VD PE + + P GE I + GP + KGY D +T EVI
Sbjct: 960 GSVGMPLPGVAVRIVD-PE-TF----EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK 1013
Query: 519 --DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 562
D GW+ TGD G G L I DR K+ GE + +E
Sbjct: 1014 DIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058
|
Length = 1146 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-15
Identities = 87/333 (26%), Positives = 130/333 (39%), Gaps = 57/333 (17%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS--DVYISYLPLAHIYER 312
DD A + YTSGTTG PKGA+ H L+ + G L + P DV+ + A I
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPADWAWIGGL 146
Query: 313 ANQVM-TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
+ ++ +Y GV V Y+ M+ D A + R Y G+T+A L
Sbjct: 147 LDVLLPALYFGVPVVAYR---MQRFDPERAFA------LMRRY-----GVTNAFLPPTAL 192
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
+ G +D R+R + SG L ++L++
Sbjct: 193 K------------MMRRVGS-ERARYDL------------RLRAVASGGESLGEELLEWA 227
Query: 432 KICFGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490
+ G V E YG TE + ++ G G +G P E+ +VD +P
Sbjct: 228 RDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGHEVAVVD-------DAGRP 280
Query: 491 CP---RGEICVR--GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
P GEI V+ P++F GY+ + T W TGD+G G L R
Sbjct: 281 VPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKF-AGDWLLTGDLGRRDADGYLWFKGRAD 339
Query: 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
++ K + G I +IE K V + V G
Sbjct: 340 DVIKSS-GYRIGPAEIEECLLKHPAVLEAAVVG 371
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 4e-15
Identities = 109/508 (21%), Positives = 188/508 (37%), Gaps = 121/508 (23%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
GE K T+G+ + + GI KG + L R E+ A I++P
Sbjct: 43 GEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPA 102
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQ--TLNSLLSCLSEVPTVRLIVVIG---------- 216
L + Y + A ++ + C+ + + E + L+V++G
Sbjct: 103 THMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDF 162
Query: 217 --GIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGA 274
I++ P TG DD+ + +TSGTTG PK
Sbjct: 163 DKEIENASPDFERPTGN-------------------DATCNDDILLVYFTSGTTGMPK-- 201
Query: 275 VLSHGNLIASVAGATLGTKFY----PSDVYISYLPL-------AHIYERANQVMTVYSGV 323
++ H + G + K++ ++++ +Y Q + +G
Sbjct: 202 MVEHDHTYP--LGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLY---GQWI---AGA 253
Query: 324 AVGFYQGDNM---KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380
AV Y D L++ + T FC+ P +Y R ++E L
Sbjct: 254 AVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL------------IKEDLSKYDL 300
Query: 381 NAKKQAMLSGK--NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
++ + +G+ NP VFN K+K G ++
Sbjct: 301 SSLRYCTTAGEPLNPE------VFNTFKEKTGIKLM------------------------ 330
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGE 495
EG+G TET+ I+ + G +G P+ +I ++D + + C GE
Sbjct: 331 --EGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIID-------PDGKSCEVGEEGE 381
Query: 496 ICVR----GPL-IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKL 550
I +R PL +F GYY+D +T EV DG++HTGD G L + R ++ K
Sbjct: 382 IVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHTGDTAWMDEDGYLWFVGRADDLIKS 440
Query: 551 AQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ G I ++E+ + V +C V G
Sbjct: 441 S-GYRIGPFEVESALIQHPAVLECAVTG 467
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 4e-15
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNA 470
VR+ +G +P P+ L I G +G+GMTETS + L E D G +G P
Sbjct: 266 VRWFYNGGAP-CPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVL 324
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
C+ +L+D ++ + GE+ +RGP + K Y+ T+E I +DGW TGD+
Sbjct: 325 FCDYELID----ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLA 379
Query: 531 MWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
G + I+ RKK + ++ GE I ++E V K V + V G
Sbjct: 380 RVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVVG 426
|
Length = 496 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 5e-15
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 23/203 (11%)
Query: 108 VGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHACSAYSFISV 166
+ E + MTY + ++V + LIY + KG I + N E++++ A + I+V
Sbjct: 22 ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81
Query: 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLP 226
PL L + + + + + +F N LS + +V V+ ++ I +
Sbjct: 82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALS-MQKVSYVQRVISITSL-------- 132
Query: 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
+ + N F ICYTSGTTG PKGAVL+ N+ +
Sbjct: 133 ----------KEIEDRKIDN---FVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179
Query: 287 GATLGTKFYPSDVYISYLPLAHI 309
T D I LPL HI
Sbjct: 180 NNTFAIDLTMHDRSIVLLPLFHI 202
|
Length = 496 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 6e-15
Identities = 109/470 (23%), Positives = 176/470 (37%), Gaps = 91/470 (19%)
Query: 126 VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHAS 185
+ + LI I+K + + N P + A + P+ L ++ I+ HA
Sbjct: 52 LAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAK 111
Query: 186 VQAVFC------VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
+ +F + + + LLS + ++ I ID P + L Y L
Sbjct: 112 PKILFVDRSFEPLAREVLHLLSSEDSNLNLP-VIFIHEID-----FPKRPSSEELDYECL 165
Query: 240 LSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY 295
+ +G + F D ++ YTSGTT PKG V+SH S A +G +
Sbjct: 166 IQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMG 225
Query: 296 PSDVYISYLPLAH---------IYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTV 346
VY+ LP+ H R + + A Y+ M + M
Sbjct: 226 TCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHM------- 278
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
C VP ++N + G + + SP
Sbjct: 279 -CCVPTVFNILLKG----------------------------NSLDLSPR---------- 299
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI---SQLDEGDNLSG 463
G V + G+ P P L G +V YG+TE + + DE + L
Sbjct: 300 ---SGPVHVLTGGSPP--PAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPE 354
Query: 464 H----VGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQT 514
+ + + + L DV N + PR GEI ++G I KGY K+ T
Sbjct: 355 NQQMELKARQGVSILGLADVDVKN-KETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKAT 413
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
E + GW +TGD+G+ P G ++I DR K+I ++ GE I++ ++ENV
Sbjct: 414 SEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENV 461
|
Length = 579 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 9e-15
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 25/144 (17%)
Query: 435 FGGRVTEGYGMTETSC-LISQLDEGDNLSGH-----VGSPNAACEIKLVDVPEMNYTSED 488
FG R+ YGMTET +I GD +G P E ++ D +
Sbjct: 311 FGVRLLTSYGMTETIVGII-----GDRPGDKRRWPSIGRPGFCYEAEIRDD-------HN 358
Query: 489 QPCPR---GEICVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
+P P GEIC++G IFK YY D T +V++ DGW HTGD G G +D
Sbjct: 359 RPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVD 418
Query: 543 RKKNIFKLAQGEYIAAEKIENVYA 566
R+ N+ K GE ++ ++EN+ A
Sbjct: 419 RRCNMIKRG-GENVSCVELENIIA 441
|
Length = 517 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-14
Identities = 66/283 (23%), Positives = 99/283 (34%), Gaps = 67/283 (23%)
Query: 69 VSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS 128
V+RFPD + H R T+ + A +
Sbjct: 28 VARFPDREALVVRH---------------QALR------------YTWRQLADAVDRLAR 60
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
GL+ G+ G +G++ N EWL+ A + I V + ++Y + + V+
Sbjct: 61 GLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRW 120
Query: 189 VFCVP--------QTLNSLLSCLSE----------VPTVRLIVVIGGIDDQIPSLPITTG 230
V C L LL L+E +P +R +V + G
Sbjct: 121 VICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP--------PPG 172
Query: 231 VQILTYSNLLSQG----RSNLQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLI--A 283
L + L ++G R L DD I YTSGTTG PKGA LSH N++
Sbjct: 173 --FLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNG 230
Query: 284 SVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG 326
+LG D +PL H + V+ + VG
Sbjct: 231 YFVAESLG--LTEHDRLCVPVPLYHCF---GMVLANLGCMTVG 268
|
Length = 558 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 3e-14
Identities = 72/344 (20%), Positives = 115/344 (33%), Gaps = 61/344 (17%)
Query: 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH--GNLIASVAGATLGTK 293
+ + YT+GTTG PKG V SH L + A GT
Sbjct: 133 GYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA 192
Query: 294 FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQGDNMKLM-DDMAALRPTVFCSVP 351
DV + +P+ H+ T+ V + + + T VP
Sbjct: 193 LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVP 252
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
++ + + +L
Sbjct: 253 TVWLALA----------------------DYL-------------------ESTGHRLKT 271
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE-----TSCL------ISQLDEGDN 460
R + G++ P L G V +GYG+TE +E
Sbjct: 272 LRRLVVGGSAA--PRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT 329
Query: 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520
L G P +++ D E +D E+ ++GP I GYY +E T+ +
Sbjct: 330 LKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALG-EVQLKGPWITGGYYGNEEATRSALTP 387
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
DG+F TGDI +W G ++I DR K++ K GE+I++ +EN
Sbjct: 388 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENA 430
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 3e-14
Identities = 113/539 (20%), Positives = 173/539 (32%), Gaps = 159/539 (29%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI----VDHACSAYSFISVPLY 169
+TY E + L G+ G + L PE ++ + A +AY VPL
Sbjct: 13 LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAY----VPLD 68
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
+ + +++ A LL+ S P R + I ++
Sbjct: 69 PAYPAERLAFML--EDSGARV--------LLTDESLAPLARADQLPLVILEEEL------ 112
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
P DD+A + YTSG+TG PKG + H V
Sbjct: 113 ------------DAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPH----RGVVRLV 156
Query: 290 LGTKFY---PSDVYISYLPLA------------------HIYERANQVMTVYSGVAVGFY 328
T + P D ++ PL+ + ++
Sbjct: 157 RNTNYIALDPDDRFLQLSPLSFDASTFEIWGALLNGGRLVLIDKE--------------- 201
Query: 329 QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN--AAYNAKKQA 386
+ D L RL G+T T+ LFN +
Sbjct: 202 ------TLLDPDRLA--------RLIAE--QGVTVLWLTAA-----LFNQLVDEDP---E 237
Query: 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD-VLDFLKICFGGRVTEGYGM 445
L+G +R + G LSP V L C G R+ GYG
Sbjct: 238 ALAG----------------------LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGP 275
Query: 446 TE----TSC-LISQLDEGDNLSGHV--GSPNAACEIKLVDVPEMNYTSEDQPCP---RGE 495
TE ++C +I++LDE + G P + ++D E QP P GE
Sbjct: 276 TENTTFSTCHVITRLDEAA---DSIPIGRPIPNTTVYILD-------EEGQPVPIGVPGE 325
Query: 496 ICVRGPLIFKGYYKDEIQTKEVIDED----G--WFHTGDIGMWIPGGRLKIIDRKKNIFK 549
+ V G + GY T E D G + TGD+ W P G ++ + R K
Sbjct: 326 LYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVK 385
Query: 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNS---ALVAIVS----VDQDALKAWAA 601
+ +G I +IE + V + V + LVA V +D L+A A
Sbjct: 386 I-RGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGALDAAELRAHLA 443
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 98/455 (21%), Positives = 170/455 (37%), Gaps = 68/455 (14%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++YGE +G+ L G+ + + L ++ ++ I + V L L
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D Y++ + + VF + L + + L + P + VV+G + L
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQL-------- 142
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGATL 290
+ LL+ +P + + DD A Y+SG+TG PKG V +H N + A TL
Sbjct: 143 ---AELLATESEQFKP-AATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198
Query: 291 GTKFYPSDVYISYLPLAHIYERANQV---MTVYSGVAVGFYQGDNMKLMDDMAALRPTVF 347
G + DV S L Y N + M+V + + + + D + +PT+F
Sbjct: 199 GIR--EDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIF 256
Query: 348 CSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407
VP LY AML+ N +
Sbjct: 257 YGVPTLY------------------------------AAMLADPN------------LPA 274
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467
+ R+R S L +V + FG + +G G TE + GD G G
Sbjct: 275 EDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGK 334
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
P ++LV + +P GE+ + GP Y+ + +T++ + W +G
Sbjct: 335 PVPGYRLRLVG-DGGQDVAAGEP---GELLISGPSSATMYWNNRAKTRDTF-QGEWTRSG 389
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 562
D + G R ++ K++ G Y++ +IE
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVS-GIYVSPFEIE 423
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 4e-14
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 18/236 (7%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T +D+F AV D L T R G + +Y E + GL G+ +G
Sbjct: 23 TINDHFDAAVANCPDKPAL-TAYRDGH--GAVRRFSYRELDCRVDRIAVGLARLGVGRGD 79
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS- 198
+ NR E+ + AC+ + PL + +++NHA + VF VP
Sbjct: 80 VVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSK-VFVVPSVFRGF 138
Query: 199 -----LLSCLSEVPTVRLIVVIGGI-DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
S++P +R +VVI G DD + +T + + G
Sbjct: 139 DHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAAAILAG-------PR 191
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
P PDDV + YTSGTTG PKG + + L +++ + DV + P+AH
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAH 247
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 5e-14
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 441 EGYGMTETSCLISQLDEGDNLSGHV---GSPNAACEIKLVDVPEMNYTSEDQPCPRGEIC 497
YG TE S + ++ D LS + G A EIK+VD P GE
Sbjct: 331 SVYGSTE-SSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD----EARKTLPPGCEGEEA 385
Query: 498 VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557
RGP +F GY + T +DE+GW+++GD+ G +KI RKK+I + GE I+
Sbjct: 386 SRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDII-VRGGENIS 444
Query: 558 AEKIENVYAKCKFVGQCFVYG 578
+ ++E++ + + V
Sbjct: 445 SREVEDILLQHPKIHDACVVA 465
|
Length = 547 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-13
Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 46/226 (20%)
Query: 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIG 142
R + D + L V D +W TY E + GL+ GI KG +G
Sbjct: 20 QLLDRTAARYPDREAL---VYRDQ---GLRW-TYREFNEEVDALAKGLLALGIEKGDRVG 72
Query: 143 LYFVNRPEWLIVDHACSAYSFISV---PLYDTLGPDAVKYIVNHASVQAVFCVP------ 193
++ N PEW++ A + I V P Y ++Y +N + +A+
Sbjct: 73 IWAPNVPEWVLTQFATAKIGAILVTINPAYRL---SELEYALNQSGCKALIAADGFKDSD 129
Query: 194 --QTLNSLLSCL----------SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLS 241
L L L + +P +R ++ +G D++ P + L + LL+
Sbjct: 130 YVAMLYELAPELATCEPGQLQSARLPELRRVIFLG--DEKHPGM--------LNFDELLA 179
Query: 242 QGRSN----LQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLI 282
GR+ L PDD I YTSGTTG PKGA L+H N++
Sbjct: 180 LGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNIL 225
|
Length = 559 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-13
Identities = 93/505 (18%), Positives = 162/505 (32%), Gaps = 91/505 (18%)
Query: 128 SGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQ 187
+ L G+ +G + ++ N EW+++ AC+ + + V +I+ +
Sbjct: 50 AWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRAR 109
Query: 188 AVFCVPQ----TLNSLLSCL--SEVPTVRLIVVIGGIDDQIPS-LPITTGVQILTYSNLL 240
+ P ++L+ + +P +R I V+ D P+ P
Sbjct: 110 WLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAP 169
Query: 241 SQGRSNLQPFSPPKPDDVATICYT-SGTTGTPK------GAVLSHGNLIASVAGATLGTK 293
D + +T SGTT PK +L H IA G
Sbjct: 170 PAAAG-----ERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYG------ 218
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRL 353
+ P V ++ LP ++ +S + G + VF +
Sbjct: 219 YDPGAVLLAALPFCGVFG--------FSTLLGALAGGAPLVCEP--------VFDAARTA 262
Query: 354 YNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRV 413
+T LR R+ + A P
Sbjct: 263 RALRRHRVTHTFGNDEMLR-RILDTAGERA---------DFP----------------SA 296
Query: 414 RFMGSGA-SPLSPDVLDFLKICFGGRVTEG-YGMTETSCLISQLDEGDNLS------GHV 465
R G + +P ++ G G YG +E L++ D +S G
Sbjct: 297 RLFGFASFAPALGELAALA--RARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRP 354
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
SP A ++ D + + + GEI +R P + +GY + T + +DG+F
Sbjct: 355 ASPEA--RVRARDPQDGALLPDGES---GEIEIRAPSLMRGYLDNPDATARALTDDGYFR 409
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NS 583
TGD+G G+ R + +L G + +IE+ V V G + +
Sbjct: 410 TGDLGYTRGDGQFVYQTRMGDSLRLG-GFLVNPAEIEHALEALPGVAAAQVVGATRDGKT 468
Query: 584 ALVAIV------SVDQDALKAWAAS 602
VA V S D+ L A
Sbjct: 469 VPVAFVIPTDGASPDEAGLMAACRE 493
|
Length = 540 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-13
Identities = 88/332 (26%), Positives = 124/332 (37%), Gaps = 63/332 (18%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASV-AGATLGTKFYPSDVYISYLPLAHIYER 312
DDVA I +TSGTTG PKG + H +++A A + P DV+I PLA +
Sbjct: 145 AADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGL 204
Query: 313 ANQVM-TVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370
V+ + G AV Q L+ + R T+ + P Y
Sbjct: 205 GGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYR--------------- 249
Query: 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430
AML K+K +R S L V
Sbjct: 250 ---------------AML--------------IKVKAFDISSLRKCVSAGETLPAKVWQD 280
Query: 431 LKICFGGRVTEGYGMTET-SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
G ++ +G G TE IS +E + G G P E ++VD +
Sbjct: 281 WYERTGLKIIDGIGATEMLHIFISANEE-NAKPGATGKPVPGYEARIVD-------DQGN 332
Query: 490 PCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
PRGE + VRGP + Y DE Q + V DGW TGDI G + R +
Sbjct: 333 EVPRGEAGRLAVRGPTGCR-YLDDERQQEYV--RDGWNVTGDIFRQDEDGYFHYVARSDD 389
Query: 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ ++ G IAA ++E+ V +C V G
Sbjct: 390 MI-VSAGYNIAAPEVEDALLTHPDVAECAVIG 420
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-13
Identities = 65/303 (21%), Positives = 118/303 (38%), Gaps = 65/303 (21%)
Query: 43 YSVVLPEKLDTGKW-NVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTR 101
S+ LPE T + N+ S+R R+PD I + G
Sbjct: 3 KSLTLPE---TSLFHNLEVSAR-------RYPDKTAI-----------------VFYGRA 35
Query: 102 VRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH--GISKGSCIGLYFVNRPEWLIVDHACS 159
+ +Y E E +G + G+ KG + LY N P+++I +A
Sbjct: 36 I------------SYREL-LEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAIL 82
Query: 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVV-IGGI 218
+ + VP+ + + + V + + + + + + +IV
Sbjct: 83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDY 142
Query: 219 DDQIPSLPITTGVQ------------ILTYSNLLSQGRSNLQPFSPP---KPDDVATICY 263
P + + ++ ++ + L+ G L P PP PDD+A + Y
Sbjct: 143 LPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAG---LAP--PPHTAGPDDLAVLPY 197
Query: 264 TSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT-VYSG 322
TSGTTG PKG + +H ++A+ G+ L + P V ++ LPL H+ + + +Y+G
Sbjct: 198 TSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAG 257
Query: 323 VAV 325
V
Sbjct: 258 ATV 260
|
Length = 546 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 3e-13
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
PP PDD+A + YTSG+TG PKG +++HGNL+A++ P DV +S+LPL H
Sbjct: 141 RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-12
Identities = 64/242 (26%), Positives = 99/242 (40%), Gaps = 30/242 (12%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T +D+ V + D K T VR+ G + TY E V GL G+ +G
Sbjct: 25 TINDDLDACVASCPD-KTAVTAVRLGT--GAPRRFTYRELAALVDRVAVGLARLGVGRGD 81
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN-- 197
+ N E+ ++ ACS + PL + +++ HA V VP+T
Sbjct: 82 VVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAE-SKVLVVPKTFRGF 140
Query: 198 ---SLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP- 252
++ L E+P +R +VV+GG ++ LL +P +P
Sbjct: 141 DHAAMARRLRPELPALRHVVVVGGDGAD-------------SFEALLITPAWEQEPDAPA 187
Query: 253 ------PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306
P PDDV + YTSGTTG PKG + + L+A++ DV + P+
Sbjct: 188 ILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPM 247
Query: 307 AH 308
AH
Sbjct: 248 AH 249
|
Length = 547 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-12
Identities = 46/123 (37%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 436 GGRVTEG-YGMTETSCLIS-----QLDEGDNLSG--HVGSPNAACEIKLVDVPEMNYTSE 487
G + E +GMTET + Q D+ D LS VG P E K+ D T E
Sbjct: 352 GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFE----TGE 407
Query: 488 DQPC-PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
P GEI VR P + KGY+ T E + DGW HTGDIG G L + R+K
Sbjct: 408 LLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKE 466
Query: 547 IFK 549
+ K
Sbjct: 467 MLK 469
|
Length = 567 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-12
Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
L GR L F PDD A I +TSG+ GTPKG VLSH NL+A+ A F P D
Sbjct: 777 LLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDK 836
Query: 300 YISYLPLAHIYE-RANQVMTVYSGVAVGFY 328
+ LP+ H + V+ + SGV V Y
Sbjct: 837 VFNALPVFHSFGLTGGLVLPLLSGVKVFLY 866
|
Length = 1140 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-12
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 9/189 (4%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
GI KG + L+ N PE++ + I VP+ L + +I+ ++ +
Sbjct: 58 GIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSA 117
Query: 194 QTLNSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
Q E T +R I + +LP GV +++ L +Q + L P
Sbjct: 118 QFYPMYRQIQQEDATPLRHICLTR------VALPADDGV--SSFTQLKAQQPATLCYAPP 169
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
DD A I +TSGTT PKG V++H NL + + DVY++ +P HI +
Sbjct: 170 LSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQ 229
Query: 313 ANQVMTVYS 321
M +S
Sbjct: 230 CTAAMAAFS 238
|
Length = 517 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-12
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 435 FGGRVTEGYGMTETSCL--ISQL-DEGDNLSGHV--------GSPNAACEIKLVDVPEMN 483
G V +GMTE S L ++ L L G G P E+K+ D
Sbjct: 317 MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD----- 371
Query: 484 YTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ P G + VRGP + YY+ + E++D+DG+F TGD+ G +
Sbjct: 372 --DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYM 426
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENV 564
+I DR K++ K + GE+I++ +EN+
Sbjct: 427 RITDRSKDVIK-SGGEWISSIDLENL 451
|
Length = 542 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 5e-12
Identities = 68/317 (21%), Positives = 115/317 (36%), Gaps = 52/317 (16%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DD+ YTSGTTG PKG + L A A DV+ +
Sbjct: 87 DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWN------------ 134
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
G A G Y + +A TVF + G T+ R
Sbjct: 135 ---IADPGWAYGLY----YAITGPLAMGITTVF---------LEGGFTAENTYDVLERLG 178
Query: 375 LFNAAYNAKK-QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
+ N A + + +++ + + ++R S PL+P+V+ + +
Sbjct: 179 VTNFAGSPTAYRMLMAAGADAAARIK-----------LKLRVASSAGEPLNPEVVRWFQA 227
Query: 434 CFGGRVTEGYGMTETSCLISQL--DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
G + + YG TET + + +G +G P I ++D + ++ +P
Sbjct: 228 NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLD-DDGQPLADGEP- 285
Query: 492 PRGEICVR----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
G++ + L F GY+ D +T E+I W+ TGD+ G I R ++
Sbjct: 286 --GQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTGDLVERDEDGYFWFIGRADDV 342
Query: 548 FKLAQGEYIAAEKIENV 564
A G I +E+
Sbjct: 343 IISA-GYRIGPFDVESA 358
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 419 GASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIK 475
GAS + +VL L+ G R YG TE + L + L ++L G G P E +
Sbjct: 294 GASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETR 353
Query: 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
+VD + N + + GEI R P + GY+ D +T E GWFH+GD+G+
Sbjct: 354 VVD-DDGNDVAPGEV---GEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEE 408
Query: 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
G + ++DRKK++ K GE +A+ ++E
Sbjct: 409 GYITVVDRKKDMIKTG-GENVASREVEEA 436
|
Length = 523 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC--LISQLDEGDNLSGHVGSPNAA 471
F+ +GA P+ +++ + G ++ +GMTE L D + S G P
Sbjct: 316 TFLCAGA-PIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPG 374
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ++ P P G+I VRG F GY K D DGWF TGD
Sbjct: 375 VEVRVVD-------ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGD 425
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
+ G ++I R K++ + GE I +IE +
Sbjct: 426 LARIDADGYIRISGRSKDVI-IRGGENIPVVEIEAL 460
|
Length = 547 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 86/378 (22%), Positives = 127/378 (33%), Gaps = 70/378 (18%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHIY 310
PK DD A I +TSG+TG PKG V +H A + L + + D ++ P ++
Sbjct: 82 PKADDPAAILFTSGSTGPPKGVVYTHRTFAAQID--ALRSLYGIREGDRDLAAFPPFALF 139
Query: 311 ERANQVMTVYSGVAVGF-YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
A V TV + D KL + + + P L +
Sbjct: 140 GPALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEENGIQLP 199
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
LR +LS P P D L V + A +P
Sbjct: 200 SLRR-------------VLSAGAPVP----------PDLLRRFVANLMPEAEIHTP---- 232
Query: 430 FLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGH-----------VGSPNAACE---I 474
YG TE L ++ ++ + L+ VG P + I
Sbjct: 233 -------------YGATE--ALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRII 277
Query: 475 KLVDVP--EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK-EVIDED--GWFHTGDI 529
+ D P + E P GEI V GP + + YY TK I + W GD+
Sbjct: 278 PIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDL 337
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DSFNSALVA 587
G + GRL RK + + A G + +E V+ + V + + G A V
Sbjct: 338 GYFDDQGRLWFCGRKAHRVETAGG-TLFTVPVEQVFNRHPGVRRSALVGVGKPGTQAPVL 396
Query: 588 IVSVDQDALKAWAASEGI 605
+V L EG
Sbjct: 397 VVEPMPPVLDRRKRLEGR 414
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 5e-11
Identities = 87/324 (26%), Positives = 125/324 (38%), Gaps = 68/324 (20%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY---PSDVYISYLPLAHIYE 311
P+DVA I +TSGT PKG L+H NL+A+ A L KF+ DV +S+LP H Y
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLAN-QRACL--KFFSPKEDDVMMSFLPPFHAY- 237
Query: 312 RANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
GF N + + + P VF P +I I A T G
Sbjct: 238 --------------GF----NSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGS 279
Query: 372 RERLFNAAYN-AKKQAMLSGKNPSPMWDRLVF---NKIKDKLGGRVRFMGSGASPLSPDV 427
F+ AKKQ R V + KD L A P +
Sbjct: 280 TPVFFDYILKTAKKQ------ESCLPSLRFVVIGGDAFKDSL-------YQEALKTFPHI 326
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTS 486
++ +GYG TE S +I+ VG P ++ +V S
Sbjct: 327 ----------QLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIV--------S 368
Query: 487 EDQ--PCPRGE---ICVRGPLIFKGYY-KDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
E+ P GE + RG +F GY +D Q + + W+ TGD+G G L +
Sbjct: 369 EETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFL 428
Query: 541 IDRKKNIFKLAQGEYIAAEKIENV 564
R K+ E ++ E +E++
Sbjct: 429 KGRLSRFVKIG-AEMVSLEALESI 451
|
Length = 539 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 8e-11
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 30/186 (16%)
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV--------GSPN 469
G S + P ++ + +G V +GMTETS + + +SG G
Sbjct: 305 VGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFP 364
Query: 470 AACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQT----------KEVI 518
A+ E ++V+ + M T ++ GEI VRG + YY + ++V
Sbjct: 365 ASLEYRIVNDGQVMESTDRNE----GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVE 420
Query: 519 D------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVG 572
D DGW TGD+G G L I DR +++ + + GE+I + ++EN V
Sbjct: 421 DANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVV 479
Query: 573 QCFVYG 578
+C V G
Sbjct: 480 ECAVIG 485
|
Length = 576 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 8e-11
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 15/163 (9%)
Query: 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI 452
P +W + + + R+R S PL+P+V++ +K +G + +GYG TET+ +I
Sbjct: 182 PPTVWRMFIQQDL-AQYDVRLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMI 240
Query: 453 SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVR---GPL-IFKG 506
G +G P + L+D E + P GEI + P+ + G
Sbjct: 241 GNSPGQKVKPGSMGRPLPGYRVVLLD-------DEGKEIPVTEGEIALDLGDRPIGLMLG 293
Query: 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
Y D +T G++ TGD G L + R ++FK
Sbjct: 294 YMGDPEKTAAAFR-GGYYRTGDKAYRDEDGYLWFVGRADDVFK 335
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 8e-11
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 11/189 (5%)
Query: 114 MTYGEAGTARTE-VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
+TY E R + LI G+ G +G+Y NR E++ + V +
Sbjct: 29 LTYAEL-EERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRY 87
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
D ++Y+++ + A+ + + L +P +R +VV+ LP V
Sbjct: 88 VEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVED-GSGNDLLP--GAV- 143
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLG 291
Y + L+ G S + F PDD+ + YT GTTG PKG + ++ + G
Sbjct: 144 --DYEDALAAG-SPERDFGERSPDDLYLL-YTGGTTGMPKGVMWRQEDIFRVLLGGRDFA 199
Query: 292 TKFYPSDVY 300
T D
Sbjct: 200 TGEPIEDEE 208
|
Length = 533 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 9e-11
Identities = 94/377 (24%), Positives = 143/377 (37%), Gaps = 87/377 (23%)
Query: 229 TGVQIL-----TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
GV++L Y+ L+ L P D + +TSGTTG PK SHG L
Sbjct: 119 PGVRVLDVDTPAYAELV-AAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLA- 176
Query: 284 SVAGATLGTKF--YPSDV-YISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMA 340
AG L +F DV Y+S +PL H +N VM +G A G + L +
Sbjct: 177 -FAGRALTERFGLTRDDVCYVS-MPLFH----SNAVM---AGWAPAVASGAAVALPAKFS 227
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA--MLSGKNPSPMWD 398
A F R Y Y FN Y K A + + + P +
Sbjct: 228 ASG---FLDDVRRYGATY-----------------FN--YVGKPLAYILATPERPDDADN 265
Query: 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG 458
L RV F G+ ASP D+ +F + FG +V +GYG +E + ++ + E
Sbjct: 266 PL-----------RVAF-GNEASP--RDIAEFSRR-FGCQVEDGYGSSEGAVIVVR--EP 308
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR----------------GEICVR-GP 501
G +G A + + + PE C GE+ G
Sbjct: 309 GTPPGSIGRG--APGVAIYN-PETL-----TECAVARFDAHGALLNADEAIGELVNTAGA 360
Query: 502 LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKI 561
F+GYY + T E + G + +GD+ G + R + ++ GE ++A I
Sbjct: 361 GFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRV-DGENLSAAPI 418
Query: 562 ENVYAKCKFVGQCFVYG 578
E + + + + VY
Sbjct: 419 ERILLRHPAINRVAVYA 435
|
Length = 540 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L P+ + +I+NHA + V + L ++P+V VV+ +P TT
Sbjct: 98 LFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAA----HMPQTTLK 153
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN-----LIASVA 286
+ Y +++ + + + + A +CYTSGTTG PKG + SH + L+A+
Sbjct: 154 NAVAYEEWIAEADGDFAWKTFDE-NTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNG 212
Query: 287 GATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG 326
A LGT +D + +PL H AN +S ++G
Sbjct: 213 DA-LGTS--AADTMLPVVPLFH----ANSWGIAFSAPSMG 245
|
Length = 542 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-10
Identities = 113/461 (24%), Positives = 174/461 (37%), Gaps = 122/461 (26%)
Query: 143 LYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSC 202
L F + P+++ C I+VP Y P++ + LLS
Sbjct: 69 LLFPSGPDYVAAFFGCLYAGVIAVPAYP---PESAR--------------RHHQERLLSI 111
Query: 203 LSEVPTVRLIVVIGGIDD---QIPSLPITTGVQILTYSNLLSQGRSNLQPFSPP-KPDDV 258
+++ RL++ + + D Q+ L ++L L Q P +PDD+
Sbjct: 112 IADAEP-RLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAEAWQ--EPALQPDDI 168
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIAS--VAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
A + YTSG+T PKG +SHGNL+A+ + G P DV +S+LPL H
Sbjct: 169 AFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHD------- 221
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVP-RLYNRI--YAGITSAVRTSGG--- 370
M + G+ + G LM P F P R I Y G SGG
Sbjct: 222 MGLIGGLLQPIFSGVPCVLMS------PAYFLERPLRWLEAISEYGGT-----ISGGPDF 270
Query: 371 ----LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
ER+ +A L + S RV + SG+ P+ D
Sbjct: 271 AYRLCSERVSESA--------LERLDLS---------------RWRVAY--SGSEPIRQD 305
Query: 427 VLDFLKICFGG------RVTEGYGMTETSCLIS-----------QLDEGDNLSGHV---- 465
L+ F YG+ E + +S +LD + L+ +
Sbjct: 306 SLERFAEKFAACGFDPDSFFASYGLAEATLFVSGGRRGQGIPALELD-AEALARNRAEPG 364
Query: 466 -GSPNAAC-------EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD-EIQTKE 516
GS +C + +VD + +++ GEI GP I GY+++ E K
Sbjct: 365 TGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRV---GEIWASGPSIAHGYWRNPEASAKT 421
Query: 517 VIDEDG--WFHTGDIGMWIPG-----GRLK--IIDRKKNIF 548
++ DG W TGD+G G GRLK +I R N++
Sbjct: 422 FVEHDGRTWLRTGDLGFLRDGELFVTGRLKDMLIVRGHNLY 462
|
Length = 4334 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 87/400 (21%), Positives = 141/400 (35%), Gaps = 97/400 (24%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATLGTKFYPSDVYISYLPL 306
P +P+ A + YTSGTTG PKGAV+ + V G + +V + +PL
Sbjct: 145 EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPL 204
Query: 307 AHIYERANQVMTVYSGVAVG-------------FYQGDNMKLMDDMAALRPTVFCSVPRL 353
H+ + V V F D +KL++ R T + P
Sbjct: 205 YHVIG--------FFAVLVAALALDGTYVVVEEFDPADALKLIE---QERVTSLFATPTH 253
Query: 354 YNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRV 413
+ + A A L F A M P + +R
Sbjct: 254 LDALAAAAEGAPLKLDSLEHVTFAGA------TM-----PDAVLER-------------- 288
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473
+ G YG TE ++ L D +G P E
Sbjct: 289 -----------------VNQHLPGEKVNIYGTTEA---MNSLYMRDPRTGTEMRPGFFSE 328
Query: 474 IKLVDVPEMNYTSEDQPCPRGE----ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
+++V + S D+ P GE + F GY T E + +DGW+ T D+
Sbjct: 329 VRIVRIGG----SPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKL-QDGWYRTSDV 383
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALV 586
+ P G ++I+ R ++ ++ GE I ++E V + V + V G + + ++
Sbjct: 384 AVVDPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVT 442
Query: 587 AIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLAD 626
A V V ++ A + L+ C RA+ LAD
Sbjct: 443 ACV-VPREGETLSA-------DALDTFC-----RASELAD 469
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-10
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472
+R++ +GA + + FG R+ EGYG+TET+ +I+ N +G VG
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGI 968
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532
E +L VP ++ G + VRGP + GY + E DGW+ TGDI
Sbjct: 969 EYRLEPVPGID--------EGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTI 1020
Query: 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
G + I R K K+A GE I+ +E
Sbjct: 1021 DEEGFITIKGRAKRFAKIA-GEMISLAAVEE 1050
|
Length = 1140 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 34/157 (21%)
Query: 443 YGMTETSCLISQLDEGD----NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI-- 496
+GM E ++LD+ D G SP+ E+ + D ++ P P+GE+
Sbjct: 332 FGMAEGLVNYTRLDDSDERIFTTQGRPMSPDD--EVWVAD-------ADGNPLPQGEVGR 382
Query: 497 -CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ--- 552
RGP F+GYYK D +G++ +GD+ P G + ++ R+K+ Q
Sbjct: 383 LMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKD-----QINR 437
Query: 553 -GEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAI 588
GE IAAE+IEN+ + + ++ALV++
Sbjct: 438 GGEKIAAEEIENLLLR---------HPAVIHAALVSM 465
|
Length = 536 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 96/413 (23%), Positives = 149/413 (36%), Gaps = 87/413 (21%)
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSD 298
L + +P P I TSGTTGTPKGA S G A L T + +
Sbjct: 182 LIAAHAGQRP--EPTGRKGRVILLTSGTTGTPKGARRS-GPGGIGTLKAILDRTPWRAEE 238
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLY 354
+ P+ H + + V+ + F + L+D R T VP ++
Sbjct: 239 PTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDLID---RHRATGLAVVPVMF 295
Query: 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGR-V 413
+RI + +++++ GR +
Sbjct: 296 DRIMD-----------------------------------------LPAEVRNRYSGRSL 314
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH---VGSPNA 470
RF + S + PDV+ FG + Y TE +I+ D L G P
Sbjct: 315 RFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAG-MIATATPAD-LRAAPDTAGRPAE 372
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
EI+++D + + P GE I VR F GY TK+ DG+ +G
Sbjct: 373 GTEIRILD-------QDFREVPTGEVGTIFVRNDTQFDGYTSG--STKDFH--DGFMASG 421
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSA 584
D+G GRL ++ R + ++ GE + ++E A V + V G + +
Sbjct: 422 DVGYLDENGRLFVVGRDDEMI-VSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQR 480
Query: 585 LVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLAD---MDSLGREA 634
L A V + A +A+ E L+Q D A V D +D L R A
Sbjct: 481 LAAFVVLKPGA----SATP----ETLKQHVRDNLANYKVPRDIVVLDELPRGA 525
|
Length = 537 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-10
Identities = 51/188 (27%), Positives = 69/188 (36%), Gaps = 57/188 (30%)
Query: 411 GRVRFMGSGASPLSPDVLD-FLKICFG------GRVTEGYGMTETSCLIS---------- 453
R +GA P+ D L+ F + F YG+ E + +S
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAE-RFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVV 328
Query: 454 -QLDEGDNLSGHV----------------GSPNAACEIKLVDVPEMNYTSEDQPCPR--- 493
++D G G P E+++VD PE +P P
Sbjct: 329 LRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVD-PETR-----RPLPDGEV 382
Query: 494 GEICVRGPLIFKGYYKDEIQTKEV------IDEDGWFHTGDIGMWIPG-----GRLK--I 540
GEI VRGP + GY+ T E DE GW TGD+G G GRLK I
Sbjct: 383 GEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLHDGELYVTGRLKDLI 442
Query: 541 IDRKKNIF 548
I R +N +
Sbjct: 443 IIRGRNHY 450
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 13/155 (8%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV-GSP-NAA 471
R + G + LS + + G ++ + +GM E ++LD+ + H G P +
Sbjct: 308 RLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPD 367
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ++ P GE+ RGP +GYY+ D DG++ +GD
Sbjct: 368 DEVRVVD-------ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGD 420
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
+ P G L + R K+ GE IAAE++EN
Sbjct: 421 LVRRDPDGYLVVEGRVKDQINRG-GEKIAAEEVEN 454
|
Length = 542 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
Query: 232 QILTYSNLLSQGR-SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--- 287
Q + + L QGR +L+P P DD+A + YT GTTG KGA+L+HGNL+A++
Sbjct: 183 QAVPFKQALRQGRGLSLKPV-PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRA 241
Query: 288 --ATLGTKFYP-----SDVYISYLPLAHIY 310
+ LG P +V I+ LPL HIY
Sbjct: 242 CLSQLGPDGQPLMKEGQEVMIAPLPLYHIY 271
|
Length = 562 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 67/280 (23%), Positives = 109/280 (38%), Gaps = 54/280 (19%)
Query: 347 FCSVPRLYNRIYAGITSAVR--TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
FC +P LY+ +G+ +R +GG +L Y K NPS + LV +
Sbjct: 164 FCVLP-LYH--VSGLMQFMRSFLTGG---KLVILPYKRLKSGQELPPNPSDFFLSLVPTQ 217
Query: 405 IKDKLGGRVRFMGS------GASPLSPDVLD---FLKICFGGRVTEGYGMTETSCLISQL 455
++ L R +++ G +P P +L+ L++ R+ YGMTET+ I+ L
Sbjct: 218 LQRLLQLRPQWLAQFRTILLGGAPAWPSLLEQARQLQL----RLAPTYGMTETASQIATL 273
Query: 456 DEGDNLSGHVGS----PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDE 511
D L+G+ S P+A I G I ++ + GYY
Sbjct: 274 KPDDFLAGNNSSGQVLPHAQITIP--------------ANQTGNITIQAQSLALGYY--- 316
Query: 512 IQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFV 571
+++D G F T D+G G L I+ R + GE + ++E V
Sbjct: 317 ---PQILDSQGIFETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAAILATGLV 372
Query: 572 GQCFVYG--DS-FNSALVAIV-----SVDQDALKAWAASE 603
V G D + + AI S+ + LK +
Sbjct: 373 QDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQ 412
|
Length = 452 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 4e-09
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYG+ + G+ G + L +NRPE L+ A L+
Sbjct: 38 LTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGS 97
Query: 174 PDAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
D Y++ A + + P + L+ L+ VP+++ ++ +G P+ GV
Sbjct: 98 LDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLG---------PVPDGVD 148
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT 292
+L + G + L + P D+A + YT GTTG PKG + +H + IA++A L
Sbjct: 149 LLAAAA--KFGPAPLVAAA--LPPDIAGLAYTGGTTGKPKGVMGTHRS-IATMAQIQLAE 203
Query: 293 KFYPSDVYISYL---PLAH 308
+P+D +L PL+H
Sbjct: 204 WEWPAD--PRFLMCTPLSH 220
|
Length = 524 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 9e-09
Identities = 50/147 (34%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA- 471
+R++G G + + V + LK G EGYG+TET ++Q H P+
Sbjct: 307 LRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTET---MAQT--------HSNPPDRPK 355
Query: 472 --C-EIKLVDV------PEMNYTSEDQPCPR-GEICVRGPLIFKGYYKDEIQTKEV-IDE 520
C I V PE T E+ P GEI V GP +FKGY+ T E I+
Sbjct: 356 LQCLGIPTFGVDARVIDPE---TLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEI 412
Query: 521 DG--WFHTGDIGMWIPGGRLKIIDRKK 545
DG +F TGD+G G I DR K
Sbjct: 413 DGKRFFRTGDLGRMDEEGYFFITDRLK 439
|
Length = 546 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 9e-09
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 27/201 (13%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAA 471
R + A+P DV + +G + E YG TE+ ++ D LS G VG
Sbjct: 274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESG-AVTFATSEDALSHPGTVGKAAPG 332
Query: 472 CEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLI--FKGYYKDEIQTKEVIDEDGWFHT 526
E++ VD + +P P+ GEI R F + K E + + ID G+ +
Sbjct: 333 AELRFVD-------EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAE--IDRGGFITS 383
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DS-FNS 583
GD+G G L + DRK+++ ++ G I +IE V V C V+G D+ F
Sbjct: 384 GDVGYLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGE 442
Query: 584 ALVAIV------SVDQDALKA 598
AL+A+V ++D+ ++A
Sbjct: 443 ALMAVVEPQPGATLDEADIRA 463
|
Length = 509 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 16/224 (7%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TY E + L G+ G + ++ N P++ IV + VP+
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--DQIPSLPITTGVQ 232
+ Y +N A + + + Q + +E +R ++V D P+LP+ ++
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETS-LRHVIVTSLADVLPAEPTLPLPDSLR 178
Query: 233 ILTYS-----NLLS--QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--- 282
+ +LL + + P PP D +A + YT GTTG PKG + +++
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTA 238
Query: 283 ASVAGATLGTKFYPSDVYISYLPLAHIY-ERANQVMTVYSGVAV 325
A+ + V++S+LP I E + ++SG +
Sbjct: 239 AAAYAVAVVGG--EDSVFLSFLPEFWIAGENFGLLFPLFSGATL 280
|
Length = 567 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
KPDD ATI ++SG+ G PKG +LSH N+++++ + DV +S LP H
Sbjct: 776 GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834
|
Length = 1146 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 16/169 (9%)
Query: 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV-GSPNAAC 472
F+ +GA P+ +++ G + +GMTE + +++ D+ + G P
Sbjct: 315 FLCAGA-PIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGV 373
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
E+K++D + +GE VRG F GY K D +GWF TGD+
Sbjct: 374 EVKVID-------ANGAKLSQGETGRLLVRGCSNFGGYLKRP--HLNSTDAEGWFDTGDL 424
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
G ++I R K++ + GE I +IEN+ + V Q +
Sbjct: 425 AFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVAIVA 472
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 110/523 (21%), Positives = 181/523 (34%), Gaps = 99/523 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI----VDHACSAYSFISVPLY 169
++Y E + LI G+ +G+ E ++ V A AY VPL
Sbjct: 538 LSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAY----VPLD 593
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
D + Y+++ + V+ + L L VP + SL +
Sbjct: 594 PEYPQDRLAYMLDDSGVRLLLTQSHLLAQL-----PVP------------AGLRSLCLDE 636
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+L G S P PD++A + YTSG+TG PKG +SHG L V
Sbjct: 637 PADLL-------CGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIA 689
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCS 349
L LA A+ M + S A
Sbjct: 690 ------------ERLQLA-----ADDSMLMVSTFAFDL---------------------G 711
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
V L+ + +G T + R+ AA A + + PS L+
Sbjct: 712 VTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPS-HLQALLQASRVALP 770
Query: 410 GGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETSCLISQLD----EGDNLSGH 464
+ + G + L D+L + G R+ YG TET+ +S + E D +
Sbjct: 771 RPQRALVCGGEA-LQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVP 829
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKE--VID 519
+G P A + ++D P P GE+ + G + +GY++ T E V D
Sbjct: 830 IGQPLANLGLYILD-------HYLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPD 882
Query: 520 EDG-----WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQC 574
G + TGD+ + G ++ + R + K+ +G I +IE V +
Sbjct: 883 PFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREA 941
Query: 575 FV--YGDSFNSALVAIVSVDQ--DALKAWAASEGIQYENLEQL 613
V LVA + D + A + ++ + + L
Sbjct: 942 VVLAQPGDAGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVL 984
|
Length = 3956 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 2e-08
Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 34/233 (14%)
Query: 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETS-- 449
PS + L+ L +R + G L +++ + ++ G R+ YG TET+
Sbjct: 192 PS-LLRALLDALEPAALPS-LRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVD 249
Query: 450 CLISQLDEGDNLSGHV--GSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIF 504
++D D G V G P A + ++D + +P P GE+ + G +
Sbjct: 250 VTYHEVDPDDLDGGSVPIGRPIANTRVYVLD-------EDLRPVPVGVPGELYIGGAGVA 302
Query: 505 KGYYKDEIQTKE--VID---EDG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557
+GY T E V D G + TGD+ W+P G L+ + R + K+ G I
Sbjct: 303 RGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIR-GYRIE 361
Query: 558 AEKIENVYAKCKFVGQCFV---YGDSFNSALVA-IVS-----VDQDALKAWAA 601
+IE V + V + LVA +V +D L+A+ A
Sbjct: 362 LGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAELRAFLA 414
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
+P+D A I +TSG+ G PKG V SH +L+A+V F P+D ++S LPL H
Sbjct: 361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFH 417
|
Length = 718 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 49/178 (27%), Positives = 63/178 (35%), Gaps = 52/178 (29%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGR------VTEGYGMTETSCLISQLDEG--------- 458
R G GA + PDVL F YG+ E + +S G
Sbjct: 302 RVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVD 361
Query: 459 -DNLSGH---VGSPNAA--------C-------EIKLVDVPEMNYTSEDQPCPR---GEI 496
D L V C EI++ + P P G I
Sbjct: 362 RDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-------EAGMPLPERVVGHI 414
Query: 497 CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-----GRLK--IIDRKKNI 547
CVRGP + GY++DE V+ DGW TGD+G + G GR K II +NI
Sbjct: 415 CVRGPSLMSGYFRDEESQD-VLAADGWLDTGDLGYLLDGYLYITGRAKDLIIINGRNI 471
|
Length = 579 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 3e-08
Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 19/190 (10%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISV--PLYDTL 172
TY E + + L G+ KG + ++ PE A ++ PL++
Sbjct: 75 TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFA--LLGALKNGAIVGPLFEAF 132
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL--SEVPTVRLIVVIGGIDDQIPSLPITTG 230
+AV+ + + + + T +LL ++P+++ ++++G ++ P
Sbjct: 133 MEEAVRDRLEDSEAKVLI----TTPALLERKPADDLPSLKHVLLVGEDVEEGP------- 181
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290
L ++ L+ Q +D A + YTSG+TG PKG + H ++
Sbjct: 182 -GTLDFNALMEQASDEF-DIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKY 239
Query: 291 GTKFYPSDVY 300
+ DVY
Sbjct: 240 VLDLHEDDVY 249
|
Length = 570 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 9e-08
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 20/69 (28%)
Query: 487 EDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG------------- 530
E + P GEICV GP +F GYY + + DGWF TGD+G
Sbjct: 357 EGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGR 415
Query: 531 ---MWIPGG 536
M+I GG
Sbjct: 416 ASDMYISGG 424
|
Length = 528 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 207 PTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSG 266
P+VR +V +GG + G T + LL G + P + PDD+A I +TSG
Sbjct: 135 PSVRRLVTVGG--------RLLWGGT--TLATLLRDGAAAPFPMADLAPDDMAAILFTSG 184
Query: 267 TTGTPKGAVLSHGNLIASV 285
+TGTPKG V +HG A +
Sbjct: 185 STGTPKGVVYTHGMFEAQI 203
|
Length = 552 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 489 QPCP---RGEICVRGPLIFKGYYKDEIQTKE--VIDEDG--WFHTGDIGMWIPGGRLKII 541
+ CP GE+ + G + GY+ D T E + G + TGD+G + P G ++ +
Sbjct: 319 RDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFL 378
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ--CFVYGDSFNSALVAIV------SVDQ 593
R + K+ +G + +IE A+ V + V GD AL A V +VD
Sbjct: 379 GRADHQVKI-RGYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDA 437
Query: 594 DALKAWAA 601
L+A A
Sbjct: 438 AVLRAALA 445
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 223 PSLPITTGVQILTYSNLLSQ------GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVL 276
LP+ G++ L +L Q G S+ P P ++A + YTSG+TG PKGA
Sbjct: 1683 ARLPLPDGLRSL----VLDQEDDWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGN 1738
Query: 277 SHGNLIASVAGATLGTKFYPSDVYISYLPLA 307
HG L+ + + +DV + + A
Sbjct: 1739 RHGALVNRLCATQEAYQLSAADVVLQFTSFA 1769
|
Length = 3956 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
R+R++ +GA L + FG R+ EGYG+TE + ++S G VG
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPG 539
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDE---------IQTKEVIDEDG 522
+ +L+ VP + E G + ++GP I GY + E + E G
Sbjct: 540 MDARLLSVPGI----EQG----GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERG 591
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK 567
W+ TGDI + G ++I R K K+A GE ++ E +E +
Sbjct: 592 WYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVEQLALG 635
|
Length = 718 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPLA 307
P PDD+A + Y+SG+T P+G +++H L+A++ + G K P D +S+LP
Sbjct: 169 ALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFY 228
Query: 308 H 308
H
Sbjct: 229 H 229
|
Length = 579 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 28/203 (13%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL--ISQLDEGDNLSGHVGSPN 469
+R + G ++D R+ YG TE + S+L G ++ +G P
Sbjct: 209 SLRTLILGGEACPQALVDRWSKP--RRLLNTYGPTEATVTATASRLTPGKPVN--IGRPL 264
Query: 470 AACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGW--- 523
++D P GE+C+ GP + +GY T E D +
Sbjct: 265 PNYTCWVLDPDLEP------LVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLN 318
Query: 524 ------FHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ---C 574
+ TGD+ ++ G L+ + RK + K+ +G+ I +IE V V
Sbjct: 319 NPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKI-RGQRIELGEIEAVLRALPGVVVAAVV 377
Query: 575 FVYGDSFNSALVAIVSVDQDALK 597
+ D LVA ++VD A
Sbjct: 378 LLLDDPGGKQLVAFLAVDGAAGG 400
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 26/204 (12%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYGE + GL G+ +G + + N PE+ V A P+ L
Sbjct: 12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQ 232
+ YIV+ + + + ++ +E+P V L++V+ G +P G +
Sbjct: 72 AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAG---PVP------GFR 122
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVA--TICYTSGTTGTPKGAV--LSHG----NLIAS 284
+Y L+ QP +P D+ A + Y+SGTTG PKG L
Sbjct: 123 --SYEEALAA-----QPDTPI-ADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMM 174
Query: 285 VAGATLGTKFYPSDVYISYLPLAH 308
+A G P VY+S PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198
|
Length = 502 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
PDD+A + YTSG+TG PKG ++ H L+ +A
Sbjct: 92 PDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 50/191 (26%), Positives = 65/191 (34%), Gaps = 38/191 (19%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
G+ KG + L NRPE+L + LG AV ++N
Sbjct: 83 GVGKGDVVALLMENRPEYLAAWLGLA-----------KLG--AVVALLNTQ--------- 120
Query: 194 QTLNSLLSCLSEVPTVRLIV----------VIGGIDDQIPSLPIT--TGVQILTYSNL-- 239
Q L L+ V LIV + T Y +L
Sbjct: 121 QRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAA 180
Query: 240 LSQGRSNLQPFSPPK--PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS 297
+ G P S D A YTSGTTG PK AV+SH + ++ G + P
Sbjct: 181 AAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPD 240
Query: 298 DVYISYLPLAH 308
DV LPL H
Sbjct: 241 DVLYCCLPLYH 251
|
Length = 600 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
PDD A + YTSG+TG PKG V++H N+ +
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL 128
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 418 SGASPLSPDVLDFLKICF--GGRVTEGYGMTET--SCLIS---QLDEG----DNLSGH-V 465
S +P+ V++ + + YG TE I L DN +G V
Sbjct: 295 SAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICV 354
Query: 466 GSPNAACEIKLVDVPE--MNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKE--VI 518
G P E++++ + + + + GEI V GP++ + YY T+ +
Sbjct: 355 GRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIP 414
Query: 519 DEDG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEY--IAAEKIENVY---AKCKFV 571
D G W GD+G GRL RK + + A G I E+I N + + V
Sbjct: 415 DGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALV 474
Query: 572 G 572
G
Sbjct: 475 G 475
|
Length = 552 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 7e-07
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 32/151 (21%)
Query: 443 YGMTETSCLISQ-------LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE 495
YG TE + ++ LD+ L +G + ++D E + + GE
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLP--IGYAKPDSPLLIID-EEGTKLPDGEQ---GE 346
Query: 496 ICVRGPLIFKGYYKDEIQTKEV-IDEDGW--FHTGDIG-----MWIPGGRLKIIDRKKNI 547
I + GP + KGY + +T E DG +HTGD G + GR ID
Sbjct: 347 IVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLEDGLLFYQGR---ID----- 398
Query: 548 F--KLAQGEYIAAEKIENVYAKCKFVGQCFV 576
F KL G I E+IE + +V V
Sbjct: 399 FQIKLN-GYRIELEEIEQNLRQSSYVESAVV 428
|
Length = 503 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 225 LPIT-TGVQILTYSNLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
LP+ G+ ++T L + K DD I +TSGTTG PKG +SH NL
Sbjct: 109 LPLEILGIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNL 168
Query: 282 I 282
+
Sbjct: 169 V 169
|
Length = 503 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH 278
DQ+P + L Y+ L+ P +P A I +TSG+TG PKG ++
Sbjct: 563 ADQLPRFADVPDLTSLCYNAPLA--PQGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQ 620
|
Length = 1296 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
VR ++ G +++ ++ + V + + RS +PP A + T+G+T
Sbjct: 109 VRTVLSHGSHLERLRAVD--SSVTVHDLATAAHTNRS--ASLTPPDSGGPAVLQGTAGST 164
Query: 269 GTPKGAVLSHGNLIASVAG--ATLGTKFYPSDVYISYLPLAH 308
GTP+ A+LS G +++++ G A +G +DV S+LPL H
Sbjct: 165 GTPRTAILSPGAVLSNLRGLNARVGLD-AATDVGCSWLPLYH 205
|
Length = 525 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 31/81 (38%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 251 SPPKPDDV---ATIC--YTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305
PP DDV + YTSGTTG PK AV+ H AGA P DV LP
Sbjct: 94 EPPSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLP 153
Query: 306 LAHIYERANQVMTVYSGVAVG 326
L Y A +M V + G
Sbjct: 154 L---YHSAGGIMGVGQALLHG 171
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-06
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 223 PSLPITTGVQILTYSNLLS-QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
LPI G+ L +G P PD++A + YTSG+TG PKG +SHG+L
Sbjct: 4660 QRLPIPDGLASLALDRDEDWEGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSL 4719
Query: 282 IASVAGATLGTKFYPSDVYISYLPLA 307
+ + + P D + ++ +
Sbjct: 4720 VNHLHATGERYELTPDDRVLQFMSFS 4745
|
Length = 5163 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET-SCLISQLDEGDNLSGHVGSPN 469
+R + S PL+P+V+ + + G + + + TET + +I+ G +G P
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266
Query: 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVIDEDGWFHTG 527
E +++ T P GE+ ++ P +F+GY +E + DGW+ TG
Sbjct: 267 PGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSF-VDGWYLTG 325
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D+ G + R ++ K A G + ++E+ + V + V G
Sbjct: 326 DLAYRDEDGYFWFVGRADDVIKTA-GHLVGPFEVESALMEHPAVAEAGVIG 375
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 74/321 (23%), Positives = 121/321 (37%), Gaps = 61/321 (19%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYER 312
K + I +TSGTTG PK A SH +L + PSD+ + I
Sbjct: 172 KSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAA 231
Query: 313 ANQVMTVYSGVAVGFY----QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
+ + + A F + D ++ ++ T FCS P +Y
Sbjct: 232 IWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVY-------------- 277
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
R+ +Q + S K S +R +G PL+P+VL
Sbjct: 278 -----RML------VQQDLTSYKFKS------------------LRHCVTGGEPLNPEVL 308
Query: 429 DFLKICFGGRVTEGYGMTETSCLISQLDEGDNL-SGHVGSPNAACEIKLVDVPEMNYTSE 487
+ K G + EGYG TET LI +G + G +G + +++++D N
Sbjct: 309 EQWKAQTGLDLYEGYGQTETG-LICANFKGMKIKPGSMGKASPPYDVQIIDD-NGNVLP- 365
Query: 488 DQPCPRGEICVR-GPL----IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
P G+I +R P +F Y + +T I D + TGD G+ G +
Sbjct: 366 --PGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWFVG 422
Query: 543 RKKNIFKLAQGEYIAAEKIEN 563
R ++ + G I ++E+
Sbjct: 423 RADDVI-NSSGYRIGPFEVES 442
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
DG+V + TY E + SGL G+ KG +G+Y PE ++ A + I
Sbjct: 2 DGSVRTW---TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFCV 192
+VP++ GPDAV + A + +
Sbjct: 59 AVPIFSGFGPDAVATRLQDAEAKVLITA 86
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 39/193 (20%)
Query: 412 RVRFM-GSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVG-SP 468
R+R M G+G L PD+ D + FG R+ E Y +E + + N G VG P
Sbjct: 315 RLRLMIGNG---LRPDIWDEFQQRFGIPRILEFYAASEGNVGFINVF---NFDGTVGRVP 368
Query: 469 -NAACEIKLVDVPEMNYTSED---------QPCPRGEICVRGPLI--------FKGYYKD 510
A +V + + + + GE+ G LI F GY
Sbjct: 369 LWLAHPYAIV---KYDVDTGEPVRDADGRCIKVKPGEV---GLLIGRITDRGPFDGYTDP 422
Query: 511 EIQTKEVI-----DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY 565
E K+++ D WF+TGD+ G + +DR + F+ +GE +A ++EN
Sbjct: 423 EASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENAL 481
Query: 566 AKCKFVGQCFVYG 578
+ V + VYG
Sbjct: 482 SGFPGVEEAVVYG 494
|
Length = 600 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
P DDVA + TSGTTGTPKGA+L+ L AS A AT
Sbjct: 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTAS-ADAT 67
|
Length = 358 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 203 LSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC 262
+++ PT+R ++V G + L P P +VA
Sbjct: 148 VAKHPTLRHVIVAGEAEHPSVLE------------AALCHPAGLFTPAPPADAGEVAFFQ 195
Query: 263 YTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310
+ GTTGTPK +H + SV + F VY+ LP AH +
Sbjct: 196 LSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNF 243
|
Length = 542 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 41/187 (21%)
Query: 411 GRVRFMGSGASPLSPDVLD-FLKIC--FG---GRVTEGYGMTETSCLIS----------- 453
G +R +G P+ D + F FG G YG+ E++C ++
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331
Query: 454 --QLDEGDNLSGH--VGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIF 504
D+G H +G+P E+++ + D GEI +RG +
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRI--------SPGDGAAGVAGREIGEIEIRGASMM 383
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
GY ID D WF TGD+G + GG L + R K + +A G I +IE V
Sbjct: 384 SGYLGQA-----PIDPDDWFPTGDLGYLVDGG-LVVCGRAKELITVA-GRNIFPTEIERV 436
Query: 565 YAKCKFV 571
A+ + V
Sbjct: 437 AAQVRGV 443
|
Length = 525 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHG---NLIASV 285
P PDD+A + +TSG+TG PKG +++H N I V
Sbjct: 119 PPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDV 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 441 EGYGMTETSCLISQLDEGDNLSGH-VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVR 499
E YG +E S + + +DE + VG P ++++ + E Q G + V+
Sbjct: 284 EFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAG----EEVQKGEIGTVYVK 339
Query: 500 GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAE 559
P F GY + +E ++ DGW D+G G + I+ R+KN+ L G I E
Sbjct: 340 SPQFFMGYIIGGVLARE-LNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGINIFPE 397
Query: 560 KIENVYAKCKFVGQCFVYG--DSF-NSALVAIV--SVDQDALKAW 599
+IE+V + V + V G DS+ VAI+ S + LK++
Sbjct: 398 EIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSF 442
|
Length = 487 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 225 LPITTGVQILTYSNLLS-QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
LP+ GV L + P +++A + YTSG+TG PKG +SHG L+A
Sbjct: 2114 LPLPAGVARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVA 2173
Query: 284 SVAGATLGTKFYPSDVYISYLPLA 307
A + P+D + ++ +
Sbjct: 2174 HCQAAGERYELSPADCELQFMSFS 2197
|
Length = 5163 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 223 PSLPITTGVQILTYSN--LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN 280
LP+ GVQ+L +G S P + P+++A + YTSG+TG PKGA H
Sbjct: 620 RKLPLAAGVQVLDLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRA 679
Query: 281 LIASV 285
L +
Sbjct: 680 LSNRL 684
|
Length = 5163 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 26/203 (12%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC--SAYSFISVPLYDTL 172
TY E + G+ +G + ++ N +L V A S + V + L
Sbjct: 26 TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH--L 83
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
P YIV+ + +A+ L+ + L + P VR +V+ G +
Sbjct: 84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEG--------- 134
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDV--ATICYTSGTTGTPKG--AVLSHGNLIASVAGA 288
+ Y+ ++ P + P D+ + Y+SGTTG PKG L +
Sbjct: 135 FVGYAEAVAG-----LP-ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLT 188
Query: 289 TLGTKFYPSD---VYISYLPLAH 308
+ + VY+S PL H
Sbjct: 189 AFLQRLWGFRSDMVYLSPAPLYH 211
|
Length = 511 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 38/157 (24%), Positives = 56/157 (35%), Gaps = 22/157 (14%)
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 189
L G+ KG I ++ N + A + VP PD V Y+ + +A+
Sbjct: 49 LAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAM 108
Query: 190 FCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
C + + P + +V IGG + L +L G
Sbjct: 109 ICHADFPEHAAAVRAASPDLTHVVAIGGA-------RAGLDYEALVARHL---GA----- 153
Query: 250 FSPPKP-----DDVATICYTSGTTGTPKGAVLSHGNL 281
DD +TSGTTG PK AVL+HG +
Sbjct: 154 --RVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQM 188
|
Length = 528 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
P+D A + +TSGTTG PKG + H ++A A A P DVY
Sbjct: 88 PEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY 133
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 43/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD-----HACSAYSFISVPL 168
++Y E + LI G+ +G+ V R +IV A AY VPL
Sbjct: 3121 LSYAELNRRANRLAHRLIAIGVGPDVLVGVA-VERSVEMIVALLAVLKAGGAY----VPL 3175
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + Y++ + V+ + T LL LP
Sbjct: 3176 DPEYPRERLAYMIEDSGVKLLL----TQAHLLE----------------------QLPAP 3209
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
G LT L G S P + +++A + YTSG+TG PKG + HG L
Sbjct: 3210 AGDTALTLDRLDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGAL 3262
|
Length = 3956 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
DD A I YTSGTTG PKG V +H A
Sbjct: 99 KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAA 130
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 196 LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKP 255
+ + +P++ +VV+ + + L +S + F
Sbjct: 178 REKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLE--FERLPF 235
Query: 256 DDVATICYTSGTTGTPKGAVLSHG 279
D I Y+SGTTG PK V G
Sbjct: 236 DHPLWILYSSGTTGLPKCIVHGAG 259
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 12/175 (6%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDT-L 172
+TY E + GL+ G+ G + + N ++ + + L +T
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNH-RGFVLALYAAGKVGARIILLNTGF 133
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
+ + V+A+ LLS L RL G DD PS
Sbjct: 134 SGPQLAEVAAREGVKALV-YDDEFTDLLSALPP-DLGRLRAWGGNPDDDEPSGS-----T 186
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
T +L++ + P PPKP + + TSGTTGTPKGA + +A +AG
Sbjct: 187 DETLDDLIAGSSTAPLP-KPPKPGGI--VILTSGTTGTPKGAPRPEPSPLAPLAG 238
|
Length = 549 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIA 283
PDD+A + YTSG+TG PKG + H N A
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAA 132
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
PQ LL L T+ +V+ G ++ +L L
Sbjct: 85 PQLPQPLLEELLPSLTLDFALVLEG-ENTFSALT------------SLHLQLVEGAHAVA 131
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309
+P +AT+ TSG+TG PK AV + +AS G F D ++ LPL H+
Sbjct: 132 WQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHV 188
|
Length = 458 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS-CLISQLDEGDNLSGHVGSPNAA 471
++ + S LSP++ FG + YG TE + I+ ++ G VG P
Sbjct: 325 LKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKG 384
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+K++D PRG I V F+GY + K++I DG +GD
Sbjct: 385 VTVKILD-------ENGNEVPRGVVGRIFVGNGFPFEGYTDG--RDKQII--DGLLSSGD 433
Query: 529 IGMWIPGGRLKIIDR 543
+G + G L + R
Sbjct: 434 VGYFDEDGLLFVDGR 448
|
Length = 549 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 80/428 (18%), Positives = 141/428 (32%), Gaps = 84/428 (19%)
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
P+ L+ + E +L+ + LP+ GVQ+L L +G N +P
Sbjct: 3139 PEYPEERLAYMLEDSGAQLL-----LSQSHLRLPLAQGVQVL----DLDRGDENYAEANP 3189
Query: 253 PK---PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309
P+++A + YTSG+TG PKG + H L +
Sbjct: 3190 AIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWM--------------------- 3228
Query: 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVF---CSVPRLYNRIYAGITSAVR 366
L L+ T F V L+ + +G +
Sbjct: 3229 --------------------QQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLA 3268
Query: 367 TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
R+ + + PS + L + G A P D
Sbjct: 3269 GPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALP--AD 3326
Query: 427 VLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH--VGSPNAACEIKLVDVPEMNY 484
+ ++ G + YG TE + ++ + +G P A ++D
Sbjct: 3327 LQQ--QVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILD------ 3378
Query: 485 TSEDQPCPRG---EICVRGPLIFKGYYKDEIQTKEVIDEDGW------FHTGDIGMWIPG 535
+P P G E+ + G + +GY+ T E D + + TGD+ +
Sbjct: 3379 -GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRAD 3437
Query: 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVD--- 592
G ++ I R + K+ +G I +IE + +V + V + +V D
Sbjct: 3438 GVIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVVPEDEAG 3496
Query: 593 --QDALKA 598
++ALKA
Sbjct: 3497 DLREALKA 3504
|
Length = 5163 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHG------NLIASVAGATLGTKFYPSDVYISYLPLAH 308
PDD A + YTSGTTG PKG +S N ++ + Y + +PL H
Sbjct: 86 PDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTY------TCMPLYH 139
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
DGT EY T+G+ A + + L G+ +G +G+Y PE I A +
Sbjct: 1 DGTREEY---TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAV 57
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFC 191
SVPL GPDAV++ + + + +
Sbjct: 58 SVPLSVLFGPDAVEHRLRDSGARVLVT 84
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Query: 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-- 295
+L S S+ +P P A + YTSG+T TP G ++SH N+IA+ L + ++
Sbjct: 145 DLDSPRGSDARPRDLPST---AYLQYTSGSTRTPAGVMVSHRNVIANF--EQLMSDYFGD 199
Query: 296 -----PSDVYI-SYLPLAH 308
P D + S+LP H
Sbjct: 200 TGGVPPPDTTVVSWLPFYH 218
|
Length = 578 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 14/154 (9%)
Query: 126 VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHAS 185
GL G+ G C+ L N + +A +VP+ P+ + YI+ +
Sbjct: 24 AAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSG 83
Query: 186 VQAVFCVPQTLNSLLSCLSE------VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
+ + L+ L S L VPT I I + + P + +
Sbjct: 84 ARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGA----IDWEGW 139
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273
L+Q +P+ P ++ YTSGTTG PKG
Sbjct: 140 LAQQ----EPYDGPPVPQPQSMIYTSGTTGHPKG 169
|
Length = 509 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 34/152 (22%)
Query: 443 YGMTE-----TSCLISQ--LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--- 492
YG TE TS I+Q LD+ L +G + ++D E +P P
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLP--IGFAKPDMNLFIMD-------EEGEPLPEGE 341
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVI--DEDGW-FHTGDIG-----MWIPGGRLKIIDRK 544
+GEI + GP + KGY + +T E E + TGD G GR +D +
Sbjct: 342 KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDGQLFYQGR---LDFQ 398
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
KL G I E IE + ++ V
Sbjct: 399 ---IKL-HGYRIELEDIEFNLRQSSYIESAVV 426
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 28/144 (19%)
Query: 413 VRFMGSGASPLSPDV----LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVG 466
+R A+P +V +D+ +G + E Y +E ++ + D L+ G VG
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDW----WGPIIHEYYASSE-GGGVTVITSEDWLAHPGSVG 318
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG------YYKDEIQTKEVIDE 520
E++++D + P GEI G + F+ Y+ D +T +
Sbjct: 319 KA-VLGEVRILD-------EDGNELPPGEI---GTVYFEMDGYPFEYHNDPEKTAAARNP 367
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRK 544
GW GD+G G L + DRK
Sbjct: 368 HGWVTVGDVGYLDEDGYLYLTDRK 391
|
Length = 502 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 225 LPIT-TGVQILTYSNL--LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
L I G QI+T S L + K DD I YTSG+TG PKG +SH NL
Sbjct: 107 LSIDAVGTQIITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNL 166
Query: 282 I 282
+
Sbjct: 167 V 167
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 31/97 (31%)
Query: 249 PFSPPKP---DDVATICYTSGTTGTPKGAVLSH-GNLIASVAGATLGTKFY----PSDV- 299
P+ P+P +D I YTSG+TG PKG V + G L+ A K+ P DV
Sbjct: 215 PYCEPEPMDAEDPLFILYTSGSTGKPKGVVHTTGGYLV----YAATTFKYVFDIHPDDVY 270
Query: 300 -------------YISYLPLAHIYERANQVMTVYSGV 323
YI Y PLA+ A VM Y G
Sbjct: 271 WCTADIGWITGHSYIVYGPLAN---GATTVM--YEGA 302
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 82/357 (22%), Positives = 127/357 (35%), Gaps = 100/357 (28%)
Query: 250 FSPPKP--DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLA 307
+ PP+ D +A + YTSG+T P G ++H NL +V + D +S+LP
Sbjct: 172 WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFF 231
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
H + + + G + M P F P + R A
Sbjct: 232 H---DMGLITVLLPALL-----GHYITFMS------PAAFVRRPGRWIRELA-------R 270
Query: 368 SGGLRERLFNAAYN-AKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLS 424
G F+AA N A + A G K+ P D + +K L +G+ P+S
Sbjct: 271 KPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLD---LSNVKGLL--------NGSEPVS 319
Query: 425 PDVLDFLKICFG------GRVTEGYGMTETSCLIS----------------QLDEGDNLS 462
P + F + YGM E + +S +L+ G +
Sbjct: 320 PASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVE 379
Query: 463 GHVGSPNAACEIK-----------LVDVPEMNYTSEDQPCPR-GEICVRGPLIFKGYYKD 510
+PNA ++ +VD PE T+ + P + GEI + G I GY+
Sbjct: 380 VPADAPNAVAQVSAGKVGVSEWAVIVD-PE---TASELPDGQIGEIWLHGNNIGTGYWGK 435
Query: 511 EIQTKEVI-----------------DEDGWFHTGDIGMWIPG-----GRLK---IID 542
+T D+ W TGD G++ G GR+K IID
Sbjct: 436 PEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYFDGELYITGRVKDLVIID 492
|
Length = 631 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 251 SPPKPDDVATICYTSGTTGTPKGAVLSH-----GNLIASVAGATLGTKFYPSDVYISYLP 305
S A YTSGTTG PK A +SH + + S+ G T DV + LP
Sbjct: 137 SGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGMLSLCGVT------ADDVVYTTLP 190
Query: 306 LAH 308
L H
Sbjct: 191 LYH 193
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 12/200 (6%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC--LISQLDEGDNL---SGHVGS 467
+R +G G S + F++ G R + YG++ET C L D+G + +G VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIEAT-GVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR 346
Query: 468 PNAACEIKLVDVPEMNYTSED--QPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
P ++ L + T+ G + ++ P GY+ + +T EV+ DGW +
Sbjct: 347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVN 405
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ--CFVYGDSFNS 583
TGD+ G I R + + G IA ++++ + V + C+ D
Sbjct: 406 TGDLLERREDGFFYIKGRSSEMI-ICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFG 464
Query: 584 ALVAIVSVDQDALKAWAASE 603
ALV + V L AA
Sbjct: 465 ALVGLAVVASAELDESAARA 484
|
Length = 540 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 56/202 (27%), Positives = 81/202 (40%), Gaps = 29/202 (14%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG---HVGSPN 469
+R + S L P + +G + GYG TE I L +L VG P
Sbjct: 294 LRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVG--IGALATPADLRDAPETVGKPV 351
Query: 470 AACEIKLVDVPEMNYTSEDQPC-PR--GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526
A C ++++D ++P PR G I V G L Y K V+D G T
Sbjct: 352 AGCPVRILD-------RNNRPVGPRVTGRIFVGGELAGTRYTDG--GGKAVVD--GMTST 400
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNS 583
GD+G GRL I+ R+ ++ ++ GE + +EN A V V G + F
Sbjct: 401 GDMGYLDNAGRLFIVGREDDMI-ISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGH 459
Query: 584 ALVAIV------SVDQDALKAW 599
L A V VD L+ +
Sbjct: 460 RLAAFVVLHPGSGVDAAQLRDY 481
|
Length = 516 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 695 | |||
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.98 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.97 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.95 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.94 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.91 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.81 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.8 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.71 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 98.89 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.87 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.31 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 98.22 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.51 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.31 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 96.11 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 93.19 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 85.47 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 85.36 |
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-116 Score=926.62 Aligned_cols=624 Identities=49% Similarity=0.831 Sum_probs=579.4
Q ss_pred CccccCCCCCc-cccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcC
Q 005468 56 WNVYRSSRSPL-KLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134 (695)
Q Consensus 56 ~~~~r~~~~~~-~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~g 134 (695)
+.+||+...+. .+... ...+..|+++.|.+.+..+|+.++|+.+...+ ..++|+|+||+|+.+++.++|++|+++|
T Consensus 53 ~~~~~s~~~~~~~~~~~--~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG 129 (691)
T KOG1256|consen 53 DGSRRSAVLPREELFSC--PFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLG 129 (691)
T ss_pred CCceeeeeccCCCCCCC--CCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhC
Confidence 45777776542 22111 24578999999999999999999999995444 4578999999999999999999999999
Q ss_pred CCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEec-ccchhHHHhccc--CCCCceE
Q 005468 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV-PQTLNSLLSCLS--EVPTVRL 211 (695)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~-~~~~~~~~~~~~--~~~~l~~ 211 (695)
+++++.|||++.|++||+++.+||..+|++.||||++++++++.||++++++.++||+ +.....+.+... .++.++.
T Consensus 130 ~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~ 209 (691)
T KOG1256|consen 130 VKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKA 209 (691)
T ss_pred CCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCcccee
Confidence 9999999999999999999999999999999999999999999999999999999999 666777777666 3788999
Q ss_pred EEEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCCCC-CCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhc-
Q 005468 212 IVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPF-SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT- 289 (695)
Q Consensus 212 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~- 289 (695)
+|.+++..+.........++.+++|+++++.|....... .+++|+|.|+|+|||||||+|||||+||+|+++.+....
T Consensus 210 iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~ 289 (691)
T KOG1256|consen 210 IIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFF 289 (691)
T ss_pred EEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhh
Confidence 999999988888888888999999999999998766666 488999999999999999999999999999999665322
Q ss_pred --cc---cccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHH
Q 005468 290 --LG---TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364 (695)
Q Consensus 290 --~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 364 (695)
.. ......|+++|+|||+|+++++.....++.|++++|+++|+..+.++|++.+||++.+||++|+++++.+.+.
T Consensus 290 ~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~ 369 (691)
T KOG1256|consen 290 LSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQ 369 (691)
T ss_pred hhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHH
Confidence 11 1223479999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HhcccchHHHHHHHHHHHHH-HHHhcCCCC--CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccc
Q 005468 365 VRTSGGLRERLFNAAYNAKK-QAMLSGKNP--SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTE 441 (695)
Q Consensus 365 ~~~~~~~~~~~~~~a~~~k~-~~~~~~~~~--~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~ 441 (695)
+.+++.+++++|++|+..|+ ..+..|... ..+||+++|+|+++.+|+++|.+++|++|+++++..+++..+||+|++
T Consensus 370 ~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~e 449 (691)
T KOG1256|consen 370 VQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLE 449 (691)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeee
Confidence 99999999999999999999 678888776 699999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCC
Q 005468 442 GYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED 521 (695)
Q Consensus 442 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~ 521 (695)
+||+|||++.++...+++...|++|.|+|+++++++|+++++|...+. .|||||||++||.|||+||+.|+++||+|
T Consensus 450 GYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~---~GEIcirG~~Vf~GYyK~p~~T~e~ideD 526 (691)
T KOG1256|consen 450 GYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGS---KGEICVRGPNVFMGYYKDPEKTAEAIDED 526 (691)
T ss_pred cccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCC---cceEEEecchhceeccCChHHHhhhhccc
Confidence 999999997777777777799999999999999999999999999997 89999999999999999999999999999
Q ss_pred CeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHH
Q 005468 522 GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601 (695)
Q Consensus 522 gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~ 601 (695)
||+||||+|+||++|.|+|+||+|++||+++||||.|+.||+++.+.+.|.+++|+|++.+.+++|+|+|+++..+.|+.
T Consensus 527 GWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~ 606 (691)
T KOG1256|consen 527 GWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAA 606 (691)
T ss_pred cccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHH
Q 005468 602 SEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADM 681 (695)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~l 681 (695)
.+++. ..++++|++..+++.+..+|.++.++++|.+++..+.|++.+++||++||++|||.|++|..+.++|+++|++|
T Consensus 607 ~~~~~-~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~m 685 (691)
T KOG1256|consen 607 KDGVK-GTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDEL 685 (691)
T ss_pred HccCc-hhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 88888 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcc
Q 005468 682 YAELS 686 (695)
Q Consensus 682 y~~~~ 686 (695)
|++.+
T Consensus 686 Y~~~~ 690 (691)
T KOG1256|consen 686 YKEIK 690 (691)
T ss_pred Hhhcc
Confidence 99865
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-112 Score=856.00 Aligned_cols=638 Identities=38% Similarity=0.633 Sum_probs=594.2
Q ss_pred CceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEee--------ecCc------
Q 005468 42 GYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVR--------VDGT------ 107 (695)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~--------~d~~------ 107 (695)
++.+++.....+.++.+|||....+.|.+. +.+...|++++|+..++++.++.++++|+. +||+
T Consensus 6 ~~~V~~~~~~n~~e~~p~Rnv~~~~~L~~~--~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~ 83 (678)
T KOG1180|consen 6 KYRVKAKPAANEHETAPYRNVRSFDGLVSP--PNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYE 83 (678)
T ss_pred hcccccCCCCCCCCCccccccccCCCccCC--CCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEe
Confidence 367777776667788999999886667654 467899999999999999999999999865 3553
Q ss_pred cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccc
Q 005468 108 VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSC-IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186 (695)
Q Consensus 108 ~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~-V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~ 186 (695)
.++|.|+||.|+.+++.++|++|.+.|+++++. |+|+++.+.+|+++++||++.+..+|.+|.+++.+.+.|-|+++++
T Consensus 84 Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~ 163 (678)
T KOG1180|consen 84 LGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETES 163 (678)
T ss_pred ccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccc
Confidence 678999999999999999999999999998775 9999999999999999999999999999999999999999999999
Q ss_pred cEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCC----CCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEE
Q 005468 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPS----LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC 262 (695)
Q Consensus 187 ~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 262 (695)
+.+||+.+.++++...+..++.+++||.+++.+..... .....++.+++|+++++.++....++.++.|+|+|+||
T Consensus 164 ~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IM 243 (678)
T KOG1180|consen 164 TAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIM 243 (678)
T ss_pred eEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEE
Confidence 99999999999998888899999999999965432211 12346789999999999999877777777999999999
Q ss_pred eccCCCCCCceEEechHHHHHHHHhhcccc-ccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCChhhHH-----
Q 005468 263 YTSGTTGTPKGAVLSHGNLIASVAGATLGT-KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLM----- 336 (695)
Q Consensus 263 ~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~----- 336 (695)
|||||||.||||+++|.|+++.+.+..... .+.+.|+++.++||+|++++.+.+.+++.|+++++-+ +..|.
T Consensus 244 YTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S--~~TLtdts~k 321 (678)
T KOG1180|consen 244 YTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSS--PLTLTDTSSK 321 (678)
T ss_pred EcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCC--cceecccchh
Confidence 999999999999999999999999887764 7889999999999999999999999999999999854 33322
Q ss_pred ------HHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcC
Q 005468 337 ------DDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410 (695)
Q Consensus 337 ------~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g 410 (695)
-++..+|||++.+||.+|+++.+.+..++...+.+.+.+|+.++.+|+..+......+.++|.++|+++|..+|
T Consensus 322 i~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lG 401 (678)
T KOG1180|consen 322 IKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLG 401 (678)
T ss_pred hccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999999999999999987667789999999999999999
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCC
Q 005468 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (695)
Q Consensus 411 ~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~ 490 (695)
++||++++||+||+++..+++..+++|++.++||+||+++..+...+.+...|.+|.|+++++++++|.++++|...+.|
T Consensus 402 G~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P 481 (678)
T KOG1180|consen 402 GNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP 481 (678)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeCCccchhccCChhhhhcccCC-CC--eeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhc
Q 005468 491 CPRGEICVRGPLIFKGYYKDEIQTKEVIDE-DG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK 567 (695)
Q Consensus 491 ~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~-~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~ 567 (695)
|+|||||+|++|+.|||+||+.|++.|.. || ||+|||+|++.+||.|.|+||+||++|+.+||||+++.||++|+.
T Consensus 482 -PrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s 560 (678)
T KOG1180|consen 482 -PRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRS 560 (678)
T ss_pred -CCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhc
Confidence 89999999999999999999999999977 89 999999999999999999999999999999999999999999999
Q ss_pred CcCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEE
Q 005468 568 CKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTL 647 (695)
Q Consensus 568 ~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~ 647 (695)
+|.|..++|++++....+||+|||++..+..|+.+.|++..+++++|++.++.+++.++|.+.++.++|.++++|..|++
T Consensus 561 ~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l 640 (678)
T KOG1180|consen 561 SPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVL 640 (678)
T ss_pred CcchhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEe
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCccCccccCChHHHHHHHHHHHHHHHHh
Q 005468 648 VLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAE 684 (695)
Q Consensus 648 ~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~~ 684 (695)
.+++||.|||++|...|++|+.++..|+++|++||++
T Consensus 641 ~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~~ 677 (678)
T KOG1180|consen 641 SPEPWTPENGLVTAALKLKRKEILAAYKKEIDRLYKE 677 (678)
T ss_pred cCCCcCCCccccHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999986
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-100 Score=872.86 Aligned_cols=646 Identities=84% Similarity=1.402 Sum_probs=579.6
Q ss_pred cCCceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHH
Q 005468 40 EQGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119 (695)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el 119 (695)
.+.||+++.++..++++.+||+...+.++.+.+++.+...|++++|+++++++||++|++.+...++..+.++++||+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el 84 (651)
T PLN02736 5 EQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEA 84 (651)
T ss_pred ccCcceeCCCCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHH
Confidence 45689999999999999999999888888887777788899999999999999999999764212344456788999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHH
Q 005468 120 GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL 199 (695)
Q Consensus 120 ~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 199 (695)
.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||+++.++.+++.+++++++++++|++.+....+
T Consensus 85 ~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~ 164 (651)
T PLN02736 85 GTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTL 164 (651)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877777
Q ss_pred HhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechH
Q 005468 200 LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHG 279 (695)
Q Consensus 200 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~ 279 (695)
......++.++.+++++.............+....+|+++++.+.....+.....++|+++|+|||||||.||||++||+
T Consensus 165 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~ 244 (651)
T PLN02736 165 LSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHG 244 (651)
T ss_pred HHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecH
Confidence 76666677788888775432111111112244567888887655432223344578999999999999999999999999
Q ss_pred HHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHH
Q 005468 280 NLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359 (695)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~ 359 (695)
++++.+......+++.++|++++++|++|++++...+.+++.|++++++++++..+++.|++++||+++++|++|+.+++
T Consensus 245 ~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~ 324 (651)
T PLN02736 245 NLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYD 324 (651)
T ss_pred HHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHH
Confidence 99999888877788899999999999999999988888999999999988899999999999999999999999999999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcc
Q 005468 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRV 439 (695)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v 439 (695)
.+...+...+.+++.+|++++..+...+..+..+...++++++++++..+|+++|.+++||+++++++.++++..+|+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~ 404 (651)
T PLN02736 325 GITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRV 404 (651)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCe
Confidence 98888888999999999999999888887777777888999999999999999999999999999999999998899999
Q ss_pred ccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC
Q 005468 440 TEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519 (695)
Q Consensus 440 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~ 519 (695)
+++||+||+++.++...+.+...+++|+|+|+++++|+|.+++.+...+.+++.|||+|+||++|.|||++|+.|++.|+
T Consensus 405 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~ 484 (651)
T PLN02736 405 LEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID 484 (651)
T ss_pred EEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc
Confidence 99999999987777666666778899999999999999977666666666667899999999999999999999999998
Q ss_pred CCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHHHHHH
Q 005468 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAW 599 (695)
Q Consensus 520 ~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~ 599 (695)
.||||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|.+|+|+|+..++.++|+|+++++.+.+|
T Consensus 485 ~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~ 564 (651)
T PLN02736 485 EDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAW 564 (651)
T ss_pred cCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHHH
Confidence 89999999999999999999999999999987899999999999999999999999999877789999999999999999
Q ss_pred HHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHH
Q 005468 600 AASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~ 679 (695)
++..+++..++.+.|+++++++.+.++|.+.+++++|++|++|++|++++++|+++||++|++||++|+++++.|+++|+
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~ 644 (651)
T PLN02736 565 AASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAIS 644 (651)
T ss_pred HHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHH
Confidence 99888877788999999999999999999999878999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 005468 680 DMYAEL 685 (695)
Q Consensus 680 ~ly~~~ 685 (695)
+||+++
T Consensus 645 ~~y~~~ 650 (651)
T PLN02736 645 DMYAEL 650 (651)
T ss_pred HHHhhc
Confidence 999876
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-98 Score=857.51 Aligned_cols=638 Identities=36% Similarity=0.632 Sum_probs=554.4
Q ss_pred CCceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEeee--------cC------
Q 005468 41 QGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRV--------DG------ 106 (695)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~--------d~------ 106 (695)
.+++++++.+..++. +|||+..+ .+... +.++..|+.++|.++++++||++|++++... ++
T Consensus 25 ~~~~~~~~~~~~~~~--~~r~~~~~-~~~~~--~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~ 99 (696)
T PLN02387 25 KKRGVPVDVGGEPGY--AIRNARFP-ELVET--PWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKL 99 (696)
T ss_pred ccceecCCCCCCCCC--ceecCccc-ccccc--CCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccc
Confidence 457888885555443 59999855 44433 3467899999999999999999999875311 22
Q ss_pred ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccc
Q 005468 107 TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186 (695)
Q Consensus 107 ~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~ 186 (695)
..++|+|+||+|+.+++.++|++|.++|+++||+|+|+++|++||+++++||+++|+++||++++++++++.++|+++++
T Consensus 100 ~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~ 179 (696)
T PLN02387 100 HLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEV 179 (696)
T ss_pred cCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCC
Confidence 23678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCC-CcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEecc
Q 005468 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSL-PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265 (695)
Q Consensus 187 ~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 265 (695)
+++|++.+....+......++.++.++++++........ ....++.+.+|+++...+.....+...+.++|+++|+|||
T Consensus 180 ~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTS 259 (696)
T PLN02387 180 TTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTS 259 (696)
T ss_pred CEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecC
Confidence 999999888887777766777889999987643211100 0123456678998887665433334455789999999999
Q ss_pred CCCCCCceEEechHHHHHHHHhhccc-cccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecC----C-----hhhH
Q 005468 266 GTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG----D-----NMKL 335 (695)
Q Consensus 266 GTTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~----~-----~~~l 335 (695)
||||.||||++||+|+++.+...... ..+.++|++++++|++|++++...+.+++.|+++.+... + ...+
T Consensus 260 GTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~ 339 (696)
T PLN02387 260 GSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGT 339 (696)
T ss_pred CCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCc
Confidence 99999999999999999988776544 357889999999999999999887777888888876331 1 2345
Q ss_pred HHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcC-----CCCCchhHHHHHHHHHhhcC
Q 005468 336 MDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG-----KNPSPMWDRLVFNKIKDKLG 410 (695)
Q Consensus 336 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~-----~~~~~~~d~l~~~~~~~~~g 410 (695)
++++++++||+++++|++++++.+.+.......+.+++.+|+.++..++..+... .....+||.++|+++++.+|
T Consensus 340 ~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 419 (696)
T PLN02387 340 KGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLG 419 (696)
T ss_pred hhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhC
Confidence 6789999999999999999999998888888888999999999999887765432 12347899999999999999
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCC
Q 005468 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (695)
Q Consensus 411 ~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~ 490 (695)
+++|.+++||+++++++.++++..+|++++++||+||+++.++...+.+...+++|.|+|+++++|+|.+++++...+.+
T Consensus 420 ~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~ 499 (696)
T PLN02387 420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKP 499 (696)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCC
Confidence 99999999999999999999998889999999999999877776666666789999999999999999888887776666
Q ss_pred CCcceEEEeCCccchhccCChhhhhccc--CCCC--eeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHh
Q 005468 491 CPRGEICVRGPLIFKGYYKDEIQTKEVI--DEDG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566 (695)
Q Consensus 491 ~~~GEl~v~g~~v~~gY~~~~~~t~~~~--~~~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~ 566 (695)
.+.|||+|+||++|.|||++|+.|+++| +.+| ||+|||+|++|+||+|+|+||+||+||+++|++|+|++||++|.
T Consensus 500 ~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~ 579 (696)
T PLN02387 500 MPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS 579 (696)
T ss_pred CCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh
Confidence 6789999999999999999999999998 4456 99999999999999999999999999987899999999999999
Q ss_pred cCcCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEE
Q 005468 567 KCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVT 646 (695)
Q Consensus 567 ~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~ 646 (695)
+||.|.+|+|+|++.+.+++|+|+|+++.+..|+++.++...++.++|+++++++.+.+++.+.+++.+|++|++|++|+
T Consensus 580 ~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~ 659 (696)
T PLN02387 580 VSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIK 659 (696)
T ss_pred cCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEE
Confidence 99999999999999889999999999999999999999887789999999999999999999998878999999999999
Q ss_pred EeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHH
Q 005468 647 LVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 683 (695)
Q Consensus 647 ~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~ 683 (695)
+++++||++||++||++|++|+.+++.|+++|++||+
T Consensus 660 l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 696 (696)
T PLN02387 660 LLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE 696 (696)
T ss_pred EECCCCCCCCCcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999995
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-97 Score=844.68 Aligned_cols=631 Identities=39% Similarity=0.700 Sum_probs=532.7
Q ss_pred CCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHH
Q 005468 52 DTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI 131 (695)
Q Consensus 52 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~ 131 (695)
.+.++++||++.....+. .+.+...|+.++|.++++++||++|++++...++..+.++++||+||.++++++|++|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~---~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~ 97 (666)
T PLN02614 21 RPSVGPVYRSIFAKDGFP---NPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLR 97 (666)
T ss_pred CCCCCCcccCcccccccC---CCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHH
Confidence 356788999887555543 13456789999999999999999999865211222345778999999999999999999
Q ss_pred HcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccC-CCCce
Q 005468 132 YHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVR 210 (695)
Q Consensus 132 ~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~-~~~l~ 210 (695)
++|+++||+|+|+++|++||++++|||+++|+++||+++.++++++.+++++++++++|++.+....+...... .+.++
T Consensus 98 ~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~ 177 (666)
T PLN02614 98 SVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMK 177 (666)
T ss_pred HcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999987765555433222 22367
Q ss_pred EEEEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc
Q 005468 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290 (695)
Q Consensus 211 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~ 290 (695)
.++.+++............+....+|++++..+.....+.....++|+++|+|||||||.||||++||+|+++.+.....
T Consensus 178 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~ 257 (666)
T PLN02614 178 TVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIR 257 (666)
T ss_pred EEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh
Confidence 77777542211000011123445788888765432222223356899999999999999999999999999988765443
Q ss_pred c-----cccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHH
Q 005468 291 G-----TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365 (695)
Q Consensus 291 ~-----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 365 (695)
. ..+.++|++++++|++|++++...+.+++.|+++++.++++..++++|++++||+++++|++|+.++..+...+
T Consensus 258 ~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~ 337 (666)
T PLN02614 258 LLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKL 337 (666)
T ss_pred hccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHH
Confidence 3 25678999999999999999977666788999999988899999999999999999999999999999888888
Q ss_pred hcccchHHHHHHHHHHHHHHHHhcCCCC---CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCcccc
Q 005468 366 RTSGGLRERLFNAAYNAKKQAMLSGKNP---SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTE 441 (695)
Q Consensus 366 ~~~~~~~~~~~~~a~~~k~~~~~~~~~~---~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~ 441 (695)
...+.+++.+|++++..+...+..+... .++++.++++++++.+|+++|.+++||+++++++.+++ +.+ ++++++
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~-~~~~~~~i~~ 416 (666)
T PLN02614 338 SDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFL-RVVACCHVLQ 416 (666)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHH-HHhcCCCEEe
Confidence 7788889999999998877666554322 36778899999999999999999999999998865544 445 589999
Q ss_pred ccccccccccccccCCCC-CCCCCcCCCccCcEEEEeecCCC--CCCCCCCCCCcceEEEeCCccchhccCChhhhhccc
Q 005468 442 GYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEM--NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518 (695)
Q Consensus 442 ~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~--~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~ 518 (695)
+||+||+++.++...+.+ ...+++|+|+|+++++|+|++++ ..++.|+ .|||+|+||++|.|||++|+.|++.|
T Consensus 417 ~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~---~GEl~vrGp~v~~GY~~~pe~T~~~f 493 (666)
T PLN02614 417 GYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTP---RGEICIRGKTLFSGYYKREDLTKEVL 493 (666)
T ss_pred eCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCC---CceEEEcCCcccccccCCHHHhhhhh
Confidence 999999986555444433 35689999999999999986554 3444444 89999999999999999999999999
Q ss_pred CCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHHHHH
Q 005468 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKA 598 (695)
Q Consensus 519 ~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~ 598 (695)
.||||+|||+|++|+||+|+|+||+||+||+++|++|+|++||++|.+||.|.+|+|+|++.+.+++|+|+|+.+.+..
T Consensus 494 -~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~ 572 (666)
T PLN02614 494 -IDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILER 572 (666)
T ss_pred -ccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHH
Confidence 5999999999999999999999999999998789999999999999999999999999998788999999999999999
Q ss_pred HHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHH
Q 005468 599 WAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAI 678 (695)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i 678 (695)
|+.++++. .++.++|+++++++.+.+++.+.+++++|++|++|++|+++++.||++||++|||+|++|+.+.+.|+++|
T Consensus 573 ~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i 651 (666)
T PLN02614 573 WAAENGVS-GDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVI 651 (666)
T ss_pred HHHhcCCC-cCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHH
Confidence 99999887 57889999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCC
Q 005468 679 ADMYAELSRSDPS 691 (695)
Q Consensus 679 ~~ly~~~~~~~~~ 691 (695)
++||++.+++-.+
T Consensus 652 ~~ly~~~~~~~~~ 664 (666)
T PLN02614 652 DEMYKTTNEKLAS 664 (666)
T ss_pred HHHHHhhhhhccc
Confidence 9999987765544
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-97 Score=837.49 Aligned_cols=627 Identities=25% Similarity=0.412 Sum_probs=535.4
Q ss_pred CceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHH
Q 005468 42 GYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGT 121 (695)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~ 121 (695)
.|+..++.+...++|.+||.....++ .+.....|+.++|.++++++||++|+... .++ ..++++||+||.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~p~~~Al~~~--~~g--~~~~~~Ty~el~~ 99 (746)
T PTZ00342 29 GYSEICEKATNENESSVYCMKDHKKK-----SSLYVYKHIMKLLLEKYKLNNNKIAIVEH--SCG--EPQNYITYGNFFK 99 (746)
T ss_pred eeeeEecCCCCCCCCCceecCchhhc-----ccccccchHHHHHHHHHhhcCCceeEecc--CCC--CCceeeeHHHHHH
Confidence 48889999998999999998775555 23456889999999999999999999753 112 2368899999999
Q ss_pred HHHHHHHHHHHc---CCCCC-----------CEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhcccc
Q 005468 122 ARTEVGSGLIYH---GISKG-----------SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQ 187 (695)
Q Consensus 122 ~~~~lA~~L~~~---gv~~g-----------d~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~ 187 (695)
++.++|++|.++ |+++| |+|+|+++|++||+++++||+++|+++||++++++++++.++|++++++
T Consensus 100 ~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~ 179 (746)
T PTZ00342 100 KVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLE 179 (746)
T ss_pred HHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCC
Confidence 999999999974 99998 9999999999999999999999999999999999999999999999999
Q ss_pred EEEecccchhHHHhcccCCCCceEEEEECCCCCCC-----------------CC--------------------------
Q 005468 188 AVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQI-----------------PS-------------------------- 224 (695)
Q Consensus 188 ~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~-----------------~~-------------------------- 224 (695)
+||++.+..+.+.+....++.++.++++++..... ..
T Consensus 180 ~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (746)
T PTZ00342 180 WLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLE 259 (746)
T ss_pred EEEEcHHHHHHHHHhhccCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99998888888877777788899999987532110 00
Q ss_pred --------------CCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc
Q 005468 225 --------------LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290 (695)
Q Consensus 225 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~ 290 (695)
.....+.....|+++.+.... ..+..+.+++|+++|+|||||||.||||++||+|+++.+.....
T Consensus 260 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~ 338 (746)
T PTZ00342 260 YDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT-NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCK 338 (746)
T ss_pred cchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc-CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhh
Confidence 000112234455555443211 12233457899999999999999999999999999988866543
Q ss_pred cc--ccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcc
Q 005468 291 GT--KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368 (695)
Q Consensus 291 ~~--~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 368 (695)
.. .....|++++++|++|++++...+.+++.|+++++++.++..++++|++++||++++||++|++|++.+...+...
