Citrus Sinensis ID: 005469

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-----

MASTEQEISRAARVQYYTTTDDDSDDKEEEEEEMVDEEEQEEEEGEVEERCKNGRRRDMFSGICGRRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF

ccccHHHHcccccEEEccccccccccccccHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccEEEEEcccEEEEEEEHHHHHHHHHHHHHHHHHcEEEEccccccccccccccccccccccccHHHHHHHccccccEEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccEEEEccccccEEEEEEEcEEEEEEEEccccEEEEECccccCCcccHHHHHcccccccccccccccEEEEEEEcccccccccHHHHHHHcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHcccccccccccccc

****************************************************************GR**RS*WSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS**************G*DRLRLYTALL************

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MASTEQEISRAARVQYYTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERCKNGRRRDMFSGICGRRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Cyclic nucleotide-gated ion channel 4	Acts as cyclic nucleotide-gated ion channel. Permeable to potassium and sodium in a cyclic nucleotide-dependent fashion (cAMP or cGMP). Might constitute a common downstream component of the signaling pathways leading to hypersensitive response (HR).	confident	Q94AS9

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1WGP, chain A
Confidence level:very confident
Coverage over the Query: 491-614
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View the model in PyMOL

Template: 2PTM, chain A
Confidence level:very confident
Coverage over the Query: 423-618
View the alignment between query and template
View the model in PyMOL

Template: 3BEH, chain A
Confidence level:very confident
Coverage over the Query: 366-425,454-457,488-491
View the alignment between query and template
View the model in PyMOL

Template: 3IWZ, chain A
Confidence level:confident
Coverage over the Query: 502-658
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View the model in PyMOL

Template: 2R9R, chain B
Confidence level:confident
Coverage over the Query: 67-152,168,181-286,330-331,361-427
View the alignment between query and template
View the model in PyMOL