Citrus Sinensis ID: 005469

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-----
MASTEQEISRAARVQYYTTTDDDSDDKEEEEEEMVDEEEQEEEEGEVEERCKNGRRRDMFSGICGRRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF
ccccHHHHcccccEEEcccccccccccccHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccEEEEEcccEEEEEEEHHHHHHHHHHHHHHHHHcEEEEccccccccccccccccccccccccHHHHHHHccccccEEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccEEEEccccccEEEEEEEcEEEEEEEEccccEEEEEEccccEEcccHHHHHcccccccccccccccEEEEEEEcccccccccHHHHHHHcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHcccccccccccccc
cccccccccHHHHEEEccccccccHHHHcccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccHHHHHHHHHHccccEEEEHHHHccccHEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccccccccccccccccccccccccccccccccEEHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEEEEEEEEccccccEEEEEcccccccHHHHHHHHcccccccccccccHHHHEHHHHHHHEccHHHHHHHHHHHHHHHccHHHHHHEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccEEEEEEEccccccccccc
MASTEQEISRAARVQYYtttdddsddkeeeeeemvdeeeqeeeeGEVEERckngrrrdmfsgicgrrrrsnwsfgqvldPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAaygvggaaaaaddedkrprsgphsRSVALRYMKAKKGFFFDlfvilplpqiVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCRemngcdlrllsckepiyygttdMVRDRARLAWAENKQARSTciessnnydygaYKWTVQLVTNVSRLEKILFPIFWGlmtlstfgnlesTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTkgevitkegdpvQRMLFVVRGHLQSSQILHNNIksccmlgpgnfsgdellswclrrpfierlppssstlitletteafgleaedvKYVTQHFRYTFVKEKVKRSaryyspgwRTWAAVAIQLAWRRYKHRltltslsfirprrplsrcsslgEDRLRLYTALltspkpnqddfdf
MASTEQEIsraarvqyytttdddsddkeEEEEEmvdeeeqeeeegeveerckngrrrdmfsgicgrrrrsnwsfgqvLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAaaaaddedkrprsgpHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREmngcdlrllscKEPIYYGTTDMVRDRARLAWAENKQarstciessnnydyGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWwmrkrqlpqgfrqrVRNYERQRWAamrgvdecemISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTkgevitkegdpVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIerlppssstliTLETTEAFGLEAEDVKYVTQHFRYTfvkekvkrsaryyspgwrtWAAVAIQLAWRRYKHRLTltslsfirprrplsrcsslgedRLRLYTalltspkpnqddfdf
MASTEQEISRAARVQYYTTTdddsddkeeeeeemvdeeeqeeeegeveeRCKNGRRRDMFSGICGRRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKaaygvggaaaaaDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERlppssstlitletteAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIrprrplsrcsslGEDRLRLYTALLTSPKPNQDDFDF
***********************************************************FSGICGRRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGA*******************VALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALL************
**************************************************************************GQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCL************STLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRR*************************************************
MASTEQEISRAARVQYY**********************************KNGRRRDMFSGICGRRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYG**********************SVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF
********S******Y************************************************GR**RS*WSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS**************G*DRLRLYTALLTSPK********
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MASTEQEISRAARVQYYTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERCKNGRRRDMFSGICGRRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query695 2.2.26 [Sep-21-2011]
Q94AS9694 Cyclic nucleotide-gated i yes no 0.902 0.903 0.800 0.0
O65718726 Cyclic nucleotide-gated i no no 0.877 0.840 0.505 1e-175
Q9SL29678 Putative cyclic nucleotid no no 0.8 0.820 0.370 1e-109
Q9SJA4726 Probable cyclic nucleotid no no 0.804 0.769 0.380 1e-104
O65717716 Cyclic nucleotide-gated i no no 0.781 0.758 0.360 1e-103
Q8L7Z0720 Probable cyclic nucleotid no no 0.820 0.791 0.356 1e-102
Q8RWS9717 Probable cyclic nucleotid no no 0.801 0.776 0.363 1e-100
Q9LEQ3706 Putative cyclic nucleotid no no 0.810 0.797 0.366 1e-100
Q9SU64705 Probable cyclic nucleotid no no 0.814 0.802 0.349 1e-100
Q9FXH6753 Putative cyclic nucleotid no no 0.789 0.729 0.353 2e-99
>sp|Q94AS9|CNGC4_ARATH Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2 Back     alignment and function desciption
 Score = 1051 bits (2717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/637 (80%), Positives = 562/637 (88%), Gaps = 10/637 (1%)

Query: 64  CGRRRRSNWS------FGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCM 117
           CG RR  + +       G++LDPR+KWV+EWN+VFLLVCATGLFVDPLF Y LS+S+TCM
Sbjct: 60  CGGRRNGSSNNNKWMMLGRILDPRSKWVREWNKVFLLVCATGLFVDPLFLYTLSVSDTCM 119

Query: 118 CLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPHS 177
           CL VDGW A+TVTALR MTDLLH+WN+W+Q K+ +     GG +    ++    R    S
Sbjct: 120 CLLVDGWLALTVTALRSMTDLLHLWNIWIQFKIARRWPYPGGDSDGDTNKGGGTRG---S 176