T Consensus 339 ~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~ 418 (746)
T PTZ00342 339 HSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNL 418 (746)
T ss_pred cccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhc
Confidence 21 2235689999999999999988888899999999988899999999999999999999999999999998888888
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCCchhHHH--HHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccc
Q 005468 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL--VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMT 446 (695)
Q Consensus 369 ~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l--~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~T 446 (695)
+.+++.+|++++..+..... + ..+.+++.+ +|+++++.+|+++|.+++||+|+++++.++|+..+|++++++||+|
T Consensus 419 ~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlT 496 (746)
T PTZ00342 419 PPLKRFLVKKILSLRKSNNN-G-GFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLT 496 (746)
T ss_pred CHHHHHHHHHHHHHHHHhhc-C-CcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccC
Confidence 88999999999998877532 2 244666665 7999999999999999999999999999999998999999999999
Q ss_pred cccccccccCCCCCCCCCcCCCc-cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeee
Q 005468 447 ETSCLISQLDEGDNLSGHVGSPN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525 (695)
Q Consensus 447 E~~~~~~~~~~~~~~~~~vG~p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~ 525 (695)
|+++.++...+.+...+++|+|+ |+++++|+|.++...... .+.|||+++||++|.|||++|+.|+++|+.||||+
T Consensus 497 Et~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~---~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~ 573 (746)
T PTZ00342 497 ETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDT---LPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFK 573 (746)
T ss_pred cccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCCC---CCceEEEEecCcccccccCChhhhhhhcCcCCccc
Confidence 99877776666667889999998 999999998654332222 24799999999999999999999999998899999
Q ss_pred cccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcC-
Q 005468 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEG- 604 (695)
Q Consensus 526 TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~- 604 (695)
|||+|++|+||+|+|+||+||+||+++|++|+|++||++|.+||.|.+|+|+|++...+++|+|+|+++.+..|+++.+
T Consensus 574 TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~ 653 (746)
T PTZ00342 574 TGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNM 653 (746)
T ss_pred CCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCC
Confidence 9999999999999999999999998899999999999999999999999999987678999999999999999998753
Q ss_pred -----CCcccHHH-----hhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHH
Q 005468 605 -----IQYENLEQ-----LCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYF 674 (695)
Q Consensus 605 -----~~~~~~~~-----~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~ 674 (695)
+...++.+ .|+++++.+.+.+++.+..++.+|++|+++++|+++++.||+ +|++|||.|++|+.+.+.|
T Consensus 654 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~-~~~lTpt~KlkR~~v~~~y 732 (746)
T PTZ00342 654 LESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDT-NNYLTPTFKVKRFYVFKDY 732 (746)
T ss_pred ccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCC-CCccChhhhhhHHHHHHHH
Confidence 43334544 556778899999999999887899999999999999999999 5799999999999999999
Q ss_pred H---HHHHHHHHh
Q 005468 675 A---KAIADMYAE 684 (695)
Q Consensus 675 ~---~~i~~ly~~ 684 (695)
+ ++|++||++
T Consensus 733 ~~~i~~i~~~y~~ 745 (746)
T PTZ00342 733 AFFIDQVKKIYKN 745 (746)
T ss_pred HHHHHHHHHHhcC
Confidence 9 777888864
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-96 Score=834.29 Aligned_cols=629 Identities=41% Similarity=0.707 Sum_probs=543.2
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHc
Q 005468 54 GKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH 133 (695)
Q Consensus 54 ~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~ 133 (695)
.++++||+....+.+.. ..++..|++++|.+.++++|+++|++++...++..++++|+||+|+.+++.++|++|.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~ 96 (660)
T PLN02430 20 SVGPVYRNLLSKKGFPP---IDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRAS 96 (660)
T ss_pred CCCCccccccccccccC---CCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHc
Confidence 47899999876555432 346889999999999999999999987632234445688999999999999999999999
Q ss_pred CCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchh-HHHhcccCCCCceEE
Q 005468 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN-SLLSCLSEVPTVRLI 212 (695)
Q Consensus 134 gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-~~~~~~~~~~~l~~i 212 (695)
|+++||+|+|+++|++||+++++||+++|+++||+++.++++++.+++++++++++|++..... .+.......+.++.+
T Consensus 97 Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~i 176 (660)
T PLN02430 97 GAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAI 176 (660)
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999876433 232222334567888
Q ss_pred EEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc-
Q 005468 213 VVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG- 291 (695)
Q Consensus 213 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~- 291 (695)
+++++............+...++|++++..+........+..++|+++|+|||||||.||||++||+|+++.+......
T Consensus 177 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~ 256 (660)
T PLN02430 177 VSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFM 256 (660)
T ss_pred EEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhc
Confidence 8886533211111111244567899988766543333344578999999999999999999999999999887654321
Q ss_pred ----cccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhc
Q 005468 292 ----TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367 (695)
Q Consensus 292 ----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 367 (695)
..+.++|++++++|++|++++...+.++..|++++++..++..++++|++++||++.++|++|+++++.+...+..
T Consensus 257 ~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~ 336 (660)
T PLN02430 257 EQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQE 336 (660)
T ss_pred cccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhc
Confidence 2467899999999999999998877788999999998889999999999999999999999999999999888888
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCC---CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccc
Q 005468 368 SGGLRERLFNAAYNAKKQAMLSGKN---PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYG 444 (695)
Q Consensus 368 ~~~~~~~~~~~a~~~k~~~~~~~~~---~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG 444 (695)
.+.+++.+|+.++..|...+..+.. ...++|.++|+++++.+|+++|.+++||+++++++.++++...+++++++||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG 416 (660)
T PLN02430 337 LNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYG 416 (660)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecc
Confidence 8889999999999999988876543 2467899999999999999999999999999999988777654578999999
Q ss_pred cccccccccccCCCC-CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCe
Q 005468 445 MTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGW 523 (695)
Q Consensus 445 ~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw 523 (695)
+||+++.++...+.+ ...+++|.|.++++++++|++++++.+.+.+ +.|||+|+|++++.|||++|+.|++.| .+||
T Consensus 417 ~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~-~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw 494 (660)
T PLN02430 417 LTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVM-KDGW 494 (660)
T ss_pred hhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCC-CcceEEecCCCccccccCChHHhhhhh-hccc
Confidence 999987766655443 4579999999999999998777665554432 379999999999999999999999999 6999
Q ss_pred eecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHc
Q 005468 524 FHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603 (695)
Q Consensus 524 ~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~ 603 (695)
|+|||+|++|+||+|+|+||+||+||+++|++|+|++||++|.+||.|.+|+|+|++.++.++|+|+++++.+.+|++.+
T Consensus 495 ~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~ 574 (660)
T PLN02430 495 FHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDN 574 (660)
T ss_pred eeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEcCHHHHHHHHHhC
Confidence 99999999999999999999999999888999999999999999999999999998777899999999999999999998
Q ss_pred CCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHH
Q 005468 604 GIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 683 (695)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~ 683 (695)
++. .+..++|+++++++.+.++|.+.+++.+|++|+++++|++++++||++||++|||+|++|+.+.+.|+++|++||+
T Consensus 575 ~~~-~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 653 (660)
T PLN02430 575 GFT-GSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYR 653 (660)
T ss_pred CCC-CCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHHHHH
Confidence 886 5678899999999999999999987788999999999999999999999999999999999999999999999999
Q ss_pred hccCC
Q 005468 684 ELSRS 688 (695)
Q Consensus 684 ~~~~~ 688 (695)
++.++
T Consensus 654 ~~~~~ 658 (660)
T PLN02430 654 KLAEK 658 (660)
T ss_pred hhhhc
Confidence 87664
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-96 Score=834.04 Aligned_cols=628 Identities=42% Similarity=0.749 Sum_probs=535.6
Q ss_pred CCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHH
Q 005468 52 DTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI 131 (695)
Q Consensus 52 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~ 131 (695)
.++++++||++...+.+.+. .++..|++++|.++++++|+++|++.+...++..++++++||+||.+++.++|++|.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~---~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~ 95 (660)
T PLN02861 19 KPSAGPVYRSIYAKDGLLDL---PADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIR 95 (660)
T ss_pred CCCCCCcccccccccccccC---CCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHH
Confidence 35678899998877666542 357789999999999999999999875322333456788999999999999999999
Q ss_pred HcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCC-Cce
Q 005468 132 YHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP-TVR 210 (695)
Q Consensus 132 ~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~l~ 210 (695)
++|+++||+|+|+++|++||++++|||+++|+++|||++.++.+++.+++++++++++|++......+.......+ .++
T Consensus 96 ~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~ 175 (660)
T PLN02861 96 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLK 175 (660)
T ss_pred HcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999998777666655444443 577
Q ss_pred EEEEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc
Q 005468 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290 (695)
Q Consensus 211 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~ 290 (695)
.++.+++............+....+|.++...+... ....+..++|+++|+|||||||.||||++||+++++.+.....
T Consensus 176 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~ 254 (660)
T PLN02861 176 TIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDH 254 (660)
T ss_pred EEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHh
Confidence 888876532111001111234457788877654321 2223456899999999999999999999999999988766544
Q ss_pred ccc-----cCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHH
Q 005468 291 GTK-----FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365 (695)
Q Consensus 291 ~~~-----~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 365 (695)
.+. +.++|++++++|++|++++...+.+++.|+++++.++++..++++|++++||+++++|++|+.+++.+...+
T Consensus 255 ~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~ 334 (660)
T PLN02861 255 LLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKI 334 (660)
T ss_pred ccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHH
Confidence 332 468899999999999999887777899999999988899999999999999999999999999999998899
Q ss_pred hcccchHHHHHHHHHHHHHHHHhcCCCC---CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-cccc
Q 005468 366 RTSGGLRERLFNAAYNAKKQAMLSGKNP---SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTE 441 (695)
Q Consensus 366 ~~~~~~~~~~~~~a~~~k~~~~~~~~~~---~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~v~~ 441 (695)
...+.+++.+|++++..+...+..+... .+.++.++++++++.+|+++|.+++||+++++++.+++ +.++. .+++
T Consensus 335 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~-~~~~~~~l~~ 413 (660)
T PLN02861 335 SSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFL-RVTSCSVLSQ 413 (660)
T ss_pred hccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHH-HHHcCCCeeE
Confidence 8899999999999999998887665322 35678889999999999999999999999999986644 45564 7999
Q ss_pred ccccccccccccccCCCC-CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCC
Q 005468 442 GYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520 (695)
Q Consensus 442 ~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~ 520 (695)
+||+||+++.++.....+ ...+++|+|+|+++++|+|.+++++.... +++.|||+|+||+++.|||++|+.|+++| .
T Consensus 414 ~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~-~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~ 491 (660)
T PLN02861 414 GYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALS-DVPRGEICLRGNTLFSGYHKRQDLTEEVL-I 491 (660)
T ss_pred ecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCC-CCCceeEEEcCCcccccccCCHHHHHhhh-h
Confidence 999999987665443332 35689999999999999986554432211 23489999999999999999999999999 6
Q ss_pred CCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHHHHHHH
Q 005468 521 DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600 (695)
Q Consensus 521 ~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~ 600 (695)
||||+|||+|++|+||+|+|+||+||+||+++|++|+|++||++|.+||.|.+|+|+|++.++.++|+|+++.+.+..|+
T Consensus 492 dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~ 571 (660)
T PLN02861 492 DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWA 571 (660)
T ss_pred ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHH
Confidence 89999999999999999999999999999878999999999999999999999999999877899999999999999999
Q ss_pred HHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHH
Q 005468 601 ASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIAD 680 (695)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ 680 (695)
..+++. ..+.++|++++.+..+.+++++.+++.+|+.|++++.|++.+++||++||++||++|++|+.+.+.|+++|++
T Consensus 572 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~ 650 (660)
T PLN02861 572 ANNNKT-GDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQ 650 (660)
T ss_pred HHcCCC-CCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHH
Confidence 988764 4678899999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred HHHhccC
Q 005468 681 MYAELSR 687 (695)
Q Consensus 681 ly~~~~~ 687 (695)
||++...
T Consensus 651 lY~~~~~ 657 (660)
T PLN02861 651 LYSEAKG 657 (660)
T ss_pred HHHhhhh
Confidence 9998654
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-95 Score=780.08 Aligned_cols=584 Identities=38% Similarity=0.594 Sum_probs=502.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...++..++.+.++.+|+.+++... ..+.++.+||+|+.+++.++|++|++.|+..||+|+|++.|+++|+++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~ 88 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADL 88 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4578999999999999998898876 35678999999999999999999999999779999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-hHHHhcccCCCCceEEEEECCCCCCCC-----CCCcCCC
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-NSLLSCLSEVPTVRLIVVIGGIDDQIP-----SLPITTG 230 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-~~~~~~~~~~~~l~~ii~~~~~~~~~~-----~~~~~~~ 230 (695)
||+.+|++.||++++.+++++.|+|++++++++|++.... +.+......++.+..++...+...... .+.....
T Consensus 89 a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (613)
T COG1022 89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPD 168 (613)
T ss_pred HHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccc
Confidence 9999999999999999999999999999999999998544 444444443332221221111000000 0000001
Q ss_pred ceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccc-cCCCcEEEEeCChhhH
Q 005468 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-FYPSDVYISYLPLAHI 309 (695)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~h~ 309 (695)
.....+ .+.... ......+..+||+|+|+|||||||.||||++||+|+++++........ +.++|+++++||++|+
T Consensus 169 ~~~~~~-~~~~~~--~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi 245 (613)
T COG1022 169 EGISLF-LIDSAG--LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHI 245 (613)
T ss_pred ccchhh-hhcccc--cccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHH
Confidence 111111 111111 111225678999999999999999999999999999999999998886 8999999999999999
Q ss_pred HHHHHHHHHHHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh-
Q 005468 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML- 388 (695)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~- 388 (695)
+++++.......|+...++..++..+++++++++||++++||++|+.+.+.+.+++.+++..++.+|++++..+.....
T Consensus 246 ~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~ 325 (613)
T COG1022 246 FERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISR 325 (613)
T ss_pred HHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 9999865444455555556689999999999999999999999999999999999999999999999999987654332
Q ss_pred ---cCCCC--CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCC
Q 005468 389 ---SGKNP--SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463 (695)
Q Consensus 389 ---~~~~~--~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (695)
.+..+ ....|+|+|+|+++.+|+++|++++||+++++++..+++.. |+++.++||||||+++++.+++.+...+
T Consensus 326 ~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~~~~~g 404 (613)
T COG1022 326 ALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPDRFVLG 404 (613)
T ss_pred hhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccccCcccC
Confidence 22222 23579999999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred CcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEec
Q 005468 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (695)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (695)
++|.|+|++|++|+| .|||+||||+||+|||++|++|+++|++||||+|||+|.+|++|+|+|+||
T Consensus 405 tvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gR 470 (613)
T COG1022 405 TVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGR 470 (613)
T ss_pred CcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeec
Confidence 999999999999999 699999999999999999999999999999999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCC-cccHHHhhCCHHHHHH
Q 005468 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQ-YENLEQLCNDPRARAA 622 (695)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 622 (695)
+||+||+++|+||+|+.||+.+.++|.|.+++|+| +++..++|+|+|+.+.+.+|+...+.. ..+..+++.++++.+.
T Consensus 471 kK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~ 549 (613)
T COG1022 471 KKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKL 549 (613)
T ss_pred ccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHH
Confidence 99999999999999999999999999999999999 668999999999999999999987743 3678899999999999
Q ss_pred HHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHHhcc
Q 005468 623 VLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAELS 686 (695)
Q Consensus 623 i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~~~~ 686 (695)
+..++....+ .+..++.++++.+.++.++.++|.+|++.|++|+.+.+.|+++|+.+|.+-.
T Consensus 550 ~~~~i~~~~~--~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~~~~ 611 (613)
T COG1022 550 ILPRVNKGNK--RLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSRQS 611 (613)
T ss_pred HHHHHHHHhh--cccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhhccc
Confidence 9999998875 5589999999999999999999999999999999999999999999998743
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-92 Score=810.45 Aligned_cols=632 Identities=33% Similarity=0.549 Sum_probs=537.3
Q ss_pred CCceEEcCCcCCCCCCccccCCCCCcccccc-CCCCCCCCCHHHHHHHHHHhcCCCccEEEEee----------ecCc--
Q 005468 41 QGYSVVLPEKLDTGKWNVYRSSRSPLKLVSR-FPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVR----------VDGT-- 107 (695)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~----------~d~~-- 107 (695)
..+++++++..++.++++||+....+..... .....+..|++++|.++++++||++|++++.. .++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~ 109 (700)
T PTZ00216 30 GPQNVPVPGTETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKER 109 (700)
T ss_pred CCcceecCCCCCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccc
Confidence 4578999988888889999987644321111 11234678999999999999999999998621 0121
Q ss_pred ------cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHH
Q 005468 108 ------VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV 181 (695)
Q Consensus 108 ------~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il 181 (695)
.++++++||+||.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||+++.++++++.+++
T Consensus 110 ~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il 189 (700)
T PTZ00216 110 TMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYAL 189 (700)
T ss_pred cccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhh
Confidence 13578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccEEEecccchhHHHhcccC--CCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcccc--CCC-CCCCCCCC
Q 005468 182 NHASVQAVFCVPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRS--NLQ-PFSPPKPD 256 (695)
Q Consensus 182 ~~~~~~~vi~~~~~~~~~~~~~~~--~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~ 256 (695)
++++++++|++......+...... .+.. .++++++.... ....+...++|++++..+.. ... ...+..++
T Consensus 190 ~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (700)
T PTZ00216 190 RETECKAIVCNGKNVPNLLRLMKSGGMPNT-TIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENND 264 (700)
T ss_pred hccCccEEEECHHHHHHHHHhhhhccCCce-EEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcc
Confidence 999999999987766555443322 2333 46666543211 11234567889998876521 111 12345689
Q ss_pred CcEEEEeccCCCCCCceEEechHHHHHHHHhhcccc-----ccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCC
Q 005468 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT-----KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGD 331 (695)
Q Consensus 257 ~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~ 331 (695)
|+++|+|||||||.||||++||+|+++.+......+ .+.++|++++++|++|++++......++.|+++++ .+
T Consensus 265 d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~--~~ 342 (700)
T PTZ00216 265 DLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GS 342 (700)
T ss_pred cEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEE--CC
Confidence 999999999999999999999999998877655432 24678999999999999998876667888888776 45
Q ss_pred hhhHHH-------HHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 005468 332 NMKLMD-------DMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404 (695)
Q Consensus 332 ~~~l~~-------~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~ 404 (695)
+..+.+ ++++++||++.++|++|+++.+.+.......+.+++.+|+.++..++..+..+. ..++++.++|++
T Consensus 343 ~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~v~~~ 421 (700)
T PTZ00216 343 PRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK-DTPYWNEKVFSA 421 (700)
T ss_pred HHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC-CCchHHHHHHHH
Confidence 666655 789999999999999999999998888888889999999999999988776654 346889999999
Q ss_pred HHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCC
Q 005468 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484 (695)
Q Consensus 405 ~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~ 484 (695)
++..+|+++|.+++||+++++++.++++..++ +++++||+||+++.++.....+...+++|+|+++++++|+|.++...
T Consensus 422 ~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~ 500 (700)
T PTZ00216 422 PRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKH 500 (700)
T ss_pred HHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhcc
Confidence 99999999999999999999999999988878 99999999999877766666666789999999999999999654222
Q ss_pred CCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHH
Q 005468 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564 (695)
Q Consensus 485 ~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~ 564 (695)
.+.+.+.|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||+||+++|++|+|++||++
T Consensus 501 --~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~ 578 (700)
T PTZ00216 501 --TDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEAL 578 (700)
T ss_pred --CCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHH
Confidence 233345899999999999999999999999999999999999999999999999999999999669999999999999
Q ss_pred HhcCcCcce--EEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCccee
Q 005468 565 YAKCKFVGQ--CFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFV 642 (695)
Q Consensus 565 l~~~p~V~~--~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p 642 (695)
|.+||.|.+ ++|++.+++.+++|+|+++.+.+..|++++++. .++.++|+++++++.+.++|.+.+++.+|.+|++|
T Consensus 579 l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i 657 (700)
T PTZ00216 579 YGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIE-GEYPAILKDPEFQKKATESLQETARAAGRKSFEIV 657 (700)
T ss_pred HhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCC-CCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeE
Confidence 999999997 567777778999999999999999999998887 67889999999999999999999988899999999
Q ss_pred eEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHHh
Q 005468 643 KAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAE 684 (695)
Q Consensus 643 ~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~~ 684 (695)
++|+++++.||++||++||++|++|+++.++|+++|++||++
T Consensus 658 ~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~ 699 (700)
T PTZ00216 658 RHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFAD 699 (700)
T ss_pred eEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999975
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-80 Score=665.98 Aligned_cols=497 Identities=30% Similarity=0.421 Sum_probs=416.6
Q ss_pred HHhcCCC-ccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEccCChhHHHHHHHHHhcCCeE
Q 005468 89 VDTFRDY-KYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG--ISKGSCIGLYFVNRPEWLIVDHACSAYSFIS 165 (695)
Q Consensus 89 a~~~pd~-~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~g--v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~ 165 (695)
+..++++ +++++. +.. .+.+||+|+.+++.++|++|.++| +++||+|+|++||++++.++++||+.+|+++
T Consensus 26 ~~~~~~~~~~~i~~---~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~ 99 (537)
T KOG1176|consen 26 AFVYLDRNTSLVYQ---DSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVL 99 (537)
T ss_pred ccccccCcceEEEe---cCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccc
Confidence 3344444 777665 211 246999999999999999999876 8999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee-HHHHHhccc
Q 005468 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT-YSNLLSQGR 244 (695)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 244 (695)
.|++|.+.+.++.+.+++++++++|++....+++.+....+. ..++++......... .......+ +..+...+.
T Consensus 100 ~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 174 (537)
T KOG1176|consen 100 NPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA--LKIIVLTGDEGVISI---SDLVEDLDAFEDLMPEGL 174 (537)
T ss_pred cccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC--CceEEEecccCcccc---ccccccccchhhccccCC
Confidence 999999999999999999999999999999988877765544 334444432110000 00011112 444433332
Q ss_pred cCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH-HHHcCc
Q 005468 245 SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGV 323 (695)
Q Consensus 245 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~-~l~~G~ 323 (695)
... ..+.+.+|++.|+|||||||.||||++||++++.+.........+...|+.++.+|++|.+|+...+. .+..|+
T Consensus 175 ~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~ 252 (537)
T KOG1176|consen 175 PDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGT 252 (537)
T ss_pred Ccc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCc
Confidence 221 45567799999999999999999999999999999877666667777999999999999999999887 455666
Q ss_pred EEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 005468 324 AVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402 (695)
Q Consensus 324 ~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~ 402 (695)
++++.+ +++..+++.|++|++|+++++|.++..|.+... .
T Consensus 253 ~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~----------------------------------~----- 293 (537)
T KOG1176|consen 253 TIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPI----------------------------------V----- 293 (537)
T ss_pred eEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCc----------------------------------c-----
Confidence 666666 699999999999999999999999999876310 0
Q ss_pred HHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCCCC-CCCCCcCCCccCcEEEEeecC
Q 005468 403 NKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVP 480 (695)
Q Consensus 403 ~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~ 480 (695)
.....+++|.+.+||+++++++.+++++.++ ..+.++|||||+++.++.+...+ ..++++|.+++++++++.+ +
T Consensus 294 ---~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e 369 (537)
T KOG1176|consen 294 ---KKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-E 369 (537)
T ss_pred ---CcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC-C
Confidence 0011169999999999999999999999998 88999999999998887776666 4899999999988888887 7
Q ss_pred CCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHH
Q 005468 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEK 560 (695)
Q Consensus 481 ~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~ 560 (695)
.+..++.++ .||||+||+++++|||+||++|++.|+++|||||||+|++|+||+|+|+||.||+||. +|++|+|.|
T Consensus 370 ~g~~l~~~~---~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-~G~qv~P~E 445 (537)
T KOG1176|consen 370 TGVSLGPNQ---TGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKY-GGEQVSPAE 445 (537)
T ss_pred CCCCCCCCC---ceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheee-CCEEeCHHH
Confidence 777777777 8999999999999999999999999988899999999999999999999999999996 999999999
Q ss_pred HHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCC
Q 005468 561 IENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLR 637 (695)
Q Consensus 561 IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~ 637 (695)
||++|..||.|.||+|+|.++ ++.++|+||..++. .+ ..++|.++++ ++|+
T Consensus 446 iE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~--------~l-----------------te~di~~~v~-k~l~ 499 (537)
T KOG1176|consen 446 IEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS--------TL-----------------TEKDIIEYVR-KKLP 499 (537)
T ss_pred HHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC--------cC-----------------CHHHHHHHHH-hhCC
Confidence 999999999999999999765 68999999998732 12 2677888886 8999
Q ss_pred CcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 638 GFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 638 ~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.|++|+.|+|++++| +|++|||+|+.|++.|.+.
T Consensus 500 ~y~~~~~V~Fvd~lP------Ks~~GKi~R~~lr~~~~~~ 533 (537)
T KOG1176|consen 500 AYKLPGGVVFVDELP------KTPNGKILRRKLRDIAKKL 533 (537)
T ss_pred hhhccCeEEEeccCC------CCCcchHHHHHHHHHHHhc
Confidence 999999999999999 9999999999999999863
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-80 Score=617.05 Aligned_cols=509 Identities=22% Similarity=0.326 Sum_probs=440.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.+.++..+++.||+.|+++.. .+ .++||+|+.+.++++|++|.++|+++||+|+|+.||+.+|+...|
T Consensus 48 ~~~Tigq~l~~~t~~v~dkea~Vf~~--eg-----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~l 120 (596)
T KOG1177|consen 48 DSETIGQLLETTTERVPDKEAAVFDH--EG-----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQL 120 (596)
T ss_pred ccccHHHHHHHHhhccCcceEEEEee--cc-----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHH
Confidence 45799999999999999999998861 22 348999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-----hHHHhccc-------------CCCCceEEEEECCC
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLS-------------EVPTVRLIVVIGGI 218 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~-------------~~~~l~~ii~~~~~ 218 (695)
||.++|.+.|++||.+..+++++.|++.+++++|+..... +.+.++.. .+|.++++|..+++
T Consensus 121 A~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed 200 (596)
T KOG1177|consen 121 ACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED 200 (596)
T ss_pred HHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC
Confidence 9999999999999999999999999999999999986432 22333322 35678888887743
Q ss_pred CCCCCCCCcCCCceEeeHHHHHhccccCCC-----CCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccc
Q 005468 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQ-----PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293 (695)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~ 293 (695)
.+ ....+.+++++..+..... -.....|||++.|.|||||||.|||+.+||.|++++.......++
T Consensus 201 ~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g 271 (596)
T KOG1177|consen 201 HP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAG 271 (596)
T ss_pred Cc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhC
Confidence 21 1234678888776654211 123457899999999999999999999999999999998888899
Q ss_pred cCCCcEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccc
Q 005468 294 FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370 (695)
Q Consensus 294 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 370 (695)
+...+++++..||+|.+|... .+.++..|++++|+. +++.+.++.|.++|+|.++++|++|..+++.....
T Consensus 272 ~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~------ 345 (596)
T KOG1177|consen 272 YNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQ------ 345 (596)
T ss_pred cCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhc------
Confidence 999999999999999999665 778999999999976 89999999999999999999999999987532111
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-cccccccccccc
Q 005468 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETS 449 (695)
Q Consensus 371 ~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~ 449 (695)
+...+++|.++.||+++|+++++.+...+.. .+..+||+||++
T Consensus 346 ------------------------------------~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts 389 (596)
T KOG1177|consen 346 ------------------------------------QVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETS 389 (596)
T ss_pred ------------------------------------cCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccC
Confidence 1111589999999999999999999886654 377899999999
Q ss_pred ccccccCCCC---CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeec
Q 005468 450 CLISQLDEGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526 (695)
Q Consensus 450 ~~~~~~~~~~---~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~T 526 (695)
+..+...++| ....++|..+++.|.+|+| .++...+.+. .||||+||++++.|||++++.|++..+.|.||+|
T Consensus 390 ~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~---~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~T 465 (596)
T KOG1177|consen 390 PVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGT---KGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDT 465 (596)
T ss_pred cceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCC---CceEEEEechhheeecCCcccchhhcccccceec
Confidence 8888776666 4567899999999999999 7777777777 6999999999999999999999999999999999
Q ss_pred ccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHc
Q 005468 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASE 603 (695)
Q Consensus 527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~ 603 (695)
||+|.+|++|+++|+||.||+|+ ++||+|+|.|||+.|.+||.|.++.|+|.++ ++.++|.|-+.+....
T Consensus 466 GDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~------ 538 (596)
T KOG1177|consen 466 GDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEG------ 538 (596)
T ss_pred CceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccc------
Confidence 99999999999999999999999 6999999999999999999999999999875 4688999998875311
Q ss_pred CCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHH
Q 005468 604 GIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAI 678 (695)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i 678 (695)
+...++|+++|| .+|..|++|+.|++++++| +|-+|||+|.+++++.+.++
T Consensus 539 -----------------~~t~E~lKa~Ck-~klaHFKiPky~vf~~~FP------lT~tGKIqKFeir~~~k~~l 589 (596)
T KOG1177|consen 539 -----------------KTTAETLKAMCK-GKLAHFKIPKYFVFVDEFP------LTTTGKIQKFEIREMSKGHL 589 (596)
T ss_pred -----------------cccHHHHHHHHh-cccccccCCcEEEEeccCc------ccccccchhHHHHHHHHhhc
Confidence 134789999998 7799999999999999998 99999999999999999765
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-77 Score=701.57 Aligned_cols=574 Identities=20% Similarity=0.352 Sum_probs=477.8
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcc
Q 005468 67 KLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFV 146 (695)
Q Consensus 67 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~ 146 (695)
.+...|++.+...|+.++|.+.++++|+++|++.+ . ..++++|+||+|+.+++.++|++|.++|+++||+|+|+++
T Consensus 415 ~~~~~~~~~~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~ 490 (1452)
T PTZ00297 415 NLPREYNPLAGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCE 490 (1452)
T ss_pred hhhhcCCCcccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence 45566888899999999999999999999999753 1 1245688999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCC-CCC
Q 005468 147 NRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQI-PSL 225 (695)
Q Consensus 147 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~-~~~ 225 (695)
|++||+++++||+++|+++||+++. .+++.+++++++++++|++.+....+.+... +.++.||++++..+.. ...
T Consensus 491 N~~Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~ 566 (1452)
T PTZ00297 491 ASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFYDEDDHAV 566 (1452)
T ss_pred CCHHHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCcccccccc
Confidence 9999999999999999999999864 6799999999999999999888777766543 3689999986421110 011
Q ss_pred CcCCCceEeeHHHHHhccccCCCC-CCCCCCCCcEEEEe---ccCCCCCCceEEechHHHHHHHHhhcccc---ccCCCc
Q 005468 226 PITTGVQILTYSNLLSQGRSNLQP-FSPPKPDDVATICY---TSGTTGTPKGAVLSHGNLIASVAGATLGT---KFYPSD 298 (695)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~---TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d 298 (695)
....++.+++|+++++.+.....+ ....+++|++.|+| ||||||.||||++||+|+++++....... ...++|
T Consensus 567 ~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D 646 (1452)
T PTZ00297 567 ARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKH 646 (1452)
T ss_pred cccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCC
Confidence 111244578899999877432221 23347889999996 99999999999999999999988765422 356789
Q ss_pred EEEEeCChhhHHHHHHHHHHHHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHH
Q 005468 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (695)
Q Consensus 299 ~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (695)
++++++||+|++++...+.+++.|+++++ +++..++++|++++||++++||++|+++.+.+..+....+.+++++|++
T Consensus 647 ~~Ls~LPLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~ 724 (1452)
T PTZ00297 647 LMVHFTPFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFER 724 (1452)
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999998877888999999975 5899999999999999999999999999999998888888999999999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCC--CCcHHHHHHHHHHhCCccccccccccccccccccC
Q 005468 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS--PLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD 456 (695)
Q Consensus 379 a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~--~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~ 456 (695)
|+..|...+..+.....++|+++|+++|+.+|+++|.+++||+ +++..+.. +++++.+||+||+. +.+.
T Consensus 725 A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~ 795 (1452)
T PTZ00297 725 AFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPS 795 (1452)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecC
Confidence 9999887777666667899999999999999999999999984 55544333 57789999999953 3344
Q ss_pred CCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCC
Q 005468 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536 (695)
Q Consensus 457 ~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG 536 (695)
+++... .|.|+|++++||.++++..+. + +.|||+++ |++||+.|++.+ +||+ +||
T Consensus 796 ~~~~~~--~G~PlpgvEvKI~~~~E~~~~--~---~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~dG 850 (1452)
T PTZ00297 796 EGVFCV--DGTPAPSLQVDLEPFDEPSDG--A---GIGQLVLA-------KKGEPRRTLPIA--AQWK---------RDR 850 (1452)
T ss_pred CCCccc--CCeecCceEEEEcccccccCC--C---CCCeEEEE-------ECCChHHHHHhh--CcCc---------cCC
Confidence 544433 399999999999987665432 1 37999996 458999999854 5775 699
Q ss_pred cEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHHHH-HHHHHcCCCcc-------
Q 005468 537 RLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALK-AWAASEGIQYE------- 608 (695)
Q Consensus 537 ~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~-~~~~~~~~~~~------- 608 (695)
+|+|+||+||+||+++|+||+|+.||++|.++|.|.+++|+|++ +..++|+|+|+++.+. +|+.++++...
T Consensus 851 ~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~-~k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~ 929 (1452)
T PTZ00297 851 TLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADP-SRPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQL 929 (1452)
T ss_pred eEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecC-CCceEEEEEeCHHHHHHHHHHHcCCCccccccccC
Confidence 99999999999999999999999999999999999999999988 4559999999999999 99999987531
Q ss_pred cHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHHhccC
Q 005468 609 NLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAELSR 687 (695)
Q Consensus 609 ~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~~~~~ 687 (695)
...+++++ ..+.+.+++....+.+++.++++++.|+++++.||+|||++|||+|++|+.+.++|+++|++||++.++
T Consensus 930 ~~~el~~~--~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~~~~~ 1006 (1452)
T PTZ00297 930 GWTELVAY--ASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDVET 1006 (1452)
T ss_pred CHHHHHHh--HHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhccccc
Confidence 34455532 233556666555555678999999999999999999999999999999999999999999999997655
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=658.86 Aligned_cols=506 Identities=29% Similarity=0.421 Sum_probs=423.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...++.++|.++++++|+++|+.+. +.. ..+||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus 9 ~~~~~~~~l~~~a~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~ 81 (534)
T COG0318 9 AELTLASLLERAARRNPDRPALIFL---GRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFL 81 (534)
T ss_pred ccccHHHHHHHHHHhCCCceEEEEc---CCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4579999999999999999999875 322 159999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|++++|+++.+..+++.++++++++++++++....+.+.......+....+.......... ..++
T Consensus 82 a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 151 (534)
T COG0318 82 AALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRL----------PITL 151 (534)
T ss_pred HHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccc----------cccH
Confidence 999999999999999999999999999999999999885444444443333232222222111000 0245
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccc--cCCCcEEEEeCChhhHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK--FYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~pl~h~~~~~~ 314 (695)
+++..............+++|+++|+|||||||.||||++||+|++.+.......+. +.+.|++++++|++|++|+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~ 231 (534)
T COG0318 152 EALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIV 231 (534)
T ss_pred HHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHH
Confidence 555333222222222367899999999999999999999999999999888877777 899999999999999999998
Q ss_pred HHH-HHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcC
Q 005468 315 QVM-TVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (695)
Q Consensus 315 ~~~-~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (695)
.+. .++.|+++++.+ +++..++..+.++++|++.++|+++..++.......
T Consensus 232 ~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~------------------------- 286 (534)
T COG0318 232 GLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD------------------------- 286 (534)
T ss_pred HHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-------------------------
Confidence 666 589999999887 799999999999999999999999999876311100
Q ss_pred CCCCchhHHHHHHHHHhhcCC-cEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCCCC--CCCCCcC
Q 005468 391 KNPSPMWDRLVFNKIKDKLGG-RVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGD--NLSGHVG 466 (695)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~-~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG 466 (695)
.... ++|.+++||+++++++++++++.|+ ..++++||+||+++.++.+...+ ...+++|
T Consensus 287 -----------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 349 (534)
T COG0318 287 -----------------DDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVG 349 (534)
T ss_pred -----------------cccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCccc
Confidence 0002 4999999999999999999999998 46999999999998777766665 4678889
Q ss_pred CCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCC
Q 005468 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (695)
Q Consensus 467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (695)
.|+|+++++|+|.++....+ |+ .|||+|+||+++.|||++|+.|.+.|+.+|||+|||+|++|+||+++|+||.||
T Consensus 350 ~~~pg~~v~Ivd~~~~~~~p-g~---vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd 425 (534)
T COG0318 350 RPLPGVEVRIVDPDGGEVLP-GE---VGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKD 425 (534)
T ss_pred ccCCCcEEEEEeCCCCccCC-CC---ceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccce
Confidence 99999999999966554444 44 899999999999999999999999996679999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005468 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAV 623 (695)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (695)
+|+. +|++|+|.|||+++.+||.|.+|+|+|.++ ++.++|+|+++++.. . ...
T Consensus 426 ~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~--------~---------------~~~ 481 (534)
T COG0318 426 LIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD--------A---------------ELT 481 (534)
T ss_pred EEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC--------C---------------CCC
Confidence 9995 999999999999999999999999999764 689999999987420 0 012
Q ss_pred HHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 624 LADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 624 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.++|.++++ .+++.|++|+.|++++++| +|++||++|+.|++.+.+
T Consensus 482 ~~~i~~~~~-~~l~~~~~P~~v~~v~~lP------~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 482 AEELRAFLR-KRLALYKVPRIVVFVDELP------RTASGKIDRRALREEYRA 527 (534)
T ss_pred HHHHHHHHH-hhhhcccCCeEEEEeCCCC------CCCchhhhHHHHHHHHHh
Confidence 566677775 5899999999999999999 999999999999999987
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-75 Score=663.78 Aligned_cols=544 Identities=22% Similarity=0.315 Sum_probs=438.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHH
Q 005468 74 DHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI 153 (695)
Q Consensus 74 ~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~ 153 (695)
......|+.++|.++++++|+++|+.+. + ..+.++++||+||.++++++|++|.+.|+++||+|+|+++|+++|++
T Consensus 34 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~ 109 (614)
T PRK08180 34 LGDYPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHAL 109 (614)
T ss_pred CCCcCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHH
Confidence 3345679999999999999999999764 2 12346789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEeccCCCC-----HHHHHHHHHhccccEEEecccc-h-hHHHhcccCCCCceEEEEECCCCCCCCCCC
Q 005468 154 VDHACSAYSFISVPLYDTLG-----PDAVKYIVNHASVQAVFCVPQT-L-NSLLSCLSEVPTVRLIVVIGGIDDQIPSLP 226 (695)
Q Consensus 154 ~~lA~~~~G~v~vpl~~~~~-----~~~l~~il~~~~~~~vi~~~~~-~-~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~ 226 (695)
++|||+++|+++||+++.++ .+++.+++++++++++|++... . ..+.... . ...+ ++..+....
T Consensus 110 ~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~-~~~~-~i~~~~~~~------ 180 (614)
T PRK08180 110 LALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVV-P-ADVE-VVAVRGAVP------ 180 (614)
T ss_pred HHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhc-c-CCce-EEEecCCCC------
Confidence 99999999999999999998 7999999999999999998542 1 2222111 1 1222 333322110
Q ss_pred cCCCceEeeHHHHHhccccCC--CCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccC--CCcEEEE
Q 005468 227 ITTGVQILTYSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY--PSDVYIS 302 (695)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l~ 302 (695)
.....+|.++........ .......++|+++|+|||||||.||||++||+++.+.+......+.+. .++++++
T Consensus 181 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~ 257 (614)
T PRK08180 181 ---GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVD 257 (614)
T ss_pred ---CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEE
Confidence 001245666654321110 111234679999999999999999999999999998887766555553 5689999
Q ss_pred eCChhhHHHHHH-HHHHHHcCcEEeEec--CC---hhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHH
Q 005468 303 YLPLAHIYERAN-QVMTVYSGVAVGFYQ--GD---NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376 (695)
Q Consensus 303 ~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~---~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 376 (695)
++|++|.+++.. .+.+++.|+++++.+ ++ ...+++.++++++|+++++|++|..|++.+....
T Consensus 258 ~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~----------- 326 (614)
T PRK08180 258 WLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDA----------- 326 (614)
T ss_pred ecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhch-----------
Confidence 999999999865 556899999999865 23 3567889999999999999999999877432110
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH----hC--Cccccccccccccc
Q 005468 377 NAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG--GRVTEGYGMTETSC 450 (695)
Q Consensus 377 ~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~----~g--~~v~~~YG~TE~~~ 450 (695)
.....+++++|.+++||+++++++.+++.+. +| ++++++||+||+++
T Consensus 327 ---------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~ 379 (614)
T PRK08180 327 ---------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAP 379 (614)
T ss_pred ---------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCC
Confidence 0111123689999999999999999999875 34 67999999999987
Q ss_pred cccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEE
Q 005468 451 LISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530 (695)
Q Consensus 451 ~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg 530 (695)
+++.........+++|+|+||++++++|. +. .|||+|+|++++.|||++|+.|.+.|+.+|||+|||+|
T Consensus 380 ~~~~~~~~~~~~~svG~p~pg~~v~i~d~--------~~---~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg 448 (614)
T PRK08180 380 SATFTTGPLSRAGNIGLPAPGCEVKLVPV--------GG---KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAV 448 (614)
T ss_pred ceEecccccCCCCcccCccCCcEEEEecC--------CC---CcEEEEecCccchhhcCChhHhHhhcccCCceeccceE
Confidence 76655444566789999999999999983 22 69999999999999999999999999889999999999
Q ss_pred EE----ecCCcEEEEecCCCeeecCCeeeec--hHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcC
Q 005468 531 MW----IPGGRLKIIDRKKNIFKLAQGEYIA--AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEG 604 (695)
Q Consensus 531 ~~----~~dG~l~i~GR~~d~ikl~~G~~v~--p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~ 604 (695)
++ |++|+|+|+||+||+||+++|++|+ |.|+|.++.+||.|.+|+|+|.+ ...+.|+|+++++....|+...
T Consensus 449 ~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~-~~~~~a~V~~~~~~~~~~~~~~- 526 (614)
T PRK08180 449 RFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHD-RDEIGLLVFPNLDACRRLAGLL- 526 (614)
T ss_pred EecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCC-CCceEEEEEcCHHHHHHHHhhc-
Confidence 99 4689999999999999988999776 78899999999999999999987 4578899999998777776554
Q ss_pred CCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHHh
Q 005468 605 IQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAE 684 (695)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~~ 684 (695)
...+..+.++.+++++.+.+.|.++.+ .....+++|++|.+++++|+..+|.+|++||++|+++.+.|+++|++||++
T Consensus 527 -~~~~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~~ 604 (614)
T PRK08180 527 -ADASLAEVLAHPAVRAAFRERLARLNA-QATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYAD 604 (614)
T ss_pred -ccCCHHHHhcCHHHHHHHHHHHHHHHh-hccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHhCC
Confidence 112344556778899999999888865 445567799999999999999999999999999999999999999999986
Q ss_pred cc
Q 005468 685 LS 686 (695)
Q Consensus 685 ~~ 686 (695)
..
T Consensus 605 ~~ 606 (614)
T PRK08180 605 EP 606 (614)
T ss_pred CC
Confidence 53
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-75 Score=663.22 Aligned_cols=562 Identities=21% Similarity=0.301 Sum_probs=446.9
Q ss_pred CccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCC
Q 005468 56 WNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGI 135 (695)
Q Consensus 56 ~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv 135 (695)
+..+|....+.-....+++.+...|+.++|+++++++||++|+.+. +...+.++.+||+||.++++++|++|.+.|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv 102 (624)
T PRK12582 26 ISVERRADGSIVIKSRHPLGPYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGL 102 (624)
T ss_pred eEEEEcCCceEEEecCCCCCCcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCC
Confidence 4456665544333344666677889999999999999999999865 3223446789999999999999999999999
Q ss_pred CCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCH-----HHHHHHHHhccccEEEecccc-hhHHHhcccCCCCc
Q 005468 136 SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP-----DAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTV 209 (695)
Q Consensus 136 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~-----~~l~~il~~~~~~~vi~~~~~-~~~~~~~~~~~~~l 209 (695)
++||+|+|+++|+++|+++++||+++|++++|+++.++. +++.+++++++++++|++... .......... ..+
T Consensus 103 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~ 181 (624)
T PRK12582 103 DPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDV 181 (624)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCc
Confidence 999999999999999999999999999999999999875 899999999999999998642 2222221111 123
Q ss_pred eEEEEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCC--CCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHh
Q 005468 210 RLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ--PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287 (695)
Q Consensus 210 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~ 287 (695)
+ ++.++.... ......+.++......... ......++++++|+|||||||.||||++||+++.+.+..
T Consensus 182 ~-~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~ 251 (624)
T PRK12582 182 T-VVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAM 251 (624)
T ss_pred e-EEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHH
Confidence 3 333332110 1112456665543221100 112346789999999999999999999999999887766
Q ss_pred hccccccCC---CcEEEEeCChhhHHHHHHH-HHHHHcCcEEeEec--CC---hhhHHHHHHhcCCeEEeechHHHHHHH
Q 005468 288 ATLGTKFYP---SDVYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ--GD---NMKLMDDMAALRPTVFCSVPRLYNRIY 358 (695)
Q Consensus 288 ~~~~~~~~~---~d~~l~~~pl~h~~~~~~~-~~~l~~G~~~~~~~--~~---~~~l~~~i~~~~~t~~~~~P~~~~~l~ 358 (695)
......... .+++++++|++|.+++... +.+++.|+++++.+ ++ ...+++.++++++|+++++|+++..|+
T Consensus 252 ~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~ 331 (624)
T PRK12582 252 QEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLA 331 (624)
T ss_pred HHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHH
Confidence 544434333 5899999999999998764 46789999998865 22 345677889999999999999999887
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh---
Q 005468 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--- 435 (695)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--- 435 (695)
+.+.... ..+....++||.+++||+++++++.+++.+.+
T Consensus 332 ~~~~~~~--------------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~ 373 (624)
T PRK12582 332 EAMEKDD--------------------------------------ALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRT 373 (624)
T ss_pred HHHhhCH--------------------------------------HHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhh
Confidence 6432110 00111125899999999999999999998863
Q ss_pred -C--CccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChh
Q 005468 436 -G--GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512 (695)
Q Consensus 436 -g--~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~ 512 (695)
| ++++++||+||++.+++.........+++|+|+||+++++++ .|+ .|||+|+|++++.|||++|+
T Consensus 374 ~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~--------~G~---~GEl~vrg~~v~~GY~~~p~ 442 (624)
T PRK12582 374 TGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP--------VGD---KYEVRVKGPNVTPGYHKDPE 442 (624)
T ss_pred cCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc--------CCC---ceEEEEECCcccccccCCcc
Confidence 3 679999999999876654444445678999999999999975 233 79999999999999999999
Q ss_pred hhhcccCCCCeeecccEEEE-e---cCCcEEEEecCCCeeecCCeeeechHHHH--HHHhcCcCcceEEEEeeCCCCeEE
Q 005468 513 QTKEVIDEDGWFHTGDIGMW-I---PGGRLKIIDRKKNIFKLAQGEYIAAEKIE--NVYAKCKFVGQCFVYGDSFNSALV 586 (695)
Q Consensus 513 ~t~~~~~~~gw~~TGDlg~~-~---~dG~l~i~GR~~d~ikl~~G~~v~p~~IE--~~l~~~p~V~~~~V~g~~~~~~~v 586 (695)
.|.+.|+.+|||+|||+|++ | ++|+|+|+||+||+||+++|++|+|.+|| .++.+||.|.+|+|+|.+ +..+.
T Consensus 443 ~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~-~~~~g 521 (624)
T PRK12582 443 LTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQD-RAFIG 521 (624)
T ss_pred chhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCC-CCcEE
Confidence 99999988999999999998 4 56999999999999998899999998885 688999999999999986 77889
Q ss_pred EEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcc-eeeEEEEeecCCCCCCCccCccccC
Q 005468 587 AIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFE-FVKAVTLVLEPFTVENGLLTPTFKI 665 (695)
Q Consensus 587 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~-~p~~i~~~~~~p~~~~~~~t~~gKi 665 (695)
++|+|+......|....+. ...+.++++++.+.+.+.|.++. ..++.+. +|+++++++++|+.++|.+|++||+
T Consensus 522 ~lv~p~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 596 (624)
T PRK12582 522 LLAWPNPAACRQLAGDPDA---APEDVVKHPAVLAILREGLSAHN--AEAGGSSSRIARALLMTEPPSIDAGEITDKGYI 596 (624)
T ss_pred EEEecCHHHHHHHHhcCCC---CHHHHhcCHHHHHHHHHHHHHHH--hhcCCChhheEEEEEeCCCCCccCCcCCccccc
Confidence 9999999887767655432 23456778899999999988886 4788999 9999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcc
Q 005468 666 KRPQAKQYFAKAIADMYAELS 686 (695)
Q Consensus 666 ~R~~l~~~~~~~i~~ly~~~~ 686 (695)
+|+.+.+.|+++|++||++..
T Consensus 597 ~R~~~~~~y~~~i~~ly~~~~ 617 (624)
T PRK12582 597 NQRAVLERRAALVERLYAEPP 617 (624)
T ss_pred cHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999998753
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-74 Score=609.41 Aligned_cols=494 Identities=22% Similarity=0.286 Sum_probs=406.5
Q ss_pred HHHHHHHHh-cCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHHHHh
Q 005468 83 DNFVRAVDT-FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSA 160 (695)
Q Consensus 83 ~~l~~~a~~-~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~~ 160 (695)
..+.++... .+|+.|+.+. +...+. +.+||+||.+++.++|+.|++ .|+ +||||+|++||.+|.++++|||++
T Consensus 13 n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~r 87 (528)
T COG0365 13 NALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATAR 87 (528)
T ss_pred hhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 346666653 4789999886 332223 789999999999999999987 578 999999999999999999999999
Q ss_pred cCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhccc--CCC-CceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 161 YSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS--EVP-TVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 161 ~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~--~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
+|++.+|+.+.++++++.+.+++++++++|+++........... ... .+..+++.+.. + +.|.
T Consensus 88 iGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~-----------~---~~~~ 153 (528)
T COG0365 88 IGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL-----------G---LWYD 153 (528)
T ss_pred cCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-----------c---ccHH
Confidence 99999999999999999999999999999998766543322110 000 01113333221 1 5677
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhh-ccccccCCCcEEEEeCChhhHHHHHH-H
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-TLGTKFYPSDVYISYLPLAHIYERAN-Q 315 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~~~~d~~l~~~pl~h~~~~~~-~ 315 (695)
++.+.... ..+..+.+.+|+++|+|||||||+||||+|+|+.++...... ...+.+.++|++++..++.|++|... .
T Consensus 154 ~~~~~~~~-~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v 232 (528)
T COG0365 154 EAVEKASE-KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSV 232 (528)
T ss_pred HHhhccCC-CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHH
Confidence 77655433 233444789999999999999999999999999776665443 34577779999999999999999998 6
Q ss_pred HHHHHcCcEEeEecC----ChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCC
Q 005468 316 VMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (695)
Q Consensus 316 ~~~l~~G~~~~~~~~----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (695)
+.+|..|++++++.+ ++..+++.|+++++|++++.|+.++.|.+.-.
T Consensus 233 ~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~----------------------------- 283 (528)
T COG0365 233 FSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL----------------------------- 283 (528)
T ss_pred HHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-----------------------------
Confidence 789999999999873 28899999999999999999999999876311
Q ss_pred CCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccC
Q 005468 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471 (695)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (695)
.++...++||.+.+.||||+++.++++.+.+|++|.+.||+||++++.....+ ....++.|.|+||
T Consensus 284 -------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG 349 (528)
T COG0365 284 -------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLPG 349 (528)
T ss_pred -------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCCCCCCC
Confidence 01112269999999999999999999999999999999999999965555545 5566667999999
Q ss_pred cEEEEeecCCCCCCCCCCCCCcceEEEeCC--ccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeee
Q 005468 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (695)
Q Consensus 472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~--~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (695)
+++.++|.+ ++.++.+ . |+|+++.+ +++++||+||+.+.+.+-.. ||.|||.+++|+||+++|+||.||+||
T Consensus 350 ~~~~vvdd~-g~~~~~~---~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~ 423 (528)
T COG0365 350 YAVRRVDDE-GNPVPPG---V-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIK 423 (528)
T ss_pred ceeEEECCC-CCcCCCC---c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceEe
Confidence 999999944 6665555 3 99999987 99999999999999998433 999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005468 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLAD 626 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 626 (695)
+ .|++|.|.|||++|.+||.|.||+|+|.++ ++.++|||++.++. . +. .+.++
T Consensus 424 v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~----------~----------~~---~L~~e 479 (528)
T COG0365 424 V-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGV----------E----------PN---ELAEE 479 (528)
T ss_pred c-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCC----------C----------hH---HHHHH
Confidence 7 799999999999999999999999999865 46789999999843 1 11 56778
Q ss_pred HHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 627 MDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 627 l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
|+++.+ +.+.++..|+.|.+++++| +|.+|||.|+.|++.+.+
T Consensus 480 i~~~vr-~~~~~~~~p~~i~fv~~LP------kT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 480 IRRHVA-RNIGPHAIPRKIRFVDELP------KTASGKIQRRLLRKILHK 522 (528)
T ss_pred HHHHHH-hccCcccCCceEEEecCCC------CCCcccHHHHHHHHHHhh
Confidence 888886 4555599999999999999 999999999999998874
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-72 Score=641.96 Aligned_cols=531 Identities=16% Similarity=0.175 Sum_probs=413.1
Q ss_pred CCCCCCHHHHHHHHHHh--cCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH
Q 005468 75 HPEIGTTHDNFVRAVDT--FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL 152 (695)
Q Consensus 75 ~~~~~tl~~~l~~~a~~--~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~ 152 (695)
....++..++|.++++. +||++|+.+. ....+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++||+
T Consensus 55 ~~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~ 131 (647)
T PTZ00237 55 GGELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPL 131 (647)
T ss_pred CCeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence 45667888999888765 7999999874 222223467999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEeccc---------chhHHHhcccCCC-CceEEEEECCCCC--
Q 005468 153 IVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ---------TLNSLLSCLSEVP-TVRLIVVIGGIDD-- 220 (695)
Q Consensus 153 ~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~l~~ii~~~~~~~-- 220 (695)
+++|||+++|++++|+++.++.+++.++|++++++++|+++. ..+.+.++..... ....++.+.....
T Consensus 132 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 211 (647)
T PTZ00237 132 IAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITS 211 (647)
T ss_pred HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccc
Confidence 999999999999999999999999999999999999999752 1222322222111 1234554421110
Q ss_pred --CCCCCCc-CCCceEeeHHHHHhcccc----CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHH-HHHHHHhhcccc
Q 005468 221 --QIPSLPI-TTGVQILTYSNLLSQGRS----NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN-LIASVAGATLGT 292 (695)
Q Consensus 221 --~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~-l~~~~~~~~~~~ 292 (695)
....... ........|++++..... ...+.....++|+++|+|||||||.||||+++|++ +.+.........
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~ 291 (647)
T PTZ00237 212 ESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII 291 (647)
T ss_pred ccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc
Confidence 0000000 000022457776543211 11122345789999999999999999999999998 444333333445
Q ss_pred ccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCC-------hhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHH
Q 005468 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGD-------NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365 (695)
Q Consensus 293 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~-------~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 365 (695)
....+|+++++.|++|+.+....+.+++.|+++++++++ +..+++.|+++++|+++++|++++.|.+......
T Consensus 292 ~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~ 371 (647)
T PTZ00237 292 EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEAT 371 (647)
T ss_pred CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccc
Confidence 677889999999999987766677899999999998753 5789999999999999999999998865210000
Q ss_pred hcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccc
Q 005468 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGM 445 (695)
Q Consensus 366 ~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~ 445 (695)
.. . .....++||.+++||+++++++.+++++.+|+++++.||+
T Consensus 372 --------------------------~~---~--------~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~ 414 (647)
T PTZ00237 372 --------------------------II---R--------SKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQ 414 (647)
T ss_pred --------------------------cc---c--------cccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeech
Confidence 00 0 0001158999999999999999999999999999999999
Q ss_pred ccccccccccCCCC-CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCC---ccchhccCChhhhhcccCC-
Q 005468 446 TETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVIDE- 520 (695)
Q Consensus 446 TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~---~v~~gY~~~~~~t~~~~~~- 520 (695)
||+++.++...+.. ...+++|+|+|+++++|+| +++..++.|+ .|||+++|| +++.|||++++.+.+.|..
T Consensus 415 TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge---~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~ 490 (647)
T PTZ00237 415 TEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELNVNE---IGEVAFKLPMPPSFATTFYKNDEKFKQLFSKF 490 (647)
T ss_pred HHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCCCCC---ceEEEEeccCCchhhCceeCCHHHHHHHHhCC
Confidence 99986554433322 3458999999999999999 5677776665 899999986 7899999999999988854
Q ss_pred CCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHH
Q 005468 521 DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALK 597 (695)
Q Consensus 521 ~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~ 597 (695)
+|||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ ++.++|+|+++++..
T Consensus 491 ~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~- 568 (647)
T PTZ00237 491 PGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQS- 568 (647)
T ss_pred CCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCcc-
Confidence 799999999999999999999999999997 899999999999999999999999999764 478999999885310
Q ss_pred HHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 598 AWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
+.. .+ .+.+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|+.|++.+.
T Consensus 569 ------~~~--------~~---~~~l~~~i~~~~~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~Lr~~~~ 622 (647)
T PTZ00237 569 ------NQS--------ID---LNKLKNEINNIIT-QDIESLAVLRKIIIVNQLP------KTKTGKIPRQIISKFLN 622 (647)
T ss_pred ------ccC--------CC---HHHHHHHHHHHHH-hhcCccccCcEEEEcCCCC------CCCCccEeHHHHHHHHc
Confidence 000 00 1245677778876 7899999999999999999 99999999999998874
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-72 Score=628.88 Aligned_cols=524 Identities=22% Similarity=0.253 Sum_probs=412.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
.-|+.++|.+.++++|+++|+... + +.+||+||.+++.++|++|.+.|+++||+|+|+++|+++|+++++|
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la 76 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLA 76 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 358999999999999999999643 2 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcc-cCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
|+++|++++||++.++.+++.++++++++++++++........... ..++.++.++.+++....... .......+
T Consensus 77 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~ 152 (563)
T PLN02860 77 VACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI----FLNSFLTT 152 (563)
T ss_pred HhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccccc----chhhcccc
Confidence 9999999999999999999999999999999999876533222221 233445555554432110000 00011122
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (695)
+++...............++++++|+|||||||.||||+++|++++.........+++.++|++++.+|++|.+++...+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 232 (563)
T PLN02860 153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAL 232 (563)
T ss_pred chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHH
Confidence 22221111111111234578999999999999999999999999988776666667888999999999999999998888
Q ss_pred HHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 005468 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (695)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (695)
.++..|+++++.+ +++..+++.|+++++|++.++|+++..+.+......
T Consensus 233 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------------------------ 282 (563)
T PLN02860 233 AMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM------------------------------ 282 (563)
T ss_pred HHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh------------------------------
Confidence 8999999998876 799999999999999999999999998876321000
Q ss_pred hhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC---------------
Q 005468 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD--------------- 459 (695)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~--------------- 459 (695)
.....+++|.+++||+++++++.+.|++.| ++++++.||+||+++.++.....+
T Consensus 283 ----------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (563)
T PLN02860 283 ----------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQ 352 (563)
T ss_pred ----------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcc
Confidence 000115899999999999999999999988 789999999999976544322111
Q ss_pred --------CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEE
Q 005468 460 --------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531 (695)
Q Consensus 460 --------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~ 531 (695)
....++|+|+|+++++|++.+ .+ +.|||+|+|++++.|||++|+.|.+.|+.+|||+|||+|+
T Consensus 353 ~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g---~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~ 423 (563)
T PLN02860 353 TKSSSVHQPQGVCVGKPAPHVELKIGLDE------SS---RVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGW 423 (563)
T ss_pred cccccccccCCcccCCccCCcEEEEecCC------CC---ceeEEEEecCcccccccCCccccchhccCCCeEEccceEE
Confidence 112378999999999999843 23 3899999999999999999999999998899999999999
Q ss_pred EecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcc
Q 005468 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYE 608 (695)
Q Consensus 532 ~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~ 608 (695)
+|+||+++|+||+||+||+ +|++|+|.+||+++.+||+|.+|+|+|.++ ++.++|+|++.++. .|...
T Consensus 424 ~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~------ 494 (563)
T PLN02860 424 IDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGW--IWSDN------ 494 (563)
T ss_pred EcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCcc--ccccc------
Confidence 9999999999999999996 999999999999999999999999999654 46899999987642 00000
Q ss_pred cHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEe-ecCCCCCCCccCccccCChHHHHHHHHHHHHHH
Q 005468 609 NLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLV-LEPFTVENGLLTPTFKIKRPQAKQYFAKAIADM 681 (695)
Q Consensus 609 ~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~-~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~l 681 (695)
.......+ .....++|.+++++.+|+.|++|+.|+++ +++| +|++|||+|++|++++.++++.+
T Consensus 495 ~~~~~~~~---~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP------~t~~GKi~r~~L~~~~~~~~~~~ 559 (563)
T PLN02860 495 EKENAKKN---LTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFP------LTTTGKIRRDEVRREVLSHLQSL 559 (563)
T ss_pred cchhhccc---ccccHHHHHHHHhhCcccccccceEEEEEecCCC------CCcccchhHHHHHHHHHHHHhcc
Confidence 00000000 01224567777764579999999999775 6699 99999999999999887766543
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-71 Score=633.33 Aligned_cols=522 Identities=16% Similarity=0.190 Sum_probs=409.6
Q ss_pred CCCCHHHHHHHHHH-hcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 77 EIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 77 ~~~tl~~~l~~~a~-~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
..+..+++|.++++ .+|+++|+.+. ....+..+.+||+||.+++.++|++|++.|+++||+|+|+++|++|+++++
T Consensus 86 ~~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~ 162 (666)
T PLN02654 86 KTNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAM 162 (666)
T ss_pred EeeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34566788888776 48999999874 222334578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchh---------HHHhcccCC----CCceEEEEECCCCCCC
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN---------SLLSCLSEV----PTVRLIVVIGGIDDQI 222 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~---------~~~~~~~~~----~~l~~ii~~~~~~~~~ 222 (695)
|||+++|++++|+++.++.+++.+++++++++++|++..... .+....... ..+..++..+......
T Consensus 163 lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
T PLN02654 163 LACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMK 242 (666)
T ss_pred HHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccc
Confidence 999999999999999999999999999999999999875321 111111110 1122233322211000
Q ss_pred CCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHH-HHhhccccccCCCcEEE
Q 005468 223 PSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVYI 301 (695)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l 301 (695)
.............|+++..... ...+.....++|+++|+|||||||.||||+++|++++.. .......+++.++|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~ 321 (666)
T PLN02654 243 REDTKWQEGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYW 321 (666)
T ss_pred ccccccccCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEE
Confidence 0000000001234555543221 112223356899999999999999999999999998643 34445557889999999
Q ss_pred EeCChhhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHH
Q 005468 302 SYLPLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (695)
Q Consensus 302 ~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 375 (695)
+++|+.|+++... .+.+|+.|+++++++ .++..+++.|+++++|++.++|+++..|.+......
T Consensus 322 ~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------- 391 (666)
T PLN02654 322 CTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV---------- 391 (666)
T ss_pred EcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcccc----------
Confidence 9999999999766 567899999999986 378899999999999999999999998865310000
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Cccccccccccccccc
Q 005468 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLI 452 (695)
Q Consensus 376 ~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~ 452 (695)
.....++||.+++||+++++++.+++.+.+| +++.+.||+||+++..
T Consensus 392 ------------------------------~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~ 441 (666)
T PLN02654 392 ------------------------------TRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFM 441 (666)
T ss_pred ------------------------------ccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCee
Confidence 0000158999999999999999999999887 7899999999998766
Q ss_pred cccCCC--CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeC--CccchhccCChhhhhcccC--CCCeeec
Q 005468 453 SQLDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHT 526 (695)
Q Consensus 453 ~~~~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~T 526 (695)
+...+. ...++++|.|++|++++|+| ++++.++.+. .|||+|++ |+++.|||+|++.+.+.+. .+|||+|
T Consensus 442 ~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~---~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~T 517 (666)
T PLN02654 442 ITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGEC---SGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFS 517 (666)
T ss_pred eccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCC---ceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEe
Confidence 554433 24678999999999999999 5556555444 79999999 7899999999999887652 2799999
Q ss_pred ccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHc
Q 005468 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASE 603 (695)
Q Consensus 527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~ 603 (695)
||+|++|+||+++|+||+||+||+ +|++|+|.|||+++.+||.|.+++|+|.++ ++.++|+|++.++.
T Consensus 518 GD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~-------- 588 (666)
T PLN02654 518 GDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGV-------- 588 (666)
T ss_pred CceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCC--------
Confidence 999999999999999999999997 899999999999999999999999999764 46899999988631
Q ss_pred CCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 604 GIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
. .+ +.+.++|+++++ .+|+.|++|+.|++++++| +|++||++|+.|++.+..
T Consensus 589 --~--------~~----~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 589 --P--------YS----EELRKSLILTVR-NQIGAFAAPDKIHWAPGLP------KTRSGKIMRRILRKIASR 640 (666)
T ss_pred --C--------CC----HHHHHHHHHHHH-HhCCCCcCCCEEEECCCCC------CCCCcCchHHHHHHHHcC
Confidence 0 01 234556777776 7899999999999999999 999999999999988754
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-71 Score=628.40 Aligned_cols=519 Identities=19% Similarity=0.246 Sum_probs=419.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
...+..+++|.++++++||++|+.+. +...+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++++++++
T Consensus 54 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 130 (625)
T TIGR02188 54 GELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAM 130 (625)
T ss_pred CEEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 34567888898889999999999875 322344678999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch---------hHHHhcccCCC-CceEEEEECCCCCCCCCC
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVP-TVRLIVVIGGIDDQIPSL 225 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~ 225 (695)
|||+++|++++|+++.++.+++.+++++++++++|+++... ..+.+.....+ .++.+++++....... +
T Consensus 131 lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 209 (625)
T TIGR02188 131 LACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP-W 209 (625)
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcC-c
Confidence 99999999999999999999999999999999999986532 23333333444 4666776654321110 0
Q ss_pred CcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHH-hhccccccCCCcEEEEeC
Q 005468 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISYL 304 (695)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~ 304 (695)
. ......|+++...... ........++++++|+|||||||.||||+++|++++.... .....+++.++|++++.+
T Consensus 210 ~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 285 (625)
T TIGR02188 210 V---EGRDVWWHDLMAKASA-YCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTA 285 (625)
T ss_pred c---ccccccHHHHHhhcCC-CCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECC
Confidence 0 0112346666544322 2223346779999999999999999999999999875543 333446788999999999
Q ss_pred ChhhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHH
Q 005468 305 PLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (695)
Q Consensus 305 pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (695)
|++|+.+... .+.+|+.|+++++++ .++..+++.|+++++|++.++|++++.|.+.....
T Consensus 286 ~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------- 351 (625)
T TIGR02188 286 DVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW-------------- 351 (625)
T ss_pred CchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc--------------
Confidence 9999988765 667899999999876 37899999999999999999999998886521000
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Ccccccccccccccccccc
Q 005468 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQL 455 (695)
Q Consensus 379 a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~ 455 (695)
.+....++||.+++||+++++++.+++.+.++ +++++.||+||+++.++..
T Consensus 352 --------------------------~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~ 405 (625)
T TIGR02188 352 --------------------------VKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITP 405 (625)
T ss_pred --------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeec
Confidence 00011158999999999999999999998885 7899999999998765544
Q ss_pred CCC--CCCCCCcCCCccCcEEEEeecCCCCCCC-CCCCCCcceEEEeC--CccchhccCChhhhhcccC--CCCeeeccc
Q 005468 456 DEG--DNLSGHVGSPNAACEIKLVDVPEMNYTS-EDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTGD 528 (695)
Q Consensus 456 ~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~-~~~~~~~GEl~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~TGD 528 (695)
.+. ...++++|+|++|++++|+| ++++.++ .|+ .|||+|+| |+++.|||++++.+.+.+. .+|||+|||
T Consensus 406 ~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~---~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD 481 (625)
T TIGR02188 406 LPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGE---GGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGD 481 (625)
T ss_pred CCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCC---eEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCc
Confidence 332 35678999999999999999 6666666 565 89999999 6899999999998887763 479999999
Q ss_pred EEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCC
Q 005468 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGI 605 (695)
Q Consensus 529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~ 605 (695)
+|++|+||+++|+||+||+||+ +|++|+|.+||++|.+||.|.+|+|+|.++ ++.++|+|+++++.
T Consensus 482 l~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~---------- 550 (625)
T TIGR02188 482 GARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGY---------- 550 (625)
T ss_pred eEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCC----------
Confidence 9999999999999999999997 899999999999999999999999999654 46889999988642
Q ss_pred CcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 606 QYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 606 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
. .+ +.+.++|+++++ .+|+.+++|+.|++++++| +|++||++|+.|++.+..
T Consensus 551 ~--------~~----~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~lP------~t~sGKi~r~~l~~~~~~ 602 (625)
T TIGR02188 551 E--------PD----DELRKELRKHVR-KEIGPIAKPDKIRFVPGLP------KTRSGKIMRRLLRKIAAG 602 (625)
T ss_pred C--------CC----HHHHHHHHHHHH-hhcCCCccCcEEEECCCCC------CCCCccchHHHHHHHHcC
Confidence 0 01 124566777776 7899999999999999999 999999999999987653
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=614.13 Aligned_cols=496 Identities=19% Similarity=0.219 Sum_probs=397.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...++.+.|.+.++++|+++|+.+. +. +.+||+||.++++++|++|.+. +||+|+|+++|+++|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~l 85 (539)
T PRK06334 17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYF 85 (539)
T ss_pred cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHH
Confidence 3478999999999999999998643 21 3599999999999999999873 89999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCC-CceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP-TVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
||+++|+++||+++.++.+++.+++++++++++|++.+....+.+...... ....++.+++.... ..
T Consensus 86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~ 153 (539)
T PRK06334 86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LS 153 (539)
T ss_pred HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------cc
Confidence 999999999999999999999999999999999998776655544322100 01124443321100 01
Q ss_pred HHHHHhccc----c-----CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCCh
Q 005468 236 YSNLLSQGR----S-----NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (695)
Q Consensus 236 ~~~~~~~~~----~-----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl 306 (695)
+.+....+. . .........++++++|+|||||||.||||++||+++..........+.+.++|++++++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~ 233 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPP 233 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecch
Confidence 111110000 0 0001223567999999999999999999999999999887777666788899999999999
Q ss_pred hhHHHHHH-HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 005468 307 AHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (695)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k 383 (695)
+|.+++.. .+.++..|+++++.. +++..+++.|+++++|++.++|+++..+++.....
T Consensus 234 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------- 294 (539)
T PRK06334 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ------------------- 294 (539)
T ss_pred HhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc-------------------
Confidence 99999876 567899999998865 68999999999999999999999999887632110
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC-CC
Q 005468 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-NL 461 (695)
Q Consensus 384 ~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-~~ 461 (695)
....++||.+++||+++++++.+++.+.+ ++.+++.||+||++.+++...... ..
T Consensus 295 -----------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 351 (539)
T PRK06334 295 -----------------------ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKH 351 (539)
T ss_pred -----------------------ccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCC
Confidence 00115899999999999999999999988 688999999999987666544332 34
Q ss_pred CCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhccc-CCCCeeecccEEEEecCCcEEE
Q 005468 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI-DEDGWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 462 ~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~-~~~gw~~TGDlg~~~~dG~l~i 540 (695)
.+++|+|+++++++|+|.+++..++.|+ .|||+|+|++++.|||++++.+.... +.+|||+|||+|++|++|+++|
T Consensus 352 ~~~vG~p~~g~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~ 428 (539)
T PRK06334 352 ESCVGMPIRGMDVLIVSEETKVPVSSGE---TGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFL 428 (539)
T ss_pred CCcCceecCCCEEEEEcCCCCccCCCCc---eEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEE
Confidence 5689999999999999966667777776 89999999999999999998765432 3578999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcce------EEEEeeCCCC-eEEEEEEeCHHHHHHHHHHcCCCcccHHHh
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ------CFVYGDSFNS-ALVAIVSVDQDALKAWAASEGIQYENLEQL 613 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~------~~V~g~~~~~-~~va~vv~~~~~~~~~~~~~~~~~~~~~~~ 613 (695)
+||.||+||+ +|++|+|.|||++|.+||+|.+ ++|+|.+++. .++++++....
T Consensus 429 ~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------------------- 488 (539)
T PRK06334 429 KGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPTS------------------- 488 (539)
T ss_pred EeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccCC-------------------
Confidence 9999999997 8999999999999999999998 7888877543 34444443210
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 614 CNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 614 ~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.+++++++++..++.|++|+.|++++++| +|++|||+|++|++....
T Consensus 489 ----------~~~~~~~l~~~~~~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 535 (539)
T PRK06334 489 ----------ISEVNDILKNSKTSSILKISYHHQVESIP------MLGTGKPDYCSLNALAKS 535 (539)
T ss_pred ----------hHHHHHHHHhcCCcccccchheeeecccc------cccCCcccHHHHHHHHHH
Confidence 23455666544588999999999999999 999999999999887554
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-70 Score=618.95 Aligned_cols=520 Identities=23% Similarity=0.290 Sum_probs=417.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|++++|.+.++++||++|+.+... .+.....+++||+||.+++.++|++|+++|+++||+|+++++|+++|++++|
T Consensus 23 ~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l 101 (632)
T PRK07529 23 LPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW 101 (632)
T ss_pred CCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 446899999999999999999987411 1112235689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccc-----hhHHHhcccCCCCceEEEEECCCCCC--CCCCC---
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQ--IPSLP--- 226 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~~~~--~~~~~--- 226 (695)
||+++| +++|+++.++++++.+++++++++++|++... ..++.......+.++.++.++..... ...+.
T Consensus 102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 180 (632)
T PRK07529 102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPL 180 (632)
T ss_pred HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccc
Confidence 999999 56999999999999999999999999997543 23444444556677777776543210 00000
Q ss_pred --cCCCceEeeHHHHHhccccCC-CCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEe
Q 005468 227 --ITTGVQILTYSNLLSQGRSNL-QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303 (695)
Q Consensus 227 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~ 303 (695)
...+..+..|.+.+....... .......++++++|+|||||||.||||++||+++++........+.+.++|++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 260 (632)
T PRK07529 181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCG 260 (632)
T ss_pred cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 001223456666655433221 12233467999999999999999999999999999888776666778899999999
Q ss_pred CChhhHHHHHH-HHHHHHcCcEEeEecC----C---hhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHH
Q 005468 304 LPLAHIYERAN-QVMTVYSGVAVGFYQG----D---NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (695)
Q Consensus 304 ~pl~h~~~~~~-~~~~l~~G~~~~~~~~----~---~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 375 (695)
+|++|.++... .+.+++.|+++++.+. + ...+++.++++++|++.++|+++..+.+....
T Consensus 261 ~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------ 328 (632)
T PRK07529 261 LPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD------------ 328 (632)
T ss_pred cCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc------------
Confidence 99999999876 5678999999998651 2 35788999999999999999999988652100
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccccccc
Q 005468 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455 (695)
Q Consensus 376 ~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~ 455 (695)
....+++|.+++||+++++++.+++++.+|++++++||+||++++++..
T Consensus 329 -------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~ 377 (632)
T PRK07529 329 -------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVN 377 (632)
T ss_pred -------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccC
Confidence 0011589999999999999999999999999999999999998776655
Q ss_pred CCCC-CCCCCcCCCccCcEEEEeecCC-C---CCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEE
Q 005468 456 DEGD-NLSGHVGSPNAACEIKLVDVPE-M---NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530 (695)
Q Consensus 456 ~~~~-~~~~~vG~p~~~~~v~i~d~~~-~---~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg 530 (695)
.... ...+++|.|+|+++++|+..++ + ..++.|+ .|||+|+|++++.||++++ .+.+.|..+|||+|||+|
T Consensus 378 ~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~---~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg 453 (632)
T PRK07529 378 PPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDE---VGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLG 453 (632)
T ss_pred CccccccCCCcccccCCceEEEEEcCCCCcccccCCCCC---ceEEEEECCCccccccCCc-cccccccCCCceEcCcEE
Confidence 4432 4678999999999999975433 3 3455555 8999999999999999865 455666678999999999
Q ss_pred EEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCc
Q 005468 531 MWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQY 607 (695)
Q Consensus 531 ~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~ 607 (695)
++|+||+++|.||.||+||+ +|++|+|.+||++|.+||+|.+|+|+|.++ ++.++|+|++.++. ..+
T Consensus 454 ~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~--------~~~- 523 (632)
T PRK07529 454 RIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGA--------SAT- 523 (632)
T ss_pred EEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCC--------CCC-
Confidence 99999999999999999996 999999999999999999999999999654 46889999987632 111
Q ss_pred ccHHHhhCCHHHHHHHHHHHHHHHHhcCCC-CcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHH
Q 005468 608 ENLEQLCNDPRARAAVLADMDSLGREAQLR-GFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAI 678 (695)
Q Consensus 608 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~-~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i 678 (695)
.++|.++++ .+++ .+++|+.|++++++| +|++||++|++|++.+..+.
T Consensus 524 ----------------~~~l~~~~~-~~l~~~~~~P~~i~~v~~lP------~t~~GKi~r~~Lr~~~~~~~ 572 (632)
T PRK07529 524 ----------------EAELLAFAR-DHIAERAAVPKHVRILDALP------KTAVGKIFKPALRRDAIRRV 572 (632)
T ss_pred ----------------HHHHHHHHH-HhcchhccCCcEEEEecCCC------CCCCCcccHHHHHHHHHHHH
Confidence 345566665 4565 579999999999999 99999999999999887643
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-70 Score=622.18 Aligned_cols=524 Identities=16% Similarity=0.168 Sum_probs=413.7
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..+...++|.++++.+|+++|+.+. +...+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++++++++|
T Consensus 50 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~l 126 (628)
T TIGR02316 50 RTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAML 126 (628)
T ss_pred EeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4566778898888899999999875 3233345789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch---------hHHHhcccCC-CCceEEEEECCCCCCCCCCC
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEV-PTVRLIVVIGGIDDQIPSLP 226 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~-~~l~~ii~~~~~~~~~~~~~ 226 (695)
||+++|++++|+++.++.+++.+++++++++++|+++... ..+..+.... .....+++++........
T Consensus 127 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-- 204 (628)
T TIGR02316 127 ACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRL-- 204 (628)
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCc--
Confidence 9999999999999999999999999999999999976421 1222222111 234556666542111000
Q ss_pred cCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHH-HHhhccccccCCCcEEEEeCC
Q 005468 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVYISYLP 305 (695)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~p 305 (695)
.......|.++.........+.....++++++|+|||||||.||||+++|++++.. .......+++.++|++++++|
T Consensus 205 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 282 (628)
T TIGR02316 205 --IPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASD 282 (628)
T ss_pred --ccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCC
Confidence 00012456666543322112223346799999999999999999999999997644 344445578889999999999
Q ss_pred hhhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 005468 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (695)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (695)
++|+++... .+.+|+.|+++++++ .++..+++.|+++++|+++++|++++.|.+.....
T Consensus 283 ~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------- 347 (628)
T TIGR02316 283 VGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW--------------- 347 (628)
T ss_pred CCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc---------------
Confidence 999998755 667899999999976 36888999999999999999999998775421000
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-
Q 005468 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG- 458 (695)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~- 458 (695)
.+....++||.+++||+++++++.+++.+.+|.++++.||+||++..++.....
T Consensus 348 -------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~ 402 (628)
T TIGR02316 348 -------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGL 402 (628)
T ss_pred -------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCC
Confidence 000111589999999999999999999998999999999999998544333222
Q ss_pred ---CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCC---ccchhccCChhhhhccc---CCCCeeecccE
Q 005468 459 ---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVI---DEDGWFHTGDI 529 (695)
Q Consensus 459 ---~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~---~v~~gY~~~~~~t~~~~---~~~gw~~TGDl 529 (695)
....+++|.|+||++++|+|.++++.++.|+ .|||+|+|| +++.|||++++.+.+.+ ..++||+|||+
T Consensus 403 ~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~---~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~ 479 (628)
T TIGR02316 403 DLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNE---KGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDW 479 (628)
T ss_pred CcCCCCCCCcccCcCCceEEEEECCCCCCCCCCC---cEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCce
Confidence 2356889999999999999965777777776 899999998 57899999998877654 24789999999
Q ss_pred EEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCC
Q 005468 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQ 606 (695)
Q Consensus 530 g~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~ 606 (695)
|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ ++.++++|++.+... .
T Consensus 480 g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~--------~- 549 (628)
T TIGR02316 480 GIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDS--------A- 549 (628)
T ss_pred EEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcc--------c-
Confidence 999999999999999999997 899999999999999999999999999654 467889998875310 0
Q ss_pred cccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 607 YENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 607 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
.+..-...+.++|+++++ .+|+.|++|+.|++++++| +|++||++|+.|++.+.
T Consensus 550 --------~~~~~~~~~~~~i~~~~~-~~L~~~~~P~~v~~v~~lP------~t~sGKi~r~~L~~~~~ 603 (628)
T TIGR02316 550 --------GDAHDPHAVETGMMDCVV-RQLGAVARPARVYFVAALP------KTRSGKLLRRSIQALAE 603 (628)
T ss_pred --------ccccchHHHHHHHHHHHH-HhcCCCcCCCEEEEcCCCC------CCCchHHHHHHHHHHHc
Confidence 000001234567777776 7899999999999999999 99999999999998764
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-70 Score=616.10 Aligned_cols=494 Identities=21% Similarity=0.250 Sum_probs=411.8
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.++.++|.+.++++||++|+.+. + +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~ 119 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA 119 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999753 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (695)
+++|+++||+++.++.+++.+++++++++++|++.+....+.......+.++.++....... .......++++
T Consensus 120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 192 (549)
T PRK07788 120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDE-------PSGSTDETLDD 192 (549)
T ss_pred HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccc-------cCCcCcccHHH
Confidence 99999999999999999999999999999999998877666554444444444433222110 01123456777
Q ss_pred HHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHH
Q 005468 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (695)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 318 (695)
+...... ...+..++++++++|||||||.||||+++|+++.+.+......+.+.++|++++.+|++|.+++...+.+
T Consensus 193 ~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 269 (549)
T PRK07788 193 LIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLA 269 (549)
T ss_pred HhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHH
Confidence 7654322 1222345788999999999999999999999999988877777888899999999999999999887888
Q ss_pred HHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 005468 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (695)
Q Consensus 319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (695)
+..|+++++.. +++..+++.++++++|++.++|+++..+++......
T Consensus 270 l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------- 317 (549)
T PRK07788 270 MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL-------------------------------- 317 (549)
T ss_pred HHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc--------------------------------
Confidence 99999998876 799999999999999999999999998875311100
Q ss_pred HHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCccCcEEEE
Q 005468 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKL 476 (695)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i 476 (695)
.....+++|.+++||+++++++.+++.+.+++++++.||+||++..+...... ....+++|.|+++++++|
T Consensus 318 --------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i 389 (549)
T PRK07788 318 --------AKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKI 389 (549)
T ss_pred --------CCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEE
Confidence 00011589999999999999999999999999999999999998655433222 245678999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeee
Q 005468 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (695)
Q Consensus 477 ~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v 556 (695)
+| +++..++.|+ .|||+|+|++++.||+++++. + . .+|||+|||+|++|+||+++|+||.||+||+ +|++|
T Consensus 390 ~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v 460 (549)
T PRK07788 390 LD-ENGNEVPRGV---VGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVS-GGENV 460 (549)
T ss_pred EC-CCcCCCCCCC---eEEEEEeCCCccccccCCCcc--c-c-cCCceecCceEEEcCCCCEEEeccCcceEEE-CCEEE
Confidence 99 5666666666 899999999999999998865 2 2 5799999999999999999999999999996 99999
Q ss_pred chHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHh
Q 005468 557 AAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGRE 633 (695)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 633 (695)
+|.+||+++.+||.|.+++|++.++ ++.++|+|+++++. ..+ .++|+++++
T Consensus 461 ~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~--------~~~-----------------~~~l~~~~~- 514 (549)
T PRK07788 461 FPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGA--------ALD-----------------EDAIKDYVR- 514 (549)
T ss_pred CHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCC--------CCC-----------------HHHHHHHHH-
Confidence 9999999999999999999999654 46789999987631 111 355666775
Q ss_pred cCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 634 AQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 634 ~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
++|+.|++|..|++++++| +|++||++|++|++
T Consensus 515 ~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~ 547 (549)
T PRK07788 515 DNLARYKVPRDVVFLDELP------RNPTGKVLKRELRE 547 (549)
T ss_pred HhhhcCCCCcEEEEeCCCC------CCCCcCEeHHHhhc
Confidence 6899999999999999999 99999999999975
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-70 Score=621.38 Aligned_cols=517 Identities=17% Similarity=0.236 Sum_probs=415.7
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
.+...++|.++++++||++|+.+. +...+..+.+||+||++++.++|++|++.|+++||+|+|+++|++++++++||
T Consensus 66 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 142 (637)
T PRK00174 66 LNVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLA 142 (637)
T ss_pred eEHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 344577888889999999999875 32223457799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch---------hHHHhcccCCCCceEEEEECCCCCCCCCCCcC
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~ 228 (695)
|+++|++++|+++.++.+++.+++++++++++|+++... +.+.+....++.++.+++++....... .
T Consensus 143 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 218 (637)
T PRK00174 143 CARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD-W--- 218 (637)
T ss_pred HHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC-c---
Confidence 999999999999999999999999999999999976532 223333333455666776654321110 0
Q ss_pred CCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHh-hccccccCCCcEEEEeCChh
Q 005468 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYLPLA 307 (695)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~ 307 (695)
.......|+++...... ..+.....++|+++|+|||||||.||||+++|++++..... ....+++.++|++++.+|++
T Consensus 219 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 297 (637)
T PRK00174 219 VEGRDLWWHELVAGASD-ECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVG 297 (637)
T ss_pred CCCCcccHHHHHhhcCC-CCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCch
Confidence 01112456666543221 22233456789999999999999999999999998765433 33346788899999999999
Q ss_pred hHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 005468 308 HIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYN 381 (695)
Q Consensus 308 h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 381 (695)
|..+... .+.+|+.|+++++++ .++..+++.|+++++|++.++|++++.+.+......
T Consensus 298 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------------- 361 (637)
T PRK00174 298 WVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP---------------- 361 (637)
T ss_pred HhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc----------------
Confidence 9998765 667899999999875 378899999999999999999999988865210000
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---CccccccccccccccccccCCC
Q 005468 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQLDEG 458 (695)
Q Consensus 382 ~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~~ 458 (695)
.....++||.+++||+++++++.+++.+.++ +++++.||+||+++.++...+.
T Consensus 362 ------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 417 (637)
T PRK00174 362 ------------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPG 417 (637)
T ss_pred ------------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCC
Confidence 0001158999999999999999999998886 7899999999998766544332
Q ss_pred --CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeC--CccchhccCChhhhhccc--CCCCeeecccEEEE
Q 005468 459 --DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGDIGMW 532 (695)
Q Consensus 459 --~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~t~~~~--~~~gw~~TGDlg~~ 532 (695)
....+++|.|++|++++|+| +++..++.|+ .|||+|+| |++++|||++++.+.+.+ ..+|||+|||+|++
T Consensus 418 ~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~ 493 (637)
T PRK00174 418 ATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGE---GGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARR 493 (637)
T ss_pred CCCcCCCcccCCCCCceEEEEC-CCCCCCCCCC---cEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEE
Confidence 24567899999999999999 5666666665 89999999 699999999999888765 34799999999999
Q ss_pred ecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCccc
Q 005468 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYEN 609 (695)
Q Consensus 533 ~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~ 609 (695)
|+||+++|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.++ ++.++|+|++.++. .
T Consensus 494 d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~----------~--- 559 (637)
T PRK00174 494 DEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGE----------E--- 559 (637)
T ss_pred cCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCC----------C---
Confidence 999999999999999997 899999999999999999999999999653 46899999987632 0
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 610 LEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 610 ~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.+ +.+.++|+++++ +.|+.|++|..|++++++| +|++||++|++|++.+..
T Consensus 560 -----~~----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 610 (637)
T PRK00174 560 -----PS----DELRKELRNWVR-KEIGPIAKPDVIQFAPGLP------KTRSGKIMRRILRKIAEG 610 (637)
T ss_pred -----CC----HHHHHHHHHHHH-hhcCCccCCCEEEEcCCCC------CCCCcchHHHHHHHHHcC
Confidence 01 233556777775 7899999999999999999 999999999999987653
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-71 Score=539.48 Aligned_cols=498 Identities=21% Similarity=0.268 Sum_probs=431.9
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..|+.++|.++|.++||++|+++. + +.+||+||+++++++|.+|+++|+++||+|.+.++|..|+++++||
T Consensus 27 d~~l~d~L~~~A~~~pdriAv~d~-----~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA 97 (542)
T COG1021 27 DRTLTDILTDHAARYPDRIAVIDG-----E----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA 97 (542)
T ss_pred CCcHHHHHHHHHhhcCCceEEecC-----c----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence 479999999999999999999853 3 3489999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccc-----hhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCce
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
++++|+.+|.--|.....++.+....++++.+|++... ...+.+...+.+.++++++.++.+..
T Consensus 98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~----------- 166 (542)
T COG1021 98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP----------- 166 (542)
T ss_pred HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------
Confidence 99999999988888889999999999999999998643 34455566678889999988554311
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHH
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (695)
......+........+..+.++++++++..+.||||.||.+..||.....++....+..+++..+++++.+|..|.|-+
T Consensus 167 -~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfpl 245 (542)
T COG1021 167 -SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPL 245 (542)
T ss_pred -chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCC
Confidence 1122223333333445567788999999999999999999999999999998888888999999999999999999998
Q ss_pred HH--HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Q 005468 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (695)
Q Consensus 313 ~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (695)
.. .+..++.|+++|+.+ .++...+..|+++++|+...||.+...+++......
T Consensus 246 ssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~------------------------ 301 (542)
T COG1021 246 SSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWER------------------------ 301 (542)
T ss_pred CCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhccc------------------------
Confidence 86 667899999999977 799999999999999999999999998887533211
Q ss_pred CCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC---CCCCCcC
Q 005468 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVG 466 (695)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG 466 (695)
...++||.+-+||+.+++++.+++...+||.+.+.|||.|.- +..+..+| .-..+-|
T Consensus 302 ------------------~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGL--vnyTRLDDp~E~i~~TQG 361 (542)
T COG1021 302 ------------------ADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGL--VNYTRLDDPPEIIIHTQG 361 (542)
T ss_pred ------------------CCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhh--hcccccCCchHheeecCC
Confidence 111699999999999999999999999999999999999954 34444444 3346789
Q ss_pred CCc-cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCC
Q 005468 467 SPN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (695)
Q Consensus 467 ~p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (695)
+|+ |.-|++|+| .+++.+.+|+ .|+|..|||-.++|||+.|+.++.+|+.+|+|+|||++++|+||++.+.||.|
T Consensus 362 rPlsP~DEvrvvD-~dg~pv~pGE---~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~K 437 (542)
T COG1021 362 RPLSPDDEVRVVD-ADGNPVAPGE---VGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVK 437 (542)
T ss_pred CcCCCcceeEEec-CCCCCCCCCC---cceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeeh
Confidence 997 889999999 7778888887 99999999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005468 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAA 622 (695)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (695)
|+|+ ++||+|..+|||+.|..||.|.+|++++.++ ++..+|+|++.+... .
T Consensus 438 DQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~---------~---------------- 491 (542)
T COG1021 438 DQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPL---------R---------------- 491 (542)
T ss_pred hhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCC---------C----------------
Confidence 9999 7999999999999999999999999999775 689999999987421 1
Q ss_pred HHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 623 VLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 623 i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
..+|+.++++.+|..|++|.+|.+++.+| +|+-|||++++|++++...
T Consensus 492 -~~qlr~~L~~~GlAa~K~PDrie~v~~~P------~T~VGKIdKk~Lr~~l~~~ 539 (542)
T COG1021 492 -AAQLRRFLRERGLAAFKLPDRIEFVDSLP------LTAVGKIDKKALRRRLASR 539 (542)
T ss_pred -HHHHHHHHHHcchhhhcCCcceeecccCC------CcccccccHHHHHHHhhhh
Confidence 45677777789999999999999999999 9999999999999987643
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-69 Score=607.04 Aligned_cols=507 Identities=18% Similarity=0.250 Sum_probs=419.1
Q ss_pred CCCCHHHHHHHHHH-hcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 77 EIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 77 ~~~tl~~~l~~~a~-~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
..+.+++++.+++. .+|+++|+.+. +.. ..+.+||+||.+++.++|++|.++|+++||+|+|+++|+++|++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 115 (570)
T PRK04319 41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL 115 (570)
T ss_pred ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 45667788988887 58999999875 322 2367999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|++++|+++.++++++.+++++++++++|++......... ..++.++.++.+++... ......+
T Consensus 116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~ 185 (570)
T PRK04319 116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVE--------EGPGTLD 185 (570)
T ss_pred HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcC--------CCcCccC
Confidence 9999999999999999999999999999999999998776544321 13455666776654321 0112345
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~- 314 (695)
+.+++..... ..+.....++++++|+|||||||.||||+++|+++++.+......+.+.++|++++..|++|.++...
T Consensus 186 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~ 264 (570)
T PRK04319 186 FNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYG 264 (570)
T ss_pred HHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHH
Confidence 6666544322 22233456789999999999999999999999999988877777788889999999999999998765
Q ss_pred HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
.+.+++.|+++++.. +++..+++.|+++++|+++++|++++.+.+......
T Consensus 265 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------- 317 (570)
T PRK04319 265 IFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV--------------------------- 317 (570)
T ss_pred HHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc---------------------------
Confidence 667899999998875 689999999999999999999999998865210000
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCccC
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAA 471 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~ 471 (695)
.....+++|.+++||+++++++.+++++.+|.++++.||+||+++.++..... ...++++|.|+|+
T Consensus 318 -------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g 384 (570)
T PRK04319 318 -------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPG 384 (570)
T ss_pred -------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCC
Confidence 00001589999999999999999999999999999999999998765544332 3457899999999
Q ss_pred cEEEEeecCCCCCCCCCCCCCcceEEEeC--CccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeee
Q 005468 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (695)
Q Consensus 472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (695)
++++|+| +++..++.|+ .|||+++| ++++.|||++++.|.+.| .+|||+|||+|+++++|+++++||+||+||
T Consensus 385 ~~~~i~d-~~~~~~~~g~---~Gel~i~~~~~~~~~GY~~~~~~~~~~~-~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~ 459 (570)
T PRK04319 385 IEAAIVD-DQGNELPPNR---MGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGYFWFQGRVDDVIK 459 (570)
T ss_pred CEEEEEC-CCCCCCCCCC---ceEEEEcCCCChHHhHhcCCHHHhhhhh-cCCceEeCcEEEECCCeeEEEEecCCCEEE
Confidence 9999999 4555556665 89999997 899999999999999999 489999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005468 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLAD 626 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 626 (695)
+ +|++|+|.+||+++.+||.|.+++|+|.++ ++.++|+|++.++. . .. +.+.++
T Consensus 460 ~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~----------~--------~~----~~~~~~ 516 (570)
T PRK04319 460 T-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGY----------E--------PS----EELKEE 516 (570)
T ss_pred E-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCC----------C--------CC----HHHHHH
Confidence 7 899999999999999999999999999654 46788889887631 0 01 233566
Q ss_pred HHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHH
Q 005468 627 MDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYF 674 (695)
Q Consensus 627 l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~ 674 (695)
|+++++ ++|+.|++|+.|++++++| +|++||++|++|+++.
T Consensus 517 l~~~~~-~~l~~~~~P~~i~~v~~iP------~t~~GKv~r~~L~~~~ 557 (570)
T PRK04319 517 IRGFVK-KGLGAHAAPREIEFKDKLP------KTRSGKIMRRVLKAWE 557 (570)
T ss_pred HHHHHH-HhcccccCCcEEEEeCCCC------CCCchhhhHHHHHHHH
Confidence 777775 7899999999999999999 9999999999998875
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=600.24 Aligned_cols=502 Identities=21% Similarity=0.292 Sum_probs=414.6
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.|+.++|.+.++.+|+++|+.+. +...+.++.+||+||.++++++|++|.+.|+++||+|+++++|+++|++++|||
T Consensus 24 ~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~ 100 (547)
T PRK13295 24 RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC 100 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence 58999999999999999999875 322334578999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccc-----hhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceE
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (695)
+++|++++|+++.++.+++.++++.+++++++++... .+.+.+.....+.++.++.++... .
T Consensus 101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 167 (547)
T PRK13295 101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG-------------A 167 (547)
T ss_pred HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC-------------c
Confidence 9999999999999999999999999999999998754 222333333445566666665421 1
Q ss_pred eeHHHHHhccc-----c--CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCCh
Q 005468 234 LTYSNLLSQGR-----S--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (695)
Q Consensus 234 ~~~~~~~~~~~-----~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl 306 (695)
.+|.++..... . .........++++++|+|||||||.||||+++|++++..+......+++.++|++++++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~ 247 (547)
T PRK13295 168 DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPM 247 (547)
T ss_pred cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCc
Confidence 23334332110 0 0111223467899999999999999999999999999888877777888999999999999
Q ss_pred hhHHHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 005468 307 AHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (695)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (695)
+|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.......
T Consensus 248 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-------------------- 307 (547)
T PRK13295 248 AHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES-------------------- 307 (547)
T ss_pred hhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc--------------------
Confidence 99999776 567899999999877 68999999999999999999999998876521100
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCCC
Q 005468 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLS 462 (695)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~ 462 (695)
....+++|.+++||+++++++.+++.+.+++++++.||+||++.+++..... ....
T Consensus 308 ----------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 365 (547)
T PRK13295 308 ----------------------GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERAS 365 (547)
T ss_pred ----------------------CCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhcc
Confidence 0011589999999999999999999998999999999999998765544322 2335
Q ss_pred CCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEe
Q 005468 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 463 ~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (695)
+++|.|+++++++|+| +++..++.|+ .|||+|+|++++.||+++|+.|.+. .+|||+|||+|+++++|++++.|
T Consensus 366 ~~~G~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~g 439 (547)
T PRK13295 366 TTDGCPLPGVEVRVVD-ADGAPLPAGQ---IGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISG 439 (547)
T ss_pred CccccccCCcEEEEEC-CCCCCCCCCC---CCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEEe
Confidence 6899999999999999 5566677776 8999999999999999999998876 57899999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRA 619 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (695)
|.||+||+ +|++|+|.+||++|.++++|.+++|++.++ ++.++++|+++++. ...
T Consensus 440 R~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~~------------- 497 (547)
T PRK13295 440 RSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQ--------SLD------------- 497 (547)
T ss_pred ccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCC--------CCC-------------
Confidence 99999996 899999999999999999999999999653 46789999987631 000
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 620 RAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 620 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.+++.+++++..|+.|++|..|++++++| +|++||++|++|++.+.+
T Consensus 498 ----~~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 498 ----FEEMVEFLKAQKVAKQYIPERLVVRDALP------RTPSGKIQKFRLREMLRG 544 (547)
T ss_pred ----HHHHHHHHHhccCccccCCcEEEEeccCC------CCCCccccHHHHHHHHhc
Confidence 24555566545899999999999999999 999999999999987754
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-68 Score=597.83 Aligned_cols=512 Identities=24% Similarity=0.330 Sum_probs=410.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
...|+.++|+..++++|+++|+... + +.+||+||.+++.++|++|.+ .|+++||+|+|+++|+++|++++
T Consensus 22 ~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~ 92 (562)
T PRK05677 22 EYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAV 92 (562)
T ss_pred ccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence 3458999999999999999999753 2 459999999999999999997 69999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCC--CC----------
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQ--IP---------- 223 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~--~~---------- 223 (695)
|||+++|++++|+++.++.+++.+++++++++++|++......+.+.... ..++.+++.+..+.. ..
