Citrus Sinensis ID: 005508

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690---

MAESATELSESRVLPADSPPPQPNSTGVPVHNLTPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERQQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG

cccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHccccEEEEcccccHHHHcccHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHccccEEEEcccccccHHccccccccccccHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHHcccccEEccccccccccccccccHHHHHHHHHccccccEEEccccccHHHHHHHHHccccccEEEEccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccccccccHHHHHHHccccHHHHHHHHHHHccccccccccccccccccHHHHccc

******************************************IAPVKKQFLR*****************************************************EVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGS****RKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKV***K******************************************************************************************************SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKS*********

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MAESATELSESRVLPADSPPPQPNSTGVPVHNLTPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTxxxxxxxxxxxxxxxxxxxxxASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.	probable	Q7XT07
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.	probable	Q9T0J6
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.	probable	Q06053

Prediction of Enzyme Commission Number

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1VHN, chain A
Confidence level:very confident
Coverage over the Query: 340-538,550-610
View the alignment between query and template
View the model in PyMOL

Template: 3B0P, chain A
Confidence level:confident
Coverage over the Query: 370-613
View the alignment between query and template
View the model in PyMOL

Template: 1M9O, chain A
Confidence level:probable
Coverage over the Query: 103-133
View the alignment between query and template
View the model in PyMOL