Query: 178 RSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLPK 237
             VA  Y+K K GFFFDLFVILPLPQ+VLWVVIP+LL+RGS+TLV++V L+ FLFQYLPK
Sbjct: 177 TRVAPPYVK-KNGFFFDLFVILPLPQVVLWVVIPSLLKRGSVTLVVSVLLVTFLFQYLPK 235

Query: 238 IYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQC 297
           IYHS+  LRR   LSGYIFGTVWWGI LNMIAYFVA+HAAGACWYLLG+QRSAKCL+EQC
Sbjct: 236 IYHSIRHLRRNATLSGYIFGTVWWGIALNMIAYFVAAHAAGACWYLLGVQRSAKCLKEQC 295

Query: 298 REMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQ 357
               GCDLR+LSCKEP+YYGTT MV DRARLAWA+N QARS C++ + NY YGAY+WT+Q
Sbjct: 296 ENTIGCDLRMLSCKEPVYYGTTVMVLDRARLAWAQNHQARSVCLDINTNYTYGAYQWTIQ 355

Query: 358 LVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKV 417
           LV++ SRLEKILFPIFWGLMTLSTFGNLESTTEW EVVFNIIVLTSGLLLVTMLIGNIKV
Sbjct: 356 LVSSESRLEKILFPIFWGLMTLSTFGNLESTTEWSEVVFNIIVLTSGLLLVTMLIGNIKV 415

Query: 418 FLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLP 477
           FLHATTSKKQAM LKMRNIEWWM+KR LP GFRQRVRNYERQRWAAMRGVDECEM+ NLP
Sbjct: 416 FLHATTSKKQAMHLKMRNIEWWMKKRHLPIGFRQRVRNYERQRWAAMRGVDECEMVQNLP 475

Query: 478 EGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLF 537
           EGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGE I KEGD VQRMLF
Sbjct: 476 EGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLF 535

Query: 538 VVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEA 597
           VVRGHLQSSQ+L + +KSCCMLGPGNFSGDELLSWCLRRPF+ERLPPSSSTL+TLETTEA
Sbjct: 536 VVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEA 595

Query: 598 FGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS 657
           FGL+AEDVKYVTQHFRYTFV EKVKRSARYYSPGWRTWAAVA+QLAWRRYKHRLTLTSLS
Sbjct: 596 FGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLS 655

Query: 658 FIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFD 694
           FIRPRRPLSRC+SLGED+LRLY A+LTSPKPN DDFD
Sbjct: 656 FIRPRRPLSRCASLGEDKLRLYAAILTSPKPNPDDFD 692
Acts as cyclic nucleotide-gated ion channel. Permeable to potassium and sodium in a cyclic nucleotide-dependent fashion (cAMP or cGMP). Might constitute a common downstream component of the signaling pathways leading to hypersensitive response (HR).
Arabidopsis thaliana (taxid: 3702)
>sp|O65718|CNGC2_ARATH Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 Back     alignment and function description
>sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 Back     alignment and function description
>sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L7Z0|CNG17_ARATH Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LEQ3|CNG18_ARATH Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=3 SV=1 Back     alignment and function description
>sp|Q9SU64|CNG16_ARATH Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query695
255569589687 Cyclic nucleotide-gated ion channel, put 0.978 0.989 0.820 0.0
224123014635 predicted protein [Populus trichocarpa] 0.912 0.998 0.862 0.0
359493899667 PREDICTED: cyclic nucleotide-gated ion c 0.910 0.949 0.829 0.0
356515024691 PREDICTED: cyclic nucleotide-gated ion c 0.968 0.973 0.781 0.0
356545139690 PREDICTED: cyclic nucleotide-gated ion c 0.882 0.888 0.832 0.0
356542246683 PREDICTED: cyclic nucleotide-gated ion c 0.979 0.997 0.767 0.0
449521160663 PREDICTED: cyclic nucleotide-gated ion c 0.899 0.942 0.806 0.0
449463150659 PREDICTED: cyclic nucleotide-gated ion c 0.899 0.948 0.805 0.0
297796301694 ATCNGC4 [Arabidopsis lyrata subsp. lyrat 0.902 0.903 0.800 0.0
15239581694 cyclic nucleotide-gated ion channel 4 [A 0.902 0.903 0.800 0.0
>gi|255569589|ref|XP_002525760.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223534910|gb|EEF36596.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1157 bits (2993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/702 (82%), Positives = 614/702 (87%), Gaps = 22/702 (3%)

Query: 1   MASTEQEISRAARVQYYTTTDDDSDDKEEEEEEMVDEEEQEEEEGEVEERCKNGRRRDMF 60
           MAS  QE SRA  +QYYT  DD  +      EE  ++E +EE   +    C+N     +F
Sbjct: 1   MASDNQETSRATHMQYYTDDDDSENGGGGGGEEEEEDEGEEESTRD----CRN----TLF 52

Query: 61  SGICGR----RRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETC 116
             +CG     +R   WS GQVLDPRAKWVQEWNR FLLVCATGLFVDPLFFYALS+S+TC
Sbjct: 53  --MCGAGLVPKRSGGWSLGQVLDPRAKWVQEWNRGFLLVCATGLFVDPLFFYALSVSDTC 110

Query: 117 MCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAAYGVGGAAAAADDEDKRPRSGPH 176
           MCLF+DGWFA+TVTALRCMTD LHVWNMWLQLKM K       +       D   RSGP 
Sbjct: 111 MCLFIDGWFALTVTALRCMTDALHVWNMWLQLKMAKKP-----SIGGGIGGDYGDRSGPR 165