T Consensus 93 la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK05677 93 FGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK-TGVKHVIVTEVADMLPPLKRLLINAVVKH 171 (562)
T ss_pred HHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc-cCcceeEEecccccccchhhhhcccchhh
Confidence 99999999999999999999999999999999999987765554443322 234444443211100 00
Q ss_pred --CCC-cCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcccc--ccC-CC
Q 005468 224 --SLP-ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT--KFY-PS 297 (695)
Q Consensus 224 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~-~~ 297 (695)
... .........+.+.+..+...........++++++|+|||||||.||||+++|+++...+......+ .+. ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 251 (562)
T PRK05677 172 VKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC 251 (562)
T ss_pred ccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCc
Confidence 000 000011234555554433222223345679999999999999999999999999987765444332 233 34
Q ss_pred cEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHH
Q 005468 298 DVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374 (695)
Q Consensus 298 d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~ 374 (695)
+++++.+|++|.+++.. .+..+..|++.++.+ .++..+++.|+++++|+++++|+++..+......
T Consensus 252 ~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----------- 320 (562)
T PRK05677 252 EILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAF----------- 320 (562)
T ss_pred cEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCccc-----------
Confidence 68899999999999875 455778888776665 5888999999999999999999999877652000
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccc
Q 005468 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQ 454 (695)
Q Consensus 375 ~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~ 454 (695)
+....+++|.+++||+++++++.+.|.+.+|+++++.||+||++++++.
T Consensus 321 -------------------------------~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 369 (562)
T PRK05677 321 -------------------------------RKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSV 369 (562)
T ss_pred -------------------------------ccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceee
Confidence 0000148999999999999999999999889999999999999877665
Q ss_pred cCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEec
Q 005468 455 LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534 (695)
Q Consensus 455 ~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~ 534 (695)
.......++++|.|+++++++|+| +++..++.|+ .|||+|+|+.++.|||++++.|.+.|+.+|||+|||+|++|+
T Consensus 370 ~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~ 445 (562)
T PRK05677 370 NPSQAIQVGTIGIPVPSTLCKVID-DDGNELPLGE---VGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE 445 (562)
T ss_pred cCccCCCCCccCccCCCCEEEEEC-CCCCCCCCCC---CeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECC
Confidence 554445678999999999999999 5567777776 899999999999999999999999998899999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHH
Q 005468 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLE 611 (695)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~ 611 (695)
+|.++|.||+||+||+ +|++|+|.+||++|.+||+|.+++|+|.++ ++.++++|++.+.. +.+
T Consensus 446 ~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~--------~~~----- 511 (562)
T PRK05677 446 DGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGE--------TLT----- 511 (562)
T ss_pred CCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCC--------CCC-----
Confidence 9999999999999997 799999999999999999999999999664 45778888876421 111
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 612 QLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 612 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.++|+++++ .+|++|++|..|++++++| +|++||++|++|++.+.++
T Consensus 512 ------------~~~l~~~~~-~~l~~~~~P~~i~~v~~iP------~t~sGKi~r~~L~~~~~~~ 558 (562)
T PRK05677 512 ------------KEQVMEHMR-ANLTGYKVPKAVEFRDELP------TTNVGKILRRELRDEELKK 558 (562)
T ss_pred ------------HHHHHHHHH-HhhhhccCCcEEEEeccCC------CCCcccccHHHHHHHHHHh
Confidence 345555665 6799999999999999999 9999999999999877654
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-68 Score=598.84 Aligned_cols=498 Identities=24% Similarity=0.287 Sum_probs=400.3
Q ss_pred HHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHHHH
Q 005468 81 THDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACS 159 (695)
Q Consensus 81 l~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (695)
+..+|.+ +.+|+++|+.+. ++. ..+||+||.+++.++|++|.+ .|+++||+|+|+++|+++|++++|||+
T Consensus 43 ~~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~ 113 (560)
T PLN02574 43 VSFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVL 113 (560)
T ss_pred HHHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHH
Confidence 3444544 679999998753 221 258999999999999999999 999999999999999999999999999
Q ss_pred hcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHH
Q 005468 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (695)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (695)
++|++++|+++.++.+++.++++.++++++|++.+....+... ... ++.++..... . ........|.++
T Consensus 114 ~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~-~----~~~~~~~~~~~~ 182 (560)
T PLN02574 114 SLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GVP-VIGVPENYDF-D----SKRIEFPKFYEL 182 (560)
T ss_pred HhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CCc-EEecCccccc-c----cCccCcccHHHH
Confidence 9999999999999999999999999999999998766555432 111 2222211000 0 000112345555
Q ss_pred HhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc----ccc-cCCCcEEEEeCChhhHHHHHH
Q 005468 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTK-FYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~-~~~~d~~l~~~pl~h~~~~~~ 314 (695)
...... ..+.....++++++|+|||||||.||||++||+++.+.+..+.. ... ....++++..+|++|.+++..
T Consensus 183 ~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~ 261 (560)
T PLN02574 183 IKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSL 261 (560)
T ss_pred hhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHH
Confidence 544322 11223346789999999999999999999999999887765432 122 235688999999999999877
Q ss_pred H-HHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 315 Q-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 315 ~-~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
. +.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+.....
T Consensus 262 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------- 313 (560)
T PLN02574 262 FVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV---------------------------- 313 (560)
T ss_pred HHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc----------------------------
Confidence 4 45678899998877 79999999999999999999999999886531100
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCC--CCCCCCCcCCCc
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE--GDNLSGHVGSPN 469 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~ 469 (695)
.....+++|.+++||+++++++.+.+.+.+ ++.+++.||+||++.+++.... .....+++|.|+
T Consensus 314 -------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~ 380 (560)
T PLN02574 314 -------------CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLA 380 (560)
T ss_pred -------------ccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeC
Confidence 000115899999999999999999999888 6899999999999865543222 224568899999
Q ss_pred cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeee
Q 005468 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (695)
Q Consensus 470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (695)
++++++|+|++++..++.|+ .|||||+|++++.|||++++.|.+.|+.+|||+|||+|++|+||+++|+||+||+||
T Consensus 381 ~~~~v~i~d~~~g~~~~~g~---~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~ 457 (560)
T PLN02574 381 PNMQAKVVDWSTGCLLPPGN---CGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIK 457 (560)
T ss_pred CCcEEEEEeCCCCcCCCCCC---CeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheE
Confidence 99999999977777777776 899999999999999999999999998899999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005468 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLAD 626 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 626 (695)
+ +|++|+|.+||++|.+||.|.+++|+|.++ ++.++++|+++++. .+. .++
T Consensus 458 ~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~~-----------------~~~ 511 (560)
T PLN02574 458 Y-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS--------TLS-----------------QEA 511 (560)
T ss_pred E-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCC--------CCC-----------------HHH
Confidence 7 899999999999999999999999999654 46788999877531 111 245
Q ss_pred HHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 627 MDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 627 l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
|.++++ ++|+.|++|+.|.+++++| +|++||++|+.|++.+.+
T Consensus 512 l~~~~~-~~l~~~~~p~~v~~v~~iP------~t~~GKi~r~~L~~~~~~ 554 (560)
T PLN02574 512 VINYVA-KQVAPYKKVRKVVFVQSIP------KSPAGKILRRELKRSLTN 554 (560)
T ss_pred HHHHHH-HhccCcccCcEEEEeeccC------CCCcchhhHHHHHHHHhh
Confidence 566665 6799999999999999999 999999999999988754
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=604.77 Aligned_cols=512 Identities=20% Similarity=0.199 Sum_probs=397.0
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.|+.+.+.. +.++++|+.+. +. .+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||
T Consensus 87 ~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~ 159 (652)
T TIGR01217 87 LNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLAT 159 (652)
T ss_pred eeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 345555443 35789999875 32 234577999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccc---------hhHHHhcccCCCCceEEEEECCCCCCCCCCCcCC
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~ 229 (695)
+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.++...++.++.+++++.......... .
T Consensus 160 ~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~ 237 (652)
T TIGR01217 160 ASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAP--K 237 (652)
T ss_pred HHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccc--c
Confidence 9999999999999999999999999999999998653 3444444445666777777653221100000 0
Q ss_pred CceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHH-HHHhhccccccCCCcEEEEeCChhh
Q 005468 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA-SVAGATLGTKFYPSDVYISYLPLAH 308 (695)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~h 308 (695)
......|+++...............++++++|+|||||||.||||+++|++++. ........+++.++|++++++|+.|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 317 (652)
T TIGR01217 238 IDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGW 317 (652)
T ss_pred ccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcch
Confidence 012346777765422211222345678999999999999999999999999654 4444444578889999999999999
Q ss_pred HHHHHHHHHHHHcCcEEeEecC-----ChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 005468 309 IYERANQVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (695)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~~-----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k 383 (695)
++.. ..+.+|+.|++++++++ ++..+++.++++++|++..+|.++..+...
T Consensus 318 ~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~----------------------- 373 (652)
T TIGR01217 318 MMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA----------------------- 373 (652)
T ss_pred hhhH-HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc-----------------------
Confidence 8642 34578999999999862 678899999999999998877776555321
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC--CccccccccccccccccccCC-CCC
Q 005468 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG--GRVTEGYGMTETSCLISQLDE-GDN 460 (695)
Q Consensus 384 ~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g--~~v~~~YG~TE~~~~~~~~~~-~~~ 460 (695)
+..+...++ .++||.+++||+++++++.+++.+.++ ..+.+.||+||+++......+ ...
T Consensus 374 ------~~~~~~~~~-----------l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~ 436 (652)
T TIGR01217 374 ------GVHPARTHD-----------LSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPV 436 (652)
T ss_pred ------CCCccccCC-----------hhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCC
Confidence 000000001 158999999999999999999998886 356789999997543332222 224
Q ss_pred CCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCC--ccchhccCChhhhh---cccC-CCCeeecccEEEEec
Q 005468 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTK---EVID-EDGWFHTGDIGMWIP 534 (695)
Q Consensus 461 ~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~--~v~~gY~~~~~~t~---~~~~-~~gw~~TGDlg~~~~ 534 (695)
..+++|.|.+|++++|+| ++++.+ .|+ .|||+++|| +++.|||++++.|+ ..|. .+|||+|||+|++|+
T Consensus 437 ~~g~~g~p~~g~~v~ivd-~~g~~~-~g~---~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~ 511 (652)
T TIGR01217 437 HIGEIQAPGLGTAVQSWD-PEGKPV-TGE---VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTP 511 (652)
T ss_pred cCCccCCCcCCCceEEEC-CCCCCC-CCC---ccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECC
Confidence 568899999999999999 455544 354 899999996 68999999998664 2232 278999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHH
Q 005468 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLE 611 (695)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~ 611 (695)
||+|+|+||.||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ ++.++|+|++.++. .
T Consensus 512 dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~----------~----- 575 (652)
T TIGR01217 512 RGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGA----------T----- 575 (652)
T ss_pred CCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCC----------C-----
Confidence 9999999999999995 999999999999999999999999999754 46899999987631 0
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 612 QLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 612 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
.+ +.+.++|+++++ .+|+.|++|+.|++++++| +|++|||+|+.|++.+.
T Consensus 576 ---~~----~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~r~~Lr~~~~ 625 (652)
T TIGR01217 576 ---LD----DALLDRIKRTIR-AGLSPRHVPDEIIEVPGIP------HTLTGKRVEVAVKRVLQ 625 (652)
T ss_pred ---CC----HHHHHHHHHHHH-hhCCCCcCCCEEEECCCCC------CCCCccChHHHHHHHHc
Confidence 01 233567777776 7899999999999999999 99999999999998874
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-68 Score=606.61 Aligned_cols=513 Identities=18% Similarity=0.190 Sum_probs=402.5
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.|+.+.+.++ .+|+++|+.+. +. .+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||
T Consensus 86 ~n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~ 159 (655)
T PRK03584 86 LNYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLAT 159 (655)
T ss_pred eeHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3555555442 58999999875 32 344678999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccc---------hhHHHhcccCCCCceEEEEECCCCCCCCCCCcCC
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~ 229 (695)
+++|++++|+++.++.+++.+++++++++++|+++.. ...+......++.++.++.++....... ...
T Consensus 160 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~ 236 (655)
T PRK03584 160 ASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAA---AAA 236 (655)
T ss_pred HHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCccc---ccc
Confidence 9999999999999999999999999999999998643 2333333344556666666653221000 001
Q ss_pred CceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHH-HHhhccccccCCCcEEEEeCChhh
Q 005468 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVYISYLPLAH 308 (695)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~pl~h 308 (695)
......|++++..............++++++|+|||||||.||||++||++++.. +......+++.++|+++++.++.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 316 (655)
T PRK03584 237 LPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGW 316 (655)
T ss_pred cCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchH
Confidence 1123467777652222222234456799999999999999999999999987643 444455578889999999999998
Q ss_pred HHHHHHHHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 005468 309 IYERANQVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (695)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k 383 (695)
++.. ..+.+|+.|+++++++ .++..+++.++++++|++.++|+++..+.+...
T Consensus 317 ~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------------------- 374 (655)
T PRK03584 317 MMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL--------------------- 374 (655)
T ss_pred HhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------------------
Confidence 7653 3567899999999975 378899999999999999999999987754100
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh--CCccccccccccccccccccCC-CCC
Q 005468 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDE-GDN 460 (695)
Q Consensus 384 ~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~-~~~ 460 (695)
.+...+ ..++||.+++||+++++++.+++.+.+ ++.+.+.||+||+++......+ ...
T Consensus 375 --------~~~~~~-----------~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~ 435 (655)
T PRK03584 375 --------VPGETH-----------DLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPV 435 (655)
T ss_pred --------CccccC-----------ChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCc
Confidence 000000 115899999999999999999999988 4789999999998654433222 234
Q ss_pred CCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCC--ccchhccCChhhhh--cc-cC-CCCeeecccEEEEec
Q 005468 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTK--EV-ID-EDGWFHTGDIGMWIP 534 (695)
Q Consensus 461 ~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~--~v~~gY~~~~~~t~--~~-~~-~~gw~~TGDlg~~~~ 534 (695)
..+++|.|++|++++|+| +++..+ .|+ .|||+|+|+ +++.|||++++.++ +. |. .+|||+|||+|++|+
T Consensus 436 ~~g~~g~p~~g~~~~ivd-~~g~~~-~g~---~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~ 510 (655)
T PRK03584 436 YRGEIQCRGLGMAVEAWD-EDGRPV-VGE---VGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITE 510 (655)
T ss_pred CCCccCCCcCCceeEEEC-CCCCCC-CCC---ceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECC
Confidence 568899999999999999 555554 454 899999996 79999999998654 22 21 268999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHH
Q 005468 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLE 611 (695)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~ 611 (695)
||+++|+||.||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ ++.++|+|++.++. .
T Consensus 511 dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~----------~----- 574 (655)
T PRK03584 511 HGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGV----------T----- 574 (655)
T ss_pred CCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCC----------C-----
Confidence 9999999999999996 899999999999999999999999999654 46899999987631 0
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 612 QLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 612 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.+ +.+.++|+++++ .+|+.|++|..|++++++| +|++|||+|+.|++.+..
T Consensus 575 ---~~----~~~~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~t~sGKi~r~~lr~~~~~ 625 (655)
T PRK03584 575 ---LD----DALRARIRTTIR-TNLSPRHVPDKIIAVPDIP------RTLSGKKVELPVKKLLHG 625 (655)
T ss_pred ---Cc----HHHHHHHHHHHH-hhCCCCcCCCEEEECCCCC------CCCCccchHHHHHHHHcC
Confidence 01 233556777776 7899999999999999999 999999999999988753
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-68 Score=605.15 Aligned_cols=524 Identities=16% Similarity=0.173 Sum_probs=411.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..+...++|.++++.+||++|+.+. +...+..+.+||+||.+++.++|++|.+.|+++||+|+++++|+++++++++
T Consensus 51 ~~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 127 (629)
T PRK10524 51 RTNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAML 127 (629)
T ss_pred EeeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3455688898888899999999875 3222345779999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccc---------hhHHHhcccCC-CCceEEEEECCCCCCCCCCC
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEV-PTVRLIVVIGGIDDQIPSLP 226 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~~~~~~~~~-~~l~~ii~~~~~~~~~~~~~ 226 (695)
||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.++.... +....+++++.......
T Consensus 128 A~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--- 204 (629)
T PRK10524 128 ACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMA--- 204 (629)
T ss_pred HHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC---
Confidence 999999999999999999999999999999999997642 22232222221 23445666553211100
Q ss_pred cCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHH-hhccccccCCCcEEEEeCC
Q 005468 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISYLP 305 (695)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p 305 (695)
........+.++.........+.....++++++|+|||||||.||||+++|++++.... .....+++.++|++++.+|
T Consensus 205 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 283 (629)
T PRK10524 205 -RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASD 283 (629)
T ss_pred -cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCC
Confidence 00111234666544322211222334678999999999999999999999999765443 3334467889999999999
Q ss_pred hhhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 005468 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (695)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (695)
+.|.++... .+.+++.|++++++. .++..+++.|+++++|++.++|++++.+.+.....
T Consensus 284 ~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------- 348 (629)
T PRK10524 284 IGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL--------------- 348 (629)
T ss_pred CCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc---------------
Confidence 999988755 567899999999876 36788999999999999999999998775420000
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-
Q 005468 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG- 458 (695)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~- 458 (695)
.+....++||.+++||+++++++.+++.+.+++++++.||+||++..+......
T Consensus 349 -------------------------~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~ 403 (629)
T PRK10524 349 -------------------------LRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGV 403 (629)
T ss_pred -------------------------ccccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCc
Confidence 000011589999999999999999999999999999999999998433322221
Q ss_pred ---CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCC---ccchhccCChhhhhccc---CCCCeeecccE
Q 005468 459 ---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVI---DEDGWFHTGDI 529 (695)
Q Consensus 459 ---~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~---~v~~gY~~~~~~t~~~~---~~~gw~~TGDl 529 (695)
....+++|.|+++++++|+|.+++..++.|+ .|||+|+|| +++.|||++++.+.+.+ ..+|||+|||+
T Consensus 404 ~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~---~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl 480 (629)
T PRK10524 404 EDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNE---KGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDW 480 (629)
T ss_pred ccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCC---cEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCc
Confidence 2456899999999999999954777777776 899999998 57899999998876654 14689999999
Q ss_pred EEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCC
Q 005468 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQ 606 (695)
Q Consensus 530 g~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~ 606 (695)
|++|+||+++|+||.||+||+ +|++|+|.+||++|.+||+|.+|+|+|.++ ++.++++|++.++.. .
T Consensus 481 ~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~--------~- 550 (629)
T PRK10524 481 GIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDS--------L- 550 (629)
T ss_pred EEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCc--------c-
Confidence 999999999999999999997 799999999999999999999999999764 367899999876320 0
Q ss_pred cccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 607 YENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 607 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
.+.+..+.+.++|+++++ ++|+.|++|..|++++++| +|++||++|+.|++.+.
T Consensus 551 --------~~~~~~~~~~~~i~~~~~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~ 604 (629)
T PRK10524 551 --------ADREARLALEKEIMALVD-SQLGAVARPARVWFVSALP------KTRSGKLLRRAIQAIAE 604 (629)
T ss_pred --------ccccchHHHHHHHHHHHH-hhcCCCcCCCEEEEcCCCC------CCCCcchHHHHHHHHHc
Confidence 111122345667777776 7899999999999999999 99999999999998764
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=590.25 Aligned_cols=501 Identities=26% Similarity=0.338 Sum_probs=415.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
++..|+.+++.++++++|+++|+.+. +. .+++||.||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~a~~~~---~~----~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~ 92 (537)
T PLN02246 20 PNHLPLHDYCFERLSEFSDRPCLIDG---AT----GRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAF 92 (537)
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEec---CC----CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence 45678999999999999999999753 21 146999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
+||+++|++++|+++.++.+++..+++.++++++|++......+...... ..+ .++.+++.. .....
T Consensus 93 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~-~~i~~~~~~-----------~~~~~ 159 (537)
T PLN02246 93 LGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGV-TVVTIDDPP-----------EGCLH 159 (537)
T ss_pred HHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCc-eEEEeCCCC-----------CCcee
Confidence 99999999999999999999999999999999999998776665544321 222 344444321 01244
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc----ccccCCCcEEEEeCChhhHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~ 311 (695)
+.++...... ..+.....++++++++|||||||.||||+++|++++..+..... .+.+.++|++++.+|++|.++
T Consensus 160 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~ 238 (537)
T PLN02246 160 FSELTQADEN-ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS 238 (537)
T ss_pred HHHHhcCCCC-CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHH
Confidence 5555433211 12233456789999999999999999999999999887765432 467889999999999999999
Q ss_pred HHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Q 005468 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (695)
Q Consensus 312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (695)
+.. .+.++..|+++++.+ .++..+++.|+++++|++.++|+++..|.+....
T Consensus 239 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-------------------------- 292 (537)
T PLN02246 239 LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV-------------------------- 292 (537)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc--------------------------
Confidence 876 456799999999988 6899999999999999999999999887642100
Q ss_pred CCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccC-----CCCCCCC
Q 005468 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLD-----EGDNLSG 463 (695)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~-----~~~~~~~ 463 (695)
.....+++|.+++||+++++++.+++.+.+ ++.+++.||+||++.+++... ......+
T Consensus 293 ----------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 356 (537)
T PLN02246 293 ----------------EKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSG 356 (537)
T ss_pred ----------------cccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCC
Confidence 000014899999999999999999999988 678999999999986554321 1124567
Q ss_pred CcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEec
Q 005468 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (695)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (695)
++|+|+++++++|+|++++..++.|. .|||+++|++++.|||++++.+.+.|+.+|||+|||+|+++++|++++.||
T Consensus 357 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR 433 (537)
T PLN02246 357 SCGTVVRNAELKIVDPETGASLPRNQ---PGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDR 433 (537)
T ss_pred ccccccCCcEEEEecCCCCCcCCCCC---ceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEec
Confidence 89999999999999976777777776 899999999999999999999999998899999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005468 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRAR 620 (695)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (695)
.||+||+ +|++|+|.+||+.+.+||+|.+++|++.++ ++.++++|++.++. ..
T Consensus 434 ~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~--------------- 489 (537)
T PLN02246 434 LKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGS--------EI--------------- 489 (537)
T ss_pred ccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCC--------CC---------------
Confidence 9999997 899999999999999999999999999653 35788888877531 01
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 621 AAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 621 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
..++|+++++ .+|+.|++|+.|++++++| +|++||++|++|++++.
T Consensus 490 --~~~~l~~~l~-~~l~~~~~p~~i~~~~~~P------~t~~GKi~r~~L~~~~~ 535 (537)
T PLN02246 490 --TEDEIKQFVA-KQVVFYKRIHKVFFVDSIP------KAPSGKILRKDLRAKLA 535 (537)
T ss_pred --CHHHHHHHHH-hhCcCccccceEEEeccCC------CCCcchhhHHHHHHHHh
Confidence 1345666665 6899999999999999999 99999999999998864
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-68 Score=594.85 Aligned_cols=503 Identities=21% Similarity=0.294 Sum_probs=395.5
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCc----cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGT----VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~----~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
.|+.++|.+.++++||++|+.+. ++. ...++++||+||.+++.++|++|.+.|+++||+|+++++|+++|+++
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~ 82 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL 82 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence 57889999999999999999874 321 12245799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEeccc--chhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCce
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ--TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~--~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
++||+++|++++|+++.++.+++.+++++++++++|++.. ....+.... ....+.++.++... ...
T Consensus 83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~----------~~~ 150 (552)
T PRK09274 83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG--KPSVRRLVTVGGRL----------LWG 150 (552)
T ss_pred HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC--ccchhheecccccc----------ccC
Confidence 9999999999999999999999999999999999998752 222221111 12233344333210 001
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHH
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (695)
...+.++...............++++++|+|||||||.||||++||+++...+......+++.++|+.++.+|++|.+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 230 (552)
T PRK09274 151 GTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP 230 (552)
T ss_pred CccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh
Confidence 12344443221111222334567899999999999999999999999999988877777888999999999999886543
Q ss_pred HHHHHHHHcCcEEeEec--------CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 005468 313 ANQVMTVYSGVAVGFYQ--------GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (695)
Q Consensus 313 ~~~~~~l~~G~~~~~~~--------~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (695)
..|+++++.. .++..+++.|+++++|+++++|+++..+.+.....
T Consensus 231 -------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------------- 283 (552)
T PRK09274 231 -------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN-------------------- 283 (552)
T ss_pred -------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc--------------------
Confidence 4577776643 47889999999999999999999999987632110
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh--CCccccccccccccccccccCCC----
Q 005468 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDEG---- 458 (695)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~---- 458 (695)
....+++|.+++||+++++++.+++.+.+ |+++++.||+||++++++.....
T Consensus 284 ----------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~ 341 (552)
T PRK09274 284 ----------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFA 341 (552)
T ss_pred ----------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhcc
Confidence 00115899999999999999999999998 46999999999998765543221
Q ss_pred ------CCCCCCcCCCccCcEEEEeecC--------CCCCCCCCCCCCcceEEEeCCccchhccCChhhhhccc--CCCC
Q 005468 459 ------DNLSGHVGSPNAACEIKLVDVP--------EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI--DEDG 522 (695)
Q Consensus 459 ------~~~~~~vG~p~~~~~v~i~d~~--------~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~--~~~g 522 (695)
.....++|+|+|+++++|+|.. ++..++.|+ .|||+|+|++++.|||++++.|...| +.+|
T Consensus 342 ~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g 418 (552)
T PRK09274 342 TRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGE---IGEIVVAGPMVTRSYYNRPEATRLAKIPDGQG 418 (552)
T ss_pred ccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCC---eeEEEEecCcccccccCChHHhhhhhcccCCC
Confidence 1123479999999999999853 234455555 89999999999999999999998876 4466
Q ss_pred --eeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEEeCHHHHHH
Q 005468 523 --WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVDQDALKA 598 (695)
Q Consensus 523 --w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~~~~~~ 598 (695)
||+|||+|++|+||+|+++||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.++ .+.++++|++.++..
T Consensus 419 ~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~~~~-- 495 (552)
T PRK09274 419 DVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEPGVA-- 495 (552)
T ss_pred CcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccCccc--
Confidence 9999999999999999999999999997 899999999999999999999999999654 346888888876320
Q ss_pred HHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccC--ccccCChHHHHHHHHH
Q 005468 599 WAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLT--PTFKIKRPQAKQYFAK 676 (695)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t--~~gKi~R~~l~~~~~~ 676 (695)
... +.+.+++++++. .++.++.|+.+.+++++| +| ++|||+|++|++++.+
T Consensus 496 ---------------~~~----~~l~~~l~~~l~--~~~~~~~~~~~~~~~~lP------~t~~~~GKi~r~~L~~~~~~ 548 (552)
T PRK09274 496 ---------------CSK----SALYQELRALAA--AHPHTAGIERFLIHPSFP------VDIRHNAKIFREKLAVWAAK 548 (552)
T ss_pred ---------------cch----HHHhhhhHHHHH--hcCCCcceeEEeccCCCC------ccccccccccHHHHHHHHHH
Confidence 011 123445555543 345678889999999999 98 7999999999999887
Q ss_pred HH
Q 005468 677 AI 678 (695)
Q Consensus 677 ~i 678 (695)
.+
T Consensus 549 ~~ 550 (552)
T PRK09274 549 QL 550 (552)
T ss_pred hh
Confidence 64
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=592.50 Aligned_cols=511 Identities=21% Similarity=0.311 Sum_probs=421.4
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChhHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..|+.++|.+.++++|+++|+.+. + +.+||+||.+++.++|++|.+. |+++||+|+|+++|+++|+++++
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 79 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYY 79 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHH
Confidence 468999999999999999999864 3 3599999999999999999999 99999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCC--C-----CCCC----
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD--Q-----IPSL---- 225 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~--~-----~~~~---- 225 (695)
||+++|++++|+++.++.+++.+++++++++++|++......+......+ .++.+++.+.... . ...+
T Consensus 80 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (546)
T PRK08314 80 AILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWLRAE 158 (546)
T ss_pred HHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhcccccccCcccccccc
Confidence 99999999999999999999999999999999999988776665543332 2344444321100 0 0000
Q ss_pred ---CcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEE
Q 005468 226 ---PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302 (695)
Q Consensus 226 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~ 302 (695)
....+.....|++....... .......++++++|+|||||||.||||++||++++..+......+.+..+|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~ 236 (546)
T PRK08314 159 PPLQALAPGGVVAWKEALAAGLA--PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLA 236 (546)
T ss_pred cccccccccccccHHHHhcccCC--CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEE
Confidence 00011233456666543221 2233456789999999999999999999999999998887777788899999999
Q ss_pred eCChhhHHHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 005468 303 YLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (695)
Q Consensus 303 ~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (695)
.+|++|.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|.++..+.....
T Consensus 237 ~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~------------------ 298 (546)
T PRK08314 237 VLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG------------------ 298 (546)
T ss_pred EcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC------------------
Confidence 999999999876 557899999999987 689999999999999999999999987764200
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCC
Q 005468 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN 460 (695)
Q Consensus 381 ~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~ 460 (695)
.. ....+++|.+++||+++++++.+++.+.+++++++.||+||++..+........
T Consensus 299 ----------------~~--------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 354 (546)
T PRK08314 299 ----------------LA--------ERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRP 354 (546)
T ss_pred ----------------cc--------ccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCC
Confidence 00 000147999999999999999999999899999999999999876665544445
Q ss_pred CCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC---CCCeeecccEEEEecCCc
Q 005468 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID---EDGWFHTGDIGMWIPGGR 537 (695)
Q Consensus 461 ~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~---~~gw~~TGDlg~~~~dG~ 537 (695)
..+++|.|+++++++|+|++++..++.|. .|||+|+|++++.||+++++.|++.|. .++||+|||+|+++++|.
T Consensus 355 ~~~~~G~~~~g~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~ 431 (546)
T PRK08314 355 KLQCLGIPTFGVDARVIDPETLEELPPGE---VGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGY 431 (546)
T ss_pred CCCccCcccCCeEEEEEeCCCCcCCCCCC---ceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCc
Confidence 56889999999999999977778777776 899999999999999999999988873 346999999999999999
Q ss_pred EEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhh
Q 005468 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLC 614 (695)
Q Consensus 538 l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~ 614 (695)
+++.||+||+||+ +|++|+|.+||+++.++|+|.+++|++.++ ++.++|+|+++++... .+
T Consensus 432 l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~------~~--------- 495 (546)
T PRK08314 432 FFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARG------KT--------- 495 (546)
T ss_pred EEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCC------CC---------
Confidence 9999999999997 899999999999999999999999999654 4678999998864200 00
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 615 NDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 615 ~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
..++|+++++ ++|+.|++|..|++++++| +|++||++|++|++..+.
T Consensus 496 --------~~~~l~~~~~-~~l~~~~~P~~~~~v~~iP------~t~~GKv~r~~L~~~~~~ 542 (546)
T PRK08314 496 --------TEEEIIAWAR-EHMAAYKYPRIVEFVDSLP------KSGSGKILWRQLQEQEKA 542 (546)
T ss_pred --------CHHHHHHHHH-HhcccCCCCcEEEEecCCC------CCCccceeHHHHHHHHhh
Confidence 0345667775 7899999999999999999 999999999999876554
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-68 Score=593.20 Aligned_cols=508 Identities=19% Similarity=0.226 Sum_probs=396.5
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
-..|+.+.|.+.++++|+++|+.+. ++. +.+||+||.+++.++|++|.+.|+++|++|+|+++|+++|++++|
T Consensus 12 ~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~l 84 (540)
T PRK05857 12 LPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVL 84 (540)
T ss_pred CCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHH
Confidence 3458999999999999999999764 442 459999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|++++|+++.++.+++.++++.++++++|++................+. ++.++..... . . +
T Consensus 85 A~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~----------~-~ 151 (540)
T PRK05857 85 ACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAVT-R----------E-S 151 (540)
T ss_pred HHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeeccccc-c----------c-c
Confidence 999999999999999999999999999999999998765322111111111222 2222221100 0 0 0
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc----ccccCCCcEEEEeCChhhHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYER 312 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~~ 312 (695)
...... ..........++++++++|||||||.||||++||+++.++...... .+.+..+++.++.+|++|.+++
T Consensus 152 ~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l 229 (540)
T PRK05857 152 EHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGL 229 (540)
T ss_pred cccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchH
Confidence 000000 0011122346789999999999999999999999999876543321 2355678899999999999999
Q ss_pred HHHHHHHHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 313 ~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
...+.+++.|+++++.+.++..+++.|+++++|+++++|+++..+.+.....
T Consensus 230 ~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~---------------------------- 281 (540)
T PRK05857 230 WWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA---------------------------- 281 (540)
T ss_pred HHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccC----------------------------
Confidence 8888889999998876678999999999999999999999999886531100
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----CCCCCcCC
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (695)
....+++|.+++||++++....+++ ..+|+++++.||+||++.......... ...+++|+
T Consensus 282 --------------~~~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 346 (540)
T PRK05857 282 --------------NATVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR 346 (540)
T ss_pred --------------CCcCccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeecccccccccccccCCcCc
Confidence 0011589999999999998887654 467999999999999975443322221 24578999
Q ss_pred CccCcEEEEeecCCCCCCCCC--CCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCC
Q 005468 468 PNAACEIKLVDVPEMNYTSED--QPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~--~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (695)
|++|++++|+|.++....+.+ ..++.|||+|+|++++.|||++++.|.+.| .+|||+|||+|++|++|++++.||.|
T Consensus 347 ~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~ 425 (540)
T PRK05857 347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSS 425 (540)
T ss_pred ccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEecccc
Confidence 999999999985433333221 112489999999999999999999999999 68999999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005468 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAA 622 (695)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (695)
|+||+ +|++|+|.+||+++..||+|.+|+|++.++ ++.++++|++.+.. +....+.
T Consensus 426 ~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~--------------------~~~~~~~ 484 (540)
T PRK05857 426 EMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAEL--------------------DESAARA 484 (540)
T ss_pred ccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCC--------------------ChhhHHH
Confidence 99996 899999999999999999999999999764 34566677665421 1111233
Q ss_pred HHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHH
Q 005468 623 VLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAI 678 (695)
Q Consensus 623 i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i 678 (695)
+.+.+.+.++ +.++.|++|..|++++++| +|++||++|++|++.++++-
T Consensus 485 l~~~~~~~~~-~~l~~~~~P~~v~~~~~iP------~t~~GKi~r~~l~~~~~~~~ 533 (540)
T PRK05857 485 LKHTIAARFR-RESEPMARPSTIVIVTDIP------RTQSGKVMRASLAAAATADK 533 (540)
T ss_pred HHHHHHHHHH-hhhccccCCeEEEEhhcCC------CCCCcceeHHHHHHhhhhcc
Confidence 4555666665 6799999999999999999 99999999999999888653
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-68 Score=591.56 Aligned_cols=489 Identities=21% Similarity=0.254 Sum_probs=403.7
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.++.++|.+.++++||++|+... + +.+||+||.++++++|++|.++|+++|++|+|+++|+++|+++++||
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 113 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA 113 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence 57999999999999999999753 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (695)
+++|++++|+++.++.+++.+++++++++++|++......+.......+....++.+++.. ....++.
T Consensus 114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 181 (537)
T PRK13382 114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED------------HDLTVEV 181 (537)
T ss_pred HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc------------ccccHHH
Confidence 9999999999999999999999999999999999877665554433333333333332211 0123444
Q ss_pred HHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHH
Q 005468 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (695)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 318 (695)
+...... ......+++.++++|||||||.||||+++|++++.........+.+..++++++.+|++|.+++...+.+
T Consensus 182 ~~~~~~~---~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 258 (537)
T PRK13382 182 LIAAHAG---QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLA 258 (537)
T ss_pred HhhccCc---CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHH
Confidence 4432211 1112346889999999999999999999999998887777666778899999999999999999778888
Q ss_pred HHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 005468 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (695)
Q Consensus 319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (695)
+..|+++++.. +++..+++.|+++++|++.++|+++..+.+......
T Consensus 259 l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------- 306 (537)
T PRK13382 259 ASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR-------------------------------- 306 (537)
T ss_pred HhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhc--------------------------------
Confidence 99999988866 789999999999999999999999998865211000
Q ss_pred HHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCccCcEEEE
Q 005468 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKL 476 (695)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i 476 (695)
....+.++|.+++||+++++++.+.|.+.+|.+++++||+||++.+++..... ....+++|+|+++++++|
T Consensus 307 --------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i 378 (537)
T PRK13382 307 --------NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRI 378 (537)
T ss_pred --------ccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEE
Confidence 00011479999999999999999999999999999999999998766543322 245679999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeee
Q 005468 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (695)
Q Consensus 477 ~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v 556 (695)
+| +++..++.|. .|||+++|++++.||+ ++.+.. + .+|||+|||++++|+||+++|.||+||+||. +|++|
T Consensus 379 ~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~-~G~~v 449 (537)
T PRK13382 379 LD-QDFREVPTGE---VGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDENGRLFVVGRDDEMIVS-GGENV 449 (537)
T ss_pred EC-CCCCCCCCCC---eeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeCCCcEEEeccccceeEE-CCEEE
Confidence 99 5667777776 8999999999999998 555544 4 4799999999999999999999999999996 89999
Q ss_pred chHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHh
Q 005468 557 AAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGRE 633 (695)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 633 (695)
+|.+||+++.+||+|.+++|++.++ ++.++++|+++++. . ...++|+++++
T Consensus 450 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~--------~-----------------~~~~~l~~~l~- 503 (537)
T PRK13382 450 YPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGA--------S-----------------ATPETLKQHVR- 503 (537)
T ss_pred CHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCC--------C-----------------CCHHHHHHHHH-
Confidence 9999999999999999999999764 45789999987631 0 11345666665
Q ss_pred cCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 634 AQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 634 ~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
.+|+.|++|..+.+++++| +|++||++|++|++
T Consensus 504 ~~l~~~~~P~~i~~v~~lP------~t~~gK~~r~~L~~ 536 (537)
T PRK13382 504 DNLANYKVPRDIVVLDELP------RGATGKILRRELQA 536 (537)
T ss_pred HhccCCCCCcEEEEeccCC------CCCCCCCcHHhhCC
Confidence 6899999999999999999 99999999999864
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=601.65 Aligned_cols=504 Identities=19% Similarity=0.224 Sum_probs=391.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|+++++++||++|+.+....+...+.++++||+||.+++.++|++|.+. +++||+|+|+++|+++|++++|
T Consensus 19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l 97 (631)
T PRK07769 19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF 97 (631)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence 457899999999999999999986411011123457899999999999999999987 8999999999999999999999
Q ss_pred HHHhcCCeEEecc-CCCC--HHHHHHHHHhccccEEEecccchhHHHhcccCCCC--ceEEEEECCCCCCCCCCCcCCCc
Q 005468 157 ACSAYSFISVPLY-DTLG--PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPITTGV 231 (695)
Q Consensus 157 A~~~~G~v~vpl~-~~~~--~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--l~~ii~~~~~~~~~~~~~~~~~~ 231 (695)
||+++|++++|++ +..+ .+++.+++++++++++|++......+.+.....+. ...++.++.....
T Consensus 98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 167 (631)
T PRK07769 98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPDE---------- 167 (631)
T ss_pred HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccccc----------
Confidence 9999999999994 4443 67899999999999999998765554433222221 1223333221100
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHH
Q 005468 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (695)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 311 (695)
. .. ........++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|++|
T Consensus 168 --------~--~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g 235 (631)
T PRK07769 168 --------V--GA--TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMG 235 (631)
T ss_pred --------c--cc--ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchh
Confidence 0 00 01112346789999999999999999999999999988877777778889999999999999999
Q ss_pred HHHHHHHHHcCcEEeEec---C--ChhhHHHHHHhcCC---eEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 005468 312 RANQVMTVYSGVAVGFYQ---G--DNMKLMDDMAALRP---TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (695)
Q Consensus 312 ~~~~~~~l~~G~~~~~~~---~--~~~~l~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k 383 (695)
+...+.+++.|+++++++ + ++..+++.+.++++ |++.++|.++..+..... ...
T Consensus 236 l~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~--~~~---------------- 297 (631)
T PRK07769 236 LITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG--LPK---------------- 297 (631)
T ss_pred hHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc--cch----------------
Confidence 988788888899998874 2 88899999999886 789999998876643100 000
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh---CC---ccccccccccccccccccCC
Q 005468 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---GG---RVTEGYGMTETSCLISQLDE 457 (695)
Q Consensus 384 ~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~---g~---~v~~~YG~TE~~~~~~~~~~ 457 (695)
.+. . ....+++|.+++||+++++++.++|.+.| |+ .++++||+||++..++....
T Consensus 298 -----~~~---~-----------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~ 358 (631)
T PRK07769 298 -----DGE---P-----------PLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPM 358 (631)
T ss_pred -----hcc---c-----------CcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCC
Confidence 000 0 00115899999999999999999999887 33 59999999999866554332
Q ss_pred CC---------------------------CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCC
Q 005468 458 GD---------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510 (695)
Q Consensus 458 ~~---------------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~ 510 (695)
.. ...+++|+|.++++++|+|.+++..++.|+ .|||||+|++++.|||++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge---~GEl~v~gp~v~~GY~~~ 435 (631)
T PRK07769 359 DEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQ---IGEIWLHGNNIGTGYWGK 435 (631)
T ss_pred CCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCC---EEEEEecCCCccccccCC
Confidence 11 012579999999999999977777777776 899999999999999999
Q ss_pred hhhhhcccC-----------------CCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhc-CcCcc
Q 005468 511 EIQTKEVID-----------------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK-CKFVG 572 (695)
Q Consensus 511 ~~~t~~~~~-----------------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~-~p~V~ 572 (695)
++.|++.|. .+|||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.|||++|.+ ||.|.
T Consensus 436 ~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~~p~v~ 513 (631)
T PRK07769 436 PEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQDLEYTAQEATKALR 513 (631)
T ss_pred hhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-CCeeeCHHHHHHHHHhcccccc
Confidence 999999884 25899999999995 9999999999999997 8999999999999986 89999
Q ss_pred e--EEEEeeCC----------------------CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHH
Q 005468 573 Q--CFVYGDSF----------------------NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMD 628 (695)
Q Consensus 573 ~--~~V~g~~~----------------------~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 628 (695)
+ ++|++.++ ++.++|+|++.++.. . .-.++|.
T Consensus 514 ~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~-------~-----------------~~~~~l~ 569 (631)
T PRK07769 514 TGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAH-------K-----------------LDPQPIA 569 (631)
T ss_pred CCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccc-------c-----------------ccHHHHH
Confidence 8 88888654 356888888765310 0 0033445
Q ss_pred HHHHhcCCCC-cc-eeeEEEEee--cCCCCCCCccCccccCChHHHHHHHHH
Q 005468 629 SLGREAQLRG-FE-FVKAVTLVL--EPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 629 ~~~~~~~l~~-~~-~p~~i~~~~--~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
++++ ++|+. |+ .|+.+.+++ ++| +|++|||+|++|++.|.+
T Consensus 570 ~~~~-~~l~~~~~~~p~~~~~v~~~~lP------~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 570 DDIR-AAIAVRHGVTVRDVLLVPAGSIP------RTSSGKIARRACRAAYLD 614 (631)
T ss_pred HHHH-HHHHHHcCCCccEEEEECCCccc------cCCCcHHHHHHHHHHHHc
Confidence 5554 44554 55 478888887 699 999999999999987764
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-67 Score=588.06 Aligned_cols=506 Identities=22% Similarity=0.277 Sum_probs=400.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
.+...|+.++|.+.++++||++|+.+. ++. +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 84 (534)
T PRK05852 12 SDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA 84 (534)
T ss_pred hhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHH
Confidence 346678999999999999999999864 322 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (695)
++||+++|++++|+++.++.+++.+++++++++++|++............. .....+.+..... .. .+....
T Consensus 85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~-----~~~~~~ 156 (534)
T PRK05852 85 LLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTR--WWPLTVNVGGDSG-PS-----GGTLSV 156 (534)
T ss_pred HHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccccc--ccceeeeeccccc-cc-----cccccc
Confidence 999999999999999999999999999999999999986433221111000 0111111111100 00 000000
Q ss_pred eHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH
Q 005468 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (695)
.+..... ............+++++|+|||||||.||||+++|+++...+......+.+..+|++++.+|++|.+++..
T Consensus 157 ~~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 234 (534)
T PRK05852 157 HLDAATE--PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA 234 (534)
T ss_pred ccccccC--CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHH
Confidence 1111000 00001111223578899999999999999999999999998887777788899999999999999999987
Q ss_pred -HHHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcC
Q 005468 315 -QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (695)
Q Consensus 315 -~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (695)
.+.+++.|+++++.. +++..+++.|+++++|+++++|+++..+.+......
T Consensus 235 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------- 289 (534)
T PRK05852 235 ALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP------------------------- 289 (534)
T ss_pred HHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc-------------------------
Confidence 456788888888754 578899999999999999999999998876321100
Q ss_pred CCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-----C---CCC
Q 005468 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-----D---NLS 462 (695)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-----~---~~~ 462 (695)
.....+++|.+++||+++++++.+.+.+.+++++++.||+||++..++..... . ...
T Consensus 290 ---------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~ 354 (534)
T PRK05852 290 ---------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVST 354 (534)
T ss_pred ---------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCccccc
Confidence 00011589999999999999999999999999999999999998766543321 1 123
Q ss_pred CCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEe
Q 005468 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 463 ~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (695)
+.+|. .++++++++| +++..++.|+ .|||+|+|+.++.|||++++.|.+.| .+|||+|||+|++|+||++++.|
T Consensus 355 g~~g~-~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~g 428 (534)
T PRK05852 355 GLVGR-STGAQIRIVG-SDGLPLPAGA---VGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRG 428 (534)
T ss_pred ccCCC-CCCCeEEEEC-CCCCCCCCCC---ceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEe
Confidence 34444 6999999999 5566677776 89999999999999999999999998 68999999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRA 619 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (695)
|.||+||. +|.+|+|.+||+++.++|+|.+|+|+|.++ ++.++++|++++.. +..
T Consensus 429 R~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~--------~~~------------- 486 (534)
T PRK05852 429 RIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESA--------PPT------------- 486 (534)
T ss_pred cchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCC--------CCC-------------
Confidence 99999996 899999999999999999999999999764 35688888876521 011
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 620 RAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 620 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.++|.++++ .+|+.|++|..|++++++| +|++||++|++|+++|.+
T Consensus 487 ----~~~i~~~~~-~~l~~~~~P~~i~~v~~iP------~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 487 ----AEELVQFCR-ERLAAFEIPASFQEASGLP------HTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred ----HHHHHHHHH-HhcccccCCeEEEEhhhcC------CCCCccccHHHHHHHhcc
Confidence 345666665 6799999999999999999 999999999999998864
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=609.03 Aligned_cols=477 Identities=20% Similarity=0.249 Sum_probs=392.5
Q ss_pred CCHHHHHHHHHHh--cCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 79 GTTHDNFVRAVDT--FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 79 ~tl~~~l~~~a~~--~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
.|+.++|.+++++ +||++|+... +.+||+||+++++++|++|.+.|+++|++|+|+++|+++|+++++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 73 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL 73 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3789999998886 7999999642 249999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|++++|+++.++.+++.+++++++++++|++......+... . ++ ..
T Consensus 74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~-~~---------------------~~ 124 (705)
T PRK06060 74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS-------R-VA---------------------EA 124 (705)
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc-------c-cc---------------------hh
Confidence 9999999999999999999999999999999999986544332110 0 00 01
Q ss_pred HHHHhccc-cCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhc-cccccCCCcEEEEeCChhhHHHHHH
Q 005468 237 SNLLSQGR-SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT-LGTKFYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (695)
.++..... ..+....+..++++++|+|||||||.||||+++|+++.+.+.... ..+.+.++|++++.+|++|.+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 204 (705)
T PRK06060 125 AELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGN 204 (705)
T ss_pred hhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhH
Confidence 11111100 011112234578999999999999999999999999988776553 3467889999999999999988754
Q ss_pred -HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCC
Q 005468 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (695)
Q Consensus 315 -~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (695)
.+.+++.|+++++.+ .++..+.+.++++++|+++++|+++..+.+....
T Consensus 205 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---------------------------- 256 (705)
T PRK06060 205 SVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP---------------------------- 256 (705)
T ss_pred HHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------------
Confidence 567899999999876 5788889999999999999999999888652100
Q ss_pred CCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCCCCCCCcCCCcc
Q 005468 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470 (695)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 470 (695)
...+++|.+++||+++++++.+.+.+.+ ++++++.||+||++.++..........+++|+|++
T Consensus 257 ----------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~ 320 (705)
T PRK06060 257 ----------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLP 320 (705)
T ss_pred ----------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCC
Confidence 0014899999999999999999999988 58999999999998655444333455788999999
Q ss_pred CcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeec
Q 005468 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKL 550 (695)
Q Consensus 471 ~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl 550 (695)
+++++|+| ++++.++.|+ .|||||+|++++.|||++|+.+. ..+|||+|||+|++++||+++|+||+||+||+
T Consensus 321 ~~~v~i~d-~~g~~~~~g~---~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~ 393 (705)
T PRK06060 321 PYEIRVVA-PDGTTAGPGV---EGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVI 393 (705)
T ss_pred CcEEEEEC-CCCCCCCCCC---ceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEE
Confidence 99999999 5566667676 89999999999999999998653 36899999999999999999999999999997
Q ss_pred CCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHH
Q 005468 551 AQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADM 627 (695)
Q Consensus 551 ~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 627 (695)
+|++|+|.+||+++.+||.|.+++|++.++ ++.++|+|++.++. .. + ....++|
T Consensus 394 -~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~--------~~----------~----~~~~~~i 450 (705)
T PRK06060 394 -GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGA--------TI----------D----GSVMRDL 450 (705)
T ss_pred -CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEecccc--------Cc----------C----hHHHHHH
Confidence 899999999999999999999999998653 35788999886531 00 1 1123456
Q ss_pred HHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 628 DSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 628 ~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
+++++ ++|+.|++|..|++++++| +|++||++|++|++.+.
T Consensus 451 ~~~l~-~~L~~~~~P~~i~~v~~iP------~t~~GKidr~~L~~~~~ 491 (705)
T PRK06060 451 HRGLL-NRLSAFKVPHRFAVVDRLP------RTPNGKLVRGALRKQSP 491 (705)
T ss_pred HHHHH-HhCCCCcCCcEEEEeecCC------CCcchhhHHHHHHhhcc
Confidence 66665 6899999999999999999 99999999999998764
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=583.67 Aligned_cols=498 Identities=20% Similarity=0.255 Sum_probs=410.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..+|+.++|.+.++++||++|+.+. + +.+||+||.+++.++|.+|.+.|+++|++|+|+++|+++|+++++
T Consensus 19 ~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~l 89 (542)
T PRK06155 19 SERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFL 89 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4578999999999999999999764 3 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|++++|+++.++.+++.++++++++++++++.+....+.........++.++.++...... ..... ..
T Consensus 90 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~ 162 (542)
T PRK06155 90 GCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVS----VPAGW---ST 162 (542)
T ss_pred HHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccc----ccccc---ch
Confidence 999999999999999999999999999999999999887766655443333455666665432100 00000 00
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (695)
.++.. ...........++++++|+|||||||.||||+++|+++..........+++.+++++++.+|++|.+++...+
T Consensus 163 ~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~ 240 (542)
T PRK06155 163 APLPP--LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFF 240 (542)
T ss_pred hhhcc--cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHH
Confidence 11111 0111122334678999999999999999999999999988777666678889999999999999999998888
Q ss_pred HHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 005468 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (695)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (695)
.+++.|+++++.+ +++..+++.|+++++|++.++|+++..+.+.....
T Consensus 241 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------- 289 (542)
T PRK06155 241 QALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARE------------------------------- 289 (542)
T ss_pred HHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc-------------------------------
Confidence 8999999998877 68999999999999999999999998776521000
Q ss_pred hhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEE
Q 005468 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475 (695)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ 475 (695)
....+++|.++.|| +++++.+.+++.+|+++++.||+||++.++.... .....+++|.|.++++++
T Consensus 290 -----------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~ 355 (542)
T PRK06155 290 -----------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGRLAPGFEAR 355 (542)
T ss_pred -----------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCccCCCceEE
Confidence 00114788888666 5788999999989999999999999987665432 345678899999999999
Q ss_pred EeecCCCCCCCCCCCCCcceEEEeCC---ccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCC
Q 005468 476 LVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (695)
Q Consensus 476 i~d~~~~~~~~~~~~~~~GEl~v~g~---~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~ 552 (695)
|+| +++..++.|. .|||+++|+ +++.||+++++.|.+.| .+|||+|||+|++++||+++|+||.||+||+ +
T Consensus 356 i~d-~~~~~~~~g~---~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~-~ 429 (542)
T PRK06155 356 VVD-EHDQELPDGE---PGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRR-R 429 (542)
T ss_pred EEC-CCCCCCCCCC---ceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEEe-C
Confidence 999 5566777776 899999998 69999999999999988 7999999999999999999999999999996 8
Q ss_pred eeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
|++|+|++||+++.+||+|.+|+|++.++ +..+.++++++++. ..+ ..++++
T Consensus 430 G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~~~~ 484 (542)
T PRK06155 430 GENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGT--------ALE-----------------PVALVR 484 (542)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCC--------CCC-----------------HHHHHH
Confidence 99999999999999999999999998764 35778888876531 011 345566
Q ss_pred HHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
+++ .+|+.|++|..|++++++| +|++||++|++|++++-
T Consensus 485 ~~~-~~l~~~~~P~~i~~~~~iP------~t~~GKi~r~~l~~~~~ 523 (542)
T PRK06155 485 HCE-PRLAYFAVPRYVEFVAALP------KTENGKVQKFVLREQGV 523 (542)
T ss_pred HHH-hhCcCccCCcEEEEeccCC------CCcccceeHHHHHhhcc
Confidence 665 6899999999999999999 99999999999998663
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=583.93 Aligned_cols=497 Identities=21% Similarity=0.290 Sum_probs=406.4
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.|+.++|.+.++.+|+++|+... +...+..+.+||+||++++.++|.+|.+.|+++|++|+++++|+++|+++++||
T Consensus 22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~ 98 (538)
T TIGR03208 22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC 98 (538)
T ss_pred CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 58999999999999999999763 212223467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-----hHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceE
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (695)
+++|++++|+++.++.+++.++++.+++++++++.... ..+.......+..+.++..+....
T Consensus 99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 165 (538)
T TIGR03208 99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGD------------- 165 (538)
T ss_pred HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCC-------------
Confidence 99999999999999999999999999999999987542 222222333445566666653210
Q ss_pred eeHHHHHhccccCC-------CCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCCh
Q 005468 234 LTYSNLLSQGRSNL-------QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (695)
Q Consensus 234 ~~~~~~~~~~~~~~-------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl 306 (695)
..++.++....... .......++++++|+|||||||.||||+++|+++...+......+++..+|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 245 (538)
T TIGR03208 166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPM 245 (538)
T ss_pred cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCc
Confidence 12333322111000 01123467899999999999999999999999999988877777788899999999999
Q ss_pred hhHHHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 005468 307 AHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (695)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (695)
+|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.......
T Consensus 246 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-------------------- 305 (538)
T TIGR03208 246 AHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKES-------------------- 305 (538)
T ss_pred hhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhcc--------------------
Confidence 99998766 567899999998876 68999999999999999999999998876532100
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC--CCC
Q 005468 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NLS 462 (695)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~~~ 462 (695)
+ ...+++|.+++||+++++++.+++.+.+|+++++.||+||++++++...... ...
T Consensus 306 -----~-----------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 363 (538)
T TIGR03208 306 -----G-----------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKAS 363 (538)
T ss_pred -----C-----------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhcc
Confidence 0 0014899999999999999999999888999999999999987665443322 234
Q ss_pred CCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEe
Q 005468 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 463 ~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (695)
.++|+|+++++++|+| +++..++.|+ .|||+|+|+.++.||+++++.|. ++.+|||+|||+|++|++|.++++|
T Consensus 364 ~~~G~~~~g~~v~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~g 437 (538)
T TIGR03208 364 TTDGRPLPGVEVKVID-ANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRING 437 (538)
T ss_pred CcccccCCCCEEEEEC-CCCCCCcCCC---CcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEEe
Confidence 6799999999999999 5566666665 89999999999999999998875 3578999999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRA 619 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (695)
|.||+||. +|++|+|.+||+++.+||.|.+++|++.++ ++.++|+|++.++. ..+
T Consensus 438 R~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~~------------- 495 (538)
T TIGR03208 438 RSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGC--------TLD------------- 495 (538)
T ss_pred ccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCC--------CCC-------------
Confidence 99999995 899999999999999999999999999754 36789999987631 111
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHH
Q 005468 620 RAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAK 671 (695)
Q Consensus 620 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~ 671 (695)
.+++.+++++.+++.|++|..|++++++| +|++||++|++|+
T Consensus 496 ----~~~l~~~~~~~~l~~~~~P~~i~~v~~iP------~t~~gKv~r~~L~ 537 (538)
T TIGR03208 496 ----FAAMVAFLKAQKVALQYIPERLEVVDALP------ATPAGKIQKFRLR 537 (538)
T ss_pred ----HHHHHHHHHhcchhhccCCcEEEEeccCC------CCCccccchHhhc
Confidence 23455566545799999999999999999 9999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=607.34 Aligned_cols=491 Identities=22% Similarity=0.258 Sum_probs=388.0
Q ss_pred CCCCHHHHHHHHHHhcCC-CccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+..|+.++|.++++++|+ ++|+... .++++||+||.++++++|++|.+. +++||+|+|+++|++||++++
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~--------~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~ 272 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDV--------NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI 272 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcC--------CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence 457999999999999998 5777531 124699999999999999999987 599999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHH--hcccCCCCceEEEEECCCCCCCCCCCcCCCceE
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLL--SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~--~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (695)
|||+++|++++|+++.++.+++.+++++++++++|++.+..+... .....++.+..+ .+++....
T Consensus 273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~------------ 339 (718)
T PRK08043 273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWV-YLEDLKDD------------ 339 (718)
T ss_pred HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEE-Ehhhhhhh------------
Confidence 999999999999999999999999999999999999876543211 111112222222 22221000
Q ss_pred eeHHHH--H-hccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHH
Q 005468 234 LTYSNL--L-SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310 (695)
Q Consensus 234 ~~~~~~--~-~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 310 (695)
..+.+. . ..............++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~ 419 (718)
T PRK08043 340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSF 419 (718)
T ss_pred cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhh
Confidence 011110 0 0000001111234679999999999999999999999999999887777777889999999999999999
Q ss_pred HHHH-HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005468 311 ERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (695)
Q Consensus 311 ~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~ 387 (695)
++.. .+.+++.|+++++.+ .+...+++.+.++++|+++++|+++..+.+.. .
T Consensus 420 g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~-----~-------------------- 474 (718)
T PRK08043 420 GLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA-----N-------------------- 474 (718)
T ss_pred hhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc-----C--------------------
Confidence 9876 567899999999876 46678889999999999999999887654310 0
Q ss_pred hcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCC
Q 005468 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467 (695)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 467 (695)
. ++ .++||.+++||+++++++.+.|++.+|++++++||+||+++.++...+.....+++|+
T Consensus 475 --~------~~-----------~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~ 535 (718)
T PRK08043 475 --P------YD-----------FARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGR 535 (718)
T ss_pred --c------cc-----------ccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCCC
Confidence 0 00 1589999999999999999999999999999999999998776655444456789999
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccC--Chhh-------hhcccCCCCeeecccEEEEecCCcE
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK--DEIQ-------TKEVIDEDGWFHTGDIGMWIPGGRL 538 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~--~~~~-------t~~~~~~~gw~~TGDlg~~~~dG~l 538 (695)
|+||++++++|.++ .+ +.|||+++|++++.|||+ +++. +.+.+..+|||+|||+|++|+||++
T Consensus 536 p~pg~~~~i~d~~~-----~~---~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l 607 (718)
T PRK08043 536 ILPGMDARLLSVPG-----IE---QGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFV 607 (718)
T ss_pred cCCCCeeEEecCCC-----CC---CceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcE
Confidence 99999999998432 12 269999999999999998 4542 2233346899999999999999999
Q ss_pred EEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhC
Q 005468 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCN 615 (695)
Q Consensus 539 ~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (695)
+|+||+||+||+ +|++|+|.|||+++.+|+.+.+++|++.++ ++.+++++.... ++
T Consensus 608 ~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~-----------~~--------- 666 (718)
T PRK08043 608 QIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSE-----------LT--------- 666 (718)
T ss_pred EEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcc-----------cC---------
Confidence 999999999997 799999999999999999888888888553 356666653211 11
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 616 DPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 616 ~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.+++++++++..|+.|++|+.|.+++++| +|++||++|++|++.+.+
T Consensus 667 --------~~~l~~~~~~~~l~~~~vP~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 667 --------REKLQQYAREHGVPELAVPRDIRYLKQLP------LLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred --------HHHHHHHHHhcCCCcccCCceEEEecccC------cCCCCCcCHHHHHHHHhc
Confidence 34567777645599999999999999999 999999999999887654
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=588.80 Aligned_cols=517 Identities=23% Similarity=0.304 Sum_probs=418.8
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
.|+.++|++.+..+|+++|+.+. +. +.+.+||+||.+++.++|++|.+ .|+++||+|+++++|+++|+++++|
T Consensus 10 ~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA 83 (576)
T PRK05620 10 LSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFA 83 (576)
T ss_pred CcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 58999999999999999998753 21 24779999999999999999986 7999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++.+++.++++.++++++|++....+.+.+....++.++.++.++................+.+|.
T Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (576)
T PRK05620 84 VACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYE 163 (576)
T ss_pred HHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHH
Confidence 99999999999999999999999999999999999887777766666666667676665432111111111223456788
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhh--ccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
++.+.... ..+.....++++++++|||||||.||||+++|+++....... ...+.+..++++++.+|++|.+++...
T Consensus 164 ~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~ 242 (576)
T PRK05620 164 ALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVP 242 (576)
T ss_pred HHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHH
Confidence 88764322 222234567899999999999999999999999986654432 224677889999999999999999888
Q ss_pred HHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 316 VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 316 ~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+.++..|+++++.. .++..+++.|+++++|++.++|+++..++....... +
T Consensus 243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------~ 295 (576)
T PRK05620 243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP---------------------------P 295 (576)
T ss_pred HHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC---------------------------c
Confidence 88999999998865 689999999999999999999999988765311000 0
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC--------CCCCCc
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--------NLSGHV 465 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--------~~~~~v 465 (695)
+ ..++|.+++||+++++++.+.|.+.+|+++++.||+||++..++...+.+ ....++
T Consensus 296 ----~-----------~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (576)
T PRK05620 296 ----E-----------RMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQ 360 (576)
T ss_pred ----c-----------cCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCcccccccccccccc
Confidence 0 03799999999999999999999989999999999999987655433221 123478
Q ss_pred CCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhh----------------hcccCCCCeeecccE
Q 005468 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQT----------------KEVIDEDGWFHTGDI 529 (695)
Q Consensus 466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t----------------~~~~~~~gw~~TGDl 529 (695)
|++.++++++++|. +...+. .+...|||+++|+.++.|||++++.+ .+.|..+|||+|||+
T Consensus 361 G~~~~~~~~~i~~~--g~~~~~-~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~ 437 (576)
T PRK05620 361 GRFPASLEYRIVND--GQVMES-TDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDV 437 (576)
T ss_pred CCcCCceeEEEecC--CccccC-CCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCce
Confidence 99999999999984 333321 11137999999999999999999988 334556899999999
Q ss_pred EEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCC
Q 005468 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQ 606 (695)
Q Consensus 530 g~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~ 606 (695)
|++++||.++++||.||+||. +|++|+|.+||++|.+||.|.+|+|++.++ ++.+++++++.++.. .
T Consensus 438 ~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~--------~- 507 (576)
T PRK05620 438 GSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIE--------P- 507 (576)
T ss_pred EEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCC--------c-
Confidence 999999999999999999995 899999999999999999999999999764 357888888765320 0
Q ss_pred cccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 607 YENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 607 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
+ +...++|+++++ ++|+.|++|+.|++++++| +|.+||++|++|++++++.
T Consensus 508 ---------~----~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~~P------~t~~GKv~r~~L~~~~~~~ 558 (576)
T PRK05620 508 ---------T----RETAERLRDQLR-DRLPNWMLPEYWTFVDEID------KTSVGKFDKKDLRQHLADG 558 (576)
T ss_pred ---------c----cccHHHHHHHHH-hhCccccCCeEEEEeccCC------CCCcccCcHHHHHHHHhcC
Confidence 0 012456667775 7899999999999999999 9999999999999999864
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=585.48 Aligned_cols=520 Identities=22% Similarity=0.283 Sum_probs=398.4
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.|+.++|.+.++++||++|+.+. + ..+||+||.++++++|++|.++|+++||+|+|+++|+++|++++|||
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~ 84 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV 84 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 57899999999999999999764 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCC------CceEEEEECCCCCCCCCCCcCCCce
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP------TVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~------~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
+++|++++|+++.++.+++.++++.++++++|++.+....+......++ .++ ++.++....... ....
T Consensus 85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~ 158 (579)
T PLN03102 85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLP-VIFIHEIDFPKR-----PSSE 158 (579)
T ss_pred HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCce-EEEecccccccC-----Cccc
Confidence 9999999999999999999999999999999998877665554433221 122 444443211100 0111
Q ss_pred EeeHHHHHhccccCCCC----CCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhh
Q 005468 233 ILTYSNLLSQGRSNLQP----FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h 308 (695)
..++.++.......... .....++++++|+|||||||.||||+++|+++............+...+++++.+|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h 238 (579)
T PLN03102 159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFH 238 (579)
T ss_pred ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhh
Confidence 24566665433221111 12245789999999999999999999999997555443333445667789999999999
Q ss_pred HHHHHHHHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005468 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (695)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~ 387 (695)
.+++...+.+++.|+++++.+ +++..+++.|+++++|++.++|+++..|.+......
T Consensus 239 ~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 296 (579)
T PLN03102 239 CNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL---------------------- 296 (579)
T ss_pred hcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc----------------------
Confidence 999887777888898888776 688999999999999999999999998875311000
Q ss_pred hcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC--------
Q 005468 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-------- 459 (695)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-------- 459 (695)
....+++.+++||+++++.+.++++. +|++++++||+||+++.++.....+
T Consensus 297 --------------------~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~ 355 (579)
T PLN03102 297 --------------------SPRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPEN 355 (579)
T ss_pred --------------------CCcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccccccCCcc
Confidence 00035778999999999999999876 5999999999999986443221100
Q ss_pred ------CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEe
Q 005468 460 ------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533 (695)
Q Consensus 460 ------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~ 533 (695)
...+..+.++++ +++++.+....++.+. ...|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|
T Consensus 356 ~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~-~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d 431 (579)
T PLN03102 356 QQMELKARQGVSILGLAD--VDVKNKETQESVPRDG-KTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIH 431 (579)
T ss_pred cccccccCCCcccccccc--eEEeccccccccCCCC-CCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEc
Confidence 112333444444 4555544444333221 1379999999999999999999999999 68999999999999
Q ss_pred cCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccH
Q 005468 534 PGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENL 610 (695)
Q Consensus 534 ~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~ 610 (695)
+||+++|+||.||+||+ +|++|+|.+||+++.+||.|.+++|++.++ ++.++|+|++.++... ....+
T Consensus 432 ~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~--------~~~~~ 502 (579)
T PLN03102 432 PDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETT--------KEDRV 502 (579)
T ss_pred CCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccc--------ccccc
Confidence 99999999999999996 899999999999999999999999999764 4688999988753210 00000
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH-HHHHHH
Q 005468 611 EQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA-IADMYA 683 (695)
Q Consensus 611 ~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~-i~~ly~ 683 (695)
.+.. .-..+++++++ .+|+.|++|..|++++++| +|++||++|++|++.+.+. .++-|+
T Consensus 503 ~~~~-------~~~~~l~~~~~-~~L~~~~~P~~i~~~~~~P------~t~~gKi~r~~L~~~~~~~~~~~~~~ 562 (579)
T PLN03102 503 DKLV-------TRERDLIEYCR-ENLPHFMCPRKVVFLQELP------KNGNGKILKPKLRDIAKGLVVEDEDN 562 (579)
T ss_pred cccc-------ccHHHHHHHHH-hhcccccCCeEEEEcccCC------CCCcccccHHHHHHHHHHhhhHHHHH
Confidence 0000 01346677776 6799999999999999999 9999999999999998763 344444
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-66 Score=584.50 Aligned_cols=512 Identities=25% Similarity=0.330 Sum_probs=413.9
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.|+.++|+++++++|+++|+.+. + +.+||+||.+++.++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 32 ~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~ 102 (573)
T PRK05605 32 TTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAV 102 (573)
T ss_pred CCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 48999999999999999999864 2 24999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCC---------------
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP--------------- 223 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~--------------- 223 (695)
+++|++++|+++.++.+++.+++++++++++|+++.....+.+..... .++.++.++.......
T Consensus 103 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (573)
T PRK05605 103 LRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLLQRLALRLPIPALRK 181 (573)
T ss_pred HhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeecccccccccccccccccccccc
Confidence 999999999999999999999999999999999887665554433222 2344444432110000
Q ss_pred --CCCcCCCceEeeHHHHHhccccC---CCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcccc-cc-CC
Q 005468 224 --SLPITTGVQILTYSNLLSQGRSN---LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT-KF-YP 296 (695)
Q Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~-~~ 296 (695)
...........+|.++....... ........++++++++|||||||.||+|++||+++...+......+ ++ ..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~ 261 (573)
T PRK05605 182 ARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG 261 (573)
T ss_pred cccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCC
Confidence 00000112335677665442211 0122335678999999999999999999999999988776443322 22 34
Q ss_pred CcEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHH
Q 005468 297 SDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374 (695)
Q Consensus 297 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~ 374 (695)
++++++.+|++|.+++.. .+.+++.|+++++.+ .++..+++.|+++++|++.++|++++.+.+.....
T Consensus 262 ~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---------- 331 (573)
T PRK05605 262 PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEER---------- 331 (573)
T ss_pred CcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcccc----------
Confidence 789999999999999876 445789999998877 79999999999999999999999999887631110
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccc
Q 005468 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQ 454 (695)
Q Consensus 375 ~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~ 454 (695)
+ ...+++|.+++||+++++++.+++.+.+++++++.||+||++++++.
T Consensus 332 ---------------~-----------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 379 (573)
T PRK05605 332 ---------------G-----------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVG 379 (573)
T ss_pred ---------------C-----------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhc
Confidence 0 00147999999999999999999999889999999999999877665
Q ss_pred cCCCC-CCCCCcCCCccCcEEEEeecCC-CCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEE
Q 005468 455 LDEGD-NLSGHVGSPNAACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532 (695)
Q Consensus 455 ~~~~~-~~~~~vG~p~~~~~v~i~d~~~-~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~ 532 (695)
..... ...+++|.|+++++++|+|.++ +..++.|. .|||+++|+.++.||+++++.+.+.| .+|||+|||+|++
T Consensus 380 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~ 455 (573)
T PRK05605 380 NPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE---EGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVM 455 (573)
T ss_pred CCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCC---eeEEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEEE
Confidence 54332 4568999999999999999665 45556665 89999999999999999999999998 5789999999999
Q ss_pred ecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCccc
Q 005468 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYEN 609 (695)
Q Consensus 533 ~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~ 609 (695)
|++|+++++||.||+||+ +|++|+|.+||+++.+|+.|.+++|+|.++ ++.++++|+++++. ..+
T Consensus 456 ~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~--------~~~--- 523 (573)
T PRK05605 456 EEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGA--------ALD--- 523 (573)
T ss_pred cCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCC--------CCC---
Confidence 999999999999999996 899999999999999999999999998653 46788888887631 011
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHH
Q 005468 610 LEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 610 ~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~ 679 (695)
.++|+++++ +.|+.|++|..|++++++| +|.+||++|++|++++.+++.
T Consensus 524 --------------~~~l~~~~~-~~l~~~~~p~~i~~~~~iP------~t~~GKi~r~~L~~~~~~~~~ 572 (573)
T PRK05605 524 --------------PEGLRAYCR-EHLTRYKVPRRFYHVDELP------RDQLGKVRRREVREELLEKLG 572 (573)
T ss_pred --------------HHHHHHHHH-HhCccccCCcEEEEeccCC------CCCcccccHHHHHHHHHHHhc
Confidence 245566665 6899999999999999999 999999999999999877653
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-66 Score=573.31 Aligned_cols=476 Identities=26% Similarity=0.336 Sum_probs=401.8
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
++|+.+.|.+++.++||++|+.+. + +.+||+||.+++.++|++|.+.|+++||+|+|+++|+++|++++||
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA 71 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 468999999999999999999764 2 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++.+++.+++++++++.++++......+.... .+.++
T Consensus 72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-----------------------------~~~~~ 122 (483)
T PRK03640 72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-----------------------------SVKFA 122 (483)
T ss_pred HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc-----------------------------cccHH
Confidence 9999999999999999999999999999999999876544332110 01233
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (695)
++...............++++++++|||||||.||+|++||+++...+......+++.++|++++.+|++|++++...+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 202 (483)
T PRK03640 123 ELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMR 202 (483)
T ss_pred HHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHH
Confidence 33332211112223346789999999999999999999999999887776666678899999999999999999988888
Q ss_pred HHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCch
Q 005468 318 TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (695)
Q Consensus 318 ~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~ 396 (695)
++..|+++++.+ .++..+++.++++++|++.++|+++..+.+.....
T Consensus 203 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------------------------------- 250 (483)
T PRK03640 203 SVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-------------------------------- 250 (483)
T ss_pred HHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------------
Confidence 899999999887 69999999999999999999999999886521100
Q ss_pred hHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCCCCCcCCCccCcEE
Q 005468 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACEI 474 (695)
Q Consensus 397 ~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v 474 (695)
....++|.+++||+++++.+.++++.. |+++++.||+||++..++...+. ....+++|+|++++++
T Consensus 251 -----------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~ 318 (483)
T PRK03640 251 -----------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCEL 318 (483)
T ss_pred -----------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEE
Confidence 011489999999999999999998874 99999999999987654433332 2556899999999999
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCee
Q 005468 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGE 554 (695)
Q Consensus 475 ~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~ 554 (695)
++.+. + ..++.|. .|||+++|++++.||+++++.+.+.| .+|||+|||++++++||.++++||+||++|+ +|+
T Consensus 319 ~i~~~-~-~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~-~G~ 391 (483)
T PRK03640 319 KIEKD-G-VVVPPFE---EGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIIS-GGE 391 (483)
T ss_pred EEecC-C-CcCCCCC---ceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEe-CCE
Confidence 99983 3 4556665 89999999999999999999999988 6899999999999999999999999999996 899
Q ss_pred eechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHH
Q 005468 555 YIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLG 631 (695)
Q Consensus 555 ~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 631 (695)
+|+|.+||+.+.++++|.+++|++.++ +..++++++++.. .+ .+++++++
T Consensus 392 ~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~----------~~-----------------~~~l~~~~ 444 (483)
T PRK03640 392 NIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGE----------VT-----------------EEELRHFC 444 (483)
T ss_pred EECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCC----------CC-----------------HHHHHHHH
Confidence 999999999999999999999998654 3567777776542 11 34455666
Q ss_pred HhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 632 REAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 632 ~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
+ +.|+.|++|..|++++++| +|++||++|++|++++++
T Consensus 445 ~-~~l~~~~~p~~i~~~~~iP------~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 445 E-EKLAKYKVPKRFYFVEELP------RNASGKLLRHELKQLVEE 482 (483)
T ss_pred H-HhccCCCCCcEEEEeCCCC------CCCccceeHHHHHHHHhh
Confidence 5 6799999999999999999 999999999999999875
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-66 Score=582.87 Aligned_cols=517 Identities=22% Similarity=0.287 Sum_probs=415.2
Q ss_pred CCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcC
Q 005468 55 KWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134 (695)
Q Consensus 55 ~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~g 134 (695)
...+||+...... .+...|+.++|.+.++++|+++|+.+. .+. +.+||+||.+++.++|++|.+.|
T Consensus 11 ~~~~~~~~~~~~~-------~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g 76 (546)
T PLN02330 11 NEHIFRSRYPSVP-------VPDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLG 76 (546)
T ss_pred cceeeccCCCCCC-------CCCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhC
Confidence 3456776644421 235688999999999999999999753 211 46999999999999999999999
Q ss_pred CCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEE
Q 005468 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVV 214 (695)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~ 214 (695)
+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++++++++++++......+.... +. ++.
T Consensus 77 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-----~~-~i~ 150 (546)
T PLN02330 77 LRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG-----LP-VIV 150 (546)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC-----Cc-EEE
Confidence 999999999999999999999999999999999999999999999999999999999988766654321 22 333
Q ss_pred ECCCCCCCCCCCcCCCceEeeHHHHHhccccCCC--CCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcccc
Q 005468 215 IGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ--PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT 292 (695)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 292 (695)
+++.. ......|.+++........ ......++++++|+|||||||.||||+++|+++...+.......
T Consensus 151 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~ 220 (546)
T PLN02330 151 LGEEK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV 220 (546)
T ss_pred ecCCC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc
Confidence 33211 0112446666654322111 12334578999999999999999999999999987765432111
Q ss_pred --ccCCCcEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcc
Q 005468 293 --KFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368 (695)
Q Consensus 293 --~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 368 (695)
.....++.+.++|++|.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+......
T Consensus 221 ~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----- 295 (546)
T PLN02330 221 GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIV----- 295 (546)
T ss_pred CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccc-----
Confidence 1224568999999999999876 556789999988877 7999999999999999999999999887652100
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCcccccccccc
Q 005468 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTE 447 (695)
Q Consensus 369 ~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE 447 (695)
....+. ..++|.+++||+++++++.+++.+.| |+++++.||+||
T Consensus 296 -----------------------------~~~~~~------~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE 340 (546)
T PLN02330 296 -----------------------------EEFDLS------KLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTE 340 (546)
T ss_pred -----------------------------cccccc------hheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccc
Confidence 000000 01589999999999999999999988 899999999999
Q ss_pred ccccccccC-CC----CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCC
Q 005468 448 TSCLISQLD-EG----DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG 522 (695)
Q Consensus 448 ~~~~~~~~~-~~----~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~g 522 (695)
++++..... +. ....+++|.|+++++++|+|++++..++.|+ .|||+|+|++++.||+++++.+.+.++.+|
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g 417 (546)
T PLN02330 341 HSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNT---PGELCVRSQCVMQGYYNNKEETDRTIDEDG 417 (546)
T ss_pred cccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCC---ceEEEEecchhhhhhccCccchhhhccCCC
Confidence 976543221 11 1334689999999999999977777777776 899999999999999999999999998899
Q ss_pred eeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHH
Q 005468 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAW 599 (695)
Q Consensus 523 w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~ 599 (695)
||+|||+|++++||+++++||.+|+||+ +|++|+|.+||+++.++|.|.+++|++.++ ++.++++|++.++.
T Consensus 418 ~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~---- 492 (546)
T PLN02330 418 WLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKA---- 492 (546)
T ss_pred ceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCC----
Confidence 9999999999999999999999999997 799999999999999999999999999653 46788888887531
Q ss_pred HHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 600 AASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.. + .++|.++++ .+|+.|++|+.|.+++++| +|++||++|++|++++...
T Consensus 493 ----~~----------~-------~~~l~~~~~-~~l~~~~~p~~~~~v~~iP------~t~~GK~~r~~L~~~~~~~ 542 (546)
T PLN02330 493 ----KE----------S-------EEDILNFVA-ANVAHYKKVRVVQFVDSIP------KSLSGKIMRRLLKEKMLSI 542 (546)
T ss_pred ----CC----------C-------HHHHHHHHH-HhcccccCceEEEEeccCC------CCCCcceeHHHHHHHHHhh
Confidence 00 0 234555555 6899999999999999999 9999999999999988654
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-66 Score=574.12 Aligned_cols=475 Identities=20% Similarity=0.241 Sum_probs=395.1
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
+++.+.|+++++++||++|+.+. + +.+||.||.+++.++|++|.+.|. +|++|+|+++|+++|+++++||
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~ 70 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA 70 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence 46889999999999999999753 2 359999999999999999999985 7999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (695)
+++|++++|+++.++.+++.++++.++++.+|++......+.... ..++.++. +.+
T Consensus 71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~------------------~~~ 126 (487)
T PRK07638 71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEE------GRVIEIDE------------------WKR 126 (487)
T ss_pred HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhcc------ceEEEehh------------------hhh
Confidence 999999999999999999999999999999999876544432110 11222211 111
Q ss_pred HHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHH
Q 005468 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (695)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 318 (695)
....... .........+++++|+|||||||.||||+++|++++..+......+++.++|+++...|++|..++...+.+
T Consensus 127 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~ 205 (487)
T PRK07638 127 MIEKYLP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAIST 205 (487)
T ss_pred hhhhccc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHH
Confidence 1111111 011112234678999999999999999999999999988877777888999999999999999888778889
Q ss_pred HHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 005468 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (695)
Q Consensus 319 l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (695)
++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+..
T Consensus 206 l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------------ 249 (487)
T PRK07638 206 LYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN------------------------------------ 249 (487)
T ss_pred HccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc------------------------------------
Confidence 99999999877 68999999999999999999999998886520
Q ss_pred HHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-CCCCCCcCCCccCcEEE
Q 005468 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIK 475 (695)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~ 475 (695)
....+.+.+++||++++.++.+++.+.+ ++.+++.||+||++.++...... ....+++|.|+++++++
T Consensus 250 ----------~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 319 (487)
T PRK07638 250 ----------RVIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVR 319 (487)
T ss_pred ----------CcCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEE
Confidence 0002455678899999999999999988 68899999999998766554322 24567899999999999
Q ss_pred EeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeee
Q 005468 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEY 555 (695)
Q Consensus 476 i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~ 555 (695)
|+| +++..++.|+ .|||+|+|+.++.|||++++.+.+.+ .+|||+|||+|++|++|+++++||++|+||+ +|++
T Consensus 320 i~d-~~g~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~-~G~~ 393 (487)
T PRK07638 320 ICN-EAGEEVQKGE---IGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMILF-GGIN 393 (487)
T ss_pred EEC-CCCCCCCCCC---CeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeEEe-CCEE
Confidence 999 5667777776 89999999999999999999887765 7899999999999999999999999999997 8999
Q ss_pred echHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHH
Q 005468 556 IAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGR 632 (695)
Q Consensus 556 v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 632 (695)
|+|.+||+++.++|+|.+|+|+|..+ ++.++++|+.... .++++++++
T Consensus 394 v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-----------------------------~~~l~~~~~ 444 (487)
T PRK07638 394 IFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSAT-----------------------------KQQLKSFCL 444 (487)
T ss_pred ECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCC-----------------------------HHHHHHHHH
Confidence 99999999999999999999999764 3677777764221 344555554
Q ss_pred hcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 633 EAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 633 ~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
+.|+.|++|..|++++++| +|++||++|++|++++.+
T Consensus 445 -~~l~~~~~p~~i~~v~~iP------~t~~GKv~r~~L~~~~~~ 481 (487)
T PRK07638 445 -QRLSSFKIPKEWHFVDEIP------YTNSGKIARMEAKSWIEN 481 (487)
T ss_pred -HHhhcccCCcEEEEecccC------CCCcccccHHHHHHHHhc
Confidence 6789999999999999999 999999999999988765
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-66 Score=577.32 Aligned_cols=501 Identities=26% Similarity=0.381 Sum_probs=423.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
+..++.++|.+.++.+|+++|+.+. + +.+||+||++++.++|+.|.+.|+++||+|+++++|+++++++++
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~l 73 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAAL 73 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4578999999999999999999863 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|++++|+++.++.+.+..+++.+++++++++.............++.++.++......... ......+|
T Consensus 74 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 147 (513)
T PRK07656 74 GALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP------HTEKMKTF 147 (513)
T ss_pred HHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc------CccccccH
Confidence 999999999999999999999999999999999999887666655544555666666654432110 00123567
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-H
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-Q 315 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~ 315 (695)
+++...... ........++++++|+|||||||.||+|.++|+++...+......+++.++|++++.+|++|.+++.. .
T Consensus 148 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (513)
T PRK07656 148 TDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGV 226 (513)
T ss_pred HHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHH
Confidence 777654332 12334457789999999999999999999999999988887777788999999999999999999877 5
Q ss_pred HHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCC
Q 005468 316 VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (695)
Q Consensus 316 ~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~ 394 (695)
+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+.+.....
T Consensus 227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------ 276 (513)
T PRK07656 227 NAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS------------------------------ 276 (513)
T ss_pred HHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC------------------------------
Confidence 66899999998866 68999999999999999999999999887631100
Q ss_pred chhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-ccccccccccccccccccCCCC-C--CCCCcCCCcc
Q 005468 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGD-N--LSGHVGSPNA 470 (695)
Q Consensus 395 ~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~-~--~~~~vG~p~~ 470 (695)
....+++|.+++||+++++++.+.+.+.+++ .+++.||+||++++++.+.... . ..+++|.|++
T Consensus 277 ------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~ 344 (513)
T PRK07656 277 ------------AEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIA 344 (513)
T ss_pred ------------CCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCC
Confidence 0011589999999999999999999999998 8999999999987776655433 2 2688999999
Q ss_pred CcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeec
Q 005468 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKL 550 (695)
Q Consensus 471 ~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl 550 (695)
+++++|+| +++..++.|. .|||+++|+.++.||+++++.+...+..+|||+|||+|+++++|.++++||.||+||+
T Consensus 345 ~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~ 420 (513)
T PRK07656 345 GVENKIVN-ELGEEVPVGE---VGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIV 420 (513)
T ss_pred CcEEEEEC-CCCCCCCCCC---ceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEe
Confidence 99999999 5667777776 8999999999999999999999999977999999999999999999999999999997
Q ss_pred CCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHH
Q 005468 551 AQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADM 627 (695)
Q Consensus 551 ~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 627 (695)
+|++|+|.+||+++.++++|.+++|++.++ ++.++++|++++.. +++ .++|
T Consensus 421 -~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~~-----------------~~~l 474 (513)
T PRK07656 421 -GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGA--------ELT-----------------EEEL 474 (513)
T ss_pred -CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCC--------CCC-----------------HHHH
Confidence 899999999999999999999999998653 46788899886421 111 3455
Q ss_pred HHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 628 DSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 628 ~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
.++++ ..|+.+++|..|++++++| +|++||++|++|++
T Consensus 475 ~~~~~-~~l~~~~~p~~i~~v~~iP------~t~~gK~~r~~l~~ 512 (513)
T PRK07656 475 IAYCR-EHLAKYKVPRSIEFLDELP------KNATGKVLKRALRE 512 (513)
T ss_pred HHHHH-hhcccccCCCEEEEecCCC------CCCccceeHHHHhc
Confidence 56665 6899999999999999999 99999999999875
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=579.22 Aligned_cols=494 Identities=21% Similarity=0.253 Sum_probs=404.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...++.++|.++++++|+++|+.+. + +.+||+||.++++++|.+|.+.|+++|++|+|+++|+++|+++++
T Consensus 21 ~~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 91 (527)
T TIGR02275 21 QDKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFF 91 (527)
T ss_pred cCCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 4568999999999999999999753 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchh-----HHHhcccCCCCceEEEEECCCCCCCCCCCcCCCc
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN-----SLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (695)
||+++|++++++++..+.+++.++++.+++++++++..... .........+.++.++....... .
T Consensus 92 a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~- 161 (527)
T TIGR02275 92 ALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV---------E- 161 (527)
T ss_pred HHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC---------c-
Confidence 99999999999999999999999999999999999865321 11111222344555555432110 0
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHH
Q 005468 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (695)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 311 (695)
..+...+..... ..+.....++++++|+|||||||.||||++||+++...+......+.+.++|++++.+|++|.++
T Consensus 162 --~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~ 238 (527)
T TIGR02275 162 --AELFLWLESPAE-PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYP 238 (527)
T ss_pred --chhhHHhhCcCc-cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhh
Confidence 011111111111 11223456789999999999999999999999999988887777788889999999999999999
Q ss_pred HHH--HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Q 005468 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (695)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (695)
+.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+......
T Consensus 239 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------- 295 (527)
T TIGR02275 239 LSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR----------------------- 295 (527)
T ss_pred hhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-----------------------
Confidence 875 566889999998866 689999999999999999999999988765321100
Q ss_pred cCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccC-CCCCCCCCcCC
Q 005468 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGS 467 (695)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~ 467 (695)
...+++|.+++||+++++++.+++.+.+|+++++.||+||++....... ..+...+++|.
T Consensus 296 -------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 356 (527)
T TIGR02275 296 -------------------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGR 356 (527)
T ss_pred -------------------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCC
Confidence 0014899999999999999999999989999999999999754332211 12234578999
Q ss_pred Cc-cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCC
Q 005468 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (695)
Q Consensus 468 p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (695)
|+ ++++++++| ++++..+.|+ .|||+++|+.++.|||++++.|.+.|+.+|||+|||+|+++++|+++++||.||
T Consensus 357 ~~~~~~~v~i~d-~~g~~~~~g~---~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d 432 (527)
T TIGR02275 357 PMSPDDEVRVVD-DHGNPVAPGE---TGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKD 432 (527)
T ss_pred CCCCCceEEEEC-CCCCCCCCCC---ceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccc
Confidence 99 589999999 5566666676 899999999999999999999999998999999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005468 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAV 623 (695)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (695)
+||+ +|++|+|.+||++|.+||+|.+++|++.++ ++.++|+|+++++. ..
T Consensus 433 ~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~---------~~----------------- 485 (527)
T TIGR02275 433 QINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPA---------LK----------------- 485 (527)
T ss_pred eeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCC---------CC-----------------
Confidence 9996 899999999999999999999999999764 36788999887631 11
Q ss_pred HHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHH
Q 005468 624 LADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAK 671 (695)
Q Consensus 624 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~ 671 (695)
.++|++++++.+++.|++|..|.+++++| +|++||++|++|+
T Consensus 486 ~~~l~~~l~~~~l~~~~~P~~i~~v~~iP------~t~sGKv~r~~L~ 527 (527)
T TIGR02275 486 AAQLRRFLRERGLAEYKLPDRVEFIDSLP------LTAVGKIDKKALR 527 (527)
T ss_pred HHHHHHHHHhCCCccccCCCEEEEeccCC------CCCccceeHHhcC
Confidence 34566666645699999999999999999 9999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-66 Score=576.67 Aligned_cols=503 Identities=22% Similarity=0.276 Sum_probs=409.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..+|+.++|.+.++++||++|+.+. +. .++++.+||+||.++++++|++|.++|+++||+|+|+++|+.+|+++++
T Consensus 5 ~~~~l~~~~~~~a~~~p~~~a~~~~---~~-~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~l 80 (517)
T PRK08008 5 GGQHLRQMWDDLADVYGHKTALIFE---SS-GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWF 80 (517)
T ss_pred ccccHHHHHHHHHHHCCCceEEEcc---cC-CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999999875 43 2345789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccC-CCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~-~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
||+++|++++|+++.++.+++.+++++++++.+|++.+....+.+.... ...++.+++.+...... ....+
T Consensus 81 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 152 (517)
T PRK08008 81 GLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPAD--------DGVSS 152 (517)
T ss_pred HHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCccc--------ccccC
Confidence 9999999999999999999999999999999999998877666554432 23355566655421110 11234
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~- 314 (695)
++++............+..++++++|+|||||||.||||++||+++............+..++++++.+|++|..+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 232 (517)
T PRK08008 153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA 232 (517)
T ss_pred HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHH
Confidence 5554433222112223446789999999999999999999999999865443333345778999999999999877665
Q ss_pred HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
.+.++..|+++++.+ .++..+++.++++++|++.++|.++..+......
T Consensus 233 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------ 282 (517)
T PRK08008 233 AMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPS------------------------------ 282 (517)
T ss_pred HHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCc------------------------------
Confidence 556888999999887 6899999999999999999999999877541000
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-CCCCCcCCCccCc
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAAC 472 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ 472 (695)
.. ....+++.+.++ .+++++....|.+.+|+++++.||+||+++.++...+.+ ...+++|.|++++
T Consensus 283 -~~-----------~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~ 349 (517)
T PRK08008 283 -AN-----------DRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCY 349 (517)
T ss_pred -cc-----------cccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCc
Confidence 00 001367777765 478999999999889999999999999986555443332 4567899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCcceEEEeC---CccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeee
Q 005468 473 EIKLVDVPEMNYTSEDQPCPRGEICVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (695)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~GEl~v~g---~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (695)
+++|+| +++..++.|+ .|||+++| ++++.|||++++.|.+.|..+|||+|||+|++|+||.++++||.||+||
T Consensus 350 ~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~ 425 (517)
T PRK08008 350 EAEIRD-DHNRPLPAGE---IGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIK 425 (517)
T ss_pred EEEEEC-CCCCCCCCCC---cceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEE
Confidence 999999 5667777776 89999998 6899999999999999998899999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005468 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLAD 626 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 626 (695)
+ +|++|+|.+||+++.+||.|.+++|+|.++ ++.++++|+++++. .+. .++
T Consensus 426 ~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~ 479 (517)
T PRK08008 426 R-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGE--------TLS-----------------EEE 479 (517)
T ss_pred e-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCC--------CCC-----------------HHH
Confidence 6 899999999999999999999999999764 35788999987631 111 345
Q ss_pred HHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHH
Q 005468 627 MDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAK 671 (695)
Q Consensus 627 l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~ 671 (695)
|.++++ .+|+.|++|..+++++++| +|++||++|+.|+
T Consensus 480 l~~~~~-~~l~~~~~P~~~~~v~~iP------~t~~gK~~r~~l~ 517 (517)
T PRK08008 480 FFAFCE-QNMAKFKVPSYLEIRKDLP------RNCSGKIIKKNLK 517 (517)
T ss_pred HHHHHH-hhcccccCCcEEEEeccCC------CCCccceehhhcC
Confidence 666665 6799999999999999999 9999999999864
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-66 Score=574.55 Aligned_cols=486 Identities=24% Similarity=0.309 Sum_probs=402.9
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..+.+.|.+.|+++||++|+.+. + +.+||+||+++++++|++|++ .|+++|++|+|+++|+++|+++++|
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la 72 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 46789999999999999999753 2 469999999999999999985 7999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++.+++.++++.+++++++++......+....... ....++.+.+ +.
T Consensus 73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------------~~ 133 (496)
T PRK06839 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS-YVQRVISITS------------------LK 133 (496)
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc-CcceEEEecc------------------hH
Confidence 9999999999999999999999999999999999987665554433221 1222333221 22
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH-H
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ-V 316 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~-~ 316 (695)
++.... ........++++++|+|||||||.||+|+++|.++..........+.+..+|++++.+|++|.+++... +
T Consensus 134 ~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 210 (496)
T PRK06839 134 EIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAF 210 (496)
T ss_pred hhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHH
Confidence 222211 112234456899999999999999999999999987766655555678899999999999999998764 5
Q ss_pred HHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 005468 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (695)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (695)
.++..|+++++.+ .++..+++.++++++|++.++|++++.+.+....
T Consensus 211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------- 258 (496)
T PRK06839 211 PTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKF-------------------------------- 258 (496)
T ss_pred HHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCccc--------------------------------
Confidence 6889999988866 7999999999999999999999999988652100
Q ss_pred hhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCCCCCcCCCccCcE
Q 005468 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACE 473 (695)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~ 473 (695)
......++|.+++||+++++++.+.+++. |+++++.||+||++..++..... ....+++|+|+++++
T Consensus 259 ----------~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 327 (496)
T PRK06839 259 ----------ETTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCD 327 (496)
T ss_pred ----------ccCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCce
Confidence 00011589999999999999999999886 99999999999998755443322 255789999999999
Q ss_pred EEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCe
Q 005468 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553 (695)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G 553 (695)
++|+|. ++..++.|+ .|||+|+|+.++.||+++++.+...+ .+|||+|||+|++|++|.+++.||.+|+||. +|
T Consensus 328 ~~i~d~-~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G 401 (496)
T PRK06839 328 YELIDE-NKNKVEVGE---VGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIIS-GG 401 (496)
T ss_pred EEEECC-CcCCCCCCC---ceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEE-CC
Confidence 999994 445577776 89999999999999999999999888 6899999999999999999999999999995 89
Q ss_pred eeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHH
Q 005468 554 EYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSL 630 (695)
Q Consensus 554 ~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 630 (695)
++|+|.+||+++.++|+|.+++|+|.++ ++.++++|+++++. ... .++|+++
T Consensus 402 ~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~~-----------------~~~l~~~ 456 (496)
T PRK06839 402 ENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSS--------VLI-----------------EKDVIEH 456 (496)
T ss_pred EEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCC--------CCC-----------------HHHHHHH
Confidence 9999999999999999999999999654 45789999987631 011 2455666
Q ss_pred HHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 631 GREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 631 ~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
++ ..|+.|++|..|++++++| +|++||++|++|+++.++
T Consensus 457 ~~-~~l~~~~~P~~~~~v~~~P------~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 457 CR-LFLAKYKIPKEIVFLKELP------KNATGKIQKAQLVNQLKS 495 (496)
T ss_pred HH-hhCcCCCCCcEEEEeccCC------CCccccccHHHHHHHhhc
Confidence 65 6899999999999999999 999999999999987653
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=575.37 Aligned_cols=506 Identities=22% Similarity=0.287 Sum_probs=410.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.++.++|+..++++|++.++.++ .+ ++++.+||.||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~--~~---~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~ 84 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRR--VE---GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV 84 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEee--cc---CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 47899999999999999888754 12 23467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (695)
+++|++++|+++.++++++.++++.+++++++++.+..+.+.+.......++.++.+++... .. .....+.++++
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~ 159 (539)
T PRK07008 85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAH-LP----AGSTPLLCYET 159 (539)
T ss_pred HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCc-cc----cCCcccccHHH
Confidence 99999999999999999999999999999999998777666655555556666666554321 11 11233567777
Q ss_pred HHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHH--hhccccccCCCcEEEEeCChhhHHHHHHHH
Q 005468 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA--GATLGTKFYPSDVYISYLPLAHIYERANQV 316 (695)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~--~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (695)
+...... ........++++++++|||||||.||||++||++++.... .....+++.++|++++.+|++|.+++...+
T Consensus 160 l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 238 (539)
T PRK07008 160 LVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPY 238 (539)
T ss_pred HhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHH
Confidence 7644322 1122345678899999999999999999999999865432 233457788899999999999998877777
Q ss_pred HHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCC
Q 005468 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (695)
Q Consensus 317 ~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~ 394 (695)
.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+......
T Consensus 239 ~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------- 289 (539)
T PRK07008 239 SAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG----------------------------- 289 (539)
T ss_pred HHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC-----------------------------
Confidence 7899999999875 689999999999999999999999988875321100
Q ss_pred chhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----------CCCC
Q 005468 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLSG 463 (695)
Q Consensus 395 ~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~ 463 (695)
...+++|.+++||+++++++.+.+.+.+|+++++.||+||++..++...... ....