Query: 177 ---SRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQ 233
                SVALRY+KAKKGFFFDLFVILPLPQI+LWV IP+LLE GS+T+VMT+FLI+FLFQ
Sbjct: 166 FSSPSSVALRYLKAKKGFFFDLFVILPLPQIILWVAIPSLLEGGSVTVVMTIFLIIFLFQ 225

Query: 234 YLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCL 293
           YLPKIYHSVCLLRRMQNLSGYIFGTVWWGI LNMIAYFVASHAAGACWYLLGIQR+AKCL
Sbjct: 226 YLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRTAKCL 285

Query: 294 REQCREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYK 353
           +E+CRE  GC LRLLSCKEPIYYGT   VRD ARLAWA+NK AR+TC++SS+NYDYGAYK
Sbjct: 286 KEKCRETQGCGLRLLSCKEPIYYGTASKVRDGARLAWADNKVARATCLDSSDNYDYGAYK 345

Query: 354 WTVQLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIG 413
           WTVQLVTN SRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIG
Sbjct: 346 WTVQLVTNGSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIG 405

Query: 414 NIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMI 473
           NIKVFLHATTSKKQAMQLKMRNIEWWMRKR+LP  FR RVRNYERQRWAAMRGVDECEMI
Sbjct: 406 NIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPPEFRHRVRNYERQRWAAMRGVDECEMI 465

Query: 474 SNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQ 533
            NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGE IT+EGDPVQ
Sbjct: 466 RNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQ 525

Query: 534 RMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLE 593
           RMLFVVRGHLQSSQ+L + +KSCCMLGPGNFSGDELLSWCLRRPFIERLPPSS TL+TLE
Sbjct: 526 RMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLE 585

Query: 594 TTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTL 653
           TTEAFGLEAEDVKYVTQHFRYTFV E+VKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTL
Sbjct: 586 TTEAFGLEAEDVKYVTQHFRYTFVNERVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTL 645

Query: 654 TSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF 695
           TSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQ+DFDF
Sbjct: 646 TSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQEDFDF 687

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123014|ref|XP_002330420.1| predicted protein [Populus trichocarpa] gi|222871805|gb|EEF08936.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493899|ref|XP_003634689.1| PREDICTED: cyclic nucleotide-gated ion channel 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356515024|ref|XP_003526201.1| PREDICTED: cyclic nucleotide-gated ion channel 4-like [Glycine max] Back     alignment and taxonomy information
>gi|356545139|ref|XP_003541002.1| PREDICTED: cyclic nucleotide-gated ion channel 4-like [Glycine max] Back     alignment and taxonomy information
>gi|356542246|ref|XP_003539580.1| PREDICTED: cyclic nucleotide-gated ion channel 4-like [Glycine max] Back     alignment and taxonomy information
>gi|449521160|ref|XP_004167598.1| PREDICTED: cyclic nucleotide-gated ion channel 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449463150|ref|XP_004149297.1| PREDICTED: cyclic nucleotide-gated ion channel 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297796301|ref|XP_002866035.1| ATCNGC4 [Arabidopsis lyrata subsp. lyrata] gi|297311870|gb|EFH42294.1| ATCNGC4 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15239581|ref|NP_200236.1| cyclic nucleotide-gated ion channel 4 [Arabidopsis thaliana] gi|30696428|ref|NP_851188.1| cyclic nucleotide-gated ion channel 4 [Arabidopsis thaliana] gi|38503128|sp|Q94AS9.2|CNGC4_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 4; Short=AtCNGC4; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 4; Short=AtHLM1 gi|4581203|emb|CAB40129.1| cyclic nucleotide and calmodulin-regulated ion channel [Arabidopsis thaliana] gi|9759498|dbj|BAB10748.1| cyclic nucleotide and calmodulin-regulated ion channel [Arabidopsis thaliana] gi|16323174|gb|AAL15321.1| AT5g54250/MDK4_7 [Arabidopsis thaliana] gi|222423088|dbj|BAH19524.1| AT5G54250 [Arabidopsis thaliana] gi|332009090|gb|AED96473.1| cyclic nucleotide-gated ion channel 4 [Arabidopsis thaliana] gi|332009091|gb|AED96474.1| cyclic nucleotide-gated ion channel 4 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query695
TAIR|locus:2162605694 CNGC4 "AT5G54250" [Arabidopsis 0.900 0.902 0.764 2.6e-270
TAIR|locus:2180867726 DND1 "AT5G15410" [Arabidopsis 0.884 0.847 0.487 6e-167
TAIR|locus:2046703726 CNGC14 "cyclic nucleotide-gate 0.810 0.775 0.369 8.7e-95
TAIR|locus:2118816720 CNGC17 "cyclic nucleotide-gate 0.823 0.794 0.349 1.1e-94
TAIR|locus:2185510706 CNGC18 "AT5G14870" [Arabidopsi 0.811 0.798 0.353 8.1e-92
TAIR|locus:2174448717 CNGC5 "cyclic nucleotide gated 0.804 0.779 0.351 7.3e-91
TAIR|locus:2062814678 CNGC15 "cyclic nucleotide-gate 0.669 0.685 0.388 2.5e-90
TAIR|locus:2200502738 CNGC7 "cyclic nucleotide gated 0.802 0.756 0.340 2.8e-89
TAIR|locus:2013139753 CNGC8 "cyclic nucleotide gated 0.8 0.738 0.343 3.6e-89
TAIR|locus:2097860705 CNGC16 "cyclic nucleotide-gate 0.814 0.802 0.349 5.9e-89
TAIR|locus:2162605 CNGC4 "AT5G54250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2586 (915.4 bits), Expect = 2.6e-270, Sum P(2) = 2.6e-270
 Identities = 488/638 (76%), Positives = 533/638 (83%)

Query:    64 CGRRRR--SN---WSF-GQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCM 117
             CG RR   SN   W   G++LDPR+KWV+EWN+VFLLVCATGLFVDPLF Y LS+S+TCM
Sbjct:    60 CGGRRNGSSNNNKWMMLGRILDPRSKWVREWNKVFLLVCATGLFVDPLFLYTLSVSDTCM 119

Query:   118 CLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPH- 176
             CL VDGW A+TVTALR MTDLLH+WN+W+Q K+ +             D D     G   
Sbjct:   120 CLLVDGWLALTVTALRSMTDLLHLWNIWIQFKIARRWPYPGGDS----DGDTNKGGGTRG 175

Query:   177 SRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQYLP 236
             S  VA  Y+K K GFFFDLFVILPLPQ+VLWVVIP+LL+RGS+TLV++V L+ FLFQYLP
Sbjct:   176 STRVAPPYVK-KNGFFFDLFVILPLPQVVLWVVIPSLLKRGSVTLVVSVLLVTFLFQYLP 234

Query:   237 KIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQ 296
             KIYHS+  LRR   LSGYIFGTVWWGI LNMIAYFVA+HAAGACWYLLG+QRSAKCL+EQ
Sbjct:   235 KIYHSIRHLRRNATLSGYIFGTVWWGIALNMIAYFVAAHAAGACWYLLGVQRSAKCLKEQ 294

Query:   297 CREMNGCDLRLLSCKEPIYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTV 356
             C    GCDLR+LSCKEP+YYGTT MV DRARLAWA+N QARS C++ + NY YGAY+WT+
Sbjct:   295 CENTIGCDLRMLSCKEPVYYGTTVMVLDRARLAWAQNHQARSVCLDINTNYTYGAYQWTI 354

Query:   357 QLVTNVSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIK 416
             QLV++ SRLEKILFPIFWGLMTLSTFGNLESTTEW EVVFNIIVLTSGLLLVTMLIGNIK
Sbjct:   355 QLVSSESRLEKILFPIFWGLMTLSTFGNLESTTEWSEVVFNIIVLTSGLLLVTMLIGNIK 414

Query:   417 VFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNL 476
             VFLHATTSKKQAM LKMRNIEWWM+KR LP GFRQRVRNYERQRWAAMRGVDECEM+ NL
Sbjct:   415 VFLHATTSKKQAMHLKMRNIEWWMKKRHLPIGFRQRVRNYERQRWAAMRGVDECEMVQNL 474

Query:   477 PEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRML 536
             PEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGE I KEGD VQRML
Sbjct:   475 PEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRML 534

Query:   537 FVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXX 596
             FVVRGHLQSSQ+L + +KSCCMLGPGNFSGDELLSWCLRRPF+ER               
Sbjct:   535 FVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTE 594

Query:   597 AFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 656
             AFGL+AEDVKYVTQHFRYTFV EKVKRSARYYSPGWRTWAAVA+QLAWRRYKHRLTLTSL
Sbjct:   595 AFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSL 654

Query:   657 SFIXXXXXXXXXXXXGEDRLRLYTALLTSPKPNQDDFD 694
             SFI            GED+LRLY A+LTSPKPN DDFD
Sbjct:   655 SFIRPRRPLSRCASLGEDKLRLYAAILTSPKPNPDDFD 692
GO:0005261 "cation channel activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0016020 "membrane" evidence=IDA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0005516 "calmodulin binding" evidence=TAS
GO:0008324 "cation transmembrane transporter activity" evidence=IDA
GO:0009626 "plant-type hypersensitive response" evidence=IMP
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
TAIR|locus:2180867 DND1 "AT5G15410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185510 CNGC18 "AT5G14870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097860 CNGC16 "cyclic nucleotide-gated channel 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AS9CNGC4_ARATHNo assigned EC number0.80060.90210.9034yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.134.172.1
hypothetical protein (628 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query695
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 4e-12
COG0664214 COG0664, Crp, cAMP-binding proteins - catabolite g 4e-06
smart00100120 smart00100, cNMP, Cyclic nucleotide-monophosphate 1e-05
pfam0002791 pfam00027, cNMP_binding, Cyclic nucleotide-binding 2e-05
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 1e-04
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 3e-04
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 3e-04
pfam03985431 pfam03985, Paf1, Paf1 6e-04
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.002
pfam03247106 pfam03247, Prothymosin, Prothymosin/parathymosin f 0.003
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information 
 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 498 LFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN-NIKSC 556
           LF  +DD  LE + D ++   F  GEVI ++GDP   +  V+ G ++  ++  +   +  
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 557 CMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAED 604
             LGPG+  G+  L             P S+T+  L  +E   L   D
Sbjct: 61  GFLGPGDLFGELALL---------GNGPRSATVRALTDSELLVLPRSD 99