T Consensus 290 -------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (539)
T PRK07008 290 -------------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLE 356 (539)
T ss_pred -------------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcc
Confidence 0015899999999999999999999989999999999999986554332110 1246
Q ss_pred CcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEec
Q 005468 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (695)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (695)
++|.|+|+++++|+| +++..++.+.. ..|||+++|++++.|||++++ ..+ .+|||+|||+|++|+||+++++||
T Consensus 357 ~~G~p~pg~~~~i~d-~~~~~~~~~~~-~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~GR 430 (539)
T PRK07008 357 KQGRVIYGVDMKIVG-DDGRELPWDGK-AFGDLQVRGPWVIDRYFRGDA---SPL-VDGWFPTGDVATIDADGFMQITDR 430 (539)
T ss_pred cCCccccceEEEEEC-CCCCccCCCCC-cceEEEEeCCccchhhcCChh---hhh-cCCCcccCceEEEcCCCcEEEeec
Confidence 799999999999999 45555543321 269999999999999999984 334 479999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005468 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRAR 620 (695)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (695)
+||+||. +|++|+|.+||+++.++|.|.+++|++.++ ++.++++|+..++. .+
T Consensus 431 ~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~--------------- 486 (539)
T PRK07008 431 SKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGA--------EV--------------- 486 (539)
T ss_pred ccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCC--------cc---------------
Confidence 9999995 899999999999999999999999999664 35678888776531 01
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 621 AAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 621 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
..++|+++++ ++|+.|++|+.|++++++| +|++||++|++|++.+.+
T Consensus 487 --~~~~l~~~~~-~~l~~~~~P~~i~~v~~lP------~t~sgKi~r~~l~~~~~~ 533 (539)
T PRK07008 487 --TREELLAFYE-GKVAKWWIPDDVVFVDAIP------HTATGKLQKLKLREQFRD 533 (539)
T ss_pred --CHHHHHHHHH-hhcccccCCeEEEEecCCC------CCCccceeHHHHHHHHHh
Confidence 1345666665 6899999999999999999 999999999999988775
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-66 Score=576.74 Aligned_cols=499 Identities=21% Similarity=0.265 Sum_probs=408.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..+|+.++|...++++||++|+.+. + +.+||+||.+++.++|..|++.|+++|++|+|+++|+++++++++
T Consensus 5 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l 75 (528)
T PRK07470 5 RVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF 75 (528)
T ss_pred cCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999999763 2 358999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|++++|+++.++.+++.++++.++++.++++......+............++.++... ...++
T Consensus 76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 143 (528)
T PRK07470 76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR------------AGLDY 143 (528)
T ss_pred HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc------------ccccH
Confidence 999999999999999999999999999999999999876555544433334445555554321 12356
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc--cccCCCcEEEEeCChhhHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~~ 314 (695)
.++...............++++++|+|||||||.||+|+++|+++...+...... .++..+|+++.++|++|.+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 223 (528)
T PRK07470 144 EALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ 223 (528)
T ss_pred HHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH
Confidence 6665433222222334567899999999999999999999999997655432221 24678899999999999999875
Q ss_pred HHHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCC
Q 005468 315 QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (695)
Q Consensus 315 ~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (695)
.+ .++.|++.++++ .++..+++.|+++++|++.++|++++.+.+....
T Consensus 224 ~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 274 (528)
T PRK07470 224 LC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV---------------------------- 274 (528)
T ss_pred HH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc----------------------------
Confidence 44 567777776664 5889999999999999999999999887652100
Q ss_pred CCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--------CCCCC
Q 005468 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--------DNLSG 463 (695)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--------~~~~~ 463 (695)
.....+++|.+++||+++++...+++.+.+|.++++.||+||+++.++..... ....+
T Consensus 275 --------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~ 340 (528)
T PRK07470 275 --------------DRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIG 340 (528)
T ss_pred --------------CCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceee
Confidence 00111589999999999999999999888899999999999998765543221 23457
Q ss_pred CcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEec
Q 005468 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (695)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (695)
++|.|+++++++++| +++..++.|+ .|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||++++.||
T Consensus 341 ~~G~~~~g~~~~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR 415 (528)
T PRK07470 341 TCGFERTGMEVQIQD-DEGRELPPGE---TGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGR 415 (528)
T ss_pred ccCcccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCC
Confidence 899999999999999 5667777776 89999999999999999999999888 689999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005468 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRAR 620 (695)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (695)
.||+||+ +|++|+|.+||+++.++|.|.+|+|+|.++ ++.+++++++.++. ..+
T Consensus 416 ~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~-------------- 472 (528)
T PRK07470 416 ASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGA--------PVD-------------- 472 (528)
T ss_pred ccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCC--------CCC--------------
Confidence 9999996 899999999999999999999999999754 35678888876531 011
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 621 AAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 621 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.++++++++ +.|+.|++|..+++++++| +|++||++|+.|++++++.
T Consensus 473 ---~~~~~~~l~-~~l~~~~~P~~~~~~~~iP------~t~~GKi~r~~l~~~~~~~ 519 (528)
T PRK07470 473 ---EAELLAWLD-GKVARYKLPKRFFFWDALP------KSGYGKITKKMVREELEER 519 (528)
T ss_pred ---HHHHHHHHH-HhhhcCCCCcEEEEeccCC------CCCcccccHHHHHHHHHhc
Confidence 234555665 6789999999999999999 9999999999999877753
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-66 Score=580.12 Aligned_cols=503 Identities=25% Similarity=0.338 Sum_probs=420.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
.-+|+.+.|..+++.+|+++|+.+. +. .+||.||.+++.++|++|.+.|+++|++|+|+++|+++|+++++
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~~---~~------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~ 85 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRFL---GN------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL 85 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999764 33 49999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|++++|+++.++.+++.++++++++++++++......+.......+.++.++.+++... ....++
T Consensus 86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 155 (542)
T PRK07786 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD----------DSVLGY 155 (542)
T ss_pred HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc----------ccccCH
Confidence 9999999999999999999999999999999999998776665544444455666666553210 122456
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcccccc-CCCcEEEEeCChhhHHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF-YPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~~~~~~ 315 (695)
+++....... .+......+++++++|||||||.||||++||+++...+......+++ ..++++++.+|++|.+|+...
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~ 234 (542)
T PRK07786 156 EDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSM 234 (542)
T ss_pred HHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHH
Confidence 6665433221 12233456789999999999999999999999998888766665666 578999999999999999878
Q ss_pred HHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
+.++..|+++++.+ +++..+++.|+++++|.++++|+++..+.......
T Consensus 235 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---------------------------- 286 (542)
T PRK07786 235 LPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQAR---------------------------- 286 (542)
T ss_pred HHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccC----------------------------
Confidence 88999999998865 58999999999999999999999999886531100
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC--CCCCCcCCCc
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPN 469 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~ 469 (695)
. ...++|.+++||+++++++.+++.+.+ ++++++.||+||++.+.+.....+ ...+++|.|+
T Consensus 287 ~---------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~ 351 (542)
T PRK07786 287 P---------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVI 351 (542)
T ss_pred c---------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccC
Confidence 0 002699999999999999999999988 788999999999987655433322 4567899999
Q ss_pred cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeee
Q 005468 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (695)
Q Consensus 470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (695)
+++.++|+| +++..++.|. .|||+++|+.++.||+++++.+.+.| .+|||+|||+++++++|.++++||.||+||
T Consensus 352 ~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~ 426 (542)
T PRK07786 352 PTVAARVVD-ENMNDVPVGE---VGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMII 426 (542)
T ss_pred CCceEEEEC-CCCCCCcCCC---ceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEE
Confidence 999999999 6667777675 89999999999999999999999999 689999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005468 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLAD 626 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 626 (695)
+ +|++|+|.+||+++.+||.|.+++|++.++ ++.++++|++.+... . ...++
T Consensus 427 ~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------~---------------~~~~~ 481 (542)
T PRK07786 427 S-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDA---------A---------------LTLED 481 (542)
T ss_pred e-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCC---------C---------------CCHHH
Confidence 6 899999999999999999999999999653 467888888765210 0 01345
Q ss_pred HHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHH
Q 005468 627 MDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 627 l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~ 679 (695)
+.++++ ++++.|++|..+++++++| +|++||++|++|++.|++...
T Consensus 482 l~~~l~-~~l~~~~~P~~i~~v~~iP------~t~~GKv~r~~L~~~~~~~~~ 527 (542)
T PRK07786 482 LAEFLT-DRLARYKHPKALEIVDALP------RNPAGKVLKTELRERYGACVN 527 (542)
T ss_pred HHHHHH-hhccCCCCCCEEEEeccCC------CCCcccccHHHHHHHHHhhhc
Confidence 566665 6899999999999999999 999999999999999987643
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=576.62 Aligned_cols=507 Identities=20% Similarity=0.272 Sum_probs=416.4
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.|+.++|++.++++||++|+.+. ++ +.+||+||.+++.++|++|++.|+++||+|+++++|+++|+++++||
T Consensus 23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~ 94 (547)
T PRK06087 23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC 94 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 58999999999999999999753 33 35899999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccc-----hhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceE
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (695)
+++|++++|+++.++.+++.++++.+++++++++... ...+.......+.++.++.++...... ..
T Consensus 95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 165 (547)
T PRK06087 95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPAT---------SS 165 (547)
T ss_pred HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCc---------Cc
Confidence 9999999999999999999999999999999997532 233333334455566677665432110 11
Q ss_pred eeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHH
Q 005468 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (695)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~ 313 (695)
.++.++....... .......++++++|+|||||||.||+|++||++++.........+++.++|++++.+|++|.+++.
T Consensus 166 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 244 (547)
T PRK06087 166 LSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFL 244 (547)
T ss_pred cCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHH
Confidence 2455554432211 122335678999999999999999999999999988887776667888999999999999999987
Q ss_pred H-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCC
Q 005468 314 N-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (695)
Q Consensus 314 ~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (695)
. .+.+++.|+++++.+ .++..+++.|+++++|+++++|..+..++......
T Consensus 245 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~--------------------------- 297 (547)
T PRK06087 245 HGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ--------------------------- 297 (547)
T ss_pred HHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------------
Confidence 6 556789999998877 78999999999999999998887776665421100
Q ss_pred CCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC--CCCCCcCCCc
Q 005468 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPN 469 (695)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~ 469 (695)
....+++|.+++||+++++++.+.+... |+++++.||+||+++..+...... ...+++|.|+
T Consensus 298 ---------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~ 361 (547)
T PRK06087 298 ---------------PADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAA 361 (547)
T ss_pred ---------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhhcCCcCCccC
Confidence 0011589999999999999999988775 999999999999987665443221 3356789999
Q ss_pred cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeee
Q 005468 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (695)
Q Consensus 470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (695)
++++++++| +++..++.|. .|||+++|+.++.||+++++.+...|+.+|||+|||+|++|++|+++++||.+|+|+
T Consensus 362 ~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~ 437 (547)
T PRK06087 362 AGVEIKVVD-EARKTLPPGC---EGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIV 437 (547)
T ss_pred CCceEEEEc-CCCCCCcCCC---cceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhh
Confidence 999999999 6666777775 899999999999999999999999998899999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005468 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLAD 626 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 626 (695)
. +|++|+|.+||+++.++|+|.+++|+|.++ ++.++++|++++... .. ..++
T Consensus 438 ~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~-------~~-----------------~~~~ 492 (547)
T PRK06087 438 R-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH-------SL-----------------TLEE 492 (547)
T ss_pred c-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC-------CC-----------------CHHH
Confidence 5 899999999999999999999999999653 357888988865210 00 0234
Q ss_pred HHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHH
Q 005468 627 MDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADM 681 (695)
Q Consensus 627 l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~l 681 (695)
+.+++....++.|++|..|.+++++| +|.+||++|++|++.+.+++.+-
T Consensus 493 ~~~~~~~~~l~~~~~P~~i~~v~~iP------~t~sGK~~r~~l~~~~~~~~~~~ 541 (547)
T PRK06087 493 VVAFFSRKRVAKYKYPEHIVVIDKLP------RTASGKIQKFLLRKDIMRRLTQD 541 (547)
T ss_pred HHHHHHhccccccCCCeEEEEeccCC------CCCCCcCcHHHHHHHHHHHhhhh
Confidence 45554446899999999999999999 99999999999999998887553
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=642.01 Aligned_cols=539 Identities=16% Similarity=0.159 Sum_probs=406.9
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.++.++|.++++++||++|+.+...........+.+||+||.++++++|++|.+.|+++|++|+|+++|+++|++++|||
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~ 315 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV 315 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 58999999999999999999864100000123467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccc---hhHHHhcccC----CCCceEEEEECCCCCCCCCCCcCCCc
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---LNSLLSCLSE----VPTVRLIVVIGGIDDQIPSLPITTGV 231 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---~~~~~~~~~~----~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (695)
+++|+++||++|.++.+++.+++++++++++|++... ...+...... ...+..+...+.... ......
T Consensus 316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---- 390 (1389)
T TIGR03443 316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSL-VGGSLE---- 390 (1389)
T ss_pred HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccc-cccccc----
Confidence 9999999999999999999999999999999987542 1111111100 001111111111000 000000
Q ss_pred eEeeHHHHHhccc--cCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhH
Q 005468 232 QILTYSNLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (695)
Q Consensus 232 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 309 (695)
....+...... ..........++++++|+|||||||.||||+++|+++++.+.+....+++.++|++++++|++|+
T Consensus 391 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 468 (1389)
T TIGR03443 391 --GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHD 468 (1389)
T ss_pred --cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceec
Confidence 00000000000 00011223467899999999999999999999999999998888777889999999999999999
Q ss_pred HHHHHHHHHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 005468 310 YERANQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (695)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (695)
.++..++.+|+.|+++++.+ .++..+++.|+++++|+++++|++++.+.....
T Consensus 469 ~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~----------------------- 525 (1389)
T TIGR03443 469 PIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT----------------------- 525 (1389)
T ss_pred chHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc-----------------------
Confidence 99888899999999999876 367889999999999999999999987753100
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC-----
Q 005468 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD----- 459 (695)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~----- 459 (695)
...+++|.+++||+++++...+.+...+ +++++|+||+||++..++......
T Consensus 526 ----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 583 (1389)
T TIGR03443 526 ----------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDS 583 (1389)
T ss_pred ----------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEcccccccc
Confidence 0014899999999999999999888765 788999999999987655432211
Q ss_pred ------CCCCCcCCCccCcEEEEeecCC-CCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC-------------
Q 005468 460 ------NLSGHVGSPNAACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------------- 519 (695)
Q Consensus 460 ------~~~~~vG~p~~~~~v~i~d~~~-~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~------------- 519 (695)
....++|+|+++++++|+|.++ ...++.|. .|||||+|+++++||+++|+.|+++|.
T Consensus 584 ~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~---~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~ 660 (1389)
T TIGR03443 584 TFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGE---VGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDL 660 (1389)
T ss_pred chhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCC---ceEEEecccccchhcCCChhHhhhhccCCcccCccccccc
Confidence 1246799999999999999544 35566676 899999999999999999999999883
Q ss_pred ---------------CCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---
Q 005468 520 ---------------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--- 581 (695)
Q Consensus 520 ---------------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~--- 581 (695)
.+|||+|||+|++++||.|+|+||+||+||+ +|++|+|.|||++|.+||.|.+++|++..+
T Consensus 661 ~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~ 739 (1389)
T TIGR03443 661 DKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENVTLVRRDKDE 739 (1389)
T ss_pred ccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeEEEEeeCCCC
Confidence 2589999999999999999999999999997 999999999999999999999999877432
Q ss_pred CCeEEEEEEeCHHH--HHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCcc
Q 005468 582 NSALVAIVSVDQDA--LKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLL 659 (695)
Q Consensus 582 ~~~~va~vv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~ 659 (695)
+..++|+|++..+. ...+....... ......+..........++|+++++ ++||.|++|..|++++++| +
T Consensus 740 ~~~lva~vv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~-~~Lp~y~~P~~~~~~~~lP------~ 811 (1389)
T TIGR03443 740 EPTLVSYIVPQDKSDELEEFKSEVDDE-ESSDPVVKGLIKYRKLIKDIREYLK-KKLPSYAIPTVIVPLKKLP------L 811 (1389)
T ss_pred CeEEEEEEeccCccccccccccccccc-cccccchhhhhhhhhhHHHHHHHHH-hhCCcccCCceEEEcccCC------C
Confidence 46899999987321 00000000000 0000001111112234567777776 7899999999999999999 9
Q ss_pred CccccCChHHHHHHHHHHHHHH
Q 005468 660 TPTFKIKRPQAKQYFAKAIADM 681 (695)
Q Consensus 660 t~~gKi~R~~l~~~~~~~i~~l 681 (695)
|++|||+|++|++.+..+++.+
T Consensus 812 t~~GKidr~~L~~~~~~~~~~~ 833 (1389)
T TIGR03443 812 NPNGKVDKPALPFPDTAQLAAV 833 (1389)
T ss_pred CCCccccHhhcCCCchhhhhhh
Confidence 9999999999987665555543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-66 Score=585.13 Aligned_cols=504 Identities=18% Similarity=0.229 Sum_probs=384.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
++..|+.++|.++++++|+++|+.+....+...+.++.+||+||.+++.++|++|.+. +++||+|+|+++|+++|++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~ 109 (612)
T PRK12476 31 PPGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGF 109 (612)
T ss_pred CccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHH
Confidence 3457899999999999999999987510011123456799999999999999999987 999999999999999999999
Q ss_pred HHHHhcCCeEEec-cCCCC--HHHHHHHHHhccccEEEecccchhHHHhcccCCCC--ceEEEEECCCCCCCCCCCcCCC
Q 005468 156 HACSAYSFISVPL-YDTLG--PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPITTG 230 (695)
Q Consensus 156 lA~~~~G~v~vpl-~~~~~--~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--l~~ii~~~~~~~~~~~~~~~~~ 230 (695)
+||+++|++++|+ ++.++ .+++.+++++++++++|++......+......++. ...++.+++...
T Consensus 110 lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------- 179 (612)
T PRK12476 110 FAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD---------- 179 (612)
T ss_pred HHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc----------
Confidence 9999999999999 56666 78999999999999999988766655443322221 123444432110
Q ss_pred ceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccc-cCCCcEEEEeCChhhH
Q 005468 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-FYPSDVYISYLPLAHI 309 (695)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~pl~h~ 309 (695)
.. ..........++++++|+|||||||.||||++||+++.+.+......+. +.+++++++++|++|.
T Consensus 180 -----------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~ 247 (612)
T PRK12476 180 -----------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHD 247 (612)
T ss_pred -----------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccc
Confidence 00 0011122346789999999999999999999999999887766555566 7889999999999999
Q ss_pred HHHHHHHHHHHcCcEEeEec-----CChhhHHHHHH--hcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 005468 310 YERANQVMTVYSGVAVGFYQ-----GDNMKLMDDMA--ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNA 382 (695)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~-----~~~~~l~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 382 (695)
+++...+.+++.|+++++.. .++..+++.++ ++++|+++++|+++..+....... .
T Consensus 248 ~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~--~--------------- 310 (612)
T PRK12476 248 MGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLP--A--------------- 310 (612)
T ss_pred cchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcCh--h---------------
Confidence 99987666655666665543 27889999994 589999999999988776420000 0
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh---CC---ccccccccccccccccccC
Q 005468 383 KKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---GG---RVTEGYGMTETSCLISQLD 456 (695)
Q Consensus 383 k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~---g~---~v~~~YG~TE~~~~~~~~~ 456 (695)
.. ..+ ..+++| +++||+++++++.+.|.+.| |+ .+++.||+||++..++...
T Consensus 311 ------~~----~~~-----------~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~ 368 (612)
T PRK12476 311 ------EG----DDI-----------DLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIA 368 (612)
T ss_pred ------hh----cCc-----------chhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccC
Confidence 00 000 014789 99999999999999999887 54 4899999999876544332
Q ss_pred CCC---------------------------CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccC
Q 005468 457 EGD---------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK 509 (695)
Q Consensus 457 ~~~---------------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~ 509 (695)
+.. ...+++|+|+++++++|+|.+++..++.|+ .||||++|++++.|||+
T Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~~ 445 (612)
T PRK12476 369 PDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGE---VGEIWLHGDNIGRGYWG 445 (612)
T ss_pred CCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCC---EEEEEEcCCcccccccC
Confidence 211 123589999999999999955477777776 89999999999999999
Q ss_pred ChhhhhcccC------------------CCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhc-CcC
Q 005468 510 DEIQTKEVID------------------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK-CKF 570 (695)
Q Consensus 510 ~~~~t~~~~~------------------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~-~p~ 570 (695)
+|+.|++.|. .++||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.|||+++.+ ||.
T Consensus 446 ~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~eIE~~l~~~~p~ 523 (612)
T PRK12476 446 RPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQDIEATVAEASPM 523 (612)
T ss_pred ChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHHHHHHHHHhccc
Confidence 9999999884 13599999999985 9999999999999997 8999999999999985 899
Q ss_pred cce--EEEEeeCC--CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcce-eeEE
Q 005468 571 VGQ--CFVYGDSF--NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEF-VKAV 645 (695)
Q Consensus 571 V~~--~~V~g~~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~-p~~i 645 (695)
|.+ ++|++.++ ++.++++|++.++... . +. +.+.+.+++.+. ..|++ |+.+
T Consensus 524 V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~-------~---------~~----~~l~~~~~~~l~----~~~~~~p~~v 579 (612)
T PRK12476 524 VRRGYVTAFTVPAEDNERLVIVAERAAGTSR-------A---------DP----APAIDAIRAAVS----RRHGLAVADV 579 (612)
T ss_pred ccCCcEEEEEecCCCcceEEEEEEecCCccc-------c---------cH----HHHHHHHHHHHH----HhhCCcceEE
Confidence 999 66777543 4688888887653100 0 01 122333333332 13556 6788
Q ss_pred EEee--cCCCCCCCccCccccCChHHHHHHHHH
Q 005468 646 TLVL--EPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 646 ~~~~--~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.+++ ++| +|++|||+|++|++.|.+
T Consensus 580 ~~v~~~~lP------~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 580 RLVPAGAIP------RTTSGKLARRACRAQYLD 606 (612)
T ss_pred EEECCCCcC------cCCchHHHHHHHHHHHHc
Confidence 8887 599 999999999999998764
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=573.28 Aligned_cols=505 Identities=26% Similarity=0.357 Sum_probs=418.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..|+.++|...++++||++|+.+. + +.+||+||.+++.++|..|.+.|+++||+|+++++|+++|+++++|
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a 80 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA 80 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999864 3 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++.+++.++++.++++++|++......+.+....... ..+....... ..........+.
T Consensus 81 ~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~ 153 (523)
T PRK08316 81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV-DTLILSLVLG------GREAPGGWLDFA 153 (523)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc-cceeeeeccc------ccccccchhhHH
Confidence 999999999999999999999999999999999998877766554333221 1111111100 001112234555
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHH-
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV- 316 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~- 316 (695)
++...... .........+++++++|||||||.||+|.+||++++..+......+++.++|++++.+|++|.+++...+
T Consensus 154 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~ 232 (523)
T PRK08316 154 DWAEAGSV-AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLG 232 (523)
T ss_pred HHHhcCCC-ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHH
Confidence 55443322 1123445678999999999999999999999999998877776677889999999999999999987644
Q ss_pred HHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 005468 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (695)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (695)
.++..|+++++.+ .++..+++.++++++|++.++|+++..+.+....
T Consensus 233 ~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------- 280 (523)
T PRK08316 233 PYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF-------------------------------- 280 (523)
T ss_pred HHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc--------------------------------
Confidence 4688999999985 7999999999999999999999999887652100
Q ss_pred hhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC--CCCCCcCCCccCc
Q 005468 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNAAC 472 (695)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~ 472 (695)
+....+++|.+++||++++.++.+.+++.+ ++++++.||+||++.+++...+.+ ...+++|+|++++
T Consensus 281 ----------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~ 350 (523)
T PRK08316 281 ----------DTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNV 350 (523)
T ss_pred ----------ccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCc
Confidence 000114899999999999999999999988 789999999999987766544332 4568899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCC
Q 005468 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (695)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~ 552 (695)
+++|+| +++..++.|+ .|||+++|++++.||+++++.+.+.| .+|||+|||+|++++||.++++||.||+||+ +
T Consensus 351 ~~~i~~-~~~~~~~~g~---~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~-~ 424 (523)
T PRK08316 351 ETRVVD-DDGNDVAPGE---VGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKT-G 424 (523)
T ss_pred EEEEEc-CCCCCCCCCC---cceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEe-C
Confidence 999999 5566667776 89999999999999999999999998 7899999999999999999999999999997 8
Q ss_pred eeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
|++|+|.+||+.+.++++|.+++|++.++ .+.++++++++++. ... .+.+.+
T Consensus 425 G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~l~~ 479 (523)
T PRK08316 425 GENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGA--------TVT-----------------EDELIA 479 (523)
T ss_pred CeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCC--------CCC-----------------HHHHHH
Confidence 99999999999999999999999999653 45788899887631 000 233444
Q ss_pred HHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHH
Q 005468 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~ 679 (695)
.++ .+|+.|++|..+++++++| +|++||++|++|+++|++.++
T Consensus 480 ~~~-~~l~~~~~p~~i~~v~~~p------~t~~gKi~r~~l~~~~~~~~~ 522 (523)
T PRK08316 480 HCR-ARLAGFKVPKRVIFVDELP------RNPSGKILKRELRERYAGAFT 522 (523)
T ss_pred HHH-HhcccCCCCcEEEEecCCC------CCCccceeHHHHHHHHHhhcc
Confidence 554 6789999999999999999 999999999999999998765
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=569.16 Aligned_cols=495 Identities=25% Similarity=0.338 Sum_probs=410.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.++.++|..++ .+|++.|+... ++ +.+||.||.+++.++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~ 73 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLAT 73 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57899999999 99999999753 33 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (695)
+++|++++|+++.++.+++..+++.+++++++++......+....... ....++.++.... ..+.+
T Consensus 74 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------~~~~~ 139 (504)
T PRK07514 74 LRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGT-------------GSLLE 139 (504)
T ss_pred HHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCc-------------ccHHH
Confidence 999999999999999999999999999999999987766655443222 2333444443211 11122
Q ss_pred HHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-HHH
Q 005468 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVM 317 (695)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~ 317 (695)
....... ........++++++|+|||||||.||+|++||+++...+......+++.++|++++.+|++|.+++.. .+.
T Consensus 140 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 218 (504)
T PRK07514 140 AAAAAPD-DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNV 218 (504)
T ss_pred hhhhcCc-ccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHH
Confidence 2111111 11223456789999999999999999999999999998877766678889999999999999999876 556
Q ss_pred HHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCch
Q 005468 318 TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (695)
Q Consensus 318 ~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~ 396 (695)
+++.|+++++.+ .++..+++.+ .++|++.++|.++.+++....
T Consensus 219 ~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~---------------------------------- 262 (504)
T PRK07514 219 ALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR---------------------------------- 262 (504)
T ss_pred HHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC----------------------------------
Confidence 899999999877 6889999988 479999999999988765200
Q ss_pred hHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEE
Q 005468 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKL 476 (695)
Q Consensus 397 ~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i 476 (695)
......+++|.+++||+++++++.+.|.+.+++++++.||+||++..++.........+++|.|+++++++|
T Consensus 263 --------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i 334 (504)
T PRK07514 263 --------LTREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRV 334 (504)
T ss_pred --------CCcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccccccCcccccCCCCcEEEE
Confidence 000111589999999999999999999999999999999999998655543333345678999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeee
Q 005468 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (695)
Q Consensus 477 ~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v 556 (695)
+|++++..++.|+ .|||+|+|++++.||+++++.+++.|..+|||+|||+|+++++|.++++||+||+||+ +|++|
T Consensus 335 ~d~~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i 410 (504)
T PRK07514 335 TDPETGAELPPGE---IGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNV 410 (504)
T ss_pred EECCCCCCCCCCC---ceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEe-CCeEE
Confidence 9977777777776 8999999999999999999999999988999999999999999999999999999996 89999
Q ss_pred chHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHh
Q 005468 557 AAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGRE 633 (695)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 633 (695)
+|.+||+++.++++|.+++|++.++ ++.+++++++.+.. ... .+++++.++
T Consensus 411 ~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~-----------------~~~l~~~~~- 464 (504)
T PRK07514 411 YPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGA--------ALD-----------------EAAILAALK- 464 (504)
T ss_pred CHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCC--------CCC-----------------HHHHHHHHH-
Confidence 9999999999999999999999654 45788999887531 011 234555554
Q ss_pred cCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 634 AQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 634 ~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
++|+.|++|..|++++++| +|++||++|++|+++|++.
T Consensus 465 ~~l~~~~~p~~i~~v~~~p------~t~~gK~~r~~l~~~~~~~ 502 (504)
T PRK07514 465 GRLARFKQPKRVFFVDELP------RNTMGKVQKNLLREQYADL 502 (504)
T ss_pred hhcccCCCCcEEEEeccCC------CCCCcceeHHHHHHHHHhh
Confidence 6799999999999999999 9999999999999888754
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=577.71 Aligned_cols=506 Identities=24% Similarity=0.361 Sum_probs=400.3
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChhHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
.+++.++|.++++++|+++|+... + +.+||.||.++++++|++|.+. |+++||+|+|+++|+++|+++++
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l 93 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF 93 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999753 2 3599999999999999999985 99999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEEC--CCCCCCCC----------
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIG--GIDDQIPS---------- 224 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~--~~~~~~~~---------- 224 (695)
||+++|++++|+++.++.+++.+++++++++++++++.....+....... ....++... +.......
T Consensus 94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (562)
T PRK12492 94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDLLPAAKGWLVNTVVDKV 172 (562)
T ss_pred HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhccccccchhcccccccc
Confidence 99999999999999999999999999999999999876544443322221 111111110 00000000
Q ss_pred ---CCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccc--------
Q 005468 225 ---LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-------- 293 (695)
Q Consensus 225 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-------- 293 (695)
..........+|+++...+............+++++|+|||||||.||||+++|+++...+......+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~ 252 (562)
T PRK12492 173 KKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQP 252 (562)
T ss_pred cccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccc
Confidence 000000122456666544332222233456789999999999999999999999999877655433221
Q ss_pred -cCC-CcEEEEeCChhhHHHHHHH-HHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcc
Q 005468 294 -FYP-SDVYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368 (695)
Q Consensus 294 -~~~-~d~~l~~~pl~h~~~~~~~-~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 368 (695)
+.. .+++++.+|++|.+++... +..+..|++.++.. .++..+++.|+++++|++.++|+++..+......
T Consensus 253 ~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----- 327 (562)
T PRK12492 253 LMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGF----- 327 (562)
T ss_pred cccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCc-----
Confidence 223 3578899999999998764 44677888776654 5888999999999999999999999887652100
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccc
Q 005468 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET 448 (695)
Q Consensus 369 ~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~ 448 (695)
.....+++|.+++||+++++++.+.|.+.+|++++++||+||+
T Consensus 328 -------------------------------------~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 370 (562)
T PRK12492 328 -------------------------------------KDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTET 370 (562)
T ss_pred -------------------------------------ccccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCcccc
Confidence 0001148999999999999999999999889999999999999
Q ss_pred cccccccCCCC-CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecc
Q 005468 449 SCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527 (695)
Q Consensus 449 ~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TG 527 (695)
+++++...... ...+++|.|+++++++|+| +++..++.|+ .|||+|+|+.++.|||++++.|.+.|+.+|||+||
T Consensus 371 ~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG 446 (562)
T PRK12492 371 SPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELPLGE---RGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG 446 (562)
T ss_pred CceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCCCCC---ceEEEEeCCccccccccCchhhhhcccCCCceecC
Confidence 87666544332 3457899999999999999 5667777776 89999999999999999999999999878999999
Q ss_pred cEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcC
Q 005468 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEG 604 (695)
Q Consensus 528 Dlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~ 604 (695)
|+|++|++|.++|.||.||+||+ +|++|+|.+||+++.+||.|.+++|++.++ ++.+++++++.+..
T Consensus 447 D~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------- 516 (562)
T PRK12492 447 DIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPG--------- 516 (562)
T ss_pred cEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC---------
Confidence 99999999999999999999997 799999999999999999999999999653 35788888875421
Q ss_pred CCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHH
Q 005468 605 IQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQY 673 (695)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~ 673 (695)
.. .++++++++ ++|+.|++|..+.+++++| +|++||++|++|++.
T Consensus 517 ~~-----------------~~~i~~~~~-~~l~~~~~P~~i~~~~~~P------~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 517 LS-----------------VEELKAYCK-ENFTGYKVPKHIVLRDSLP------MTPVGKILRRELRDI 561 (562)
T ss_pred CC-----------------HHHHHHHHH-HhcccccCCcEEEEeccCC------CCCCCceeHHHHHhh
Confidence 11 345666665 6799999999999999999 999999999999864
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=571.61 Aligned_cols=497 Identities=22% Similarity=0.290 Sum_probs=413.1
Q ss_pred CHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHH
Q 005468 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (695)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (695)
+++++|...++++|+++|+.+. + +++||+||.+++.++|++|++.|+++|++|+|+++|+++|+++++||+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 71 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA 71 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4788999999999999999764 2 359999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHH
Q 005468 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (695)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (695)
++|++++|+++.++.+++..+++.++++++|++......+......++.+..++.+++..... ........|+++
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 146 (515)
T TIGR03098 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHAS-----EGGGESPSWPKL 146 (515)
T ss_pred hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCccccc-----CCccccccHHHh
Confidence 999999999999999999999999999999999877666655555555566666665432111 112233456666
Q ss_pred HhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHHH
Q 005468 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319 (695)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l 319 (695)
...... ....+...+++++|+|||||||.||||++||+++...+......+.+..+|++++.+|++|.+++...+.++
T Consensus 147 ~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 224 (515)
T TIGR03098 147 LALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAF 224 (515)
T ss_pred hccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHH
Confidence 543321 122334568999999999999999999999999998888777777888999999999999999998888899
Q ss_pred HcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhH
Q 005468 320 YSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWD 398 (695)
Q Consensus 320 ~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d 398 (695)
..|+++++.+ .++..+++.++++++|++.++|+++..+.+...
T Consensus 225 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------------ 268 (515)
T TIGR03098 225 YVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW------------------------------------ 268 (515)
T ss_pred HcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc------------------------------------
Confidence 9999999877 689999999999999999999999988754100
Q ss_pred HHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCC-CCCCCCCcCCCccCcEEEE
Q 005468 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKL 476 (695)
Q Consensus 399 ~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~~v~i 476 (695)
......++|.+++||+++++++.+.+++.+ ++.+++.||+||++........ .....+++|+|+++++++|
T Consensus 269 -------~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i 341 (515)
T TIGR03098 269 -------PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLV 341 (515)
T ss_pred -------CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEE
Confidence 000115899999999999999999999988 6889999999998765443322 1356789999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCC-----------CCeeecccEEEEecCCcEEEEecCC
Q 005468 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-----------DGWFHTGDIGMWIPGGRLKIIDRKK 545 (695)
Q Consensus 477 ~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~-----------~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (695)
++ +++..++.++ .|||+++|+.++.|||++++.|.+.|.. ++||+|||+|++|+||++++.||.|
T Consensus 342 ~~-~~~~~~~~~~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~ 417 (515)
T TIGR03098 342 LR-EDGSECAPGE---EGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRD 417 (515)
T ss_pred EC-CCCCCCCCCC---ceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccc
Confidence 99 5566666665 8999999999999999999998877643 3489999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005468 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAA 622 (695)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (695)
|+||+ +|++|+|++||+++.++|.|.+++|++.++ ++.+++++++.+.. ..+
T Consensus 418 d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~--------~~~---------------- 472 (515)
T TIGR03098 418 EMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGE--------ELD---------------- 472 (515)
T ss_pred cceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCC--------CCC----------------
Confidence 99997 899999999999999999999999999653 46788888764421 011
Q ss_pred HHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 623 VLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 623 i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
.++|+++++ ++|+.+++|..+++++++| +|++||++|++|++
T Consensus 473 -~~~l~~~l~-~~l~~~~~p~~i~~v~~iP------~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 473 -RAALLAECR-ARLPNYMVPALIHVRQALP------RNANGKIDRKALAA 514 (515)
T ss_pred -HHHHHHHHH-hhCccccCCCEEEEeccCC------CCCCCCCcHHHhcc
Confidence 345566665 6899999999999999999 99999999999874
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=584.48 Aligned_cols=515 Identities=17% Similarity=0.135 Sum_probs=392.1
Q ss_pred HHHHHHHHHhcCCCccEEEEeeecCc--cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHH
Q 005468 82 HDNFVRAVDTFRDYKYLGTRVRVDGT--VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (695)
Q Consensus 82 ~~~l~~~a~~~pd~~al~~~~~~d~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (695)
...|.+++.++||++|+.+. +.. .++.+.+||+||.+++.++|++|+++|+++||+|+|+++|++|+++++|||+
T Consensus 178 ~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~ 254 (728)
T PLN03052 178 ECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAII 254 (728)
T ss_pred HHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 34566665678999999886 321 2346789999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch------hHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceE
Q 005468 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL------NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (695)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (695)
++|++++|+++.++++++.+++++++++++|+++... +.......... ..++++........... ....
T Consensus 255 ~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~~~~~---~~~~ 329 (728)
T PLN03052 255 LAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSVRVKL---REGD 329 (728)
T ss_pred HcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcccccc---ccCC
Confidence 9999999999999999999999999999999986432 11111111111 12333322111000000 0012
Q ss_pred eeHHHHHhccccC----CCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhH
Q 005468 234 LTYSNLLSQGRSN----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (695)
Q Consensus 234 ~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 309 (695)
.+|++++...... ..+.....++++++|+|||||||.||||+++|++++..+......+++.++|+++++.|+.|+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~ 409 (728)
T PLN03052 330 MSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWM 409 (728)
T ss_pred ccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHH
Confidence 4677776542110 111112356899999999999999999999999987766555555778899999999999999
Q ss_pred HHHHHHHHHHHcCcEEeEecC--ChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005468 310 YERANQVMTVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (695)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~~--~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~ 387 (695)
++....+.+|+.|++++++++ +...+++.++++++|++.++|+++..+.+.-.
T Consensus 410 ~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~------------------------- 464 (728)
T PLN03052 410 MGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC------------------------- 464 (728)
T ss_pred hHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC-------------------------
Confidence 998777789999999999874 55789999999999999999999988754200
Q ss_pred hcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCC-CCCCCCCc
Q 005468 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDE-GDNLSGHV 465 (695)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~-~~~~~~~v 465 (695)
..-+| .++||.+++||++++++...++.+.++ .++.+.||+||+++.+....+ .....+++
T Consensus 465 ------~~~~d-----------lssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~ 527 (728)
T PLN03052 465 ------MAGLD-----------WSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAF 527 (728)
T ss_pred ------cccCC-----------hhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCcc
Confidence 00001 158999999999999999888887766 579999999999765443322 22456889
Q ss_pred CCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCc--cchhccCChhhhhcccC------CCCeeecccEEEEecCCc
Q 005468 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPL--IFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGR 537 (695)
Q Consensus 466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~--v~~gY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~ 537 (695)
|.|.+|++++|+| ++++.++.|.+ ..|||+++++. ...+|+++. .+...|. .+.||+|||+|++|+||+
T Consensus 528 g~p~~g~~v~v~d-~~g~~v~~g~~-~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~ 604 (728)
T PLN03052 528 STPAMGCKLFILD-DSGNPYPDDAP-CTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGY 604 (728)
T ss_pred ccCCCCceEEEEC-CCCCCCCCCCC-ceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCe
Confidence 9999999999999 66666666542 16999998653 335677664 3333332 223999999999999999
Q ss_pred EEEEecCCCeeecCCeeeechHHHHHHHh-cCcCcceEEEEeeCC---C-CeEEEEEEeC--HHHHHHHHHHcCCCcccH
Q 005468 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYA-KCKFVGQCFVYGDSF---N-SALVAIVSVD--QDALKAWAASEGIQYENL 610 (695)
Q Consensus 538 l~i~GR~~d~ikl~~G~~v~p~~IE~~l~-~~p~V~~~~V~g~~~---~-~~~va~vv~~--~~~~~~~~~~~~~~~~~~ 610 (695)
++|+||.||+||+ +|++|+|.|||+++. .||.|.+++|+|.++ + +.++++|++. ++. .
T Consensus 605 l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~----------~---- 669 (728)
T PLN03052 605 YRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGS----------N---- 669 (728)
T ss_pred EEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCC----------C----
Confidence 9999999999996 899999999999995 899999999999653 2 5789999986 311 0
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHH
Q 005468 611 EQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAI 678 (695)
Q Consensus 611 ~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i 678 (695)
.+.+ .+.+.|++.++ ++|+++++|+.|++++++| +|++||++|+.|++.+.+..
T Consensus 670 ---~~~~----~L~~~i~~~i~-~~l~~~~~p~~i~~v~~lP------~T~sGKi~Rr~Lr~~~~~~~ 723 (728)
T PLN03052 670 ---PDLN----ELKKIFNSAIQ-KKLNPLFKVSAVVIVPSFP------RTASNKVMRRVLRQQLAQEL 723 (728)
T ss_pred ---CCHH----HHHHHHHHHHH-hhcCCccCCCEEEEcCCCC------CCCchHHHHHHHHHHHHhhh
Confidence 0112 33445555554 6789999999999999999 99999999999999887764
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-65 Score=575.05 Aligned_cols=504 Identities=24% Similarity=0.333 Sum_probs=410.7
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.|+.++|.+.++++|+++|+.+. ++. +++||+||.+++.++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~ 90 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFAT 90 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence 58999999999999999999875 332 56999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-----hHHHhccc-------------CCCCceEEEEECCCCC
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLS-------------EVPTVRLIVVIGGIDD 220 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~-------------~~~~l~~ii~~~~~~~ 220 (695)
+++|++++|+++.++.+++.+++++++++++|++.... ..+..... ..+.++.++.++....
T Consensus 91 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (558)
T PRK12583 91 ARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPP 170 (558)
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCC
Confidence 99999999999999999999999999999999976432 11111111 1223344444432211
Q ss_pred CCCCCCcCCCceEeeHHHHHhccccC-----CCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccC
Q 005468 221 QIPSLPITTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY 295 (695)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 295 (695)
.....|+++...+... ........++++++++|||||||.||||.+||+++.+.+......+++.
T Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~ 240 (558)
T PRK12583 171 ----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLT 240 (558)
T ss_pred ----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCC
Confidence 0123444443332110 0111234578899999999999999999999999998888777778888
Q ss_pred CCcEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchH
Q 005468 296 PSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372 (695)
Q Consensus 296 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~ 372 (695)
++|++++.+|++|.++... .+.++..|+++++.. .++..+++.++++++|+++++|+++..+......
T Consensus 241 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--------- 311 (558)
T PRK12583 241 EHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR--------- 311 (558)
T ss_pred CCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc---------
Confidence 9999999999999999877 456788999888654 6889999999999999999999998766542100
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-Ccccccccccccccc
Q 005468 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCL 451 (695)
Q Consensus 373 ~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~ 451 (695)
.+ ...+++|.+++||+++++++.+++.+.++ ..+++.||+||++++
T Consensus 312 ----------------~~-----------------~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 358 (558)
T PRK12583 312 ----------------GN-----------------FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPV 358 (558)
T ss_pred ----------------cC-----------------CCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccc
Confidence 00 00148999999999999999999988886 469999999999987
Q ss_pred ccccCCCC---CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeeccc
Q 005468 452 ISQLDEGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528 (695)
Q Consensus 452 ~~~~~~~~---~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGD 528 (695)
++...... ...+++|.|++++.++|+|++ +..++.|+ .|||+|+|+.++.||+++++.+...|+.+|||+|||
T Consensus 359 ~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD 434 (558)
T PRK12583 359 SLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGE---IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGD 434 (558)
T ss_pred eeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCC---eeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccc
Confidence 66543322 356789999999999999954 67777776 899999999999999999999999887899999999
Q ss_pred EEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCC
Q 005468 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGI 605 (695)
Q Consensus 529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~ 605 (695)
+|++++||++++.||+||+||+ +|++|+|.+||+++.++|+|.+++|+|.++ ++.++++|++.++. ..
T Consensus 435 l~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~ 505 (558)
T PRK12583 435 LATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGH--------AA 505 (558)
T ss_pred eEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCC--------CC
Confidence 9999999999999999999996 899999999999999999999999999653 46788888876531 01
Q ss_pred CcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHH
Q 005468 606 QYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAI 678 (695)
Q Consensus 606 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i 678 (695)
..++|+++++ ++|+.|++|..+++++++| +|++||++|++|++++.+++
T Consensus 506 -----------------~~~~i~~~~~-~~L~~~~~P~~i~~v~~lP------~t~sGK~~r~~L~~~~~~~~ 554 (558)
T PRK12583 506 -----------------SEEELREFCK-ARIAHFKVPRYFRFVDEFP------MTVTGKVQKFRMREISIEEL 554 (558)
T ss_pred -----------------CHHHHHHHHH-hhcccCcCCcEEEEeccCC------CCCCCCccHHHHHHHHHhhc
Confidence 0345666665 7899999999999999999 99999999999999877653
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-65 Score=575.18 Aligned_cols=505 Identities=26% Similarity=0.346 Sum_probs=413.7
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..|+.++|.+.++++||++|+.+. ++. +.+||+||.+++.++|.+|.+.|+++||+|+|+++|+++|++++||
T Consensus 15 ~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la 87 (559)
T PRK08315 15 EQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFA 87 (559)
T ss_pred hccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence 358999999999999999999875 332 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchh-----HHHhcccC-------------CCCceEEEEECCCC
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN-----SLLSCLSE-------------VPTVRLIVVIGGID 219 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~-------------~~~l~~ii~~~~~~ 219 (695)
|+++|++++|+++.++.+++..+++.++++++|++..... .+.+...+ .+..+.++.++...
T Consensus 88 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (559)
T PRK08315 88 TAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK 167 (559)
T ss_pred HHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC
Confidence 9999999999999999999999999999999999865421 12111111 13344455444321
Q ss_pred CCCCCCCcCCCceEeeHHHHHhccccC-----CCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcccccc
Q 005468 220 DQIPSLPITTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF 294 (695)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 294 (695)
......+.++....... ........++++++++|||||||.||+|.+||+++...+......+++
T Consensus 168 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~ 237 (559)
T PRK08315 168 ----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKL 237 (559)
T ss_pred ----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCC
Confidence 11224555554432110 011223457889999999999999999999999999888887777889
Q ss_pred CCCcEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccch
Q 005468 295 YPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371 (695)
Q Consensus 295 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~ 371 (695)
.++|+++..+|++|.+++.. .+.++..|+++++.. .++..+++.++++++|+++++|+++..+.......
T Consensus 238 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~------- 310 (559)
T PRK08315 238 TEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFA------- 310 (559)
T ss_pred CCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccC-------
Confidence 99999999999999999876 566899999998544 68999999999999999999999998765421000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCc-cccccccccccc
Q 005468 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSC 450 (695)
Q Consensus 372 ~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~-v~~~YG~TE~~~ 450 (695)
....+++|.+++||+++++++.+.+.+.++.. +++.||+||++.
T Consensus 311 -----------------------------------~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~ 355 (559)
T PRK08315 311 -----------------------------------RFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSP 355 (559)
T ss_pred -----------------------------------CCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEccccccc
Confidence 00114899999999999999999999888754 999999999987
Q ss_pred cccccCCCC---CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecc
Q 005468 451 LISQLDEGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527 (695)
Q Consensus 451 ~~~~~~~~~---~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TG 527 (695)
+++.....+ ....++|+|+++++++|+|.+++..++.|+ .|||+|+|++++.|||++++.+++.|..++||+||
T Consensus 356 ~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TG 432 (559)
T PRK08315 356 VSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGE---QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG 432 (559)
T ss_pred ceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCC---ceEEEEECchhhhhhcCChhHHhhcCCCCCCEEcc
Confidence 665443322 356789999999999999966577777776 89999999999999999999999999889999999
Q ss_pred cEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcC
Q 005468 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEG 604 (695)
Q Consensus 528 Dlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~ 604 (695)
|+|++|+||.++++||.||+||+ +|++|+|.+||+++.++|+|.+++|++.++ ++.++++|++.++. .
T Consensus 433 D~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~ 503 (559)
T PRK08315 433 DLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGA--------T 503 (559)
T ss_pred ceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCC--------C
Confidence 99999999999999999999996 899999999999999999999999999654 35688888876531 0
Q ss_pred CCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 605 IQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
+. .++++++++ ++|+.|++|..|++++++| +|++||++|.+|++++...
T Consensus 504 ~~-----------------~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GK~~r~~L~~~~~~~ 552 (559)
T PRK08315 504 LT-----------------EEDVRDFCR-GKIAHYKIPRYIRFVDEFP------MTVTGKIQKFKMREMMIEE 552 (559)
T ss_pred CC-----------------HHHHHHHHH-hhcccccCCcEEEEcccCC------CCCCCceeHHHHHHHHHhh
Confidence 11 334555554 6899999999999999999 9999999999999876654
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-65 Score=569.56 Aligned_cols=504 Identities=27% Similarity=0.374 Sum_probs=428.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...++.++|.+.++.+|+++|+.+. +. .+||+||++++.++|+.|.+.|+++|++|+++++|+++++++++
T Consensus 4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~~------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l 74 (521)
T PRK06187 4 YPLTIGRILRHGARKHPDKEAVYFD---GR------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF 74 (521)
T ss_pred ccCCHHHHHHHHHHHCCCceEEEeC---Cc------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999865 33 39999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|++++|+++.++.+++..+++.+++++++++.+..+.+.+.....+.++.++.+++.... ........+
T Consensus 75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 148 (521)
T PRK06187 75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA------PLAPEVGEY 148 (521)
T ss_pred HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc------ccccccccH
Confidence 99999999999999999999999999999999999998888777777677777777777654311 111233556
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (695)
.+++...... .......++++++++|||||||.||+|.+||+++..........+++.++|++++.+|++|.+++...+
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 227 (521)
T PRK06187 149 EELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY 227 (521)
T ss_pred HHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHH
Confidence 6665543321 223345678999999999999999999999999998888777778899999999999999999998877
Q ss_pred HHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 005468 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (695)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (695)
.+++.|+++++.+ .++..+++.++++++|+++++|+++..+.+.....
T Consensus 228 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~------------------------------- 276 (521)
T PRK06187 228 LALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY------------------------------- 276 (521)
T ss_pred HHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------------------------------
Confidence 7999999999877 68999999999999999999999999887632110
Q ss_pred hhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCC------CCCCcCCCc
Q 005468 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN------LSGHVGSPN 469 (695)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~------~~~~vG~p~ 469 (695)
.....++|.+++||+++++++.+.+.+.+++++++.||+||+++++........ ..+++|.|+
T Consensus 277 -----------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 345 (521)
T PRK06187 277 -----------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPL 345 (521)
T ss_pred -----------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCcccccc
Confidence 001148999999999999999999999889999999999999876665544333 667899999
Q ss_pred cCcEEEEeecCCCCCCCC--CCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCe
Q 005468 470 AACEIKLVDVPEMNYTSE--DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (695)
Q Consensus 470 ~~~~v~i~d~~~~~~~~~--~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ 547 (695)
++++++|+| +++..++. |+ .|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|.+++.||.+|+
T Consensus 346 ~~~~~~i~~-~~~~~~~~~~g~---~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~ 420 (521)
T PRK06187 346 PGVEARIVD-DDGDELPPDGGE---VGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDV 420 (521)
T ss_pred CCeEEEEEC-CCCCCCCCCCCC---eeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecccce
Confidence 999999999 55566665 54 89999999999999999999999988 6789999999999999999999999999
Q ss_pred eecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005468 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVL 624 (695)
Q Consensus 548 ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 624 (695)
||+ +|.+|+|.+||+++.++++|.+++|++.++ ++.+++++++.++. .. + .
T Consensus 421 i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~----------~-------~ 474 (521)
T PRK06187 421 IIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGA--------TL----------D-------A 474 (521)
T ss_pred EEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCC--------CC----------C-------H
Confidence 997 899999999999999999999999998653 46888888876531 00 0 2
Q ss_pred HHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 625 ADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 625 ~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
+++.++++ ..|+.|++|..|++++++| +|++||++|++|++.|++
T Consensus 475 ~~l~~~l~-~~l~~~~~p~~i~~v~~~P------~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 475 KELRAFLR-GRLAKFKLPKRIAFVDELP------RTSVGKILKRVLREQYAE 519 (521)
T ss_pred HHHHHHHH-HhccCCCCceEEEEccCCC------CCCCCCeeHHHHHHHHhc
Confidence 33444443 6789999999999999999 999999999999999875
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-65 Score=568.59 Aligned_cols=497 Identities=20% Similarity=0.258 Sum_probs=407.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..++.++|.++++ ||++|+.+. + +.+||+||.+++.++|++|.+.|+++|++|+++++|+++|+++++|
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la 92 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA 92 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence 3589999998887 999999854 2 3499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-----hHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCce
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
|+++|++++++.+....+++..+++.+++++++++.... ..........+.++.++..+.. .
T Consensus 93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~ 159 (536)
T PRK10946 93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-------------G 159 (536)
T ss_pred HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-------------C
Confidence 999999888777777888899999999999999986431 1112222233445555544321 1
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHH
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (695)
...+.+++..... ..+.....++++++++|||||||.||||++||+++...+......+.+.++|++++.+|++|.+++
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~ 238 (536)
T PRK10946 160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPM 238 (536)
T ss_pred CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccc
Confidence 1234444433222 122234567899999999999999999999999999998877777888999999999999999887
Q ss_pred HH--HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Q 005468 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (695)
Q Consensus 313 ~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (695)
.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+.+.....
T Consensus 239 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~----------------------- 295 (536)
T PRK10946 239 SSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS----------------------- 295 (536)
T ss_pred hhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc-----------------------
Confidence 64 566899999998876 6889999999999999999999999988764211000
Q ss_pred CCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccC-CCCCCCCCcCCC
Q 005468 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSP 468 (695)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p 468 (695)
....+++|.+++||+++++++.+.+.+.+|+++++.||+||++....... ......+++|.|
T Consensus 296 -----------------~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p 358 (536)
T PRK10946 296 -----------------RAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRP 358 (536)
T ss_pred -----------------cccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCcc
Confidence 00014899999999999999999999989999999999999764333221 112346789999
Q ss_pred c-cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCe
Q 005468 469 N-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (695)
Q Consensus 469 ~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ 547 (695)
+ |+++++|+| ++++.++.|+ .|||+++|+.++.|||++++.|.+.|+.+|||+|||+|++|++|++++.||.+|+
T Consensus 359 ~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~ 434 (536)
T PRK10946 359 MSPDDEVWVAD-ADGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQ 434 (536)
T ss_pred cCCCceEEEEC-CCCCCCCCCC---ccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccce
Confidence 8 899999999 5667777776 8999999999999999999999999988999999999999999999999999999
Q ss_pred eecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005468 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVL 624 (695)
Q Consensus 548 ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 624 (695)
||+ +|++|+|.+||+.|.++|+|.+++|++.++ ++.++++|++.+. .+ .
T Consensus 435 i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~----------~~-----------------~ 486 (536)
T PRK10946 435 INR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP----------LK-----------------A 486 (536)
T ss_pred eec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC----------CC-----------------H
Confidence 996 999999999999999999999999999654 3578898887652 11 3
Q ss_pred HHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 625 ADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 625 ~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
+++++++++..|+.|++|..+.+++++| +|++||++|++|++++++.
T Consensus 487 ~~l~~~~~~~~l~~~~~P~~~~~~~~iP------~t~~GKv~r~~L~~~~~~~ 533 (536)
T PRK10946 487 VQLRRFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASR 533 (536)
T ss_pred HHHHHHHHhCCccccccCcEEEEeccCC------CCCCCcccHHHHHHHHHhh
Confidence 3556666544699999999999999999 9999999999999987764
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=566.68 Aligned_cols=508 Identities=19% Similarity=0.251 Sum_probs=407.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+...++.++|.+.++++|+++|+... + +.+||+||.+++.++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 7 ~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~ 77 (540)
T PRK06164 7 PRADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLF 77 (540)
T ss_pred cCCCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHH
Confidence 34568999999999999999999742 2 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-----hHHHhccc-CCCCceEEEEECCCCCCCCCCCcCC
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLS-EVPTVRLIVVIGGIDDQIPSLPITT 229 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~ 229 (695)
+||+++|++++|+++..+.+++.+++++++++++|++.+.. +.+..... ..+.++.++.++..........
T Consensus 78 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (540)
T PRK06164 78 LACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPA--- 154 (540)
T ss_pred HHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCC---
Confidence 99999999999999999999999999999999999986642 11222111 1234555666552211111000
Q ss_pred CceEeeHHHHHhccccCCC---CCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCCh
Q 005468 230 GVQILTYSNLLSQGRSNLQ---PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (695)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl 306 (695)
...+.++......... ......++++++++|||||||.||||++||+++...+......+++.+++++++++|+
T Consensus 155 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~ 231 (540)
T PRK06164 155 ---PGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPF 231 (540)
T ss_pred ---cccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCc
Confidence 0011111111000000 0122346889999999999999999999999999988877777888899999999999
Q ss_pred hhHHHHHHHHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 005468 307 AHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (695)
Q Consensus 307 ~h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (695)
+|.+++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+... .
T Consensus 232 ~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~----~------------------ 289 (540)
T PRK06164 232 CGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG----E------------------ 289 (540)
T ss_pred hhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc----c------------------
Confidence 99999988888999999998877 789999999999999999999999998876300 0
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcC-CCCcHHHHHHHHHHhCCccccccccccccccccccCCCC---CC
Q 005468 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA-SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NL 461 (695)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG-~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~ 461 (695)
....++++.+.++| ++.+.++.+++... |+++++.||+||++++++...... ..
T Consensus 290 ---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 347 (540)
T PRK06164 290 ---------------------RADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDPVSVR 347 (540)
T ss_pred ---------------------cCCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCCCcce
Confidence 00014788776665 56667777777665 899999999999987665543322 23
Q ss_pred CCCcCCCc-cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEE
Q 005468 462 SGHVGSPN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 462 ~~~vG~p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i 540 (695)
..++|.|+ ++++++|+|++++..++.|+ .|||||+|++++.|||++++.|.+.|+.+|||+|||+|++|++|.+++
T Consensus 348 ~~~~g~~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~ 424 (540)
T PRK06164 348 IEGGGRPASPEARVRARDPQDGALLPDGE---SGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVY 424 (540)
T ss_pred eccCccccCCCeEEEEecCCCCcCCCCCC---eeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEE
Confidence 34678876 89999999977778777776 899999999999999999999999998899999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
.||.||+||+ +|++|+|++||+++.++|+|.+++|++.+. +..++++|++.++. ...
T Consensus 425 ~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~--------~~~------------ 483 (540)
T PRK06164 425 QTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGA--------SPD------------ 483 (540)
T ss_pred EeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCC--------CCC------------
Confidence 9999999997 899999999999999999999999999643 45788999887531 011
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccc---cCChHHHHHHHHHHH
Q 005468 619 ARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTF---KIKRPQAKQYFAKAI 678 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~g---Ki~R~~l~~~~~~~i 678 (695)
.++|.++++ .+|+.|++|..|++++++| +|++| |++|++|++++++..
T Consensus 484 -----~~~l~~~~~-~~l~~~~~P~~i~~~~~~P------~t~~g~~~Ki~r~~L~~~~~~~~ 534 (540)
T PRK06164 484 -----EAGLMAACR-EALAGFKVPARVQVVEAFP------VTESANGAKIQKHRLREMAQARL 534 (540)
T ss_pred -----HHHHHHHHH-hhcccCcCCcEEEEecCCC------CCCCCccccccHHHHHHHHHHhh
Confidence 345556665 6899999999999999999 99999 999999999877543
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=562.34 Aligned_cols=488 Identities=23% Similarity=0.310 Sum_probs=400.4
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
+.++.++|.+.++++|+++|+.+. + +++||.||.+++.++|.+|.+.|+++|++|+|+++|+++|+++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA 71 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 468899999999999999999764 2 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++.+++.++++.++++.++++.+....... ....+.++.... ..+.
T Consensus 72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~-------------~~~~ 131 (497)
T PRK06145 72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-------ETPKIVIDAAAQ-------------ADSR 131 (497)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-------ccceEEecCccc-------------chhH
Confidence 99999999999999999999999999999999998765433210 111222222110 0111
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-HH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QV 316 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~ 316 (695)
.+.. ............++++++++|||||||.||+|++||+++...+......+++..+++++..+|++|.+++.. .+
T Consensus 132 ~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 210 (497)
T PRK06145 132 RLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGI 210 (497)
T ss_pred HHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHH
Confidence 1111 111111223356789999999999999999999999999876665555677889999999999999998876 45
Q ss_pred HHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 005468 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (695)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (695)
.+++.|+++++.+ .++..+++.++++++|++.++|+++..++......
T Consensus 211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~------------------------------- 259 (497)
T PRK06145 211 AVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD------------------------------- 259 (497)
T ss_pred HHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc-------------------------------
Confidence 6789999998877 79999999999999999999999998886521000
Q ss_pred hhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC--CCCCCCcCCCccCc
Q 005468 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAAC 472 (695)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ 472 (695)
....+++|.+++||+++++++.+.+.+.| +.++++.||+||+++.++..... ....+++|.|++++
T Consensus 260 -----------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~ 328 (497)
T PRK06145 260 -----------RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHV 328 (497)
T ss_pred -----------ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCc
Confidence 00014799999999999999999999888 57899999999998765543322 23567899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCC
Q 005468 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (695)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~ 552 (695)
+++++| +++..++.|. .|||+++|++++.|||++++.+.+.| .++||+|||+|++|+||+++++||+||+||+ +
T Consensus 329 ~~~i~~-~~~~~~~~~~---~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~ 402 (497)
T PRK06145 329 EIRIAD-GAGRWLPPNM---KGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIIS-G 402 (497)
T ss_pred eEEEEC-CCCCCCCCCC---ceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEe-C
Confidence 999999 5566666665 89999999999999999999999998 6899999999999999999999999999996 8
Q ss_pred eeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
|++|+|.+||+++.++|+|.+++|++.++ ++.+++++++.+.. ... .++|.+
T Consensus 403 G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~l~~ 457 (497)
T PRK06145 403 GENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGA--------TLT-----------------LEALDR 457 (497)
T ss_pred CeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCC--------CCC-----------------HHHHHH
Confidence 99999999999999999999999999654 46788999886521 011 345556
Q ss_pred HHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
+++ ++|+.|++|..|.+++++| +|++||++|++|++++.
T Consensus 458 ~~~-~~l~~~~~p~~i~~v~~iP------~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 458 HCR-QRLASFKVPRQLKVRDELP------RNPSGKVLKRVLRDELN 496 (497)
T ss_pred HHH-HhhhcCCCCCEEEEeccCC------CCCcccccHHHHHHHhc
Confidence 665 6799999999999999999 99999999999998653
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=564.64 Aligned_cols=508 Identities=21% Similarity=0.264 Sum_probs=407.4
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..|+.++|+++++++||++++... .+ +..+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la 83 (542)
T PRK06018 9 PLLCHRIIDHAARIHGNREVVTRS--VE---GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYG 83 (542)
T ss_pred CCCHHHHHHHHHHhCCCceEEEee--cc---CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Confidence 359999999999999999999753 12 2356799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++.+++.++++.+++++++++....+.+.+.....+.++.++...+... ... ........|.
T Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~ 159 (542)
T PRK06018 84 IMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAH-MPQ---TTLKNAVAYE 159 (542)
T ss_pred HHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccc-ccc---cCccccccHH
Confidence 999999999999999999999999999999999998887777665555556666665543211 000 0111234566
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHH-HH-HHhhccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI-AS-VAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~-~~-~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
++...... ........++++++|+|||||||.||||++||++++ .. .......+++..+|+++..+|++|.+++...
T Consensus 160 ~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~ 238 (542)
T PRK06018 160 EWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIA 238 (542)
T ss_pred HHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHH
Confidence 66543321 112233466889999999999999999999999743 22 2223345678899999999999999998877
Q ss_pred HHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 316 VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 316 ~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+.++..|+++++.. .++..+++.++++++|++.++|+++..+.+......
T Consensus 239 ~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------- 290 (542)
T PRK06018 239 FSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG---------------------------- 290 (542)
T ss_pred HhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC----------------------------
Confidence 78899999998864 578899999999999999999999998865321100
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----------CCC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLS 462 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----------~~~ 462 (695)
...+++|.+++||+++++++.++|++ +++++++.||+||++.+++...... ...
T Consensus 291 --------------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (542)
T PRK06018 291 --------------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVL 355 (542)
T ss_pred --------------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchhhhhcc
Confidence 00148999999999999999999999 8999999999999987654332111 123
Q ss_pred CCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEe
Q 005468 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 463 ~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (695)
.++|+|.++++++|+| +++..++.+.. ..|||+++|++++.|||++ +...++.+|||+|||+|+++++|++++.|
T Consensus 356 ~~~G~~~~g~~i~v~d-~~~~~~~~~~~-~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~G 430 (542)
T PRK06018 356 QKQGYPPFGVEMKITD-DAGKELPWDGK-TFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITD 430 (542)
T ss_pred ccCCCCCCCcEEEEEC-CCCCCCCCCCC-ceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEe
Confidence 5789999999999999 45555543210 2799999999999999984 34456678999999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRA 619 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (695)
|.+|+|++ +|++|+|.+||+++.+||+|.+|+|+|.++ ++.+.++|++.++. ...
T Consensus 431 R~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~~------------- 488 (542)
T PRK06018 431 RSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGE--------TAT------------- 488 (542)
T ss_pred cCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCC--------CCC-------------
Confidence 99999996 999999999999999999999999999654 45788888877531 011
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 620 RAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 620 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.+++.++++ .+++.|++|..|.+++++| +|++||++|++|++.|.+
T Consensus 489 ----~~~l~~~~~-~~l~~~~~P~~i~~v~~iP------~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 489 ----REEILKYMD-GKIAKWWMPDDVAFVDAIP------HTATGKILKTALREQFKD 534 (542)
T ss_pred ----HHHHHHHHH-hhCccccCCcEEEEeccCC------CCCcchhhHHHHHHHHhc
Confidence 345566665 6799999999999999999 999999999999988765
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-65 Score=619.74 Aligned_cols=505 Identities=23% Similarity=0.283 Sum_probs=408.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+...++.+.|.+.++++||++|+.+. ++ +.+||+||.++++++|++|.+ ++++||+|+++++|+++|++++
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~ 682 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALAN 682 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHH
Confidence 45689999999999999999999743 22 359999999999999999987 4899999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhccc--CCCCceEEEEECCCCCCCCCCCcCCCceE
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~--~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (695)
+||+++|++++|+++..+.+++.+++++++++++++++...+.+.+... ..+....++..++...... ..
T Consensus 683 la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 754 (1146)
T PRK08633 683 LALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS--------KV 754 (1146)
T ss_pred HHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------hh
Confidence 9999999999999999999999999999999999999876665542110 1222334444443211000 00
Q ss_pred eeHHHHHhccccC-----CCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhh
Q 005468 234 LTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308 (695)
Q Consensus 234 ~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h 308 (695)
..+.+........ ........++|+++++|||||||.||||++||+++...+......+++.++|++++.+|++|
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 834 (1146)
T PRK08633 755 DKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834 (1146)
T ss_pred HHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHH
Confidence 1122211110000 00013456799999999999999999999999999998887777788899999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 005468 309 IYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (695)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (695)
.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|++++.+.+....
T Consensus 835 ~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------- 892 (1146)
T PRK08633 835 SFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL---------------------- 892 (1146)
T ss_pred HHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc----------------------
Confidence 999987 567899999998866 5889999999999999999999999887652100
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-------
Q 005468 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG------- 458 (695)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~------- 458 (695)
.+...+++|.+++||+++++++.+.+++.+|+++++.||+||++++++...+.
T Consensus 893 --------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 952 (1146)
T PRK08633 893 --------------------HPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952 (1146)
T ss_pred --------------------CcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccc
Confidence 00011589999999999999999999999999999999999998766544322
Q ss_pred ---CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCC---CCeeecccEEEE
Q 005468 459 ---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE---DGWFHTGDIGMW 532 (695)
Q Consensus 459 ---~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~---~gw~~TGDlg~~ 532 (695)
....+++|+|+|+++++|+|+++++.++.|+ .|||+++|++++.||+++|+.|++.|.+ +|||+|||+|++
T Consensus 953 ~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~ 1029 (1146)
T PRK08633 953 RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGE---DGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029 (1146)
T ss_pred cccCCCCCCccccCCCCEEEEEcCCCCccCCCCC---ceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEE
Confidence 1346789999999999999977788888776 8999999999999999999999998832 389999999999
Q ss_pred ecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCc--CcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCc
Q 005468 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCK--FVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQY 607 (695)
Q Consensus 533 ~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p--~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~ 607 (695)
|+||+++++||.||+||+ +|++|+|.|||+++.+|| .+.+++|++.++ ++.+++++++... +
T Consensus 1030 ~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~-----------~- 1096 (1146)
T PRK08633 1030 DEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAE-----------D- 1096 (1146)
T ss_pred cCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCcc-----------C-
Confidence 999999999999999996 899999999999999999 466799998654 4578888876321 0
Q ss_pred ccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 608 ENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 608 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.+++++.+++.+++.|++|..+++++++| +|++||++|++|++..++.
T Consensus 1097 ----------------~~~l~~~~~~~~l~~~~~P~~i~~~~~iP------~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1097 ----------------VEELKRAIKESGLPNLWKPSRYFKVEALP------LLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred ----------------HHHHHHHHHhcCCCcccCCcEEEEecCcC------CCCCCCCcHHHHHHHHHHh
Confidence 23444444446799999999999999999 9999999999999876543
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=571.71 Aligned_cols=480 Identities=21% Similarity=0.260 Sum_probs=363.6
Q ss_pred HHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHh
Q 005468 81 THDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSA 160 (695)
Q Consensus 81 l~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~ 160 (695)
+.+.|+++++++|+++|+.+. + .+.++++||+||.++++++|++|.+. ++||+|+|+++|+++|++++|||++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~ 76 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWL 76 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 889999999999999999754 2 23468899999999999999999988 7999999999999999999999999
Q ss_pred cCCeEEeccCC-------CCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceE
Q 005468 161 YSFISVPLYDT-------LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (695)
Q Consensus 161 ~G~v~vpl~~~-------~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (695)
+|+++++++.. ...+++.+++++++++++|++......+...... +.+.+.
T Consensus 77 ~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~~--------------- 134 (525)
T PRK05851 77 AGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHDL--------------- 134 (525)
T ss_pred cCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------cccccc---------------
Confidence 99986543211 2234566789999999999987665544332110 001100
Q ss_pred eeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccC-CCcEEEEeCChhhHHHH
Q 005468 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-PSDVYISYLPLAHIYER 312 (695)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~d~~l~~~pl~h~~~~ 312 (695)
........ ..+.....++++++|+|||||||.||||++||+++++.+......+++. ++|++++++|++|++++
T Consensus 135 ---~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 209 (525)
T PRK05851 135 ---ATAAHTNR--SASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGL 209 (525)
T ss_pred ---cccccccc--cccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccH
Confidence 00000000 0111234678999999999999999999999999999888877778888 89999999999999999
Q ss_pred HHHHHHHHcCcEEeEec---C--ChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005468 313 ANQVMTVYSGVAVGFYQ---G--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (695)
Q Consensus 313 ~~~~~~l~~G~~~~~~~---~--~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~ 387 (695)
...+.+++.|+++++.+ + ++..+++.+.++++|++..+|.++..+.+. ....
T Consensus 210 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~-~~~~---------------------- 266 (525)
T PRK05851 210 AFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKY-ARRV---------------------- 266 (525)
T ss_pred HHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHh-hccc----------------------
Confidence 88888999999999875 2 677899999999999885554444433221 0000
Q ss_pred hcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH---hCC---ccccccccccccccccccCCC---
Q 005468 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC---FGG---RVTEGYGMTETSCLISQLDEG--- 458 (695)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~---~g~---~v~~~YG~TE~~~~~~~~~~~--- 458 (695)
.....+++|.+++||+++++++.++|.+. +|+ .+++.||+||++..++...+.
T Consensus 267 ------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 328 (525)
T PRK05851 267 ------------------SDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGL 328 (525)
T ss_pred ------------------cCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCc
Confidence 00001479999999999999999988764 454 499999999998665543221
Q ss_pred ------------CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeec
Q 005468 459 ------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526 (695)
Q Consensus 459 ------------~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~T 526 (695)
....+++|+|++|++++|+|.++...++.|+ .|||+|+|++++.|||++++.+ .+|||+|
T Consensus 329 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~---~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~T 400 (525)
T PRK05851 329 RVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGRE---IGEIEIRGASMMSGYLGQAPID-----PDDWFPT 400 (525)
T ss_pred eeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCC---eEEEEEecCchhhccccCCccC-----CCCceec
Confidence 1234689999999999999955444566665 8999999999999999998643 5789999
Q ss_pred ccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHc
Q 005468 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASE 603 (695)
Q Consensus 527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~ 603 (695)
||+|+++ +|+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++ ++.+.++|+.....
T Consensus 401 GDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~-------- 470 (525)
T PRK05851 401 GDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRG-------- 470 (525)
T ss_pred cceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecC--------
Confidence 9999997 8999999999999997 899999999999999999999999988543 34455655543110
Q ss_pred CCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEee--cCCCCCCCccCccccCChHHHHHHHHH
Q 005468 604 GIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVL--EPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~--~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
. ..+++++.+.+.|.. .+ +++|+.+++++ ++| +|++||++|++|++.+++
T Consensus 471 -~---------~~~~~~~~~~~~l~~-----~l--~~~P~~~~~v~~~~lP------~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 471 -P---------DEAGARSEVVQRVAS-----EC--GVVPSDVVFVAPGSLP------RTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred -c---------chHHHHHHHHHHHHH-----Hh--CCCccEEEEECCCCcC------cCcchHHHHHHHHHHHHh
Confidence 0 011222233322221 12 27899999998 899 999999999999987754
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=567.09 Aligned_cols=516 Identities=24% Similarity=0.283 Sum_probs=401.0
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.|++++|.+.++.+|+++|+.+. . ..+||+||.+++.++|.+|.+.|+++||+|+++++|+++|+++++||
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 90 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV 90 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 57899999999999999999753 2 35899999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCC-------CCceEEEEECCCCCCCCCCCcCCCc
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEV-------PTVRLIVVIGGIDDQIPSLPITTGV 231 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-------~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (695)
+++|++++|+++.++.+++.++++.++++++|+++...+.+.+....+ .....++.++...............
T Consensus 91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
T PLN02479 91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK 170 (567)
T ss_pred HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence 999999999999999999999999999999999987655443322111 1122344443321111000000111
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHH
Q 005468 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (695)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 311 (695)
....|.+++...............+++++++|||||||.||||++||+++..........+++..++++++.+|++|.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~ 250 (567)
T PLN02479 171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNG 250 (567)
T ss_pred CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhh
Confidence 23456776654322111112233457788999999999999999999998766655545567888999999999999999
Q ss_pred HHHHHH-HHHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcC
Q 005468 312 RANQVM-TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (695)
Q Consensus 312 ~~~~~~-~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (695)
+...+. .++.|.++++..+++..+++.++++++|++.++|+++..+.+......
T Consensus 251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------- 305 (567)
T PLN02479 251 WCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET------------------------- 305 (567)
T ss_pred HHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc-------------------------
Confidence 876544 566777777666899999999999999999999999998865311000
Q ss_pred CCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccC--C-------CC--
Q 005468 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD--E-------GD-- 459 (695)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~--~-------~~-- 459 (695)
. ...++++.++++|+++++++.++|.+. ++++++.||+||+++.++... + ..
T Consensus 306 -----~-----------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~ 368 (567)
T PLN02479 306 -----I-----------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQA 368 (567)
T ss_pred -----c-----------ccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCccccc
Confidence 0 001478999999999999999999875 889999999999865433221 0 00
Q ss_pred CCCCCcCCCccCcE-EEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcE
Q 005468 460 NLSGHVGSPNAACE-IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538 (695)
Q Consensus 460 ~~~~~vG~p~~~~~-v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l 538 (695)
....++|.+.++++ ++|+|.+++..++.+.. +.|||+++|++++.|||++++.|.+.| .+|||+|||+|++|++|++
T Consensus 369 ~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~-~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l 446 (567)
T PLN02479 369 RLNARQGVRYIGLEGLDVVDTKTMKPVPADGK-TMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYI 446 (567)
T ss_pred ccccccCCCcCCcCceeEEcCCCCcccCCCCC-CceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccE
Confidence 11245788888886 88998666666654321 379999999999999999999999999 6899999999999999999
Q ss_pred EEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhC
Q 005468 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCN 615 (695)
Q Consensus 539 ~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (695)
+++||.||+||+ +|++|+|.+||+++.+||.|.+++|++.++ ++.+++++++.++... .
T Consensus 447 ~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----------------~ 508 (567)
T PLN02479 447 EIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDK-----------------S 508 (567)
T ss_pred EEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccc-----------------c
Confidence 999999999996 899999999999999999999999999754 3578999988764200 0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 616 DPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 616 ~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
+ .+...++|.++++ .+|+.|++|+.+++ .++| +|++||++|++|++.+..
T Consensus 509 ~---~~~~~~~l~~~~~-~~l~~~~~P~~~~~-~~iP------~t~~gKv~r~~L~~~~~~ 558 (567)
T PLN02479 509 D---EAALAEDIMKFCR-ERLPAYWVPKSVVF-GPLP------KTATGKIQKHVLRAKAKE 558 (567)
T ss_pred c---hhhhHHHHHHHHH-hhcccccCCceEEe-ccCC------CCCccCeeHHHHHHHHHh
Confidence 0 1233456777776 78999999999887 6788 999999999999887654
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-64 Score=560.48 Aligned_cols=497 Identities=24% Similarity=0.319 Sum_probs=409.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
+..|+.++|.++++++|+++|+.+. + +.+||.||.+++.++|+.|.+.|+++|++|+++++|+++|+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~l 80 (524)
T PRK06188 10 SGATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG 80 (524)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3458999999999999999999764 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEeccc-chhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ-TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~-~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
||+++|++++|+++.++.+++.++++.++++.+++++. ....+.......+.+..++.++.... ...
T Consensus 81 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 148 (524)
T PRK06188 81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPD------------GVD 148 (524)
T ss_pred HHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccc------------hhh
Confidence 99999999999999999999999999999999999876 33444333334444555655543210 001
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
+.+....... ........++++++|+|||||||.||+|++||.++...+......+.+..+|++++.+|++|.+++. .
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~ 226 (524)
T PRK06188 149 LLAAAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-F 226 (524)
T ss_pred HHHhhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-H
Confidence 1111111000 0111223456799999999999999999999999999888877778889999999999999998874 4
Q ss_pred HHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCC
Q 005468 316 VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (695)
Q Consensus 316 ~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~ 394 (695)
+.+++.|+++++.+ .++..+++.++++++|+++++|+++..+++.....
T Consensus 227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~------------------------------ 276 (524)
T PRK06188 227 LPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR------------------------------ 276 (524)
T ss_pred HHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc------------------------------
Confidence 66789999999887 68999999999999999999999998886521000
Q ss_pred chhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC------CCCCCcCCC
Q 005468 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD------NLSGHVGSP 468 (695)
Q Consensus 395 ~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~------~~~~~vG~p 468 (695)
....+++|.+++||++++++....+.+.+++.+++.||+||++..++...... ...+++|+|
T Consensus 277 ------------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p 344 (524)
T PRK06188 277 ------------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRP 344 (524)
T ss_pred ------------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCccccc
Confidence 00115899999999999999988888888999999999999976555443221 346789999
Q ss_pred ccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCee
Q 005468 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIF 548 (695)
Q Consensus 469 ~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~i 548 (695)
+++++++|+| +++..++.|. .|||+++|+.++.||+++++.+...| .+|||+|||+|++++||.+++.||.+|+|
T Consensus 345 ~~g~~v~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i 419 (524)
T PRK06188 345 TPGLRVALLD-EDGREVAQGE---VGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMI 419 (524)
T ss_pred cCCcEEEEEc-CCCCCCCCCC---eeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEeccccce
Confidence 9999999999 4566666676 89999999999999999999999988 78999999999999999999999999999
Q ss_pred ecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHH
Q 005468 549 KLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLA 625 (695)
Q Consensus 549 kl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 625 (695)
++ +|++|+|++||++|.++++|.+++|++.++ ++.++++++++++. ... .+
T Consensus 420 ~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~~-----------------~~ 473 (524)
T PRK06188 420 VT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGA--------AVD-----------------AA 473 (524)
T ss_pred ec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCC--------CCC-----------------HH
Confidence 96 899999999999999999999999999654 45788999887531 000 34
Q ss_pred HHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 626 DMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 626 ~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
+|+++++ ..++.|++|..|++++++| +|++||++|++|++.|.+
T Consensus 474 ~l~~~~~-~~l~~~~~p~~i~~v~~~P------~t~~gKi~r~~L~~~~~~ 517 (524)
T PRK06188 474 ELQAHVK-ERKGSVHAPKQVDFVDSLP------LTALGKPDKKALRARYWE 517 (524)
T ss_pred HHHHHHH-HhcccCCCCcEEEEecCCC------CCccccccHHHHHHHHHh
Confidence 5556665 6789999999999999999 999999999999999854
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-64 Score=558.54 Aligned_cols=488 Identities=20% Similarity=0.259 Sum_probs=390.7
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChhHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
...++.++|.+.+. +|++++.+. + +++||.||.+++.++|++|+++ |++++++|+|+++|+++|++++
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~ 71 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL 71 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence 45689999988775 788988753 2 4699999999999999999997 8999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
+||+++|++++|+++.++.+++.+++++++++++|+++.....+.... +.+. ++.++. ..
T Consensus 72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~-~~~~~~----------------~~ 131 (529)
T PRK07867 72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVR-VINVDS----------------PA 131 (529)
T ss_pred HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCce-EEEecc----------------cc
Confidence 999999999999999999999999999999999999987766544332 2222 222221 12
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
|.+++..............++++++|+|||||||.||||++||+++..........+++..+|++++.+|++|.+++...
T Consensus 132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~ 211 (529)
T PRK07867 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAG 211 (529)
T ss_pred HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHH
Confidence 34433322111122234567899999999999999999999999998888877777888899999999999999998774
Q ss_pred -HHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 316 -VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 316 -~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+.++..|+++++.+ .++..+++.++++++|++.++|+.+..++..... .
T Consensus 212 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~-----------------------------~ 262 (529)
T PRK07867 212 WAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPER-----------------------------P 262 (529)
T ss_pred HHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc-----------------------------c
Confidence 45789999998876 6899999999999999999999998876542000 0
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcE
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 473 (695)
.....++|. ++||+++++.. ..+.+.+|+++++.||+||++..++... ....+++|.|+++
T Consensus 263 -------------~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~--~~~~~~~g~~~~~-- 323 (529)
T PRK07867 263 -------------DDADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG-- 323 (529)
T ss_pred -------------cccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCC--CCCCCCcCCCCCC--
Confidence 000136774 56888888765 5666677999999999999986554322 2345789999999
Q ss_pred EEEeecCCCCCCCCCCC---------CCcceEEE-eCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEec
Q 005468 474 IKLVDVPEMNYTSEDQP---------CPRGEICV-RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (695)
Q Consensus 474 v~i~d~~~~~~~~~~~~---------~~~GEl~v-~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (695)
++++|.+++..++.+.. ...|||++ +|++++.||+++++.+.+.| .+|||+|||+|+++++|+++|+||
T Consensus 324 ~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR 402 (529)
T PRK07867 324 VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGR 402 (529)
T ss_pred EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEecc
Confidence 77787555554444420 01699999 99999999999999999988 689999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005468 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRAR 620 (695)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (695)
.||+||+ +|++|+|.+||++|.+||+|.+|+|+|.++ ++.++++|++.++. .++
T Consensus 403 ~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~--------~~~-------------- 459 (529)
T PRK07867 403 LGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGA--------KFD-------------- 459 (529)
T ss_pred ccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCC--------CCC--------------
Confidence 9999997 899999999999999999999999999764 45788888877531 011
Q ss_pred HHHHHHHHHHHHh-cCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 621 AAVLADMDSLGRE-AQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 621 ~~i~~~l~~~~~~-~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.+++++++++ ..|+.|++|..|.+++++| +|++||++|++|+++...
T Consensus 460 ---~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP------~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 460 ---PDAFAEFLAAQPDLGPKQWPSYVRVCAELP------RTATFKVLKRQLSAEGVD 507 (529)
T ss_pred ---HHHHHHHHHhhccCCcccCCeEEEEeeccC------CCCCcceeHHHHHHhcCC
Confidence 2344444442 3699999999999999999 999999999999987654
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=673.87 Aligned_cols=482 Identities=19% Similarity=0.230 Sum_probs=408.7
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...++.++|+.+++++||++|+.+. + +.+||+||+++++++|+.|.+.|+++|++|+|+++|++++++++|
T Consensus 3093 ~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~l 3163 (3956)
T PRK12467 3093 SERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALL 3163 (3956)
T ss_pred ccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHH
Confidence 3479999999999999999999875 3 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|+++||+++.++.+++.+++++++++++|++......+... ... .++.++...
T Consensus 3164 avl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~----~~~-~~~~~~~~~----------------- 3221 (3956)
T PRK12467 3164 AVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP----AGD-TALTLDRLD----------------- 3221 (3956)
T ss_pred HHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc----cCC-ceeeecchh-----------------
Confidence 9999999999999999999999999999999999987654433211 111 122222210
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (695)
........+.....++++++|+|||||||.||||+++|+++.+.+.+....++++++|++++++|++|+.+....+
T Consensus 3222 ----~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 3297 (3956)
T PRK12467 3222 ----LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFL 3297 (3956)
T ss_pred ----hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHH
Confidence 0011111223345789999999999999999999999999999999888888999999999999999999988899
Q ss_pred HHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 317 MTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 317 ~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
.+|+.|+++++.+ .++..+++.|+++++|++.++|+++..+.+...
T Consensus 3298 ~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------------------------------- 3346 (3956)
T PRK12467 3298 WTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG------------------------------- 3346 (3956)
T ss_pred HHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc-------------------------------
Confidence 9999999999876 578999999999999999999999988765210
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC-----CCCCCcCC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (695)
....++||.+++||+++++++.+.|.+.+ ++.++|+||+||++..++...... ....++|+
T Consensus 3347 -------------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~ 3413 (3956)
T PRK12467 3347 -------------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGR 3413 (3956)
T ss_pred -------------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCcc
Confidence 00115799999999999999999998877 578999999999987665433221 23468999
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCC-------eeecccEEEEecCCcEEE
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG-------WFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~g-------w~~TGDlg~~~~dG~l~i 540 (695)
|++|++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|+++|..++ ||+|||+|++++||+|+|
T Consensus 3414 p~~~~~~~v~d-~~~~~vp~G~---~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~ 3489 (3956)
T PRK12467 3414 PVAGRSIYVLD-GQLNPVPVGV---AGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEY 3489 (3956)
T ss_pred ccCCCEEEEEC-CCCCCCCCCC---CceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEE
Confidence 99999999998 6677888887 899999999999999999999999996554 699999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC--CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
+||+||+||+ +|++|+|.|||++|.++|+|.+|+|++.. .++.++|+|++....
T Consensus 3490 ~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~----------------------- 3545 (3956)
T PRK12467 3490 LGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQ----------------------- 3545 (3956)
T ss_pred eccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCC-----------------------
Confidence 9999999998 89999999999999999999999999854 357899999987531
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHH
Q 005468 619 ARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYF 674 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~ 674 (695)
+...++|+++++ .+||.|++|..|++++++| +|++|||+|++|.+.+
T Consensus 3546 --~~~~~~l~~~l~-~~Lp~y~vP~~~~~l~~lP------~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467 3546 --GDWRETLRDHLA-ASLPDYMVPAQLLVLAAMP------LGPNGKVDRKALPDPD 3592 (3956)
T ss_pred --cccHHHHHHHHh-ccCChhhCCCeeeeeccCC------CCCCCccchhhcCCCC
Confidence 012455666665 7899999999999999999 9999999999998643
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-64 Score=564.06 Aligned_cols=507 Identities=23% Similarity=0.312 Sum_probs=402.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..+++.++|...++++|+++|+.+. + +.+||.||.+++.++|++|.+.|+++||+|+|+++|+++++++++
T Consensus 21 ~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~l 91 (557)
T PRK07059 21 QYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIA 91 (557)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 3468999999999999999999864 3 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCC-CCCC-----------
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD-QIPS----------- 224 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~-~~~~----------- 224 (695)
||+++|++++|+++.++.+++.+++++++++++|++......+....... ..+.++....... ....
T Consensus 92 a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (557)
T PRK07059 92 AVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-AVKHVVVASMGDLLGFKGHIVNFVVRRVK 170 (557)
T ss_pred HHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-CCceeEEeccccccccccccccccccccc
Confidence 99999999999999999999999999999999999877655544433222 2333333221100 0000
Q ss_pred --CCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcccc----cc---C
Q 005468 225 --LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT----KF---Y 295 (695)
Q Consensus 225 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~----~~---~ 295 (695)
...........+.++...+...........++++++|+|||||||.||||+++|++++.++......+ .. .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 250 (557)
T PRK07059 171 KMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRP 250 (557)
T ss_pred ccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCC
Confidence 00000112244555554443322233445688999999999999999999999999987654332211 11 1
Q ss_pred CCcEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchH
Q 005468 296 PSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372 (695)
Q Consensus 296 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~ 372 (695)
....+++.+|++|.+++.. .+.++..|++.++.+ .++..+++.++++++|.+.++|+++..+......
T Consensus 251 ~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~--------- 321 (557)
T PRK07059 251 DQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDF--------- 321 (557)
T ss_pred CCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCc---------
Confidence 2457888999999998765 556788888877765 4788999999999999999999999887652100
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccc
Q 005468 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI 452 (695)
Q Consensus 373 ~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~ 452 (695)
. ....+++|.++.||+++++.+.+.|.+.+|+++++.||+||++.++
T Consensus 322 -------------------------~--------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 368 (557)
T PRK07059 322 -------------------------D--------KLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVA 368 (557)
T ss_pred -------------------------C--------cCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchh
Confidence 0 0001478999999999999999999998999999999999998776
Q ss_pred cccCCCC-CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEE
Q 005468 453 SQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531 (695)
Q Consensus 453 ~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~ 531 (695)
+...... ...+++|.|+++++++|+| +++..++.|. .|||+++|+.++.|||++++.+.+.|..+|||+|||+|+
T Consensus 369 ~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~ 444 (557)
T PRK07059 369 TCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGE---PGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGV 444 (557)
T ss_pred hcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEE
Confidence 5543322 3467899999999999998 5667777776 899999999999999999999999998899999999999
Q ss_pred EecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcc
Q 005468 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYE 608 (695)
Q Consensus 532 ~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~ 608 (695)
+++||.++++||++|+||+ +|++|+|.+||+++.++|+|.+++|++.++ ++.++++|+..+.. +.
T Consensus 445 ~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~---------~~-- 512 (557)
T PRK07059 445 MDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPA---------LT-- 512 (557)
T ss_pred EcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCC---------CC--
Confidence 9999999999999999997 899999999999999999999999998643 45678888765421 11
Q ss_pred cHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHH
Q 005468 609 NLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQY 673 (695)
Q Consensus 609 ~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~ 673 (695)
.+++.++++ +.|+.|++|..|.+++++| +|++||++|+.|+++
T Consensus 513 ---------------~~~l~~~~~-~~l~~~~~P~~i~~v~~~P------~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 513 ---------------EEDVKAFCK-ERLTNYKRPKFVEFRTELP------KTNVGKILRRELRDG 555 (557)
T ss_pred ---------------HHHHHHHHH-HhcccccCCcEEEEeccCC------CCcccceeHHHHHhh
Confidence 234555665 6799999999999999999 999999999999754
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-64 Score=558.96 Aligned_cols=497 Identities=21% Similarity=0.283 Sum_probs=411.6
Q ss_pred CCCHHHHHHHH-HHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 78 IGTTHDNFVRA-VDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 78 ~~tl~~~l~~~-a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
.++..+++.++ ++.+||++|+... + +.+||.||.++++++|++|.+.|+++|++|+++++|+++|+++++
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 45677788876 6779999998753 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|++++|+++.++.+++.++++.++++++|++......+.+....++.++.++..+.... ....+
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 142 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA-----------GEVQL 142 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc-----------ccccH
Confidence 9999999999999999999999999999999999998877776666556666777776654210 11234
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHh-hccccccCCCcEEEEeCChhhHHHHHH-
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYLPLAHIYERAN- 314 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~~~~~- 314 (695)
.++...... ........++++++++|||||||.||||+++|+++...+.. ....+++.++|++++.+|++|.+++..
T Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 221 (508)
T TIGR02262 143 AELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNA 221 (508)
T ss_pred HHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHH
Confidence 444332221 11223345789999999999999999999999999887765 334467889999999999999999876
Q ss_pred HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 315 ~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
.+.++..|+++++.+ .++..+++.|++++||++.++|.++..+.....
T Consensus 222 ~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~------------------------------ 271 (508)
T TIGR02262 222 LTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN------------------------------ 271 (508)
T ss_pred HHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc------------------------------
Confidence 456789999998876 579999999999999999999998877654100
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCc
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ 472 (695)
.+...+.++|.+++||+++++++.+.|.+.+|+++++.||+||++.+.+.....+...+++|.|++++
T Consensus 272 ------------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~ 339 (508)
T TIGR02262 272 ------------LPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGY 339 (508)
T ss_pred ------------ccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCCCCCCc
Confidence 00011258999999999999999999999999999999999999876655444445567899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCC
Q 005468 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (695)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~ 552 (695)
+++|+| +++..++.|+ .|||+++|++++.||+++++.+.+.| .+|||+|||+++++++|.++++||.||+||+ +
T Consensus 340 ~v~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~-~ 413 (508)
T TIGR02262 340 RLRLVG-DGGQDVAAGE---PGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKV-S 413 (508)
T ss_pred EEEEEC-CCCCCCCCCC---eeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeee-C
Confidence 999999 7777777776 89999999999999999999999988 6899999999999999999999999999997 7
Q ss_pred eeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
|++|+|.+||+.+.++++|.++++++.++ ...+.+++++.++.. . .+...++|.+
T Consensus 414 G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~--------------~~~~~~~i~~ 471 (508)
T TIGR02262 414 GIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQD--------I--------------DTALETELKE 471 (508)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCc--------c--------------ccccHHHHHH
Confidence 99999999999999999999999999543 356778888765320 0 0122455666
Q ss_pred HHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
.++ .+|+.|++|..+++++++| +|++||++|++|++
T Consensus 472 ~~~-~~l~~~~~p~~i~~~~~iP------~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 472 HVK-DRLAPYKYPRWIVFVDDLP------KTATGKIQRFKLRE 507 (508)
T ss_pred HHH-HhcccCCCCceEEEecCCC------CCCCCcEehhhccC
Confidence 665 6799999999999999999 99999999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-64 Score=555.75 Aligned_cols=473 Identities=21% Similarity=0.263 Sum_probs=384.6
Q ss_pred HHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeE
Q 005468 86 VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFIS 165 (695)
Q Consensus 86 ~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~ 165 (695)
+.+++.+||++|+.+. .++ +.+||+||.+.+.++|++|.+.|+++||+|+|+++|+++|+++++||+++|+++
T Consensus 2 ~~~a~~~p~~~a~~~~--~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 74 (488)
T PRK09088 2 AFHARLQPQRLAAVDL--ALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY 74 (488)
T ss_pred chhhhhCCCceEEEec--CCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 3467889999998753 122 469999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcccc
Q 005468 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRS 245 (695)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (695)
+|+++.++.+++.+++++++++++|++....... .. . ..++++......
T Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~------~~----~---------------------~~~~~~~~~~~~ 123 (488)
T PRK09088 75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR------TD----V---------------------EDLAAFIASADA 123 (488)
T ss_pred EeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc------cc----c---------------------cchhhhhhhccc
Confidence 9999999999999999999999999976432210 00 0 111122111100
Q ss_pred -CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH-HHHHHcCc
Q 005468 246 -NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ-VMTVYSGV 323 (695)
Q Consensus 246 -~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~-~~~l~~G~ 323 (695)
.........++++++++|||||||.||+|++||+++...+........+..+|++++.+|++|.+++... +.++..|+
T Consensus 124 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~ 203 (488)
T PRK09088 124 LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGG 203 (488)
T ss_pred cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence 0111223456889999999999999999999999998877766666667889999999999999998874 45788899
Q ss_pred EEeEec-CChhhHHHHHH--hcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 005468 324 AVGFYQ-GDNMKLMDDMA--ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (695)
Q Consensus 324 ~~~~~~-~~~~~l~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l 400 (695)
++++.+ +++..++..+. ++++|+++++|+++..+.+.... +
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------~-- 247 (488)
T PRK09088 204 SILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGF----------------------------------D-- 247 (488)
T ss_pred EEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCc----------------------------------C--
Confidence 998766 67888888885 48999999999999877542000 0
Q ss_pred HHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC---CCCCCCcCCCccCcEEEEe
Q 005468 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG---DNLSGHVGSPNAACEIKLV 477 (695)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~~~~~v~i~ 477 (695)
....+++|.+++||++++....+.+.+. |+++++.||+||++.+....... ....+++|.|.++++++|+
T Consensus 248 ------~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~ 320 (488)
T PRK09088 248 ------AAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVV 320 (488)
T ss_pred ------ccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEE
Confidence 0001489999999999999988887765 89999999999998654322111 2356889999999999999
Q ss_pred ecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeec
Q 005468 478 DVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557 (695)
Q Consensus 478 d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~ 557 (695)
| +++..++.|+ .|||+|+|++++.||+++++.|++.|+.+|||+|||+|++|++|.++|.||.||+||+ +|++|+
T Consensus 321 d-~~~~~~~~g~---~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~ 395 (488)
T PRK09088 321 D-DQGNDCPAGV---PGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFIS-GGENVY 395 (488)
T ss_pred C-CCCCCCcCCC---ceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEe-CCEEEC
Confidence 8 5566666665 8999999999999999999999999988999999999999999999999999999996 899999
Q ss_pred hHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhc
Q 005468 558 AEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREA 634 (695)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 634 (695)
|.+||++|.++|.|.+++|++.++ ++..+++|++.++. .. + .+++.++++ .
T Consensus 396 ~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~----------~-------~~~l~~~~~-~ 449 (488)
T PRK09088 396 PAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGA--------PL----------D-------LERIRSHLS-T 449 (488)
T ss_pred HHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCC--------CC----------C-------HHHHHHHHH-h
Confidence 999999999999999999999654 45678888876531 00 0 344555554 6
Q ss_pred CCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 635 QLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 635 ~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.++.|++|..|.+++++| +|++||++|++|++++.+
T Consensus 450 ~l~~~~~p~~i~~~~~iP------~t~~gKi~r~~l~~~~~~ 485 (488)
T PRK09088 450 RLAKYKVPKHLRLVDALP------RTASGKLQKARLRDALAA 485 (488)
T ss_pred hCcCCCCCCEEEEcccCC------CCCCCceeHHHHHHHHHh
Confidence 789999999999999999 999999999999998875
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-64 Score=560.91 Aligned_cols=484 Identities=21% Similarity=0.241 Sum_probs=381.9
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEccCChhHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGI-SKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv-~~gd~V~i~~~n~~e~~~~~lA 157 (695)
.|+.++|..++ .|+++|+.+. + ..+||.||.+++.++|.+|.+.|+ ++||+|+|+++|+++|+++++|
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA 71 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA 71 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 47888887754 7999999753 2 359999999999999999999999 7999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++.+++.+++++++++++|++......+.+.. .+.++.+ .++.. .+.
T Consensus 72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i-~~~~~----------------~~~ 132 (540)
T PRK13388 72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRVL-DVDTP----------------AYA 132 (540)
T ss_pred HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceEE-Eccch----------------hhh
Confidence 9999999999999999999999999999999999887665554331 2233332 22211 122
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHH-
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV- 316 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~- 316 (695)
+++..... ..+.....++++++++|||||||.||||+++|+++..........+++.++|++++.+|++|.+++...+
T Consensus 133 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 211 (540)
T PRK13388 133 ELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWA 211 (540)
T ss_pred hhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHH
Confidence 33221111 1122235679999999999999999999999999998887777778899999999999999999987754
Q ss_pred HHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 005468 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (695)
Q Consensus 317 ~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (695)
.++..|+++++.+ .++..+++.|+++++|++..+|..+..+..... .. .
T Consensus 212 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~-----------------------------~~-~ 261 (540)
T PRK13388 212 PAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPE-----------------------------RP-D 261 (540)
T ss_pred HHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCC-----------------------------Cc-c
Confidence 4789999998876 689999999999999999999999887654100 00 0
Q ss_pred hhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEE
Q 005468 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475 (695)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~ 475 (695)
....+++.+ + |++++++....|.+.+++++++.||+||++.+++.. .....+++|.|++++++
T Consensus 262 ------------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--~~~~~~~vG~p~~g~~i- 324 (540)
T PRK13388 262 ------------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVRE--PGTPPGSIGRGAPGVAI- 324 (540)
T ss_pred ------------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecC--CCCCCCCCCCCCCCcEE-
Confidence 000356643 3 556788888888888899999999999998665532 23456789999999765
Q ss_pred EeecCCCCCC------CCCC----CCCcceEEEe-CCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecC
Q 005468 476 LVDVPEMNYT------SEDQ----PCPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544 (695)
Q Consensus 476 i~d~~~~~~~------~~~~----~~~~GEl~v~-g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (695)
++.+....+ ..|. +...|||+++ |++++.||+++|+.+.+.| .+|||+|||+|++|+||+++++||+
T Consensus 325 -~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~ 402 (540)
T PRK13388 325 -YNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRT 402 (540)
T ss_pred -EcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccC
Confidence 332211111 1111 1137999998 9999999999999999998 6899999999999999999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005468 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARA 621 (695)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (695)
||+||+ +|++|+|.+||+++.+||+|.+|+|+|.++ ++.+++++++.++. .++
T Consensus 403 ~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~--------~~~--------------- 458 (540)
T PRK13388 403 ADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGA--------TFD--------------- 458 (540)
T ss_pred CceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCC--------cCC---------------
Confidence 999997 899999999999999999999999999654 35677777776531 011
Q ss_pred HHHHHHHHHHHh-cCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHH
Q 005468 622 AVLADMDSLGRE-AQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYF 674 (695)
Q Consensus 622 ~i~~~l~~~~~~-~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~ 674 (695)
.++++++++. ..|+.|++|..+++++++| +|++||++|++|++..