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115
>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|217829 pfam03985, Paf1, Paf1 Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 695
KOG0498 727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
KOG0499815 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.69
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.55
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.51
COG2905 610 Predicted signal-transduction protein containing c 99.45
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.4
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.38
cd00038115 CAP_ED effector domain of the CAP family of transc 99.38
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.36
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.35
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.33
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 99.28
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.27
PRK09391230 fixK transcriptional regulator FixK; Provisional 99.26
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.24
KOG1113368 consensus cAMP-dependent protein kinase types I an 99.23
PLN02868 413 acyl-CoA thioesterase family protein 99.19
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.19
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 99.15
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.99
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 98.86
KOG1419654 consensus Voltage-gated K+ channel KCNQ [Inorganic 98.66
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 98.63
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 98.47
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 98.44
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 98.16
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 97.89
PRK10537393 voltage-gated potassium channel; Provisional 97.67
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.64
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 97.04
PRK11832207 putative DNA-binding transcriptional regulator; Pr 96.73
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 96.71
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 96.67
PF04831153 Popeye: Popeye protein conserved region; InterPro: 96.5
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 96.32
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 96.17
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 94.21
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 92.93
KOG3827400 consensus Inward rectifier K+ channel [Inorganic i 90.97
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 90.36
KOG36141381 consensus Ca2+/Mg2+-permeable cation channels (LTR 90.21
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 86.25
KOG2301 1592 consensus Voltage-gated Ca2+ channels, alpha1 subu 86.04
PLN032231634 Polycystin cation channel protein; Provisional 86.04
COG4709195 Predicted membrane protein [Function unknown] 82.09
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 81.53
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-92  Score=784.16  Aligned_cols=507  Identities=41%  Similarity=0.756  Sum_probs=448.7

Q ss_pred             CcccCCCChhHHhhHHHHHHHHHHHHhhccccceeeeccCCceEEEecCcchhhhhHHHHHHHHHHHHHHHHhhheeeec
Q 005469           75 GQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKAA  154 (695)
Q Consensus        75 ~~vi~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~F~~Di~l~f~tay~~  154 (695)
                      +.|++|+|+|++.||.+++++++|+++++|++++|+...+...|  .|......+++++.++|++|++||+++|+|||++
T Consensus        67 ~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~  144 (727)
T KOG0498|consen   67 KWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVD  144 (727)
T ss_pred             ceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEEC
Confidence            34999999999999999999999999999999999988887778  8888888999999999999999999999999998


Q ss_pred             c-CccccCcccccCCCCCCCCCChHHHHHHhhhcccCchhhHhhhcccchhhhhhccccccccchHHHHHHHHHHHHHHH
Q 005469          155 Y-GVGGAAAAADDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLPQIVLWVVIPALLERGSITLVMTVFLIMFLFQ  233 (695)
Q Consensus       155 ~-~~~~~~G~lv~~d~~~~~~~~~~~Ia~~Yl~sk~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~llr~~~l~~  233 (695)
                      + +.     ++| .|        |++||+||+  |+||++|++|++|+++++.|.++.    ..........+..+.+++
T Consensus       145 ~~s~-----elV-~d--------pk~IA~rYl--~twFiiDlis~lP~~~i~~~~~~~----~~~~~~~~~~l~~il~~~  204 (727)
T KOG0498|consen  145 PSSY-----ELV-DD--------PKKIAKRYL--KTWFLIDLISTLPFDQIVVLVVIG----STSLALESTILVGILLLQ  204 (727)
T ss_pred             CCCc-----eee-eC--------HHHHHHHHH--hhhHHHHHHHhcChhhheeeeeec----ccchhhhHHHHHHHHHHH
Confidence            7 22     466 56        999999999  899999999999999999876651    111122222344555667


Q ss_pred             HHHHHHHHHHHHHHhhcccceehhhHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhHHHhhhccCCCcccccccCCC
Q 005469          234 YLPKIYHSVCLLRRMQNLSGYIFGTVWWGIVLNMIAYFVASHAAGACWYLLGIQRSAKCLREQCREMNGCDLRLLSCKEP  313 (695)
Q Consensus       234 ~l~rl~R~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~H~~aC~w~~i~~~~~~~~~~~~c~~~~~c~~~~l~c~~~  313 (695)
                      ||+|+.|+.++++++++..+++..++|....++++++++++||.||+||++|..+.++||+.+                 
T Consensus       205 rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~-----------------  267 (727)
T KOG0498|consen  205 RLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA-----------------  267 (727)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-----------------
Confidence            999999999999999999999999999987788889999999999999999999988888754                 