T Consensus 459 --~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP------~t~~GKv~R~~L~~~~ 504 (540)
T PRK13388 459 --PDAFAAFLAAQPDLGTKAWPRYVRIAADLP------STATNKVLKRELIAQG 504 (540)
T ss_pred --HHHHHHHHHhhccCCcccCCcEEEEeccCC------CCCcceeeHHhHHHhc
Confidence 2334444432 3699999999999999999 9999999999998864
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-63 Score=557.49 Aligned_cols=510 Identities=22% Similarity=0.291 Sum_probs=403.3
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..++.++|..+++.+||++|+.+. + +.+||.||.+++.++|.+|.+.|+++|++|+|+++|+++|+++++|
T Consensus 32 ~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA 102 (567)
T PRK06178 32 ERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFG 102 (567)
T ss_pred cccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 368999999999999999999764 3 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCC--CCCC--CC---cCCC
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD--QIPS--LP---ITTG 230 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~--~~~~--~~---~~~~ 230 (695)
|+++|++++|++|..+.+++.+++++++++++++++...+.+.+..... .++.+++.+.... .... .. ....
T Consensus 103 ~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (567)
T PRK06178 103 ILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSLRAPR 181 (567)
T ss_pred HHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEecccccccccccccccccccccc
Confidence 9999999999999999999999999999999999988877766554433 2444444332110 0000 00 0000
Q ss_pred ceEeeHHHHHhcccc--CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc-ccccCCCcEEEEeCChh
Q 005468 231 VQILTYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPLA 307 (695)
Q Consensus 231 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~d~~l~~~pl~ 307 (695)
.....+.++.+.... .........++++++|+|||||||.||||++||++++..+..... ...+..+|++++++|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 261 (567)
T PRK06178 182 LAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEF 261 (567)
T ss_pred ccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchH
Confidence 000112222221111 111123356789999999999999999999999999876654433 25677899999999999
Q ss_pred hHHHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 005468 308 HIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (695)
Q Consensus 308 h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (695)
|.+|+.. .+.+++.|+++++.+ .++..+++.++++++|.+.++|..+..+..... .
T Consensus 262 ~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~--~-------------------- 319 (567)
T PRK06178 262 WIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR--F-------------------- 319 (567)
T ss_pred HHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC--C--------------------
Confidence 9999865 566899999999887 689999999999999999999998877654100 0
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhcCCcEEEEE--EcCCCCcHHHHHHHHHHhCCcccc-ccccccccccccccCC---C-
Q 005468 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMG--SGASPLSPDVLDFLKICFGGRVTE-GYGMTETSCLISQLDE---G- 458 (695)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~--~gG~~l~~~~~~~~~~~~g~~v~~-~YG~TE~~~~~~~~~~---~- 458 (695)
......+++.+. +.++++++++.+.|+..+|..++. .||+||++..+..... .
T Consensus 320 --------------------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~ 379 (567)
T PRK06178 320 --------------------AEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDD 379 (567)
T ss_pred --------------------CCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCc
Confidence 000003566554 446899999999999988877775 7999998765443221 1
Q ss_pred ---CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC
Q 005468 459 ---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535 (695)
Q Consensus 459 ---~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d 535 (695)
...++++|.|+||++++++|++++..++.|+ .|||+++|++++.|||++++.+.+.| .+|||+|||+|++++|
T Consensus 380 ~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~---~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~ 455 (567)
T PRK06178 380 FDLLSQPVFVGLPVPGTEFKICDFETGELLPLGA---EGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQ 455 (567)
T ss_pred cccccCCcccccccCCcEEEEEcCCCCCcCCCCC---ceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecC
Confidence 1345679999999999999977777777776 89999999999999999999999888 6899999999999999
Q ss_pred CcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHH
Q 005468 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQ 612 (695)
Q Consensus 536 G~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~ 612 (695)
|+++|+||+||+||+ +|++|+|.+||+++.++|+|.+++|++.++ ++.++++|+++++. ...
T Consensus 456 g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~~------ 520 (567)
T PRK06178 456 GFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGA--------DLT------ 520 (567)
T ss_pred CeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCC--------cCC------
Confidence 999999999999997 899999999999999999999999998653 36788899887531 011
Q ss_pred hhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 613 LCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 613 ~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.++|+++++ ++++.|++|. +++++++| +|++||++|++|++.++++
T Consensus 521 -----------~~~l~~~~~-~~l~~~~~p~-i~~v~~iP------~t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 521 -----------AAALQAWCR-ENMAVYKVPE-IRIVDALP------MTATGKVRKQDLQALAEEL 566 (567)
T ss_pred -----------HHHHHHHHH-hcCcccCCce-EEEeccCC------CCCccceeHHHHHHHHHhh
Confidence 345666665 6899999996 88899999 9999999999999888653
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=555.16 Aligned_cols=484 Identities=17% Similarity=0.201 Sum_probs=394.6
Q ss_pred CHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHH
Q 005468 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (695)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (695)
++.+.|.+.++.+|+++|+... + +.+||+||.+++.++|..|.+.|+++|++|+|+++|+.+|+++++||+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~ 71 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI 71 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 5788999999999999998754 2 359999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHH
Q 005468 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (695)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (695)
++|++++|+++.++.+++.++++.++++.++++......... .. ++.++. ...+
T Consensus 72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~-------~~-~~~~~~------------------~~~~ 125 (502)
T TIGR01734 72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG-------TQ-IITLSA------------------LEQA 125 (502)
T ss_pred HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC-------Cc-eEEchH------------------hhhh
Confidence 999999999999999999999999999999998764322211 11 111111 1111
Q ss_pred HhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHHH
Q 005468 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319 (695)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l 319 (695)
...... ........++++++++|||||||.||+|+++|+++...+.+....+.+..++++++.+|++|.+++...+.++
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l 204 (502)
T TIGR01734 126 ETSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCL 204 (502)
T ss_pred hhhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHH
Confidence 111111 1112234678999999999999999999999999999888777778888999999999999999998888899
Q ss_pred HcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 005468 320 YSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (695)
Q Consensus 320 ~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (695)
..|+++++.+ .++..+++.+.++++|.+.++|.++..++.....
T Consensus 205 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~-------------------------------- 252 (502)
T TIGR01734 205 ASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF-------------------------------- 252 (502)
T ss_pred HCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc--------------------------------
Confidence 9999999876 4788999999999999999999998766432000
Q ss_pred hhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCC-----CCCCCCCcCCCc
Q 005468 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-----GDNLSGHVGSPN 469 (695)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~-----~~~~~~~vG~p~ 469 (695)
.....++++.+++||+++++++.+.+.+.+ ++++++.||+||+++.++.... ......++|.|.
T Consensus 253 ----------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~ 322 (502)
T TIGR01734 253 ----------NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAK 322 (502)
T ss_pred ----------ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCcccccccc
Confidence 000115899999999999999999999887 7899999999998754443221 123446799999
Q ss_pred cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhccc---CCCCeeecccEEEEecCCcEEEEecCCC
Q 005468 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (695)
Q Consensus 470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (695)
++++++|+| +++..++.|+ .|||+++|++++.||+++++.+.+.| +.++||+|||+|++|++ +++++||.+|
T Consensus 323 ~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d 397 (502)
T TIGR01734 323 PDMNLFIMD-EEGEPLPEGE---KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDF 397 (502)
T ss_pred CCCEEEEEC-CCCCCCCCCC---eeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccC
Confidence 999999999 4456666665 89999999999999999999998876 23469999999999976 9999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCcCcceEEEEeeC----CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005468 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS----FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAA 622 (695)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~----~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (695)
+|++ +|++|+|++||+++.++|.|.+++|++.. ..+.++++|++.+.... .. ..
T Consensus 398 ~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~----~~ 455 (502)
T TIGR01734 398 QIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFE-----------------KE----FQ 455 (502)
T ss_pred eEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccc-----------------cc----hh
Confidence 9997 89999999999999999999999999842 23578899988763210 01 12
Q ss_pred HHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 623 VLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 623 i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
+.+++++.++ ++|+.|++|+.+++++++| +|++||++|++|++++.
T Consensus 456 ~~~~i~~~~~-~~l~~~~~P~~~~~v~~lP------~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 456 LTKAIKKELK-KSLPAYMIPRKFIYRDQLP------LTANGKIDRKALAEEVN 501 (502)
T ss_pred hHHHHHHHHh-hhChhhcCCcEEEEccccC------CCCCCcccHHHHHHhhc
Confidence 2355566665 6899999999999999999 99999999999999764
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-64 Score=618.11 Aligned_cols=481 Identities=17% Similarity=0.194 Sum_probs=401.1
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..++.++|...++++||++|+.+. + +.+||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++|
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 368999999999999999999764 3 3499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|+++||+++.++.+++.++++++++++++++......+.. .+.+. ++.++
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~-~~~~~--------------------- 581 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD----VPDLT-SLCYN--------------------- 581 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhccc----CCCce-eeecc---------------------
Confidence 99999999999999999999999999999999998765544322 11111 11111
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (695)
....... ..+.....++++++|+|||||||.||||+++|+++++.+.+....+++.++|++++..|++|..++...+.
T Consensus 582 ~~~~~~~--~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 659 (1296)
T PRK10252 582 APLAPQG--AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFW 659 (1296)
T ss_pred ccccccc--CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHH
Confidence 1000000 11112236789999999999999999999999999999998888899999999999999999999988899
Q ss_pred HHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+|+.|+++++.+ .++..+.+.|+++++|++.++|+++..+.+.......
T Consensus 660 ~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~--------------------------- 712 (1296)
T PRK10252 660 PFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA--------------------------- 712 (1296)
T ss_pred HHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc---------------------------
Confidence 999999999875 4889999999999999999999999887653111000
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-------CCCCCCcC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-------DNLSGHVG 466 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-------~~~~~~vG 466 (695)
.....++|.+++||+++++++.+.|.+.++++++|.||+||++..++..... .....++|
T Consensus 713 -------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG 779 (1296)
T PRK10252 713 -------------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIG 779 (1296)
T ss_pred -------------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcc
Confidence 0001489999999999999999999998899999999999998766543322 12346799
Q ss_pred CCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCC------CeeecccEEEEecCCcEEE
Q 005468 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED------GWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~------gw~~TGDlg~~~~dG~l~i 540 (695)
.|+++++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|++.|..+ +||+|||+|++++||.+++
T Consensus 780 ~p~~~~~~~i~d-~~~~~~~~g~---~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~ 855 (1296)
T PRK10252 780 YPVWNTGLRILD-ARMRPVPPGV---AGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEY 855 (1296)
T ss_pred cccCCCEEEEEC-CCCCCCCCCC---ceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEE
Confidence 999999999999 6777778776 89999999999999999999999998543 4999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEee-------CC--CCeEEEEEEeCHHHHHHHHHHcCCCcccHH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGD-------SF--NSALVAIVSVDQDALKAWAASEGIQYENLE 611 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~-------~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~ 611 (695)
+||+||+||+ +|++|+|.|||++|.+||+|.+++|++. .. ...++|+|++..+. ..+
T Consensus 856 ~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~--------~~~----- 921 (1296)
T PRK10252 856 LGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGL--------PLD----- 921 (1296)
T ss_pred ecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCC--------CCC-----
Confidence 9999999998 8999999999999999999999987653 11 24799999987531 011
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 612 QLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 612 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
.++|+++++ .+||.|++|..++.++++| +|++||++|++|.+
T Consensus 922 ------------~~~l~~~l~-~~Lp~~~~P~~~~~~~~lP------~t~~GKidr~~L~~ 963 (1296)
T PRK10252 922 ------------TSALQAQLR-ERLPPHMVPVVLLQLDQLP------LSANGKLDRKALPL 963 (1296)
T ss_pred ------------HHHHHHHHH-hhCchhcCCcEEEEecCCC------CCCCcChhHHhcCC
Confidence 344555665 7899999999999999999 99999999999975
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=674.05 Aligned_cols=482 Identities=19% Similarity=0.200 Sum_probs=408.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..++.++|.+.++++||++|+.+. + +.+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++||
T Consensus 510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la 580 (5163)
T PRK12316 510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA 580 (5163)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 568999999999999999999864 3 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|+++||+++.++.+++.+++++++++++|++......+.. ..... ++.++...
T Consensus 581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~----~~~~~-~~~~~~~~------------------ 637 (5163)
T PRK12316 581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL----AAGVQ-VLDLDRPA------------------ 637 (5163)
T ss_pred HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc----ccCce-EEEecCcc------------------
Confidence 99999999999999999999999999999999998765433211 11122 23332211
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (695)
.... ......+.....++++++|+|||||||.||||+++|+++++.+.+....+++.++|++++++|++|++++...+.
T Consensus 638 ~~~~-~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~ 716 (5163)
T PRK12316 638 AWLE-GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFW 716 (5163)
T ss_pred hhhc-cCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHH
Confidence 0000 001112223456899999999999999999999999999999998888889999999999999999999988999
Q ss_pred HHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+|+.|+++++.+ .++..+++.|+++++|++.++|++++.+.+....
T Consensus 717 ~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------------------------ 766 (5163)
T PRK12316 717 PLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV------------------------------ 766 (5163)
T ss_pred HHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc------------------------------
Confidence 999999999975 5899999999999999999999999988642000
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCC--CCCCCCCcCCCcc
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE--GDNLSGHVGSPNA 470 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~ 470 (695)
...+++|.+++||+++++++.+.|.+.+ +++++|.||+||++..++.... ......++|+|++
T Consensus 767 --------------~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~ 832 (5163)
T PRK12316 767 --------------ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIA 832 (5163)
T ss_pred --------------ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccC
Confidence 0014899999999999999999997765 6899999999999854443322 2245578999999
Q ss_pred CcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC------CCCeeecccEEEEecCCcEEEEecC
Q 005468 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGRLKIIDRK 544 (695)
Q Consensus 471 ~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (695)
|++++|+| +++..++.|. .|||+|+|+++++||+++|+.|++.|. .++||+|||+|++++||.|+|+||+
T Consensus 833 ~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~ 908 (5163)
T PRK12316 833 NLACYILD-ANLEPVPVGV---LGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRI 908 (5163)
T ss_pred CCEEEEEC-CCCCCCCCCC---ceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeeccc
Confidence 99999999 5677778786 899999999999999999999999883 3469999999999999999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005468 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVL 624 (695)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 624 (695)
||+||+ +|++|+|.|||++|.+||.|.+|+|++.+ ++.++|+|++.++. . ...
T Consensus 909 d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~--------~-----------------~~~ 961 (5163)
T PRK12316 909 DHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEG--------G-----------------DWR 961 (5163)
T ss_pred CCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCC--------C-----------------CCH
Confidence 999998 89999999999999999999999999987 78999999987631 0 114
Q ss_pred HHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHH
Q 005468 625 ADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYF 674 (695)
Q Consensus 625 ~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~ 674 (695)
++|+++++ .+||.|++|..|++++++| +|++||++|++|.+.+
T Consensus 962 ~~l~~~l~-~~Lp~y~vP~~i~~v~~lP------~t~~GKidr~~L~~~~ 1004 (5163)
T PRK12316 962 EALKAHLA-ASLPEYMVPAQWLALERLP------LTPNGKLDRKALPAPE 1004 (5163)
T ss_pred HHHHHHHH-hhCCCccCCCeEEEHhhCC------CCCCCChhHHhhcCcc
Confidence 55667775 7899999999999999999 9999999999998654
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=565.48 Aligned_cols=498 Identities=23% Similarity=0.271 Sum_probs=389.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.+.++++||++|+.+. + +.+||+||.+++.++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 35 ~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~l 105 (600)
T PRK08279 35 SKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWL 105 (600)
T ss_pred CcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4568999999999999999999864 3 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.+..........++..++.... ....+
T Consensus 106 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 175 (600)
T PRK08279 106 GLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLD----------DPEGY 175 (600)
T ss_pred HHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcccc----------ccccH
Confidence 99999999999999999999999999999999999988777665544433333333333321100 01234
Q ss_pred HHHHhccccC----CCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHH
Q 005468 237 SNLLSQGRSN----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (695)
Q Consensus 237 ~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (695)
.++....... ........++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~ 255 (600)
T PRK08279 176 EDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGG 255 (600)
T ss_pred HHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhH
Confidence 4443222111 111233457899999999999999999999999999999887777889999999999999999999
Q ss_pred HHHH-HHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcC
Q 005468 313 ANQV-MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (695)
Q Consensus 313 ~~~~-~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (695)
...+ .++..|+++++.+ +++..+++.++++++|++.++|++++.+.......
T Consensus 256 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~-------------------------- 309 (600)
T PRK08279 256 TVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP-------------------------- 309 (600)
T ss_pred HHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc--------------------------
Confidence 8755 4678888888876 68999999999999999999999998776421000
Q ss_pred CCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-ccccccccccccccccccCCCCCCCCCcCCCc
Q 005468 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (695)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (695)
.....++|.+ +|+++++++.+.|.+.++. .+++.||+||++..++.. ....+++|.+.
T Consensus 310 ----------------~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~ 368 (600)
T PRK08279 310 ----------------TDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---FNFDGTVGRVP 368 (600)
T ss_pred ----------------cccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---CCCCccccccc
Confidence 0001367754 4777999999999998876 599999999987543321 23456778766
Q ss_pred c----CcEEEEeecCCC----------CCCCCCCCCCcceEE--EeCCccchhccCChhhhhccc------CCCCeeecc
Q 005468 470 A----ACEIKLVDVPEM----------NYTSEDQPCPRGEIC--VRGPLIFKGYYKDEIQTKEVI------DEDGWFHTG 527 (695)
Q Consensus 470 ~----~~~v~i~d~~~~----------~~~~~~~~~~~GEl~--v~g~~v~~gY~~~~~~t~~~~------~~~gw~~TG 527 (695)
+ +..+...+.+.+ ..++.|+ .|||+ ++|++++.|| ++++.|.+.| +.++||+||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~---~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TG 444 (600)
T PRK08279 369 LWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGE---VGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTG 444 (600)
T ss_pred ccccccceeeeeccCcCceeeCCCCccccCCCCC---ceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeec
Confidence 6 333322221111 1233443 89998 7899999999 8998888776 236899999
Q ss_pred cEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC----CCeEEEEEEeCHHHHHHHHHHc
Q 005468 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF----NSALVAIVSVDQDALKAWAASE 603 (695)
Q Consensus 528 Dlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~----~~~~va~vv~~~~~~~~~~~~~ 603 (695)
|+|++|+||++++.||.||+||+ +|++|+|.|||+++.+||+|.+|+|+|.+. +...+++++..++.
T Consensus 445 Dlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~-------- 515 (600)
T PRK08279 445 DLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGA-------- 515 (600)
T ss_pred ceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCc--------
Confidence 99999999999999999999997 899999999999999999999999998642 33445555544211
Q ss_pred CCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 604 GIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
..+ .++++++++ .+|+.|++|+.|++++++| +|++||++|++|++++.+.
T Consensus 516 ~~~-----------------~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 516 EFD-----------------LAALAAHLY-ERLPAYAVPLFVRLVPELE------TTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred cCC-----------------HHHHHHHHH-hhCccccCCeEEEeecCCC------CCcchhhhHHHHhhcCCCc
Confidence 011 456666776 6899999999999999999 9999999999999877655
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=544.56 Aligned_cols=424 Identities=19% Similarity=0.169 Sum_probs=350.7
Q ss_pred eeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEec
Q 005468 114 MTYGEAGTARTEVGSGLIYHGI-SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192 (695)
Q Consensus 114 ~Ty~el~~~~~~lA~~L~~~gv-~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~ 192 (695)
+.|+||.+++.++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++
T Consensus 20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~ 99 (452)
T PRK07445 20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL 99 (452)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence 6899999999999999999998 579999999999999999999999999999999999999999999999999999987
Q ss_pred ccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCc
Q 005468 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272 (695)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 272 (695)
.+..... ... .. .......++++++++|||||||.||
T Consensus 100 ~~~~~~~---------------~~~----------------~~------------~~~~~~~~~~~~~i~~TSGTTG~PK 136 (452)
T PRK07445 100 DQLKLSH---------------PPP----------------LP------------SQGILPNLETGWIMIPTGGSSGQIR 136 (452)
T ss_pred Ccccccc---------------CCC----------------CC------------ccccCCCCCCcEEEEeCCCCCCCCc
Confidence 6432100 000 00 0001235689999999999999999
Q ss_pred eEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecC-ChhhHHHHHHhcCCeEEeech
Q 005468 273 GAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSVP 351 (695)
Q Consensus 273 gV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~-~~~~l~~~i~~~~~t~~~~~P 351 (695)
||++||+++.+.+......+.+.+ ++.++.+|++|.+|+...+.+++.|+++++.+. +..........+++|++.++|
T Consensus 137 gV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP 215 (452)
T PRK07445 137 FAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVP 215 (452)
T ss_pred EEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehH
Confidence 999999999888877666566654 467889999999999888889999999998762 233333344578899999999
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHH
Q 005468 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431 (695)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~ 431 (695)
+++..+.+... ...+++|.+++||+++++++.+.+
T Consensus 216 ~~l~~l~~~~~---------------------------------------------~~l~~l~~i~~gG~~l~~~~~~~~ 250 (452)
T PRK07445 216 TQLQRLLQLRP---------------------------------------------QWLAQFRTILLGGAPAWPSLLEQA 250 (452)
T ss_pred HHHHHHHhhCh---------------------------------------------hhhhcceEEEECCccCCHHHHHHH
Confidence 99998764100 001489999999999999999988
Q ss_pred HHHhCCccccccccccccccccccCCCC--CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccC
Q 005468 432 KICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK 509 (695)
Q Consensus 432 ~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~ 509 (695)
.. +++++++.||+||++..++...+.+ ...+++|+|+|+++++|++ + ..|||+|+|++++.|||+
T Consensus 251 ~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~---------g---~~Gel~v~g~~~~~gY~~ 317 (452)
T PRK07445 251 RQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA---------N---QTGNITIQAQSLALGYYP 317 (452)
T ss_pred Hh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC---------C---CcceEEEeCCccchhhcC
Confidence 76 4899999999999986554443332 3457899999999999982 2 279999999999999998
Q ss_pred ChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEE
Q 005468 510 DEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALV 586 (695)
Q Consensus 510 ~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~v 586 (695)
++. +.+|||+|||+|++|+||+++|.||.||+||+ +|++|+|.+||+++.+||+|.+|+|+|.++ ++.++
T Consensus 318 ~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~ 390 (452)
T PRK07445 318 QIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVT 390 (452)
T ss_pred Ccc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEE
Confidence 643 35799999999999999999999999999996 899999999999999999999999999764 46788
Q ss_pred EEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCC
Q 005468 587 AIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIK 666 (695)
Q Consensus 587 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~ 666 (695)
|+|++.++. .+ .++++++++ ++|+.|++|+.+++++++| +|++||++
T Consensus 391 a~vv~~~~~---------~~-----------------~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~ 437 (452)
T PRK07445 391 AIYVPKDPS---------IS-----------------LEELKTAIK-DQLSPFKQPKHWIPVPQLP------RNPQGKIN 437 (452)
T ss_pred EEEEeCCCC---------CC-----------------HHHHHHHHH-HhCCcccCCeEEEEecCCC------CCCCcccC
Confidence 998876521 00 345566665 6899999999999999999 99999999
Q ss_pred hHHHHHHHHHHHH
Q 005468 667 RPQAKQYFAKAIA 679 (695)
Q Consensus 667 R~~l~~~~~~~i~ 679 (695)
|++|++.|.++|.
T Consensus 438 r~~L~~~~~~~~~ 450 (452)
T PRK07445 438 RQQLQQIAVQRLG 450 (452)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998774
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-63 Score=557.07 Aligned_cols=511 Identities=21% Similarity=0.298 Sum_probs=399.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..+++.++|...++++|+++|+.+. + +.+||+||.+++.++|++|.+.|+++||+|+++++|++++++++|
T Consensus 22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 92 (563)
T PRK06710 22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY 92 (563)
T ss_pred CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 3468999999999999999999764 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCC-CCCCC-----CCcC--
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID-DQIPS-----LPIT-- 228 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~-~~~~~-----~~~~-- 228 (695)
||+++|++++|+++..+.+++.++++.+++++++++......+...... .....+++..... ..... ....
T Consensus 93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (563)
T PRK06710 93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA-TKIEHVIVTRIADFLPFPKNLLYPFVQKKQ 171 (563)
T ss_pred HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh-hccceeEEeccccccccccccccchhhccc
Confidence 9999999999999999999999999999999999987655444332211 1122222221000 00000 0000
Q ss_pred --------CCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc-ccccC-CCc
Q 005468 229 --------TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFY-PSD 298 (695)
Q Consensus 229 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~-~~d 298 (695)
.......|..+.... ..........++++++++|||||||.||||.++|+++......... .+... .++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~ 250 (563)
T PRK06710 172 SNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEE 250 (563)
T ss_pred ccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCc
Confidence 000001122221111 1011111123578999999999999999999999999765433222 23333 456
Q ss_pred EEEEeCChhhHHHHHHH-HHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHH
Q 005468 299 VYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376 (695)
Q Consensus 299 ~~l~~~pl~h~~~~~~~-~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 376 (695)
++++++|++|.+++... +.+++.|+++++.+ +++..+++.|+++++|++.++|+++..+......
T Consensus 251 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------- 317 (563)
T PRK06710 251 VVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLL------------- 317 (563)
T ss_pred eEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcc-------------
Confidence 88999999999998764 45788999998876 6899999999999999999999999887642000
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccC
Q 005468 377 NAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD 456 (695)
Q Consensus 377 ~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~ 456 (695)
. ....+++|.+++||+++++++.+++.+.+|+++++.||+||++.++....
T Consensus 318 ------------------~-----------~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 368 (563)
T PRK06710 318 ------------------K-----------EYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNF 368 (563)
T ss_pred ------------------c-----------cCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCc
Confidence 0 00014789999999999999999999988999999999999987654332
Q ss_pred C-CCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC
Q 005468 457 E-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535 (695)
Q Consensus 457 ~-~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d 535 (695)
. .....+++|.|.+++.++++|++++..++.|. .|||+++|+.++.||+++++.+...| .+|||+|||+|+++++
T Consensus 369 ~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~ 444 (563)
T PRK06710 369 LWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGE---IGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDED 444 (563)
T ss_pred ccccccCCccCCCCCCCeEEEEECCCCccCCCCC---ceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCC
Confidence 2 22446789999999999999977777777776 89999999999999999999999888 6899999999999999
Q ss_pred CcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHH
Q 005468 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQ 612 (695)
Q Consensus 536 G~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~ 612 (695)
|.++++||.||+||+ +|++|+|.+||+++.++|.|.+++|++.++ ++.++++|++.+.. ...
T Consensus 445 g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~~------ 509 (563)
T PRK06710 445 GFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGT--------ECS------ 509 (563)
T ss_pred CcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCC--------CCC------
Confidence 999999999999997 899999999999999999999999999653 46788888877631 011
Q ss_pred hhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 613 LCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 613 ~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.++++++++ ++|+.|++|..|.+++++| +|++||++|++|++.++.+
T Consensus 510 -----------~~~l~~~~~-~~l~~~~~P~~~~~v~~iP------~t~~GKi~r~~L~~~~~~~ 556 (563)
T PRK06710 510 -----------EEELNQFAR-KYLAAYKVPKVYEFRDELP------KTTVGKILRRVLIEEEKRK 556 (563)
T ss_pred -----------HHHHHHHHH-HhcccccCCcEEEEcccCC------CCccchhhHHHHHHHHhhc
Confidence 345556665 6799999999999999999 9999999999999877643
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=558.09 Aligned_cols=506 Identities=25% Similarity=0.351 Sum_probs=400.8
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEccCChhHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..++.++|.++++++|+++|+.+. + +.+||+||.+++.++|++|. +.|+++||+|+++++|+++++++++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 94 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF 94 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999753 2 35999999999999999997 6899999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCC-CC-------------
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD-QI------------- 222 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~-~~------------- 222 (695)
||+++|++++|++|.++.+++.+++++++++++++++.....+.......+ ...++.++.... ..
T Consensus 95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (560)
T PRK08751 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLGFPKAALVNFVVKYV 173 (560)
T ss_pred HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcccccchhhhhhhhhh
Confidence 999999999999999999999999999999999999877665555443333 333433321000 00
Q ss_pred CC-CCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccc----cCC-
Q 005468 223 PS-LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYP- 296 (695)
Q Consensus 223 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~----~~~- 296 (695)
.. ...........+.+..........+.....++++++++|||||||.||||++||+++...+......+. +.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~ 253 (560)
T PRK08751 174 KKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEG 253 (560)
T ss_pred hccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCC
Confidence 00 000000112344555443332222333456789999999999999999999999999887765443332 333
Q ss_pred CcEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHH
Q 005468 297 SDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373 (695)
Q Consensus 297 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 373 (695)
.+++++.+|++|.+++.. .+.++..|++.++.. .++..+++.++++++|++.++|.++..+.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----------- 322 (560)
T PRK08751 254 CEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG----------- 322 (560)
T ss_pred CceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC-----------
Confidence 357788999999999875 455677777776654 588999999999999999999999988765200
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccccc
Q 005468 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS 453 (695)
Q Consensus 374 ~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~ 453 (695)
.+...+ +++|.+++||+++++.+.+.|++.+|+++++.||+||+++.++
T Consensus 323 -----------------------~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 371 (560)
T PRK08751 323 -----------------------FDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAAC 371 (560)
T ss_pred -----------------------cCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCcee
Confidence 000001 4799999999999999999999988999999999999987665
Q ss_pred ccCCC-CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEE
Q 005468 454 QLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532 (695)
Q Consensus 454 ~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~ 532 (695)
..... ....+++|.|+++++++++| +++..++.|+ .|||+|+|+.++.||+++++.+.+.|+.+|||+|||+|++
T Consensus 372 ~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~ 447 (560)
T PRK08751 372 INPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGE---IGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARM 447 (560)
T ss_pred cccccccccCCCcCccCCCceEEEEC-CCCCCCCCCC---ceEEEEecCccchhhcCChhhhhhccccCCCccccceEEE
Confidence 44322 24467899999999999999 6667777776 8999999999999999999999999988999999999999
Q ss_pred ecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCccc
Q 005468 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYEN 609 (695)
Q Consensus 533 ~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~ 609 (695)
|++|++++.||.+|+||+ +|++|+|.+||+++..+|+|.+++|+|.++ ++.++++++..... ..
T Consensus 448 ~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~---------~~--- 514 (560)
T PRK08751 448 DEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPA---------LT--- 514 (560)
T ss_pred cCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCC---------CC---
Confidence 999999999999999997 899999999999999999999999999654 34566666654310 11
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHH
Q 005468 610 LEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQY 673 (695)
Q Consensus 610 ~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~ 673 (695)
.+++++.++ .+|+.|++|..|++++++| +|++||++|++|++.
T Consensus 515 --------------~~~l~~~~~-~~l~~~~~P~~v~~v~~lP------~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 515 --------------AEDVKAHAR-ANLTGYKQPRIIEFRKELP------KTNVGKILRRELRDA 557 (560)
T ss_pred --------------HHHHHHHHH-HhhhhccCCeEEEEhhhCC------CCccccccHHHHHHh
Confidence 234555554 6799999999999999999 999999999999875
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-64 Score=669.88 Aligned_cols=502 Identities=19% Similarity=0.250 Sum_probs=418.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+...+++++|.++++++||++|+.+. + +.+||+||.++++++|++|.+.|+++|++|+|+++|+++|++++
T Consensus 4548 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~ 4618 (5163)
T PRK12316 4548 PATRCVHQLVAERARMTPDAVAVVFD---E------EKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGL 4618 (5163)
T ss_pred CccccHHHHHHHHHHhCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 44579999999999999999999864 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|+++||+++.++.+++.+++++++++++|++......+.. ...+. ++.++...
T Consensus 4619 lavl~aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~~~~-~~~~~~~~---------------- 4677 (5163)
T PRK12316 4619 LAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPI----PDGLA-SLALDRDE---------------- 4677 (5163)
T ss_pred HHHHHhCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhccc----ccCcc-eEeecchh----------------
Confidence 9999999999999999999999999999999999998765443311 11111 12221110
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
++ .......+.....++++++|+|||||||.||||+++|+++++.+.+....++++++|++++++|++|+.+....
T Consensus 4678 --~~--~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 4753 (5163)
T PRK12316 4678 --DW--EGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGL 4753 (5163)
T ss_pred --hc--ccCCccCCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhcCCCcCCeEEEecCcchhhHHHHH
Confidence 00 00011122334578999999999999999999999999999999888888899999999999999999999888
Q ss_pred HHHHHcCcEEeEec--C-ChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 316 VMTVYSGVAVGFYQ--G-DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 316 ~~~l~~G~~~~~~~--~-~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
+.+|+.|+++++.+ . ++..+++.|+++++|+++++|++++.+.+.....
T Consensus 4754 ~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---------------------------- 4805 (5163)
T PRK12316 4754 YHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERD---------------------------- 4805 (5163)
T ss_pred HHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhccc----------------------------
Confidence 99999999999977 2 7899999999999999999999999886531100
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC-----CCCCCcC
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-----NLSGHVG 466 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG 466 (695)
...++||.+++||+++++++.+.+.+.+ +++++|+||+||+++.++...... ....++|
T Consensus 4806 ---------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG 4870 (5163)
T PRK12316 4806 ---------------GEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIG 4870 (5163)
T ss_pred ---------------cCCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCCCCccc
Confidence 0115899999999999999998777655 689999999999987665443222 3456899
Q ss_pred CCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCC-------CCeeecccEEEEecCCcEE
Q 005468 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-------DGWFHTGDIGMWIPGGRLK 539 (695)
Q Consensus 467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~-------~gw~~TGDlg~~~~dG~l~ 539 (695)
+|+++++++|+| +++..++.|. .|||+|+|+++++|||++|+.|+++|.. ++||+|||+|++++||.++
T Consensus 4871 ~p~~~~~~~i~d-~~~~~~p~g~---~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~ 4946 (5163)
T PRK12316 4871 TPLGNRSGYVLD-GQLNPLPVGV---AGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVID 4946 (5163)
T ss_pred ccccCCEEEEEC-CCCCcCCCCC---CceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEECCCCcEE
Confidence 999999999999 6677778786 8999999999999999999999999843 3599999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCH
Q 005468 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDP 617 (695)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (695)
|+||+||+||+ +|++|+|.|||+.|.+||.|.+|+|++.+. ++.++|+|++.+.... ...
T Consensus 4947 ~~GR~d~~iki-~G~ri~~~eIE~~l~~~p~V~~a~v~~~~~~~~~~l~a~v~~~~~~~~-----------------~~~ 5008 (5163)
T PRK12316 4947 YLGRVDHQVKI-RGFRIELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALA-----------------DAD 5008 (5163)
T ss_pred EeccccceEee-ccEeecHHHHHHHHHhCCCcceEEEEEeeCCCCcEEEEEEeCCccccc-----------------ccc
Confidence 99999999998 899999999999999999999999998643 4679999998753210 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHH
Q 005468 618 RARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 683 (695)
Q Consensus 618 ~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~ 683 (695)
+....+.++|+++++ .+||.|++|..+++++++| +|++||++|++|.+.+.+.+++.|.
T Consensus 5009 ~~~~~~~~~l~~~l~-~~lp~y~vP~~~~~~~~lP------~t~~GKvdR~~L~~~~~~~~~~~~~ 5067 (5163)
T PRK12316 5009 EAQAELRDELKAALR-ERLPEYMVPAHLVFLARMP------LTPNGKLDRKALPQPDASLLQQAYV 5067 (5163)
T ss_pred ccchhhHHHHHHHHh-ccCchhhCCcceeecccCC------CCCCcccChhhcCCccccccccccC
Confidence 223445677788776 8999999999999999999 9999999999999887766555553
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=550.68 Aligned_cols=506 Identities=25% Similarity=0.329 Sum_probs=397.7
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.++++.+|+++|+.+. + +.+||.||.++++++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 89 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF 89 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4569999999999999999999753 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccc--hhHHHhcccCCCCceEEEEECCCCCCCCCC--C-cCCCc
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT--LNSLLSCLSEVPTVRLIVVIGGIDDQIPSL--P-ITTGV 231 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~--~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~--~-~~~~~ 231 (695)
||+++|++++|+++.++.+++.+++++++++.+|+++.. ...+.+.... ..+..+++++......... . .....
T Consensus 90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (541)
T TIGR03205 90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWGKVGTPQAPIPADP 168 (541)
T ss_pred HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccccccccccccCCCc
Confidence 999999999999999999999999999999999997531 1222221111 1233444443321000000 0 00112
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc-----ccccCCCcEEEEeCCh
Q 005468 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-----GTKFYPSDVYISYLPL 306 (695)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~pl 306 (695)
...++.+++..... ........++++++++|||||||.||||+++|+++......... .......+++++.+|+
T Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 247 (541)
T TIGR03205 169 RIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPL 247 (541)
T ss_pred ccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccH
Confidence 34556666643222 12223456789999999999999999999999998765542211 1122345799999999
Q ss_pred hhHHHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 005468 307 AHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (695)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (695)
+|.+++.. .+.++..|+++++.. .++..+++.|+++++|++.++|+++..+.+...
T Consensus 248 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 305 (541)
T TIGR03205 248 FHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS---------------------- 305 (541)
T ss_pred HHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc----------------------
Confidence 99999877 456788999988776 689999999999999999999999987754100
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCC
Q 005468 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSG 463 (695)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~ 463 (695)
......+++|.+++||+++++++.+++.+.+++++++.||+||++..++..... ....+
T Consensus 306 --------------------~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 365 (541)
T TIGR03205 306 --------------------LEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPG 365 (541)
T ss_pred --------------------ccccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCC
Confidence 000001479999999999999999999988899999999999998766554332 24567
Q ss_pred CcCCCccCcEEEEeec-CCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEe
Q 005468 464 HVGSPNAACEIKLVDV-PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 464 ~vG~p~~~~~v~i~d~-~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (695)
++|.|++++.+++++. +++..++.|. .|||+++|++++.|||++++.+.+.| .++||+|||+++++++|+++++|
T Consensus 366 ~~G~~~~~~~~~v~~~d~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~G 441 (541)
T TIGR03205 366 SIGLMLPGIELDVVSLDDPTKVLPPGE---VGELRIRGPNVTRGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVD 441 (541)
T ss_pred CcceeccCceeEEEecCCCCccCCCCC---eeEEEEecCCccccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEEc
Confidence 8999999999998763 3445555554 89999999999999999999999998 58899999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRA 619 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (695)
|.||+||+ +|++|+|.+||+++.+|+.|.+++|++.++ ++.+++++++.++.. .. +
T Consensus 442 R~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-------~~----------~--- 500 (541)
T TIGR03205 442 RKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAK-------PF----------S--- 500 (541)
T ss_pred cccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCC-------cC----------C---
Confidence 99999996 899999999999999999999999998653 457888888875310 00 0
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHH
Q 005468 620 RAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAK 671 (695)
Q Consensus 620 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~ 671 (695)
.++|.++++ ++|+.|++|..|++++++| +|++||++|++|+
T Consensus 501 ----~~~l~~~~~-~~l~~~~~P~~i~~~~~iP------~t~~gK~~r~~l~ 541 (541)
T TIGR03205 501 ----LDELRAFLA-GKLGKHELPVAVEFVDELP------RTPVGKLSRHELR 541 (541)
T ss_pred ----HHHHHHHHH-hhcccccCCcEEEEeccCC------CCcccceeHhhcC
Confidence 234555554 6799999999999999999 9999999999873
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-64 Score=662.65 Aligned_cols=488 Identities=19% Similarity=0.188 Sum_probs=408.7
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...+++++|.+.++++||++|+.+. ++. +||+||+++++++|+.|.+.|+++|++|+|++++++++++++|
T Consensus 3718 ~~~~~~~~~~~~~~~~p~~~Av~~~---~~~------~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~l 3788 (4334)
T PRK05691 3718 LEQSYVRLFEAQVAAHPQRIAASCL---DQQ------WSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIV 3788 (4334)
T ss_pred cccCHHHHHHHHHHhCCCceEEEcC---CCc------ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4569999999999999999999876 543 9999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCC--ceEEEEECCCCCCCCCCCcCCCceEe
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPITTGVQIL 234 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (695)
||+++|+++|||++.++.+++.++++++++++++++.............+.. ...+++.++
T Consensus 3789 avlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 3851 (4334)
T PRK05691 3789 GSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE----------------- 3851 (4334)
T ss_pred HHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc-----------------
Confidence 9999999999999999999999999999999999998765443333222211 111222111
Q ss_pred eHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH
Q 005468 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (695)
..........+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|+++.+.+++|+.+...
T Consensus 3852 ----~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~ 3927 (4334)
T PRK05691 3852 ----VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQ 3927 (4334)
T ss_pred ----cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHH
Confidence 1111111112223457899999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcC
Q 005468 315 QVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (695)
Q Consensus 315 ~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (695)
.+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+......
T Consensus 3928 ~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~--------------------------- 3980 (4334)
T PRK05691 3928 FLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ--------------------------- 3980 (4334)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc---------------------------
Confidence 999999999999876 4788999999999999999999999887642100
Q ss_pred CCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC----CCCCCc
Q 005468 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD----NLSGHV 465 (695)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~----~~~~~v 465 (695)
..++||.+++||+++++++.+.|.+.+ +++++|.||+||++..++...... ....++
T Consensus 3981 ------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~i 4042 (4334)
T PRK05691 3981 ------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPI 4042 (4334)
T ss_pred ------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCC
Confidence 014899999999999999999998765 789999999999987665433221 234579
Q ss_pred CCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC-------CCCeeecccEEEEecCCcE
Q 005468 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-------EDGWFHTGDIGMWIPGGRL 538 (695)
Q Consensus 466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~-------~~gw~~TGDlg~~~~dG~l 538 (695)
|+|++++++.|+| +.+..++.|. .|||+|+|+++++||+++|+.|+++|. .++||+|||+|++++||.|
T Consensus 4043 G~p~~~~~~~v~d-~~~~~~p~g~---~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l 4118 (4334)
T PRK05691 4043 GSPTDNNRLYLLD-EALELVPLGA---VGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVL 4118 (4334)
T ss_pred CCccCCCEEEEEC-CCCCCCCCCC---ceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcE
Confidence 9999999999998 6677788887 899999999999999999999999994 3569999999999999999
Q ss_pred EEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEee--CCCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCC
Q 005468 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGD--SFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCND 616 (695)
Q Consensus 539 ~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~--~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (695)
+|+||+|++||+ +|++|++.|||+.|.++|+|.+|+|+.. ..++.++|+|++..... ..
T Consensus 4119 ~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~------------------~~ 4179 (4334)
T PRK05691 4119 EYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVL------------------AQ 4179 (4334)
T ss_pred EEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccc------------------cc
Confidence 999999999998 8999999999999999999999988753 23568999999875320 01
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHH
Q 005468 617 PRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQY 673 (695)
Q Consensus 617 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~ 673 (695)
....++|++.++ ++||.||+|..++.++++| +|++|||+|++|.+.
T Consensus 4180 ----~~~~~~l~~~l~-~~Lp~ymvP~~~~~~~~lP------~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4180 ----GALLERIKQRLR-AELPDYMVPLHWLWLDRLP------LNANGKLDRKALPAL 4225 (4334)
T ss_pred ----hHHHHHHHHHHH-hhCChhhcCcceeecccCC------CCCCCcccHhhcCCC
Confidence 122455666665 7899999999999999999 999999999999753
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-64 Score=657.72 Aligned_cols=491 Identities=22% Similarity=0.237 Sum_probs=408.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...+++++|.+.++++||++|+.+. + +.+||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++
T Consensus 510 ~~~~~~~~~~~~a~~~pd~~Al~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 580 (3956)
T PRK12467 510 APDCVHQLIEAQARQHPERPALVFG---E------QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLL 580 (3956)
T ss_pred CCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3468999999999999999999864 3 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|+++||+++.++.+++.++++++++++++++......+. ....+. ++.++...
T Consensus 581 ail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~-~~~~~~~~----------------- 638 (3956)
T PRK12467 581 AVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLP----VPAGLR-SLCLDEPA----------------- 638 (3956)
T ss_pred HHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhcc----cccCcc-EEEecccc-----------------
Confidence 99999999999999999999999999999999999875433221 111122 22222211
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (695)
+.... .....+.....++++++|+|||||||.||||+++|+++.+.+......+++.++|+++++.|++|.++....+
T Consensus 639 -~~~~~-~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 716 (3956)
T PRK12467 639 -DLLCG-YSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELF 716 (3956)
T ss_pred -ccccc-cCCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHHH
Confidence 00000 0111222345689999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 317 MTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 317 ~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+.+.....
T Consensus 717 ~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---------------------------- 768 (3956)
T PRK12467 717 GALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVA---------------------------- 768 (3956)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc----------------------------
Confidence 9999999999977 48899999999999999999999999886521100
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC----CCCCCcCC
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD----NLSGHVGS 467 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~----~~~~~vG~ 467 (695)
...++|.+++||+++++++.+.|.+.+ +++++|.||+||++..++...... ....++|+
T Consensus 769 ----------------~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 832 (3956)
T PRK12467 769 ----------------LPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQ 832 (3956)
T ss_pred ----------------cCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEecccccccCCCCcccC
Confidence 013679999999999999999999876 689999999999987666543322 12367999
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCC-------CCeeecccEEEEecCCcEEE
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-------DGWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~-------~gw~~TGDlg~~~~dG~l~i 540 (695)
|+++++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|++.|.. ++||+|||+|++++||.++|
T Consensus 833 p~~~~~~~i~d-~~~~~vp~G~---~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~ 908 (3956)
T PRK12467 833 PLANLGLYILD-HYLNPVPVGV---VGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEY 908 (3956)
T ss_pred CcCCCEEEEEC-CCCCCCCCCC---ceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEE
Confidence 99999999999 5667777776 8999999999999999999999999843 34999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC--CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+ .+..++|+|++..... ..
T Consensus 909 ~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~~~~-------~~------------- 967 (3956)
T PRK12467 909 LGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVAD-------GA------------- 967 (3956)
T ss_pred eccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEeccccc-------cc-------------
Confidence 9999999998 89999999999999999999999999854 2468999999764210 00
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 619 ARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
......++|+++++ ..||.|++|..|++++++| +|++|||+|++|.+.+..
T Consensus 968 ~~~~~~~~l~~~l~-~~Lp~y~vP~~~~~l~~lP------~t~~GKidR~~L~~~~~~ 1018 (3956)
T PRK12467 968 EHQATRDELKAQLR-QVLPDYMVPAHLLLLDSLP------LTPNGKLDRKALPKPDAS 1018 (3956)
T ss_pred ccccCHHHHHHHHH-hhCchhcCCceEeeecccC------CCCCCCcCHhhcCCcccc
Confidence 00122456667775 7899999999999999999 999999999999876543
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-63 Score=548.60 Aligned_cols=484 Identities=19% Similarity=0.182 Sum_probs=379.8
Q ss_pred HHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEE
Q 005468 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISV 166 (695)
Q Consensus 87 ~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~v 166 (695)
.+++++|+++|+.+. +.. +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|||+++|++++
T Consensus 5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~ 77 (501)
T PRK13390 5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT 77 (501)
T ss_pred hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 467789999999764 221 4699999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhccccC
Q 005468 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSN 246 (695)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (695)
|+++.++++++.+++.++++++++++............. ....+.+.... . ....+++.....
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~--~~~~~~~~~~~~--- 140 (501)
T PRK13390 78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGAD---LPLRLSFGGEI---------D--GFGSFEAALAGA--- 140 (501)
T ss_pred ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhc---cceEEEecCcc---------c--ccccHHHHhccc---
Confidence 999999999999999999999999986543322221111 11122222110 0 112233332211
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCceEEe--chHHHHHHHH----hhccccccCCCcEEEEeCChhhHHHHHHHHHHHH
Q 005468 247 LQPFSPPKPDDVATICYTSGTTGTPKGAVL--SHGNLIASVA----GATLGTKFYPSDVYISYLPLAHIYERANQVMTVY 320 (695)
Q Consensus 247 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~--th~~l~~~~~----~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~ 320 (695)
.+ .....+++++|+|||||||.||||++ +|.++..... .....+.+..+|++++.+|++|.+++......+.
T Consensus 141 -~~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~ 218 (501)
T PRK13390 141 -GP-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHA 218 (501)
T ss_pred -CC-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHh
Confidence 01 11122357999999999999999995 5555543211 1122356788999999999999999876556677
Q ss_pred cCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 005468 321 SGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399 (695)
Q Consensus 321 ~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~ 399 (695)
.|+++++.+ +++..+++.|+++++|++.++|+++..+........
T Consensus 219 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------- 264 (501)
T PRK13390 219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR---------------------------------- 264 (501)
T ss_pred cCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc----------------------------------
Confidence 899998876 689999999999999999999999988864210000
Q ss_pred HHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCccCcEEEEee
Q 005468 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVD 478 (695)
Q Consensus 400 l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d 478 (695)
+.....++|.+++||+++++++.+.+.+.+|.++++.||+||+++++...... ....+++|+|+++ +++|+|
T Consensus 265 ------~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d 337 (501)
T PRK13390 265 ------TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD 337 (501)
T ss_pred ------ccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEEC
Confidence 00001478999999999999999999998899999999999998655433222 2456789999999 799998
Q ss_pred cCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCC--CCeeecccEEEEecCCcEEEEecCCCeeecCCeeee
Q 005468 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE--DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (695)
Q Consensus 479 ~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~--~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v 556 (695)
+++..++.|+ .|||+|+|++++.||+++|+.|.+.|.. +||++|||+|++|+||++++.||.||+||+ +|++|
T Consensus 338 -~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~-~G~~v 412 (501)
T PRK13390 338 -DDGNELPAGR---IGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIIS-GGVNI 412 (501)
T ss_pred -CCCCCCCCCC---ceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeE-CCeee
Confidence 5667777776 8999999999999999999999988743 689999999999999999999999999996 89999
Q ss_pred chHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHh
Q 005468 557 AAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGRE 633 (695)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 633 (695)
+|.+||+++.+||.|.+++|++.++ ++.++++|++.++. . .. +...++|.++++
T Consensus 413 ~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~----------~--------~~----~~~~~~l~~~~~- 469 (501)
T PRK13390 413 YPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGI----------R--------GS----DELARELIDYTR- 469 (501)
T ss_pred CHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCC----------C--------cc----hhhHHHHHHHHH-
Confidence 9999999999999999999999754 46788888876521 0 00 112456666775
Q ss_pred cCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHH
Q 005468 634 AQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAK 671 (695)
Q Consensus 634 ~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~ 671 (695)
.+|+.|++|..+++++++| +|++||++|++|+
T Consensus 470 ~~l~~~~~P~~~~~~~~iP------~t~~GKi~r~~L~ 501 (501)
T PRK13390 470 SRIAHYKAPRSVEFVDELP------RTPTGKLVKGLLR 501 (501)
T ss_pred HhcccCCCCcEEEEeccCC------CCCccceehhhcC
Confidence 6799999999999999999 9999999999874
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=546.84 Aligned_cols=476 Identities=20% Similarity=0.219 Sum_probs=384.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...++.+.|.+.++++||++|+.+. + +.+||+||.+++.++|++|.+.|+++||+|+|+++|++++++++|
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 103 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4568999999999999999999753 2 249999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|++++|+++.++.+++.+++++++++.+++++.....+..... .++.++...
T Consensus 104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~~----------------- 160 (516)
T PRK13383 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD------AVAVIDPAT----------------- 160 (516)
T ss_pred HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc------ceEEeccch-----------------
Confidence 999999999999999999999999999999999998876655443211 122222110
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHH--HHHhhccccccCCCcEEEEeCChhhHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (695)
..... ....+...++.++|+|||||||.||||+++|..... ........+++.++|++++.+|++|.+++..
T Consensus 161 ~~~~~------~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~ 234 (516)
T PRK13383 161 AGAEE------SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGM 234 (516)
T ss_pred hhhhc------CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHH
Confidence 00000 001122345678999999999999999999984321 1122223456788999999999999999988
Q ss_pred HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
.+.++..|+++++.. +++..+++.++++++|.+.++|+++..+.+...... .
T Consensus 235 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------~---- 287 (516)
T PRK13383 235 LMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR-----------------------A---- 287 (516)
T ss_pred HHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc-----------------------c----
Confidence 888899999998766 789999999999999999999999988765211000 0
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCccCc
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAAC 472 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ 472 (695)
....+++|.+++||+++++++.+.|.+.+|+.+++.||+||++..+...... ....+++|.|++++
T Consensus 288 -------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~ 354 (516)
T PRK13383 288 -------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGC 354 (516)
T ss_pred -------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCc
Confidence 0001489999999999999999999999999999999999998655443322 24567899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCC
Q 005468 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (695)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~ 552 (695)
+++|+| +++..++.|+ .|||+++|+.++.||++++. +.+ .+|||+|||+|++|++|+++++||.||+||+ +
T Consensus 355 ~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~~Y~~~~~---~~~-~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~-~ 425 (516)
T PRK13383 355 PVRILD-RNNRPVGPRV---TGRIFVGGELAGTRYTDGGG---KAV-VDGMTSTGDMGYLDNAGRLFIVGREDDMIIS-G 425 (516)
T ss_pred EEEEEC-CCCCCCCCCC---ceEEEEecCcccccccCCch---hhe-ecCceecceeEEEcCCccEEEeccccceEEE-C
Confidence 999999 5556666665 89999999999999998764 223 5899999999999999999999999999997 8
Q ss_pred eeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
|++|+|.+||++|.+||.|.+++|++.++ ++.++++|++++.. ... .++|++
T Consensus 426 G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~--------~~~-----------------~~~l~~ 480 (516)
T PRK13383 426 GENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGS--------GVD-----------------AAQLRD 480 (516)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCC--------CCC-----------------HHHHHH
Confidence 99999999999999999999999999543 46788899887531 010 234555
Q ss_pred HHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHH
Q 005468 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAK 671 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~ 671 (695)
+++ ++++.|++|..|++++++| +|++||++|++|+
T Consensus 481 ~~~-~~l~~~~~p~~i~~v~~iP------~t~~gKi~r~~L~ 515 (516)
T PRK13383 481 YLK-DRVSRFEQPRDINIVSSIP------RNPTGKVLRKELP 515 (516)
T ss_pred HHH-HhcccCCCCcEEEEeCCCC------CCCCCcCcHHHhC
Confidence 665 6789999999999999999 9999999999874
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=542.09 Aligned_cols=453 Identities=24% Similarity=0.301 Sum_probs=374.7
Q ss_pred HHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEec
Q 005468 89 VDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168 (695)
Q Consensus 89 a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl 168 (695)
+.+.++++|+.+. + +++||+||.++++++|..|+ ++|+|+++++|+++|+++++||+++|++++|+
T Consensus 10 ~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l 75 (471)
T PRK07787 10 AAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV 75 (471)
T ss_pred hcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence 4567888888753 2 46999999999999999996 47999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCC
Q 005468 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248 (695)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (695)
++.++.+++.+++++++++.++++.... ...++.+.. .... ..+ .
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~~~--~~~~----------------~~~-----------~ 120 (471)
T PRK07787 76 PPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHVPV--RLHA----------------RSW-----------H 120 (471)
T ss_pred CCCCChHHHHHHHHhcCCCEEEecCCcc------cccccceee--eccc----------------ccc-----------c
Confidence 9999999999999999999999976311 001111110 0000 000 0
Q ss_pred CCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-HHHHHHcCcEEeE
Q 005468 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGF 327 (695)
Q Consensus 249 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~ 327 (695)
......++|+++++|||||||.||||+++|+++...+......+.+.++|++++.+|++|.+++.. .+.+++.|+++++
T Consensus 121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~ 200 (471)
T PRK07787 121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVH 200 (471)
T ss_pred cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEe
Confidence 111245789999999999999999999999999998887777778889999999999999999887 5668999999988
Q ss_pred ec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 005468 328 YQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406 (695)
Q Consensus 328 ~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~ 406 (695)
.+ .++..+++.|+ +++|++.++|+++..+.+....
T Consensus 201 ~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~------------------------------------------- 236 (471)
T PRK07787 201 TGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA------------------------------------------- 236 (471)
T ss_pred cCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-------------------------------------------
Confidence 76 78999999999 9999999999999887652000
Q ss_pred hhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCC
Q 005468 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTS 486 (695)
Q Consensus 407 ~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~ 486 (695)
.....++|.+++||+++++++.++|.+.++.++++.||+||++..++........++++|.|+++++++|+|.+ +..++
T Consensus 237 ~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~-~~~~~ 315 (471)
T PRK07787 237 ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDED-GGPVP 315 (471)
T ss_pred cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCCcccCCcccccCCCcEEEEECCC-CCCCC
Confidence 00014899999999999999999999989999999999999986555443334556789999999999999944 44444
Q ss_pred -CCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecC-CCeeecCCeeeechHHHHHH
Q 005468 487 -EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK-KNIFKLAQGEYIAAEKIENV 564 (695)
Q Consensus 487 -~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~-~d~ikl~~G~~v~p~~IE~~ 564 (695)
.++ ..|||+++|++++.||+++++.|.+.|..+|||+|||+|++++||+++++||+ ||++|. +|++|+|.+||++
T Consensus 316 ~~~~--~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~ 392 (471)
T PRK07787 316 HDGE--TVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRIGAGEIETA 392 (471)
T ss_pred CCCC--CceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEECHHHHHHH
Confidence 222 27999999999999999999999999988999999999999999999999996 899995 8999999999999
Q ss_pred HhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcce
Q 005468 565 YAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEF 641 (695)
Q Consensus 565 l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~ 641 (695)
+.++|.|.+++|++.++ ++.++++|++... .+ .++|.++++ +.|+.|++
T Consensus 393 l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~----------~~-----------------~~~l~~~l~-~~l~~~~~ 444 (471)
T PRK07787 393 LLGHPGVREAAVVGVPDDDLGQRIVAYVVGADD----------VA-----------------ADELIDFVA-QQLSVHKR 444 (471)
T ss_pred HHhCCCcceEEEEcccccccCeEEEEEEEeCCC----------CC-----------------HHHHHHHHH-hhcccccC
Confidence 99999999999999764 4678899887431 11 334555554 67999999
Q ss_pred eeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 642 VKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 642 p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
|..|++++++| +|++||++|++|++
T Consensus 445 P~~i~~~~~iP------~~~~GKi~r~~L~~ 469 (471)
T PRK07787 445 PREVRFVDALP------RNAMGKVLKKQLLS 469 (471)
T ss_pred CcEEEEeccCC------CCCCccccHHHhcc
Confidence 99999999999 99999999999975
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=596.57 Aligned_cols=497 Identities=23% Similarity=0.233 Sum_probs=392.6
Q ss_pred CCCCCHHHHHHHHHHhcCC-CccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
+...++.+.|.+.++++|+ +.++.+. ++ +.+||+||+++++++|++|++ |+++||+|+|+++|+++|+++
T Consensus 628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~ 698 (1140)
T PRK06814 628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT 698 (1140)
T ss_pred cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence 3457889999999999875 5665431 11 459999999999999999975 999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHH--HhcccCCCCceEEEEECCCCCCCCCCCcCCCce
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL--LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~--~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
++||+++|++++|+++.++.+++.+++++++++++|++.+..+.. .......+....++.+++...... .
T Consensus 699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~ 770 (1140)
T PRK06814 699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIG--------L 770 (1140)
T ss_pred HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCC--------h
Confidence 999999999999999999999999999999999999987644321 111111222234444443211000 0
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHH
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (695)
...+.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++
T Consensus 771 ~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 849 (1140)
T PRK06814 771 ADKIKGLLAGRFP-LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGL 849 (1140)
T ss_pred HHHHHHHhhccCC-ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHH
Confidence 0001111111111 011113568999999999999999999999999999988877777888999999999999999998
Q ss_pred HH-HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Q 005468 313 AN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (695)
Q Consensus 313 ~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (695)
.. .+.++..|+++++.+ .+...+.+.++++++|++.++|++++.+.+...
T Consensus 850 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--------------------------- 902 (1140)
T PRK06814 850 TGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH--------------------------- 902 (1140)
T ss_pred HHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc---------------------------
Confidence 55 667899999999876 466778899999999999999999987754200
Q ss_pred CCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCc
Q 005468 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (695)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (695)
....+++|.+++||+++++++.+.+.+.+|+++++.||+||++..++...+.....+++|+|+
T Consensus 903 -----------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 965 (1140)
T PRK06814 903 -----------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLL 965 (1140)
T ss_pred -----------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccC
Confidence 000148999999999999999999999999999999999999877665555456678999999
Q ss_pred cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeee
Q 005468 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (695)
Q Consensus 470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (695)
|++++++++.++ .+ +.|||+++|++++.|||++++.+......+|||+|||+|++|+||++++.||.||+||
T Consensus 966 ~g~~~~~~~~~~-----~~---~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~ 1037 (1140)
T PRK06814 966 PGIEYRLEPVPG-----ID---EGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAK 1037 (1140)
T ss_pred CCCeEEEeecCC-----CC---CceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeee
Confidence 999999987432 13 3799999999999999998654322223689999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005468 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLAD 626 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 626 (695)
+ +|++|+|.|||+++.+|+.|.+++|++.++ ++.+++++...+ .+ .++
T Consensus 1038 ~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~-----------~~-----------------~~~ 1088 (1140)
T PRK06814 1038 I-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASD-----------AT-----------------RAA 1088 (1140)
T ss_pred e-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCC-----------cC-----------------HHH
Confidence 7 899999999999999999999999998654 345665544221 00 345
Q ss_pred HHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 627 MDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 627 l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
+.+++++.+++.|++|..|++++++| +|++||++|++|++.+++.
T Consensus 1089 l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 1133 (1140)
T PRK06814 1089 FLAHAKAAGASELMVPAEIITIDEIP------LLGTGKIDYVAVTKLAEEA 1133 (1140)
T ss_pred HHHHHHHcCCCcccCCcEEEEecCcC------CCCCCCCcHHHHHHHHHHh
Confidence 56666656799999999999999999 9999999999999877664
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-62 Score=542.61 Aligned_cols=484 Identities=18% Similarity=0.193 Sum_probs=398.2
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
++++.++|.+.++.+|+++++... + +.+||+||.+++.++|.+|.+.|+++|++|+++++|+.+|+++++|
T Consensus 1 ~~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a 71 (503)
T PRK04813 1 IMDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLG 71 (503)
T ss_pred CchHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 357899999999999999998753 2 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++.+++.++++.+++++++++...... ... ...+.++
T Consensus 72 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----------------------~~~~~~~ 122 (503)
T PRK04813 72 AVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE-------ILG----------------------IPVITLD 122 (503)
T ss_pred HHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc-------ccC----------------------CcEEehH
Confidence 99999999999999999999999999999999998654100 000 0112222
Q ss_pred HHHhcc--ccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 238 NLLSQG--RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 238 ~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
++.... ...........++++++++|||||||.||+|.++|+++...+......+.+..+++++..+|++|.+++...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 202 (503)
T PRK04813 123 ELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDL 202 (503)
T ss_pred HhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHH
Confidence 222211 011111233467899999999999999999999999999888877777888899999999999999998888
Q ss_pred HHHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCC
Q 005468 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (695)
Q Consensus 316 ~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (695)
+.++..|+++++++ .++..+++.++++++|++.++|+++..+......
T Consensus 203 ~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~---------------------------- 254 (503)
T PRK04813 203 YPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSF---------------------------- 254 (503)
T ss_pred HHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc----------------------------
Confidence 88999999998877 4788999999999999999999999765432100
Q ss_pred CCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-----CCCCCCc
Q 005468 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSGHV 465 (695)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~v 465 (695)
.+...+++|.++++|+++++.+.+++.+.+ ++.+++.||+||++..++..... .....++
T Consensus 255 --------------~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~ 320 (503)
T PRK04813 255 --------------NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPI 320 (503)
T ss_pred --------------CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcc
Confidence 001115899999999999999999999988 78899999999997654432111 1345679
Q ss_pred CCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC---CCCeeecccEEEEecCCcEEEEe
Q 005468 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID---EDGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~---~~gw~~TGDlg~~~~dG~l~i~G 542 (695)
|.|.++++++|+| +++..++.|. .|||+++|++++.|||++++.|.+.|. ..+||+|||+|++ ++|++++.|
T Consensus 321 g~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~G 395 (503)
T PRK04813 321 GYAKPDSPLLIID-EEGTKLPDGE---QGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQG 395 (503)
T ss_pred cccCCCCEEEEEC-CCCCCCCCCC---ceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEec
Confidence 9999999999999 5566666665 899999999999999999999998872 3359999999999 999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRA 619 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (695)
|.||+||+ +|++|+|.+||+++.++|+|.+++|++... .+.++++|++.++... .
T Consensus 396 R~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----------------~---- 453 (503)
T PRK04813 396 RIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE-----------------R---- 453 (503)
T ss_pred cccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccc-----------------c----
Confidence 99999997 899999999999999999999999998543 3678899988763110 0
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 620 RAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 620 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
...+.++++++++ .+|+.|++|+.|++++++| +|++||++|++|++.+.
T Consensus 454 ~~~~~~~l~~~~~-~~l~~~~~P~~i~~~~~~P------~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 454 EFELTKAIKKELK-ERLMEYMIPRKFIYRDSLP------LTPNGKIDRKALIEEVN 502 (503)
T ss_pred cchhHHHHHHHHH-hhCccccCCeEEEEeccCC------CCCCCCCcHHHHHHHhc
Confidence 1123456666665 6799999999999999999 99999999999998875
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-62 Score=540.92 Aligned_cols=495 Identities=20% Similarity=0.204 Sum_probs=397.3
Q ss_pred HHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeE
Q 005468 86 VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFIS 165 (695)
Q Consensus 86 ~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~ 165 (695)
...++++||++|+.+. ++. +.+||.||.+++.++|++|.+.|+++|++|+++++|+++|+++++||+++|+++
T Consensus 4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~ 76 (511)
T PRK13391 4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76 (511)
T ss_pred hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence 4578889999999764 222 459999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcccc
Q 005468 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRS 245 (695)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (695)
+|+++.++.+++.++++.++++.++++......+.+....++.....+.++..... .....+.+.....
T Consensus 77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-- 145 (511)
T PRK13391 77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL---------EGFVGYAEAVAGL-- 145 (511)
T ss_pred eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC---------cccccHHHHhcCC--
Confidence 99999999999999999999999999988776665554445555555555432110 0122344433211
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCceEEe--chHHHHHHH---HhhccccccCCCcEEEEeCChhhHHHHHHHHHHHH
Q 005468 246 NLQPFSPPKPDDVATICYTSGTTGTPKGAVL--SHGNLIASV---AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVY 320 (695)
Q Consensus 246 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~--th~~l~~~~---~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~ 320 (695)
+ .....+.++.++++|||||||.||||++ +|.++.... ......+.+.+++++++.+|++|.+++...+.++.
T Consensus 146 -~-~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~ 223 (511)
T PRK13391 146 -P-ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIR 223 (511)
T ss_pred -C-CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 1 1111234567899999999999999995 466654322 22334466778999999999999999888888899
Q ss_pred cCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 005468 321 SGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399 (695)
Q Consensus 321 ~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~ 399 (695)
.|+++++.+ +++..+++.++++++|++.++|+++..+.+......
T Consensus 224 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------------- 269 (511)
T PRK13391 224 LGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR---------------------------------- 269 (511)
T ss_pred cCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------------
Confidence 999999887 799999999999999999999999987764210000
Q ss_pred HHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCccCcEEEEee
Q 005468 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVD 478 (695)
Q Consensus 400 l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d 478 (695)
.....+++|.+++||+++++++.+++++.+|..+++.||+||++.++...... ....+++|.|+++ +++++|
T Consensus 270 ------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d 342 (511)
T PRK13391 270 ------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILD 342 (511)
T ss_pred ------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEEC
Confidence 00011589999999999999999999998899999999999998765443222 2456799999999 689998
Q ss_pred cCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCC-CeeecccEEEEecCCcEEEEecCCCeeecCCeeeec
Q 005468 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557 (695)
Q Consensus 479 ~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~-gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~ 557 (695)
+++...+.|. .|||+++|+ ++.|||++++.+.+.+..+ |||+|||+|+++++|.+++.||.||+||+ +|++|+
T Consensus 343 -~~~~~~~~g~---~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~-~G~~v~ 416 (511)
T PRK13391 343 -DDGAELPPGE---PGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIIS-GGVNIY 416 (511)
T ss_pred -CCCCCCCCCC---ceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEe-CCEEEC
Confidence 5566666665 899999999 8899999999999988655 99999999999999999999999999996 899999
Q ss_pred hHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhc
Q 005468 558 AEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREA 634 (695)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 634 (695)
|.+||+++.+||.|.+|+|++.++ ++.+++++++.++. . .+ +.+.++|+++++ .
T Consensus 417 ~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~----------~--------~~----~~~~~~l~~~~~-~ 473 (511)
T PRK13391 417 PQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGV----------D--------PG----PALAAELIAFCR-Q 473 (511)
T ss_pred HHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCC----------C--------cc----cchHHHHHHHHH-h
Confidence 999999999999999999998653 35688888876521 0 01 123456777776 7
Q ss_pred CCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 635 QLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 635 ~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
+|+.|++|..|.+++++| +|++||++|+.|++.|..
T Consensus 474 ~l~~~~~P~~i~~~~~~P------~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 474 RLSRQKCPRSIDFEDELP------RLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred hcccCcCCcEEEEeecCC------CCCccceeHHHHHHHhhc
Confidence 899999999999999999 999999999999998864
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-62 Score=549.58 Aligned_cols=497 Identities=22% Similarity=0.321 Sum_probs=383.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
.+++.++.++|..+++++|+..++. .....++.+||.||++++.++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~ 90 (579)
T PRK09192 17 YADFPTLVEALDYAALGEAGMNFYD------RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEA 90 (579)
T ss_pred ccchhhHHHHHHHhhccCCceEEEe------cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHH
Confidence 3567899999999999998766542 1222357799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCC-------HHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCc
Q 005468 155 DHACSAYSFISVPLYDTLG-------PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~-------~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 227 (695)
++||+++|++++|+++.++ .+++.++++.++++++|++....+.+.+...... .++
T Consensus 91 ~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~---~~~-------------- 153 (579)
T PRK09192 91 FFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP---LLH-------------- 153 (579)
T ss_pred HHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc---ccc--------------
Confidence 9999999999999986543 6899999999999999999876665554321111 111
Q ss_pred CCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc-ccccCCCcEEEEeCCh
Q 005468 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPL 306 (695)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~d~~l~~~pl 306 (695)
..++.++...... ........++++++|+|||||||.||||+++|++++..+..... .+++.++|++++++|+
T Consensus 154 -----~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (579)
T PRK09192 154 -----VLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPF 227 (579)
T ss_pred -----eeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCC
Confidence 1223333222111 11222346789999999999999999999999999998877776 6888999999999999
Q ss_pred hhHHHHHHH-HHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 005468 307 AHIYERANQ-VMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (695)
Q Consensus 307 ~h~~~~~~~-~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (695)
+|.+++... +.++..|+++++.. .++..+++.+.++++|+++..|..+..+........
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~--------------- 292 (579)
T PRK09192 228 YHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKD--------------- 292 (579)
T ss_pred CCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhcccc---------------
Confidence 999998864 45788899887765 268889999999999987775554544332110000
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------Cccccccccccccccccc
Q 005468 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQ 454 (695)
Q Consensus 381 ~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~~ 454 (695)
.+....+++|.+++||+++++++.+.+.+.++ ..+++.||+||+++.++.
T Consensus 293 ------------------------~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~ 348 (579)
T PRK09192 293 ------------------------LAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSF 348 (579)
T ss_pred ------------------------ccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEec
Confidence 00000148999999999999999999988763 248999999999866554
Q ss_pred cCCCC----------------------------CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchh
Q 005468 455 LDEGD----------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG 506 (695)
Q Consensus 455 ~~~~~----------------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~g 506 (695)
..... ...+++|.|+|+++++|+| +++..++.++ .|||+++|++++.|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~---~Gel~i~g~~~~~g 424 (579)
T PRK09192 349 SPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERV---VGHICVRGPSLMSG 424 (579)
T ss_pred cCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCC---EEEEEecCCchhhh
Confidence 32211 0125799999999999999 5556666665 89999999999999
Q ss_pred ccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcc--eEEEEeeCC--C
Q 005468 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVG--QCFVYGDSF--N 582 (695)
Q Consensus 507 Y~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~--~~~V~g~~~--~ 582 (695)
||++ +.+.+.+..+|||+|||+|++ ++|+++|+||+||+||+ +|++|+|.+||++|.+||+|. +|+|++.++ +
T Consensus 425 Y~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~ 501 (579)
T PRK09192 425 YFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENG 501 (579)
T ss_pred hcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCC
Confidence 9999 677788888999999999999 99999999999999997 899999999999999999998 899988653 3
Q ss_pred CeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEee--cCCCCCCCccC
Q 005468 583 SALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVL--EPFTVENGLLT 660 (695)
Q Consensus 583 ~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~--~~p~~~~~~~t 660 (695)
..++++|++.+.. ....+.+.+.+++.+. ..+++|..+.+++ ++| +|
T Consensus 502 ~~~~~~v~~~~~~---------------------~~~~~~l~~~~~~~l~----~~~~~~~~i~~~~~~~lP------~t 550 (579)
T PRK09192 502 EKIVLLVQCRISD---------------------EERRGQLIHALAALVR----SEFGVEAAVELVPPHSLP------RT 550 (579)
T ss_pred eeEEEEEEecCCC---------------------hHHHHHHHHHHHHHHH----HHhCCCceEEEeCCCCcC------CC
Confidence 4677787765421 0111223333333321 2466777777775 788 99
Q ss_pred ccccCChHHHHHHHHHH
Q 005468 661 PTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 661 ~~gKi~R~~l~~~~~~~ 677 (695)
++||++|++|++.|.+.
T Consensus 551 ~~GKv~R~~l~~~~~~~ 567 (579)
T PRK09192 551 SSGKLSRAKAKKRYLSG 567 (579)
T ss_pred CCcchhHHHHHHHHHcC
Confidence 99999999999998874
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=544.05 Aligned_cols=510 Identities=24% Similarity=0.302 Sum_probs=399.2
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..++.++|..+++++|+++|+... + +++||.||.+++.++|.+|.+ .|+++|++|+|+++|+++|+++++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 92 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF 92 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 568999999999999999999753 2 359999999999999999985 899999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCC--CCC----------
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQ--IPS---------- 224 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~--~~~---------- 224 (695)
||+++|++++|+++.++.+++.++++.++++.++++......+.+.... ...+.++........ ...
T Consensus 93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (560)
T PRK08974 93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK-TPVKHVILTRMGDQLSTAKGTLVNFVVKYI 171 (560)
T ss_pred HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh-cCcceEEEecccccccccccccccchhhhc
Confidence 9999999999999999999999999999999999987655544443222 123333322111000 000
Q ss_pred --C-CcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcccc---ccCCCc
Q 005468 225 --L-PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT---KFYPSD 298 (695)
Q Consensus 225 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d 298 (695)
. .........++.+....+...........++++++|+|||||||.||||.++|+++..++......+ ....++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~ 251 (560)
T PRK08974 172 KRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKE 251 (560)
T ss_pred ccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCcc
Confidence 0 0000001123333333222211112234678999999999999999999999999987765433222 234567
Q ss_pred EEEEeCChhhHHHHHH-HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHH
Q 005468 299 VYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (695)
Q Consensus 299 ~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 375 (695)
.++..+|++|.+++.. .+.++..|+++++.. .++..+++.++++++|.+.++|+++..+......
T Consensus 252 ~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------ 319 (560)
T PRK08974 252 LVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF------------ 319 (560)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc------------
Confidence 8889999999999766 455788888877654 5788899999999999999999999988652100
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccccccc
Q 005468 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455 (695)
Q Consensus 376 ~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~ 455 (695)
.....+++|.+++||+++++.+.+.|++.+|+++++.||+||++..++..
T Consensus 320 ------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~ 369 (560)
T PRK08974 320 ------------------------------QELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVN 369 (560)
T ss_pred ------------------------------ccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeecc
Confidence 00011489999999999999999999998899999999999998766554
Q ss_pred CCCC-CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEec
Q 005468 456 DEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534 (695)
Q Consensus 456 ~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~ 534 (695)
.... ...+++|.|+|+++++|+| +++..++.|+ .|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++
T Consensus 370 ~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~ 444 (560)
T PRK08974 370 PYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGE---PGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDE 444 (560)
T ss_pred CCCCcccCCccccCcCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcC
Confidence 3322 4467899999999999999 4566677776 89999999999999999999999988 789999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHH
Q 005468 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLE 611 (695)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~ 611 (695)
+|.++++||.+|+|++ +|++|+|.+||+++.++|+|.+++|++.++ ++.++++|+..+.. ..
T Consensus 445 ~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~---------~~----- 509 (560)
T PRK08974 445 EGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPS---------LT----- 509 (560)
T ss_pred CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCC---------CC-----
Confidence 9999999999999997 799999999999999999999999998654 34566666544311 11
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHH
Q 005468 612 QLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAI 678 (695)
Q Consensus 612 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i 678 (695)
.++++++++ ..|+.|++|..+++++++| +|++||++|+.|++...+..
T Consensus 510 ------------~~~l~~~l~-~~l~~~~~P~~~~~~~~lP------~t~~GK~~r~~l~~~~~~~~ 557 (560)
T PRK08974 510 ------------EEELITHCR-RHLTGYKVPKLVEFRDELP------KSNVGKILRRELRDEARAKV 557 (560)
T ss_pred ------------HHHHHHHHH-hhcccccCCcEEEEhhhCC------CCCCCcEeHHHHHHHHHhhh
Confidence 234555554 6789999999999999999 99999999999998877654
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-62 Score=534.66 Aligned_cols=448 Identities=24% Similarity=0.295 Sum_probs=373.4
Q ss_pred CHHHHH-HHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 80 TTHDNF-VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 80 tl~~~l-~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
++.+.+ ...++++|+++|+... + +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~ 73 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRLN---D------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLAL 73 (458)
T ss_pred hhhcChHHHHHHhCCCceeeecC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHH
Confidence 444444 4558899999999743 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (695)
+++|++++|+++.++.+++.+++++++++.++++.+... +. .+... .+..
T Consensus 74 ~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-------~~~~~----------------------~~~~ 123 (458)
T PRK09029 74 LQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FS-------ALTSL----------------------HLQL 123 (458)
T ss_pred HHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hh-------hcccc----------------------cccc
Confidence 999999999999999999999999999999998765422 10 00000 0000
Q ss_pred HHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHH
Q 005468 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (695)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 318 (695)
..........++++++++|||||||.||||++||++++..+......+++.++|+++..+|++|.+++...+.+
T Consensus 124 ------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~ 197 (458)
T PRK09029 124 ------VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRW 197 (458)
T ss_pred ------ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHH
Confidence 00011223467899999999999999999999999999998888777888999999999999999998877778
Q ss_pred HHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhH
Q 005468 319 VYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWD 398 (695)
Q Consensus 319 l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d 398 (695)
+..|+++++.+. ..+++.+ .++|.+..+|+++..+......
T Consensus 198 l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----------------------------------- 238 (458)
T PRK09029 198 LYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----------------------------------- 238 (458)
T ss_pred HhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc-----------------------------------
Confidence 999999998653 5567776 4899999999999887652100
Q ss_pred HHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEee
Q 005468 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478 (695)
Q Consensus 399 ~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d 478 (695)
..++|.+++||+++++.+.+++... |+++++.||+||++...+.... ....++|.|+++++++|++
T Consensus 239 -----------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~--~~~~~~G~~~~~~~~~i~~ 304 (458)
T PRK09029 239 -----------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRA--DGLAGVGSPLPGREVKLVD 304 (458)
T ss_pred -----------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCC--CCCCCCCCCCCCCEEEEeC
Confidence 1379999999999999999998864 9999999999999865543322 2235699999999999986
Q ss_pred cCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeech
Q 005468 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558 (695)
Q Consensus 479 ~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p 558 (695)
|||+|+|+.++.||+++++.+.... .+|||+|||+|++| ||+++|.||+||+||+ +|++|+|
T Consensus 305 ---------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~-~G~~v~p 366 (458)
T PRK09029 305 ---------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFS-GGEGIQP 366 (458)
T ss_pred ---------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEecccccceee-CCEEeCH
Confidence 8999999999999999998886554 68999999999999 9999999999999996 8999999
Q ss_pred HHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcC
Q 005468 559 EKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQ 635 (695)
Q Consensus 559 ~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 635 (695)
.+||+++.+||+|.+|+|++.++ ++.++|+|+++... ..++|+++++ .+
T Consensus 367 ~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~---------------------------~~~~l~~~~~-~~ 418 (458)
T PRK09029 367 EEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA---------------------------AVVNLAEWLQ-DK 418 (458)
T ss_pred HHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc---------------------------CHHHHHHHHH-hh
Confidence 99999999999999999999764 36788988876311 1456677776 78
Q ss_pred CCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 636 LRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 636 l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
|+.|++|..+.+++++| +|.+||++|+.|++++++.
T Consensus 419 l~~~~~P~~~~~~~~~p------~t~~gKi~r~~L~~~~~~~ 454 (458)
T PRK09029 419 LARFQQPVAYYLLPPEL------KNGGIKISRQALKEWVAQQ 454 (458)
T ss_pred chhccCCeEEEEecccc------cCcCCCcCHHHHHHHHHhc
Confidence 99999999999999999 9999999999999888754
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-61 Score=536.95 Aligned_cols=501 Identities=22% Similarity=0.239 Sum_probs=400.1
Q ss_pred CHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHH
Q 005468 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (695)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (695)
|+.++|.+.++++||++|+.+. . +.+||.||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+
T Consensus 4 ~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~ 74 (533)
T PRK07798 4 NIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF 74 (533)
T ss_pred cHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 7899999999999999999763 2 469999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHH
Q 005468 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (695)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (695)
++|++++|+++.++.+++.++++++++++++++......+.+.....+.++.++.+++...... ....++++++
T Consensus 75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 148 (533)
T PRK07798 75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDL------LPGAVDYEDA 148 (533)
T ss_pred hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCccccc------CCccccHHHH
Confidence 9999999999999999999999999999999998877777666556666777777765332110 0123567777
Q ss_pred HhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc---------ccc------CCCcEEEEeC
Q 005468 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---------TKF------YPSDVYISYL 304 (695)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---------~~~------~~~d~~l~~~ 304 (695)
+...... .... ....+.++|+|||||||.||+|+++|+++.......... ..+ ..+++++..+
T Consensus 149 ~~~~~~~-~~~~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (533)
T PRK07798 149 LAAGSPE-RDFG-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAP 226 (533)
T ss_pred HhccCCc-CCCC-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEec
Confidence 6543321 1111 223455799999999999999999999987654432211 111 5678999999
Q ss_pred ChhhHHHHHHHHHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHH-HHHHHHHhcccchHHHHHHHHH
Q 005468 305 PLAHIYERANQVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIY-AGITSAVRTSGGLRERLFNAAY 380 (695)
Q Consensus 305 pl~h~~~~~~~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~-~~~~~~~~~~~~~~~~~~~~a~ 380 (695)
|++|.+++...+.+++.|+++++.+ .++..+++.++++++|++.++|..+...+ ..+. .
T Consensus 227 pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~---------------- 289 (533)
T PRK07798 227 PLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A---------------- 289 (533)
T ss_pred chhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c----------------
Confidence 9999999998888999999999987 58999999999999999999998775432 2111 0
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC
Q 005468 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD 459 (695)
Q Consensus 381 ~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~ 459 (695)
......+++|.+++||+++++++.+++.+.+ ++.+++.||+||++..........
T Consensus 290 ------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~ 345 (533)
T PRK07798 290 ------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG 345 (533)
T ss_pred ------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCC
Confidence 0001125899999999999999999999988 789999999999965544332211
Q ss_pred CCCCCcC--CCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCC---CCeeecccEEEEec
Q 005468 460 NLSGHVG--SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE---DGWFHTGDIGMWIP 534 (695)
Q Consensus 460 ~~~~~vG--~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~---~gw~~TGDlg~~~~ 534 (695)
....| .+.++..++|+| +++..++.|.++ .|+|+ +++.++.|||++++.|.+.|.. ++||+|||+|++|+
T Consensus 346 --~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~-~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~ 420 (533)
T PRK07798 346 --AVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGE-IGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEA 420 (533)
T ss_pred --CccCCCCccCCCceEEEEC-CCCCCCCCCCCC-eeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcC
Confidence 12334 788999999999 455566666511 26665 5668999999999999988842 46999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHH
Q 005468 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLE 611 (695)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~ 611 (695)
+|++++.||.||+||. +|++|+|++||+++.++|.|.+++|++.++ ++.++++|++.++. ..
T Consensus 421 ~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~------ 485 (533)
T PRK07798 421 DGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGA--------RP------ 485 (533)
T ss_pred CCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCC--------CC------
Confidence 9999999999999995 899999999999999999999999999653 46788888877531 00
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 612 QLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 612 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
..++|.++++ ..|+.|++|..+++++++| +|++||++|+.|+++..+
T Consensus 486 -----------~~~~l~~~l~-~~l~~~~~P~~i~~~~~iP------~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 486 -----------DLAELRAHCR-SSLAGYKVPRAIWFVDEVQ------RSPAGKADYRWAKEQAAE 532 (533)
T ss_pred -----------CHHHHHHHHh-hhcccCCCCeEEEEcccCC------CCCcchhhHHHHhhhhcc
Confidence 1345555664 6799999999999999999 999999999999998764
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-61 Score=538.64 Aligned_cols=506 Identities=23% Similarity=0.290 Sum_probs=391.1
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
+++.+.|++.++.+|+++|+... + ..+||+||.+++.++|++|.+.|+++||+|+|+++|+++++++++||
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~ 88 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV 88 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 58889999999999999999753 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (695)
+++|++++|+++.++.+++.++++.++++.++++.+....+.+.....+..+. +.++....... ....+...++.+
T Consensus 89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~ 164 (545)
T PRK08162 89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKP-LVIDVDDPEYP---GGRFIGALDYEA 164 (545)
T ss_pred HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCce-EEEecCccccc---cCCCcccccHHH
Confidence 99999999999999999999999999999999998877666554433333222 22222111000 011123345666
Q ss_pred HHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHH
Q 005468 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (695)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 318 (695)
+............+.+.+++++|+|||||||.||||+++|+++...+......+.+..++++++.+|++|.+++...+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~ 244 (545)
T PRK08162 165 FLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTV 244 (545)
T ss_pred HhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHH
Confidence 65443221111122345689999999999999999999999987666555545667788999999999999998775544
Q ss_pred -HHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 005468 319 -VYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (695)
Q Consensus 319 -l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (695)
+..|.++.+...++..+++.++++++|++.++|++++.|.+.....
T Consensus 245 ~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------- 291 (545)
T PRK08162 245 AARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEW--------------------------------- 291 (545)
T ss_pred HHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccc---------------------------------
Confidence 4444444444479999999999999999999999999887521100
Q ss_pred HHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----------CCCCCcC
Q 005468 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLSGHVG 466 (695)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~~vG 466 (695)
+..+ .+.+.+++||+++++++.++++.. ++++++.||+||+++.+..+.... ...+++|
T Consensus 292 --------~~~~-~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 361 (545)
T PRK08162 292 --------RAGI-DHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQG 361 (545)
T ss_pred --------ccCC-ccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccchhhccCCCC
Confidence 0000 245566889999999999998874 899999999999865444322110 1234567
Q ss_pred CCcc-CcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCC
Q 005468 467 SPNA-ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (695)
Q Consensus 467 ~p~~-~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (695)
.+.+ +..++|+|.+++..++.+.. ..|||+|+|+.++.|||++++.+.+.| .+|||+|||+|++|+||.++++||.|
T Consensus 362 ~~~~~~~~~~i~d~~~~~~~~~~g~-~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~ 439 (545)
T PRK08162 362 VRYPLQEGVTVLDPDTMQPVPADGE-TIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSK 439 (545)
T ss_pred cccCCcceEEEEcCCCCcccCCCCC-ceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEeccc
Confidence 6655 34678888656655544210 269999999999999999999999999 68999999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005468 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAA 622 (695)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (695)
|+||+ +|++|+|.+||++|.++|+|.+++|++.+. ++.++++|++.++. ..
T Consensus 440 ~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~--------~~----------------- 493 (545)
T PRK08162 440 DIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGA--------SA----------------- 493 (545)
T ss_pred ceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCC--------CC-----------------
Confidence 99995 899999999999999999999999999653 45788888877531 00
Q ss_pred HHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 623 VLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 623 i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
..++|+++++ +.|+.|++|..+.+ .++| +|++||++|+.|++.+.+
T Consensus 494 ~~~~l~~~~~-~~l~~~~~P~~~~~-~~iP------~t~~gK~~r~~l~~~~~~ 539 (545)
T PRK08162 494 TEEEIIAHCR-EHLAGFKVPKAVVF-GELP------KTSTGKIQKFVLREQAKS 539 (545)
T ss_pred CHHHHHHHHH-HhcccccCCcEEEe-cccC------CCCCcCCcHHHHHHHHhh
Confidence 1345666665 68999999999875 5798 999999999999887554
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-62 Score=645.21 Aligned_cols=481 Identities=18% Similarity=0.219 Sum_probs=404.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...+++++|.++++++||++|+.+. ++ .+||+||.++++++|++|.+.|+++|++|+|+++|++++++++|
T Consensus 1129 ~~~~l~~~~~~~a~~~p~~~Al~~~---~~------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 1199 (4334)
T PRK05691 1129 AQAWLPELLNEQARQTPERIALVWD---GG------SLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199 (4334)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEC---Cc------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4568999999999999999999864 33 49999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|+++||+++.++.+++.+++++++++++|++......+.. ..... ++.++... .
T Consensus 1200 ailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~----~~~~~-~~~~~~~~----------------~ 1258 (4334)
T PRK05691 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQ----AEGVS-AIALDSLH----------------L 1258 (4334)
T ss_pred HHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccc----ccCce-EEeecccc----------------c
Confidence 999999999999999999999999999999999998765443321 11111 12221110 0
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (695)
.......+.....++++++++|||||||.||||+++|+++.+.+.+....+++.++|+++++.|++|..++...+
T Consensus 1259 -----~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~ 1333 (4334)
T PRK05691 1259 -----DSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECF 1333 (4334)
T ss_pred -----cccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHH
Confidence 000001122234678999999999999999999999999999998888888999999999999999999998899
Q ss_pred HHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 317 MTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 317 ~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
.+|+.|+++++.+ .++..+++.|+++++|++.++|++++.+.+....
T Consensus 1334 ~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----------------------------- 1384 (4334)
T PRK05691 1334 WPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA----------------------------- 1384 (4334)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc-----------------------------
Confidence 9999999999975 5888999999999999999999999887642100
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccC--CCCCCCCCcCCCc
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLD--EGDNLSGHVGSPN 469 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~ 469 (695)
...++||.+++||+++++++.+.|.+.+ +++++|.||+||++..++... ..+...+++|+|+
T Consensus 1385 ---------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~ 1449 (4334)
T PRK05691 1385 ---------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPL 1449 (4334)
T ss_pred ---------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCccccee
Confidence 0015899999999999999999998877 688999999999987665432 2234567899999
Q ss_pred cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCC-------CCeeecccEEEEecCCcEEEEe
Q 005468 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-------DGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~-------~gw~~TGDlg~~~~dG~l~i~G 542 (695)
++++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|.+.|.. .+||+|||+|++++||.++|+|
T Consensus 1450 ~~~~~~i~d-~~~~~vp~G~---~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~G 1525 (4334)
T PRK05691 1450 GNVLCRVLD-AELNLLPPGV---AGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLG 1525 (4334)
T ss_pred CCCEEEEEC-CCCCCCCCCC---ceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEec
Confidence 999999999 6677788886 8999999999999999999999999843 3599999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC--CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRAR 620 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (695)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.. .+..++|++++..+. ..
T Consensus 1526 R~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~--------~~--------------- 1581 (4334)
T PRK05691 1526 RLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQ--------EA--------------- 1581 (4334)
T ss_pred ccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCC--------CC---------------
Confidence 99999998 89999999999999999999999998754 346899999876531 00
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHH
Q 005468 621 AAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQY 673 (695)
Q Consensus 621 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~ 673 (695)
..++|+++++ .+||.|++|..|+.++++| +|++|||+|++|.+.
T Consensus 1582 --~~~~l~~~l~-~~Lp~y~vP~~~~~~~~lP------~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691 1582 --EAERLKAALA-AELPEYMVPAQLIRLDQMP------LGPSGKLDRRALPEP 1625 (4334)
T ss_pred --CHHHHHHHHH-HhCccccCCcEEEEccccC------CCCCCCcChhhcCcc
Confidence 0335666665 7899999999999999999 999999999999653
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-62 Score=539.00 Aligned_cols=458 Identities=16% Similarity=0.143 Sum_probs=338.9
Q ss_pred ccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccc------hhHHHhcccCCCCceEEEEECCC
Q 005468 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT------LNSLLSCLSEVPTVRLIVVIGGI 218 (695)
Q Consensus 145 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~------~~~~~~~~~~~~~l~~ii~~~~~ 218 (695)
++|++|+++++|||+++|+++||+++.++.+++.+++++++++++|++... .+.+.+.....+ .+.+++....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 79 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG 79 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence 589999999999999999999999999999999999999999999998642 122222211111 2333332211
Q ss_pred CCCCCCCCcCCCceEeeHHHHHhccccC------CCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcccc
Q 005468 219 DDQIPSLPITTGVQILTYSNLLSQGRSN------LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT 292 (695)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 292 (695)
.. ... .......+|.+++..+... ........++|+++|+|||||||.||||++||++++.........+
T Consensus 80 ~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 155 (499)
T PLN03051 80 EP-VAV---PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM 155 (499)
T ss_pred cc-cCC---ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc
Confidence 10 000 0000123566665322110 1111123568999999999999999999999999887665555556
Q ss_pred ccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccc
Q 005468 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370 (695)
Q Consensus 293 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 370 (695)
++.++|++++.+|++|.+++...+.+++.|+++++++ +++..+++.|+++++|++.++|+++..|.+......
T Consensus 156 ~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~----- 230 (499)
T PLN03051 156 DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAM----- 230 (499)
T ss_pred CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccc-----
Confidence 7889999999999999999877777899999999876 478899999999999999999999998765210000
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh--CCccccccccccc
Q 005468 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTET 448 (695)
Q Consensus 371 ~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--g~~v~~~YG~TE~ 448 (695)
.....++||.+++||+++++++.+++++.+ +++++++||+||+
T Consensus 231 -----------------------------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~ 275 (499)
T PLN03051 231 -----------------------------------EGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTEL 275 (499)
T ss_pred -----------------------------------ccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccc
Confidence 000014899999999999999998887743 4789999999998
Q ss_pred cccccccCC-CCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCcc--chhccCChhhhhcccCC-----
Q 005468 449 SCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLI--FKGYYKDEIQTKEVIDE----- 520 (695)
Q Consensus 449 ~~~~~~~~~-~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v--~~gY~~~~~~t~~~~~~----- 520 (695)
++.++.... .....+++|.|.++++++|+| ++++.++.|+. ..|||+|+|+.+ +.|||+++ .+...++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~-~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~ 352 (499)
T PLN03051 276 ASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQP-CVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYG 352 (499)
T ss_pred cceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCC-cceEEEEecCcCCCCccccCCc-ccceeeecCCccc
Confidence 754332222 223567899999999999999 56666666531 279999999976 58999865 34333321
Q ss_pred ---CCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhc-CcCcceEEEEeeCC---C-CeEEEEE---
Q 005468 521 ---DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK-CKFVGQCFVYGDSF---N-SALVAIV--- 589 (695)
Q Consensus 521 ---~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~-~p~V~~~~V~g~~~---~-~~~va~v--- 589 (695)
.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+ ||+|.+|+|+|.++ + +.++|+|
T Consensus 353 ~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~ 431 (499)
T PLN03051 353 SKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLG 431 (499)
T ss_pred cCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcc
Confidence 127999999999999999999999999996 8999999999999986 99999999999654 3 4688888
Q ss_pred EeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHH
Q 005468 590 SVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQ 669 (695)
Q Consensus 590 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~ 669 (695)
+++++.. .. .. +.+.+.+++.++ ++|+.|.+|..|++++++| +|++|||+|++
T Consensus 432 v~~~~~~-------~~---------~~----~~l~~~~~~~l~-~~l~~~~~~~~i~~v~~lP------~t~~GKi~r~~ 484 (499)
T PLN03051 432 EEKKGFD-------QA---------RP----EALQKKFQEAIQ-TNLNPLFKVSRVKIVPELP------RNASNKLLRRV 484 (499)
T ss_pred eeccccc-------cc---------ch----HHHHHHHHHHHH-hhcCCccCCceEEEcCCCC------CCCCccHHHHH
Confidence 6654210 00 11 233444444444 5688877777899999999 99999999999
Q ss_pred HHHHHHHHH
Q 005468 670 AKQYFAKAI 678 (695)
Q Consensus 670 l~~~~~~~i 678 (695)
|++.+.+.+
T Consensus 485 L~~~~~~~~ 493 (499)
T PLN03051 485 LRDQLKKEL 493 (499)
T ss_pred HHHHHHHhh
Confidence 998776654
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-61 Score=534.00 Aligned_cols=478 Identities=22% Similarity=0.265 Sum_probs=388.7
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEe
Q 005468 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191 (695)
Q Consensus 112 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~ 191 (695)
+.+||.||.+++.++|++|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHhcccCCC-CceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCC
Q 005468 192 VPQTLNSLLSCLSEVP-TVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGT 270 (695)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 270 (695)
+......+.+.....+ .++.+++.+... .....|++....... ......++.++++|||||||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGtTG~ 154 (502)
T PRK08276 90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQPD----TPIADETAGADMLYSSGTTGR 154 (502)
T ss_pred ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCCC----CCCCCCCcceEEEECCCCCCC
Confidence 9877666554444443 455555543211 112345555432211 122355778999999999999
Q ss_pred CceEEechHHHHHHH------HhhccccccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEec-CChhhHHHHHHhcC
Q 005468 271 PKGAVLSHGNLIASV------AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALR 343 (695)
Q Consensus 271 PKgV~~th~~l~~~~------~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~ 343 (695)
||+|+++|.++.... ...........++++++.+|++|.+++...+.++..|+++++.+ +++..+++.+++++
T Consensus 155 PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 234 (502)
T PRK08276 155 PKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR 234 (502)
T ss_pred CceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence 999999987754322 11111222357889999999999999888888999999998877 78999999999999
Q ss_pred CeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCC
Q 005468 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423 (695)
Q Consensus 344 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l 423 (695)
+|++.++|+++..+.+..... ...+| .+++|.+++||+++
T Consensus 235 ~t~~~~~P~~~~~l~~~~~~~-----------------------------~~~~~-----------~~~lr~i~~~g~~~ 274 (502)
T PRK08276 235 VTHSQLVPTMFVRMLKLPEEV-----------------------------RARYD-----------VSSLRVAIHAAAPC 274 (502)
T ss_pred CeEEEehHHHHHHHHhCcccc-----------------------------CCCCC-----------cccceEEEecCCCC
Confidence 999999999998886521000 00001 15899999999999
Q ss_pred cHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCc
Q 005468 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPL 502 (695)
Q Consensus 424 ~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~ 502 (695)
+.++.+++.+.+|..+++.||+||++++++..... ....+++|.|+ +++++++| +++..++.|+ .|||+++|+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~ 349 (502)
T PRK08276 275 PVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELPPGE---IGTVYFEMDG 349 (502)
T ss_pred CHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCCcCCC---ceEEEEECCC
Confidence 99999999998899999999999998766554332 24567899999 88999998 5667777775 8999999999
Q ss_pred cchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC-
Q 005468 503 IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF- 581 (695)
Q Consensus 503 v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~- 581 (695)
++.||+++++.+.+.+..+|||+|||+|+++++|.+++.||.||+||+ +|++|+|.+||.++.++|+|.+|+|++..+
T Consensus 350 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~ 428 (502)
T PRK08276 350 YPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPDE 428 (502)
T ss_pred ccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCCc
Confidence 999999999999999977799999999999999999999999999996 899999999999999999999999999654
Q ss_pred --CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCcc
Q 005468 582 --NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLL 659 (695)
Q Consensus 582 --~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~ 659 (695)
++.++++|++.+... .+++ ..+++.+.++ .+|+.+++|..+++++++| +
T Consensus 429 ~~~~~~~~~v~~~~~~~------------------~~~~----~~~~i~~~~~-~~l~~~~~p~~i~~~~~lP------~ 479 (502)
T PRK08276 429 EMGERVKAVVQPADGAD------------------AGDA----LAAELIAWLR-GRLAHYKCPRSIDFEDELP------R 479 (502)
T ss_pred ccCceEEEEEEECCCCC------------------CChh----hHHHHHHHHH-hhccCCCCCcEEEEecCCC------C
Confidence 458999999875310 0111 2344555554 6899999999999999999 9
Q ss_pred CccccCChHHHHHHHHHHHH
Q 005468 660 TPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 660 t~~gKi~R~~l~~~~~~~i~ 679 (695)
|++||++|++|++.|-..-+
T Consensus 480 t~~GKi~r~~L~~~~~~~~~ 499 (502)
T PRK08276 480 TPTGKLYKRRLRDRYWEGRQ 499 (502)
T ss_pred CcccchhHHHHHHHHHhhhh
Confidence 99999999999999876543
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-61 Score=543.00 Aligned_cols=504 Identities=19% Similarity=0.225 Sum_probs=371.4
Q ss_pred CHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHH
Q 005468 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (695)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (695)
++.++|++++..+|+++|+.+........+..+.+||+||.+++.++|++|.+.| .+||+|+|+++|+++|++++|||+
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 6889999999999999999875110011123467999999999999999999999 689999999999999999999999
Q ss_pred hcCCeEEeccC---CCCHHHHHHHHHhccccEEEecccchhHHHhcccCCC--CceEEEEECCCCCCCCCCCcCCCceEe
Q 005468 160 AYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP--TVRLIVVIGGIDDQIPSLPITTGVQIL 234 (695)
Q Consensus 160 ~~G~v~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (695)
++|+++||+++ .++.+++.++++++++++++++.+..+.+........ ....++.++..
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 144 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL---------------- 144 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc----------------
Confidence 99999999997 4578899999999999999999877665543221111 11112222110
Q ss_pred eHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc-cc-----cCCCcEEEEeCChhh
Q 005468 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TK-----FYPSDVYISYLPLAH 308 (695)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-~~-----~~~~d~~l~~~pl~h 308 (695)
++ ............++++++|+|||||||.||||+++|+++++.+...... +. ...++++++++|++|
T Consensus 145 ---~~---~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h 218 (578)
T PRK05850 145 ---DL---DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH 218 (578)
T ss_pred ---cc---ccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCC
Confidence 00 0000011123457899999999999999999999999998876554322 11 356889999999999
Q ss_pred HHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHH-HHHHHhcccchHHHHHHHHHH
Q 005468 309 IYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAG-ITSAVRTSGGLRERLFNAAYN 381 (695)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~~~~~~~~~a~~ 381 (695)
.++++. .+.+++.|+++++.+ .++..+++.+.+++++++ .+|..+..+... ....
T Consensus 219 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~----------------- 280 (578)
T PRK05850 219 DMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD----------------- 280 (578)
T ss_pred CchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh-----------------
Confidence 999876 667899999999876 278999999999999855 566654333221 0000
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------Ccccccccccccccccccc
Q 005468 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQL 455 (695)
Q Consensus 382 ~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~~~ 455 (695)
.......+++|.+++||+++++++.++|.+.|+ ..+++.||+||++..+...
T Consensus 281 ----------------------~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 338 (578)
T PRK05850 281 ----------------------DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATR 338 (578)
T ss_pred ----------------------hhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheecc
Confidence 000000147999999999999999999988773 3689999999987654432
Q ss_pred CCCCC-------------------------CCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCC
Q 005468 456 DEGDN-------------------------LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510 (695)
Q Consensus 456 ~~~~~-------------------------~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~ 510 (695)
..... ...++|.|. +.+++++|.+++..++.|+ .|||+|+|++++.|||++
T Consensus 339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~ 414 (578)
T PRK05850 339 EPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGT---VGEIWVHGDNVAAGYWQK 414 (578)
T ss_pred CCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCC---EEEEEEecCcccccccCC
Confidence 21110 012345553 5799999976677777776 899999999999999999
Q ss_pred hhhhhcccC-----------CCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEee
Q 005468 511 EIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGD 579 (695)
Q Consensus 511 ~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~ 579 (695)
|+.|++.|. .+|||+|||+|+++ ||+++|+||+||+||+ +|++|+|.|||+++.+||.+. ++|++.
T Consensus 415 ~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~~-~~v~~v 491 (578)
T PRK05850 415 PEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGGR-VAAISV 491 (578)
T ss_pred hhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCCc-EEEEEe
Confidence 999999884 25799999999998 9999999999999997 899999999999999999854 777775
Q ss_pred CC--CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEee--cCCCCC
Q 005468 580 SF--NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVL--EPFTVE 655 (695)
Q Consensus 580 ~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~--~~p~~~ 655 (695)
++ .+.++|+|++.+... .. . .+......+.+++.+.+.. .....|..+.+++ ++|
T Consensus 492 ~~~~~~~~~a~v~~~~~~~--------~~-~------~~~~~~~~l~~~v~~~l~~---~~~~~~~~~~~~~~~~iP--- 550 (578)
T PRK05850 492 PDDGTEKLVAIIELKKRGD--------SD-E------EAMDRLRTVKREVTSAISK---SHGLSVADLVLVAPGSIP--- 550 (578)
T ss_pred cCCCceEEEEEEEeccccC--------cc-h------hhhhhHHHHHHHHHHHHHH---HhCCCceEEEEeCCCCcC---
Confidence 53 467889998775320 00 0 0001123344444443321 1122466666765 788
Q ss_pred CCccCccccCChHHHHHHHHHH
Q 005468 656 NGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 656 ~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
+|++||++|++|+++|++.
T Consensus 551 ---~t~~GKi~R~~l~~~~~~~ 569 (578)
T PRK05850 551 ---ITTSGKIRRAACVEQYRQD 569 (578)
T ss_pred ---CCCCchHHHHHHHHHHHcC
Confidence 9999999999999998764
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=513.15 Aligned_cols=510 Identities=20% Similarity=0.266 Sum_probs=411.2
Q ss_pred CCCHHH-HHHHHHHh-cCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 78 IGTTHD-NFVRAVDT-FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 78 ~~tl~~-~l~~~a~~-~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
..++.+ .+.+..+. -++.+++.++ +...++...+||.|+.+++.++|..|.+.|+++||+|++++|+.+|+++++
T Consensus 62 ~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~ 138 (626)
T KOG1175|consen 62 FLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAM 138 (626)
T ss_pred hhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHH
Confidence 334443 34444444 4888998887 333333344899999999999999999889999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchh---------HHHhcccCCC-----CceEEEEECCCCCC
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN---------SLLSCLSEVP-----TVRLIVVIGGIDDQ 221 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~---------~~~~~~~~~~-----~l~~ii~~~~~~~~ 221 (695)
+||.++|++.+++-..+++.++...+++++++++|+.+.... .+.+++..++ ....+++.+.
T Consensus 139 lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 214 (626)
T KOG1175|consen 139 LACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR---- 214 (626)
T ss_pred HHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc----
Confidence 999999999999999999999999999999999999864322 1222111111 1111111111
Q ss_pred CCCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHH-HHHHHHhhccccccCCCcEE
Q 005468 222 IPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN-LIASVAGATLGTKFYPSDVY 300 (695)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~-l~~~~~~~~~~~~~~~~d~~ 300 (695)
.+.+.|++++..... ..++...+.+|+.+|+|||||||.||++.+++.. ++..+......+.+.++|++
T Consensus 215 ---------~~d~~~~~~~~~a~~-~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~ 284 (626)
T KOG1175|consen 215 ---------NRDLFWSLELKKASP-EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVL 284 (626)
T ss_pred ---------cccccHHHHhhhcCC-CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceE
Confidence 013455555444433 2336677889999999999999999999998876 55556666667899999999
Q ss_pred EEeCChhhHHHHHHH-HHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHH
Q 005468 301 ISYLPLAHIYERANQ-VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376 (695)
Q Consensus 301 l~~~pl~h~~~~~~~-~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 376 (695)
.++..+.|+.+.+.. +.+|+.|++++++. +++..+++.+.++++|++++.|+.++.+.+.......
T Consensus 285 ~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~---------- 354 (626)
T KOG1175|consen 285 WCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVT---------- 354 (626)
T ss_pred EEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccccc----------
Confidence 999999999998884 55999999999987 4889999999999999999999999987653211110
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-cccccccccccccccccc
Q 005468 377 NAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQL 455 (695)
Q Consensus 377 ~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~ 455 (695)
.++ + ++||.+.++|+|+.++..+++.+.++. +|++.||+||+|+.+...
T Consensus 355 -------------------~~~----------~-~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~ 404 (626)
T KOG1175|consen 355 -------------------SYS----------L-KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITP 404 (626)
T ss_pred -------------------ccc----------c-ceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeec
Confidence 011 0 379999999999999999999999987 699999999999988877
Q ss_pred CCCC--CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCC---ccchhccCChhhhhcccCC--CCeeeccc
Q 005468 456 DEGD--NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVIDE--DGWFHTGD 528 (695)
Q Consensus 456 ~~~~--~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~---~v~~gY~~~~~~t~~~~~~--~gw~~TGD 528 (695)
.+.. ..+|+.|.|.+|+.+.|+|. ++...+... ..|||+++.+ +.+++||+|++.-....-. .|+|.|||
T Consensus 405 ~~g~~p~~pg~~~~p~~g~~v~i~de-~g~~~~~~~--~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD 481 (626)
T KOG1175|consen 405 KPGKLPIKPGSAGKPFPGYDVQILDE-NGNELPPST--GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGD 481 (626)
T ss_pred cCCCCCcCccccCCCCCCcceEEECC-CCCCcCCCC--ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecC
Confidence 7776 88999999999999999994 666655543 3899999974 7799999999944433324 79999999
Q ss_pred EEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCC
Q 005468 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGI 605 (695)
Q Consensus 529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~ 605 (695)
.+++|+||++++.||.||+|++ +|.++++.|||+++..||.|.|++|+|.++ ++.++|||++.++.
T Consensus 482 ~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~---------- 550 (626)
T KOG1175|consen 482 GGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGS---------- 550 (626)
T ss_pred ceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCC----------
Confidence 9999999999999999999997 899999999999999999999999999764 57899999999842
Q ss_pred CcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 606 QYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 606 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
...+.+.++|+...| +.+.+|..|+.|++++++| +|.+||+.|+.|++....+
T Consensus 551 ------------~~~~~L~kel~~~VR-~~igp~a~P~~I~~v~~LP------kTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 551 ------------HDPEQLTKELVKHVR-SVIGPYAVPRLIVFVPGLP------KTRSGKIMRRALRKIASGK 603 (626)
T ss_pred ------------CChHHHHHHHHHHHH-hhcCcccccceeEecCCCC------ccccchhHHHHHHHHhccC
Confidence 112455666677776 7899999999999999999 9999999999999988765
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=562.52 Aligned_cols=489 Identities=16% Similarity=0.172 Sum_probs=369.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+...|+.++|.+.++++||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~ 514 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI 514 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45578999999999999999999763 2 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
+||+++|++++|+++. +++.+++++++++++|++......+... ...+++++.......... .......
T Consensus 515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~~~~~~--~~~~~~~ 583 (994)
T PRK07868 515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL------PGRVLVLGGGESRDLDLP--DDADVID 583 (994)
T ss_pred HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc------CceEEEecCCccccccCC--cchhhhh
Confidence 9999999999999985 6899999999999999987766655331 134555543211000000 0000111
Q ss_pred HHHHHhccccCC--CCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHH
Q 005468 236 YSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (695)
Q Consensus 236 ~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~ 313 (695)
++++.......+ ....+..++|+++|+|| ||||.||++.++|.++..........+.+.++|++++.+|++|++++.
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~ 662 (994)
T PRK07868 584 MEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLL 662 (994)
T ss_pred hhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHH
Confidence 211111000000 01112236899999999 588888888888877655544444456788999999999999999998
Q ss_pred HHHHH-HHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCC
Q 005468 314 NQVMT-VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (695)
Q Consensus 314 ~~~~~-l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (695)
..+.+ +..|+++++.+ +++..+++.|+++++|+++++|++++.+.+....
T Consensus 663 ~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~---------------------------- 714 (994)
T PRK07868 663 VSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF---------------------------- 714 (994)
T ss_pred HHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC----------------------------
Confidence 76654 55555565554 7999999999999999999999999888652000
Q ss_pred CCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCCCCCCCCCcCCCcc
Q 005468 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470 (695)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 470 (695)
. ....+++|.++ | +.+++++.+.+.+.++ ++++++||+||++...+ . ......+++|+|+|
T Consensus 715 ---~-----------~~~~~slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~-~~~~~~~svG~p~p 776 (994)
T PRK07868 715 ---V-----------LHGNHPVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-N-VSGAKIGSKGRPLP 776 (994)
T ss_pred ---c-----------cCCCCceEEEe-c-CCCCHHHHHHHHHHhCchheeeeeeccccccccc-c-cCCCCCcccCCccC
Confidence 0 00014788776 3 3499999999999886 78999999999875443 2 22346689999999
Q ss_pred Cc-EEEEeec----------CCC--CCCCCCCCCCcceEEEeCCccchhccCChhhh--hcccC-CCCeeecccEEEEec
Q 005468 471 AC-EIKLVDV----------PEM--NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQT--KEVID-EDGWFHTGDIGMWIP 534 (695)
Q Consensus 471 ~~-~v~i~d~----------~~~--~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t--~~~~~-~~gw~~TGDlg~~~~ 534 (695)
++ +++|.+. +++ +.++.| +.|||+++|+.. + +|+.+ ...|. .+|||+|||+|++|+
T Consensus 777 g~~~v~i~~~d~~~g~li~d~~G~~~~~~~g---e~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~ 848 (994)
T PRK07868 777 GAGRVELAAYDPEHDLILEDDRGFVRRAEVN---EVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDD 848 (994)
T ss_pred CCCceeEEEecCcCCceeecCCceEEEcCCC---CceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcC
Confidence 98 7777521 112 223334 489999999863 3 45443 23353 489999999999999
Q ss_pred CCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEEeCHHHHHHHHHHcCCCcccHHH
Q 005468 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVDQDALKAWAASEGIQYENLEQ 612 (695)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~ 612 (695)
||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ .+.++|+|++.++. .++
T Consensus 849 dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~--------~~~------ 913 (994)
T PRK07868 849 DGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGA--------AIT------ 913 (994)
T ss_pred CCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCC--------cCC------
Confidence 9999999999999996 788999999999999999999999999754 35789999987631 111
Q ss_pred hhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHH
Q 005468 613 LCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQY 673 (695)
Q Consensus 613 ~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~ 673 (695)
.++|+++++ + |+.|++|+.|++++++| +|++||++|++|+++
T Consensus 914 -----------~~~L~~~l~-~-l~~y~vP~~i~~v~~lP------~T~sGKi~r~~L~~~ 955 (994)
T PRK07868 914 -----------AADLTEALA-S-LPVGLGPDIVHVVPEIP------LSATYRPTVSALRAA 955 (994)
T ss_pred -----------HHHHHHHHH-h-CCCCcCCeEEEEeCCCC------CCccccEehHHHHhc
Confidence 356777775 3 89999999999999999 999999999999765
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-60 Score=526.13 Aligned_cols=480 Identities=22% Similarity=0.271 Sum_probs=382.0
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEe
Q 005468 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191 (695)
Q Consensus 112 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~ 191 (695)
+.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHhcccCCCCceEEEEECCCCCCC-----CCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccC
Q 005468 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQI-----PSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSG 266 (695)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 266 (695)
+......+.+.... ...++......... ............+|+++..... +.....++++++++||||
T Consensus 90 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG 162 (509)
T PRK12406 90 HADLLHGLASALPA---GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG 162 (509)
T ss_pred ccchhhhhhhhhhc---ccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence 88766655433211 11122222110000 0000001112345665543221 122345789999999999
Q ss_pred CCCCCceEEechHHH---HHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEec-CChhhHHHHHHhc
Q 005468 267 TTGTPKGAVLSHGNL---IASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAAL 342 (695)
Q Consensus 267 TTG~PKgV~~th~~l---~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~ 342 (695)
|||.||+|+++|.+. ..........+++.+++++++.+|++|.++....+.++..|+++++.+ .++..+++.++++
T Consensus 163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 242 (509)
T PRK12406 163 TTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIERH 242 (509)
T ss_pred CCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHHHHHc
Confidence 999999999876553 333333344577889999999999999998877777888999998876 6899999999999
Q ss_pred CCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCC
Q 005468 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422 (695)
Q Consensus 343 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~ 422 (695)
++|++.++|+++..+++...... +....+++|.+++||++
T Consensus 243 ~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------~~~~~~~l~~v~~gg~~ 282 (509)
T PRK12406 243 RITHMHMVPTMFIRLLKLPEEVR----------------------------------------AKYDVSSLRHVIHAAAP 282 (509)
T ss_pred CCeEEEccHHHHHHHHhCchhhc----------------------------------------ccCCCCceeEEEEcCCC
Confidence 99999999999988765211000 00001589999999999
Q ss_pred CcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCC
Q 005468 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP 501 (695)
Q Consensus 423 l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~ 501 (695)
+++++.+++.+.+++.+++.||+||++.+++..... ...++++|.|+++++++++| +++..++.|+ .|||+++|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~ 358 (509)
T PRK12406 283 CPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGE---IGEIYSRIA 358 (509)
T ss_pred CCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCCCCCC---ceEEEEECC
Confidence 999999999998999999999999998766544322 24567899999999999999 5566666675 899999999
Q ss_pred ccch-hccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC
Q 005468 502 LIFK-GYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS 580 (695)
Q Consensus 502 ~v~~-gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~ 580 (695)
+++. ||+++++.+.+.+ .+|||+|||+|++|+||.+++.||.||+||+ +|++|+|.+||++|.++|+|.+++|++.+
T Consensus 359 ~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~ 436 (509)
T PRK12406 359 GNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAVFGIP 436 (509)
T ss_pred ccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeee
Confidence 9875 9999999888776 7999999999999999999999999999996 89999999999999999999999999865
Q ss_pred C---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCC
Q 005468 581 F---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENG 657 (695)
Q Consensus 581 ~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~ 657 (695)
+ ++.++++|++++.. +.. .++|++.++ ..|+.|++|..+.+++++|
T Consensus 437 ~~~~~~~~~~~v~~~~~~--------~~~-----------------~~~l~~~l~-~~l~~~~~P~~i~~~~~iP----- 485 (509)
T PRK12406 437 DAEFGEALMAVVEPQPGA--------TLD-----------------EADIRAQLK-ARLAGYKVPKHIEIMAELP----- 485 (509)
T ss_pred ccccCceeEEEEEECCCC--------CCC-----------------HHHHHHHHH-HhcccCCCCcEEEEeccCC-----
Confidence 4 35688888876521 001 344555554 6799999999999999999
Q ss_pred ccCccccCChHHHHHHHHH
Q 005468 658 LLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 658 ~~t~~gKi~R~~l~~~~~~ 676 (695)
+|++||++|++|++.|..
T Consensus 486 -~t~~GK~~r~~L~~~~~~ 503 (509)
T PRK12406 486 -REDSGKIFKRRLRDPYWA 503 (509)
T ss_pred -CCCccchhHHHHHHHHHh
Confidence 999999999999987764
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-59 Score=507.67 Aligned_cols=432 Identities=24% Similarity=0.280 Sum_probs=357.8
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEeccc
Q 005468 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (695)
Q Consensus 115 Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 194 (695)
||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+.+..++++++++.+++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred chhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceE
Q 005468 195 TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGA 274 (695)
Q Consensus 195 ~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 274 (695)
..... +. ...+.++................+++++++|||||||.||+|
T Consensus 81 ~~~~~---------~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v 129 (436)
T TIGR01923 81 LEEKD---------FQ----------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAV 129 (436)
T ss_pred ccccc---------ee----------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEE
Confidence 32110 00 011111111111111112234568999999999999999999
Q ss_pred EechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCChhhHHHHHHhcCCeEEeechHHH
Q 005468 275 VLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLY 354 (695)
Q Consensus 275 ~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~ 354 (695)
+++|+++...+......+++.++|++++.+|++|.+++...+.++..|+++++.+.. ..+++.++++++|++.++|+++
T Consensus 130 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~~~P~~l 208 (436)
T TIGR01923 130 PHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHISLVPTQL 208 (436)
T ss_pred EEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEEeHHHHH
Confidence 999999999888888788899999999999999999998788899999999987633 3899999999999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH
Q 005468 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434 (695)
Q Consensus 355 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~ 434 (695)
..+.+... ...++|.+++||+++++++.++++.
T Consensus 209 ~~l~~~~~----------------------------------------------~~~~l~~~~~~G~~~~~~~~~~~~~- 241 (436)
T TIGR01923 209 NRLLDEGG----------------------------------------------HNENLRKILLGGSAIPAPLIEEAQQ- 241 (436)
T ss_pred HHHHhCcC----------------------------------------------CCCceEEEEECCCCCCHHHHHHHHH-
Confidence 88765200 0038999999999999999998876
Q ss_pred hCCccccccccccccccccccCCCC-CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhh
Q 005468 435 FGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQ 513 (695)
Q Consensus 435 ~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~ 513 (695)
+|+++++.||+||++..++...... ....++|.|++++++++.+.+. + +.|||+++|+.++.||+++++.
T Consensus 242 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~------~---~~Gel~v~~~~~~~gy~~~~~~ 312 (436)
T TIGR01923 242 YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNK------E---GHGEIMVKGANLMKGYLYQGEL 312 (436)
T ss_pred hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCC------C---CceEEEEECCccchhhCCChhh
Confidence 4999999999999987655443322 2223599999999999944222 1 2799999999999999999888
Q ss_pred hhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEE
Q 005468 514 TKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVS 590 (695)
Q Consensus 514 t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv 590 (695)
+...+ .+|||+|||+|++++||.+++.||.+|+||+ +|++|+|.+||+++.++|.|.+++|++.+. +..++++|+
T Consensus 313 ~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 390 (436)
T TIGR01923 313 TPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIV 390 (436)
T ss_pred hhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEE
Confidence 87766 6899999999999999999999999999996 899999999999999999999999999754 356788888
Q ss_pred eCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHH
Q 005468 591 VDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQA 670 (695)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l 670 (695)
++++. + .+++.++++ +.|+.|++|..|++++++| +|++||++|++|
T Consensus 391 ~~~~~----------~-----------------~~~l~~~l~-~~l~~~~~p~~i~~~~~iP------~t~~GK~~r~~L 436 (436)
T TIGR01923 391 SESDI----------S-----------------QAKLIAYLT-EKLAKYKVPIAFEKLDELP------YNASGKILRNQL 436 (436)
T ss_pred ECCCC----------C-----------------HHHHHHHHH-HhhhCCCCCeEEEEecCCC------CCCCCceecccC
Confidence 77521 1 234444554 6789999999999999999 999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=516.84 Aligned_cols=490 Identities=21% Similarity=0.260 Sum_probs=373.5
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.++.+.+...+..+|+.+++... ++ .+.+||.||++++.++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~ 74 (545)
T PRK07768 2 SRFTEKMYANARTSPRGMVTGEP---DA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL 74 (545)
T ss_pred chHHHHHHHHhhCCCcceEEecC---CC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 46888889999999999988654 44 267999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHH-------HHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCc
Q 005468 159 SAYSFISVPLYDTLGPDAV-------KYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l-------~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (695)
+++|++++|+++..+.+++ .++++.++++.+++++.....+.... . .+.
T Consensus 75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~-----------------------~~~ 130 (545)
T PRK07768 75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLE-E-----------------------KGI 130 (545)
T ss_pred HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhc-c-----------------------cCC
Confidence 9999999999998876544 55678889999999875443222111 0 011
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCC-cEEEEeCChhhHH
Q 005468 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS-DVYISYLPLAHIY 310 (695)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~-d~~l~~~pl~h~~ 310 (695)
..+.++++..... .......++++++|+|||||||.||||+++|+++...+.......++..+ |++++.+|++|.+
T Consensus 131 ~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 207 (545)
T PRK07768 131 RVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDM 207 (545)
T ss_pred ceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccch
Confidence 2345555543221 12234467999999999999999999999999999988877776777776 8999999999999
Q ss_pred HHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 005468 311 ERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (695)
Q Consensus 311 ~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (695)
++.. .+.++..|+++++++ .++..+.+.++++++|++.++|.++..+...+......
T Consensus 208 g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------- 270 (545)
T PRK07768 208 GMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP----------------- 270 (545)
T ss_pred HHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc-----------------
Confidence 9886 445799999988875 27788899999999999988888776655422110000
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH---hCC---ccccccccccccccccccCCC
Q 005468 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC---FGG---RVTEGYGMTETSCLISQLDEG 458 (695)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~---~g~---~v~~~YG~TE~~~~~~~~~~~ 458 (695)
..+ ..+++|.+++||+++++++.+++.+. +|. .+++.||+||++..++.....
T Consensus 271 ----------~~~-----------~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~ 329 (545)
T PRK07768 271 ----------GAF-----------DLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCG 329 (545)
T ss_pred ----------cCC-----------CchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCC
Confidence 000 11489999999999999999988874 554 499999999998655433221
Q ss_pred --------------------------CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChh
Q 005468 459 --------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512 (695)
Q Consensus 459 --------------------------~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~ 512 (695)
....+++|.|+++++++++| +++..++.++ .|||+++|+.++.||++++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~ 405 (545)
T PRK07768 330 AGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRG---VGVIELRGESVTPGYLTMDG 405 (545)
T ss_pred CCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCC---EEEEEEccCcccccccCCCC
Confidence 12346899999999999999 6667777665 89999999999999998655
Q ss_pred hhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC--C---CCeEEE
Q 005468 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS--F---NSALVA 587 (695)
Q Consensus 513 ~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~--~---~~~~va 587 (695)
... .++.+|||+|||+|+++++|.++++||.||+||+ +|++|+|.+||+.+.+||+|.+++|++.. + +..+++
T Consensus 406 ~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~ 483 (545)
T PRK07768 406 FIP-AQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAV 483 (545)
T ss_pred Ccc-cccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEE
Confidence 443 3447899999999999999999999999999997 89999999999999999999998877632 2 223444
Q ss_pred EEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEee--cCCCCCCCccCccccC
Q 005468 588 IVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVL--EPFTVENGLLTPTFKI 665 (695)
Q Consensus 588 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~--~~p~~~~~~~t~~gKi 665 (695)
++.+.... +......+.+.+++... ..+. .+|..|.+++ ++| +|++||+
T Consensus 484 ~v~~~~~~--------------------~~~~~~~l~~~~~~~l~-~~~~--~~p~~v~~v~~~~lP------~t~~GKi 534 (545)
T PRK07768 484 AVESNAFE--------------------DPAEVRRIRHQVAHEVV-AEVG--VRPRNVVVLGPGSIP------KTPSGKL 534 (545)
T ss_pred EEEecccc--------------------cHHHHHHHHHHHHHHHH-HHhC--CCccEEEEeCCCcCC------CCCchhH
Confidence 44433211 01111122333333221 1111 4677888886 788 9999999
Q ss_pred ChHHHHHHHH
Q 005468 666 KRPQAKQYFA 675 (695)
Q Consensus 666 ~R~~l~~~~~ 675 (695)
+|+.|++.|.
T Consensus 535 ~r~~l~~~~~ 544 (545)
T PRK07768 535 RRANAAELVT 544 (545)
T ss_pred HHHHHHHhcC
Confidence 9999998874
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=485.69 Aligned_cols=396 Identities=14% Similarity=0.126 Sum_probs=336.4
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEe
Q 005468 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191 (695)
Q Consensus 112 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~ 191 (695)
+.+||+||.++++++|++|. .|+++|++|+|+++|+++|+++++||+++|++++|+++..+.+.+..++++++++.+++
T Consensus 7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 85 (414)
T PRK08308 7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY 85 (414)
T ss_pred ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence 36999999999999999985 78999999999999999999999999999999999999999999999999999999998
Q ss_pred cccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCC
Q 005468 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTP 271 (695)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P 271 (695)
+..... . . ......++++++++|||||||.|
T Consensus 86 ~~~~~~---------------~--~--------------------------------~~~~~~~~~~~~i~~TSGtTG~P 116 (414)
T PRK08308 86 GESDFT---------------K--L--------------------------------EAVNYLAEEPSLLQYSSGTTGEP 116 (414)
T ss_pred cCcccc---------------c--c--------------------------------cCCCCCCCCceEEEECCCCCCCC
Confidence 652100 0 0 00123467899999999999999
Q ss_pred ceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEee
Q 005468 272 KGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCS 349 (695)
Q Consensus 272 KgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~ 349 (695)
|||++||+++.+.+......+.+..+|+.+..+|++|.+++.. .+.++..|+++++.+ .++..+++.++++++|++++
T Consensus 117 Kgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~ 196 (414)
T PRK08308 117 KLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYA 196 (414)
T ss_pred cEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEc
Confidence 9999999999998887777778889999999999999999865 667899999998877 68999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHH
Q 005468 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429 (695)
Q Consensus 350 ~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~ 429 (695)
+|+++..+.+.... ..+++.+++||+++++++.+
T Consensus 197 ~P~~~~~l~~~~~~----------------------------------------------~~~l~~~~~~G~~l~~~~~~ 230 (414)
T PRK08308 197 VPLMLHILGRLLPG----------------------------------------------TFQFHAVMTSGTPLPEAWFY 230 (414)
T ss_pred CHHHHHHHHhcCCc----------------------------------------------cccccEEEEccCCCCHHHHH
Confidence 99999887652100 02678899999999999999
Q ss_pred HHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccC
Q 005468 430 FLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK 509 (695)
Q Consensus 430 ~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~ 509 (695)
++++. +.++++.||+||++++... ......+++|+|+|++++++.+. .++ .|||++++
T Consensus 231 ~~~~~-~~~~~~~YG~tE~~~~~~~--~~~~~~~~~G~p~~~~~~~~~~~-------~~~---~gel~v~~--------- 288 (414)
T PRK08308 231 KLRER-TTYMMQQYGCSEAGCVSIC--PDMKSHLDLGNPLPHVSVSAGSD-------ENA---PEEIVVKM--------- 288 (414)
T ss_pred HHHHh-CChhhhccCccccCCeeec--CCCCCCCccCccCCCeEEEEecC-------CCC---CceEEEEc---------
Confidence 99886 6789999999999864432 22345678999999999998752 233 79999975
Q ss_pred ChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEE
Q 005468 510 DEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALV 586 (695)
Q Consensus 510 ~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~v 586 (695)
.++||+|||+|++|+||+++++||.||+||+ +|++|+|.+||+++.++|+|.+|+|++.++ ++.++
T Consensus 289 ----------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~ 357 (414)
T PRK08308 289 ----------GDKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVK 357 (414)
T ss_pred ----------CCceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEE
Confidence 3689999999999999999999999999997 899999999999999999999999998654 35778
Q ss_pred EEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCC
Q 005468 587 AIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIK 666 (695)
Q Consensus 587 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~ 666 (695)
++++.++. ++ .++|+++++ ++|+.|++|..+.+++++| +|++||++
T Consensus 358 ~~v~~~~~----------~~-----------------~~~l~~~l~-~~l~~~~~P~~i~~v~~iP------~t~~GKi~ 403 (414)
T PRK08308 358 AKVISHEE----------ID-----------------PVQLREWCI-QHLAPYQVPHEIESVTEIP------KNANGKVS 403 (414)
T ss_pred EEEEeCCC----------CC-----------------HHHHHHHHH-HhCccccCCcEEEEeccCC------CCCCcCee
Confidence 88876541 11 244555665 6899999999999999999 99999999
Q ss_pred hHHH
Q 005468 667 RPQA 670 (695)
Q Consensus 667 R~~l 670 (695)
|+.|
T Consensus 404 r~~~ 407 (414)
T PRK08308 404 RKLL 407 (414)
T ss_pred hhhh
Confidence 9954
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=495.06 Aligned_cols=401 Identities=29% Similarity=0.458 Sum_probs=320.9
Q ss_pred HHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCe
Q 005468 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164 (695)
Q Consensus 85 l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v 164 (695)
|+++|+++||++|+.+ +..+++||+||++++.++|.+|.+.|+++|++|+|+++|+++|+++++||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 6889999999999986 12367999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHHHHHHhccccEEEe----cccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHH
Q 005468 165 SVPLYDTLGPDAVKYIVNHASVQAVFC----VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240 (695)
Q Consensus 165 ~vpl~~~~~~~~l~~il~~~~~~~vi~----~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (695)
++|+++.++.+++.+++++++++++|+ +......+............++.++..... ....+.
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 139 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLP-------------KKEALK 139 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCT-------------TCHHHH
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccc-------------cccccc
Confidence 999999999999999999999999997 222233344444333445666666543210 001111
Q ss_pred hccccCCCCCCC-CCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhc--cccccCCCcEEEEeCChhhHHHH-HHHH
Q 005468 241 SQGRSNLQPFSP-PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT--LGTKFYPSDVYISYLPLAHIYER-ANQV 316 (695)
Q Consensus 241 ~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~d~~l~~~pl~h~~~~-~~~~ 316 (695)
......... .+ ..++++++++|||||||.||+|.++|+++++.+..+. ...+++ |++++++|++|.+++ ...+
T Consensus 140 ~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~ 216 (417)
T PF00501_consen 140 SASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALL 216 (417)
T ss_dssp HHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHH
T ss_pred ccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccc
Confidence 100000000 00 0568999999999999999999999999999987754 222333 699999999999999 6678
Q ss_pred HHHHcCcEEeEecCC----hhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 317 MTVYSGVAVGFYQGD----NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 317 ~~l~~G~~~~~~~~~----~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
.+++.|+++++.+.. +..+++.+++++||+++++|+++..+.+..... ..
T Consensus 217 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~------------------------- 270 (417)
T PF00501_consen 217 AALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TK------------------------- 270 (417)
T ss_dssp HHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH-------------------------
T ss_pred ccccccccccccccccccccccchhccccccccccccccccccccccccccc-cc-------------------------
Confidence 899999999998832 467899999999999999999999987621111 00
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-ccccccccccccccccccCCCC--CCCCCcCCCc
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGD--NLSGHVGSPN 469 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~ 469 (695)
......+++|.+++||+++++++.+++++.++. ++++.||+||++.+++...... ...+++|.|+
T Consensus 271 ------------~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~ 338 (417)
T PF00501_consen 271 ------------ISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPL 338 (417)
T ss_dssp ------------GTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEES
T ss_pred ------------ccccccccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccc
Confidence 000011469999999999999999999999987 8999999999998887553222 5778999999
Q ss_pred cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeee
Q 005468 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (695)
Q Consensus 470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (695)
|+++++|+|.+++..++.|+ .|||+|+|+.++.||+++|+.|.+.|.++|||+|||+|++|+||+++++||.||+||
T Consensus 339 ~~~~~~ivd~~~~~~~~~g~---~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~ 415 (417)
T PF00501_consen 339 PGVEVKIVDPNTGEPLPPGE---PGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIK 415 (417)
T ss_dssp TTEEEEEECTTTSSBESTTS---EEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEE
T ss_pred cccccccccccccccccccc---cccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEE
Confidence 99999999977688888887 899999999999999999999999997668999999999999999999999999999
Q ss_pred c
Q 005468 550 L 550 (695)
Q Consensus 550 l 550 (695)
+
T Consensus 416 ~ 416 (417)
T PF00501_consen 416 V 416 (417)
T ss_dssp E
T ss_pred e
Confidence 6
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=440.00 Aligned_cols=501 Identities=23% Similarity=0.240 Sum_probs=385.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|++++|.++++++|+++|+++. +. .+.+||+|++++++++|++|+..|++.||.|+++++|++|++.++|
T Consensus 75 ~~~ti~~~F~~~vrr~p~k~aii~~---~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWl 147 (649)
T KOG1179|consen 75 ERRTIAELFLSQVRRQPDKPAIIYE---GP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWL 147 (649)
T ss_pred cCCcHHHHHHHHHHhCCCccEEEEe---CC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHH
Confidence 5579999999999999999999986 21 3569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCc-eEEEEECCCCCCCCCCCcCCCceEee
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
+.+++|++...||.++..+.+.|.|..++++++|++.+....+.++.+.+... -.++..+.... .....+
T Consensus 148 GLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~---------~~g~~~ 218 (649)
T KOG1179|consen 148 GLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV---------PDGIES 218 (649)
T ss_pred hHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC---------CchHHH
Confidence 99999999999999999999999999999999999999888887774432211 12222222110 011122
Q ss_pred HHHHHhccccCCCC---CCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHH
Q 005468 236 YSNLLSQGRSNLQP---FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (695)
Q Consensus 236 ~~~~~~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (695)
+...++.....+.+ ....+-.++++.+|||||||.||+.++||..+......+...++++++|+++..+||+|..+.
T Consensus 219 L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ 298 (649)
T KOG1179|consen 219 LLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAG 298 (649)
T ss_pred HHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHH
Confidence 33333333332222 233456789999999999999999999999998888877777999999999999999999998
Q ss_pred HH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcC
Q 005468 313 AN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (695)
Q Consensus 313 ~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (695)
+. +..++..|+|+++-. ++...+|++..++++|++.-+-.+.+-|+...
T Consensus 299 ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p----------------------------- 349 (649)
T KOG1179|consen 299 ILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQP----------------------------- 349 (649)
T ss_pred HHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCC-----------------------------
Confidence 87 456899999999977 89999999999999999999888888876521
Q ss_pred CCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCc-cccccccccccccccccCCCCCCCCCcCCCc
Q 005468 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (695)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (695)
+++- .-..++|.++ |.-+-+++++.|.++||.. |.+.||+||........ +...|.+|...
T Consensus 350 --~~~~-----------er~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~---d~~vGA~G~~~ 411 (649)
T KOG1179|consen 350 --PSPE-----------ERQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY---DGRVGACGFMS 411 (649)
T ss_pred --CChh-----------hcCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee---cCccccccchh
Confidence 1110 0114788776 5559999999999999866 99999999986543322 34445555421
Q ss_pred ------cCcEEEEeecCCCC-------CCCCCCCCCcceEEE--eCCcc---chhccCChhhhhccc------CCCCeee
Q 005468 470 ------AACEIKLVDVPEMN-------YTSEDQPCPRGEICV--RGPLI---FKGYYKDEIQTKEVI------DEDGWFH 525 (695)
Q Consensus 470 ------~~~~v~i~d~~~~~-------~~~~~~~~~~GEl~v--~g~~v---~~gY~~~~~~t~~~~------~~~gw~~ 525 (695)
--+++-=+|+++++ .|...+|++.|.+.- .-..- |.||.+..++|++.. ..|-||.
T Consensus 412 ~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~ 491 (649)
T KOG1179|consen 412 RLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFN 491 (649)
T ss_pred hhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEe
Confidence 11222223433333 233333445675542 22233 899999888887654 3455999
Q ss_pred cccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC--C--CCeEEEEEEeCHHHHHHHHH
Q 005468 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS--F--NSALVAIVSVDQDALKAWAA 601 (695)
Q Consensus 526 TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~--~--~~~~va~vv~~~~~~~~~~~ 601 (695)
|||+-.+|+.|++||.||..|.+.. .||||+..|||++|..+.+++|+.|+|+. . +..-.|.|+.+++.
T Consensus 492 tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~------ 564 (649)
T KOG1179|consen 492 TGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTT------ 564 (649)
T ss_pred eCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcc------
Confidence 9999999999999999999999998 89999999999999999999999999953 2 34556777766542
Q ss_pred HcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHH
Q 005468 602 SEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQY 673 (695)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~ 673 (695)
+...+.+-...+ ..||+|.+|..+.+.+++. +|.|.|.++..|.+.
T Consensus 565 -------------------~~d~~~l~~~l~-~~LP~YA~P~FlRl~~~i~------~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 565 -------------------EKDLEKLYQHLR-ENLPSYARPRFLRLQDEIE------KTGTFKLQKTELQKE 610 (649)
T ss_pred -------------------cchHHHHHHHHH-hhCccccchHHHHHHhhhh------cccchhhHHHHHHHc
Confidence 111344444444 7899999999999999999 999999999999874
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=461.80 Aligned_cols=389 Identities=22% Similarity=0.306 Sum_probs=325.9
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecc
Q 005468 115 TYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193 (695)
Q Consensus 115 Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 193 (695)
||.||.+.+.++|++|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+.+.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCce
Q 005468 194 QTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273 (695)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 273 (695)
.....+..... .++.+... +..................++++++++|||||||.||+
T Consensus 81 ~~~~~~~~~~~------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~ 137 (408)
T TIGR01733 81 ALASRLAGLVL------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKG 137 (408)
T ss_pred chhhhccccCC------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCE
Confidence 76554432211 11111110 00000000000011111357899999999999999999
Q ss_pred EEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecC----ChhhHHHHHHhcCCeEEee
Q 005468 274 AVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCS 349 (695)
Q Consensus 274 V~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~----~~~~l~~~i~~~~~t~~~~ 349 (695)
|.+||+++...+......+.+.++|++++.+|++|.+++...+.++..|+++++++. .+..+.+.++++++|.+.+
T Consensus 138 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~ 217 (408)
T TIGR01733 138 VVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNL 217 (408)
T ss_pred EEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEe
Confidence 999999999998888777888899999999999999999888999999999998773 2678889999999999999
Q ss_pred chHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHH
Q 005468 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429 (695)
Q Consensus 350 ~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~ 429 (695)
+|.+++.+.+... ...+++|.+++||+++++++.+
T Consensus 218 ~p~~~~~l~~~~~---------------------------------------------~~~~~l~~v~~~g~~~~~~~~~ 252 (408)
T TIGR01733 218 TPSLLALLAAALP---------------------------------------------PALASLRLVILGGEALTPALVD 252 (408)
T ss_pred CHHHHHHHHHhhh---------------------------------------------hcccCceEEEEeCccCCHHHHH
Confidence 9999999876321 0115899999999999999999
Q ss_pred HHHHHhC-CccccccccccccccccccCCCC---C--CCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCcc
Q 005468 430 FLKICFG-GRVTEGYGMTETSCLISQLDEGD---N--LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLI 503 (695)
Q Consensus 430 ~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~---~--~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v 503 (695)
++.+.++ +.+++.||+||++.++....... . ..+++|.|+++++++|+|++ +..++.|+ .|||+|+|+++
T Consensus 253 ~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~g~---~Gel~v~~~~~ 328 (408)
T TIGR01733 253 RWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGV---VGELYIGGPGV 328 (408)
T ss_pred HHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCC-CCCCCCCC---ceEEEecCccc
Confidence 9999997 89999999999987665322211 1 26789999999999999954 66777776 89999999999
Q ss_pred chhccCChhhhhcccCCC------C--eeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEE
Q 005468 504 FKGYYKDEIQTKEVIDED------G--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCF 575 (695)
Q Consensus 504 ~~gY~~~~~~t~~~~~~~------g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~ 575 (695)
+.||+++++.|.+.|..+ | ||+|||+|++|++|++++.||.||+|++ +|++|+|.+||+++..+|.|.+|+
T Consensus 329 ~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~ 407 (408)
T TIGR01733 329 ARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPGVREAV 407 (408)
T ss_pred cccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcchhhhc
Confidence 999999999999887433 3 9999999999999999999999999996 899999999999999999999987
Q ss_pred E
Q 005468 576 V 576 (695)
Q Consensus 576 V 576 (695)
|
T Consensus 408 v 408 (408)
T TIGR01733 408 V 408 (408)
T ss_pred C
Confidence 5
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=407.12 Aligned_cols=317 Identities=27% Similarity=0.308 Sum_probs=263.2
Q ss_pred CCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEec---
Q 005468 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ--- 329 (695)
Q Consensus 253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~--- 329 (695)
..++|+++++|||||||.||||+++|+++...+......+ ...++++..+|++|.+++...+.+++.|++++++.
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~ 109 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA 109 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence 4468999999999999999999999999988877654433 35678999999999999988888899999888732
Q ss_pred -CChhhHHHHHHhcC--CeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 005468 330 -GDNMKLMDDMAALR--PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406 (695)
Q Consensus 330 -~~~~~l~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~ 406 (695)
+++..+++.+++++ .++...+|..+..+......
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~------------------------------------------- 146 (358)
T PRK07824 110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA------------------------------------------- 146 (358)
T ss_pred CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-------------------------------------------
Confidence 68999999999998 56667788877655431000
Q ss_pred hhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCC
Q 005468 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTS 486 (695)
Q Consensus 407 ~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~ 486 (695)
.....++|.+++||+++++++.+++.+ +++++++.||+||++..+. ..|.|++++++++.+
T Consensus 147 ~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v~i~~-------- 207 (358)
T PRK07824 147 TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDGVRVRVED-------- 207 (358)
T ss_pred cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC----------cCceeCCCCEEEecC--------
Confidence 000148999999999999999999886 4999999999999875432 358999999999843
Q ss_pred CCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHh
Q 005468 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566 (695)
Q Consensus 487 ~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~ 566 (695)
|||+++|+.++.||+++++.+ .|..+|||+|||+|++ ++|.++++||.||+||+ +|++|+|.+||++|.
T Consensus 208 -------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~ 276 (358)
T PRK07824 208 -------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVLPQVVEAALA 276 (358)
T ss_pred -------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEECHHHHHHHHH
Confidence 999999999999999988754 4557899999999999 89999999999999997 899999999999999
Q ss_pred cCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceee
Q 005468 567 KCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVK 643 (695)
Q Consensus 567 ~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~ 643 (695)
+||+|.+|+|++.++ ++.++++|+.+++. +...++|+++++ +.|+.|++|.
T Consensus 277 ~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~-------------------------~~~~~~i~~~~~-~~l~~~~~P~ 330 (358)
T PRK07824 277 THPAVADCAVFGLPDDRLGQRVVAAVVGDGGP-------------------------APTLEALRAHVA-RTLDRTAAPR 330 (358)
T ss_pred hCCCcceEEEEecCCCCCceEEEEEEEeCCCC-------------------------CcCHHHHHHHHH-hhCccccCCC
Confidence 999999999999653 46788888765421 011445666665 6899999999
Q ss_pred EEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 644 AVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 644 ~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.|++++++| +|++||++|++|+++|.+
T Consensus 331 ~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 331 ELHVVDELP------RRGIGKVDRRALVRRFAG 357 (358)
T ss_pred EEEEecCCC------CCCCccccHHHHHHHhhc
Confidence 999999999 999999999999998865
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=384.61 Aligned_cols=410 Identities=20% Similarity=0.192 Sum_probs=336.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...++.+.|...+.+.|++.|+... + ..+||+|+..+++++|+.|.+.|+.+++.|+++.+.+++++++++
T Consensus 225 ~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l 295 (642)
T COG1020 225 LRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALL 295 (642)
T ss_pred ccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHH
Confidence 4478999999999999999888653 2 359999999999999999999999999999999988999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
|++++|+.++|+++.++.+++.+++++++++.+++......... ..+. +..+...
T Consensus 296 ~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~----------------- 350 (642)
T COG1020 296 AVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV----GLPG----LALDDAL----------------- 350 (642)
T ss_pred HHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc----cCCc----ccccccc-----------------
Confidence 99999999999999999999999999999999999833211100 0010 1111100
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (695)
.......+. .....+++.+|++|||||||.||||+++|+++...+.+....+.+...|+++...++.+.......+
T Consensus 351 ---~~~~~~~~~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f 426 (642)
T COG1020 351 ---SEIPDTDPI-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIF 426 (642)
T ss_pred ---ccCCccCcc-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHH
Confidence 000000000 1223568999999999999999999999999999887777778999999999999999999989999
Q ss_pred HHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 317 MTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 317 ~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
.++..|+++++.. .++..+.+.+.++++|++..+|.++..+........ .
T Consensus 427 ~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~--------------------------~ 480 (642)
T COG1020 427 GALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD--------------------------L 480 (642)
T ss_pred HHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc--------------------------c
Confidence 9999999999877 589999999999999999999999988865300000 0
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh--CCccccccccccccccccccCCCCCC--CCCcCCC
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDEGDNL--SGHVGSP 468 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~--~~~vG~p 468 (695)
. .....+|.+++||+.++..+...+.... ...+.+.||+||+............. ..++|.|
T Consensus 481 ~--------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p 546 (642)
T COG1020 481 I--------------SPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRP 546 (642)
T ss_pred c--------------CCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCccee
Confidence 0 0002489999999999999999887765 36799999999976554433322222 4589999
Q ss_pred ccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCee
Q 005468 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIF 548 (695)
Q Consensus 469 ~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~i 548 (695)
++++.+.|+| .....++.+. .|||++.|.++.+||+++|+.|.+.|..+.+|+|||++++++||.+.++||.|+++
T Consensus 547 ~~n~~~~ild-~~~~~~p~gv---~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qv 622 (642)
T COG1020 547 VANTQLYILD-QGLRPLPLGV---PGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQV 622 (642)
T ss_pred eCCCeEEEEC-CCCCcCCCCC---CeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEecccccee
Confidence 9999999999 6677777776 79999999999999999999999999554699999999999999999999999999
Q ss_pred ecCCeeeechHHHHHHHhcCc
Q 005468 549 KLAQGEYIAAEKIENVYAKCK 569 (695)
Q Consensus 549 kl~~G~~v~p~~IE~~l~~~p 569 (695)
|+ +|++|.+.|||..+.++|
T Consensus 623 ki-~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 623 KI-RGFRIELGEIEAALAEQP 642 (642)
T ss_pred Ee-ceEecCcHHHHHHHhcCC
Confidence 98 899999999999998875
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=343.68 Aligned_cols=287 Identities=19% Similarity=0.143 Sum_probs=226.1
Q ss_pred CCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccC--CCcEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec-CC
Q 005468 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY--PSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GD 331 (695)
Q Consensus 256 ~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~-~~ 331 (695)
+..++++|||||||.||||++||+++.+.+......+++. +.|++++.+|++|.+++.. .+.++..|+++++.. ++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 4578999999999999999999999998887666655554 3468999999999999865 566888999998866 67
Q ss_pred hhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCC
Q 005468 332 NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411 (695)
Q Consensus 332 ~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~ 411 (695)
+..+++.++.. |+++++|++++.+.+.. ...+
T Consensus 175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----------------------------------------------~~l~ 206 (386)
T TIGR02372 175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----------------------------------------------YRLP 206 (386)
T ss_pred hHHHHHhhccC--CEEEECcHHHHHHHhhC----------------------------------------------cCCC
Confidence 77888877643 89999999998876420 0003
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHhCC-ccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCC
Q 005468 412 RVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (695)
Q Consensus 412 ~lr~i~~gG~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~ 490 (695)
+++. ++||+++++++.+.+++. +. .++++||+||++++++... ++..|.|+|++++++ + + +
T Consensus 207 slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~~~~-~--~------~-- 268 (386)
T TIGR02372 207 GVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLACFA-D--T------L-- 268 (386)
T ss_pred ccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcccCCCccccC-C--C------c--
Confidence 5665 678999999999999885 64 6999999999987554322 234567888776543 1 1 0
Q ss_pred CCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcC
Q 005468 491 CPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKF 570 (695)
Q Consensus 491 ~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~ 570 (695)
.+ .|+ ..|++|||+|+||++|+++|+||+||+||+ +|++|+|.+||+++.+||.
T Consensus 269 ---~~---~g~-------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~ 322 (386)
T TIGR02372 269 ---SS---AGL-------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRDILERNPR 322 (386)
T ss_pred ---cC---CCc-------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHHHHHcCCC
Confidence 00 021 236899999999999999999999999997 8999999999999999999
Q ss_pred cceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeec
Q 005468 571 VGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLE 650 (695)
Q Consensus 571 V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~ 650 (695)
|.+|+|+. .++.+.|+|+++++. + .+.+.++|+++++ ++|+.|++|..|.++++
T Consensus 323 V~~~~v~~--~g~~~~a~vv~~~~~--------------------~---~~~~~~~l~~~~~-~~L~~~~~P~~i~~~~~ 376 (386)
T TIGR02372 323 VRAAAVRL--DGRRLKAFIVVAEDA--------------------D---EAELEIELRATAA-RHLPAPARPDRFRFGTE 376 (386)
T ss_pred ceEEEEEc--CCceEEEEEEECCCC--------------------C---hHHHHHHHHHHHH-HhCCCCCCCcEEEEccc
Confidence 99999974 356889999987531 0 0123456777776 68999999999999999
Q ss_pred CCCCCCCccCccccCC
Q 005468 651 PFTVENGLLTPTFKIK 666 (695)
Q Consensus 651 ~p~~~~~~~t~~gKi~ 666 (695)
+| +|++||++
T Consensus 377 lP------~t~~GKi~ 386 (386)
T TIGR02372 377 LP------RTGAGKLA 386 (386)
T ss_pred CC------CCCCCCcC
Confidence 99 99999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=315.39 Aligned_cols=328 Identities=15% Similarity=0.160 Sum_probs=233.5
Q ss_pred CCCCcEEEEeccCCCCCCceEEechHHHHHHHHhh---ccccccCCCcEEEEeCChhhHHH-HHHHHHHHHcCcEEeEec
Q 005468 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISYLPLAHIYE-RANQVMTVYSGVAVGFYQ 329 (695)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~~-~~~~~~~l~~G~~~~~~~ 329 (695)
..+++++++|||||||.||+|.+||.++....... ....++.++|++++..+..+..+ +...+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 45678899999999999999999999986654332 23357889999988766544333 233455678898887665
Q ss_pred -CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 005468 330 -GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408 (695)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~ 408 (695)
.++..+++.|++++||+++++|+++..|++..... +..+
T Consensus 153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~-------------------------~~~~--------------- 192 (422)
T TIGR02155 153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRM-------------------------GIDP--------------- 192 (422)
T ss_pred CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHc-------------------------CCCc---------------
Confidence 67899999999999999999999999887643211 0000
Q ss_pred cCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCc--cCcEEEEeecCCCCCCC
Q 005468 409 LGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN--AACEIKLVDVPEMNYTS 486 (695)
Q Consensus 409 ~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~~v~i~d~~~~~~~~ 486 (695)
...++|.+++||+++++++.+.+++.||+++++.||+||+++.......... ..|.++ +++.++|+|++++..++
T Consensus 193 ~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~~---~~g~~~~~~~~~~eivd~~~g~~v~ 269 (422)
T TIGR02155 193 AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVET---QDGLHIWEDHFYPEIIDPHTGEVLP 269 (422)
T ss_pred ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeeccccc---CCCceEecCeeEEEEECCCCCCCCC
Confidence 0037999999999999999999999999999999999998532111111111 123333 35778899976777777
Q ss_pred CCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC-C-----cEEEEecCCCeeecCCeeeechHH
Q 005468 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-G-----RLKIIDRKKNIFKLAQGEYIAAEK 560 (695)
Q Consensus 487 ~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G-----~l~i~GR~~d~ikl~~G~~v~p~~ 560 (695)
.|+ .|||++++. +++.| ..+||+|||+|+++++ | .++|.||.||+||+ +|++|+|.+
T Consensus 270 ~Ge---~Gelvvt~~------------~~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~~v~p~e 332 (422)
T TIGR02155 270 DGE---EGELVFTTL------------TKEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGVNVFPTQ 332 (422)
T ss_pred CCC---eeEEEEecC------------Ccccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCEEECHHH
Confidence 776 899999973 33445 5789999999999876 4 47899999999997 799999999
Q ss_pred HHHHHhcCcCcceEEEEe-eCC--CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCC
Q 005468 561 IENVYAKCKFVGQCFVYG-DSF--NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLR 637 (695)
Q Consensus 561 IE~~l~~~p~V~~~~V~g-~~~--~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~ 637 (695)
||+++.+||+|...+++. ... .+.+++.|++.++.. .. ...+....+.++|.+.++ ..+.
T Consensus 333 ie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~--------~~--------~~~~~~~~~~~~i~~~~~-~~~~ 395 (422)
T TIGR02155 333 LEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESY--------TL--------RLHEQASLLAGEIQHTIK-QEVG 395 (422)
T ss_pred HHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcc--------cc--------cchHHHHHHHHHHHHHHH-hccC
Confidence 999999999998444333 222 236666666654220 00 001112334555666665 4555
Q ss_pred CcceeeEEEEe--ecCCCCCCCccCccccCChH
Q 005468 638 GFEFVKAVTLV--LEPFTVENGLLTPTFKIKRP 668 (695)
Q Consensus 638 ~~~~p~~i~~~--~~~p~~~~~~~t~~gKi~R~ 668 (695)
.+. .|.++ +++| +|+ ||++|.
T Consensus 396 ~~~---~v~~~~~~~lp------~~~-GK~~~~ 418 (422)
T TIGR02155 396 VSM---DVHLVEPGSLP------RSE-GKARRV 418 (422)
T ss_pred cEE---EEEEECCCCcc------CCC-CCceEE
Confidence 542 35555 5898 888 999874
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-29 Score=270.85 Aligned_cols=514 Identities=16% Similarity=0.153 Sum_probs=350.9
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChhHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
.++.|+|+++++++||.+|+... ++.......+||++|..+|.+++.+|+.. -+++||.|+++++++.|++++++|
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~ 846 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA 846 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence 68999999999999999999987 77767778899999999999999999976 579999999999999999999999
Q ss_pred HHhcCCeEEeccCCC------CHHHHHHHHHhccccEEEecccchhHHHhcccC----CCCceEEEEECCCCCCCCCCCc
Q 005468 158 CSAYSFISVPLYDTL------GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE----VPTVRLIVVIGGIDDQIPSLPI 227 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~------~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~----~~~l~~ii~~~~~~~~~~~~~~ 227 (695)
|+.+|.+++|+.|.- .-..+..+++..++.+|+++......+...-.. ...+..++.+++.....
T Consensus 847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~----- 921 (1363)
T KOG3628|consen 847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETI----- 921 (1363)
T ss_pred HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhh-----
Confidence 999999999998764 234788999999999999997655444322110 01111222222211000
Q ss_pred CCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChh
Q 005468 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLA 307 (695)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~ 307 (695)
......+.+. ....++...+++.+|++-+.--++|.--|+.+||.++++.++...+...+.+..-++...+.+
T Consensus 922 -----~k~~~~~~k~--~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~ 994 (1363)
T KOG3628|consen 922 -----RKRKKNIKKL--NTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPY 994 (1363)
T ss_pred -----hhhhhhhhcc--CCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCc
Confidence 0001111111 111223334678899999998999999999999999999999999988888888888888888
Q ss_pred hHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 005468 308 HIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYN 381 (695)
Q Consensus 308 h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 381 (695)
...|+.. +++..+.|....+++ .++..|+..|+++++.-++.+-..++.+.+.+..+.... +.
T Consensus 995 sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl---~~-------- 1063 (1363)
T KOG3628|consen 995 SGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENL---SK-------- 1063 (1363)
T ss_pred cchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchh---hh--------
Confidence 8888876 667899999877766 589999999999999988888877777665432221110 00
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh---CC---cccccccccccccccccc
Q 005468 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---GG---RVTEGYGMTETSCLISQL 455 (695)
Q Consensus 382 ~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~---g~---~v~~~YG~TE~~~~~~~~ 455 (695)
.|.+ + ++ ..++..-+.....+.+-|.+.| |. .+--.|+.-=.-.++...
T Consensus 1064 -------~gnn----------------~-s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~ 1118 (1363)
T KOG3628|consen 1064 -------RGNN----------------T-SS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRS 1118 (1363)
T ss_pred -------hhcc----------------c-cc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhcc
Confidence 0000 0 01 2233333333344444443333 21 122222221111111110
Q ss_pred C---------------------------CCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhcc
Q 005468 456 D---------------------------EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYY 508 (695)
Q Consensus 456 ~---------------------------~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~ 508 (695)
. +......-.|...+++++.|+++++...+.+|+ .||||+.|..-+.+|+
T Consensus 1119 ~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge---~GEIW~~S~hnA~~~~ 1195 (1363)
T KOG3628|consen 1119 YSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGE---LGEIWVNSAHNASCSF 1195 (1363)
T ss_pred ccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCC---cceEEecccccccccc
Confidence 0 000111224888899999999999999998887 9999999998888887
Q ss_pred CChh-hhhccc---------CCCCeeecccEEEEec------C----CcEEEEecCCCeeecCCeeeechHHHHHHH-hc
Q 005468 509 KDEI-QTKEVI---------DEDGWFHTGDIGMWIP------G----GRLKIIDRKKNIFKLAQGEYIAAEKIENVY-AK 567 (695)
Q Consensus 509 ~~~~-~t~~~~---------~~~gw~~TGDlg~~~~------d----G~l~i~GR~~d~ikl~~G~~v~p~~IE~~l-~~ 567 (695)
+-.+ .....| ...+|.||||+|++.. + .-||++|-.++.+.+ +|.+.+|.+||..+ +.
T Consensus 1196 ~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~v 1274 (1363)
T KOG3628|consen 1196 TIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERV 1274 (1363)
T ss_pred ccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHh
Confidence 6311 111112 2456999999999842 2 249999999999998 89999999999999 67
Q ss_pred CcCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceee-EEE
Q 005468 568 CKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVK-AVT 646 (695)
Q Consensus 568 ~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~i~ 646 (695)
||.|..|+|+.. ...+|.++....+. + ..+|.....+.-|..+.++. -+.
T Consensus 1275 H~~I~~cavF~~--~glvVvviE~~gq~----------------------~-----~~~LvPlIv~~vL~eH~iI~dvV~ 1325 (1363)
T KOG3628|consen 1275 HPSIGGCAVFQA--TGLVVVVIECHGQQ----------------------E-----LADLVPLIVNVVLEEHYIILDVVA 1325 (1363)
T ss_pred cccccceeeEee--CCeEEEEEEecCch----------------------h-----HhhhhHHHHHHHHhhcceEEEEEE
Confidence 999999999975 34566666655421 1 11111211122344444444 455
Q ss_pred Eeec--CCCCCCCccCccccCChHHHHHHHHH-HHHHHH
Q 005468 647 LVLE--PFTVENGLLTPTFKIKRPQAKQYFAK-AIADMY 682 (695)
Q Consensus 647 ~~~~--~p~~~~~~~t~~gKi~R~~l~~~~~~-~i~~ly 682 (695)
+++. +| +++.|--+|..+++.|-+ +++-+|
T Consensus 1326 fV~~G~~p------~~~~gEK~R~~I~~~w~~~kL~~~~ 1358 (1363)
T KOG3628|consen 1326 FVDKGVFP------RNSRGEKQRAHILDSWLAGKLDPIY 1358 (1363)
T ss_pred EecCCccc------cCCchhhHHHHHHHHHHhcccceee
Confidence 6654 55 999999999999987764 344443
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=289.57 Aligned_cols=504 Identities=15% Similarity=0.114 Sum_probs=325.3
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
+.++.+.|.+.+..+|.+.+..+.+. ....+....+||++....++.+++.|...|...|+.|++++..+.++++..++
T Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~ 113 (1032)
T KOG1178|consen 35 MGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA 113 (1032)
T ss_pred hcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence 46888899999999999999887643 22334456689999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCC----HHHHHHHH---HhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCC
Q 005468 158 CSAYSFISVPLYDTLG----PDAVKYIV---NHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~----~~~l~~il---~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 230 (695)
++++|..+++++|.++ ++.+..+. ......+ ..... .+... +.+-. ....
T Consensus 114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i--~~~l~--i~~~~-----------~~~~~--------~~~s 170 (1032)
T KOG1178|consen 114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEI--VRRLN--IIDIL-----------LNSLF--------PKLS 170 (1032)
T ss_pred hhhcceEEEEecCCCcccccchHHHhhhhhheecccee--hhhhh--hHHHH-----------hhccc--------cccc
Confidence 9999999999999999 33222111 1111111 00000 00000 00000 0000
Q ss_pred ce--EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCCh-h
Q 005468 231 VQ--ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL-A 307 (695)
Q Consensus 231 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl-~ 307 (695)
+. .-.|..+..... .......-++..+++.||||+||.||+|.-+|..+.....+....+.+...+++-....+ +
T Consensus 171 v~~~~~~f~~~~~~~~--~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~ 248 (1032)
T KOG1178|consen 171 VETIADSFQMVLHNED--TREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYF 248 (1032)
T ss_pred hhhccchhhhhhccCC--CcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeec
Confidence 00 011111111110 112223456789999999999999999999999999999988888888877775222222 2
Q ss_pred hHHHHHHHHHHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 005468 308 HIYERANQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (695)
Q Consensus 308 h~~~~~~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k 383 (695)
+..-.......|+.|..+..+. ..+..+.+.+++++++....+|++.+.++.........
T Consensus 249 ~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~---------------- 312 (1032)
T KOG1178|consen 249 DDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPL---------------- 312 (1032)
T ss_pred ccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhh----------------
Confidence 3222223344556666555443 34789999999999999999999988887632111000
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCCCCCCC
Q 005468 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLS 462 (695)
Q Consensus 384 ~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~~~~ 462 (695)
+..... ..++.. .-+.|+..+.+|++....+...+...+- .-...-|+.|+..+.++......
T Consensus 313 ---l~~~~~---------~~dl~~-~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~--- 376 (1032)
T KOG1178|consen 313 ---LEHAFS---------LSDLLT-KRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSP--- 376 (1032)
T ss_pred ---hhhhhh---------cccccc-cchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCc---
Confidence 000000 000000 0048999999999999998885544431 11223388888766554332211
Q ss_pred CCcCCCccCcEEEEeecCCC---------CCCCCCCCCC-------cceEEEeCCccchhccCChhhhhccc-----CCC
Q 005468 463 GHVGSPNAACEIKLVDVPEM---------NYTSEDQPCP-------RGEICVRGPLIFKGYYKDEIQTKEVI-----DED 521 (695)
Q Consensus 463 ~~vG~p~~~~~v~i~d~~~~---------~~~~~~~~~~-------~GEl~v~g~~v~~gY~~~~~~t~~~~-----~~~ 521 (695)
.+.-+-...+.++..... .+...+.+++ .|+-+..+..+..| +..++.....+ ..+
T Consensus 377 --s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~ 453 (1032)
T KOG1178|consen 377 --SKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKA 453 (1032)
T ss_pred --ccceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchh
Confidence 111111111111111000 0001111000 12222223333444 34444433322 134
Q ss_pred CeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHH
Q 005468 522 GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKA 598 (695)
Q Consensus 522 gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~ 598 (695)
..|+|||.|+..++|.+.+.||.|++||+ +|.++...+|+..+..||.|.++++....+ ++.++|||++..+.
T Consensus 454 r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~--- 529 (1032)
T KOG1178|consen 454 RIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGS--- 529 (1032)
T ss_pred hcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCC---
Confidence 48999999999999999999999999998 899999999999999999999999887443 46799999987632
Q ss_pred HHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHH
Q 005468 599 WAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYF 674 (695)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~ 674 (695)
. . .....|+.+++ ..|+.|++|..++.++++| +|++||||+++|.+.+
T Consensus 530 -------~----------~----~~~~~i~~~l~-~~La~y~vPs~~V~l~~vP------l~~~GKvDkkaL~~~~ 577 (1032)
T KOG1178|consen 530 -------K----------S----VLIRDIRNYLK-KELASYMLPSLVVPLAKVP------LNPNGKVDKKALLEYN 577 (1032)
T ss_pred -------C----------c----hhHHHHHHhhc-ccccceecceEEEEhhhCC------cCCCCCcChhhhhhhh
Confidence 1 1 11677888886 8999999999999999999 9999999999999833
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=244.17 Aligned_cols=258 Identities=17% Similarity=0.178 Sum_probs=186.9
Q ss_pred CCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc---ccccCCCcEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec
Q 005468 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ 329 (695)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~ 329 (695)
..++++.+.|||||||.||+|.+||.++......... ..++.++|+++...|..+..+... .+.++..|++++. .
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~-~ 162 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP-E 162 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc-C
Confidence 4568899999999999999999999998766544332 247889999999999887666544 3456778887653 3
Q ss_pred CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhc
Q 005468 330 GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409 (695)
Q Consensus 330 ~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~ 409 (695)
+.....++.|+++++|.++++|+.+..+++.+... +..+ .
T Consensus 163 ~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~-------------------------g~~~---------------~ 202 (445)
T TIGR03335 163 GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAE-------------------------GIDP---------------A 202 (445)
T ss_pred CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHc-------------------------CCCc---------------c
Confidence 34456788999999999999999887776532211 0000 0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCc--cCcEEEEeecCCCCCCCC
Q 005468 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN--AACEIKLVDVPEMNYTSE 487 (695)
Q Consensus 410 g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~~v~i~d~~~~~~~~~ 487 (695)
..++|.+++||++++++..+.+.+.||+++++.||+||++.. ..+.. ..|..+ +.+.++|+|++++..++.
T Consensus 203 ~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~-~~c~~------~~g~h~~~d~~~vEIvDp~~~~~vp~ 275 (445)
T TIGR03335 203 ESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMC-GECQA------VAGLHVPEDLVHLDVYDPRHQRFLPD 275 (445)
T ss_pred cCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhhe-EEecC------CCCccccCCceEEEEEcCCCCCCCcC
Confidence 037999999999999999999999999999999999998632 21111 123333 457889999766666777
Q ss_pred CCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEec-C----Cc----EEEEecCCCeeecCCeeeech
Q 005468 488 DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP-G----GR----LKIIDRKKNIFKLAQGEYIAA 558 (695)
Q Consensus 488 ~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~-d----G~----l~i~GR~~d~ikl~~G~~v~p 558 (695)
|+ .|||++++-.-. .+++.+ .==-|+|||++++.. + |+ +..+||.||++++ +|.+|+|
T Consensus 276 Ge---~GELvvT~L~~~--------~~r~~~-PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g~~~~p 342 (445)
T TIGR03335 276 GE---CGRIVLTTLLKP--------GERCGS-LLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SGVPFNR 342 (445)
T ss_pred CC---ceEEEEEecCCC--------CccCCc-eEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CCEEeCH
Confidence 76 899999874210 000000 000289999999732 2 32 4457999999999 8999999
Q ss_pred HHHHHHHhcC---cCcc
Q 005468 559 EKIENVYAKC---KFVG 572 (695)
Q Consensus 559 ~~IE~~l~~~---p~V~ 572 (695)
.+||++|.++ +++.
T Consensus 343 ~~ie~~l~~~~~~~~~~ 359 (445)
T TIGR03335 343 VDVERAVFQRENMDSLT 359 (445)
T ss_pred HHHHHHHhccCCCCCCC
Confidence 9999999995 5553
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=218.97 Aligned_cols=223 Identities=13% Similarity=0.050 Sum_probs=164.8
Q ss_pred HHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHHHHhcCC
Q 005468 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163 (695)
Q Consensus 85 l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~ 163 (695)
+...++++|+++|+.+. +...++.+.+||+||.+++.++|++|++ +|+++||+|+|+++|+++++++++||+++|+
T Consensus 2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46678899999999754 2211123569999999999999999998 7999999999999999999999999999999
Q ss_pred eEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcc
Q 005468 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQG 243 (695)
Q Consensus 164 v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (695)
+++|++ ++++++++++.+....+. .+ +.++.+........... .......+|.+.+...
T Consensus 79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 137 (227)
T TIGR03089 79 EVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRRVAG-ELPPGVIDFAPEVRVH 137 (227)
T ss_pred EEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccCCCC-CCCCcccchhhhhhcc
Confidence 999995 789999999987766642 11 22333321000000000 0011224666655432
Q ss_pred ccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-HHHHHHcC
Q 005468 244 RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSG 322 (695)
Q Consensus 244 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G 322 (695)
.....+.....++|++.|+||||| +|++++.+. ...++.++|+++ .+|++|++|+.. ++.+++.|
T Consensus 138 ~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G 203 (227)
T TIGR03089 138 GDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAG 203 (227)
T ss_pred CCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccC
Confidence 222222213467999999999986 666665554 346788999999 999999999976 66789999
Q ss_pred cEEeEec-CChhhHHHHHHhcCCe
Q 005468 323 VAVGFYQ-GDNMKLMDDMAALRPT 345 (695)
Q Consensus 323 ~~~~~~~-~~~~~l~~~i~~~~~t 345 (695)
+++++++ +++..+++.|+++|+|
T Consensus 204 ~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 204 GSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred ceEEEecCCCHHHHHHHHHhhcCC
Confidence 9999888 8999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-22 Score=202.76 Aligned_cols=280 Identities=19% Similarity=0.191 Sum_probs=203.9
Q ss_pred CCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc---ccccCCCcEEEEeCChh-hHHHHHHHHHHHHcCcEEeEe
Q 005468 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLA-HIYERANQVMTVYSGVAVGFY 328 (695)
Q Consensus 253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~-h~~~~~~~~~~l~~G~~~~~~ 328 (695)
...++...|--||||||.|+-+.+|+..+......+.. ..+...+|++....-.. +..|+...+.+--.|++++=.
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 34567777899999999999999999886555444433 35677888766544311 111223334444466665433
Q ss_pred c-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 005468 329 Q-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407 (695)
Q Consensus 329 ~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~ 407 (695)
. ++...-++.++.++||++.++|+.+..|++.+.... ..+ +.
T Consensus 167 ~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G-------------------------~~~----~~-------- 209 (438)
T COG1541 167 SGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEG-------------------------IDP----DK-------- 209 (438)
T ss_pred CCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcC-------------------------CCh----hh--------
Confidence 3 588999999999999999999999999988654331 111 11
Q ss_pred hcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccc-cccCCCCCCCCCcCCCccCcEEEEeecCCCCCCC
Q 005468 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI-SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTS 486 (695)
Q Consensus 408 ~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~-~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~ 486 (695)
.++|.+++|+|+++++..+.+.+.||+.+++.||+||..+.. ..+.... ..-..-...-+.|+|+.++.+++
T Consensus 210 ---~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~----glhi~eD~~~~Ei~dP~t~e~l~ 282 (438)
T COG1541 210 ---LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN----GLHIWEDHFIFEIVDPETGEQLP 282 (438)
T ss_pred ---cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc----CCCcchhhceeeeecCCcCccCC
Confidence 389999999999999999999999999999999999986653 1111111 01112356788999999999999
Q ss_pred CCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC----Cc-----EEEEecCCCeeecCCeeeec
Q 005468 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GR-----LKIIDRKKNIFKLAQGEYIA 557 (695)
Q Consensus 487 ~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~-----l~i~GR~~d~ikl~~G~~v~ 557 (695)
+|+ .|||.++.-. ++.+ .==-|+|||++.+.++ |+ ..|.||.||++++ .|.+|+
T Consensus 283 dge---~GelV~T~L~------------~~~~-PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~G~~vf 345 (438)
T COG1541 283 DGE---RGELVITTLT------------KEGM-PLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-RGVNVF 345 (438)
T ss_pred CCC---eeEEEEEecc------------ccCc-ceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-CCEEeC
Confidence 997 8999988632 1111 1113899999999864 33 5689999999998 799999
Q ss_pred hHHHHHHHhcCcCcc---eEEEEeeCCCCeEEEEEEeCH
Q 005468 558 AEKIENVYAKCKFVG---QCFVYGDSFNSALVAIVSVDQ 593 (695)
Q Consensus 558 p~~IE~~l~~~p~V~---~~~V~g~~~~~~~va~vv~~~ 593 (695)
|..||.++.+.+.+. ++++........+..-|+..+
T Consensus 346 p~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~ 384 (438)
T COG1541 346 PSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELEN 384 (438)
T ss_pred HHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecC
Confidence 999999999999999 677777444566766666654
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-20 Score=188.75 Aligned_cols=113 Identities=13% Similarity=0.038 Sum_probs=99.4
Q ss_pred CCCeeecccEEEE-ecCCcEEEEecCCCeeecCCe---eeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeC
Q 005468 520 EDGWFHTGDIGMW-IPGGRLKIIDRKKNIFKLAQG---EYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVD 592 (695)
Q Consensus 520 ~~gw~~TGDlg~~-~~dG~l~i~GR~~d~ikl~~G---~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~ 592 (695)
.||||+|||+|++ |+||+|+|+||.| +| ++|+|+ ||++|.+||+|.+|+|+|.++ ++.++|+|++.
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~ 279 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE 279 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence 7899999999998 6999999999998 67 899999 999999999999999999654 56899999976
Q ss_pred HHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 593 QDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
.. +. .++|+++++ ++|+. ++|+.|.+++++| +|++||++|++|++
T Consensus 280 ~~----------~~-----------------~~el~~~l~-~~L~~-kvP~~v~~v~~lP------~t~~GKi~R~~Lr~ 324 (365)
T PRK09188 280 LP----------AD-----------------EKSLRARLA-GAKPP-KPPEHIQPVAALP------RDADGTVRDDILRL 324 (365)
T ss_pred CC----------CC-----------------HHHHHHHHH-hhchh-cCCcEEEEECCCC------CCCCCCccHHHHHH
Confidence 31 11 356777776 78999 9999999999999 99999999999998
Q ss_pred HH
Q 005468 673 YF 674 (695)
Q Consensus 673 ~~ 674 (695)
..
T Consensus 325 ~~ 326 (365)
T PRK09188 325 IA 326 (365)
T ss_pred Hh
Confidence 76
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.5e-18 Score=184.28 Aligned_cols=510 Identities=16% Similarity=0.120 Sum_probs=329.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEccCC--hhHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS-GLIYHGISKGSCIGLYFVNR--PEWL 152 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~-~L~~~gv~~gd~V~i~~~n~--~e~~ 152 (695)
..+..+..+++++-.+++..+|.++. |.+.. ...+||..+..++.++|+ .|.+.|+.++|+|.++...+ .|++
T Consensus 91 ~a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~ 166 (1363)
T KOG3628|consen 91 MALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFL 166 (1363)
T ss_pred hhhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHh
Confidence 35567788888888889999999887 66544 788999999999999999 67778999999999999777 7999
Q ss_pred HHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCce
Q 005468 153 IVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 153 ~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
+..++|...|.+++|+.+..+-+++..+++....+++++.......+..........+.+ .+......+
T Consensus 167 isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v-----------~~w~t~~~k 235 (1363)
T KOG3628|consen 167 ISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAV-----------AWWKTNDFK 235 (1363)
T ss_pred hhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHH-----------Hhhhccccc
Confidence 999999999999999999999999999999999999999876655443322110000000 000000000
Q ss_pred -EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc--------------------c
Q 005468 233 -ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------------------G 291 (695)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~--------------------~ 291 (695)
.+.++. ...+...-. ..+|-||++++|.--|++.+|+ ++.+.+.+.. .
T Consensus 236 ~~~~~~k---------~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v 304 (1363)
T KOG3628|consen 236 GNYTKDK---------IKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHV 304 (1363)
T ss_pred ceeehhh---------ccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhc
Confidence 111111 011111222 8899999999999999999998 5444333211 1
Q ss_pred cccCCCcEEEEeCChhhHHHHHH-HHHHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHh
Q 005468 292 TKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVR 366 (695)
Q Consensus 292 ~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 366 (695)
++....+.++..+......|++. .+.++++|.+....+ ..+..+...+.++|.+++..--..+........+
T Consensus 305 ~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~--- 381 (1363)
T KOG3628|consen 305 FPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQE--- 381 (1363)
T ss_pred cccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccC---
Confidence 33455677777777777777776 667899998887766 4677888888999999887765444433221111
Q ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh----CCc-c--
Q 005468 367 TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF----GGR-V-- 439 (695)
Q Consensus 367 ~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~----g~~-v-- 439 (695)
++. ..+.|.+-+....+++|.+.+.-..+..+..+...+++ |.. +
T Consensus 382 -------------------------~p~---a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~ 433 (1363)
T KOG3628|consen 382 -------------------------DPK---ATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKV 433 (1363)
T ss_pred -------------------------Ccc---cccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcce
Confidence 000 01112233333347999999988888888666544432 321 1
Q ss_pred ---------------ccccccccccccccccCCCC------------------------------CCCCCcCCCccC-cE
Q 005468 440 ---------------TEGYGMTETSCLISQLDEGD------------------------------NLSGHVGSPNAA-CE 473 (695)
Q Consensus 440 ---------------~~~YG~TE~~~~~~~~~~~~------------------------------~~~~~vG~p~~~-~~ 473 (695)
...=++.|.+......+... .....+|...|+ +.
T Consensus 434 ~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t 513 (1363)
T KOG3628|consen 434 VDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDAT 513 (1363)
T ss_pred eechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceE
Confidence 11112345443322221100 012235555554 56
Q ss_pred EEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC------------CCCeeecccEEEEecCCcEEEE
Q 005468 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------------EDGWFHTGDIGMWIPGGRLKII 541 (695)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~------------~~gw~~TGDlg~~~~dG~l~i~ 541 (695)
+.+++++....|..++ +|||||.++++..+||.-+..|...|. ...|.|||=+|++. +|.++++
T Consensus 514 ~~vv~~~t~~LC~~~e---VGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl 589 (1363)
T KOG3628|consen 514 LAVVNPDTNQLCKTDE---VGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVL 589 (1363)
T ss_pred EEEeCCCcccccccCc---ceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEE
Confidence 6778877777777776 999999999999999998877776661 22389999999996 5556666
Q ss_pred ecCCCeeecCCeeeechHH----------HHHHHhcCcCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCCcccHH
Q 005468 542 DRKKNIFKLAQGEYIAAEK----------IENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLE 611 (695)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~----------IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~ 611 (695)
|-++|++---.|.+++..+ |+-+++..+.|-++.++- .++++.+++-.+...+ +
T Consensus 590 ~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---~E~~~Vv~~esP~a~e----~--------- 653 (1363)
T KOG3628|consen 590 GLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---DEHIVVVVLESPDATE----E--------- 653 (1363)
T ss_pred EechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---cceEEEEEEeCcchhh----h---------
Confidence 6555554333566665433 556667778888888876 4555555555554311 0
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 612 QLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 612 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
+.-+....+.+.|... .++..|-+ .+.--+.+| +|+-|-|.-.+.++.|.+
T Consensus 654 ---~~~q~~~~v~q~l~~i---Hqv~vyCi--livP~~tLP------rt~~~Gi~~~~~k~~F~~ 704 (1363)
T KOG3628|consen 654 ---NSFQWMSRVFQALDSI---HQVGVYCI--LIVPANTLP------RTPLGGIHNNECKQAFLE 704 (1363)
T ss_pred ---hhhhHHHHHHHHHHHH---hcccceEE--EEeccccCC------CccccccccHHHHHHHHc
Confidence 0112222333333333 44555433 233335688 999999999999999875
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-15 Score=155.26 Aligned_cols=258 Identities=17% Similarity=0.240 Sum_probs=160.6
Q ss_pred cEEEEeccCCCCCCceEEechHHHHHHHHhhc---cccccCCCcEEEEeCC-hhhHHHHHHHHHHHHc-CcEEeEec--C
Q 005468 258 VATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLP-LAHIYERANQVMTVYS-GVAVGFYQ--G 330 (695)
Q Consensus 258 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p-l~h~~~~~~~~~~l~~-G~~~~~~~--~ 330 (695)
-..+..||||||.|-.+..+............ ...++..++++...+. -.+.+. .+.. ...+.+++ .
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~------~~~~~~~~~~~~~l~~ 174 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQ------SVNNRWISLDFFDLLA 174 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHH------HHHhccceeeecCCCc
Confidence 34577799999999999999886543322211 1134555565554421 112221 1111 11123333 5
Q ss_pred ChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcC
Q 005468 331 DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410 (695)
Q Consensus 331 ~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g 410 (695)
+...+++.|++++||++.+.|+.+..|++.+..... .
T Consensus 175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l-------------------------------------------~ 211 (430)
T TIGR02304 175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL-------------------------------------------T 211 (430)
T ss_pred CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC-------------------------------------------C
Confidence 788899999999999999999999999875332100 0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCC
Q 005468 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (695)
Q Consensus 411 ~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~ 490 (695)
.+++.++++||+++++..+.+++.||++|++.||+|| |.+++.+..+. -++-...--+|..++|++ +
T Consensus 212 ~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~---lHl~ed~~~vE~~ivD~~-------~-- 278 (430)
T TIGR02304 212 IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT---LHLNEDLVHIEKQYLDEH-------K-- 278 (430)
T ss_pred CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC---EEEccccEEEEeeEECCC-------C--
Confidence 2689999999999999999999999999999999999 54433332111 111111112333466621 1
Q ss_pred CCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC----Cc----E-EEEecCCCeeec--CCeee--ec
Q 005468 491 CPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GR----L-KIIDRKKNIFKL--AQGEY--IA 557 (695)
Q Consensus 491 ~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~----l-~i~GR~~d~ikl--~~G~~--v~ 557 (695)
.++.+|++ +.+. +...+ -|+|||++.+.++ |. + .|.||.+|++++ .+|.. |+
T Consensus 279 --~~~~ViT~------L~n~---~~PlI----RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~ 343 (430)
T TIGR02304 279 --RFVPIITD------FTRT---TQPIV----RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVF 343 (430)
T ss_pred --ceEEEEec------CCCc---cceEE----eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeC
Confidence 23444433 2221 01111 2899999988544 32 3 388999999985 35555 59
Q ss_pred hHHHHHHH-hcCcCcceEEEEeeCCCCeEEEEEEeCH
Q 005468 558 AEKIENVY-AKCKFVGQCFVYGDSFNSALVAIVSVDQ 593 (695)
Q Consensus 558 p~~IE~~l-~~~p~V~~~~V~g~~~~~~~va~vv~~~ 593 (695)
|..++.++ ...+.|.+.-++... ...+...+++.+
T Consensus 344 p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~ 379 (430)
T TIGR02304 344 PDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCEL 379 (430)
T ss_pred HHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeCh
Confidence 99999885 567899988777654 344444455544
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-09 Score=83.94 Aligned_cols=67 Identities=24% Similarity=0.159 Sum_probs=52.4
Q ss_pred HHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCC
Q 005468 560 KIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQL 636 (695)
Q Consensus 560 ~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l 636 (695)
|||+++.+||+|.+|+|+|.++ ++.++|+|++ . .++|+++++ .+|
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~------------------------------~~~i~~~~~-~~l 48 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-D------------------------------EEEIRDHLR-DKL 48 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-H------------------------------HHHHHHHHH-HHS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-e------------------------------ecccccchh-hhC
Confidence 7999999999999999999653 4689999999 2 355566665 579
Q ss_pred CCccee--eEEEEeec-CCCCCCCccCcccc
Q 005468 637 RGFEFV--KAVTLVLE-PFTVENGLLTPTFK 664 (695)
Q Consensus 637 ~~~~~p--~~i~~~~~-~p~~~~~~~t~~gK 664 (695)
++|++| ..++.+++ +| +|++||
T Consensus 49 ~~~~~P~~~~~v~~~~~lP------~t~~GK 73 (73)
T PF13193_consen 49 PPYMVPRRIRFVRLDEELP------RTPSGK 73 (73)
T ss_dssp -GGGS-SEEEEEEESSSEE------BETTSS
T ss_pred CCcceeeEEEEccccCcCC------CCCCCC
Confidence 999999 55555577 99 999998
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-07 Score=97.57 Aligned_cols=237 Identities=14% Similarity=0.146 Sum_probs=137.9
Q ss_pred CCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc----cccCC-CcEEEEeCChhhH---HHH-H-HHHHHHHcCc
Q 005468 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG----TKFYP-SDVYISYLPLAHI---YER-A-NQVMTVYSGV 323 (695)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~-~d~~l~~~pl~h~---~~~-~-~~~~~l~~G~ 323 (695)
.++++..++-||||||.|--+.+.+..+......+... ..... .-.++...|-... ++. . ..+..+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 34667788999999999866666666555444333222 12221 2233333443211 111 1 1222334445
Q ss_pred EEeEec--CChhhHHHHH----HhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 005468 324 AVGFYQ--GDNMKLMDDM----AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (695)
Q Consensus 324 ~~~~~~--~~~~~l~~~i----~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (695)
...+-. .|...+++.+ .+.++..++++|.++-.++..+.+....
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~------------------------------ 216 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIR------------------------------ 216 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCc------------------------------
Confidence 433312 3566666655 4567899999998777665543221100
Q ss_pred HHHHHHHHHhhcCCcEEEEEEcC------CCCc-HHHHHHHHHHhCC----ccccccccccccccccccCCCCCCCCCcC
Q 005468 398 DRLVFNKIKDKLGGRVRFMGSGA------SPLS-PDVLDFLKICFGG----RVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (695)
Q Consensus 398 d~l~~~~~~~~~g~~lr~i~~gG------~~l~-~~~~~~~~~~~g~----~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (695)
-.+.+..+.+-.|| +.++ .++.+.+.+.||+ .+++.|||||.....+......
T Consensus 217 ---------~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~------- 280 (365)
T PF04443_consen 217 ---------FRLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH------- 280 (365)
T ss_pred ---------ccCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc-------
Confidence 00112455566665 5575 4667788888998 6999999999765444321111
Q ss_pred CCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC--------CcE
Q 005468 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG--------GRL 538 (695)
Q Consensus 467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d--------G~l 538 (695)
.++|.- +.|.|+.+...++.|+ .|-|.+-.+... . .-+..-|.|+|.+..+ .++
T Consensus 281 ~~~p~w-V~iRDp~tl~~~~~Ge---~Gli~vidl~~~-s-------------~p~~IlTeDlGvl~~~~~c~cr~g~~f 342 (365)
T PF04443_consen 281 FHVPPW-VIIRDPETLEPLPPGE---TGLIQVIDLANT-S-------------YPGFILTEDLGVLHGDDDCGCRKGKYF 342 (365)
T ss_pred ccCCCe-EEEECCCCCcCCCCCC---eeEEEEEccccc-C-------------CCcEEEEcceeeecCCCCCCCccCCEE
Confidence 122222 7777988888888887 898988776421 1 2344679999988654 279
Q ss_pred EEEecCCCeeecCCeeee
Q 005468 539 KIIDRKKNIFKLAQGEYI 556 (695)
Q Consensus 539 ~i~GR~~d~ikl~~G~~v 556 (695)
.++||.+.-=. +|-..
T Consensus 343 ~vlGR~~~ae~--RGCs~ 358 (365)
T PF04443_consen 343 EVLGRADGAEI--RGCSL 358 (365)
T ss_pred EEEeCCCCCcc--CCcHH
Confidence 99999986542 45443
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.3e-05 Score=83.09 Aligned_cols=158 Identities=17% Similarity=0.228 Sum_probs=86.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHhCC--ccccccccccccccccccCCCCCCCCCcCCCccCc-EEEEeecCCCC----
Q 005468 411 GRVRFMGSGASPLSPDVLDFLKICFGG--RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC-EIKLVDVPEMN---- 483 (695)
Q Consensus 411 ~~lr~i~~gG~~l~~~~~~~~~~~~g~--~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~d~~~~~---- 483 (695)
++|+.|.+-+.--.....+.+++.+|- .+..+|++||+...+-.. +.. . .+.+.++. -+..++.++..
T Consensus 267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~~~--~--~~~l~~~~~ffEFip~~~~~~~~~ 341 (528)
T PF03321_consen 267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-PED--P--GYVLAPDSGFFEFIPVDEDEQNPS 341 (528)
T ss_dssp TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--CCC------EEE-TTSSEEEEEE-STT-----
T ss_pred CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-CCC--C--ceEeecCCeEEEEEeccCCccccc
Confidence 588866554444444666777777752 355899999964322221 111 1 11222221 34455544322
Q ss_pred ---------CCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEec--CC--cEEEEecCCCeeec
Q 005468 484 ---------YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP--GG--RLKIIDRKKNIFKL 550 (695)
Q Consensus 484 ---------~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~--dG--~l~i~GR~~d~ikl 550 (695)
.+..| +.-||.|+.. .|.|. |+.||++++.. ++ .+.|+||.+.++.+
T Consensus 342 ~~~~~l~~~ele~G---~~YelviTt~---~GLyR--------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l 401 (528)
T PF03321_consen 342 EQPKTLLLHELEVG---EEYELVITTN---SGLYR--------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL 401 (528)
T ss_dssp --SSSEEGGG--TT----EEEEEEEST---TS-SS--------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S
T ss_pred CCCceecHHHhcCC---CeEEEEEecc---cceee--------------eecCCEEEEeeccCCCcEEEEeccCCceeec
Confidence 11222 2556777653 23331 89999999853 45 69999999999998
Q ss_pred CCeeeechHHHHHHHhcC-----cCcceEEEEeeC---CCCeEEEEEEeCHH
Q 005468 551 AQGEYIAAEKIENVYAKC-----KFVGQCFVYGDS---FNSALVAIVSVDQD 594 (695)
Q Consensus 551 ~~G~~v~p~~IE~~l~~~-----p~V~~~~V~g~~---~~~~~va~vv~~~~ 594 (695)
.||+++-.+|++++.+. -.+.+..|..+. ....-+-++.+...
T Consensus 402 -~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~ 452 (528)
T PF03321_consen 402 -FGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE 452 (528)
T ss_dssp -SS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred -ceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence 89999999999999664 235566676662 34555556666543
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00059 Score=75.67 Aligned_cols=129 Identities=14% Similarity=0.152 Sum_probs=76.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhC-C-ccccccccccccccccccCCCCCCCCCcCCC--ccCcEEEEeecCCCCC----
Q 005468 413 VRFMGSGASPLSPDVLDFLKICFG-G-RVTEGYGMTETSCLISQLDEGDNLSGHVGSP--NAACEIKLVDVPEMNY---- 484 (695)
Q Consensus 413 lr~i~~gG~~l~~~~~~~~~~~~g-~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p--~~~~~v~i~d~~~~~~---- 484 (695)
+.+++.||.. .....++..+| . .+..+|++||+...+-..+ ...+..++.. +.+.-+..++.++.+.
T Consensus 307 i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~--~~~p~~~~~~l~~~~~ffEFiP~~~~~~~~~~ 381 (597)
T PLN02249 307 LDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNP--MCKPSEVSYTIMPNMAYFEFLPHNHDGDGALD 381 (597)
T ss_pred EEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCC--CCCCCCcceEecCCcEEEEeeecccCCcccCC
Confidence 6677777755 55566666553 3 3668999999653222211 1111112221 1234444554332110
Q ss_pred ---------CCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC----CcEEEEecCCCeeecC
Q 005468 485 ---------TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GRLKIIDRKKNIFKLA 551 (695)
Q Consensus 485 ---------~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~l~i~GR~~d~ikl~ 551 (695)
+..|+ .-||+|+.. .|-| -|+.||+.++..- =.|.|+||.+.++.+
T Consensus 382 ~~~~v~l~eVe~G~---~Y~lVvTT~---~GLy--------------RY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~- 440 (597)
T PLN02249 382 ETSLVELADVEVGK---EYELVITTY---AGLY--------------RYRVGDILRVTGFHNSAPQFKFIRRKNVLLSI- 440 (597)
T ss_pred CCcEecHHHcCCCC---eEEEEEEcc---ccee--------------EeecCCEEEEeeccCCCcEEEEEccCCcceec-
Confidence 11121 345666542 1222 2899999998632 258999999999997
Q ss_pred CeeeechHHHHHHHhc
Q 005468 552 QGEYIAAEKIENVYAK 567 (695)
Q Consensus 552 ~G~~v~p~~IE~~l~~ 567 (695)
.||++.-++++.++.+
T Consensus 441 ~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 441 ESDKTDEADLQKAVEN 456 (597)
T ss_pred ccccCCHHHHHHHHHH
Confidence 8999999999998866
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0079 Score=66.38 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=37.0
Q ss_pred eecccEEEEe----cCCcEEEEecCCCeeecCCeeeechHHHHHHHhcC
Q 005468 524 FHTGDIGMWI----PGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKC 568 (695)
Q Consensus 524 ~~TGDlg~~~----~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~ 568 (695)
||.||+.++. .-=.+.|++|.+.+..+ .|++.+-+++-.++.+.
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQA 464 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeec-ccccCCHHHHHHHHHHH
Confidence 8999998874 22369999999999998 89999999998888553
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0091 Score=65.78 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=36.4
Q ss_pred eecccEEEEec----CCcEEEEecCCCeeecCCeeeechHHHHHHHhc
Q 005468 524 FHTGDIGMWIP----GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK 567 (695)
Q Consensus 524 ~~TGDlg~~~~----dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~ 567 (695)
|+.||+.++.. .=.+.|++|.+-+..+ .|++.+-.++-.++.+
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSI-DSDKTDEVELQNAVKN 469 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeec-ccccCCHHHHHHHHHH
Confidence 89999988742 2359999999999998 8999999999888754
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.024 Score=47.05 Aligned_cols=86 Identities=16% Similarity=0.079 Sum_probs=48.0
Q ss_pred eeeechHHHHHHHhcCcCcc-eEEE--EeeCCCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 553 GEYIAAEKIENVYAKCKFVG-QCFV--YGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~-~~~V--~g~~~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
|.||+|..||+++.++|++. +..+ .-......+...|...++. . .+....+++.+.+.+.|++
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~----------~----~~~~~~~~l~~~i~~~lk~ 66 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF----------S----DDAEDLEALAERIAERLKE 66 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC----------C----TTHHHHHHHHHHHHHHHHH
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc----------C----cchHHHHHHHHHHHHHHHh
Confidence 78999999999999999998 3322 2233445666677777632 0 0001123455566666665
Q ss_pred HHHhcCCCCcceeeEEEEee--cCCCCCCCccCccccCCh
Q 005468 630 LGREAQLRGFEFVKAVTLVL--EPFTVENGLLTPTFKIKR 667 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~--~~p~~~~~~~t~~gKi~R 667 (695)
.+ ++. ..|.+++ .+| ++ .||.+|
T Consensus 67 ~l---gv~-----~~V~lv~~gtLp------r~-~~K~~R 91 (96)
T PF14535_consen 67 RL---GVR-----PEVELVPPGTLP------RS-EGKAKR 91 (96)
T ss_dssp HH---SS------EEEEEE-TT-S----------SSSS-S
T ss_pred hc---Cce-----EEEEEECCCCcc------CC-CCcceE
Confidence 54 232 2666665 488 76 678877
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.48 Score=50.18 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=73.8
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCh--hHHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEE
Q 005468 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP--EWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 189 (695)
Q Consensus 112 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v 189 (695)
--+|+.++..-+..+|+.|...|..+||+|.++..-+. .-+-..+|+.++|++++|+.+. .-+.-..++++.++.+|
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 34799999999999999999999999998887765211 1167889999999999999883 45677789999999999
Q ss_pred EecccchhHHHhcc
Q 005468 190 FCVPQTLNSLLSCL 203 (695)
Q Consensus 190 i~~~~~~~~~~~~~ 203 (695)
.+.+..+-.+.+..
T Consensus 187 ~~tps~~l~lae~~ 200 (438)
T COG1541 187 AATPSYLLYLAEEA 200 (438)
T ss_pred EEChHHHHHHHHHH
Confidence 99988765554433
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=85.47 E-value=7 Score=42.29 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=70.0
Q ss_pred cCccCcce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCh--hHHHHHHHHHhcCCeEEeccCCCCHHHHHHH
Q 005468 105 DGTVGEYK--WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP--EWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180 (695)
Q Consensus 105 d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~i 180 (695)
.|..|..+ .+|..++......++..+...|+++||++........ ......+++...|+.++++.... .+.+...