Q ss_pred             cccCccccccccchhhhccccccccccccCCCCCcccchhhhhhhhcCchhhhHHHHHHHHHhhhccc--cCCccccccc
Q 005469          314 IYYGTTDMVRDRARLAWAENKQARSTCIESSNNYDYGAYKWTVQLVTNVSRLEKILFPIFWGLMTLST--FGNLESTTEW  391 (695)
Q Consensus       314 ~~yg~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~Y~~slYwa~~TltT--yGDi~p~t~~  391 (695)
                                     +|+......-.|.  +..|+||+|          +++.+|++|+||+++||||  |||++|.|. 
T Consensus       268 ---------------tw~~~l~~~~~~~--~~~~~fg~~----------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~-  319 (727)
T KOG0498|consen  268 ---------------TWLGSLGRLLSCY--NLSFTFGIY----------SLALKYVYALYWGLSTLSTVGYGLVHANNM-  319 (727)
T ss_pred             ---------------ccccccccccccC--cccccccch----------hHHHHHHHHHHHHhhHhhhccCCccCCCCc-
Confidence                           2222110000111  122567665          4456999999999999999  999999985 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHH
Q 005469          392 LEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECE  471 (695)
Q Consensus       392 ~E~i~~i~~mi~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~  471 (695)
                      .|++|+|++|++|.++||++||||+++++..+++..+|+.++.++++||+++++|++|++||++|++|+|+.++|+||++
T Consensus       320 ~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~  399 (727)
T KOG0498|consen  320 GEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEE  399 (727)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHHHHHHHHhhCCccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecC
Q 005469          472 MISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHN  551 (695)
Q Consensus       472 il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~  551 (695)
                      +|++||..||++|+.|+|.++++++|+|++++++++.+|+.++++..|+|||+|++|||++++||||.+|.+++...+.+
T Consensus       400 lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g  479 (727)
T KOG0498|consen  400 LLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGG  479 (727)
T ss_pred             HHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887655


Q ss_pred             CcEEEEEcCCCCeEecchhhhhccCCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchh
Q 005469          552 NIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPG  631 (695)
Q Consensus       552 g~~~i~~l~~G~~FGe~~l~~~l~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~  631 (695)
                      |..+...+++||+|||..+.+++.       .|+++||+|++.|+++.|++++|..++++||. ++.+++++.+++++++
T Consensus       480 ~~~~~~~L~~Gd~~GeEl~~~~~~-------~p~t~TVralt~~el~~L~~~dL~~V~~~f~~-~~~~~l~~~~r~~s~~  551 (727)
T KOG0498|consen  480 GFFVVAILGPGDFFGEELLTWCLD-------LPQTRTVRALTYCELFRLSADDLKEVLQQFRR-LGSKFLQHTFRYYSHL  551 (727)
T ss_pred             ceEEEEEecCCCccchHHHHHHhc-------CCCCceeehhhhhhHHhccHHHHHHHHHHhHH-HHHHHHHhHHHHhhhh
Confidence            666679999999999666667763       23589999999999999999999999999998 9999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhccc
Q 005469          632 WRTWAAVAIQLAWRRYKHRLTLTSL  656 (695)
Q Consensus       632 ~r~~~~~~~~~a~~~~~~r~~~~~l  656 (695)
                      ||.|++..+|.+|+++.+|+...++
T Consensus       552 ~r~~aa~~iq~a~r~~~~~~~~~~l  576 (727)
T KOG0498|consen  552 WRTWAACFIQAAWRRHIKRKGEEEL  576 (727)
T ss_pred             hhhhhhhhHHHHHHHHHHhhccchh
Confidence            9999999999999999988765543

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>COG4709 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query695
1wgp_A137 Solution Structure Of The Cnmp-Binding Domain From 8e-18
3ukn_A212 Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN 2e-11
1q3e_A207 Hcn2j 443-645 In The Presence Of Cgmp Length = 207 7e-10
3ffq_A202 Hcn2i 443-640 Apo-State Length = 202 9e-10
3otf_A220 Structural Basis For The Camp-Dependent Gating In H 1e-09
2q0a_A200 Structure And Rearrangements In The Carboxy-Termina 1e-09
4hbn_A205 Crystal Structure Of The Human Hcn4 Channel C-termi 1e-09
3bpz_A202 Hcn2-I 443-460 E502k In The Presence Of Camp Length 2e-09
3u10_A210 Tetramerization Dynamics Of The C-Terminus Underlie 2e-09
3u0z_A210 Tetramerization Dynamics Of The C-Terminus Underlie 5e-09
2ptm_A198 Structure And Rearrangements In The Carboxy-Termina 8e-09
3u11_A210 Tetramerization Dynamics Of The C-Terminus Underlie 3e-08
3etq_A204 X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 3e-08
1q43_A207 Hcn2i 443-640 In The Presence Of Camp, Selenomethio 7e-08
3beh_A355 Structure Of A Bacterial Cyclic Nucleotide Regulate 1e-05
1u12_A138 M. Loti Cyclic Nucleotide Binding Domain Mutant Len 2e-04
1vp6_A138 M.Loti Ion Channel Cylic Nucleotide Binding Domain 2e-04
2k0g_A142 Solution Structure Of A Bacterial Cyclic Nucleotide 2e-04
3co2_A140 Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domai 2e-04
3clp_A140 M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 L 2e-04
3cl1_A140 M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gm 2e-04
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 Back     alignment and structure 
Iteration: 1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 493 VRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILH 550
           VR+VPLF++MD+ +L+ IC+R+K  +FT+   + +EGDPV  MLF++RG L+S  +    
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 551 NNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXXAFGLEAEDVKYVTQ 610
           +   +  +L  G+F GDELL+W L                      AF L A+++K+V  
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 611 HFR 613
            FR
Sbjct: 128 QFR 130
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 Back     alignment and structure
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 Back     alignment and structure
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 Back     alignment and structure
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 Back     alignment and structure
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 Back     alignment and structure
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 Back     alignment and structure
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 Back     alignment and structure
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 Back     alignment and structure
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 Back     alignment and structure
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 Back     alignment and structure
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 Back     alignment and structure
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant Length = 138 Back     alignment and structure
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain Length = 138 Back     alignment and structure
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide- Activated K+ Channel Binding Domain In Complex With Camp Length = 142 Back     alignment and structure
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain Mutant Length = 140 Back     alignment and structure
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2 Length = 140 Back     alignment and structure
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query695
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 7e-61
3ukn_A212 Novel protein similar to vertebrate potassium VOL 9e-60
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 3e-53
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 5e-39
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 8e-34
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 2e-12
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 2e-11
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 2e-10
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 2e-10
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 4e-10
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 2e-08
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 6e-10
2pqq_A149 Putative transcriptional regulator; APC7345, strep 9e-10
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 3e-09
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 3e-09
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 5e-09
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 5e-09
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 6e-09
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 7e-09
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 3e-04
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 1e-08
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 1e-08
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 1e-08
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 6e-08
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 2e-08
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 2e-08
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 2e-08
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 3e-08
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 5e-08
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 6e-08
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 6e-08
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 1e-07
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 6e-08
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 1e-07
4din_B381 CAMP-dependent protein kinase type I-beta regulat 1e-07
4din_B381 CAMP-dependent protein kinase type I-beta regulat 4e-07
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 2e-07
1ft9_A222 Carbon monoxide oxidation system transcription reg 3e-07
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 1e-06
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 2e-06
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 5e-06
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 6e-06
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 2e-05
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 5e-04
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
 Score =  201 bits (514), Expect = 7e-61
 Identities = 43/206 (20%), Positives = 88/206 (42%), Gaps = 15/206 (7%)