T Consensus 84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 162 (422)
T TIGR02155 84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL 162 (422)
T ss_pred CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence 45555533 3577777666667777888889999998877655442 22234677889999999887654 5778899
Q ss_pred HHhccccEEEecccchhHHHh
Q 005468 181 VNHASVQAVFCVPQTLNSLLS 201 (695)
Q Consensus 181 l~~~~~~~vi~~~~~~~~~~~ 201 (695)
|+..+++++++.+..+..+.+
T Consensus 163 i~~~~~t~l~~~Ps~l~~L~~ 183 (422)
T TIGR02155 163 IQDFKPDIIMVTPSYMLNLLE 183 (422)
T ss_pred HHHHCCCEEEEcHHHHHHHHH
Confidence 999999999999877665543
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=85.36 E-value=9.5 Score=41.60 Aligned_cols=91 Identities=11% Similarity=0.071 Sum_probs=67.2
Q ss_pred cCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChh--HHHHHHHHHhcCCeEEeccCCCCHHHHHHH
Q 005468 105 DGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE--WLIVDHACSAYSFISVPLYDTLGPDAVKYI 180 (695)
Q Consensus 105 d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~i 180 (695)
.|..|.. ..+|..++...+..++..+...|+.+||++.++.+.+.. .....+++...|+.++|... .+....+
T Consensus 95 SGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~ 171 (445)
T TIGR03335 95 SGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRI 171 (445)
T ss_pred CCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHH
Confidence 4554443 347889998888888888888999999999988766542 23456788999998887653 2345678
Q ss_pred HHhccccEEEecccchhH
Q 005468 181 VNHASVQAVFCVPQTLNS 198 (695)
Q Consensus 181 l~~~~~~~vi~~~~~~~~ 198 (695)
+++.++.++++.......
T Consensus 172 i~~~~~t~l~~~ps~ll~ 189 (445)
T TIGR03335 172 IESYRPTGIVASVFKLLR 189 (445)
T ss_pred HHHhCCCEEEECHHHHHH
Confidence 899999999887665433
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 695 | ||||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 7e-25 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-23 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 1e-22 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-22 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-22 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 4e-22 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 3e-21 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 3e-21 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 4e-21 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-20 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 3e-20 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 3e-20 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 4e-20 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 5e-20 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 8e-19 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 2e-14 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 3e-14 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 4e-14 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 1e-12 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 2e-12 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 6e-12 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-11 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 5e-11 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-10 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 1e-10 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 6e-10 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 8e-10 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 4e-08 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 1e-07 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 2e-06 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 8e-06 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 2e-05 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 2e-05 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-05 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 6e-05 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 6e-05 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 8e-05 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 1e-04 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 1e-04 |
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 695 | |||
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 2e-78 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 2e-77 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 3e-77 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 3e-76 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 2e-75 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 7e-75 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 2e-72 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 3e-72 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 4e-72 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 7e-70 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 1e-69 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 2e-68 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 5e-67 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 4e-66 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 5e-66 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 4e-50 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 1e-40 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 3e-34 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 6e-34 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 5e-32 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 8e-31 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 2e-12 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 6e-09 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 4e-08 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 2e-07 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 4e-07 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 4e-07 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 8e-07 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 1e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 |
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 258 bits (661), Expect = 2e-78
Identities = 118/507 (23%), Positives = 187/507 (36%), Gaps = 91/507 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E V + L+ G+ G + E L++ A + +PL
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ Y + A + V C P + + + ++V + G
Sbjct: 89 LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG-------------- 134
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
+ ++ + DD+A I YTSGTTG KGA+LSH NL ++ +
Sbjct: 135 -SLTDAAAGASEAFAT-IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR 192
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLM---DDMAAL----RPTV 346
F P DV I LP+ H + + V V + +M + D L R TV
Sbjct: 193 FTPDDVLIHALPIYHTHG-----LFV--ASNVTLFARGSMIFLPKFDPDKILDLMARATV 245
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
VP Y R+ SP +
Sbjct: 246 LMGVPTFYTRLLQ----------------------------------SPRLTKETT---- 267
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
G +R SG++PL D G V E YGMTET+ S +GD + G VG
Sbjct: 268 ----GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVG 323
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGW 523
++ D PE + PR G I V+GP +FKGY++ +TK +DG+
Sbjct: 324 PALPGVSARVTD-PET-----GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGF 377
Query: 524 FHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DS 580
F TGD+G G + I+ R K++ + G + ++IE+ V + V G
Sbjct: 378 FITGDLGKIDERGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAMPGVVESAVIGVPHAD 436
Query: 581 FNSALVAIV------SVDQDALKAWAA 601
F + A+V ++D+ +
Sbjct: 437 FGEGVTAVVVRDKGATIDEAQVLHGLD 463
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 2e-77
Identities = 104/494 (21%), Positives = 183/494 (37%), Gaps = 75/494 (15%)
Query: 70 SRFPDHP-EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS 128
P +P E G+ + ++ + LG + G +Y E +G
Sbjct: 13 GPKPFYPIEEGSAGTQLRKYMERYAK---LGAIAFTNAVTGVD--YSYAEYLEKSCCLGK 67
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
L +G+ I L N E+ I A P + + + + +
Sbjct: 68 ALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI 127
Query: 189 VFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248
VF + L+ +++ V T++ IV++ D ++ + + S+ +
Sbjct: 128 VFSSKKGLDKVITVQKTVTTIKTIVIL---DSKVDYRGYQCLDTFIKRNTPPGFQASSFK 184
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA---GATLGTKFYPSDVYISYLP 305
+ + VA I +SG+TG PKG L+H N++ + G + P ++ +P
Sbjct: 185 TVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVP 244
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLYNR 356
H + M G + ++ D + T VP L+
Sbjct: 245 FHHGF-----GMFT---TLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296
Query: 357 IYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM 416
+ + LS + +
Sbjct: 297 L--------------------NKSELLNKYDLS----------------------NLVEI 314
Query: 417 GSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475
SG +PLS +V + + F V +GYG+TET+ I EGD+ G G + K
Sbjct: 315 ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAK 374
Query: 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
++D+ ++ GE+CV+GP++ KGY + TKE+IDE+GW HTGDIG +
Sbjct: 375 VIDLDTKKSLGPNRR---GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEE 431
Query: 536 GRLKIIDRKKNIFK 549
I+DR K++ K
Sbjct: 432 KHFFIVDRLKSLIK 445
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 256 bits (657), Expect = 3e-77
Identities = 102/496 (20%), Positives = 172/496 (34%), Gaps = 78/496 (15%)
Query: 70 SRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRV-RVDGTVGEYKWMTYGEAGTARTEVGS 128
P +P T + + Y + + D + +TY E +
Sbjct: 10 GPAPFYPLEDGTAGEQLH--KAMKRYALVPGTIAFTDAHIEVN--ITYAEYFEMSVRLAE 65
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
+ +G++ I + N ++ + P D + +N +
Sbjct: 66 AMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 125
Query: 189 VFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248
VF + L +L+ ++P ++ I+++ D + +T +
Sbjct: 126 VFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD---YQGFQSMYTFVTSHLPPGFNEYDFV 182
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA---GATLGTKFYPSDVYISYLP 305
P S + +A I +SG+TG PKG L H + G + P +S +P
Sbjct: 183 PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLYNR 356
H + M G + LM + + VP L++
Sbjct: 243 FHHGF-----GMFT---TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 294
Query: 357 IYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM 416
A + LS + +
Sbjct: 295 F--------------------AKSTLIDKYDLS----------------------NLHEI 312
Query: 417 GSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475
SG +PLS +V + + F + +GYG+TET+ I EGD+ G VG E K
Sbjct: 313 ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAK 372
Query: 476 LVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
+VD + T + RGE+CVRGP+I GY + T +ID+DGW H+GDI W
Sbjct: 373 VVD-LD---TGKTLG-VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427
Query: 534 PGGRLKIIDRKKNIFK 549
I+DR K++ K
Sbjct: 428 EDEHFFIVDRLKSLIK 443
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 3e-76
Identities = 98/505 (19%), Positives = 173/505 (34%), Gaps = 89/505 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
MTY + L GI+KG + L N E+ + + + ++VP+ L
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
V +I++ + + V + + + ++ + G D
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADS------------- 150
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
+ L + +P DD I YTSGTTG PKG V +H ++ ++ +
Sbjct: 151 --LAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCS 349
D + LP+ H+ + + GV + F D K+ + R + +
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQF---DATKVWSLIVEERVCIGGA 264
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
VP + M P + L
Sbjct: 265 VPAIL------------------------------NFMRQ----VPEFAELDA------- 283
Query: 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGS 467
R+ +G +P+ ++ V +GY +TE+ + L D L G G
Sbjct: 284 -PDFRYFITGGAPMPEALIKIYAA-KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGR 341
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPR--GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
++ + + GE+ ++ ++ K Y+ T++ D +GWF
Sbjct: 342 ATMFTDVAVRG-------DDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFR 393
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA-AEKIENVYAKCKFVGQCFVYG---DSF 581
TGDIG G L I DR K++ GE + AE IE+V V + V G + +
Sbjct: 394 TGDIGEIDDEGYLYIKDRLKDMIISG-GENVYPAE-IESVIIGVPGVSEVAVIGLPDEKW 451
Query: 582 NSALVAIV-----SVDQDALKAWAA 601
AIV V + + +
Sbjct: 452 GEIAAAIVVADQNEVSEQQIVEYCG 476
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 2e-75
Identities = 122/510 (23%), Positives = 183/510 (35%), Gaps = 103/510 (20%)
Query: 57 NVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
++RS + + P+ H + + L ++G G+ TY
Sbjct: 7 FIFRSKLPDIYI-------PKNLPLHSYVLENLSNHSSKPCL-----INGANGDV--YTY 52
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
+ V SGL GI +G I L+ + PE+++ S I P
Sbjct: 53 ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112
Query: 177 VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236
+ + + + + E V+++ V D L +
Sbjct: 113 LAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCVDSAPDG------------CLHF 159
Query: 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA----GATLGT 292
S L + PDDV + Y+SGTTG PKG +L+H LI SVA G
Sbjct: 160 SELTQADENEAPQV-DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL 218
Query: 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------R 343
F+ DV + LP+ HIY + + G G + +M ++ +L +
Sbjct: 219 YFHSEDVILCVLPMFHIY-----ALNS--IMLCGLRVGAPILIMPKFEIGSLLGLIEKYK 271
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
++ VP + I A + LS
Sbjct: 272 VSIAPVVPPVMMSI--------------------AKSPDLDKHDLS-------------- 297
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETS-----CLISQLDE 457
+R + SG +PL ++ D R+ +GYGMTE CL +
Sbjct: 298 --------SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEP 349
Query: 458 GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTK 515
D G G+ E+K+VD PE T P GEIC+RG I KGY D T
Sbjct: 350 FDIKPGACGTVVRNAEMKIVD-PE---TGASLP-RNQPGEICIRGDQIMKGYLNDPEATS 404
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
ID++GW HTGDIG L I+DR K
Sbjct: 405 RTIDKEGWLHTGDIGYIDDDDELFIVDRLK 434
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 7e-75
Identities = 97/505 (19%), Positives = 180/505 (35%), Gaps = 103/505 (20%)
Query: 70 SRFPD--HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWM----TYGEAGTAR 123
FP +P+I + D A + F + + + + E
Sbjct: 9 IGFPSLYYPKI-SLADRIDAAAEKFGEKTAI-----ISAEPKFPSEFPESMNFLEICEVT 62
Query: 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNH 183
++ SG+ G+ KG +G+ N ++++ +A + VP+ +++I+N
Sbjct: 63 KKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILND 122
Query: 184 ASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQG 243
+ + + L + V + V+GG ++ + S ++ G
Sbjct: 123 SEATTLVVHSMLYENFKPVLEKTG-VERVFVVGG--------------EVNSLSEVMDSG 167
Query: 244 RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303
+ + +DVA I YT GTTG PKG +L+H NL A+ + T D +
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGC 227
Query: 304 LPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLY 354
+P+ H E + V + G+ +M + L + T +VP
Sbjct: 228 MPMFHSAE-----FGL---VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPAL 279
Query: 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414
N ++ ++ + +
Sbjct: 280 N------------------------------VLV--NTLESSNKTYDWSYL--------K 299
Query: 415 FMGSGASPLSPDVLDFLKICFGGR-------VTEGYGMTETSCLIS-QLDEGDNLSGHVG 466
+GA P++P +++ L + + +GMTE +++ + S G
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQG 359
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVI----DE 520
P + E+K++ E + GEI +RGP IFKGY+K E + +E
Sbjct: 360 VPMSDIELKVIS-LE---DGRELG-VGESGEIVIRGPNIFKGYWKREKENQECWWYDEKG 414
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRKK 545
+F TGD+G G L DR K
Sbjct: 415 RKFFRTGDVGFIDEEGFLHFQDRVK 439
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 2e-72
Identities = 109/501 (21%), Positives = 174/501 (34%), Gaps = 91/501 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E A +G I + ++ E + A +VPL G
Sbjct: 49 LTYAELAAA-----AGATAGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSG 103
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ +I++ ++ V P +E+P + +D +
Sbjct: 104 DKELAHILSDSAPSLVLAPPD---------AELPPALGALERVDVDVRARGAV------- 147
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
P D A + YTSGTTG PKGAV+ L ++ +
Sbjct: 148 ---------------PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192
Query: 294 FYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSVP 351
+ DV + LPL H++ ++ + G +V ++ T+ VP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVP 251
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
+Y+RI + L + L
Sbjct: 252 TMYHRIAE----TLPADPELAKAL-----------------------------------A 272
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
R + SG++ L + + G RV E YGMTET S +G+ +G VG P
Sbjct: 273 GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPG 332
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E++LV+ + + GEI VRGP +F Y T EDG+F TGD+ +
Sbjct: 333 VELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAV 391
Query: 532 WIPGGRLKIIDRK-KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVA 587
P G ++I+ RK ++ K G I A +IEN + V + V G +VA
Sbjct: 392 RDPDGYVRIVGRKATDLIKSG-GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVA 450
Query: 588 IV-------SVDQDALKAWAA 601
+ L A
Sbjct: 451 WIVPADPAAPPALGTLADHVA 471
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 3e-72
Identities = 102/507 (20%), Positives = 181/507 (35%), Gaps = 95/507 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+T+ + + SGL+ G+ G + + N E + + A + I +P+ L
Sbjct: 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D + +++ + V + + L + V+ IG
Sbjct: 92 ADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAP--------- 142
Query: 234 LTYSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
+ +L S PFS P+ D I +T+ G P+GA++S GNL+ + +
Sbjct: 143 --FKDLASDT-----PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA 195
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVF 347
+ +DV + LPL H+ + +G A F D + D+ A + TV
Sbjct: 196 WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF---DPAQAARDIEAHKVTVM 252
Query: 348 CSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407
+ +L +L
Sbjct: 253 AEFAPML------------------------------GNIL----DQAAPAQL------- 271
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467
+R + +P + + + C +G +ETS L + D G
Sbjct: 272 ---ASLRAVTGLDTPETIERFE--ATCPNATFWATFGQSETSGLSTFAPYRDRP-KSAGR 325
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
P + +VD +ED+P P GEI +RGP +FKGY+ + T+ +GW
Sbjct: 326 PLFWRTVAVVD-------AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWH 377
Query: 525 HTGDIGMWIPGGRLKIIDR--KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---D 579
HTGD+G + G L R +K + K GE + ++E + + V G
Sbjct: 378 HTGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIGVPDP 436
Query: 580 SFNSALVAIV------SVDQDALKAWA 600
++ A+ A+ S+ DAL +
Sbjct: 437 QWSEAIKAVCVCKPGESIAADALAEFV 463
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 4e-72
Identities = 91/501 (18%), Positives = 172/501 (34%), Gaps = 82/501 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TY + + L + S +GLY N + +I+ HAC + + L
Sbjct: 27 YTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLT 83
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSL--LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
P+ + + VQ +FC + L ++ + G+ D + T
Sbjct: 84 PNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDT-- 141
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
+ ++ + + + DD+A+I +TSGTTG K + N AS G
Sbjct: 142 ---SNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES 198
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSV 350
F ++S LP+ HI + + V G V + +++ + R T V
Sbjct: 199 LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLV 258
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P+ ++ + +
Sbjct: 259 PQTL------------------------------NWLMQ----QGLHEPY---------- 274
Query: 411 GRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGS 467
++ + G + LS +++ L+ + + +GMTET + VG
Sbjct: 275 -NLQKILLGGAKLSATMIETALQ--YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGM 331
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
P+A ++K+ + GE+ ++G + GY E+G+F+TG
Sbjct: 332 PSANVDVKIKN---------PNKEGHGELMIKGANVMNGYLYPT-DLTGTF-ENGYFNTG 380
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIA-AEKIENVYAKCKFVGQCFVYG---DSFNS 583
DI G + I DR+K++ + GE I + IE V + + G D++
Sbjct: 381 DIAEIDHEGYVMIYDRRKDLII-SGGENIYPYQ-IETVAKQFPGISDAVCVGHPDDTWGQ 438
Query: 584 ALVAIV----SVDQDALKAWA 600
+ + L A+
Sbjct: 439 VPKLYFVSESDISKAQLIAYL 459
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 235 bits (603), Expect = 7e-70
Identities = 91/516 (17%), Positives = 163/516 (31%), Gaps = 99/516 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+T+ E V + L G+ + + N + +I A + L L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ ++ + A + + + + I+ +G D P + G I
Sbjct: 90 SAELAELIKRGEMTAAVIAVGR--QVADAIFQSGSGARIIFLG--DLVRDGEPYSYGPPI 145
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGATLG 291
+P A I YTSGTTG PK A++ +G
Sbjct: 146 ---------------EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG 190
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG--------FYQGDNMKLMDDMAALR 343
+ +V + +PL H+ + + +A+ F + + + +
Sbjct: 191 LRHGRHNVVLGLMPLYHVVG---FFAVLVAALALDGTYVVVEEF---RPVDALQLVQQEQ 244
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
T + P + L AA +A L
Sbjct: 245 VTSLFATPTHLDA------------------LAAAAAHAGSSLKLD-------------- 272
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
+R + + + VL+ + G YG TE + G
Sbjct: 273 --------SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT---G 321
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGP-LIFKGYYKDEIQTKEVID 519
+P E+++V D+ GE+ V F GY T E +
Sbjct: 322 TEMAPGFFSEVRIVR-IG---GGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA-AEKIENVYAKCKFVGQCFVYG 578
DGW+ T D+ +W P G ++I+ R ++ + GE I +E IE V V + V G
Sbjct: 378 -DGWYRTSDVAVWTPEGTVRILGRVDDMII-SGGENIHPSE-IERVLGTAPGVTEVVVIG 434
Query: 579 ---DSFNSALVAIV------SVDQDALKAWAASEGI 605
+ ++ A V ++ DAL + S +
Sbjct: 435 LADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL 470
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 235 bits (602), Expect = 1e-69
Identities = 89/458 (19%), Positives = 147/458 (32%), Gaps = 66/458 (14%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TYGE S L G+ I L ++ + + V L
Sbjct: 49 TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P Y++ H+ +AV + ++ L +++ + P L
Sbjct: 109 PADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRL-------A 161
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGT 292
+ L+ + + DD+A Y+SG+TG PKG V +H NL + A
Sbjct: 162 PLFEELIDAAAPAAKA-AATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220
Query: 293 KFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCS 349
+DV S L Y N + + G + + RPTVF
Sbjct: 221 GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYG 280
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
VP LY ML N D
Sbjct: 281 VPTLYA------------------------------NMLVSPNLPARADV---------- 300
Query: 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469
+R S L ++ + FG + +G G TE + G G G P
Sbjct: 301 --AIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPV 358
Query: 470 AACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526
EI+L D P G++ ++GP Y+ + +++ W +
Sbjct: 359 PGYEIELRD-------EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRS 410
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
GD +P G R ++ K++ G+Y++ ++E V
Sbjct: 411 GDKYCRLPNGCYVYAGRSDDMLKVS-GQYVSPVEVEMV 447
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 2e-68
Identities = 120/553 (21%), Positives = 211/553 (38%), Gaps = 98/553 (17%)
Query: 25 SSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLV--SRFPD--HPEIGT 80
SS H+ ++G + + P++ + +S+ + ++ S+ PD P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSKLPDIYIPNHLS 62
Query: 81 THDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSC 140
HD + + F L ++G G TY + ++ + G+++
Sbjct: 63 LHDYIFQNISEFATKPCL-----INGPTGHV--YTYSDVHVISRQIAANFHKLGVNQNDV 115
Query: 141 IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLL 200
+ L N PE+++ A S + P + ++ + + + ++ +
Sbjct: 116 VMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIK 175
Query: 201 SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK--PDDV 258
++ V ++ + IP L ++ L + + PDDV
Sbjct: 176 PLQNDDG-VVIVCIDDNESVPIPE-------GCLRFTELTQSTTEASEVIDSVEISPDDV 227
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIASVA----GATLGTKFYPSDVYISYLPLAHIYERAN 314
+ Y+SGTTG PKG +L+H L+ SVA G F+ DV + LP+ HIY
Sbjct: 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY---- 283
Query: 315 QVMTVYSGVAVGFYQGDNMKLM-----DDMAAL----RPTVFCSVPRLYNRIYAGITSAV 365
+ + G G + +M + + L + TV VP
Sbjct: 284 -ALNSI--MLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-------------- 326
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG-GRVRFMGSGASPLS 424
P+ + + +K +R + SGA+PL
Sbjct: 327 -----------------------------PIVLAIAKSSETEKYDLSSIRVVKSGAAPLG 357
Query: 425 PDVLD-FLKICFGGRVTEGYGMTETSCLIS-----QLDEGDNLSGHVGSPNAACEIKLVD 478
++ D ++ +GYGMTE +++ + SG G+ E+K+VD
Sbjct: 358 KELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD 417
Query: 479 VPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
P+ T + GEIC+RG I KGY + T E ID+DGW HTGDIG+
Sbjct: 418 -PD---TGDSLS-RNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDD 472
Query: 537 RLKIIDRKKNIFK 549
L I+DR K + K
Sbjct: 473 ELFIVDRLKELIK 485
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 230 bits (590), Expect = 5e-67
Identities = 90/470 (19%), Positives = 158/470 (33%), Gaps = 87/470 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E A + L GI G + N E I A V +
Sbjct: 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + + Q L + ++E ++R++ ++ +
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-------- 162
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+ ++ + +P D+VA + GTTGTPK +H + SV +
Sbjct: 163 -----HNLQDAINHPAEDFTA-TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRS 216
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
+F Y+ +P AH Y M+ G F G + L D +
Sbjct: 217 VEICQFTQQTRYLCAIPAAHNY-----AMSS-PGSLGVFLAGGTVVLAADPSATLCFPLI 270
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ V VP + A + +A L+
Sbjct: 271 EKHQVNVTALVPPAVSL------------------WLQALIEGESRAQLA---------- 302
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
++ + G + LS + + G ++ + +GM E ++LD+
Sbjct: 303 ------------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSA 350
Query: 460 NL-SGHVGSPNA-ACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
G P E+ + D E P P+ G + RGP F+GYYK
Sbjct: 351 EKIIHTQGYPMCPDDEVWVADA-------EGNPLPQGEVGRLMTRGPYTFRGYYKSPQHN 403
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
D +G++ +GD+ P G + + R+K+ GE IAAE+IEN+
Sbjct: 404 ASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRG-GEKIAAEEIENL 452
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 4e-66
Identities = 92/470 (19%), Positives = 156/470 (33%), Gaps = 91/470 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+Y E T + +G GI + + + N E+ V A + V +
Sbjct: 51 WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ Y A A S++PT++ I+V G ++ +P
Sbjct: 111 SSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLP----- 165
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
L + K DVA + + G+TG K +H + I S+ +
Sbjct: 166 -----------LEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRS 214
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
S VY++ LP+AH Y ++ GV Y G + L +
Sbjct: 215 VEVCWLDHSTVYLAALPMAHNY-----PLSSP-GVLGVLYAGGRVVLSPSPSPDDAFPLI 268
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ T+ VP L + + R
Sbjct: 269 EREKVTITALVPPLA------------------------------MVWMD----AASSRR 294
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL-DEG 458
++ + G + S + +K FG + + +GM E ++L D
Sbjct: 295 DDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPE 346
Query: 459 DNLSGHVGSP-NAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
+ + G P + E ++ D D+ G + RGP +GYYK E
Sbjct: 347 EIIVNTQGKPMSPYDESRVWD-------DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHN 399
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
EDG++ TGDI G + + R K+ GE +AAE++EN
Sbjct: 400 AASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENH 448
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 5e-66
Identities = 78/470 (16%), Positives = 154/470 (32%), Gaps = 87/470 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E T + + L G+ KG + N E+ IV A + + +
Sbjct: 56 LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHR 115
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + + + Q + S + +I+++ L
Sbjct: 116 QYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL--- 172
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+ + FS D+VA + G+TGTPK +H + SV +
Sbjct: 173 ---------DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRAS 223
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
+ + LP H + +++ G + G + + + +
Sbjct: 224 AEICGLNSNTRLLCALPAPHNF-----MLSSP-GALGVLHAGGCVVMAPNPEPLNCFSII 277
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ + VP L +
Sbjct: 278 QRHQVNMASLVPSAV------------------------------IMWLE----KAAQYK 303
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL-DEG 458
++ + G + + + ++ + +GM E ++L D
Sbjct: 304 DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSD 355
Query: 459 DNLSGHVGSP-NAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
+ + G P ++ EIK+VD + + P G + RGP F GYY+
Sbjct: 356 EQIFTTQGRPISSDDEIKIVD-------EQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
+V DED ++++GD+ P G L+++ R K+ GE IA+E+IE +
Sbjct: 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKL 457
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 4e-50
Identities = 115/510 (22%), Positives = 180/510 (35%), Gaps = 114/510 (22%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTE-VGSGLIYHGISKGSCIGLYF 145
RA F V GE TY E R + GL G+ G +
Sbjct: 26 RAAALFGR-----KEVVSRLHTGEVHRTTYAEVY-QRARRLMGGLRALGVGVGDRVATLG 79
Query: 146 VNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE 205
N L A + L P + YI+NHA + + P L + + E
Sbjct: 80 FNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE 139
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPD----DVATI 261
+ TV+ VV+ + L Y L + +
Sbjct: 140 LKTVQHFVVMD--EKAPEGY--------LAYEEALGEE--------ADPVRVPERAACGM 181
Query: 262 CYTSGTTGTPKGAVLSH-GNLIASVAGAT-LGTKFYPSDVYISYLPLAHIYERANQVMTV 319
YT+GTTG PKG V SH ++ S+A + GT DV + +P+ H N
Sbjct: 182 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH----VNAWCLP 237
Query: 320 YSGVAVG--------FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
Y+ VG + L++ T VP ++ + + ++G
Sbjct: 238 YAATLVGAKQVLPGPRLDPAS--LVELFDGEGVTFTAGVPT----VWLALADYLESTGH- 290
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD-F 430
+L R + G S ++ F
Sbjct: 291 ------------------------------------RLKTLRRLV-VGGSAAPRSLIARF 313
Query: 431 LKICFGGRVTEGYGMTETSCLISQ-----------LDEGDNLSGHVGSPNAACEIKLVDV 479
+ G V +GYG+TETS ++ Q +E L G P +++ D
Sbjct: 314 ER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD- 370
Query: 480 PEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534
E P P+ GE+ ++GP I GYY +E T+ + DG+F TGDI +W
Sbjct: 371 EEGR------PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424
Query: 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
G ++I DR K++ K + GE+I++ +EN
Sbjct: 425 EGYVEIKDRLKDLIK-SGGEWISSVDLENA 453
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 1e-40
Identities = 71/437 (16%), Positives = 139/437 (31%), Gaps = 75/437 (17%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
G+ + E + + L G+ +G + + PEW +V C I +P
Sbjct: 69 GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMP 128
Query: 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
+ + Y + + +A+ + + + + SE P++R+ +++
Sbjct: 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD------ 182
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
L + LL S + + I +TSGT+G PK A S+ +L
Sbjct: 183 ----GWLNFKKLL-NEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM 237
Query: 288 ATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQGDNM---KLMDDMAALR 343
T SD+ + I +M G + ++ +++
Sbjct: 238 DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYP 297
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
P +Y R+ Q LS
Sbjct: 298 IKSMMGAPIVY-------------------RML-------LQQDLSSYKFP--------- 322
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
++ + L P+ L+ + G + E YG TET G
Sbjct: 323 --------HLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPG 374
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG-----PLIFKGYYKDEIQTK 515
++G+ + +++++D + P G+I +R IF GY + +T
Sbjct: 375 YMGTAASCYDVQIID-------DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTA 427
Query: 516 EVIDEDGWFHTGDIGMW 532
I ++ GD G+
Sbjct: 428 ANI-RGDFWLLGDRGIK 443
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 6e-34
Identities = 81/456 (17%), Positives = 153/456 (33%), Gaps = 109/456 (23%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G K T+ + + + + HGI KG + L +R ++ I+VP
Sbjct: 82 GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPA 141
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-----VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
L + Y + A ++ + C VP+ ++ + ++P + V ++ I
Sbjct: 142 THMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWID 201
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPP---KPDDVATICYTSGTTGTPKGAVLSHGN 280
+ L + + + K +D+ + ++SGT G PK +
Sbjct: 202 ------------FRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTY 249
Query: 281 LIASVAGATLGTKFYPSDVY-----------ISYL---PLAHIYERANQVMTVYSGVAVG 326
+ + A ++ + G AV
Sbjct: 250 PLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA-------------GCAVF 296
Query: 327 FYQG---DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383
Y + +++ + T FC+ P +Y R
Sbjct: 297 VYDYDRFEAKNMLEKASKYGVTTFCAPPTIY-------------------RFL------- 330
Query: 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGY 443
+ LS N S + ++ PL+P+V + G ++ EG+
Sbjct: 331 IKEDLSHYNFSTL-----------------KYAVVAGEPLNPEVFNRFLEFTGIKLMEGF 373
Query: 444 GMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG 500
G TET I+ + G +G P +I+L+D + + C GEI +
Sbjct: 374 GQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-------RDGRLCEVGEEGEIVINT 426
Query: 501 ----PL-IFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
P+ +F Y KD +T+E DG++HTGD+
Sbjct: 427 MEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAW 461
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 5e-32
Identities = 94/492 (19%), Positives = 160/492 (32%), Gaps = 120/492 (24%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
MTY + + + L G G + L F + C I+VP+Y
Sbjct: 41 MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100
Query: 174 PDA---VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230
+ IV ++ V + + + D++ + P
Sbjct: 101 EKLLDKAQRIVTNSKPVIVLMIADHIKKFTA------------------DELNTNPKFLK 142
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290
+ + ++ S+ QP + K +D+A + YTSG+T PKG ++SH NL+ ++
Sbjct: 143 IPAIALESIELNRSSSWQP-TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
+ S+LP H M + + Y G +M P F
Sbjct: 202 SFHMNDETIIFSWLPPHH-------DMGLIGCILTPIYGGIQAIMM------SPFSFLQN 248
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P + + SG N AY +I+++
Sbjct: 249 PLSWLKHIT--KYKATISGS-----PNFAY------------------DYCVKRIREEKK 283
Query: 411 -----GRVRFMGSGASPLSPDVLD-FLKIC--FGGR---VTEGYGMTETSCLISQLDEG- 458
+GA P+ + ++ F + FG R YG+ E + L++ G
Sbjct: 284 EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS 343
Query: 459 ---------DNLSGH---------------VGSPNAACEIKLVDVPEMNYTSEDQPCPR- 493
+ H V S N E+K++D P+ PC
Sbjct: 344 SYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIID-PDTL-----IPCDFD 397
Query: 494 --GEICVRGPLIFKGYYKDEIQTKEVI--------DEDGWFHTGDIGMWIPG-----GRL 538
GEI V+ + KGY+ +T+ + TGD+G GR+
Sbjct: 398 QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRI 457
Query: 539 K--IIDRKKNIF 548
K II KN +
Sbjct: 458 KDLIIIYGKNHY 469
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 8e-31
Identities = 87/534 (16%), Positives = 160/534 (29%), Gaps = 134/534 (25%)
Query: 73 PDHPEIGTTHDNFVRAVDTFRD---YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSG 129
H + + + ++ DG +T+ + V
Sbjct: 18 GSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAIT---LTWSQLYRRTLNVAQE 74
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP---DAVKYIVNHASV 186
L G S G + + E+++ I+VPL G + +++ +S
Sbjct: 75 LSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSP 133
Query: 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSN 246
A+ ++ ++ ++ P +I +D L N
Sbjct: 134 VAILTTSSAVDDVVQHVARRPGESPPSIIE-VDL-------------------LDLDAPN 173
Query: 247 LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA------GATLGTKFYPSDVY 300
F + A + YTSG+T TP G V+SH N+ + A P+
Sbjct: 174 GYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSAL 233
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAAL-RPTVFCSVPRLYNRIYA 359
+S+LP H M + G+ G L ++ L RP + L +
Sbjct: 234 VSWLPFYH-------DMGLVIGICAPILGGYPAVLTSPVSFLQRPARW---MHLMASDFH 283
Query: 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG-----GRVR 414
++A N A+ L + D G +
Sbjct: 284 AFSAA-----------PNFAF------------------ELAARRTTDDDMAGRDLGNIL 314
Query: 415 FMGSGASPLSPDVLD-FLKIC--FGGR---VTEGYGMTETSCLISQLDEG---------- 458
+ SG+ + + F F + + Y + E + ++ G
Sbjct: 315 TILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDT 374
Query: 459 DNLSGH---------------VGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG 500
++LS P + +++VD + CP GEI V G
Sbjct: 375 ESLSAGHAKPCAGGGATSLISYMLP-RSPIVRIVD-SDTC-----IECPDGTVGEIWVHG 427
Query: 501 PLIFKGYYKDEIQTKEVI-----------DEDGWFHTGDIGMWIPGGRLKIIDR 543
+ GY++ +++ E W TGD G G++ II R
Sbjct: 428 DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 2e-12
Identities = 44/261 (16%), Positives = 77/261 (29%), Gaps = 32/261 (12%)
Query: 246 NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305
NL P P D + + GTTG PK V + A ++ G
Sbjct: 82 NLVPQGLP-ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSG------------YQ 128
Query: 306 LAHIYERANQVMTVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364
N + + +G VG + + M V R + G T+
Sbjct: 129 HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRS---LSEGDTAT 185
Query: 365 VRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLV-FNKIKDKLGGRVRFMGSGASPL 423
VR + L P+ L+ ++ ++ + + G + L
Sbjct: 186 VRKYTHHLVDQVQNTLMNQDIRFLVT--TPPVLRELLKRPEVVLQMKQSLAQITLGGTEL 243
Query: 424 SPDVLDFL--KICFGGRVTEGYGMTETSCLISQL-DEGDNLSGHVGSPNAACEIKLVDVP 480
+ D + F+ +I + YG T + L ++ S + +VD
Sbjct: 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVD-S 302
Query: 481 EMNYTSEDQPCP---RGEICV 498
Q RG + V
Sbjct: 303 I-----TAQTVEYGERGNVIV 318
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
++ + +Q LP T + + S+ P+D A I YTSGTT
Sbjct: 562 AACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPAT--AIDPNDPAYIMYTSGTT 619
Query: 269 GTPKGAVLSHGNLI 282
G PKG + +H N+
Sbjct: 620 GKPKGNITTHANIQ 633
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 4e-08
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
R+++ + I ++ V+I + + +NL P K D+A + YTSGTT
Sbjct: 137 ARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHV--PSKSTDLAYVIYTSGTT 194
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
G PKG +L H + D
Sbjct: 195 GNPKGTMLEHKGISNLKVFFENSLNVTEKDR 225
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 53/362 (14%), Positives = 101/362 (27%), Gaps = 119/362 (32%)
Query: 220 DQIPSLPITTGVQIL------TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273
+ + + ++L NL +Q S++ P + A + YTSG+TGTPKG
Sbjct: 135 NNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPE--NLDAYLLYTSGSTGTPKG 192
Query: 274 AVLSHG---NLIASVAGATLGT-----KFYPSDVYISYLPL---AHIYERANQVMTVYSG 322
+S + + + ++ HI E + G
Sbjct: 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE---MFLAWRFG 249
Query: 323 VAVGFYQGDNMKLMDDMAAL----RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378
+ G+ + ++DD+ T VP S + +G + E
Sbjct: 250 LCA--VTGERLSMLDDLPRTFRELGVTHAGIVP-----------SLLDQTGLVPEDA--- 293
Query: 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
P + ++G G ++P
Sbjct: 294 --------------PH------------------LVYLGVGGEKMTPRTQQIWSSSDRVA 321
Query: 439 VTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR--- 493
+ YG TE + C ++ + +G P ++ ++ +
Sbjct: 322 LVNVYGPTEVTIGCSAGRILPDSDTR-CIGHPLGDSVAHVLA------PGSNEHVKKGMA 374
Query: 494 GEICVRGPLIFKGY-----------------YKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
GE+ + G L+ GY Y+ TGDI
Sbjct: 375 GELVIEGSLVANGYLNRPDAKGFCDINGRKMYR----------------TGDIVRMDADS 418
Query: 537 RL 538
+
Sbjct: 419 SI 420
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
+Q ++ LL ++ K + I YTSG+TG PKG +S NL
Sbjct: 116 QQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQ 169
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
G+ + +L + S +P D +A I ++SGTTG PK +H I +
Sbjct: 139 NGLPCVPVRHLPAAPASVARP--CFAADQIAYINFSSGTTGRPKAIACTHAG-ITRLCLG 195
Query: 289 TLGTKFYPSDV 299
F P
Sbjct: 196 QSFLAFAPQMR 206
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 8e-07
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 221 QIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN 280
+ LP+ + + + P K D+ I YTSG+TG PKG +++
Sbjct: 109 TVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 281 LI 282
L+
Sbjct: 169 LV 170
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
++ + V + + + K DD I +TSGTTG PKG +SH NL+
Sbjct: 114 TIEGISLVSLSEIESAKLAE-MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 59/448 (13%), Positives = 129/448 (28%), Gaps = 115/448 (25%)
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNM--KLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
HI + V + + M K +++ LR Y + + I +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE--VLRIN--------YKFLMSPIKTEQ 102
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWD--RL-VFNKIKDKL-----GGRVRF-- 415
R + Y ++ + + ++ RL + K++ L V
Sbjct: 103 RQPSMMTRM-----YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 416 M-GSGASPLSPDVLDFLKI--CFGGRV---TEGYGMTETSCLISQLDEGDNLSGHVGSPN 469
+ GSG + ++ DV K+ ++ + + L L + PN
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQI-DPN 212
Query: 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK-----DEIQTKEVIDEDGWF 524
++ S +R L K Y +Q + + F
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAE-------LRRLLKSKPYENCLLVLLNVQNAKAWNA---F 262
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGE---YIAAEKIENVYAK-------CKFVGQ- 573
++ ++ + R K + +I+ + K++
Sbjct: 263 ---NLSC-----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 574 --------CFVYGDSFNSALVAIVS-VDQDALKAWAASEGIQYENLEQLCNDPRARAAVL 624
+ N ++I++ +D L W + ++ N ++L +
Sbjct: 315 PQDLPREVL-----TTNPRRLSIIAESIRDGLATW---DNWKHVNCDKL------TTIIE 360
Query: 625 ADMDSLGREAQLRGFE----FVKAV-----TLVL--------EPFTVENGLLTPTFKIKR 667
+ ++ L + F+ F + L L + V N L + K+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 668 PQAKQYFAKAIADMYAELSRSDPSPNTL 695
P+ I +Y EL + L
Sbjct: 421 PKESTIS---IPSIYLELKVKLENEYAL 445
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 695 | |||
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.31 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.21 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.83 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.82 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.64 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 92.2 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 92.09 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 89.94 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 80.44 |
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-82 Score=703.26 Aligned_cols=503 Identities=20% Similarity=0.244 Sum_probs=420.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..|+.++|.++++++||++|+.+. + +++||+||+++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 469999999999999999999753 2 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-----hHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCce
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
|+++|+++||+++.++.+++.+++++++++++|++.... ..+......++.++.+++.++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 999999999999999999999999999999999987532 12222222345555565544311
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHH
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (695)
.+.++..... .+.+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.+++
T Consensus 162 --~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 0111111111 1112234578999999999999999999999999999998887777888999999999999999999
Q ss_pred HH--HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Q 005468 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (695)
Q Consensus 313 ~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (695)
.. .+.+++.|+++++.+ +++..+++.|+++++|++.++|+++..+++.....
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 293 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------- 293 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------
Confidence 75 677899999999987 79999999999999999999999999887642110
Q ss_pred CCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCC
Q 005468 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSP 468 (695)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p 468 (695)
....++||.+++||+++++++.+++.+.+|++++++||+||++..++..... ....+++|+|
T Consensus 294 -----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p 356 (539)
T 1mdb_A 294 -----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP 356 (539)
T ss_dssp -----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred -----------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence 0011589999999999999999999998999999999999976433321111 1235789999
Q ss_pred ccC-cEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCe
Q 005468 469 NAA-CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (695)
Q Consensus 469 ~~~-~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ 547 (695)
+++ .+++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.|..+|||+|||+|++|+||+|+|+||+||+
T Consensus 357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ 432 (539)
T 1mdb_A 357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432 (539)
T ss_dssp SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccce
Confidence 975 5899999 6677777776 8999999999999999999999999988999999999999999999999999999
Q ss_pred eecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHH
Q 005468 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVL 624 (695)
Q Consensus 548 ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 624 (695)
||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.... .+ .
T Consensus 433 ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~~-----------------~ 485 (539)
T 1mdb_A 433 INR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------PK-----------------A 485 (539)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------CC-----------------H
T ss_pred EEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------CC-----------------H
Confidence 996 999999999999999999999999999653 45789999987421 11 4
Q ss_pred HHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHHh
Q 005468 625 ADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAE 684 (695)
Q Consensus 625 ~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~~ 684 (695)
++|++++++..|+.|++|+.|++++++| +|++||++|++|++.|.++|+++|++
T Consensus 486 ~~l~~~l~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 486 AELKAFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp HHHHHHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhCCCCcccCCCEEEEeccCC------CCCCcCEeHHHHHHHHHHHHhccccC
Confidence 5666777644599999999999999999 99999999999999999999999974
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-80 Score=694.11 Aligned_cols=502 Identities=25% Similarity=0.344 Sum_probs=424.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+...|+.++|.++++++||++|+.+. ++. +++||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 34579999999999999999999763 221 56999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|++++|+++.++.+++.+++++++++++|++....+.+....... .++ ++.++... .....
T Consensus 92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-----------~~~~~ 158 (536)
T 3ni2_A 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVK-VMCVDSAP-----------DGCLH 158 (536)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCE-EEESSCCC-----------TTCEE
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cce-EEEecCCC-----------CCccC
Confidence 999999999999999999999999999999999999988776665543222 233 44444321 12356
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc----ccccCCCcEEEEeCChhhHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~ 311 (695)
+.++...... ..+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++.+|++|.++
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 159 FSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp THHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred HHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 6776654433 22344567899999999999999999999999999988765543 356789999999999999999
Q ss_pred HHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Q 005468 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (695)
Q Consensus 312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (695)
+.. .+.++..|+++++.+ +++..+++.|+++++|++.++|+++..+.+...
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 290 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--------------------------- 290 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC---------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc---------------------------
Confidence 976 567899999999887 799999999999999999999999998865210
Q ss_pred CCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCCCCC
Q 005468 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDNLSG 463 (695)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~-----~~~~~~~~ 463 (695)
......++||.+++||+++++++.+++++.+ +++++++||+||++++++.. .+.+...+
T Consensus 291 ---------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 355 (536)
T 3ni2_A 291 ---------------LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG 355 (536)
T ss_dssp ---------------GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred ---------------cccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence 0011125899999999999999999999998 89999999999998765433 22335678
Q ss_pred CcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEec
Q 005468 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (695)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (695)
++|.|+++++++|+|++++..++.|+ .|||+|+|++++.|||++|+.|.+.|+.+|||+|||+|++|+||+++|+||
T Consensus 356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 432 (536)
T 3ni2_A 356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR 432 (536)
T ss_dssp CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence 99999999999999977788888887 899999999999999999999999999999999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005468 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRAR 620 (695)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (695)
+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++. ...
T Consensus 433 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~~-------------- 489 (536)
T 3ni2_A 433 LKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS--------QAT-------------- 489 (536)
T ss_dssp CSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC--------------
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC--------CCC--------------
Confidence 9999998 899999999999999999999999998543 46789999987631 111
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 621 AAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 621 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|+++|.+
T Consensus 490 ---~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 490 ---EDEIKQYIS-KQVIFYKRIKRVFFIEAIP------KAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ---HHHHHHHHH-TTSCGGGCCSEEEECSCCC------BCTTSCBCHHHHHTC---
T ss_pred ---HHHHHHHHH-HhccCCccccEEEEEecCC------CCCCCCeeHHHHHHHhcc
Confidence 456677776 7899999999999999999 999999999999988763
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-80 Score=692.27 Aligned_cols=509 Identities=23% Similarity=0.291 Sum_probs=426.4
Q ss_pred CCCCHHH-HHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 77 EIGTTHD-NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 77 ~~~tl~~-~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
...|+.+ +|.++++++ |++|+.+. ++ .+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 94 (548)
T 2d1s_A 23 GSAGTQLRKYMERYAKL-GAIAFTNA---VT----GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV 94 (548)
T ss_dssp SCHHHHHHHHHHHHHHH-TCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CcCcHHHHHHHhhhccc-CCceEEEc---CC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence 3468999 899999999 99999753 21 156999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|+++||+++.++.+++.+++++++++++|++......+......++....++.++.... .. ....
T Consensus 95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ 165 (548)
T 2d1s_A 95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-------YR--GYQC 165 (548)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-------BT--TBCB
T ss_pred HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-------cc--cccc
Confidence 99999999999999999999999999999999999998877766554444444455665543210 00 1235
Q ss_pred HHHHHhccccCCCCCCCCC-----C-CCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc---cccCCCcEEEEeCCh
Q 005468 236 YSNLLSQGRSNLQPFSPPK-----P-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPL 306 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl 306 (695)
|+++...+.....+..... + +|+++|+|||||||.||||++||+++.+.+...... +++.++|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 6776654321101111122 4 899999999999999999999999999988877665 678899999999999
Q ss_pred hhHHHHHHH-HHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 005468 307 AHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (695)
Q Consensus 307 ~h~~~~~~~-~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (695)
+|.+++... +.++ .|+++++.+ +++..+++.|+++++|+++++|+++..+.+...
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 302 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL---------------------- 302 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC----------------------
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc----------------------
Confidence 999999874 4556 999999877 799999999999999999999999998865200
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCCCCCC
Q 005468 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (695)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (695)
. .....+++|.+++||+++++++.+++.+.+ ++.++++||+||++++++.........+
T Consensus 303 ------------~--------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 362 (548)
T 2d1s_A 303 ------------L--------NKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG 362 (548)
T ss_dssp ------------G--------GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred ------------c--------ccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence 0 001115899999999999999999999998 6889999999999877766544456778
Q ss_pred CcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEec
Q 005468 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (695)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (695)
++|+|+|+++++|+|++++..++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+++|+||
T Consensus 363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 439 (548)
T 2d1s_A 363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439 (548)
T ss_dssp CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence 99999999999999977788888776 899999999999999999999999998899999999999999999999999
Q ss_pred CCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHH
Q 005468 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRAR 620 (695)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (695)
+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|+++++. ..+
T Consensus 440 ~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~~-------------- 496 (548)
T 2d1s_A 440 LKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NMT-------------- 496 (548)
T ss_dssp GGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC--------------
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CCC--------------
Confidence 9999997 999999999999999999999999999653 35789999987631 111
Q ss_pred HHHHHHHHHHHHhcCCCCcceee-EEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHH
Q 005468 621 AAVLADMDSLGREAQLRGFEFVK-AVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADM 681 (695)
Q Consensus 621 ~~i~~~l~~~~~~~~l~~~~~p~-~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~l 681 (695)
.++|+++++ ++|+.|++|+ .|++++++| +|++||++|++|++.|++.|++|
T Consensus 497 ---~~~l~~~~~-~~l~~~~~p~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 497 ---EKEVMDYVA-SQVSNAKRLRGGVRFVDEVP------KGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp ---HHHHHHHHH-TTSCGGGSCTTCEEECSSCC------BCTTSCBCHHHHHHHHHSCC---
T ss_pred ---HHHHHHHHH-HhccccccccccEEEccCCC------CCCcchhHHHHHHHHHhhhhhcC
Confidence 355666775 7899999999 999999999 99999999999999999988875
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-80 Score=692.23 Aligned_cols=508 Identities=23% Similarity=0.307 Sum_probs=399.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCc--cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGT--VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
+..|+.++|.++++++||++|+.+. ++. .+..+++||+||.++++++|++|++.|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 93 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 4579999999999999999999886 421 23346799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (695)
+|||+++|+++||+++.++.+++.+++++++++++|++......+........ ++.+++++.. ..
T Consensus 94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~ 158 (549)
T 3g7s_A 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE--------------VN 158 (549)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS--------------SS
T ss_pred HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC--------------Cc
Confidence 99999999999999999999999999999999999999988777766655444 5566665531 23
Q ss_pred eHHHHHhccccCCCCCCCCCC-CCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHH
Q 005468 235 TYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (695)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~ 313 (695)
++.++...+.... +.....+ +|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~ 237 (549)
T 3g7s_A 159 SLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG 237 (549)
T ss_dssp CHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHH
T ss_pred CHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHH
Confidence 5667665544322 2223334 8999999999999999999999999999998887778899999999999999999998
Q ss_pred HHHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 314 NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 314 ~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
..+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+.......
T Consensus 238 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------- 291 (549)
T 3g7s_A 238 LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK-------------------------- 291 (549)
T ss_dssp HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------------------
T ss_pred HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------------------
Confidence 8778899999999887 7999999999999999999999999998774321100
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH----hC---CccccccccccccccccccCCCC-CCCCC
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG---GRVTEGYGMTETSCLISQLDEGD-NLSGH 464 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~----~g---~~v~~~YG~TE~~~~~~~~~~~~-~~~~~ 464 (695)
....+++|.+++||+++++++.+.+.+. ++ +++++.||+||++++++...... ...++
T Consensus 292 --------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 357 (549)
T 3g7s_A 292 --------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTT 357 (549)
T ss_dssp --------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTS
T ss_pred --------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCC
Confidence 0011589999999999999999999887 66 88999999999998777655443 56789
Q ss_pred cCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC--CCC--eeecccEEEEecCCcEEE
Q 005468 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID--EDG--WFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 465 vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~--~~g--w~~TGDlg~~~~dG~l~i 540 (695)
+|.|+++++++|+|++++..++.|+ .|||+|+|++++.|||++|+.|++.|. .+| ||+|||+|++|+||+|+|
T Consensus 358 ~G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~ 434 (549)
T 3g7s_A 358 QGVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF 434 (549)
T ss_dssp CCEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEE
T ss_pred ccccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEE
Confidence 9999999999999988888888887 899999999999999999999999983 677 999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDP 617 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (695)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++ ++.++|+|++.++.. ...
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~------~~~------------ 495 (549)
T 3g7s_A 435 QDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR------GKV------------ 495 (549)
T ss_dssp EEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT------TSC------------
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc------CcC------------
Confidence 9999999997 899999999999999999999999999654 467899999886410 001
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 618 RARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 618 ~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
..++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.+.+.
T Consensus 496 -----~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 496 -----DEEDIIEWVR-ERISGYKRVREVEFVEELP------RTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp -----CHHHHHHHHH-TTCC-----CCCCEEEECC-------------------------
T ss_pred -----CHHHHHHHHH-HhccCcccceEEEEeccCC------CCCCcCEeHHHHHHHhhcc
Confidence 1456677776 7899999999999999999 9999999999999988764
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-80 Score=693.93 Aligned_cols=510 Identities=18% Similarity=0.242 Sum_probs=411.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
..++..+++|+++|+++||++|+.+. +.. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 35566679999999999999999875 322 34578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch--hHHHhcccCCCCc-eEEEEECCCCCCCCCCCcCCCce
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL--NSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
|||+++|+++||+++.++.+++.+++++++++++|++.+.. ..+......++.+ ..++.++... ...
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 198 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV----------LEG 198 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC----------CTT
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc----------ccc
Confidence 99999999999999999999999999999999999987654 4554444444444 4555555321 112
Q ss_pred EeeHHHHHhccccCCCCC---CCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhH
Q 005468 233 ILTYSNLLSQGRSNLQPF---SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 309 (695)
+.++.+.+.........+ ....++|+++|+|||||||.||||+++|.+++..+.......++.+++++++.+|++|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (580)
T 3etc_A 199 WIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWG 278 (580)
T ss_dssp CEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTST
T ss_pred cccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHH
Confidence 356777665443322111 24678999999999999999999999999998888776666788999999999999999
Q ss_pred HHHHH-HHHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 005468 310 YERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (695)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (695)
.+.+. .+.++..|+++++.+ +++..+++.|+++++|+++++|++++.|.+..
T Consensus 279 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------------ 334 (580)
T 3etc_A 279 KCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------------ 334 (580)
T ss_dssp HHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------------
T ss_pred HHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------------
Confidence 88876 567899999998874 79999999999999999999999998876410
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCc
Q 005468 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV 465 (695)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (695)
......++||.+++||+++++++.++|.+.+|++++++||+||++..++.........+++
T Consensus 335 -------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~ 395 (580)
T 3etc_A 335 -------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSI 395 (580)
T ss_dssp -------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCC
T ss_pred -------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCcc
Confidence 0001115899999999999999999999999999999999999987776665556788999
Q ss_pred CCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeC-----CccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEE
Q 005468 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG-----PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g-----~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i 540 (695)
|+|+|+++++|+| +++..++.|+ .|||+|+| ++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|
T Consensus 396 G~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~ 470 (580)
T 3etc_A 396 GKPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWF 470 (580)
T ss_dssp BEECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEE
T ss_pred ccCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEE
Confidence 9999999999999 5677778776 89999997 789999999999999999 699999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDP 617 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (695)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++ ++.++|+|++.++. . .+
T Consensus 471 ~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~----------~--------~~- 530 (580)
T 3etc_A 471 VGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY----------T--------PS- 530 (580)
T ss_dssp EEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----------C--------CC-
T ss_pred EecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC----------C--------CC-
Confidence 9999999997 799999999999999999999999999653 36788999988742 0 01
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 618 RARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 618 ~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
+.+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|+++++++
T Consensus 531 ---~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 531 ---DSLKNELQDHVK-NVTAPYKYPRIIEFVPELP------KTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp ---HHHHHHHHHHHH-HHSCGGGCCSEEEEECC---------------------------
T ss_pred ---HHHHHHHHHHHH-hhCCCccCCeEEEEeCCCC------CCCCcCCcHHHHHhHhhcC
Confidence 233566777776 6899999999999999999 9999999999999998753
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-80 Score=692.16 Aligned_cols=502 Identities=23% Similarity=0.292 Sum_probs=390.2
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..|+.++|.++++++||++|+.+. +. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 21 2346799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|+++||+++.++.+++.+++++++++++|++......+......++.++.+++++.... . ....++
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~ 161 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP--------E--GYLAYE 161 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC--------T--TCEEHH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC--------c--ccccHH
Confidence 999999999999999999999999999999999998887776666556666777776654221 0 124566
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhh--ccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
++...... .....++++++|+|||||||.||||++||++++...... ...+++.++|++++++|++|.+++...
T Consensus 162 ~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 237 (541)
T 1v25_A 162 EALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 237 (541)
T ss_dssp HHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHH
T ss_pred HHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHH
Confidence 66543221 134567899999999999999999999999998876653 344678899999999999999999777
Q ss_pred HHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 316 VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 316 ~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+......
T Consensus 238 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------- 289 (541)
T 1v25_A 238 YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------------- 289 (541)
T ss_dssp HHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------------
T ss_pred HHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------------
Confidence 88999999999976 599999999999999999999999999876432110
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----------CCC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLS 462 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----------~~~ 462 (695)
...+++|.+++||+++++++.++| +.+|++++++||+||++++++...... ...
T Consensus 290 --------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (541)
T 1v25_A 290 --------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 354 (541)
T ss_dssp --------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHH
T ss_pred --------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCcccccccc
Confidence 011589999999999999999999 667999999999999987766553321 134
Q ss_pred CCcCCCccCcEEEEeecCCCCCCCC-CCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEE
Q 005468 463 GHVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (695)
Q Consensus 463 ~~vG~p~~~~~v~i~d~~~~~~~~~-~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~ 541 (695)
+++|+|+|+++++|+| ++++.++. +. +.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++|+||+++|+
T Consensus 355 ~~~G~p~~~~~~~i~d-~~g~~~~~~~~--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~ 431 (541)
T 1v25_A 355 AKTGLPIPLVRLRVAD-EEGRPVPKDGK--ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIK 431 (541)
T ss_dssp TSCBEECTTCEEEEEC-TTSCBCCSSSC--CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred CCCCCcCCCcEEEEEC-CCCCCCCCCCC--cceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEe
Confidence 7899999999999999 55565553 22 27999999999999999999999999988999999999999999999999
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.... .
T Consensus 432 GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~------------- 488 (541)
T 1v25_A 432 DRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P------------- 488 (541)
T ss_dssp EESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----------------------------
T ss_pred ecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C-------------
Confidence 999999996 999999999999999999999999999654 46788999876211 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 619 ARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
-.++|++++++.+|+.|++|+.|++++++| +|++||++|++|++.|+++
T Consensus 489 ----~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 489 ----TPEELNEHLLKAGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp ----------------CCCTTTSCSBC--------------------CCTTHHHHSTTS
T ss_pred ----CHHHHHHHHHhccCccccCCcEEEEeCCCC------CCCccCeeHHHHHHHHHHh
Confidence 134455566533899999999999999999 9999999999999988654
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-80 Score=694.98 Aligned_cols=515 Identities=22% Similarity=0.286 Sum_probs=343.5
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
+..|+.++|.++++++||++|+.... ++. ..+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~--~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFT--DAH--IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEE--ETT--TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEee--ecC--CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 34799999999999999999986321 221 12579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|+++||+++.++.+++.+++++++++++|++......+.......+.++.+++++..... ....++
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 164 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM 164 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence 99999999999999999999999999999999999998888877776677777878877653211 123456
Q ss_pred HHHHhccccCC------CCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc---cccCCCcEEEEeCChh
Q 005468 237 SNLLSQGRSNL------QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLA 307 (695)
Q Consensus 237 ~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~ 307 (695)
.++........ .+.....++|+++|+|||||||.||||++||+++...+...... .++.++|++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 66654332211 11122345789999999999999999999999999887766554 5678999999999999
Q ss_pred hHHHHHHHHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 005468 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (695)
Q Consensus 308 h~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (695)
|.+++...+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+...
T Consensus 245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 300 (550)
T 3rix_A 245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------------------ 300 (550)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG------------------------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc------------------------
Confidence 9999988888999999999987 799999999999999999999999998865210
Q ss_pred HhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCc-cccccccccccccccccCCCCCCCCCc
Q 005468 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHV 465 (695)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (695)
......++||.+++||+++++++.+++.+.+++. ++++||+||+++.++.........+++
T Consensus 301 ------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 362 (550)
T 3rix_A 301 ------------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362 (550)
T ss_dssp ------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred ------------------ccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence 0011125899999999999999999999999875 899999999998887777767788999
Q ss_pred CCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCC
Q 005468 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (695)
Q Consensus 466 G~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (695)
|+|+|+++++|+|.+++..++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+++|+||+|
T Consensus 363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d 439 (550)
T 3rix_A 363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK 439 (550)
T ss_dssp EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence 999999999999987788888886 89999999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHH
Q 005468 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAA 622 (695)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (695)
|+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++.. .
T Consensus 440 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-------------------------~ 493 (550)
T 3rix_A 440 SLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT-------------------------M 493 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred heeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCC-------------------------C
Confidence 99997 899999999999999999999999998654 467888888876420 1
Q ss_pred HHHHHHHHHHhcCCCCcceee-EEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHH
Q 005468 623 VLADMDSLGREAQLRGFEFVK-AVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 682 (695)
Q Consensus 623 i~~~l~~~~~~~~l~~~~~p~-~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly 682 (695)
..++|+++++ .+|+.|+.|. .|++++++| +|++|||+|++|++.+.+....-+
T Consensus 494 ~~~~l~~~~~-~~l~~~~~~~~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~~~ 547 (550)
T 3rix_A 494 TEKEIVDYVA-SQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKAKKGGK 547 (550)
T ss_dssp -------------------------------------------------------------
T ss_pred CHHHHHHHHH-HhcccccccCCceEEEeecC------CCCCcceeHHHHHHHHHhhccccc
Confidence 1345566665 6788886655 699999999 999999999999999987654433
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-80 Score=684.12 Aligned_cols=498 Identities=19% Similarity=0.245 Sum_probs=414.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
.+...|+.++|.++++++||++|+.+. +. .+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 346789999999999999999999864 22 25799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (695)
+|||+++|+++||+++.++.+++.+++++++++++|++......+.......+....++.+.. ..
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE---------------HH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999998877666554433222111111100 01
Q ss_pred eHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH
Q 005468 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (695)
.+.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++..
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence 23343332222 22344567899999999999999999999999999999988888889999999999999999999988
Q ss_pred HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
.+.+++.|+++++.+ +++..+++.|+++++|++.++|+++..+.+....
T Consensus 229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------ 278 (517)
T 3r44_A 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF------------------------------ 278 (517)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH------------------------------
T ss_pred HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc------------------------------
Confidence 776666999999877 7999999999999999999999999988763111
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCCCCCcCCCccC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAA 471 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~ 471 (695)
.....+++|.+++||+++++++.+++.+. +++++++||+||+++.++..... ....+++|.|+++
T Consensus 279 ------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~ 345 (517)
T 3r44_A 279 ------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF 345 (517)
T ss_dssp ------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred ------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence 11112589999999999999999999987 99999999999998766554433 3567899999999
Q ss_pred cEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecC
Q 005468 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (695)
Q Consensus 472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~ 551 (695)
++++|+| +++...+.| .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+++|+||+||+||+
T Consensus 346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 418 (517)
T 3r44_A 346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS- 418 (517)
T ss_dssp EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-
T ss_pred eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEE-
Confidence 9999999 455544444 59999999999999999999999999 7999999999999999999999999999997
Q ss_pred CeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHH
Q 005468 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMD 628 (695)
Q Consensus 552 ~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 628 (695)
+|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|+..... .+ .++|+
T Consensus 419 ~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~~-----------------~~~l~ 472 (517)
T 3r44_A 419 GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------VS-----------------EQQIV 472 (517)
T ss_dssp TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------CC-----------------HHHHH
T ss_pred CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------CC-----------------HHHHH
Confidence 899999999999999999999999998653 34667777443311 11 34566
Q ss_pred HHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHH
Q 005468 629 SLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAI 678 (695)
Q Consensus 629 ~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i 678 (695)
++++ ++|+.|++|+.|++++++| +|++|||+|++|++.|.+++
T Consensus 473 ~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 473 EYCG-TRLARYKLPKKVIFAEAIP------RNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp HHHH-HHSCGGGSCSEEEECSCCC------BCTTCCBCHHHHHHHHGGGC
T ss_pred HHHH-HhCCCCCCCCEEEEECCCC------CCCCcCccHHHHHHHHHhhc
Confidence 6665 6899999999999999999 99999999999999997654
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-79 Score=679.52 Aligned_cols=492 Identities=26% Similarity=0.339 Sum_probs=412.7
Q ss_pred HHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcC
Q 005468 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162 (695)
Q Consensus 83 ~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 162 (695)
++|.+.++++||++++.... ++. +++||+||.++++++|++|+++|+++||+|+|+++|+++|++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~--~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET--AAG----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE--TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEec--CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 46888999999999998641 121 469999999999999999999999999999999999999999999999999
Q ss_pred CeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhc
Q 005468 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242 (695)
Q Consensus 163 ~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (695)
+++||+++.++.+++.+++++++++++|++......+......... .++.++.... ..+.+....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~ 142 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG 142 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence 9999999999999999999999999999998765544333222211 2333332110 112222221
Q ss_pred cccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-HHHHHHc
Q 005468 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYS 321 (695)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~ 321 (695)
. ..........++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++.. .+.+++.
T Consensus 143 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 221 (503)
T 4fuq_A 143 A-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221 (503)
T ss_dssp S-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred C-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence 1 1122334567899999999999999999999999999999988888889999999999999999999765 6678899
Q ss_pred CcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 005468 322 GVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (695)
Q Consensus 322 G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l 400 (695)
|+++++.+ +++..+++.++ ++|+++++|+++..+++...
T Consensus 222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------------- 261 (503)
T 4fuq_A 222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------------- 261 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------------
T ss_pred CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------------
Confidence 99998877 79999999998 89999999999998865210
Q ss_pred HHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecC
Q 005468 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480 (695)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~ 480 (695)
......+++|.+++||+++++++.+.|.+.+|+++++.||+||++..++.....+...+++|+|+++++++|+|++
T Consensus 262 ----~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 262 ----LTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp ----CSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred ----ccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence 0011125899999999999999999999999999999999999987766544455677899999999999999988
Q ss_pred CCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHH
Q 005468 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEK 560 (695)
Q Consensus 481 ~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~ 560 (695)
++..++.|+ .|||+|+|++++.|||++|+.|.+.|..+|||+|||+|++|+||+++|+||+||+||+ +|++|+|.|
T Consensus 338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~e 413 (503)
T 4fuq_A 338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKE 413 (503)
T ss_dssp TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHH
T ss_pred CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHH
Confidence 888888887 8999999999999999999999999988999999999999999999999999999997 899999999
Q ss_pred HHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCC
Q 005468 561 IENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLR 637 (695)
Q Consensus 561 IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~ 637 (695)
||++|.+||+|.+|+|++.++ ++.++|+|+++++. ..+ .++|+++++ ++|+
T Consensus 414 IE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~--------~~~-----------------~~~l~~~l~-~~L~ 467 (503)
T 4fuq_A 414 IESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA--------TID-----------------EAQVLHGLD-GQLA 467 (503)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC-----------------HHHHHHHHB-TTBC
T ss_pred HHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC--------CCC-----------------HHHHHHHHH-hhcc
Confidence 999999999999999998643 46788999987632 111 345666665 7899
Q ss_pred CcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 638 GFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 638 ~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.|++|+.|++++++| +|++||++|++|++.|++
T Consensus 468 ~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 468 KFKMPKKVIFVDDLP------RNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp GGGCCSEEEEESCCC------BCTTSCBCHHHHHHHTTT
T ss_pred cCCCCCEEEEECCCC------CCcccceeHHHHHHHHHH
Confidence 999999999999999 999999999999998864
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-79 Score=686.42 Aligned_cols=500 Identities=17% Similarity=0.206 Sum_probs=338.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.++++++||++|+.+. . +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~-----~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG-----E----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET-----T----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC-----C----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 3478999999999999999999853 2 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-----hHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCc
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (695)
||+++|++++|+++.++.+++.+++++++++++|++.... ..+............++.++....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 9999999999999999999999999999999999987653 222223333445556666654211
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHH
Q 005468 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (695)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 311 (695)
...+.++.........+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 1345555544433223334567899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH--HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Q 005468 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (695)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (695)
+.. .+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+++......
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 303 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK----------------------- 303 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-----------------------
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-----------------------
Confidence 875 677899999999987 799999999999999999999999998876421100
Q ss_pred cCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-CCCCCcCC
Q 005468 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (695)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (695)
...++||.+++||+++++++.+++.+.+|+++++.||+||++..++...... ...+++|+
T Consensus 304 -------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~ 364 (544)
T 3o83_A 304 -------------------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364 (544)
T ss_dssp -------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred -------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence 0015899999999999999999999999999999999999876544332222 33468999
Q ss_pred Cc-cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCC
Q 005468 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (695)
Q Consensus 468 p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (695)
|+ ++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+++|+||+||
T Consensus 365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd 440 (544)
T 3o83_A 365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD 440 (544)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence 96 899999999 7777888886 899999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005468 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAV 623 (695)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (695)
+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+... .
T Consensus 441 ~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~--------------------------~ 493 (544)
T 3o83_A 441 QINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL--------------------------K 493 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC--------------------------C
Confidence 9996 999999999999999999999999998653 467888888765321 1
Q ss_pred HHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 624 LADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 624 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.++|++++++.+|+.|++|+.|++++++| +|++||++|++|++.|.+
T Consensus 494 ~~~l~~~~~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 494 AVVLRRHLMELGIAQYKLPDQIKLIESLP------LTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHhCCCCcccCCcEEEEeccCC------CCCCCCCcHHHHHHHHhh
Confidence 34455566534799999999999999999 999999999999998875
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-78 Score=692.40 Aligned_cols=523 Identities=17% Similarity=0.241 Sum_probs=427.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
..+++.++|.++++++||++|+.+. +...+..+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4578899999999999999999875 3323345789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch---------hHHHhcccCC--CCceEEEEECCCCCCCCCC
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEV--PTVRLIVVIGGIDDQIPSL 225 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~--~~l~~ii~~~~~~~~~~~~ 225 (695)
||+++|++++|+++.++.+++.++++++++++||+++... ..+.+..... ..++.+++++....... .
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~ 229 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID-W 229 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-C
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-c
Confidence 9999999999999999999999999999999999987542 2233333332 24567777764321110 0
Q ss_pred CcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHH-hhccccccCCCcEEEEeC
Q 005468 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISYL 304 (695)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~ 304 (695)
. . .....|++++..... ..+.....++|+++|+|||||||.||||+++|++++..+. .....+++.++|++++++
T Consensus 230 ~--~-~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~ 305 (652)
T 1pg4_A 230 Q--E-GRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTA 305 (652)
T ss_dssp C--B-TTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred c--C-CCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEcc
Confidence 0 0 123568887764322 1223345689999999999999999999999999887664 334457889999999999
Q ss_pred ChhhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHH
Q 005468 305 PLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (695)
Q Consensus 305 pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (695)
|++|++++.. .+.+|+.|+++++++ .++..+++.|+++++|+++++|++++.+.+.....
T Consensus 306 ~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------- 371 (652)
T 1pg4_A 306 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA-------------- 371 (652)
T ss_dssp CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG--------------
T ss_pred CCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc--------------
Confidence 9999999854 778999999999987 37899999999999999999999999886521100
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Ccccccccccccccccccc
Q 005468 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQL 455 (695)
Q Consensus 379 a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~ 455 (695)
.+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++..
T Consensus 372 --------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~ 425 (652)
T 1pg4_A 372 --------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITP 425 (652)
T ss_dssp --------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCC
T ss_pred --------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecC
Confidence 00111268999999999999999999999888 8999999999998766655
Q ss_pred CCC--CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeC--CccchhccCChhhhhcccC--CCCeeecccE
Q 005468 456 DEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTGDI 529 (695)
Q Consensus 456 ~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~TGDl 529 (695)
.+. ....+++|+|++|++++|+| +++..++.|+ .|||+|+| |+++.|||++++.+.+.|. .+|||+|||+
T Consensus 426 ~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDl 501 (652)
T 1pg4_A 426 LPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501 (652)
T ss_dssp CTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEE
T ss_pred CCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcE
Confidence 433 35678999999999999999 5666676665 89999999 7999999999999988762 4899999999
Q ss_pred EEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCC
Q 005468 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQ 606 (695)
Q Consensus 530 g~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~ 606 (695)
|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ ++.++|+|+++++. .
T Consensus 502 g~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~----------~ 570 (652)
T 1pg4_A 502 ARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE----------E 570 (652)
T ss_dssp EEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----------C
T ss_pred EEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCC----------C
Confidence 999999999999999999998 899999999999999999999999999643 46799999998631 0
Q ss_pred cccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHH
Q 005468 607 YENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADM 681 (695)
Q Consensus 607 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~l 681 (695)
.++ .+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.+.++++.+
T Consensus 571 --------~~~----~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~~ 626 (652)
T 1pg4_A 571 --------PSP----ELYAEVRNWVR-KEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGDTSNL 626 (652)
T ss_dssp --------CCH----HHHHHHHHHHH-HHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC----
T ss_pred --------CCH----HHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCCccchHHHHHHHHhCCCCCC
Confidence 011 23556677776 6799999999999999999 99999999999999998876443
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-78 Score=669.93 Aligned_cols=487 Identities=19% Similarity=0.237 Sum_probs=403.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
++|+.++|.++++++||++|+.+. +.. +++||+||.++++++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 478999999999999999999753 211 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEe--cccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~--~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|+++|+++||+++.++.+++.+++++++++++|+ +......+.... +.++ ++ .
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~---------------------~ 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGAR-II---------------------F 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCE-EE---------------------E
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccce-eE---------------------E
Confidence 9999999999999999999999999999999999 665544441111 1222 22 2
Q ss_pred HHHHHhccc----cCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcccccc--CCCcEEEEeCChhhH
Q 005468 236 YSNLLSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHI 309 (695)
Q Consensus 236 ~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~ 309 (695)
++++...+. ....+.....++|+++|+|||||||.||||++||+++.+.+......+++ .++|++++.+|++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 208 (504)
T 1t5h_X 129 LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208 (504)
T ss_dssp GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSH
T ss_pred ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhc
Confidence 222222110 11111234568999999999999999999999999999988877766777 789999999999999
Q ss_pred HHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005468 310 YERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (695)
Q Consensus 310 ~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~ 387 (695)
+++.. .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+......
T Consensus 209 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 266 (504)
T 1t5h_X 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------------- 266 (504)
T ss_dssp HHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------
T ss_pred chHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------
Confidence 99854 677899999999987 799999999999999999999999998876310000
Q ss_pred hcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCC
Q 005468 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467 (695)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 467 (695)
. ....++||.+++||+++++++.++|.+.+++.+++.||+||++. +.... ....+++|.
T Consensus 267 ----~--------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~ 325 (504)
T 1t5h_X 267 ----S--------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR--QPKTGTEMA 325 (504)
T ss_dssp ----C--------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--SCSSSSEEB
T ss_pred ----c--------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--CCCCCcccc
Confidence 0 00115899999999999999999999999999999999999943 22221 345688999
Q ss_pred CccCcEEEEeecCCC--CCCCCCCCCCcceEEEe-CCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecC
Q 005468 468 PNAACEIKLVDVPEM--NYTSEDQPCPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544 (695)
Q Consensus 468 p~~~~~v~i~d~~~~--~~~~~~~~~~~GEl~v~-g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (695)
|.++++++++|.++. ..++.|+ .|||+|+ |++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+|+||+
T Consensus 326 p~~~~~~~i~~~~~~~~~~~~~g~---~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~ 401 (504)
T 1t5h_X 326 PGFFSEVRIVRIGGGVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRV 401 (504)
T ss_dssp CCTTCCEEEECTTSCTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred CCCCCceeEEeccCCCCCcCCCCC---cceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcc
Confidence 999999999994432 5666665 8999999 9999999999999999999 7999999999999999999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005468 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARA 621 (695)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (695)
||+||+ +|++|+|.|||++|.+||+|.+|+|+|.++ ++.++|+|+++++. .++
T Consensus 402 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~~--------------- 457 (504)
T 1t5h_X 402 DDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TLS--------------- 457 (504)
T ss_dssp GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CCC---------------
T ss_pred cCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------CcC---------------
Confidence 999996 999999999999999999999999999754 46799999987631 111
Q ss_pred HHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHH
Q 005468 622 AVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675 (695)
Q Consensus 622 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~ 675 (695)
.++|++++++.+|+.|++|+.|++++++| +|++|||+|++|++.|+
T Consensus 458 --~~~l~~~~~~~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 458 --ADALDTFCRSSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQVS 503 (504)
T ss_dssp --HHHHHHHHHTSSCCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHC
T ss_pred --HHHHHHHHhhccCcccccceEEEEhhhCC------CCCCCCEeHHHHHHHhc
Confidence 45667777633899999999999999999 99999999999999874
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-78 Score=676.31 Aligned_cols=507 Identities=18% Similarity=0.228 Sum_probs=428.6
Q ss_pred CCCCHHHHHHHHHHh-----cCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChh
Q 005468 77 EIGTTHDNFVRAVDT-----FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPE 150 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~-----~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e 150 (695)
..+++.++|.+++++ +||++|+.+. ++. +..+++||+||.++++++|++|.+. |+++||+|+|+++|+++
T Consensus 36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 356778999999999 9999999875 321 2346799999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCC
Q 005468 151 WLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230 (695)
Q Consensus 151 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 230 (695)
|++++|||+++|+++||+++.++.+++.+++++++++++|++......+......++.++.++.+++... .
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 182 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--------D- 182 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC--------T-
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc--------c-
Confidence 9999999999999999999999999999999999999999998887777666666677777777654211 0
Q ss_pred ceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHH--HHHhhccccccCCCcEEEEeCChhh
Q 005468 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SVAGATLGTKFYPSDVYISYLPLAH 308 (695)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~h 308 (695)
....+.+++..... ..+.....++|+++|+|||||||.||||++||+ ++. ..... ..+++.++|++++++|++|
T Consensus 183 -~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 183 -GWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp -TSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred -ccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 12457776654332 122334578999999999999999999999999 544 44444 5678899999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 005468 309 IYERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (695)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (695)
.+++.. .+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+.. .
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~------------------- 316 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---L------------------- 316 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---T-------------------
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---c-------------------
Confidence 999885 677899999999875 69999999999999999999999999886520 0
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCC
Q 005468 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH 464 (695)
Q Consensus 385 ~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~ 464 (695)
.....+++|.+++||+++++++.++|.+.+|++++++||+||++..++.........++
T Consensus 317 ---------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 375 (570)
T 3c5e_A 317 ---------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGY 375 (570)
T ss_dssp ---------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTC
T ss_pred ---------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCc
Confidence 00011589999999999999999999998899999999999998766655444567789
Q ss_pred cCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEe-----CCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEE
Q 005468 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVR-----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539 (695)
Q Consensus 465 vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~-----g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~ 539 (695)
+|+|+++++++|+| +++..++.|+ .|||+|+ |++++.|||++|+.|.+.| .+|||+|||+|++|+||+|+
T Consensus 376 vG~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~ 450 (570)
T 3c5e_A 376 MGTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQ 450 (570)
T ss_dssp CCEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEE
T ss_pred ccccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEE
Confidence 99999999999999 6677888776 8999999 9999999999999999999 68999999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCC
Q 005468 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCND 616 (695)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (695)
|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++... .+
T Consensus 451 ~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~-----------------~~ 512 (570)
T 3c5e_A 451 FMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS-----------------HD 512 (570)
T ss_dssp EEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT-----------------SC
T ss_pred EEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC-----------------cc
Confidence 99999999996 899999999999999999999999999653 4678999998764200 01
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 617 PRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 617 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.+.+.++|+++++ .+|+.|++|+.|++++++| +|++||++|++|++.+.+
T Consensus 513 ---~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 513 ---PEQLTKELQQHVK-SVTAPYKYPRKIEFVLNLP------KTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp ---HHHHHHHHHHHHH-HHSCGGGSCSEEEEESCCC------BCTTCCBCHHHHHHHHTC
T ss_pred ---hHHHHHHHHHHHH-hhCccccCCcEEEEeccCC------CCCCcCCcHHHHHHHHHh
Confidence 1234567777776 6899999999999999999 999999999999987753
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-78 Score=685.38 Aligned_cols=533 Identities=18% Similarity=0.221 Sum_probs=427.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEccCChhHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
...++++++|.++++++||++|+.+. +...+..+++||+||.+++.++|++|+ ++|+++||+|+|+++|++||+++
T Consensus 79 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a 155 (663)
T 1ry2_A 79 GQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIIT 155 (663)
T ss_dssp CEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHH
T ss_pred CCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHH
Confidence 34578999999999999999999875 332344578999999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch---------hHHHhcccCCCCceEEEEECCCCCCCCCC
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPSL 225 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~ 225 (695)
+|||+++|++++|+++.++.+++.++++++++++||+++... ..+.+....++.++.+++++.........
T Consensus 156 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 235 (663)
T 1ry2_A 156 LLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF 235 (663)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc
Confidence 999999999999999999999999999999999999987643 23444445556677788776532100000
Q ss_pred CcCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHH-hhccccccCCCcEEEEeC
Q 005468 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISYL 304 (695)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~ 304 (695)
.......|.++...... ..+..+..++|+++|+|||||||.||||+++|++++..+. .....+++.++|++++++
T Consensus 236 ---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~ 311 (663)
T 1ry2_A 236 ---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAG 311 (663)
T ss_dssp ---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECS
T ss_pred ---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 01123568877654322 1233455789999999999999999999999999876654 334457889999999999
Q ss_pred ChhhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHH
Q 005468 305 PLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (695)
Q Consensus 305 pl~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (695)
|++|+++... .+.+|+.|+++++++ .++..+++.|+++++|+++++|++++.+.+...
T Consensus 312 ~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---------------- 375 (663)
T 1ry2_A 312 DIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD---------------- 375 (663)
T ss_dssp CTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT----------------
T ss_pred CcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc----------------
Confidence 9999999854 678999999999986 378999999999999999999999988754100
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Ccccccccccccccccccc
Q 005468 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQL 455 (695)
Q Consensus 379 a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~ 455 (695)
.. .+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++..
T Consensus 376 -------------~~-----------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~ 431 (663)
T 1ry2_A 376 -------------SY-----------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTP 431 (663)
T ss_dssp -------------TS-----------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEEC
T ss_pred -------------cc-----------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeecc
Confidence 00 00011258999999999999999999999888 8999999999998766655
Q ss_pred CC---CCCCCCCcCCCccCcEEEEeecCCCCCCCC-CCCCCcceEEEeC--CccchhccCChhhhhcccC--CCCeeecc
Q 005468 456 DE---GDNLSGHVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTG 527 (695)
Q Consensus 456 ~~---~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~-~~~~~~GEl~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~TG 527 (695)
.+ .....+++|.|++|++++|+|.+++..++. |+ .|||+|+| |+++.|||++|+.+.+.|. .+|||+||
T Consensus 432 ~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~---~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TG 508 (663)
T 1ry2_A 432 LAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA---EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG 508 (663)
T ss_dssp CTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC---EEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEE
T ss_pred CCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc---ceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcC
Confidence 43 235678999999999999999546666665 54 89999999 5899999999999988874 38999999
Q ss_pred cEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcC
Q 005468 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEG 604 (695)
Q Consensus 528 Dlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~ 604 (695)
|+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ ++.++|+|+++++.. +..
T Consensus 509 Dlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~--~~~--- 582 (663)
T 1ry2_A 509 DGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS--WST--- 582 (663)
T ss_dssp EEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------
T ss_pred CEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCc--ccc---
Confidence 99999999999999999999997 899999999999999999999999999654 468999999987431 000
Q ss_pred CCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHH
Q 005468 605 IQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADM 681 (695)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~l 681 (695)
. .++ ..+.+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.+.++++++
T Consensus 583 ~---------~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~~ 642 (663)
T 1ry2_A 583 A---------TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAGESDQL 642 (663)
T ss_dssp ---------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC------
T ss_pred c---------cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCCC------CCCccCchHHHHHHHHcCCCCCC
Confidence 0 000 00023566777776 6799999999999999999 99999999999999998765444
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-78 Score=670.26 Aligned_cols=492 Identities=20% Similarity=0.260 Sum_probs=331.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.++++++||++|+.+. + +++||+||.++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3479999999999999999999863 2 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (695)
||+++|+++||+++.++.+++.+++++++++++|++......+......++.++.++.+++... .+
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 140 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PF 140 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SC
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Ch
Confidence 9999999999999999999999999999999999999887775555566667777777654221 11
Q ss_pred HHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHH
Q 005468 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (695)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 316 (695)
.++.........+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 22222111222334456789999999999999999999999999999998888888999999999999999999998877
Q ss_pred HHH-HcCcEEeEecCChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 005468 317 MTV-YSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (695)
Q Consensus 317 ~~l-~~G~~~~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (695)
.++ ..|+++++..+++..+++.|+++++|+++++|+++..+++...
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------------- 267 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------------- 267 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------------
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------------
Confidence 654 4555555555899999999999999999999999999876310
Q ss_pred hhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCCCCCCCcCCCccCcEE
Q 005468 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEI 474 (695)
Q Consensus 396 ~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v 474 (695)
....+++|.++.||++ +..+.+.+.+ ++++++.||+||++++++.....+ ...++|+|++++++
T Consensus 268 -----------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~ 332 (509)
T 3ivr_A 268 -----------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFWRTV 332 (509)
T ss_dssp -----------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG-STTSCCEECTTCEE
T ss_pred -----------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc-CCCcccccCCCcEE
Confidence 0001589999999987 8888888888 899999999999998766554332 33459999999999
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecC--CCeeecCC
Q 005468 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK--KNIFKLAQ 552 (695)
Q Consensus 475 ~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~--~d~ikl~~ 552 (695)
+|+| +++..++.|+ .|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||+++|+||+ ||+||+ +
T Consensus 333 ~i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~ 406 (509)
T 3ivr_A 333 AVVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-G 406 (509)
T ss_dssp EEEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------
T ss_pred EEEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE-C
Confidence 9999 5677777776 89999999999999999999999999 5999999999999999999999999 999996 9
Q ss_pred eeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
|++|+|.+||++|.+||+|.+|+|++.++ ++.++|+|++.++.. ...++|++
T Consensus 407 G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~-------------------------~~~~~l~~ 461 (509)
T 3ivr_A 407 GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES-------------------------IAADALAE 461 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC-------------------------CCHHHHHH
Confidence 99999999999999999999999998654 457888988876420 11345666
Q ss_pred HHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
+++ ++|+.|++|+.|++++++| +|++|||+|++|++++++.
T Consensus 462 ~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 462 FVA-SLIARYKKPKHVVFVEALP------KDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ------------------------------------------------
T ss_pred HHH-hhCcccCCCcEEEEecCCC------CCCCCCccHHHHHHHHhhc
Confidence 665 7899999999999999999 9999999999999998764
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-77 Score=659.59 Aligned_cols=487 Identities=17% Similarity=0.192 Sum_probs=412.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChhHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
+|+.++|+++++++||++|+.+. + +++||+||+++++++|++|.+. |.++|++|+|+++|+++|++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47999999999999999999753 2 5699999999999999999885 888999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++.+++.+++++++++++|++....... .. .....+.+.
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~------~~---------------------~~~~~~~~~ 124 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA------VG---------------------QQIQTVSAE 124 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC------CC---------------------CSSCEEEHH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh------cc---------------------cccceecHh
Confidence 999999999999999999999999999999999975432110 00 112345666
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (695)
++...............++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 66654433222334457899999999999999999999999999999988887888999999999999999999888888
Q ss_pred HHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+++.|+++++.+ .++..+++.|+++++|+++++|+++..++....
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 253 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------------- 253 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------------
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------------
Confidence 999999999876 489999999999999999999999988764200
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-----CCCCCCcCC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSGHVGS 467 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~ 467 (695)
......+++|.+++||+++++++.+.+.+.+ +++++++||+||+++.++..... .....++|.
T Consensus 254 -----------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 254 -----------FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp -----------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred -----------cccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 0011125899999999999999999999998 89999999999998766643322 245567999
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC-CCC--eeecccEEEEecCCcEEEEecC
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-EDG--WFHTGDIGMWIPGGRLKIIDRK 544 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~-~~g--w~~TGDlg~~~~dG~l~i~GR~ 544 (695)
|+++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.|. .+| ||+|||+|++ +||+++|+||+
T Consensus 323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~ 397 (511)
T 3e7w_A 323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRL 397 (511)
T ss_dssp ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEES
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccc
Confidence 99999999999 5677788776 899999999999999999999999983 233 7999999999 59999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005468 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARA 621 (695)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (695)
||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|+++++.. . + ..
T Consensus 398 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~---------~---------~---~~ 455 (511)
T 3e7w_A 398 DFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF---------E---------K---EF 455 (511)
T ss_dssp SSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC---------S---------S---HH
T ss_pred cCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc---------c---------c---hh
Confidence 999997 999999999999999999999999998643 468999999886320 0 0 12
Q ss_pred HHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 622 AVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 622 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.++++
T Consensus 456 ~~~~~l~~~l~-~~L~~~~~P~~~~~v~~lP------~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 456 QLTSAIKKELA-ASLPAYMIPRKFIYQDHIQ------MTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp HHHHHHHHHHH-HHSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hhCchhhCCeeEEEeccCC------CCCCcCccHHHHHhHHhhh
Confidence 33566777775 6899999999999999999 9999999999999998864
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-77 Score=662.87 Aligned_cols=488 Identities=18% Similarity=0.221 Sum_probs=406.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
+|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47999999999999999999864 2 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (695)
+++|+++||+++.++.+++.+++++++++++|++...... ..+ .. ++. ...+.+
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~-~~-~~~------------------~~~~~~ 125 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP-VR-IVS------------------EDNLKD 125 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS-SE-EEE------------------THHHHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc-cc-eec------------------hhhhhh
Confidence 9999999999999999999999999999999997543210 000 00 110 001222
Q ss_pred HHhcc-ccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH
Q 005468 239 LLSQG-RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (695)
Q Consensus 239 ~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (695)
+.... ...+.+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 205 (512)
T 3fce_A 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205 (512)
T ss_dssp HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHH
T ss_pred hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHH
Confidence 22111 11122234457899999999999999999999999999999988888889999999999999999999988888
Q ss_pred HHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+++.|+++++.+ .++..+++.|+++++|++.++|+++..++....
T Consensus 206 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 254 (512)
T 3fce_A 206 SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------------- 254 (512)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------------
T ss_pred HHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------------
Confidence 999999999987 489999999999999999999999987754100
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC-----CCCCCcCC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (695)
......+++|.+++||+++++++.+++.+.+ ++++++.||+||+++.++...... ...+++|.
T Consensus 255 -----------~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (512)
T 3fce_A 255 -----------FSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323 (512)
T ss_dssp -----------CSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE
T ss_pred -----------ccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCcccc
Confidence 0011125899999999999999999999998 899999999999987766443322 45678999
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhccc---CCCCeeecccEEEEecCCcEEEEecC
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDRK 544 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (695)
|.++++++|+| +++..++.|+ .|||+|+||+++.|||++|+.|++.| +.+|||+|||+|++ +||+++|+||+
T Consensus 324 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~ 398 (512)
T 3fce_A 324 CKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRL 398 (512)
T ss_dssp ECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEG
T ss_pred ccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEeccc
Confidence 99999999999 6777777776 89999999999999999999999998 45779999999999 79999999999
Q ss_pred CCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHH
Q 005468 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARA 621 (695)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (695)
||+||+ +|++|+|.+||++|.+||+|.+|+|++.++ ++.++|+|++.+.. .. + ..
T Consensus 399 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~---------~~---------~---~~ 456 (512)
T 3fce_A 399 DFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHS---------FE---------K---EF 456 (512)
T ss_dssp GGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCC---------CS---------S---HH
T ss_pred CCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcc---------cc---------c---hh
Confidence 999997 999999999999999999999999998643 35789999987631 00 1 11
Q ss_pred HHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 622 AVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 622 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.|+++
T Consensus 457 ~~~~~l~~~l~-~~L~~~~~P~~~~~~~~lP------~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 457 KLTSAIKKELN-ERLPNYMIPRKFMYQSSIP------MTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp HHHHHHHHHHH-TTSCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHC-
T ss_pred hhHHHHHHHHH-hhCchhcCCeEEEEecccC------CCCCcChHHHHHHhhhhhc
Confidence 33556777776 7999999999999999999 9999999999999999864
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-76 Score=659.97 Aligned_cols=500 Identities=19% Similarity=0.245 Sum_probs=407.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
.++++.++|.++++ +||++|+.+. + +.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 44569999999999 9999999753 2 459999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCc-eEEEEECCCCCCCCCCCcCCCceEee
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
||+++|+++||+++.++.+++.+++++++++++|++......+.......+.+ ..+++++.... .+.....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 163 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRES--------EPRLAPL 163 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCB
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEeccccc--------ccccccc
Confidence 99999999999999999999999999999999999988776665544333334 45555543211 0001125
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHH-HHHHHhhccccccCCCcEEEEeCChhhHHHHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (695)
++++...... ..+.....++|+++|+|||||||.||||++||+++ .+........+++.++|++++++|++|.+++..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 242 (529)
T 2v7b_A 164 FEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242 (529)
T ss_dssp HHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHH
T ss_pred hhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHH
Confidence 6666553222 12233457899999999999999999999999999 666666656678899999999999999999876
Q ss_pred -HHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCC
Q 005468 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (695)
Q Consensus 315 -~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (695)
.+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+++...
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------- 293 (529)
T 2v7b_A 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN----------------------------- 293 (529)
T ss_dssp HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----------------------------
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----------------------------
Confidence 456899999999873 699999999999999999999999988764100
Q ss_pred CCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccC
Q 005468 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471 (695)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (695)
..... ..++|.+++||+++++++.+++.+.+|++++++||+||++.+++.........+++|+|+++
T Consensus 294 -~~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~ 360 (529)
T 2v7b_A 294 -LPARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG 360 (529)
T ss_dssp -CCCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTT
T ss_pred -ccccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCC
Confidence 00000 03799999999999999999999999999999999999976666555555677899999999
Q ss_pred cEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecC
Q 005468 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (695)
Q Consensus 472 ~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~ 551 (695)
++++|+| +++..++.|+ .|||+|+|++++.|||++++.|.+.| .+|||+|||+|++|+||+++|+||+||+||+
T Consensus 361 ~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~- 434 (529)
T 2v7b_A 361 YEIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV- 434 (529)
T ss_dssp CEEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC--
T ss_pred CEEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEE-
Confidence 9999999 6677788776 89999999999999999999999999 5899999999999999999999999999997
Q ss_pred CeeeechHHHHHHHhcCcCcceEEEEeeC--CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 552 ~G~~v~p~~IE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
+|++|+|.+||++|.+||+|.+|+|++.. .++.++|+|++.++. . .++ ...++|++
T Consensus 435 ~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~----------~--------~~~----~~~~~l~~ 492 (529)
T 2v7b_A 435 SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF----------A--------PSE----ILAEELKA 492 (529)
T ss_dssp ---CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC----------C--------CCH----HHHHHHHH
T ss_pred CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC----------C--------cch----hHHHHHHH
Confidence 89999999999999999999999999963 245789999987631 0 011 12456777
Q ss_pred HHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
+++ ++|+.|++|+.|++++++| +|++||++|++|++
T Consensus 493 ~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 493 FVK-DRLAPHKYPRDIVFVDDLP------KTATGKIQRFKLRE 528 (529)
T ss_dssp HHH-TTSCTTTSCSEEEEESCCC------BCTTSCBCHHHHHC
T ss_pred HHH-hhcchhhCCeEEEEeccCC------CCCccchhHHhHhh
Confidence 776 7999999999999999999 99999999999985
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-77 Score=675.38 Aligned_cols=478 Identities=18% Similarity=0.198 Sum_probs=319.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+...++.++|.++++++||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999863 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|+++||+++.++.+++.+++++++++++|++......+ .....++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~---------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------TGTTTLYVEDEAA---------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------CSSEEEECCC-------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------cCCcceeeecccc----------------
Confidence 99999999999999999999999999999999999987654322 2222222211100
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
.............++|+++|+|||||||.||||++||+++.+.+.. ...+++.++|++++++|++|..+....
T Consensus 200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 272 (570)
T 4gr5_A 200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL 272 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence 0001111233457899999999999999999999999999877655 445678899999999999998777778
Q ss_pred HHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+.+....
T Consensus 273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------------- 323 (570)
T 4gr5_A 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------------- 323 (570)
T ss_dssp HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------------
T ss_pred HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------------
Confidence 88999999999876 5899999999999999999999999988753110
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC----CCCCCCcCC
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (695)
..++||.+++||++++++..+.+.+.+ +++++++||+||++++++..... .....++|+
T Consensus 324 ----------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 387 (570)
T 4gr5_A 324 ----------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387 (570)
T ss_dssp ----------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred ----------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence 015899999999999999999988877 78999999999998766543321 234567999
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCC--------CeeecccEEEEecCCcEE
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED--------GWFHTGDIGMWIPGGRLK 539 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~--------gw~~TGDlg~~~~dG~l~ 539 (695)
|+++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|+++|..+ |||+|||+|++|+||+|+
T Consensus 388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~ 463 (570)
T 4gr5_A 388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE 463 (570)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence 99999999999 6677778776 89999999999999999999999998543 799999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCC
Q 005468 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCND 616 (695)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (695)
|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+...
T Consensus 464 ~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~-------------------- 522 (570)
T 4gr5_A 464 YVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA-------------------- 522 (570)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCC--------------------
Confidence 99999999997 999999999999999999999999999653 467889988765320
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHH
Q 005468 617 PRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQY 673 (695)
Q Consensus 617 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~ 673 (695)
....++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.
T Consensus 523 ----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 523 ----PPDAAELRRHVA-EALPAYMVPVECVPVDELP------RTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------------------------------------------------
T ss_pred ----CcCHHHHHHHHH-hhCccccCCcEEEEcccCC------CCCCcCcchHhhhcc
Confidence 011456667775 7899999999999999999 999999999999864
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-76 Score=664.15 Aligned_cols=476 Identities=19% Similarity=0.248 Sum_probs=398.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+...|+.++|.++++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34579999999999999999999753 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|+++||+++.++.+++.+++++++++++|++......+.... ....+..++...
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~----~~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ----FNGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC----CCSEEEECCCST----------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc----ccCceeeecchh----------------
Confidence 999999999999999999999999999999999999987655443221 111233322210
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
+ ... .......+..++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...
T Consensus 167 ---~-~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 167 ---I-KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---T-TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---h-ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0 000 00111234567899999999999999999999999999888877777889999999999999999999888
Q ss_pred HHHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCC
Q 005468 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (695)
Q Consensus 316 ~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (695)
+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+...
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------- 290 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------------- 290 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence 88999999999876 5889999999999999999999988765320
Q ss_pred CCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC---CCCCCcCCC
Q 005468 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVGSP 468 (695)
Q Consensus 392 ~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p 468 (695)
...++|.+++||+++++++.++|.+ .++++++||+||++.+++...... ...+++|+|
T Consensus 291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p 351 (563)
T 1amu_A 291 -----------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAP 351 (563)
T ss_dssp -----------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred -----------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence 0148999999999999999999877 478999999999987665443222 356789999
Q ss_pred ccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCC------CCeeecccEEEEecCCcEEEEe
Q 005468 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 469 ~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~------~gw~~TGDlg~~~~dG~l~i~G 542 (695)
+++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.|.. +|||+|||+|++|+||+|+|+|
T Consensus 352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G 427 (563)
T 1amu_A 352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427 (563)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence 9999999999 6677777776 8999999999999999999999999843 4699999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRA 619 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (695)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|+++.. .+
T Consensus 428 R~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~----------~~------------- 483 (563)
T 1amu_A 428 RIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH----------IP------------- 483 (563)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC----------CC-------------
T ss_pred cccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCC----------CC-------------
Confidence 99999997 999999999999999999999999998654 4578999988641 11
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHH
Q 005468 620 RAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYF 674 (695)
Q Consensus 620 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~ 674 (695)
.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.+
T Consensus 484 ----~~~l~~~l~-~~L~~y~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 484 ----LEQLRQFSS-EELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPEPD 527 (563)
T ss_dssp ----HHHHHHHHH-HHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCCCC
T ss_pred ----HHHHHHHHH-hhCchhhCCcEEEEecccC------CCCCcChhHHhcCCcc
Confidence 345666675 6899999999999999999 9999999999998754
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-76 Score=666.44 Aligned_cols=500 Identities=20% Similarity=0.246 Sum_probs=420.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.++++ ||++|+.+. + +.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999753 2 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch-----hHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCc
Q 005468 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (695)
||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...+....
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 9999999999999999999999999999999999987653 222222223445555555544211
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHH
Q 005468 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (695)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 311 (695)
..+.+....... .....+..++++++|+|||||||.||||+++|+++.+.+......+++.++|++++++|++|.++
T Consensus 163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 123444433222 22334556899999999999999999999999999999988888888999999999999999999
Q ss_pred HHH--HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Q 005468 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (695)
Q Consensus 312 ~~~--~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (695)
+.. .+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+.+.......
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------- 297 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES---------------------- 297 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC----------------------
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc----------------------
Confidence 875 677899999999877 7899999999999999999999999988764321100
Q ss_pred cCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-CCCCCcCC
Q 005468 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (695)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (695)
. ...+++|.+++||+++++++.++|.+.+|++++|.||+||++..++...... ....++|.
T Consensus 298 ----~--------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 359 (617)
T 3rg2_A 298 ----R--------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY 359 (617)
T ss_dssp ----T--------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred ----c--------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence 0 0115899999999999999999999999999999999999986554332221 23457899
Q ss_pred Cc-cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCC
Q 005468 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (695)
Q Consensus 468 p~-~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (695)
|+ ++++++|+| +++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++++||+|+|+||+||
T Consensus 360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd 435 (617)
T 3rg2_A 360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD 435 (617)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCC
Confidence 97 788999999 6778888887 899999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005468 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAV 623 (695)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (695)
+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+. ..
T Consensus 436 ~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~----------~~----------------- 487 (617)
T 3rg2_A 436 QINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP----------LR----------------- 487 (617)
T ss_dssp EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC----------CC-----------------
T ss_pred EEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCC----------CC-----------------
Confidence 9997 899999999999999999999999998543 4678899988752 11
Q ss_pred HHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHH
Q 005468 624 LADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 624 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~ 679 (695)
.+++++++++..|+.|++|..|++++++| +|++||++|++|++.+.+...
T Consensus 488 ~~~l~~~l~~~~lp~~~vP~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~ 537 (617)
T 3rg2_A 488 AVQVRRFLREQGIAEFKLPDRVECVDSLP------LTAVGKVDKKQLRQWLASRAS 537 (617)
T ss_dssp HHHHHHHHHTTTCCGGGSCSEEEECSCCC------BCTTSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccccCCcEEEEecccC------CCCCCCCcHHHHHHHHhcccc
Confidence 34556666544799999999999999999 999999999999999876644
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-76 Score=658.90 Aligned_cols=492 Identities=18% Similarity=0.184 Sum_probs=402.1
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
+.|+.++|++.++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|+++||+++.++.+++.+++++++++++|++.+....+ . ......+.
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-------~----------------------~~~~~~~~ 124 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-------E----------------------GISLVSLS 124 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-------T----------------------TSEEEEHH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-------c----------------------cCcccchh
Confidence 999999999999999999999999999999999986543211 1 11233444
Q ss_pred HHHhcccc--CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc--cccCCCcEEEEeCChhhHHHHH
Q 005468 238 NLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERA 313 (695)
Q Consensus 238 ~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~ 313 (695)
++...... .........++|+++|+|||||||.||||++||+++++.+...... +.+.+++++++.+|++|.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence 44322111 1122345678999999999999999999999999999887766554 6778999999999999999988
Q ss_pred HHHHHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Q 005468 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (695)
Q Consensus 314 ~~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (695)
..+.++..|+++++.+ .++..+++.+.++++|++.++|+++..+.....
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 257 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--------------------------- 257 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT---------------------------
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc---------------------------
Confidence 8888999999999876 388999999999999999999999987654100
Q ss_pred CCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-----CCCCC
Q 005468 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSG 463 (695)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-----~~~~~ 463 (695)
......+++|.+++||+++++++.+.+.+.+ +++++++||+||+++.++..... ....+
T Consensus 258 ---------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 322 (521)
T 3l8c_A 258 ---------------FCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL 322 (521)
T ss_dssp ---------------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred ---------------cccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence 0001115899999999999999999999988 89999999999998766544322 14567
Q ss_pred CcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhccc---CCCCeeecccEEEEecCCcEEE
Q 005468 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 464 ~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i 540 (695)
++|+|+++++++|+| +++..++.|+ .|||+|+||+++.|||++|+.|++.| +.+|||+|||+|++|+||+++|
T Consensus 323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~ 398 (521)
T 3l8c_A 323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398 (521)
T ss_dssp EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence 899999999999999 6677777776 89999999999999999999999998 5678999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC----CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCC
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF----NSALVAIVSVDQDALKAWAASEGIQYENLEQLCND 616 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~----~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (695)
+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..+ .+.++|+|++.++... ....
T Consensus 399 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~---------------~~~~ 462 (521)
T 3l8c_A 399 GGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKE---------------RFDR 462 (521)
T ss_dssp EEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGG---------------GCSS
T ss_pred eCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccc---------------cccc
Confidence 9999999997 899999999999999999999999998542 3578999998874210 0000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHH
Q 005468 617 PRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 617 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~ 679 (695)
...+.++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.|+++-.
T Consensus 463 ---~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~lP------~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 463 ---ELELTKAIKASVK-DHMMSYMMPSKFLYRDSLP------LTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp ---HHHHHHHHHHHSG-GGSCGGGSCSEEEECSSCC------BCTTSSBCHHHHHHHTC----
T ss_pred ---chhhHHHHHHHHH-hhCccccCCeEEEEecccC------CCCCcCccHHHHhhhhhcCCc
Confidence 1134677888886 7899999999999999999 999999999999999887543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-77 Score=709.51 Aligned_cols=518 Identities=24% Similarity=0.335 Sum_probs=345.4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
.+...|+.++|.++++++||++|+++. +.. +++||+||.++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~ 129 (979)
T 3tsy_A 57 IPNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLS 129 (979)
T ss_dssp CCTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHH
Confidence 345689999999999999999999863 211 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (695)
+|||+++|+++||+++.++.+++.+++++++++++|++....+.+....... .+ .++.+++.... . ......
T Consensus 130 ~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~-~-----~~~~~~ 201 (979)
T 3tsy_A 130 FLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESV-P-----IPEGCL 201 (979)
T ss_dssp HHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTS-C-----CCTTEE
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcccc-c-----CCcccc
Confidence 9999999999999999999999999999999999999987766555443322 22 24444432110 0 111235
Q ss_pred eHHHHHhcccc--CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc----ccccCCCcEEEEeCChhh
Q 005468 235 TYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAH 308 (695)
Q Consensus 235 ~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h 308 (695)
.|.++...... ...+.....++|+++|+|||||||.||||+++|+++++.+..... .+.+.++|++++++|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 281 (979)
T 3tsy_A 202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281 (979)
T ss_dssp EGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSS
T ss_pred cHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHH
Confidence 56665443322 112334567899999999999999999999999999988766543 356789999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 005468 309 IYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (695)
Q Consensus 309 ~~~~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (695)
.+++.. .+.++..|+++++.+ +++..+++.|+++++|++.++|+++..+.+....
T Consensus 282 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------- 338 (979)
T 3tsy_A 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET----------------------- 338 (979)
T ss_dssp HHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGG-----------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccc-----------------------
Confidence 999976 567899999999987 7999999999999999999999999888652110
Q ss_pred HhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCC
Q 005468 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDN 460 (695)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~-----~~~~~ 460 (695)
.....++||.+++||+++++++.+++.+.+ +++++++||+||++++++.. .+...
T Consensus 339 -------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 399 (979)
T 3tsy_A 339 -------------------EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV 399 (979)
T ss_dssp -------------------GTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred -------------------cCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence 001125899999999999999999999988 89999999999998765543 12235
Q ss_pred CCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEE
Q 005468 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 461 ~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i 540 (695)
..+++|.|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|
T Consensus 400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~ 476 (979)
T 3tsy_A 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFI 476 (979)
T ss_dssp CTTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred CCCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEE
Confidence 67899999999999999987788888887 899999999999999999999999999999999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDP 617 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (695)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.++..
T Consensus 477 ~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~--------------------- 534 (979)
T 3tsy_A 477 VDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSE--------------------- 534 (979)
T ss_dssp EEESCC--------------------------------------------------------------------------
T ss_pred ecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCC---------------------
Confidence 9999999997 899999999999999999999999998653 467899998776320
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHHhc
Q 005468 618 RARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 685 (695)
Q Consensus 618 ~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~~~ 685 (695)
...++|+++++ ++|+.|++|+.|++++++| +|++|||+|++|++.|.+.+...|...
T Consensus 535 ----~~~~~l~~~l~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~~~~~~~~~ 591 (979)
T 3tsy_A 535 ----LSEDDVKQFVS-KQVVFYKRINKVFFTESIP------KAPSGKILRKDLRAKLANGLGSGMASV 591 (979)
T ss_dssp -----------------------------------------------------------------CCH
T ss_pred ----CCHHHHHHHHH-HhcccccCCeEEEEeCCcC------cCCCCCeeHHHHHHHHHhhcCCccccc
Confidence 11345666665 7899999999999999999 999999999999999999988888654
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-76 Score=664.29 Aligned_cols=476 Identities=18% Similarity=0.147 Sum_probs=389.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
....|+.++|.++++++||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 35679999999999999999999864 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|+++||+++.++.+++.++++++++++++++....... ..+..+ .
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~----------------------~ 145 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCV----------------------P 145 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEE----------------------E
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCcee----------------------e
Confidence 99999999999999999999999999999999999765432211 011100 1
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHH
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
+.... ............++|+++|+|||||||.||||+++|+++.+.+.. ...+.+.++|++++++|++|++++...
T Consensus 146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 222 (620)
T 4dg8_A 146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI 222 (620)
T ss_dssp GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence 11000 000011223346899999999999999999999999999887765 445788899999999999999999988
Q ss_pred HHHHHcCcEEeEec---CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCC
Q 005468 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (695)
Q Consensus 316 ~~~l~~G~~~~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (695)
+.+++.|+++++.+ .++..+++.|+++++|+++++|+++..+.+...
T Consensus 223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------ 272 (620)
T 4dg8_A 223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------------ 272 (620)
T ss_dssp HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------------
T ss_pred HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------------
Confidence 99999999999864 689999999999999999999999998865200
Q ss_pred CCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC----CCCCCCcCC
Q 005468 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (695)
Q Consensus 393 ~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (695)
...++||.+++||++++++..+.+.+.+ +++++|+||+||++.+++..... ....+++|+
T Consensus 273 ---------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 337 (620)
T 4dg8_A 273 ---------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK 337 (620)
T ss_dssp ---------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE
T ss_pred ---------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCcee
Confidence 0015899999999999998888877665 78999999999998766543222 245678999
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCC-------CeeecccEEEEecCCcEEE
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-------GWFHTGDIGMWIPGGRLKI 540 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~-------gw~~TGDlg~~~~dG~l~i 540 (695)
|+++++++|+|.+....++.|. .|||||+|+++++|||++|+.|++.|..+ +||+|||+|++++||+|+|
T Consensus 338 p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~ 414 (620)
T 4dg8_A 338 AIAGTAVLLLDEHGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRF 414 (620)
T ss_dssp ECTTEEEEEECTTSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEE
T ss_pred cccCcEEEEECccCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEE
Confidence 9999999999944433366676 89999999999999999999999999543 7999999999999999999
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCCC--CeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++++++...+.
T Consensus 415 ~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~----------------------- 470 (620)
T 4dg8_A 415 IGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA----------------------- 470 (620)
T ss_dssp EECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-----------------------
T ss_pred EccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-----------------------
Confidence 9999999998 8999999999999999999999999986533 4556666554321
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHH
Q 005468 619 ARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~ 679 (695)
+.+.+ + ++||.|++|+.|++++++| +|++|||+|++|++.|.+.++
T Consensus 471 ----~~~~l----~-~~Lp~y~~P~~~~~v~~lP------~t~~GKidR~~L~~~~~~~~~ 516 (620)
T 4dg8_A 471 ----SPQAL----L-RQLPTWQRPHACVRVEALP------LTAHGKLDRAALLRRLEEPLE 516 (620)
T ss_dssp ----CCHHH----H-HHSCGGGSCSEEEECSSCC------CC----CCHHHHHHHTCSCC-
T ss_pred ----HHHHH----H-HhChhhcCCcEEEEECcCC------CCcccCHhHHHHhhccccccc
Confidence 01122 1 4689999999999999999 999999999999988765443
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-75 Score=649.37 Aligned_cols=491 Identities=20% Similarity=0.214 Sum_probs=377.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
+|+.++|.++++++||++|+.+. + +++||+||.++++++|++|++. +||+|+|+++|+++|++++|||
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~ 68 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC 68 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence 36778999999999999999753 2 4699999999999999999987 8999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEe-eHH
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL-TYS 237 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~-~~~ 237 (695)
+++|++++|+++.++.+++.+++++++++++|++............ ...+..+........... ........ ...
T Consensus 69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 144 (501)
T 3ipl_A 69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGLLD---NTMGIQYDTSNE 144 (501)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC------------------------------
T ss_pred HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeecccccccc---cccccccccchh
Confidence 9999999999999999999999999999999999776543322211 111111111100000000 00000000 001
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (695)
.................++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 224 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLR 224 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHH
Confidence 11111111011223457899999999999999999999999999999988888889999999999999999999998888
Q ss_pred HHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCch
Q 005468 318 TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (695)
Q Consensus 318 ~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~ 396 (695)
+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+....
T Consensus 225 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------------- 271 (501)
T 3ipl_A 225 AVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--------------------------------- 271 (501)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC---------------------------------
T ss_pred HHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC---------------------------------
Confidence 999999999987 7999999999999999999999999988763100
Q ss_pred hHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC--CCCCCcCCCccCcEE
Q 005468 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNAACEI 474 (695)
Q Consensus 397 ~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v 474 (695)
...++|.+++||+++++++.+++.+ +++++++.||+||+++.++...+.. ...+++|.|++++++
T Consensus 272 ------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 338 (501)
T 3ipl_A 272 ------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDV 338 (501)
T ss_dssp ------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEE
T ss_pred ------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEE
Confidence 0027999999999999999999987 5999999999999987555443322 466789999999999
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCee
Q 005468 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGE 554 (695)
Q Consensus 475 ~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~ 554 (695)
+|+|.+ .+ +.|||+|+|+++++|||++++.|.+ | .+|||+|||+|++|+||+++|+||+||+||+ +|+
T Consensus 339 ~i~d~~------~~---~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~ 406 (501)
T 3ipl_A 339 KIKNPN------KE---GHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGE 406 (501)
T ss_dssp EEESCC------SS---CCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSC
T ss_pred EEecCC------CC---CccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEE-CCE
Confidence 999943 23 3799999999999999999999988 6 7899999999999999999999999999996 999
Q ss_pred eechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHH
Q 005468 555 YIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLG 631 (695)
Q Consensus 555 ~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 631 (695)
+|+|.+||++|.+||+|.+|+|++.++ ++.++|+|++..+ .+ .++|++++
T Consensus 407 ~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~----------~~-----------------~~~l~~~l 459 (501)
T 3ipl_A 407 NIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD----------IS-----------------KAQLIAYL 459 (501)
T ss_dssp EECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC----------CC-----------------HHHHHHHH
T ss_pred EECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCC----------CC-----------------HHHHHHHH
Confidence 999999999999999999999998653 3577888887542 11 34566666
Q ss_pred HhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 632 REAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 632 ~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
+ ++|+.|++|+.|++++++| +|++|||+|++|++.++++
T Consensus 460 ~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 460 S-KHLAKYKVPKHFEKVDTLP------YTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp H-HHSCGGGSCSEEEECSSCC-------------------------
T ss_pred H-hhCccccCCCEEEEecccC------CCCCCCEeHHHHhhccccc
Confidence 5 6799999999999999999 9999999999999988765
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-75 Score=647.12 Aligned_cols=478 Identities=23% Similarity=0.270 Sum_probs=377.8
Q ss_pred CCCCHHHHHHHHHHhcCC-CccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
+++|+.++|.++++++|+ ++|+.+. + +++||+||.++++++|++|. .|++|+|+++|+++|++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 467788888888899887 9999763 2 56999999999999999885 3789999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (695)
|||+++|+++||+++.++.+++.+++++++++++|++..... ......+..+. ++..
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~~----------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDVR----------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCTT-----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-cccc-----------------
Confidence 999999999999999999999999999999999999865211 00111222221 1110
Q ss_pred HHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH-
Q 005468 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (695)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~- 314 (695)
.....+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++..
T Consensus 143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 214 (505)
T 3nyq_A 143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG 214 (505)
T ss_dssp --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence 00112233456899999999999999999999999999999988888888999999999999999999876
Q ss_pred HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 315 ~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
.+.+++.|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+......
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------------- 267 (505)
T 3nyq_A 215 ILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPEL-------------------------- 267 (505)
T ss_dssp THHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHH--------------------------
T ss_pred HHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchh--------------------------
Confidence 677999999999877 7899999999 889999999999999887632110000
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcE
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 473 (695)
....+++|.+++||+++++++.+++.+.+|+++++.||+||++..++.........+++|+|+++++
T Consensus 268 -------------~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 334 (505)
T 3nyq_A 268 -------------AKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334 (505)
T ss_dssp -------------HHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCE
T ss_pred -------------hcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCE
Confidence 0000378999999999999999999999999999999999999877766666677889999999999
Q ss_pred EEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecC-CCeeecCC
Q 005468 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK-KNIFKLAQ 552 (695)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~-~d~ikl~~ 552 (695)
++|+| +++..++...+++.|||+|+|++++.|||++|+.|++.|..+|||+|||+|++|+||+++|+||+ ||+||+ +
T Consensus 335 ~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~ 412 (505)
T 3nyq_A 335 LRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-G 412 (505)
T ss_dssp EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-T
T ss_pred EEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-C
Confidence 99999 45555544111238999999999999999999999999988999999999999999999999998 599997 9
Q ss_pred eeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHH
Q 005468 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDS 629 (695)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 629 (695)
|++|+|.|||++|.+||+|.+|+|++.++ ++.++|+|++.+... .. ..++|++
T Consensus 413 G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~-------~~-----------------~~~~l~~ 468 (505)
T 3nyq_A 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA-------PP-----------------ALGTLAD 468 (505)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS-------CC-----------------CHHHHHH
T ss_pred CEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC-------CC-----------------CHHHHHH
Confidence 99999999999999999999999998653 468999999875210 00 1455666
Q ss_pred HHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 630 LGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 630 ~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
+++ ++|+.|++|+.|++++++| +|++|||+|++|++
T Consensus 469 ~l~-~~L~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 469 HVA-ARLAPHKRPRVVRYLDAVP------RNDMGKIMKRALNR 504 (505)
T ss_dssp HHH-HHTCGGGSCSEEEECSCCC------C-------------
T ss_pred HHH-hhCCCCcCccEEEEECCCC------CCCCcCeeHHhhcc
Confidence 665 6799999999999999999 99999999999986
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-73 Score=642.05 Aligned_cols=512 Identities=15% Similarity=0.147 Sum_probs=317.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecC----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDG----TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL 152 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~----~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~ 152 (695)
...|+.++|+++++++||++|+.+. ++ .....+++||+||.++++++|++|.+.|+ +||+|+|+++|+++|+
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~ 93 (562)
T 3ite_A 18 STVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF 93 (562)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred ccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence 4578999999999999999999876 32 11234789999999999999999999999 7999999999999999
Q ss_pred HHHHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCce
Q 005468 153 IVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 153 ~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
+++|||+++|+++||+++.++.+++.+++++++++++|++......+ ..+....++..+.
T Consensus 94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~--------------- 153 (562)
T 3ite_A 94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN--------------- 153 (562)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC---------------
T ss_pred HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc---------------
Confidence 99999999999999999999999999999999999999987654322 1111111221110
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc--------ccccCCCcEEEEeC
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------GTKFYPSDVYISYL 304 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~~ 304 (695)
..+.+....... ........++++++|+|||||||.||||++||+++.+.+..+.. .+.+...+++++..
T Consensus 154 -~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (562)
T 3ite_A 154 -QSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLA 231 (562)
T ss_dssp -HHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCS
T ss_pred -hhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEec
Confidence 122232222211 12223455788999999999999999999999999887765433 24577889999999
Q ss_pred ChhhHHHHHHHHHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 005468 305 PLAHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNA 382 (695)
Q Consensus 305 pl~h~~~~~~~~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 382 (695)
|++|.+++...+.++..|+++++.+ ..+..+.+.++++++|++.++|++++.+...
T Consensus 232 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~---------------------- 289 (562)
T 3ite_A 232 SRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV---------------------- 289 (562)
T ss_dssp CTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----------------------
T ss_pred CchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----------------------
Confidence 9999999888888999999998866 2457888999999999999999987654210
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCC-CCCC
Q 005468 383 KKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDNL 461 (695)
Q Consensus 383 k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~-~~~~ 461 (695)
....++||.+++||+++++++.++|.+.++++++++||+||++..++.... ....
T Consensus 290 ------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~ 345 (562)
T 3ite_A 290 ------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSD 345 (562)
T ss_dssp ------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSC
T ss_pred ------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCC
Confidence 001158999999999999999999998889999999999999876655433 3356
Q ss_pred CCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCC--eeecccEEEEecCCcEE
Q 005468 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG--WFHTGDIGMWIPGGRLK 539 (695)
Q Consensus 462 ~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~g--w~~TGDlg~~~~dG~l~ 539 (695)
.+++|+|+++++++|+|.+++..++.|+ .|||+|+|++++.|||++|+.|...+ .+| ||+|||+|++|+||+|+
T Consensus 346 ~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~ 421 (562)
T 3ite_A 346 TRCIGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSIL 421 (562)
T ss_dssp TTEEEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEE
T ss_pred CccccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEE
Confidence 6789999999999999977777788886 89999999999999999999998776 455 99999999999999999
Q ss_pred EEecCCCeeecCCeeeechHHHHHHHhcC-cCcceEEEEeeCC---CC-eEEEEEEeCHHHHHHHHHHcCCCcccHHHhh
Q 005468 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKC-KFVGQCFVYGDSF---NS-ALVAIVSVDQDALKAWAASEGIQYENLEQLC 614 (695)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~-p~V~~~~V~g~~~---~~-~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~ 614 (695)
|+||+||+||+ +|++|+|.|||++|.+| |.|.+++|++.++ ++ .+++++......... .+.. .
T Consensus 422 ~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~-~ 489 (562)
T 3ite_A 422 FLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRG----------ELRW-I 489 (562)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccc----------cccc-c
Confidence 99999999997 99999999999999998 7888888887543 23 344444433321110 0000 0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccC-ccccCChHHHHHHHHHH-HHHHHHhc
Q 005468 615 NDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLT-PTFKIKRPQAKQYFAKA-IADMYAEL 685 (695)
Q Consensus 615 ~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t-~~gKi~R~~l~~~~~~~-i~~ly~~~ 685 (695)
.+-.+.+.++|+++++ ++|+.|++|+.|++++++| +| ++||++|++|++.|++. ..+++...
T Consensus 490 --~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~lP------~t~~~GKi~r~~L~~~~~~~~~~~~~~~~ 553 (562)
T 3ite_A 490 --NENYKEINNSLRQACE-QTLPAYMVPDFIIPISFIP------LRDTSAKTDAKALEHMFHTLSLGELFGES 553 (562)
T ss_dssp -------------------------------------------------------------------------
T ss_pred --ccchhhHHHHHHHHHH-hhCCcccCCcEEEEeccCC------CCCCCCcchHHHHHHHHhccCHHHHhccC
Confidence 0111234567888886 7899999999999999999 88 99999999999999864 34555443
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-73 Score=640.24 Aligned_cols=501 Identities=18% Similarity=0.220 Sum_probs=397.5
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.++++++||++|+.+. ++ +..+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 5679999999999999999999876 32 234789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEeccCCC---CHHHHHHHHHhccccEEEecccchhHHHhcc-cCCCCceEEEEECCCCCCCCCCCcCCCce
Q 005468 157 ACSAYSFISVPLYDTL---GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (695)
Q Consensus 157 A~~~~G~v~vpl~~~~---~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (695)
||+++|+++||+++.+ +.+++.++++++++++++++.+....+.... ...+.+..+ .
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 144 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI-------------------P 144 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE-------------------E
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc-------------------c
Confidence 9999999999999988 4578999999999999999987666554322 111111111 1
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHH
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 312 (695)
...++.+.... ..........++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|++++
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~ 223 (590)
T 3kxw_A 145 AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGL 223 (590)
T ss_dssp EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhh
Confidence 11222211111 11123345678999999999999999999999999999999988888899999999999999999999
Q ss_pred HH-HHHHHHcCcEEeEec-C----ChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 005468 313 AN-QVMTVYSGVAVGFYQ-G----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (695)
Q Consensus 313 ~~-~~~~l~~G~~~~~~~-~----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (695)
.. .+.+++.|+++++.+ + ++..+++.|+++++|++.++|.++..+.+.+....
T Consensus 224 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------- 282 (590)
T 3kxw_A 224 IGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--------------------- 282 (590)
T ss_dssp HTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------------
T ss_pred HHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------------
Confidence 87 677899999999876 2 89999999999999999999999988876321110
Q ss_pred HhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------CccccccccccccccccccCCC--
Q 005468 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQLDEG-- 458 (695)
Q Consensus 387 ~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~~~~~~-- 458 (695)
......+++|.+++||+++++++.++|.+.++ ++++++||+||++++++...+.
T Consensus 283 ------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~ 344 (590)
T 3kxw_A 283 ------------------KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSS 344 (590)
T ss_dssp ------------------GTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSC
T ss_pred ------------------ccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCC
Confidence 00111258999999999999999999999873 3699999999999876654321
Q ss_pred -------------------------CCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhh
Q 005468 459 -------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQ 513 (695)
Q Consensus 459 -------------------------~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~ 513 (695)
....+++|.|+++ ++|+|.+++..++.|+ .|||+|+||+++.|||++|+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~ 419 (590)
T 3kxw_A 345 YKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPEE 419 (590)
T ss_dssp CCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHHH
T ss_pred ceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChhH
Confidence 1234678999998 8889976677788776 899999999999999999999
Q ss_pred hhcccCC------CC--eeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHH-hcCcCcc--eEEEEeeC--
Q 005468 514 TKEVIDE------DG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY-AKCKFVG--QCFVYGDS-- 580 (695)
Q Consensus 514 t~~~~~~------~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l-~~~p~V~--~~~V~g~~-- 580 (695)
|++.|.. +| ||+|||+|++| ||+|+|+||+||+||+ +|++|+|.|||++| ..+|.|. +|+|++.+
T Consensus 420 t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~ 497 (590)
T 3kxw_A 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEE 497 (590)
T ss_dssp HHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEET
T ss_pred HHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCC
Confidence 9999953 24 99999999999 9999999999999997 99999999999999 8899998 78888853
Q ss_pred CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceee-EEEEe--ecCCCCCCC
Q 005468 581 FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVK-AVTLV--LEPFTVENG 657 (695)
Q Consensus 581 ~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~i~~~--~~~p~~~~~ 657 (695)
.++.+++++++.+.. .+....+.+.+.+++.+.. .|++|. .+.++ +++|
T Consensus 498 ~~~~~~~~v~~~~~~-------------------~~~~~~~~l~~~l~~~l~~----~~~~p~~~i~~v~~~~lP----- 549 (590)
T 3kxw_A 498 HEYKLTVMCEVKNRF-------------------MDDVAQDNLFNEIFELVYE----NHQLEVHTIVLIPLKAMP----- 549 (590)
T ss_dssp TEEEEEEEEEESCTT-------------------CCHHHHHHHHHHHHHHHHH----HHSCCCCEEEEEETTCSC-----
T ss_pred CCceEEEEEEecccc-------------------ccchhHHHHHHHHHHHHHH----HcCCceeEEEEECCCccC-----
Confidence 356788888876531 0011112233333333321 244553 45555 6899
Q ss_pred ccCccccCChHHHHHHHHHH
Q 005468 658 LLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 658 ~~t~~gKi~R~~l~~~~~~~ 677 (695)
+|++|||+|++|++.|.+.
T Consensus 550 -~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 550 -HTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp -CCSCHHHHHHHHHHHHHHT
T ss_pred -cCCCcHHHHHHHHHHHHcC
Confidence 9999999999999999763
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-71 Score=676.64 Aligned_cols=477 Identities=21% Similarity=0.261 Sum_probs=402.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..++.++|+..++++||++|+.+. + +.+||+||+++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999753 2 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|+++|||+|.++.+++.++++++++++++++......+. .++....++.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~------------------ 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT------------------ 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG------------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc------------------
Confidence 9999999999999999999999999999999999876544322 122222233332210
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~ 317 (695)
.. . .....+.....+++++||+|||||||.||||+++|+++.+. ......+++.++|+++++.|++|..+....+.
T Consensus 592 ~~-~--~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 667 (1304)
T 2vsq_A 592 RF-E--EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYA 667 (1304)
T ss_dssp GG-G--SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHH
T ss_pred cc-c--cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHH
Confidence 00 0 01112233457899999999999999999999999999876 44555678899999999999999999888899
Q ss_pred HHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 318 ~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+++.|+++++.+ .++..+.+.|.++++|+++++|++++.+.+....
T Consensus 668 ~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------------ 717 (1304)
T 2vsq_A 668 SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------------ 717 (1304)
T ss_dssp HHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------------
T ss_pred HHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------------
Confidence 999999999986 4889999999999999999999999988652000
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCCC----CCCCCCcCCC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEG----DNLSGHVGSP 468 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p 468 (695)
.+ ++||.+++||+++++++.+.|.+.++ ++++|+||+||++.+++..... .....++|+|
T Consensus 718 -------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p 782 (1304)
T 2vsq_A 718 -------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP 782 (1304)
T ss_dssp -------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEE
T ss_pred -------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCcee
Confidence 00 37999999999999999999988774 7899999999998776654322 2345689999
Q ss_pred ccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccC------CCCeeecccEEEEecCCcEEEEe
Q 005468 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 469 ~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~G 542 (695)
+++++++|+| +++..++.|. .|||||+|+++++|||++|+.|+++|. .++||+|||+|++++||.|+|+|
T Consensus 783 ~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~G 858 (1304)
T 2vsq_A 783 ISNASVYILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAG 858 (1304)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEc
Confidence 9999999999 6677788886 899999999999999999999999994 24599999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRA 619 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (695)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ +..++|+|++... .+
T Consensus 859 R~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~----------~~------------- 914 (1304)
T 2vsq_A 859 RIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ----------LS------------- 914 (1304)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS----------SC-------------
T ss_pred CCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC----------CC-------------
Confidence 99999998 899999999999999999999999998653 4689999998652 11
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHH
Q 005468 620 RAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQY 673 (695)
Q Consensus 620 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~ 673 (695)
.++|+++++ ++||.|++|..|++++++| +|++|||+|++|.+.
T Consensus 915 ----~~~l~~~l~-~~Lp~ymvP~~~~~l~~lP------~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 915 ----AEDVKAHLK-KQLPAYMVPQTFTFLDELP------LTTNGKVNKRLLPKP 957 (1304)
T ss_dssp ----HHHHHHHHH-HHSCGGGSCSEEEEESCCC------CCSSCSSCCSCCCCC
T ss_pred ----HHHHHHHHH-HhChHhhhccEEEEecccC------CCCCcccCHhhcCCc
Confidence 345666665 6899999999999999999 999999999998653
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-61 Score=531.73 Aligned_cols=400 Identities=18% Similarity=0.218 Sum_probs=318.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~l 156 (695)
...|+.++|.++++++||++|+.+....++..+..+++||+||.++++++|++|++.|+ +||+|+|+++|+++|++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999998862111223445789999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCeEEeccC---CCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCc--eEEEEECCCCCCCCCCCcCCCc
Q 005468 157 ACSAYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV--RLIVVIGGIDDQIPSLPITTGV 231 (695)
Q Consensus 157 A~~~~G~v~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l--~~ii~~~~~~~~~~~~~~~~~~ 231 (695)
||+++|+++|||++ .++.+++.+++++++++++|++......+.+.....+.. ..++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 788999999999999999999998877776655433321 1233222211
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCC------CcEEEEeCC
Q 005468 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYP------SDVYISYLP 305 (695)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~p 305 (695)
.. ...........++++++|+|||||||.||||++||+++++.+......+.+.. +|++++++|
T Consensus 169 ---------~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------LD-APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------TT-CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------cc-cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 00 01112234456889999999999999999999999999998887776666666 999999999
Q ss_pred hhhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 005468 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (695)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (695)
++|++++.. .+.+++.|+++++.+ .++..+++.++++++| +.++|+++..++......
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~--------------- 302 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD--------------- 302 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT---------------
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc---------------
Confidence 999999876 677899999999976 3899999999999999 889999988776531100
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------Ccccccccccccccccc
Q 005468 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLIS 453 (695)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~ 453 (695)
........++||.+++||+++++++.++|.+.++ +.++++||+||++++++
T Consensus 303 -----------------------~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 303 -----------------------DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp -----------------------GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred -----------------------ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 0001112268999999999999999999999884 36999999999998776
Q ss_pred ccCCCC-------------------------CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhcc
Q 005468 454 QLDEGD-------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYY 508 (695)
Q Consensus 454 ~~~~~~-------------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~ 508 (695)
...... ...+++|+|++ ++++|+|.+++..++.|+ .|||+|+|++++.|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~ 435 (480)
T 3t5a_A 360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW 435 (480)
T ss_dssp ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence 654432 23458999999 999999976678888887 8999999999999999
Q ss_pred CChhhhhcccC-----------CCCeeecccEEEEecCCcEEEEec
Q 005468 509 KDEIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDR 543 (695)
Q Consensus 509 ~~~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~GR 543 (695)
++|+.|+++|+ .+|||+|||+|++| ||+|+|+||
T Consensus 436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999995 57799999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-55 Score=458.23 Aligned_cols=313 Identities=17% Similarity=0.141 Sum_probs=265.3
Q ss_pred CCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHHHHHHHHcCcEEeEecCChhh
Q 005468 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK 334 (695)
Q Consensus 255 ~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~~~~~~~~~~~ 334 (695)
.+|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|++++...+.+++.|+++++... ...
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~-~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP-TAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC-CSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc-ccc
Confidence 3789999999999999999999999999999888888999999999999999999999988889999999988762 233
Q ss_pred HHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEE
Q 005468 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414 (695)
Q Consensus 335 l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr 414 (695)
+++.|+++++|++.++|+++..+++.... . ...++||
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------~-----------~~l~~lr 151 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------S-----------GQVDRLG 151 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------G-----------GGGGGGC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------c-----------ccCCcce
Confidence 46778999999999999999988752100 0 0114899
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcc
Q 005468 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494 (695)
Q Consensus 415 ~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~G 494 (695)
.+++||+++++++.+++++ +|++++++||+||+++.++.........+.+|.+.||+++++.+ .|
T Consensus 152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G 216 (358)
T 4gs5_A 152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG 216 (358)
T ss_dssp SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence 9999999999999999987 59999999999999988887777777788999999999998755 79
Q ss_pred eEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeeecCCeeeechHHHHHHH---hcCcCc
Q 005468 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY---AKCKFV 571 (695)
Q Consensus 495 El~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l---~~~p~V 571 (695)
||+++|+.+ .+|||+|||+|++|+|| ++|+||+||+||+ +|++|+|.|||++| .+||.|
T Consensus 217 el~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V 278 (358)
T 4gs5_A 217 CLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNI 278 (358)
T ss_dssp EEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTC
T ss_pred ceEEecccc----------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCc
Confidence 999998632 68999999999999988 6778999999996 89999999999887 468999
Q ss_pred ceEEEEe-eCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEE
Q 005468 572 GQCFVYG-DSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTL 647 (695)
Q Consensus 572 ~~~~V~g-~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~ 647 (695)
.+|+|++ .++ ++.++|+|++.... ...++|+++++ ++|+.|++|+.|++
T Consensus 279 ~~a~vv~~~~d~~~ge~~~a~v~~~~~~--------------------------~~~~~l~~~l~-~~L~~~~~P~~i~~ 331 (358)
T 4gs5_A 279 GNAFFCWWEPDAKLGQKLVLVIENAMPE--------------------------ALTERLTAEIR-SRVSTYENPKHIYF 331 (358)
T ss_dssp CCCEEEEEEEETTTEEEEEEEEESCCCH--------------------------HHHHHHHHHHH-HHSCGGGSCSCEEE
T ss_pred cEEEEEEecCCccCCEEEEEEEECCCCC--------------------------cCHHHHHHHHH-hhCCCCCCceEEEE
Confidence 9998764 332 35788888876532 22456677776 68999999999999
Q ss_pred eecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 648 VLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 648 ~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
++++| +|++|||+|++|+++|.+.
T Consensus 332 v~~lP------~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 332 AKAFA------KTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp ESSCC------BCTTSCBCHHHHHHHTC--
T ss_pred ECCcC------CCCCCChhHHHHHHHhhhh
Confidence 99999 9999999999999988764
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=418.03 Aligned_cols=349 Identities=15% Similarity=0.117 Sum_probs=266.6
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc---ccccCCCcEEEEeCCh-hh
Q 005468 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPL-AH 308 (695)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl-~h 308 (695)
+.+.+++.+.. +.......++++++|+|||||||.||||++||+++......... .+++.++|++++.+|+ +|
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 148 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF 148 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCccc
Confidence 34556665432 11223356789999999999999999999999998776544332 4678899999999999 57
Q ss_pred HHHHHHHHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005468 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (695)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~ 387 (695)
..++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|++.......
T Consensus 149 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~--------------------- 207 (443)
T 2y4o_A 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM--------------------- 207 (443)
T ss_dssp HHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC---------------------
T ss_pred ccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCC---------------------
Confidence 777777788899999998876 6999999999999999999999999988774321100
Q ss_pred hcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccc-ccccCCCCCCCCCcC
Q 005468 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVG 466 (695)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG 466 (695)
. ...+++|.+++||+++++++.+++.+.+|+++++.||+||+++. +....... ..| .+
T Consensus 208 ----~---------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~~ 266 (443)
T 2y4o_A 208 ----D---------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-KDG-PV 266 (443)
T ss_dssp ----C---------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT-CCS-EE
T ss_pred ----C---------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC-CCc-eE
Confidence 0 00158999999999999999999999899999999999997433 33222211 112 45
Q ss_pred CCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC-CcE-----EE
Q 005468 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRL-----KI 540 (695)
Q Consensus 467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G~l-----~i 540 (695)
.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|+++++ |++ +|
T Consensus 267 ~~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i 330 (443)
T 2y4o_A 267 IWEDHFYPEIIDPVTGEVLPDGS---QGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKI 330 (443)
T ss_dssp ECTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCC
T ss_pred EccCCeEEEEEcCCCCCCCCCCC---ceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCcc
Confidence 56789999999977788888776 899999983 34455 6899999999999999 987 89
Q ss_pred EecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC---CCCeEEEEEEeCH--HHHHHHHHHcCCCcccHHHhhC
Q 005468 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS---FNSALVAIVSVDQ--DALKAWAASEGIQYENLEQLCN 615 (695)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~--~~~~~~~~~~~~~~~~~~~~~~ 615 (695)
+||.||+||+ +|++|+|.+||++|.+||+|.+++|++.+ ..+.++|+|++.+ +.. .
T Consensus 331 ~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~------------------~ 391 (443)
T 2y4o_A 331 TGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS------------------V 391 (443)
T ss_dssp CEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT------------------C
T ss_pred ccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc------------------c
Confidence 9999999997 89999999999999999999999988742 3467889999886 210 0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCc-ceeeEEEEee--cCCCCCCCccCccccCChHHHHH
Q 005468 616 DPRARAAVLADMDSLGREAQLRGF-EFVKAVTLVL--EPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 616 ~~~~~~~i~~~l~~~~~~~~l~~~-~~p~~i~~~~--~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
+... .+++++.++ ++|+.| .+|..|.+++ ++| +|++||++|+..++
T Consensus 392 ~~~~----~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~lP------~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 392 TDGE----RAALARELQ-HRIKTMVGVSSGVTVLAAGGIP------ATATGKARRVIDRR 440 (443)
T ss_dssp CHHH----HHHHHHHHH-HHHHHHTCCCCEEEEECTTCSC------CCTTSCCCSEEECC
T ss_pred hhhH----HHHHHHHHH-HHHHHHhCCceEEEEeCCCccc------CccCCcceEEEecc
Confidence 0001 122333332 334454 4777888884 899 99999999975443
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=411.83 Aligned_cols=328 Identities=16% Similarity=0.153 Sum_probs=253.0
Q ss_pred CCCC-CCcEEEEeccCCCCCCceEEechHHHHHHHHhhc---cccccCCCcEEEEeCChhhHHHHHH-HHHHHHcCcEEe
Q 005468 252 PPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVG 326 (695)
Q Consensus 252 ~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~~~ 326 (695)
...+ +++++|+|||||||.||||++||+++.+.+.... ..+++.++|++++++|+.|..+... .+.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 8999999999999999999999999977665543 3357889999999999976666554 667899999998
Q ss_pred Eec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 005468 327 FYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405 (695)
Q Consensus 327 ~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~l~~~~~ 405 (695)
+.+ +++..+++.|+++++|+++++|+++..|++........ .
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------------~------------ 203 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID-------------------------P------------ 203 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC-------------------------T------------
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC-------------------------c------------
Confidence 876 79999999999999999999999999998753321100 0
Q ss_pred HhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccc-ccccCCCCCCCCCcCCCccCcEEEEeecCCCCC
Q 005468 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484 (695)
Q Consensus 406 ~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~ 484 (695)
..+++|.+++||+++++++.+++.+.||++++++||+||+++. +..... ....+|.|.++++++|+|++++..
T Consensus 204 ---~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~ 277 (436)
T 3qov_A 204 ---RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEP 277 (436)
T ss_dssp ---TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSB
T ss_pred ---ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCC
Confidence 0158999999999999999999999999999999999999544 332221 112366777899999999888888
Q ss_pred CCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCC------c---EEEEecCCCeeecCCeee
Q 005468 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG------R---LKIIDRKKNIFKLAQGEY 555 (695)
Q Consensus 485 ~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG------~---l~i~GR~~d~ikl~~G~~ 555 (695)
++.|+ .|||+|+|. +.+.| .++||+|||+|+++++| + ++|+||.||+||+ +|++
T Consensus 278 ~~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~G~~ 340 (436)
T 3qov_A 278 VPEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-KGVN 340 (436)
T ss_dssp CSTTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-TTEE
T ss_pred CCCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-CCEE
Confidence 88887 899999984 34455 78999999999999998 5 6999999999998 8999
Q ss_pred echHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHHHHHHHH
Q 005468 556 IAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGR 632 (695)
Q Consensus 556 v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 632 (695)
|+|.+||++|.+||+|.+++|++.++ ++.++|+|+++ +.. . .+....+.+.+.|++.
T Consensus 341 v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~--------~---------~~~~~~~~l~~~l~~~-- 400 (436)
T 3qov_A 341 IFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS--------T---------DNYIELEKIRRDIIRQ-- 400 (436)
T ss_dssp ECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC--------C---------CCHHHHHHHHHHHHHH--
T ss_pred ECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc--------c---------cchhhHHHHHHHHHHH--
Confidence 99999999999999999999988543 56899999988 320 0 0111112233333333
Q ss_pred hcCCCCc-ceeeEEEEee--cCCCCCCCccCccccCChHH
Q 005468 633 EAQLRGF-EFVKAVTLVL--EPFTVENGLLTPTFKIKRPQ 669 (695)
Q Consensus 633 ~~~l~~~-~~p~~i~~~~--~~p~~~~~~~t~~gKi~R~~ 669 (695)
|+.+ ++|..|.+++ ++| +|+ ||++|..
T Consensus 401 ---l~~~~~~p~~i~~v~~~~lP------~t~-GKi~R~~ 430 (436)
T 3qov_A 401 ---LKDEILVTPKVKLVKKGSLP------QSE-GKAVRVK 430 (436)
T ss_dssp ---HHHHHSSCCEEEEECTTCCC--------------CEE
T ss_pred ---HHHhcCCceEEEEeCCCccc------CcC-CcceEEE
Confidence 3344 5777899999 999 999 9999863
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=412.99 Aligned_cols=344 Identities=16% Similarity=0.122 Sum_probs=265.1
Q ss_pred eeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhc---cccccCCCcEEEEeCCh-hhH
Q 005468 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-AHI 309 (695)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~h~ 309 (695)
.+.+++.+.. +.......++++++|+|||||||.||||++||+++...+.... ..+++.++|++++.+|+ +|.
T Consensus 71 ~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 147 (437)
T 2y27_A 71 TTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFT 147 (437)
T ss_dssp BCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSH
T ss_pred CCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccc
Confidence 4555665432 1122345678999999999999999999999999877654433 24678899999999998 788
Q ss_pred HHHHHHHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Q 005468 310 YERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (695)
Q Consensus 310 ~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (695)
.++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|++.......
T Consensus 148 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~---------------------- 205 (437)
T 2y27_A 148 GGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGL---------------------- 205 (437)
T ss_dssp HHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC----------------------
T ss_pred cchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCC----------------------
Confidence 88877788899999998776 6999999999999999999999999998774322100
Q ss_pred cCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccc-ccccCCCCCCCCCcCC
Q 005468 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVGS 467 (695)
Q Consensus 389 ~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG~ 467 (695)
.. ..+++|.+++||+++++++.+++.+.+|+++++.||+||+++. ++...+.. ..+ ++.
T Consensus 206 ---~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~~~ 265 (437)
T 2y27_A 206 ---DP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET-KDG-PTI 265 (437)
T ss_dssp ---CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT-CSS-CEE
T ss_pred ---Cc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC-CCc-eeE
Confidence 00 0148999999999999999999999899999999999998432 33222211 112 556
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEec-CCcE-----EEE
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP-GGRL-----KII 541 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~-dG~l-----~i~ 541 (695)
|.+++.++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|++++ +|++ +|+
T Consensus 266 ~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~ 329 (437)
T 2y27_A 266 WEDHFYPEIIDPETGEVLPDGE---LGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKIT 329 (437)
T ss_dssp CTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCC
T ss_pred ccCceEEEEEcCCCCCCCCCCC---ccEEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCccc
Confidence 7789999999977788888776 899999983 34556 689999999999999 6986 899
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC---CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS---FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
||.||+||+ +|++|+|.+||++|.+||+|.+++|++.+ ..+.++|+|+++++.. .+..
T Consensus 330 GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~------------------~~~~ 390 (437)
T 2y27_A 330 GRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA------------------PDTA 390 (437)
T ss_dssp EEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT------------------TCHH
T ss_pred cccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc------------------chhh
Confidence 999999997 89999999999999999999999888742 3568899999876320 0000
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-ceeeEEEEe--ecCCCCCCCccCccccCChHH
Q 005468 619 ARAAVLADMDSLGREAQLRGF-EFVKAVTLV--LEPFTVENGLLTPTFKIKRPQ 669 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~-~~p~~i~~~--~~~p~~~~~~~t~~gKi~R~~ 669 (695)
. .+++++.++ +.|+.| .+|..|.++ +++| +|+ ||++|..
T Consensus 391 ~----~~~l~~~l~-~~l~~~~~~p~~v~~v~~~~lP------~t~-GKi~r~~ 432 (437)
T 2y27_A 391 A----IQVAKQALA-YDIKSLIGVTAVINVLPVNGIE------RSV-GKARRVV 432 (437)
T ss_dssp H----HHHHHHHHH-HHHHHHHCCCEEEEECCTTCSC------CCS-SSCCCEE
T ss_pred h----HHHHHHHHH-HHHHHhcCCceEEEEeCCCCcc------CCC-CcceEEE
Confidence 0 122333332 345555 478888888 4899 999 9999964
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=272.48 Aligned_cols=237 Identities=15% Similarity=0.150 Sum_probs=176.3
Q ss_pred CCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhh---ccccccCCCcEEEEeCCh-hhHHHHHHHHHHHHcCcEEeEe
Q 005468 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISYLPL-AHIYERANQVMTVYSGVAVGFY 328 (695)
Q Consensus 253 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~~~~~ 328 (695)
..++++++|+|||||||.||+|+++|+++...+... ....++.++|++++.+|+ +|.+++...+.++..|+.++..
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 467899999999999999999999999999888743 344678899999999999 9999999888889999944433
Q ss_pred cCChh-----------------------hHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 005468 329 QGDNM-----------------------KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (695)
Q Consensus 329 ~~~~~-----------------------~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (695)
.+++. .+++.|+++++|+++++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence 46776 7888999999999999999999987631100
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHH-HHh-CCccccccccccccccccccCCCCCCCC
Q 005468 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK-ICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (695)
Q Consensus 386 ~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~-~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (695)
....+++|.+++||+++++++.+++. +.| ++++++.||+||+++++..... .
T Consensus 227 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~ 280 (369)
T 3hgu_A 227 ---------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----T 280 (369)
T ss_dssp ---------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----C
T ss_pred ---------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----c
Confidence 00013899999999999999999999 898 8999999999999876543321 1
Q ss_pred CcCCC------ccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC--
Q 005468 464 HVGSP------NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-- 535 (695)
Q Consensus 464 ~vG~p------~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-- 535 (695)
++|.| .++++++|+|++++..++.|+ .|||+|++.. ++.+ --+|+|||++.+.+.
T Consensus 281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~~ 343 (369)
T 3hgu_A 281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGVS 343 (369)
T ss_dssp TTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCST
T ss_pred cCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcC------------cccc--cccccCCceEEEecCCC
Confidence 58999 999999999976888888887 8999999732 1111 124788888877643
Q ss_pred C-------cEEEEecCCCeeecCCee
Q 005468 536 G-------RLKIIDRKKNIFKLAQGE 554 (695)
Q Consensus 536 G-------~l~i~GR~~d~ikl~~G~ 554 (695)
| .+..++|.++..|| .|.
T Consensus 344 g~~~d~~~~v~~~~~~~~~~~i-~gv 368 (369)
T 3hgu_A 344 GFAGDRLADIEPLKISEGRKVI-EGV 368 (369)
T ss_dssp TCSSCEEEEEEECC------------
T ss_pred CCcCcccccceeccccCCCcee-eec
Confidence 2 25566777777776 554
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=108.07 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=64.7
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeC---CCCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS---FNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~---~~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
.|.|||||+ +|.||+|.+||++|.+||+|.+++|++.+ .++.++++|+..+.. . .+..
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~----------~--------~~~~ 61 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF----------T--------DDYG 61 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC----------C--------CCHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc----------c--------cccc
Confidence 389999998 89999999999999999999999988854 346788888877631 0 1222
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeEEEEee--cCCCCCCCccCccccCChH
Q 005468 619 ARAAVLADMDSLGREAQLRGFEFVKAVTLVL--EPFTVENGLLTPTFKIKRP 668 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~--~~p~~~~~~~t~~gKi~R~ 668 (695)
..+.+.++|++.++. .+ .++..+.+++ ++| +| +||++|-
T Consensus 62 ~~~~l~~~i~~~l~~-~~---gv~~~v~~v~~~~lP------rt-sGKi~Rv 102 (109)
T 3lax_A 62 RLQALTREITRQLKD-EI---LVTPRVKLVPKGALP------KS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHHHH-HH---SSCCEEEEECTTCSC------CC----CCCE
T ss_pred hhhhhHHHHHHHHHH-Hh---CCccceEEEcCCeec------CC-CCCcchh
Confidence 233444444444431 11 1233566765 699 98 7999983
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=107.59 Aligned_cols=130 Identities=13% Similarity=0.141 Sum_probs=82.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCCC-ccC-cEEEEeecCCC------
Q 005468 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGSP-NAA-CEIKLVDVPEM------ 482 (695)
Q Consensus 413 lr~i~~gG~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~i~d~~~~------ 482 (695)
+..++.||. ......++..+ +.+++ .+|++||+... .+......+..+|.. +|+ +-+..++.++.
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v 376 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFG--INLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV 376 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceee--eccCCCCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence 666677773 44445555544 57766 99999996322 221111112223332 222 33455553332
Q ss_pred --CCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEec----CCcEEEEecCCCeeecCCeeee
Q 005468 483 --NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFKLAQGEYI 556 (695)
Q Consensus 483 --~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ikl~~G~~v 556 (695)
..+..| ..+||.|+..+ |.|. |++||+.+++. ..++.|+||.|++|.+ .|+++
T Consensus 377 ~l~eVe~G---~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl 435 (581)
T 4eql_A 377 DLEDVKLG---CTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKT 435 (581)
T ss_dssp EGGGCCTT---CEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCE
T ss_pred CHHHcCCC---ceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeEC
Confidence 112233 37899998752 3221 89999999986 3579999999999997 89999
Q ss_pred chHHHHHHHhcC
Q 005468 557 AAEKIENVYAKC 568 (695)
Q Consensus 557 ~p~~IE~~l~~~ 568 (695)
++++||+++.+.
T Consensus 436 ~~~~v~~al~~a 447 (581)
T 4eql_A 436 NEEDLFKAVSQA 447 (581)
T ss_dssp EHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH
Confidence 999999999743
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.8e-08 Score=106.21 Aligned_cols=128 Identities=12% Similarity=0.138 Sum_probs=80.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCCC-ccC-cEEEEeecCCC------
Q 005468 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGSP-NAA-CEIKLVDVPEM------ 482 (695)
Q Consensus 413 lr~i~~gG~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~~v~i~d~~~~------ 482 (695)
+..++.||. ......++..+ +.+++ .+|++||+... . +......++..+.. +|+ .-+..++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i-~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~ 381 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFG-L-NLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSR 381 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEE-E-CSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCS
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeee-e-ecCCCCCcccCceeecCCcEEEEEEecccccccccc
Confidence 556666763 33345555544 56766 99999996422 2 21111112222322 233 33445543332
Q ss_pred ---------CCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEec----CCcEEEEecCCCeee
Q 005468 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFK 549 (695)
Q Consensus 483 ---------~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ik 549 (695)
..+..| ..+||.|+.. .|.|. |++||+++++. ...+.|+||.+++|+
T Consensus 382 ~~~~~~v~l~eVe~G---~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~ 441 (609)
T 4b2g_A 382 DSPPRLVDLAHVEVG---KEYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLS 441 (609)
T ss_dssp SSCCCCEEGGGCCTT---CEEEEEEECT---TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCccccHhHcCCC---CeEEEehhhh---hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEE
Confidence 112233 3789999754 35442 89999999984 468999999999999
Q ss_pred cCCeeeechHHHHHHHh
Q 005468 550 LAQGEYIAAEKIENVYA 566 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~ 566 (695)
+ .|++|++.+||+++.
T Consensus 442 ~-~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 442 I-DSDKTDEAELQKAVD 457 (609)
T ss_dssp S-SSCCBCHHHHHHHHH
T ss_pred c-cccCCCHHHHHHHHH
Confidence 7 899999999999996
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.9e-07 Score=97.93 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=90.1
Q ss_pred CcEE---EEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCC-CccC-cEEEEeecCCC-
Q 005468 411 GRVR---FMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGS-PNAA-CEIKLVDVPEM- 482 (695)
Q Consensus 411 ~~lr---~i~~gG~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~i~d~~~~- 482 (695)
++++ .++.|+. ......++..+ +.+++ .+|++||+... . +......++..+. .+|+ .-+..++.++.
T Consensus 302 Pnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i-~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGWIA-A-NVTPRLSPEEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEEEE-E-CCCTTSCTTTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceeccceeee-e-ecCCCCCccccceeecCCcEEEEEEeccccc
Confidence 5664 4444433 33335555555 57776 99999996322 2 2211222222233 2233 22344443321
Q ss_pred ---------CCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecC----CcEEEEecCCCeee
Q 005468 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GRLKIIDRKKNIFK 549 (695)
Q Consensus 483 ---------~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~l~i~GR~~d~ik 549 (695)
..+..| ..+||.|+..+ |.|. |++||+.++..- ..+.|+||.++++.
T Consensus 377 ~~~~~~v~l~eve~G---~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~ 436 (581)
T 4epl_A 377 EGEEKPVGLTQVKIG---EEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILS 436 (581)
T ss_dssp ---CCCEEGGGCCTT---CEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCceeeHHHcCCC---CeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence 122333 37999998752 3221 899999999742 46999999999999
Q ss_pred cCCeeeechHHHHHHHhc------Cc--CcceEEEEeeCCC--CeEEEEEEe
Q 005468 550 LAQGEYIAAEKIENVYAK------CK--FVGQCFVYGDSFN--SALVAIVSV 591 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~~------~p--~V~~~~V~g~~~~--~~~va~vv~ 591 (695)
+ .|+++++.+||+++.+ .. .|.+-.++.+... .+-+.+...
T Consensus 437 ~-~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~ 487 (581)
T 4epl_A 437 I-NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEI 487 (581)
T ss_dssp S-SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEE
T ss_pred e-eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEee
Confidence 8 8999999999999964 22 3556666664322 233444443
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=1.4 Score=46.37 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=88.3
Q ss_pred CCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEec
Q 005468 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPL 168 (695)
Q Consensus 93 pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl 168 (695)
++.++++.. ..|+.|.. ..+|.+.+...+..++..+...|+.++|++...++-. ...+...++++..|+.++++
T Consensus 89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 455665443 25555543 4579999988888888888888999999999888753 33345578889999998877
Q ss_pred cCCCCHHHHHHHHHhccccEEEecccchhHHHhccc------CCCCceEEEEECC
Q 005468 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (695)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (695)
.. ..++.+...+++.+++++++.+..+..+.+... ....++.+++-++
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 65 478899999999999999998887766654321 1245776666443
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=92.09 E-value=1.5 Score=46.23 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=88.4
Q ss_pred CCCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEec
Q 005468 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPL 168 (695)
Q Consensus 93 pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl 168 (695)
++.++++.. ..|+.|.. ..+|.+.+...+..++..+...|+.++|++..+++-+ ...+...++++..|+.++++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 455554433 25666653 3578999988888888888888999999999888753 33445678888999998887
Q ss_pred cCCCCHHHHHHHHHhccccEEEecccchhHHHhccc------CCCCceEEEEECC
Q 005468 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (695)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (695)
... .++.+...+++.++.++++.+..+..+.+... ....++.+++-++
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 664 78899999999999999998877766554321 1246776666543
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=1.8 Score=45.57 Aligned_cols=121 Identities=13% Similarity=0.051 Sum_probs=89.1
Q ss_pred CCccEEEEeeecCccCcc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEecc
Q 005468 94 DYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPLY 169 (695)
Q Consensus 94 d~~al~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl~ 169 (695)
+.++++.. ..|+.|.. ..+|.+.+...+..++..+...|+.++|++..+.+-+ ...+..+++++..|+..++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 45555443 25555543 3579999998888888888889999999999888743 344556788899999988776
Q ss_pred CCCCHHHHHHHHHhccccEEEecccchhHHHhccc------CCCCceEEEEECC
Q 005468 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (695)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 217 (695)
.. .++.+...+++.++++++..+..+..+.+... .+..++.+++-++
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 54 67889999999999999998887766654321 1456777776543
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=80.44 E-value=25 Score=37.71 Aligned_cols=120 Identities=9% Similarity=-0.060 Sum_probs=84.3
Q ss_pred cCCCccEEEEeeecCccCc--ceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH--H-HHHHHHhcCCeEE
Q 005468 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--I-VDHACSAYSFISV 166 (695)
Q Consensus 92 ~pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~--~-~~lA~~~~G~v~v 166 (695)
.|+.+|++.. ..|..|. ...+|.+.+...+..+.. ..++.++|++...+|-...+- . .+++++..|+..+
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4677777654 2455443 345789888776655443 347889999888887664433 2 4788899999988
Q ss_pred eccCCCCHHHHHHHHHhccccEEEecccchhHHHhcc----cCCCCceEEEEECC
Q 005468 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIGG 217 (695)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~~ 217 (695)
..+ ...++.+...+++.++++++..+.....+.+.. ..++.++.+++-++
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 764 467889999999999999999887766655432 24567787776544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 695 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-74 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 2e-66 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-65 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-59 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 7e-43 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 3e-42 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 1e-40 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 250 bits (639), Expect = 2e-74
Identities = 92/617 (14%), Positives = 189/617 (30%), Gaps = 115/617 (18%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
+ K ++Y E + L+ GI KG + +Y PE + AC+ + +
Sbjct: 99 SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 158
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSC-----------LSEVPTVRLIVVIGG 217
+ P+AV + +S + V + + + S V +V ++V+
Sbjct: 159 FGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR 218
Query: 218 IDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLS 277
I + L + S +D I YTSG+TG PKG + +
Sbjct: 219 TGSDIDWQEGRD-----LWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 273
Query: 278 HGNLIASVAGA-TLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG----- 330
G + A ++P D+Y + + + + + G ++G
Sbjct: 274 TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP 333
Query: 331 DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390
++ + + + + P L A + S
Sbjct: 334 TPARMCQVVDKHQVNILYTAPTAIR------------------ALMAEGDKAIEGTDRS- 374
Query: 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG---RVTEGYGMTE 447
+R +GS P++P+ ++ G V + + TE
Sbjct: 375 ---------------------SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 413
Query: 448 TS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPL 502
T + + +G P + LVD +E P G + +
Sbjct: 414 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-------NEGHPQEGATEGNLVITDSW 466
Query: 503 --IFKGYYKDEIQTKEVIDE--DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558
+ + D + ++ + +GD G I R ++ ++ G +
Sbjct: 467 PGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS-GHRLGT 525
Query: 559 EKIENVYAKCKFVGQCFVYG---DSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCN 615
+IE+ + + V G A+ A V+++ E +L
Sbjct: 526 AEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE------------EPSPELYA 573
Query: 616 DPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFA 675
+ R +G A + ++ P T + KI R ++ A
Sbjct: 574 EVRNWVR-----KEIGPLATPDVLHWTDSL-----P-------KTRSGKIMRRILRKIAA 616
Query: 676 KAIADMYAELSRSDPSP 692
+++ + +DP
Sbjct: 617 GDTSNLGDTSTLADPGV 633
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 226 bits (576), Expect = 2e-66
Identities = 118/620 (19%), Positives = 193/620 (31%), Gaps = 119/620 (19%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
D RA F + + GE TY E + GL G+ G
Sbjct: 12 NLWDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 66
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL 199
+ N L A + L P + YI+NHA + + P L +
Sbjct: 67 RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 126
Query: 200 LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVA 259
+ E+ TV+ VV+ + +
Sbjct: 127 EAIRGELKTVQHFVVMDEKAPEGYLAYE--------------EALGEEADPVRVPERAAC 172
Query: 260 TICYTSGTTGTPKGAVLSHGNLIASVAGAT--LGTKFYPSDVYISYLPLAHIYERANQVM 317
+ YT+GTTG PKG V SH L+ A+ GT DV + +P+ H+
Sbjct: 173 GMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA 232
Query: 318 TVYSGVAVGFY--QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375
G + D L++ T VP ++ +
Sbjct: 233 ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL------------------ 274
Query: 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF 435
+ + +R + G S ++ +
Sbjct: 275 ------------------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFE-RM 309
Query: 436 GGRVTEGYGMTETSCLISQ-----------LDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484
G V +GYG+TETS ++ Q +E L G P +++ D E
Sbjct: 310 GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP 368
Query: 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
+D GE+ ++GP I GYY +E T+ + DG+F TGDI +W G ++I DR
Sbjct: 369 VPKDGKAL-GEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRL 427
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIVSVDQDALKAWAA 601
K++ K GE+I++ +EN V + V + +A+V +
Sbjct: 428 KDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP----- 481
Query: 602 SEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTP 661
+L + + F + + P T
Sbjct: 482 -------------TPEELNEHLLK--AGFAKWQLPDAYVFAEEI-----P-------RTS 514
Query: 662 TFKIKRP----QAKQYFAKA 677
K + Q K Y+ A
Sbjct: 515 AGKFLKRALREQYKNYYGGA 534
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 224 bits (570), Expect = 2e-65
Identities = 121/620 (19%), Positives = 210/620 (33%), Gaps = 105/620 (16%)
Query: 73 PDHP-EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI 131
P +P E GT + +A+ + GT D + +TY E + +
Sbjct: 10 PFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVN--ITYAEYFEMSVRLAEAMK 65
Query: 132 YHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191
+G++ I + N ++ + P D + +N + VF
Sbjct: 66 RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 125
Query: 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFS 251
+ L +L+ ++P ++ I+++ D + + +T + P S
Sbjct: 126 SKKGLQKILNVQKKLPIIQKIIIM---DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPES 182
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLAH 308
+ +A I +SG+TG PKG L H + A G + P +S +P H
Sbjct: 183 FDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242
Query: 309 IYERANQVMTVYSGVA-VGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
+ + + G V Y+ + + + + VP L++
Sbjct: 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA--------- 293
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
K+ L GA
Sbjct: 294 -----------------------KSTLIDKYDL---------SNLHEIASGGAPLSKEVG 321
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
K + +GYG+TET+ I EGD+ G VG E K+VD+
Sbjct: 322 EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 381
Query: 488 DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
+Q GE+CVRGP+I GY + T +ID+DGW H+GDI W I+DR K++
Sbjct: 382 NQR---GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSL 438
Query: 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKA 598
K G +A ++E++ + + V G D A+V ++ + +
Sbjct: 439 IKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 497
Query: 599 WAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRG-FEFVKAVTLVLEPFTVENG 657
+ AS+ + +LRG FV V P
Sbjct: 498 YVASQ--------------------------VTTAKKLRGGVVFVDEV-----P------ 520
Query: 658 LLTPTFKIKRPQAKQYFAKA 677
T K+ + ++ KA
Sbjct: 521 -KGLTGKLDARKIREILIKA 539
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 210 bits (535), Expect = 1e-59
Identities = 107/617 (17%), Positives = 200/617 (32%), Gaps = 107/617 (17%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
G+ +TY E +V L Y G+ KG + +Y PE +I A S I
Sbjct: 86 GQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSV 145
Query: 168 LYDTLGPDAVKYIVNHASVQAVFC---------VPQTLNSLLSCLSEVPTVRLIVVIGGI 218
++ ++++ +N + V V +T + L E P VR ++V
Sbjct: 146 VFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKT 205
Query: 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH 278
++ + + P +P +D + YTSG+TG PKG S
Sbjct: 206 NNPSVAFH----APRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHST 261
Query: 279 -GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG-----D 331
G L+ ++ + DV+ + + I V + G A ++G +
Sbjct: 262 AGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN 321
Query: 332 NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391
+ D + + T F P L A + + L
Sbjct: 322 YSRYWDIIDEHKVTQFYVAPTALRL------------------LKRAGDSYIENHSLK-- 361
Query: 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR---VTEGYGMTET 448
+R +GS P++ +V ++ G + + Y TE+
Sbjct: 362 --------------------SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 401
Query: 449 SCLISQLDEGDNL---SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLI 503
+ G G P + ++D + G + V+ P
Sbjct: 402 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSF 459
Query: 504 FKGYYKDEIQTKEVI--DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKI 561
+ +K+ + + G++ TGD G + I+ R ++ + G ++ +I
Sbjct: 460 ARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEI 518
Query: 562 ENVYAKCKFVGQCFVYG---DSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618
E + V +C V G D A+ A V + + + A + +Q + + L R
Sbjct: 519 EAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQ-DIKKHLVFTVR 577
Query: 619 ARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAI 678
+G A + V + P T + KI R + +
Sbjct: 578 KD---------IGPFAAPKLIILVDDL-----P-------KTRSGKIMR--------RIL 608
Query: 679 ADMYAELSRSDPSPNTL 695
+ A S +TL
Sbjct: 609 RKILAGESDQLGDVSTL 625
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 160 bits (405), Expect = 7e-43
Identities = 88/551 (15%), Positives = 168/551 (30%), Gaps = 109/551 (19%)
Query: 73 PDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY 132
++P T H F V + V + V E + +TY E ++ I
Sbjct: 17 AEYPRDKTIHQLFEEQVSKRPN------NVAI---VCENEQLTYHELNVKANQLARIFIE 67
Query: 133 HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192
GI K + +G+ + I A VP+ + ++YI++ + + +
Sbjct: 68 KGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQ 127
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
++ + I Q+ + + R P
Sbjct: 128 KHLVHLIH-------------------------NIQFNGQVEIFEEDTIKIREGTNLHVP 162
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
K D+A + YTSGTTG PKG +L H + D + ++
Sbjct: 163 SKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV 222
Query: 313 ANQVMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
M + +G ++ D +K + TV P + +++T
Sbjct: 223 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQT- 281
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
+ + S SP ++
Sbjct: 282 -----------------------------------------------LITAGSATSPSLV 294
Query: 429 DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSED 488
+ K YG TET+ + GH A + +
Sbjct: 295 N--KWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQI----YIVDENL 348
Query: 489 QPCP---RGEICVRGPLIFKGYYKDEIQTKEVI------DEDGWFHTGDIGMWIPGGRLK 539
Q GE+C+ G + +GY+K T + + + TGD W+ G ++
Sbjct: 349 QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIE 408
Query: 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV----SVD 592
+ R N K+ G + E++E++ K ++ + V L A +
Sbjct: 409 YLGRIDNQVKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP 467
Query: 593 QDALKAWAASE 603
+ L+ +++ E
Sbjct: 468 LEQLRQFSSEE 478
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 158 bits (399), Expect = 3e-42
Identities = 88/541 (16%), Positives = 154/541 (28%), Gaps = 88/541 (16%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T ++ RA D+ L +T+ E V + L G+
Sbjct: 3 TVNEMLRRAATRAPDHCALAV-------PARGLRLTHAELRARVEAVAARLHADGLRPQQ 55
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV--PQTLN 197
+ + N + +I A + L L + ++ + A Q +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 198 SLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDD 257
++ S + L ++ + PI +P
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPI---------------------EDPQREPAQ 154
Query: 258 VATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317
A I YTSGTTG PK A++ + V + + + + +
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 318 TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
V + G Y D L + L
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD--------------ALAA 260
Query: 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG 437
AA +A L +R + + + VL+ + G
Sbjct: 261 AAAHAGSSLKLD----------------------SLRHVTFAGATMPDAVLETVHQHLPG 298
Query: 438 RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE-- 495
YG TE + G + +++ D+ GE
Sbjct: 299 EKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGG-------VDEIVANGEEG 351
Query: 496 --ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553
I F GY T E + +DGW+ T D+ +W P G ++I+ R ++ G
Sbjct: 352 ELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIIS-GG 409
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKAWAASEG 604
E I +IE V V + V G + ++ A V ++ DAL + S
Sbjct: 410 ENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE 469
Query: 605 I 605
+
Sbjct: 470 L 470
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 154 bits (389), Expect = 1e-40
Identities = 107/609 (17%), Positives = 183/609 (30%), Gaps = 109/609 (17%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T D + D + T G W +Y E T + +G GI +
Sbjct: 26 TFGDLLRDRAAKYGDRIAI--------TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL 199
+ + N E+ V A + V + + Y A A
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136
Query: 200 LSCL-----SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK 254
L S++PT++ I+V G ++ +P L + K
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGEAEEFLP----------------LEDLHTEPVKLPEVK 180
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DVA + + G+TG K +H + I S+ + S VY++ LP+AH Y ++
Sbjct: 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSS 240
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
+ + D +
Sbjct: 241 PGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVT-----------------------ITA 277
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
L A S ++ L G + S + +K
Sbjct: 278 LVPPLAMVWMDAASSRRDDLSSLQVLQ----------------VGGAKFSAEAARRVKAV 321
Query: 435 FGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
FG + + +GM E ++LD+ + + G P + + V + +P
Sbjct: 322 FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDR---DVKPGET 378
Query: 494 GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553
G + RGP +GYYK E EDG++ TGDI G + + R K+ G
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRG-G 437
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIVSVDQDALKAWAASEGIQYENL 610
E +AAE++EN V + + +A KA L
Sbjct: 438 EKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKA---------AEL 488
Query: 611 EQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQA 670
+ R R L EFV++ P T K+ +
Sbjct: 489 KAFL---RER--------GLAAYKIPDRVEFVESF-----P-------QTGVGKVSKKAL 525
Query: 671 KQYFAKAIA 679
++ ++ +
Sbjct: 526 REAISEKLL 534
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 695 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.7e-77 Score=678.28 Aligned_cols=521 Identities=17% Similarity=0.238 Sum_probs=423.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
+-...+|.++++.+||++|+++. ..+.++.+++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||
T Consensus 72 N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~ 148 (643)
T d1pg4a_ 72 NLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 148 (643)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHH
Confidence 44456777889999999999876 334456788999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch---------hHHHhcc--cCCCCceEEEEECCCCCCCCCCCc
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCL--SEVPTVRLIVVIGGIDDQIPSLPI 227 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~--~~~~~l~~ii~~~~~~~~~~~~~~ 227 (695)
+++|++++|+++.++++++.+++++++++++|+++... ..+...+ ...+.++.++++.........
T Consensus 149 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~--- 225 (643)
T d1pg4a_ 149 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW--- 225 (643)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC---
T ss_pred HHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccccc---
Confidence 99999999999999999999999999999999976421 2222222 134667788887654322111
Q ss_pred CCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHh-hccccccCCCcEEEEeCCh
Q 005468 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYLPL 306 (695)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~pl 306 (695)
.......+.+....... .......+++|+++|+|||||||.||||++||++++..... ....+++.++|++++++|+
T Consensus 226 -~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 303 (643)
T d1pg4a_ 226 -QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADV 303 (643)
T ss_dssp -CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCT
T ss_pred -ccccchhhhhhhcccCc-ccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCCh
Confidence 11122344444443322 23445567899999999999999999999999997655443 3445788999999999999
Q ss_pred hhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q 005468 307 AHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (695)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (695)
+|++++.. ++.+|+.|+++++++ .++..+++.|+++++|++.++|+++..|++......
T Consensus 304 ~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~--------------- 368 (643)
T d1pg4a_ 304 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI--------------- 368 (643)
T ss_dssp TSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT---------------
T ss_pred HHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhc---------------
Confidence 99999876 557899999999976 378899999999999999999999998865311100
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---CccccccccccccccccccCC
Q 005468 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQLDE 457 (695)
Q Consensus 381 ~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~ 457 (695)
+....++||.+++||+++++++.+++.+.+| ++++++||+||+++.++...+
T Consensus 369 -------------------------~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~ 423 (643)
T d1pg4a_ 369 -------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLP 423 (643)
T ss_dssp -------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCT
T ss_pred -------------------------cccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCC
Confidence 0111258999999999999999999999884 679999999999987766544
Q ss_pred CC--CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeC--CccchhccCChhhhhccc--CCCCeeecccEEE
Q 005468 458 GD--NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGDIGM 531 (695)
Q Consensus 458 ~~--~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~t~~~~--~~~gw~~TGDlg~ 531 (695)
.. ...+++|+|++|++++|+| +++..++.++ .|||+|+| |+++.|||++++.+.+.+ ..+|||+|||+|+
T Consensus 424 ~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~---~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~ 499 (643)
T d1pg4a_ 424 GAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGAR 499 (643)
T ss_dssp TTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEE
T ss_pred CccCCCCCccccccCCCEEEEEC-CCCCCCCCCc---eEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEE
Confidence 43 5678999999999999999 5667677665 89999999 578999999999888765 4589999999999
Q ss_pred EecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcc
Q 005468 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYE 608 (695)
Q Consensus 532 ~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~ 608 (695)
+|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ ++.++|+|+++++. .
T Consensus 500 ~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~----------~-- 566 (643)
T d1pg4a_ 500 RDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE----------E-- 566 (643)
T ss_dssp ECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----------C--
T ss_pred ECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCC----------C--
Confidence 9999999999999999997 899999999999999999999999999643 46899999998742 1
Q ss_pred cHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHH
Q 005468 609 NLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADM 681 (695)
Q Consensus 609 ~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~l 681 (695)
.+ ..+.++|+++++ ++|++|++|+.|++++++| +|++|||+|++|++++..+..++
T Consensus 567 ------~~----~~~~~~i~~~~~-~~L~~~~vP~~i~~v~~lP------~T~sGKi~R~~Lr~~~~~~~~~~ 622 (643)
T d1pg4a_ 567 ------PS----PELYAEVRNWVR-KEIGPLATPDVLHWTDSLP------KTRSGKIMRRILRKIAAGDTSNL 622 (643)
T ss_dssp ------CC----HHHHHHHHHHHH-HHTCGGGCCSEEEECSCCC------BCTTSCBCHHHHHHHHHTC----
T ss_pred ------CC----HHHHHHHHHHHH-hhCCcccCccEEEEECCCC------CCCCcCccHHHHHHHhcCCcccc
Confidence 11 234566777776 6899999999999999999 99999999999999997754444
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-76 Score=673.71 Aligned_cols=535 Identities=18% Similarity=0.211 Sum_probs=418.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEccCChhHHHHH
Q 005468 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLIVD 155 (695)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~e~~~~~ 155 (695)
..+..+.+|.++++++||++|+++. ..+.+..+++||+||.+++.++|++|+ ++|+++||+|+|+++|+++|++++
T Consensus 57 ~lN~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~ 133 (640)
T d1ry2a_ 57 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL 133 (640)
T ss_dssp EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred chhHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence 3355688899999999999999986 444456788999999999999999997 679999999999999999999999
Q ss_pred HHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccch---------hHHHhcccCCCCceEEEEECCCCCCCCCCC
Q 005468 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPSLP 226 (695)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~ 226 (695)
|||+++|++++|+++.++++++.++++++++++++++.... ..+.........+.....+..........
T Consensus 134 lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 212 (640)
T d1ry2a_ 134 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF- 212 (640)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-
T ss_pred HHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccc-
Confidence 99999999999999999999999999999999999986432 23333344455555555554433211111
Q ss_pred cCCCceEeeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhc-cccccCCCcEEEEeCC
Q 005468 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT-LGTKFYPSDVYISYLP 305 (695)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~l~~~p 305 (695)
.......+...... ........+..++|+++|+|||||||.||||+++|++++....... ..+.+.++|++++++|
T Consensus 213 --~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~p 289 (640)
T d1ry2a_ 213 --HAPRDLDWATEKKK-YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGD 289 (640)
T ss_dssp --CSSSEEEHHHHHTT-SCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSC
T ss_pred --cccccccccccccc-cccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccc
Confidence 11112223332222 2223344556789999999999999999999999999877655443 3467889999999999
Q ss_pred hhhHHHHHH-HHHHHHcCcEEeEec-----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 005468 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (695)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~~~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (695)
++|+++... ++.+|+.|+++++++ .++..+++.|+++++|++.++|++++.|.+....
T Consensus 290 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------- 353 (640)
T d1ry2a_ 290 IGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS---------------- 353 (640)
T ss_dssp TTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT----------------
T ss_pred hhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcccc----------------
Confidence 999999876 567899999988876 2788999999999999999999999877541100
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---CccccccccccccccccccC
Q 005468 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQLD 456 (695)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~~ 456 (695)
. ......++||.+++||+++++++.+++.+.+| ++++++||+||++..++...
T Consensus 354 -------------~-----------~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~ 409 (640)
T d1ry2a_ 354 -------------Y-----------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL 409 (640)
T ss_dssp -------------S-----------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECC
T ss_pred -------------c-----------cccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccccccccccccc
Confidence 0 00111258999999999999999999999986 46899999999987666544
Q ss_pred CCC---CCCCCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeC--CccchhccCChhhhhccc--CCCCeeecccE
Q 005468 457 EGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGDI 529 (695)
Q Consensus 457 ~~~---~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~t~~~~--~~~gw~~TGDl 529 (695)
... ...+++|.|++|++++|+|.+++....... ..|||+++| |+++.|||++++.|.+.| +.+|||+|||+
T Consensus 410 ~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~--~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDl 487 (640)
T d1ry2a_ 410 AGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDG 487 (640)
T ss_dssp TTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEE
T ss_pred CCCcCCCCCcccccccCCceEEEEeCCCCcccCCCC--ceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCc
Confidence 433 567899999999999999965544433332 369999998 689999999999999887 45699999999
Q ss_pred EEEecCCcEEEEecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCC
Q 005468 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQ 606 (695)
Q Consensus 530 g~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~ 606 (695)
|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|+|.++ ++.++|+|++.++.......
T Consensus 488 g~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~----- 561 (640)
T d1ry2a_ 488 AAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTAT----- 561 (640)
T ss_dssp EEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--------------
T ss_pred eeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccc-----
Confidence 999999999999999999996 899999999999999999999999999653 56899999998854211100
Q ss_pred cccHHHhhCCHHHHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHHHHHH
Q 005468 607 YENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYA 683 (695)
Q Consensus 607 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~~ly~ 683 (695)
++..+.+.++|.++++ ++|++|++|+.|++++++| +|++|||+|++|++++..+.+++.+
T Consensus 562 ----------~~~~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~lP------~T~sGKi~R~~Lr~~~~~~~~~~~d 621 (640)
T d1ry2a_ 562 ----------DDELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDLP------KTRSGKIMRRILRKILAGESDQLGD 621 (640)
T ss_dssp -------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCCC------BCTTSCBCHHHHHHSCC--------
T ss_pred ----------hHHHHHHHHHHHHHHH-hhCCCCCCceEEEEeCCCC------CCCCcCccHHHHHHHHhCCccccCC
Confidence 0111234667777776 7899999999999999999 9999999999999999888777765
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.3e-75 Score=650.82 Aligned_cols=501 Identities=24% Similarity=0.305 Sum_probs=389.2
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..||+++|+++++++||++|+.+. + .++.+++||+||++++.++|++|.+.|+++||+|+|+++|+++|++++||
T Consensus 10 ~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 84 (534)
T d1v25a_ 10 ELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 84 (534)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 458999999999999999999876 2 34567899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++.+++.++++.+++++++++.............++.++.++......... .....
T Consensus 85 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 154 (534)
T d1v25a_ 85 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEG----------YLAYE 154 (534)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTT----------CEEHH
T ss_pred HHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccc----------ccccc
Confidence 99999999999999999999999999999999999998888888777777777777654432110 01111
Q ss_pred HHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcc--ccccCCCcEEEEeCChhhHHHHHHH
Q 005468 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--GTKFYPSDVYISYLPLAHIYERANQ 315 (695)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~--~~~~~~~d~~l~~~pl~h~~~~~~~ 315 (695)
.. .....+.....++++++|+|||||||.||||+++|.+++........ .+....+|++++++|++|.+++...
T Consensus 155 ~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~ 230 (534)
T d1v25a_ 155 EA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 230 (534)
T ss_dssp HH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHH
T ss_pred cc----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhcccccc
Confidence 11 11122344567889999999999999999999999999876654433 3567789999999999999999998
Q ss_pred HHHHHcCcEEeEec--CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcCCCC
Q 005468 316 VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (695)
Q Consensus 316 ~~~l~~G~~~~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (695)
+..+..|+++++.. .++..+...+.++++|++.++|+++..+.+.....
T Consensus 231 ~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~----------------------------- 281 (534)
T d1v25a_ 231 YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST----------------------------- 281 (534)
T ss_dssp HHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-----------------------------
T ss_pred ceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccc-----------------------------
Confidence 88888888777765 68999999999999999999999999887642211
Q ss_pred CchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----------CCC
Q 005468 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLS 462 (695)
Q Consensus 394 ~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----------~~~ 462 (695)
....++||.+++||++++++..+++++ +|.+++++||+||++..++...... ...
T Consensus 282 -------------~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (534)
T d1v25a_ 282 -------------GHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 347 (534)
T ss_dssp -------------TCCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHH
T ss_pred -------------cccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCcccccccc
Confidence 112268999999999999999999886 5899999999999998777654332 124
Q ss_pred CCcCCCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEe
Q 005468 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (695)
Q Consensus 463 ~~vG~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (695)
+++|+|+||++++|+| ++++.++.+.. +.|||+|+|++++.|||++++.|.+.|..||||+|||+|++|+||+++++|
T Consensus 348 ~~~G~p~~g~~~~i~d-~~~~~~~~~~~-~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~G 425 (534)
T d1v25a_ 348 AKTGLPIPLVRLRVAD-EEGRPVPKDGK-ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKD 425 (534)
T ss_dssp TSCBEECTTCEEEEEC-TTSCBCCSSSC-CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEE
T ss_pred ccceeccCCcEEEEEC-CCCCCCCCCCC-eeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEec
Confidence 7899999999999999 55665554321 389999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHH
Q 005468 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRA 619 (695)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (695)
|+||+||+ +|++|+|.+||++|.+||+|.||+|+|.++ ++.++|+|+++.+...
T Consensus 426 R~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~---------------------- 482 (534)
T d1v25a_ 426 RLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPT---------------------- 482 (534)
T ss_dssp ESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------------------------------
T ss_pred ccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCC----------------------
Confidence 99999996 899999999999999999999999998643 4578999988764210
Q ss_pred HHHHHHHHH-HHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHH
Q 005468 620 RAAVLADMD-SLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAK 676 (695)
Q Consensus 620 ~~~i~~~l~-~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~ 676 (695)
.+++. .+++ .+|+.|++|+.|++++++| +|++|||+|++|+++|++
T Consensus 483 ----~~~~~~~~~~-~~l~~~~~P~~i~~~~~lP------~t~~GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 483 ----PEELNEHLLK-AGFAKWQLPDAYVFAEEIP------RTSAGKFLKRALREQYKN 529 (534)
T ss_dssp ----------------CCCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred ----HHHHHHHHHH-hcCCcCCCccEEEEECCCC------CCCCccccHHHHHHHHHh
Confidence 11222 2343 6899999999999999999 999999999999998864
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=7.2e-74 Score=639.73 Aligned_cols=509 Identities=22% Similarity=0.294 Sum_probs=408.7
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
..|+.++|.+++++|+++++.+.. .|+. ..+.+||+||++++.++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 16 ~~t~~~~l~~~~~~~~~~P~~~a~--~d~~--~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA 91 (541)
T d1lcia_ 16 DGTAGEQLHKAMKRYALVPGTIAF--TDAH--IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLG 91 (541)
T ss_dssp SSCHHHHHHHHHHHHHTSTTCEEE--EETT--TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHH
T ss_pred CCCHHHHHHHHHHhhCCCCCeEEE--EeCC--CCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 358999999999999555543322 1221 125699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|+++||+++.++.+++.++|++++++++|++.+..+.+.+....++.++.+++++...+. .....+.
T Consensus 92 ~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 162 (541)
T d1lcia_ 92 ALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSMY 162 (541)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBEEHH
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccc---------cccchhh
Confidence 9999999999999999999999999999999999999988888888888888888887654321 1123333
Q ss_pred HHHhccc------cCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccc---cccCCCcEEEEeCChhh
Q 005468 238 NLLSQGR------SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLAH 308 (695)
Q Consensus 238 ~~~~~~~------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h 308 (695)
+...... ....+.....++++++|+|||||||.||||++||++++......... ..+.+++++++++|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 242 (541)
T d1lcia_ 163 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242 (541)
T ss_dssp HHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred hhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccc
Confidence 3332211 11222344567899999999999999999999999998876665543 45778999999999999
Q ss_pred HHHHHHHHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005468 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (695)
Q Consensus 309 ~~~~~~~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~ 387 (695)
.++....+..+..|+..+... .+.......+..+++|.++++|.++..+......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~------------------------ 298 (541)
T d1lcia_ 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI------------------------ 298 (541)
T ss_dssp HHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG------------------------
T ss_pred cccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccc------------------------
Confidence 999998888887887777665 7889999999999999999999999887652110
Q ss_pred hcCCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-ccccccccccccccccccCCCCCCCCCcC
Q 005468 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (695)
Q Consensus 388 ~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (695)
......++|.+++||+++++...+++.+.++. .++++||+||+++.++.....+...+++|
T Consensus 299 ------------------~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG 360 (541)
T d1lcia_ 299 ------------------DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVG 360 (541)
T ss_dssp ------------------GGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCB
T ss_pred ------------------cccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCCCccc
Confidence 01112589999999999999999999998875 58899999999998888887788889999
Q ss_pred CCccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCC
Q 005468 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (695)
Q Consensus 467 ~p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (695)
+|+|+++++|+|.+++..++.|+ .|||+|+|++++.|||++++.+...+..+|||+|||+|++|+||+++++||.||
T Consensus 361 ~p~~~~~~~i~d~d~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d 437 (541)
T d1lcia_ 361 KVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 437 (541)
T ss_dssp EECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----
T ss_pred cccCCCEEEEEECCCCcCCCCCC---eEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecC
Confidence 99999999999988888888887 899999999999999999999999998899999999999999999999999999
Q ss_pred eeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHH
Q 005468 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAV 623 (695)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (695)
+||+ +|++|+|.+||++|.+||+|.+|+|++.++ ++.++|+|++.++. .+.
T Consensus 438 ~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~~----------------- 491 (541)
T d1lcia_ 438 LIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK--------TMT----------------- 491 (541)
T ss_dssp CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC-----------------
T ss_pred EEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCC--------CCC-----------------
Confidence 9997 899999999999999999999999998542 45788999987632 111
Q ss_pred HHHHHHHHHhcCCCCc-ceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHH
Q 005468 624 LADMDSLGREAQLRGF-EFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKA 677 (695)
Q Consensus 624 ~~~l~~~~~~~~l~~~-~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~ 677 (695)
.++|+++++ ++|.++ ++|..|++++++| +|++|||+|++|++++.++
T Consensus 492 ~~~l~~~~~-~~l~~~~~~p~~i~~v~~lP------~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 492 EKEIVDYVA-SQVTTAKKLRGGVVFVDEVP------KGLTGKLDARKIREILIKA 539 (541)
T ss_dssp HHHHHHHHH-HHSCGGGSCTTEEEEESSCC------C-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCccccCCcEEEEeCCCC------cCCCcCccHHHHHHHHHHh
Confidence 344555665 456665 4789999999999 9999999999999998764
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.5e-70 Score=608.80 Aligned_cols=475 Identities=19% Similarity=0.253 Sum_probs=398.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 005468 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (695)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~ 154 (695)
.|...||.++|+++|+++||++|+++. + +.+||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 19 ~~~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~ 89 (514)
T d1amua_ 19 YPRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 89 (514)
T ss_dssp CCTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHH
Confidence 457789999999999999999999863 2 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 005468 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (695)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (695)
+|||+++|++++|+++.++.+++.+++++++++++|++......+...... .. ........
T Consensus 90 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~-~~~~~~~~--------------- 150 (514)
T d1amua_ 90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN---GQ-VEIFEEDT--------------- 150 (514)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC---SE-EEECCCST---------------
T ss_pred HHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc---cc-cccccccc---------------
Confidence 999999999999999999999999999999999999998877665443221 11 11111100
Q ss_pred eHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHHH
Q 005468 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (695)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~ 314 (695)
...........+..++++++|+|||||||.||+|++||.++..........+....+|++++.+|++|.+++..
T Consensus 151 ------~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 224 (514)
T d1amua_ 151 ------IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE 224 (514)
T ss_dssp ------TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH
T ss_pred ------ccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccc
Confidence 01111122334567899999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHcCcEEeEec----CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcC
Q 005468 315 QVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (695)
Q Consensus 315 ~~~~l~~G~~~~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (695)
.+.++..|+++++.. .+....++.+....++.+..+|.......
T Consensus 225 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 272 (514)
T d1amua_ 225 MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD-------------------------------- 272 (514)
T ss_dssp HHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC--------------------------------
T ss_pred ccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc--------------------------------
Confidence 888999999988865 46778888999999999999987543211
Q ss_pred CCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC---CCCCCcCC
Q 005468 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVGS 467 (695)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~ 467 (695)
.....+++.+++||+++++++.+++.+ ++.+++.||+||++.+++...... ...++.|.
T Consensus 273 ----------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
T d1amua_ 273 ----------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGA 334 (514)
T ss_dssp ----------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBE
T ss_pred ----------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccCccccccc
Confidence 011258999999999999999987765 678999999999998776555443 34567889
Q ss_pred CccCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhccc------CCCCeeecccEEEEecCCcEEEE
Q 005468 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI------DEDGWFHTGDIGMWIPGGRLKII 541 (695)
Q Consensus 468 p~~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~------~~~gw~~TGDlg~~~~dG~l~i~ 541 (695)
+.++.++.+.| +++..++.|+ .|||+|+||++++|||++++.+.+.| +.+|||+|||+|++|+||+|+|+
T Consensus 335 ~~~~~~v~~~d-~~~~~~~~g~---~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~ 410 (514)
T d1amua_ 335 PIQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 410 (514)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEE
T ss_pred ceeeeeEeeec-ccceecCCCC---eeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEE
Confidence 99999999999 7777788886 89999999999999999999998887 35789999999999999999999
Q ss_pred ecCCCeeecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHH
Q 005468 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPR 618 (695)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (695)
||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.++ ++.++|+|+++++ ..
T Consensus 411 GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~----------~~------------ 467 (514)
T d1amua_ 411 GRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH----------IP------------ 467 (514)
T ss_dssp EEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC----------CC------------
T ss_pred ecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCC----------CC------------
Confidence 999999997 899999999999999999999999999643 4688999999873 11
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHH
Q 005468 619 ARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQ 672 (695)
Q Consensus 619 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~ 672 (695)
.++|+++++ ++|++|++|..|++++++| +|++|||+|++|++
T Consensus 468 -----~~~l~~~~~-~~l~~~~~p~~i~~v~~lP------~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 468 -----LEQLRQFSS-EELPTYMIPSYFIQLDKMP------LTSNGKIDRKQLPE 509 (514)
T ss_dssp -----HHHHHHHHH-HHSCGGGSCSEEEECSSCC------BCTTSSBCGGGSCC
T ss_pred -----HHHHHHHHH-hhCCcccCceEEEEeCCCC------CCCCcChhHHhcCC
Confidence 345666665 6799999999999999999 99999999999876
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=4e-70 Score=608.51 Aligned_cols=498 Identities=20% Similarity=0.252 Sum_probs=410.6
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 005468 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (695)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (695)
.|+.++|+++|+++||++|+.+. + +.+||+||+++++++|++|.++|+++||+|+|+++|+++|++++|||
T Consensus 25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~ 95 (536)
T d1mdba_ 25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL 95 (536)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence 59999999999999999999864 2 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHH-----HhcccCCCCceEEEEECCCCCCCCCCCcCCCceE
Q 005468 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL-----LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (695)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~-----~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (695)
+++|+++||+++.++.+++.+++++++++++++++...... .......+.+...+...... ..
T Consensus 96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 163 (536)
T d1mdba_ 96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------EF 163 (536)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------TS
T ss_pred HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------cc
Confidence 99999999999999999999999999999999986443211 11111223333333322211 11
Q ss_pred eeHHHHHhccccCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhccccccCCCcEEEEeCChhhHHHHH
Q 005468 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (695)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~ 313 (695)
..++++ ...+....+..++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++.+|++|.+++.
T Consensus 164 ~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~ 239 (536)
T d1mdba_ 164 LPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLS 239 (536)
T ss_dssp EEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccccccccccccccccccccccee
Confidence 222222 1222334456789999999999999999999999999999999888888999999999999999999987
Q ss_pred H-HHH-HHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcC
Q 005468 314 N-QVM-TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (695)
Q Consensus 314 ~-~~~-~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (695)
. .+. .+..|++++..+ +++..++..+++++++.+..+|..+..+.......
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 293 (536)
T d1mdba_ 240 SPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------------- 293 (536)
T ss_dssp SSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------------
T ss_pred eccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccc--------------------------
Confidence 5 333 445567666655 79999999999999999999999998876532211
Q ss_pred CCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-CCCCCcCCCc
Q 005468 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPN 469 (695)
Q Consensus 391 ~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~ 469 (695)
....++++.+++||+++++...+++.+.+|......||.+|.+..+....... ...+++|.|+
T Consensus 294 ----------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~ 357 (536)
T d1mdba_ 294 ----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPM 357 (536)
T ss_dssp ----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEES
T ss_pred ----------------ccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccccCCcccCC
Confidence 11125889999999999999999999999999999999999876555443322 4567899998
Q ss_pred cCcEEEEeecCCCCCCCCCCCCCcceEEEeCCccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCeee
Q 005468 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (695)
Q Consensus 470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (695)
++....+++.++++.++.++ .|||+++|+.++.||+++++.+...++.+|||+|||+|++++||+|+++||+||+||
T Consensus 358 ~~~~~~~v~~~~g~~~~~~~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~ 434 (536)
T d1mdba_ 358 SPYDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN 434 (536)
T ss_dssp STTCEEEEECTTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEE
T ss_pred CCcceEEEEcCCCCeecccc---cceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEE
Confidence 76666666657777777776 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHHH
Q 005468 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLAD 626 (695)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 626 (695)
+ +|++|+|.+||++|.+||+|.+|+|+|..+ ++.++|+|++.++. .. .++
T Consensus 435 ~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~---------~~-----------------~~~ 487 (536)
T d1mdba_ 435 R-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------PK-----------------AAE 487 (536)
T ss_dssp C-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------CC-----------------HHH
T ss_pred E-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCC---------CC-----------------HHH
Confidence 6 899999999999999999999999998543 45789999987632 11 345
Q ss_pred HHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHHHHHHH
Q 005468 627 MDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIA 679 (695)
Q Consensus 627 l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~~~~i~ 679 (695)
|+++++++.|+.|++|+.|++++++| +|++|||+|++|+++|+++|.
T Consensus 488 l~~~l~~~~l~~~~~P~~i~~v~~lP------~t~~GKi~r~~L~~~~~~~l~ 534 (536)
T d1mdba_ 488 LKAFLRERGLAAYKIPDRVEFVESFP------QTGVGKVSKKALREAISEKLL 534 (536)
T ss_dssp HHHHHHHTTCCGGGSCSEEEECSSCC------BCTTSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcCcCccEEEEECCCC------cCCCcCccHHHHHHHHHHHHh
Confidence 56666555799999999999999999 999999999999999998775
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=8.8e-66 Score=567.90 Aligned_cols=490 Identities=18% Similarity=0.207 Sum_probs=395.9
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEeeecCccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 005468 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (695)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~e~~~~~lA 157 (695)
++|++++|+++|+++||++|+.+. +.. +++||+||.+++.++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 73 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 479999999999999999999875 332 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEeccCCCCHHHHHHHHHhccccEEEecccchhHHHhcccCCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 005468 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (695)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (695)
|+++|++++|+++.++++++.+++++++++++|++...... ..........+ ++ .+.
T Consensus 74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~-~i---------------------~~~ 130 (503)
T d3cw9a1 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA-DAIFQSGSGAR-II---------------------FLG 130 (503)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHH-HHHHHTTCCCE-EE---------------------EHH
T ss_pred HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHH-HHHhhhccccc-cc---------------------cch
Confidence 99999999999999999999999999999999998654221 11111222222 22 223
Q ss_pred HHHhccc----cCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHHHhhcccc--ccCCCcEEEEeCChhhHHH
Q 005468 238 NLLSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT--KFYPSDVYISYLPLAHIYE 311 (695)
Q Consensus 238 ~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~~ 311 (695)
++...+. ..+......+++++++++|||||||.||+|+++|+++.+.+......+ .....+++++.+|++|.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (503)
T d3cw9a1 131 DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210 (503)
T ss_dssp HHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHH
T ss_pred hhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccc
Confidence 3322211 112233456789999999999999999999999999998887766543 4456689999999999888
Q ss_pred HHH-HHHHHHcCcEEeEec-CChhhHHHHHHhcCCeEEeechHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Q 005468 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (695)
Q Consensus 312 ~~~-~~~~l~~G~~~~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (695)
... .+.+...++.+++.. +++..+...+..++++++..+|..+..+........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 266 (503)
T d3cw9a1 211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG------------------------ 266 (503)
T ss_dssp HHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTC------------------------
T ss_pred cccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccc------------------------
Confidence 876 445666666666655 799999999999999999999999887765322111
Q ss_pred CCCCCchhHHHHHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCc
Q 005468 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (695)
Q Consensus 390 ~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (695)
.....++||.+++||++++++...++...++..+.+.||+||++..+...........+.+.+.
T Consensus 267 ----------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~ 330 (503)
T d3cw9a1 267 ----------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFS 330 (503)
T ss_dssp ----------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSEEBCCTTC
T ss_pred ----------------ccccccceEEEEeccccccccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence 1112258999999999999999999999999999999999999887776665555555555555
Q ss_pred cCcEEEEeecCCCCCCCCCCCCCcceEEEeC-CccchhccCChhhhhcccCCCCeeecccEEEEecCCcEEEEecCCCee
Q 005468 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRG-PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIF 548 (695)
Q Consensus 470 ~~~~v~i~d~~~~~~~~~~~~~~~GEl~v~g-~~v~~gY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~i 548 (695)
+.....+.+ ..+..++.|+ .|++++.+ +....||+++++.|.+.| .+|||+|||+|++|+||.|+++||+||+|
T Consensus 331 ~~~~~~~~~-~~~~~~~~g~---~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~i 405 (503)
T d3cw9a1 331 EVRIVRIGG-GVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405 (503)
T ss_dssp CEEEECTTS-CTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCE
T ss_pred cceeeeeec-ccCcccCCCc---cccccccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeE
Confidence 544444443 5556666665 78777765 466778999999999999 78999999999999999999999999999
Q ss_pred ecCCeeeechHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEEeCHHHHHHHHHHcCCCcccHHHhhCCHHHHHHHHH
Q 005468 549 KLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLA 625 (695)
Q Consensus 549 kl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 625 (695)
|+ +|++|+|.+||++|.+||+|.+|+|+|.++ ++.++|+|++.++. ..+ .+
T Consensus 406 k~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~~-----------------~~ 459 (503)
T d3cw9a1 406 IS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TLS-----------------AD 459 (503)
T ss_dssp EE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CCC-----------------HH
T ss_pred EE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCC--------CCC-----------------HH
Confidence 97 899999999999999999999999999643 35799999987632 111 45
Q ss_pred HHHHHHHhcCCCCcceeeEEEEeecCCCCCCCccCccccCChHHHHHHH
Q 005468 626 DMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYF 674 (695)
Q Consensus 626 ~l~~~~~~~~l~~~~~p~~i~~~~~~p~~~~~~~t~~gKi~R~~l~~~~ 674 (695)
+|++++++.+|+.|++|+.|++++++| +|++|||+|++|++++
T Consensus 460 ~l~~~~~~~~l~~~~~P~~i~~v~~~P------~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 460 ALDTFCRSSELADFKRPKRYFILDQLP------KNALNKVLRRQLVQQV 502 (503)
T ss_dssp HHHHHHHHSSSCGGGSCSEEEECSCCC------BCTTSCBCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCccEEEEECCCC------cCCCcCccHHHHHHhc
Confidence 666677667899999999999999999 9999999999999875
|