Query: 421 ATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGL 480
           A  S  +  + K++ +E +M+ R+LP   R ++ +Y   R+   +  DE  +   + E +
Sbjct: 2   AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESI 60

Query: 481 RRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVR 540
           R+D+  + C DLV  VP F   D   +  +   ++  +F   + + +EG    RM F+ +
Sbjct: 61  RQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQ 120

Query: 541 GHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGL 600
           G +    I+ ++      L  G++ G+  L    RR          +++        F L
Sbjct: 121 GIV---DIIMSDGVIATSLSDGSYFGEICLLTRERR---------VASVKCETYCTLFSL 168

Query: 601 EAEDVKYVTQHFRYTFVKEKVKRSAR 626
             +    V   F    +++ ++  A 
Sbjct: 169 SVQHFNQVLDEFPA--MRKTMEEIAV 192
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query695
3ukn_A212 Novel protein similar to vertebrate potassium VOL 99.97
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 99.97
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.97
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 99.97
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.82
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.81
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.75
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.72
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.72
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.72
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 99.71
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 99.7
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.69
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.67
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 99.66
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 99.66
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.66
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 99.65
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 99.65
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 99.65
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 99.63
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 99.62
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.62
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 99.62
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.61
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 99.61
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 99.61
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 99.59
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 99.58
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 99.58
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 99.58
1ft9_A222 Carbon monoxide oxidation system transcription reg 99.58
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 99.58
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 99.57
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 99.55
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.53
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.53
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.5
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.49
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.49
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.48
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 99.48
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.47
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.45
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.45
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 99.45
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.44
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.43
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 99.41
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.38
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.36
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.36
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.31
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.29
3b02_A195 Transcriptional regulator, CRP family; structural 99.25
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.24
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.24
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 99.17
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.16
2q67_A114 Potassium channel protein; inverted teepee, helix 98.94
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 98.92
3rvy_A285 ION transport protein; tetrameric ION channel, vol 98.85
3ouf_A97 Potassium channel protein; ION channel, membrane, 98.81
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 98.74
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 98.62
1xl4_A301 Inward rectifier potassium channel; integral membr 98.44
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.42
3um7_A309 Potassium channel subfamily K member 4; potassium 98.32
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.21
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.03
3sya_A340 G protein-activated inward rectifier potassium CH; 98.0
3um7_A309 Potassium channel subfamily K member 4; potassium 97.9
3ukm_A280 Potassium channel subfamily K member 1; membrane p 97.87
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 97.76
3ukm_A280 Potassium channel subfamily K member 1; membrane p 97.75
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 97.63
1lnq_A336 MTHK channels, potassium channel related protein; 97.57
1ors_C132 Potassium channel; voltage-dependent, voltage sens 96.97
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 96.9
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
Probab=99.97  E-value=9.4e-32  Score=267.58  Aligned_cols=205  Identities=20%  Similarity=0.399  Sum_probs=175.7

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHhhcCChhhHHHHHHHHHHHHhhC
Q 005469          416 KVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQ  495 (695)
Q Consensus       416 ~~il~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~  495 (695)
                      ++|++++++++.+|+++|+.+++||+++++|++|+.||++||+|.|+.+++.+++++++.||++||.++..+++..++ +
T Consensus         1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~   79 (212)
T 3ukn_A            1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q   79 (212)
T ss_dssp             -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence            578899999999999999999999999999999999999999999998899999999999999999999999998877 8


Q ss_pred             CccccCCCHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecchhhhhcc
Q 005469          496 VPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLR  575 (695)
Q Consensus       496 i~~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~~l~~~l~  575 (695)
                      +|+|++++++++..|+..++++.|+|||+|+++|+.++.+|||.+|.|+++.   +| ..+..+++|++|||.+++.+. 
T Consensus        80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~-~~~~~l~~G~~fGe~~~~~~~-  154 (212)
T 3ukn_A           80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN-TVLAILGKGDLIGSDSLTKEQ-  154 (212)
T ss_dssp             SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS-CEEEEECTTCEEECSCCSSSS-
T ss_pred             cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC-eEEEEecCCCCcCcHHhccCC-
Confidence            9999999999999999999999999999999999999999999999999974   45 457999999999997653211 


Q ss_pred             CCcccCCCCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHHHHHHHHHHhhchhhh
Q 005469          576 RPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWR  633 (695)
Q Consensus       576 ~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~l~~~~r~~s~~~r  633 (695)
                            ..+++++++|.++|+++.|++++|.++++++|+ +....++.+.+.++...+
T Consensus       155 ------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~-~~~~~~~~l~~~l~~~lr  205 (212)
T 3ukn_A          155 ------VIKTNANVKALTYCDLQYISLKGLREVLRLYPE-YAQKFVSEIQHDLTYNLR  205 (212)
T ss_dssp             ------CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHH-HHHHHHHHHHHHEEEECB
T ss_pred             ------CCCcceEEEEcccEEEEEEeHHHHHHHHHHChH-HHHHHHHHHHHhhccccc
Confidence                  016889999999999999999999999999998 777677777666665554
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 695
d1wgpa_137 b.82.3.2 (A:) Probable cyclic nucleotide-gated ion 2e-18
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 1e-15
d1cx4a1136 b.82.3.2 (A:130-265) Regulatory subunit of Protein 3e-10
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 1e-08
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 2e-08
d1o7fa2155 b.82.3.2 (A:13-167) Regulatory domain of Epac2, do 5e-08
d1ne6a1136 b.82.3.2 (A:109-244) Regulatory subunit of Protein 2e-07
d1o7fa3124 b.82.3.2 (A:322-445) Regulatory domain of Epac2, d 4e-07
d1cx4a2147 b.82.3.2 (A:266-412) Regulatory subunit of Protein 4e-07
d2gaua2142 b.82.3.2 (A:10-151) Transcriptional regulator PG03 6e-04
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 80.0 bits (196), Expect = 2e-18
 Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 2/125 (1%)

Query: 491 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILH 550
             VR+VPLF++MD+ +L+ IC+R+K  +FT+   + +EGDPV  MLF++RG L+S     
Sbjct: 6   SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65

Query: 551 N--NIKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYV 608
                 +  +L  G+F GDELL+W L       LP S+ T+  L   EAF L A+++K+V
Sbjct: 66  GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125

Query: 609 TQHFR 613
              FR
Sbjct: 126 ASQFR 130
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query695
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.97
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.78
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.75
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.74
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.73
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.71
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.7
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.7
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.68
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.68
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.66
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.65
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.65
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.63
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.62
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.58
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 99.44
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.09
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 98.93
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 98.79
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.35
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 96.51
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 91.43
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 81.45
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1e-29  Score=246.89  Aligned_cols=181  Identities=23%  Similarity=0.394  Sum_probs=166.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHhhcCChhhHHHHHHHHHHHHhhCCccccCC
Q 005469          423 TSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHM  502 (695)
Q Consensus       423 ~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~l  502 (695)
                      |+.+.+|+++|+.+++||+.+++|++|+.||++||+|.|+ .++.+++++++.||+.|+.++..+++.++++++|+|+++
T Consensus         1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~   79 (193)
T d1q3ea_           1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA   79 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh-cccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence            4678999999999999999999999999999999999997 477899999999999999999999999999999999999


Q ss_pred             CHHHHHHHhhccEEEEecCCCEEecCCCccCeEEEEEEeeEEEEEEecCCcEEEEEcCCCCeEecchhhhhccCCcccCC
Q 005469          503 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERL  582 (695)
Q Consensus       503 s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~g~~~i~~l~~G~~FGe~~l~~~l~~~~~~~~  582 (695)
                      ++.++..|+..+++..|.||++|+++|+.++.+|||.+|.|+++.  .++.  ...+++|++||+.+++.+         
T Consensus        80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~--~~~~--~~~l~~G~~fGe~~~~~~---------  146 (193)
T d1q3ea_          80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNK--EMKLSDGSYFGEICLLTR---------  146 (193)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC---CCC--EEEECTTCEECHHHHHHC---------
T ss_pred             hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeec--CCcc--eeeeccceeeeeeeccCC---------
Confidence            999999999999999999999999999999999999999999864  2333  467999999999877543         


Q ss_pred             CCceeEEEEeeeceeeeeCHHHHHHHHHHcHHHHHH
Q 005469          583 PPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVK  618 (695)
Q Consensus       583 ~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~  618 (695)
                      .+++++++|.++|+++.|++++|.+++++||+ +..
T Consensus       147 ~~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~-~~~  181 (193)
T d1q3ea_         147 GRRTASVRADTYCRLYSLSVDNFNEVLEEYPM-MRR  181 (193)
T ss_dssp             SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGG-GHH
T ss_pred             CcccccceecCceEEEEEeHHHHHHHHHHCHH-HHH
Confidence            35889999999999999999999999999998 554
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure