Citrus Sinensis ID: 005508
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 693 | 2.2.26 [Sep-21-2011] | |||||||
| Q9T0J6 | 691 | tRNA-dihydrouridine(47) s | yes | no | 0.952 | 0.955 | 0.656 | 0.0 | |
| Q7XT07 | 685 | tRNA-dihydrouridine(47) s | yes | no | 0.930 | 0.941 | 0.653 | 0.0 | |
| Q3KRC5 | 640 | tRNA-dihydrouridine(47) s | yes | no | 0.818 | 0.885 | 0.431 | 1e-147 | |
| Q7ZWS1 | 640 | tRNA-dihydrouridine(47) s | N/A | no | 0.582 | 0.631 | 0.569 | 1e-135 | |
| Q28BT8 | 639 | tRNA-dihydrouridine(47) s | yes | no | 0.556 | 0.604 | 0.571 | 1e-134 | |
| Q96G46 | 650 | tRNA-dihydrouridine(47) s | yes | no | 0.542 | 0.578 | 0.584 | 1e-133 | |
| Q91XI1 | 637 | tRNA-dihydrouridine(47) s | yes | no | 0.509 | 0.554 | 0.612 | 1e-132 | |
| Q54CU9 | 671 | tRNA-dihydrouridine(47) s | yes | no | 0.525 | 0.542 | 0.548 | 1e-120 | |
| A8NZY7 | 676 | tRNA-dihydrouridine(47) s | N/A | no | 0.810 | 0.831 | 0.373 | 1e-116 | |
| P0CN28 | 725 | tRNA-dihydrouridine(47) s | yes | no | 0.748 | 0.715 | 0.388 | 1e-113 |
| >sp|Q9T0J6|DUS3L_ARATH tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Arabidopsis thaliana GN=At4g38890 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/692 (65%), Positives = 539/692 (77%), Gaps = 32/692 (4%)
Query: 16 ADSPPPQPNSTGVPVHNLTPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQH 75
A + P ++ V+ T EEL+ +++AP+KK+FL PPP + +VK + +
Sbjct: 18 AKAALPVQSTKQFSVYEATSEELIERSMAPIKKEFLCPPPP----SRSVKQNDAADVRAP 73
Query: 76 SSTLVKEKKSKRQLKRERQQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQK 135
S LV+EKKSKRQLKRER+++ S +LCP+VA++ DV SC YKDKCRF+HD++ FKAQK
Sbjct: 74 QSGLVQEKKSKRQLKRERREQ--STINLCPQVARTEDVDSCQYKDKCRFNHDIEAFKAQK 131
Query: 136 PDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLW 195
DD+EG+CPF++S C YGL+CRF G+HRD+ G+++ ++ SE+N NK+ Q+LLW
Sbjct: 132 ADDIEGQCPFVASGMKCAYGLSCRFLGSHRDIT---GNSDD-KEKSEMNFFNKETQRLLW 187
Query: 196 KNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVD 255
KNKM F ADAKLKSLGLLG AK + E + + NG + DS
Sbjct: 188 KNKMTFTNADAKLKSLGLLGHAK------KSNAAEEITAEKTQNGMNGTQATEVAVDSAV 241
Query: 256 ESECSPCVPEENNIVND------RPLKKAKSENVENCCSVEGDNGVSV----LEEDTRNN 305
SE + + ++ +I RP+KKAKSE+ +N S GD G LEE+T+ N
Sbjct: 242 SSEHTSEMIQDVDIPGPLETEEVRPMKKAKSEDQKN--SKTGDVGGVYDGVKLEEETKKN 299
Query: 306 TADTQPAAKIDD---ILPETDGSLKTHSREKK-LIDFREKLYLAPLTTVGNLPFRRVCKV 361
T A D+ + ETD SLK H REKK LIDFR+KLYLAPLTTVGNLPFRR+CKV
Sbjct: 300 GYPTSKANVEDEDSIKIVETDSSLKLHPREKKKLIDFRDKLYLAPLTTVGNLPFRRLCKV 359
Query: 362 LGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT 421
LGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG+YPDT++R VELID++CT
Sbjct: 360 LGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGSYPDTVSRVVELIDRECT 419
Query: 422 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNR 481
VDFIDINMGCPID+VVNK AGS LL KP+RMK I+E +S V+ PITIKVRT +FEGKNR
Sbjct: 420 VDFIDINMGCPIDMVVNKSAGSALLNKPLRMKNIVEVSSSIVETPITIKVRTAFFEGKNR 479
Query: 482 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD 541
IDSLIADIG WGA+AVT+HGR+RQQRYSK ADWDYIYQC + A+ +LQV+GNGD+YSYLD
Sbjct: 480 IDSLIADIGNWGATAVTIHGRSRQQRYSKSADWDYIYQCTKNATTNLQVIGNGDVYSYLD 539
Query: 542 WNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601
WNKHKSDCPEL+SCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDF RFGL+HWGS
Sbjct: 540 WNKHKSDCPELSSCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFVRFGLQHWGS 599
Query: 602 DKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADW 661
D KGVETTRHFLLEWLSYT RYIPVGLLDVIPQ++NWRPP+Y GRDDLETLM S+SA DW
Sbjct: 600 DTKGVETTRHFLLEWLSYTFRYIPVGLLDVIPQQINWRPPSYFGRDDLETLMMSESAGDW 659
Query: 662 IRISEMLLGKVPDGFTFAPKHKSNAYDRAENG 693
+RISEMLLGKVP+GFTFAPKHKSNAYDRAENG
Sbjct: 660 VRISEMLLGKVPEGFTFAPKHKSNAYDRAENG 691
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: - |
| >sp|Q7XT07|DUS3L_ORYSJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Oryza sativa subsp. japonica GN=Os04g0117600 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/667 (65%), Positives = 503/667 (75%), Gaps = 22/667 (3%)
Query: 36 EELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERQQ 95
EELVA+A+APVK FLRPP + D K +V EKKSKRQLKRER+Q
Sbjct: 32 EELVARAVAPVKPAFLRPPLSATPPKDEGKANG-------GGAVVAEKKSKRQLKRERKQ 84
Query: 96 EKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYG 155
E+KS+SHLC EV KSG+VSSC Y D CRFSHD+D + AQKP DLEG CPF + + CPYG
Sbjct: 85 EQKSSSHLCIEVGKSGNVSSCKYGDSCRFSHDIDAYLAQKPADLEGTCPFTNLDQLCPYG 144
Query: 156 LACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLG 215
L CRF GTH+D+ +G+ L + E+N LNKD+QKLLWKNK KFPKA A++K LGL
Sbjct: 145 LTCRFLGTHKDIHAASGN---LSEKHEINALNKDIQKLLWKNKYKFPKASAQIKLLGLKE 201
Query: 216 PAKSKMKVMEDKEQ------EGVVDSNNSHATN---GNGCMKGTGDSVDESECSPCVPEE 266
KSK D ++ +G D N N C + +D SE P +
Sbjct: 202 VIKSKPDAANDDKKVNHDNLDGNDDENKEPLCNPPVNAECDSTLCEELDRSEGEPLIDNS 261
Query: 267 NNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSL 326
V RP KK+K E+ E G + ED N + +P+ TD
Sbjct: 262 IPCVEPRPTKKSKVESDEIDKHGAGTLNTNTESEDP-NLSNGLEPSNNSSSC--RTDLIT 318
Query: 327 KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA 386
H REKK+IDFREKLYLAPLTTVGNLPFRR+CK LGAD+TCGEMAMCTNLLQGQASEWA
Sbjct: 319 TPHLREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQASEWA 378
Query: 387 LLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLL 446
LLRRHSSEDLFGVQICGAYPDT+ARTVEL+D +C+VDFIDINMGCPIDIVVNKGAGS LL
Sbjct: 379 LLRRHSSEDLFGVQICGAYPDTVARTVELVDNECSVDFIDINMGCPIDIVVNKGAGSSLL 438
Query: 447 TKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQ 506
TKPMR+K I++A S +KP+T+KVRT +FEG+NR DS+++DI WGASA+TVHGR+RQQ
Sbjct: 439 TKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIVSDIYDWGASAITVHGRSRQQ 498
Query: 507 RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566
RYSKLADWDYIYQCA+KA D L V+GNGD++S+ DWNKH S C ++++ MIARGALIKPW
Sbjct: 499 RYSKLADWDYIYQCAQKAPDQLHVVGNGDVFSFTDWNKHVSGCSKISTSMIARGALIKPW 558
Query: 567 IFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPV 626
IFTE+KEQRHWDITSGER NI+KDF FGLEHWGSD KGVETTR+FLLEWLSYTCRYIPV
Sbjct: 559 IFTEVKEQRHWDITSGERFNILKDFVSFGLEHWGSDSKGVETTRYFLLEWLSYTCRYIPV 618
Query: 627 GLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNA 686
GLLDVIPQRLNWRPP+Y GRDDLETLM SDSAADWIRISEMLLGKVP+GFTF PKHKSNA
Sbjct: 619 GLLDVIPQRLNWRPPSYCGRDDLETLMISDSAADWIRISEMLLGKVPEGFTFTPKHKSNA 678
Query: 687 YDRAENG 693
YDRAENG
Sbjct: 679 YDRAENG 685
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q3KRC5|DUS3L_RAT tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus3l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 521 bits (1342), Expect = e-147, Method: Compositional matrix adjust.
Identities = 280/649 (43%), Positives = 375/649 (57%), Gaps = 82/649 (12%)
Query: 55 PTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERQQEKKSASH----------LC 104
PT K Q++ T V + +RQ+ + + + KS H LC
Sbjct: 57 PTEGPAEPEAKRIRLEDGQENGKTEVAVESHERQVPKRARGQNKSRPHMKPAHYDKERLC 116
Query: 105 PEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTH 164
P + + + C + D+CRF HD+ + KP DL C ++ G CPY + CRF+G H
Sbjct: 117 PSLLQE-SATPCAFGDRCRFLHDVGRYLETKPADLGPHCVLFNTFGRCPYSMTCRFAGAH 175
Query: 165 -----RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKS 219
+++V + S NGL++ +Q+ L K ++ F +A+ L
Sbjct: 176 LGPEGQNLVQEEVVARCAQLPSVRNGLDRALQQQLRKRQVCFERAEQAL----------- 224
Query: 220 KMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAK 279
SH T G P + E+ + P +
Sbjct: 225 ------------------SHLTQGP---------------MPTIAPESTVATLTPKHSS- 250
Query: 280 SENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSL-KTHSREKKLIDF 338
C V+ DN V + R + + P TD + + EKK +D
Sbjct: 251 -------CHVQLDN---VGGDGARQGSP-------VPTCGPLTDEDVVRLRPCEKKRLDI 293
Query: 339 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFG 398
KLYLAPLTT GNLPFRR+CK GADVTCGEMAMCTNLLQGQ SEWALL+RH ED+FG
Sbjct: 294 SGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTNLLQGQMSEWALLKRHPCEDIFG 353
Query: 399 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 458
VQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V KG G L+ + + + I+
Sbjct: 354 VQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVRG 413
Query: 459 TSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIY 518
+ +D P+T+K+RTG E + L+ ++ WG + VT+HGR+R+QRY++LADW YI
Sbjct: 414 MNEVLDVPLTVKMRTGVQERVSLAHRLLPELRNWGVALVTLHGRSREQRYTRLADWPYIE 473
Query: 519 QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWD 578
QCA+ AS + + GNGDI S+ D N +A M+ARGAL+KPW+FTEIKEQRHWD
Sbjct: 474 QCAKVAS-PMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEIKEQRHWD 530
Query: 579 ITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNW 638
I+S ERL+I++DF +GLEHWGSD +GVE TR FLLEWLS+ CRY+PVGLL+ +PQR+N
Sbjct: 531 ISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLSFLCRYVPVGLLERLPQRINE 590
Query: 639 RPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
RPP Y GRD LETLMAS AADWIRISEMLLG VP GF F PKHK+NAY
Sbjct: 591 RPPYYLGRDYLETLMASQQAADWIRISEMLLGPVPPGFVFLPKHKANAY 639
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q7ZWS1|DUS3L_XENLA tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis GN=dus3l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/413 (56%), Positives = 298/413 (72%), Gaps = 9/413 (2%)
Query: 279 KSENVENCCSVEGDNGVS---VLEEDTRNNTADTQPAAKIDDILPETDGS-LKTHSREKK 334
KS+ C GD+ V++ED+ TQ + I + TD +K EKK
Sbjct: 232 KSDKYLKLCFKSGDSSKMKNPVVKEDSAVQV--TQKDSPITTVGAVTDEDVIKLRPCEKK 289
Query: 335 LIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE 394
IDFR KLYLAPLTT GNLPFRR+CK LGAD+TCGEMAMCTNLLQGQ SEWALL+RH SE
Sbjct: 290 TIDFRNKLYLAPLTTCGNLPFRRICKRLGADITCGEMAMCTNLLQGQPSEWALLKRHHSE 349
Query: 395 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKG 454
D+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V KG G L+ + + +
Sbjct: 350 DIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFEQ 409
Query: 455 IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW 514
I++ + +D P+T+K+RTG E N LI ++ WG S VT+HGR+R+QRY+KLA+W
Sbjct: 410 IVKGMNSVLDVPLTVKIRTGVQEKVNIAHKLIPNLRDWGVSLVTLHGRSREQRYTKLANW 469
Query: 515 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 574
+YI QCA+ AS + + GNGDI SY D N+ +A M+ARGAL KPW+FTEIKEQ
Sbjct: 470 EYIDQCAKIAS-PVPLFGNGDIISYEDANRALQ--TGVAGVMLARGALFKPWLFTEIKEQ 526
Query: 575 RHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQ 634
RHWDI+S ER +I+KDF +GLEHWGSD +GVE TR F+LEWLS+ CRYIPVGLL+ +PQ
Sbjct: 527 RHWDISSTERFDILKDFTNYGLEHWGSDCQGVEKTRKFMLEWLSFLCRYIPVGLLEHVPQ 586
Query: 635 RLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
++N RPP Y GRD LETLMAS + DWI+ISEMLLG VP FTF PKHK+N+Y
Sbjct: 587 KINERPPYYMGRDYLETLMASQNVTDWIKISEMLLGPVPPNFTFLPKHKANSY 639
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q28BT8|DUS3L_XENTR tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus tropicalis GN=dus3l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 481 bits (1237), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/399 (57%), Positives = 292/399 (73%), Gaps = 13/399 (3%)
Query: 289 VEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLT 348
V+ DN V+++D+ T A D+ L +K EKK IDFR KLYLAPLT
Sbjct: 253 VKEDNAAQVVQKDSPVTTV----GAVTDEDL------VKLRPCEKKTIDFRNKLYLAPLT 302
Query: 349 TVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDT 408
T GNLPFRR+CK GAD+TCGEMAMCTNLLQGQ SEWALL+RH SED+FGVQ+ GA+PDT
Sbjct: 303 TCGNLPFRRLCKRFGADITCGEMAMCTNLLQGQPSEWALLKRHHSEDIFGVQLEGAFPDT 362
Query: 409 LARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT 468
+ + EL+++ VDF+DIN+GCPID+V KG G L+ + + + I++ + +D P+T
Sbjct: 363 MTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFEQIVKGMNSVLDVPLT 422
Query: 469 IKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL 528
+K+RTG E N LI ++ WG S VT+HGR+R+QRY+KLADW+YI QCA AS L
Sbjct: 423 VKIRTGVQEKINIAHKLIPNLRDWGVSLVTLHGRSREQRYTKLADWEYIAQCADIAS-PL 481
Query: 529 QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIM 588
+ GNGDI SY D N+ ++ M+ARGAL+KPW+FTEIKEQRHWDI+S ER +I+
Sbjct: 482 PLFGNGDIISYEDANRALQ--TGVSGIMLARGALLKPWLFTEIKEQRHWDISSTERFDIL 539
Query: 589 KDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDD 648
KDF +GLEHWGSD +GVE TR F+LEWLS+ CRYIP+GLL+ +PQ++N RPP Y GRD
Sbjct: 540 KDFTNYGLEHWGSDCQGVEKTRRFMLEWLSFLCRYIPIGLLEHVPQKINERPPYYMGRDY 599
Query: 649 LETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
+ETLMAS + DWI+ISEMLLG VP F+F PKHK+N+Y
Sbjct: 600 METLMASQNVTDWIKISEMLLGPVPPNFSFLPKHKANSY 638
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Xenopus tropicalis (taxid: 8364) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q96G46|DUS3L_HUMAN tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS3L PE=1 SV=2 | Back alignment and function description |
|---|
Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/380 (58%), Positives = 280/380 (73%), Gaps = 4/380 (1%)
Query: 309 TQPAAKIDDILPETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVT 367
T P++ + P TD + + EKK +D R KLYLAPLTT GNLPFRR+CK GADVT
Sbjct: 273 TPPSSPVRTCGPLTDEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVT 332
Query: 368 CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDI 427
CGEMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+ + VDF+DI
Sbjct: 333 CGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDI 392
Query: 428 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIA 487
N+GCPID+V KG G L+ + + + I+ + +D P+T+K+RTG E N L+
Sbjct: 393 NVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLP 452
Query: 488 DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 547
++ WG + VT+HGR+R+QRY+KLADW YI +C + AS + + GNGDI S+ D N+
Sbjct: 453 ELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQAAS-PMPLFGNGDILSFEDANRAMQ 511
Query: 548 DCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVE 607
+ MIARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE
Sbjct: 512 T--GVTGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVE 569
Query: 608 TTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEM 667
TR FLLEWLS+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEM
Sbjct: 570 KTRRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEM 629
Query: 668 LLGKVPDGFTFAPKHKSNAY 687
LLG VP F F PKHK+NAY
Sbjct: 630 LLGPVPPSFAFLPKHKANAY 649
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q91XI1|DUS3L_MOUSE tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus3l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust.
Identities = 218/356 (61%), Positives = 272/356 (76%), Gaps = 3/356 (0%)
Query: 332 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 391
EKK +D KLYLAPLTT GNLPFRR+CK GADVTCGEMA+CTNLLQGQ SEWALL+RH
Sbjct: 284 EKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRH 343
Query: 392 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMR 451
ED+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V KG G L+ + +
Sbjct: 344 PCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAK 403
Query: 452 MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL 511
+ I+ +G +D P+T+K+RTG E + L+ ++ WG + VT+HGR+R+QRY++L
Sbjct: 404 FQQIVRGVNGVLDVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQRYTRL 463
Query: 512 ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 571
ADW YI QCA+ AS + + GNGDI S+ D N +A M+ARGAL+KPW+FTEI
Sbjct: 464 ADWPYIEQCAKVAS-PMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEI 520
Query: 572 KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDV 631
KEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE TR FLLEWLS+ CRY+PVGLL+
Sbjct: 521 KEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLSFLCRYVPVGLLER 580
Query: 632 IPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
PQR+N RPP Y GRD LETLMAS AADWIRISEMLLG VP GF F PKHK+NAY
Sbjct: 581 PPQRINERPPYYLGRDYLETLMASQQAADWIRISEMLLGPVPPGFVFLPKHKANAY 636
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium discoideum GN=dus3l PE=3 SV=1 | Back alignment and function description |
|---|
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/368 (54%), Positives = 264/368 (71%), Gaps = 4/368 (1%)
Query: 321 ETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG 380
E D + EKK I+F +L LAPLTTVGNLPFRR+CK LGAD+T GEMA+ T LL+G
Sbjct: 305 EIDIMTPLKANEKKRINFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEG 364
Query: 381 QASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 440
SE ALL+RH ED FGVQICG+Y D + E I+ + DF+DIN GCPID+V N G
Sbjct: 365 TKSELALLKRHPCEDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMG 424
Query: 441 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 500
AG+ L+ +P +++ ++ S ++ P TIK+R G E LI +G WGA AVT+H
Sbjct: 425 AGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLH 484
Query: 501 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560
GR+R QRYS+LA+WDY+ QC+ +S + ++GNGDIY+Y D + D +++S MIARG
Sbjct: 485 GRSRAQRYSRLANWDYVKQCSEVSS--IPLIGNGDIYNYQDV-VNIYDSSKVSSIMIARG 541
Query: 561 ALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYT 620
ALIKPWIFTEIKE+R WDI++ ERL+ ++DFA +GL+HWGSD+ GV+ TR FLL WLS++
Sbjct: 542 ALIKPWIFTEIKEKREWDISASERLDFIRDFANYGLDHWGSDRIGVDNTRKFLLNWLSFS 601
Query: 621 CRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAP 680
RYIPVGLLD + +N RPPAY GR DLETL+AS DWI+I+EM LG V ++F P
Sbjct: 602 HRYIPVGLLDKV-HYMNERPPAYFGRSDLETLLASTQVKDWIKITEMFLGPVTSDYSFVP 660
Query: 681 KHKSNAYD 688
KH SN+Y+
Sbjct: 661 KHNSNSYE 668
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|A8NZY7|DUS3_COPC7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=DUS3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 256/686 (37%), Positives = 345/686 (50%), Gaps = 124/686 (18%)
Query: 71 SSQQHSSTLVKEKKSKRQL--KRERQQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDL 128
+ Q L K +K RQ K R + + LC +VA + C + CRF+HD+
Sbjct: 49 NGQPSRRALAKAQKKARQGANKGRRFGKVRDEVELCWKVANG---AICDFGTSCRFTHDI 105
Query: 129 DGFKAQKPDDLE---------------------------------GECPFLSSEGPCPYG 155
+ +KP DL +CP G C YG
Sbjct: 106 AEYIKEKPQDLRIPLLSEFKESPPYGPDLTVIGKPGKKHPNIDFSTKCPVHEESGECRYG 165
Query: 156 LACRFSGTH---------RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADA 206
CR+ G H V D S E+N + DVQK L K P A A
Sbjct: 166 YKCRYMGGHALEDEEGNVTLVADEDKKAQVALTSHEINFVGGDVQKQLRSKKYPTPIASA 225
Query: 207 KLKSLGLLGPAKSKMKVMEDKEQ--EGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVP 264
L+ L K M D+ Q + VV T+
Sbjct: 226 YLEEL----------KSMNDEAQKPQAVVSETTVMETD---------------------- 253
Query: 265 EENNIVNDRPLKKAKSENVENCCSVEGDNGV--SVLEEDTRNNTADTQPAAKIDDILPET 322
+A+ + + S NG + EE Q D+
Sbjct: 254 ------------EAQPSSTDAVASEATQNGTEPAPAEEVISKRVGGVQSGKDEPDV---- 297
Query: 323 DGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQA 382
EK+ +D++ K YLAPLTTVGNLPFRR+C LGAD+TCGEM + T+ L G
Sbjct: 298 ----PMRFSEKRRLDWKGKTYLAPLTTVGNLPFRRMCVKLGADITCGEMGLATSFLAGSK 353
Query: 383 SEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQ--CTVDFIDINMGCPIDIVVNKG 440
EW+L+RRH SE +FG+Q+ G P TL T E+I ++ VDF+D+N GCPID+V G
Sbjct: 354 EEWSLVRRHPSEKIFGIQVAGNKPHTLVPTAEVIAKEFPTGVDFVDLNCGCPIDLVFKAG 413
Query: 441 AGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLIADIGT-WGASAVT 498
+GS LL ++ II+ + + + P+T+K+RTG EG+N L+ I W ASA+T
Sbjct: 414 SGSALLDNAGKLGKIIQGMNRALGEIPLTVKIRTGVKEGRNNAHKLMPRISAEWSASAIT 473
Query: 499 VHGRTRQQRYSKLADWDYIYQC-----ARKASDDLQ---VLGNGDIYSYLDW----NKHK 546
+HGRTRQQRY+KLADWDYI +C AR+A +DL + G GD +S D+ N +
Sbjct: 474 LHGRTRQQRYTKLADWDYIKECVAAVRAREADEDLPPVPIFGGGDCFSSQDYWEKINNYG 533
Query: 547 SDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGV 606
D MI RGALIKPWIFTEIKE+R WDI++ ERL +++D+ +GL H+GSD GV
Sbjct: 534 VD-----GVMIGRGALIKPWIFTEIKERREWDISATERLQLIRDYVEYGLNHFGSDTAGV 588
Query: 607 ETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISE 666
TTR +L E LS+ RY+P+GLL+ +P ++N R PA+ GR DLETL+AS + DW++ISE
Sbjct: 589 NTTRRYLCEALSFQYRYVPIGLLERLPAKINERAPAFVGRSDLETLLASPDSQDWVKISE 648
Query: 667 MLLGKVPDGFTFAPKHKSNAYDRAEN 692
M LG P + F PKHKSNAY E
Sbjct: 649 MFLGPAPQSWVFTPKHKSNAYGSEEG 674
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs. Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (taxid: 240176) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 9 |
| >sp|P0CN28|DUS3_CRYNJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DUS3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust.
Identities = 252/648 (38%), Positives = 333/648 (51%), Gaps = 129/648 (19%)
Query: 119 KDKCRFSHDLDGFKAQKPDDL----------------EGE------------------CP 144
K CR++H +G+ KP+D+ EGE CP
Sbjct: 121 KGDCRYAHSWEGYFEVKPNDISYRPDWSLVGEAPFVVEGERVVGGEDVVGKTLDLDTVCP 180
Query: 145 FLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLR-------------------------- 178
L G CP+G CRF G H V VA + + +
Sbjct: 181 VLKDLGYCPFGWRCRFLGAH--VKRVAAAVDGEKEKEAGPEKRMGEWQVENWVQSEVENG 238
Query: 179 -KSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPA----KSKMKVMEDKEQEGVV 233
K E N +V L ++ FP ++A LK + P K K K + V+
Sbjct: 239 WKQKETNWPEHEVLNALRRSTASFPFSEAYLKKVDPDKPFTLQNKKPTKQQPHKRKNNVL 298
Query: 234 DSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDN 293
D A NG + GD +E N +N +EN
Sbjct: 299 DE--EEAANGPTGIPSAGD------------DEENAMN-------ATEN----------- 326
Query: 294 GVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNL 353
E + +P A + PE EK+ +++ YLAPLTTVGNL
Sbjct: 327 -----ERNEEKGKVYGEPEAIDVPLRPE----------EKRRLNWEGGRYLAPLTTVGNL 371
Query: 354 PFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTV 413
PFRR+C GA +T EMA+ L+ G EWAL+RRH SE +FGVQ+ G +P+ +
Sbjct: 372 PFRRLCVDYGATITVSEMALAQPLVYGAKEEWALVRRHESEKMFGVQVAGGFPNRMVPAA 431
Query: 414 ELIDQQCT----VDFIDINMGCPIDIVVNKGAGSCLLTKPMRM-KGIIEATSGTVDKPIT 468
E+I VDF+D+NMGCPID+V N+GAGS L+ P R+ K ++ D P+T
Sbjct: 432 EVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGRLGKLLVGMNRALGDIPLT 491
Query: 469 IKVRTGYFEGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYIYQCA---RKA 524
+K RTG GK LI T WGA A+T+HGR+RQQRYSK ADW+YI C R++
Sbjct: 492 VKFRTGVAHGKPNAHKLIPRFVTEWGAGALTIHGRSRQQRYSKPADWEYIKTCVTALRES 551
Query: 525 SDD-----LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDI 579
D + + GNGD +S + + + D + M+ARGALIKPWIFTEIKE+R WDI
Sbjct: 552 VADANLPPVPIFGNGDCFSAASYYE-EMDRSGVDGVMVARGALIKPWIFTEIKERREWDI 610
Query: 580 TSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWR 639
++ ERL +K FA FGL HWGSD +GV TTR FL E LS+ RYIP+GLL+ +P +LN R
Sbjct: 611 SAVERLEGIKKFAEFGLSHWGSDTQGVNTTRRFLCEALSFQHRYIPIGLLERLPAKLNER 670
Query: 640 PPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
PPAY GR++LETL+AS A DW++ISEM LGKV +GF+F PKHKSNAY
Sbjct: 671 PPAYRGRNELETLLASPFAGDWVKISEMFLGKVDEGFSFVPKHKSNAY 718
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 9 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 693 | ||||||
| UNIPROTKB|F1SBU5 | 652 | LOC100513458 "Uncharacterized | 0.539 | 0.573 | 0.589 | 4.9e-142 | |
| UNIPROTKB|Q96G46 | 650 | DUS3L "tRNA-dihydrouridine(47) | 0.542 | 0.578 | 0.584 | 2.1e-141 | |
| UNIPROTKB|F1NGP4 | 630 | DUS3L "Uncharacterized protein | 0.523 | 0.576 | 0.602 | 2.7e-141 | |
| UNIPROTKB|E1BGZ1 | 650 | DUS3L "Uncharacterized protein | 0.539 | 0.575 | 0.587 | 3.4e-141 | |
| UNIPROTKB|F1PS34 | 645 | LOC100856098 "Uncharacterized | 0.526 | 0.565 | 0.607 | 1.9e-140 | |
| RGD|1563228 | 640 | Dus3l "dihydrouridine synthase | 0.526 | 0.570 | 0.598 | 6.3e-140 | |
| ZFIN|ZDB-GENE-040426-1260 | 660 | dus3l "dihydrouridine synthase | 0.855 | 0.898 | 0.468 | 8e-140 | |
| MGI|MGI:2147092 | 637 | Dus3l "dihydrouridine synthase | 0.545 | 0.593 | 0.583 | 2.7e-139 | |
| FB|FBgn0032819 | 604 | CG10463 [Drosophila melanogast | 0.551 | 0.632 | 0.510 | 2.4e-123 | |
| DICTYBASE|DDB_G0292686 | 671 | dus3l "tRNA-dihydrouridine syn | 0.922 | 0.952 | 0.396 | 2.5e-120 |
| UNIPROTKB|F1SBU5 LOC100513458 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1197 (426.4 bits), Expect = 4.9e-142, Sum P(2) = 4.9e-142
Identities = 223/378 (58%), Positives = 279/378 (73%)
Query: 311 PAAKIDDILPETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCG 369
P+ + P TD + + EK+ +D KLYLAPLTT GNLPFRR+CK GADVTCG
Sbjct: 277 PSGPLRTCGPLTDEDVVRLRPCEKRRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCG 336
Query: 370 EMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINM 429
EMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+
Sbjct: 337 EMAVCTNLLQGQTSEWALLKRHPCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINV 396
Query: 430 GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 489
GCPID+V KG G L+ + + + I+ + +D P+T+K+RTG E N L+ ++
Sbjct: 397 GCPIDLVYKKGGGCALMNRSAKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPEL 456
Query: 490 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 549
WGA+ VT+HGR+R+QRY+KLADW YI QC AS + + GNGDI SY D N+
Sbjct: 457 RDWGAALVTLHGRSREQRYTKLADWQYIEQCVTAASP-MPLFGNGDILSYEDANRAMKT- 514
Query: 550 PELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETT 609
+A MIARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE T
Sbjct: 515 -GVAGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVEKT 573
Query: 610 RHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLL 669
R FLLEWLS+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEMLL
Sbjct: 574 RRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYMGRDYLETLMASQKAADWIRISEMLL 633
Query: 670 GKVPDGFTFAPKHKSNAY 687
G VP F F PKHK+NAY
Sbjct: 634 GPVPPTFVFLPKHKANAY 651
|
|
| UNIPROTKB|Q96G46 DUS3L "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 2.1e-141, Sum P(2) = 2.1e-141
Identities = 222/380 (58%), Positives = 280/380 (73%)
Query: 309 TQPAAKIDDILPETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVT 367
T P++ + P TD + + EKK +D R KLYLAPLTT GNLPFRR+CK GADVT
Sbjct: 273 TPPSSPVRTCGPLTDEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVT 332
Query: 368 CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDI 427
CGEMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+ + VDF+DI
Sbjct: 333 CGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDI 392
Query: 428 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIA 487
N+GCPID+V KG G L+ + + + I+ + +D P+T+K+RTG E N L+
Sbjct: 393 NVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLP 452
Query: 488 DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 547
++ WG + VT+HGR+R+QRY+KLADW YI +C + AS + + GNGDI S+ D N+
Sbjct: 453 ELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQAASP-MPLFGNGDILSFEDANRAMQ 511
Query: 548 DCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVE 607
+ MIARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE
Sbjct: 512 T--GVTGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVE 569
Query: 608 TTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEM 667
TR FLLEWLS+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEM
Sbjct: 570 KTRRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEM 629
Query: 668 LLGKVPDGFTFAPKHKSNAY 687
LLG VP F F PKHK+NAY
Sbjct: 630 LLGPVPPSFAFLPKHKANAY 649
|
|
| UNIPROTKB|F1NGP4 DUS3L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 2.7e-141, Sum P(2) = 2.7e-141
Identities = 221/367 (60%), Positives = 281/367 (76%)
Query: 322 TDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG 380
TD + K S EKK ++ + KLYLAPLTT GNLPFRR+CK GADVTCGEMA+CTNLLQG
Sbjct: 266 TDEDIVKLRSCEKKKLEIQGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQG 325
Query: 381 QASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 440
Q+SEWALL+RH +ED+FGVQ+ GA+PDT+ + EL++Q VDF+DIN+GCPID+V KG
Sbjct: 326 QSSEWALLKRHHTEDIFGVQLEGAFPDTMTKCAELLNQTIDVDFVDINVGCPIDLVYKKG 385
Query: 441 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 500
G L+T+ + + I+ + +D P+T+K+RTG E N +I I WGAS VT+H
Sbjct: 386 GGCALMTRSNKFEQIVRGMNSVLDVPLTVKIRTGVQEKMNVAHKIIPKIREWGASMVTLH 445
Query: 501 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560
GR+R+QRY+++ADWDYI +CA+ AS + + GNGDI SY D N+ ++ MIARG
Sbjct: 446 GRSREQRYTRVADWDYIAECAKIASP-MPLFGNGDILSYEDANQAMQT--GVSGIMIARG 502
Query: 561 ALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYT 620
ALIKPW+FTEIKEQRHWDI+S ER +I++DF +GLEHWGSD +GVE TR FLLEWLS+
Sbjct: 503 ALIKPWLFTEIKEQRHWDISSSERFDILRDFTNYGLEHWGSDTQGVEKTRKFLLEWLSFL 562
Query: 621 CRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAP 680
CRYIPVGLL+ +PQ++N RPP Y GRD LETLMAS + DWI+ISE+LLG VP FTF P
Sbjct: 563 CRYIPVGLLEHLPQKINERPPYYIGRDYLETLMASQNVDDWIKISELLLGPVPTNFTFLP 622
Query: 681 KHKSNAY 687
KHK+N+Y
Sbjct: 623 KHKANSY 629
|
|
| UNIPROTKB|E1BGZ1 DUS3L "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1196 (426.1 bits), Expect = 3.4e-141, Sum P(2) = 3.4e-141
Identities = 222/378 (58%), Positives = 279/378 (73%)
Query: 311 PAAKIDDILPETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCG 369
P+ + P TD + + EK+ +D KLYLAPLTT GNLPFRR+CK GADVTCG
Sbjct: 275 PSGPLRTCGPLTDEDVVRLRPHEKRRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCG 334
Query: 370 EMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINM 429
EMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+
Sbjct: 335 EMAVCTNLLQGQTSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINV 394
Query: 430 GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 489
GCPID+V KG G L+ + + + I+ + +D P+T+K+RTG E N L+ D+
Sbjct: 395 GCPIDLVFKKGGGCALMNRLAKFQQIVRGMNQVLDVPLTVKLRTGVQERVNLAHRLLPDL 454
Query: 490 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 549
WGA+ VT+HGR+R+QRY+KLADW YI QC A+ + + GNGD+ SY D N+
Sbjct: 455 RDWGAALVTLHGRSREQRYTKLADWQYIEQCVA-AARPMPLFGNGDVLSYEDANRALQT- 512
Query: 550 PELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETT 609
+A MIARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE T
Sbjct: 513 -GVAGVMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVEKT 571
Query: 610 RHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLL 669
R FLLEWLS+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEMLL
Sbjct: 572 RRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLL 631
Query: 670 GKVPDGFTFAPKHKSNAY 687
G VP F F PKHK+NAY
Sbjct: 632 GPVPPNFVFLPKHKANAY 649
|
|
| UNIPROTKB|F1PS34 LOC100856098 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1201 (427.8 bits), Expect = 1.9e-140, Sum P(2) = 1.9e-140
Identities = 224/369 (60%), Positives = 276/369 (74%)
Query: 320 PETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL 378
P TD + + EK+ +D KLYLAPLTT GNLPFRR+CK GADVTCGEMA+CTNLL
Sbjct: 279 PLTDEDIVRLRPCEKRKLDIGGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLL 338
Query: 379 QGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN 438
QGQ SEWALLRRH ED+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V
Sbjct: 339 QGQTSEWALLRRHPCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINVGCPIDLVYK 398
Query: 439 KGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT 498
KG G L+ + + + I+ + +D P+T+K+RTG E N L+ ++ WGA+ VT
Sbjct: 399 KGGGCALMNRSAKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELREWGAALVT 458
Query: 499 VHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558
+HGR+R+QRY+KLADW YI QC AS + + GNGDI SY D N+ +A MIA
Sbjct: 459 LHGRSREQRYTKLADWQYIEQCVTAASP-MPLFGNGDILSYEDANRAMQT--GVAGVMIA 515
Query: 559 RGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLS 618
RGAL+KPW+FTEIKEQRHWDI+S ERL I++DF R+GLEHWGSD +GVE TR FLLEWLS
Sbjct: 516 RGALLKPWLFTEIKEQRHWDISSSERLAILQDFTRYGLEHWGSDTQGVEKTRRFLLEWLS 575
Query: 619 YTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTF 678
+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEMLLG VP F F
Sbjct: 576 FLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPNFVF 635
Query: 679 APKHKSNAY 687
PKHK+NAY
Sbjct: 636 LPKHKANAY 644
|
|
| RGD|1563228 Dus3l "dihydrouridine synthase 3-like (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1192 (424.7 bits), Expect = 6.3e-140, Sum P(2) = 6.3e-140
Identities = 221/369 (59%), Positives = 277/369 (75%)
Query: 320 PETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL 378
P TD + + EKK +D KLYLAPLTT GNLPFRR+CK GADVTCGEMAMCTNLL
Sbjct: 274 PLTDEDVVRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTNLL 333
Query: 379 QGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN 438
QGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V
Sbjct: 334 QGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYK 393
Query: 439 KGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT 498
KG G L+ + + + I+ + +D P+T+K+RTG E + L+ ++ WG + VT
Sbjct: 394 KGGGCALMNRSAKFQQIVRGMNEVLDVPLTVKMRTGVQERVSLAHRLLPELRNWGVALVT 453
Query: 499 VHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558
+HGR+R+QRY++LADW YI QCA+ AS + + GNGDI S+ D N +A M+A
Sbjct: 454 LHGRSREQRYTRLADWPYIEQCAKVASP-MPLFGNGDILSFEDANCAMQT--GVAGIMVA 510
Query: 559 RGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLS 618
RGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE TR FLLEWLS
Sbjct: 511 RGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLS 570
Query: 619 YTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTF 678
+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEMLLG VP GF F
Sbjct: 571 FLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQQAADWIRISEMLLGPVPPGFVF 630
Query: 679 APKHKSNAY 687
PKHK+NAY
Sbjct: 631 LPKHKANAY 639
|
|
| ZFIN|ZDB-GENE-040426-1260 dus3l "dihydrouridine synthase 3-like (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
Identities = 293/626 (46%), Positives = 380/626 (60%)
Query: 69 ERSSQQHSSTLVKEKKSKRQLKRERQQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDL 128
E + Q+ ++ + R + E K LC + + D S CPY +KCRF HD+
Sbjct: 60 ETAEQEKKKIKMRGQNKSRPHVKPHTYEDK---RLCTSIIQERD-SVCPYGEKCRFLHDV 115
Query: 129 DGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNT--LRKSSEVNGL 186
+ + K DL +C ++ G CPYGL CR++ H D+ NT R S+
Sbjct: 116 SEYLSTKAADLGDQCHLFNTLGKCPYGLTCRYAKAHTSA-DLKNMVNTELYRASAGRENT 174
Query: 187 NKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGV-VDSNNSHATNGNG 245
+ K L K K + + L +++ +EQ G D H
Sbjct: 175 TNLLDKELQKRLRKKQQRFPGADAF-LKSISRAPRPEHNSREQRGKHEDQRQKHEEQR-- 231
Query: 246 CMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCC-SVE--GDNGVSVLEEDT 302
+ DE S ++ N R +S+N E+ SVE NG D+
Sbjct: 232 ------EQTDEQ--SKNTEDQTQTNNQRENANIQSKNTEDQRQSVEDPSKNG-----SDS 278
Query: 303 RNNTADTQPAAKIDDILPETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKV 361
N +TQ I I P TD + K EKK +DFR+KLYLAPLTT GNLPFRRVCK
Sbjct: 279 ANRR-ETQ-VPPIKTIGPITDADIIKLRPCEKKQVDFRDKLYLAPLTTCGNLPFRRVCKR 336
Query: 362 LGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT 421
GAD+TCGEMAMCTNLLQGQASEWALL+RH+SEDLFGVQ+ G +PDT+ R EL++Q
Sbjct: 337 FGADITCGEMAMCTNLLQGQASEWALLKRHASEDLFGVQLEGCFPDTMTRCAELLNQNID 396
Query: 422 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNR 481
VDF+DIN GCPID+V KG G L+T+ + + I+ + +D P+T+K+RTG + N
Sbjct: 397 VDFVDINSGCPIDLVYKKGGGCGLMTRTSKFEQIVRGMNSVLDVPLTVKIRTGVQQNSNI 456
Query: 482 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD 541
LI ++ WG S +T+HGR+R+QRY+KLADWDYI CA+ A+ + + GNGDI SY D
Sbjct: 457 AHKLIPEMKKWGVSLITLHGRSREQRYTKLADWDYINTCAQLAAP-VPLFGNGDILSYED 515
Query: 542 WNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601
K + ++ M+ARGALIKPW+FTEIKE RHWDI+S ERL+I++DF FGLEHWGS
Sbjct: 516 AMKARET--GVSGIMVARGALIKPWLFTEIKESRHWDISSTERLDILRDFTHFGLEHWGS 573
Query: 602 DKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADW 661
D +GVE TR+FLLEWLS+ CRYIPVGLL+ +PQR+N RPP Y GRD LETLMAS DW
Sbjct: 574 DTQGVEKTRNFLLEWLSFLCRYIPVGLLERVPQRINERPPFYMGRDYLETLMASQHVDDW 633
Query: 662 IRISEMLLGKVPDGFTFAPKHKSNAY 687
I+ISEMLLG VP F+F PKHK+NAY
Sbjct: 634 IQISEMLLGPVPKNFSFLPKHKANAY 659
|
|
| MGI|MGI:2147092 Dus3l "dihydrouridine synthase 3-like (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1195 (425.7 bits), Expect = 2.7e-139, Sum P(2) = 2.7e-139
Identities = 223/382 (58%), Positives = 282/382 (73%)
Query: 307 ADTQPAAKIDDILPETDGS-LKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGAD 365
A T ++ + P TD ++ EKK +D KLYLAPLTT GNLPFRR+CK GAD
Sbjct: 258 AGTPQSSPVPTCGPLTDEDVIRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGAD 317
Query: 366 VTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFI 425
VTCGEMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+++ VDF+
Sbjct: 318 VTCGEMAVCTNLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFV 377
Query: 426 DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSL 485
DIN+GCPID+V KG G L+ + + + I+ +G +D P+T+K+RTG E + L
Sbjct: 378 DINVGCPIDLVYKKGGGCALMNRSAKFQQIVRGVNGVLDVPLTVKMRTGVQERVSLAHRL 437
Query: 486 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 545
+ ++ WG + VT+HGR+R+QRY++LADW YI QCA+ AS + + GNGDI S+ D N
Sbjct: 438 LPELRDWGVALVTLHGRSREQRYTRLADWPYIEQCAKVASP-MPLFGNGDILSFEDANCA 496
Query: 546 KSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKG 605
+A M+ARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +G
Sbjct: 497 MQT--GVAGIMVARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTHYGLEHWGSDTQG 554
Query: 606 VETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRIS 665
VE TR FLLEWLS+ CRY+PVGLL+ PQR+N RPP Y GRD LETLMAS AADWIRIS
Sbjct: 555 VERTRRFLLEWLSFLCRYVPVGLLERPPQRINERPPYYLGRDYLETLMASQQAADWIRIS 614
Query: 666 EMLLGKVPDGFTFAPKHKSNAY 687
EMLLG VP GF F PKHK+NAY
Sbjct: 615 EMLLGPVPPGFVFLPKHKANAY 636
|
|
| FB|FBgn0032819 CG10463 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 2.4e-123, Sum P(2) = 2.4e-123
Identities = 199/390 (51%), Positives = 271/390 (69%)
Query: 299 EEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRV 358
E+ T + + T IDD D H K +DFREKL L+PLTT+GNLPFRR+
Sbjct: 222 EKQTDSKSKPTATGCAIDDSAIGRDAD---H---KPAVDFREKLVLSPLTTLGNLPFRRI 275
Query: 359 CKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQ 418
CK GAD+TCGEMA LL+G EWAL +RH SED+FGVQ+CG P+ L + ++I +
Sbjct: 276 CKEFGADITCGEMACAQPLLKGMGQEWALTKRHQSEDVFGVQLCGNNPNMLNQAAQVIHE 335
Query: 419 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFE 477
VDFID+N+GCPID++ +G GS L+ + ++ + + + D+ P T+K+RTG +
Sbjct: 336 TAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNILELTVRSCAALSDRLPFTVKMRTGIYA 395
Query: 478 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY 537
K+ L+ + WGASAVT+HGR+R+QRY+K A+W YI +CA KA + V+GNGDI
Sbjct: 396 DKSVAHELLPLVEEWGASAVTLHGRSREQRYTKHANWAYIEECAAKAKR-MPVIGNGDIL 454
Query: 538 SYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLE 597
SY D+ + ++ P ++S MI RGALIKPWIF EIKE++ W +SG+R +++ F +GLE
Sbjct: 455 SYEDYMERRTLAPHVSSVMIGRGALIKPWIFQEIKEKQAWSPSSGQRYEMLQKFCNYGLE 514
Query: 598 HWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDS 657
HWGSD KGVETTR FLLEW S+ RYIP L PQ++N RP Y GRD++ETLM+S +
Sbjct: 515 HWGSDTKGVETTRRFLLEWQSFLYRYIPEALQTAPPQKINARPQKYRGRDEMETLMSSGN 574
Query: 658 AADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
AADW+++SE LLG+VP+GFTF PKHK+NA+
Sbjct: 575 AADWVKLSESLLGRVPEGFTFVPKHKANAF 604
|
|
| DICTYBASE|DDB_G0292686 dus3l "tRNA-dihydrouridine synthase 3-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
Identities = 271/684 (39%), Positives = 376/684 (54%)
Query: 24 NSTGVPVHNLTPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHS-STLVKE 82
NS V + E+ V + + + + P T+ + + TNE + +K
Sbjct: 11 NSEIKSVETIVEEQKVNETNTTLNAEVVETP-TKTEEKSKTEITNENKERSRGLEAKIKP 69
Query: 83 ------KK------SKRQLKRE-RQQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLD 129
KK K K+E R Q ++S + G V C + + C+FSHD++
Sbjct: 70 EFVLPFKKIEKVEVDKAAKKKEFRNQLRESMNDKLCPKISKGLV--CEFNETCKFSHDVE 127
Query: 130 GFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNT--LRKSSEVNGLN 187
+ A KP + G C + G C YGL C F H +VD N + K V LN
Sbjct: 128 KYLASKPKSI-GICQNFQTYGECKYGLNCYFGECH--IVDNKTIVNKELIGKVEPVKTLN 184
Query: 188 K---DVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGN 244
+ ++Q L N FPK++ G+ V + K + + NN+ +
Sbjct: 185 EVSNEIQIQLKTNNYPFPKSEIYFNENGI--------SVRQIKGRNNNNNKNNNKQNDNK 236
Query: 245 GCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRN 304
D D+ + EN +E E E E +
Sbjct: 237 RKENEKDDDDDKLNKKIKLENENTTTTTTTTTTTTTETTEKTEKTEKTEKTETTETK-KE 295
Query: 305 NTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA 364
+ +ID + P LK + EKK I+F +L LAPLTTVGNLPFRR+CK LGA
Sbjct: 296 EFKQSNENTEIDIMTP-----LKAN--EKKRINFENQLILAPLTTVGNLPFRRICKRLGA 348
Query: 365 DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDF 424
D+T GEMA+ T LL+G SE ALL+RH ED FGVQICG+Y D + E I+ + DF
Sbjct: 349 DITIGEMALTTKLLEGTKSELALLKRHPCEDKFGVQICGSYVDAAVKCAEFIENEIDADF 408
Query: 425 IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDS 484
+DIN GCPID+V N GAG+ L+ +P +++ ++ S ++ P TIK+R G E
Sbjct: 409 VDINSGCPIDLVCNMGAGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGKSEDAPTAHK 468
Query: 485 LIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544
LI +G WGA AVT+HGR+R QRYS+LA+WDY+ QC+ +S + ++GNGDIY+Y D
Sbjct: 469 LIPSLGEWGACAVTLHGRSRAQRYSRLANWDYVKQCSEVSS--IPLIGNGDIYNYQDV-V 525
Query: 545 HKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKK 604
+ D +++S MIARGALIKPWIFTEIKE+R WDI++ ERL+ ++DFA +GL+HWGSD+
Sbjct: 526 NIYDSSKVSSIMIARGALIKPWIFTEIKEKREWDISASERLDFIRDFANYGLDHWGSDRI 585
Query: 605 GVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRI 664
GV+ TR FLL WLS++ RYIPVGLLD + +N RPPAY GR DLETL+AS DWI+I
Sbjct: 586 GVDNTRKFLLNWLSFSHRYIPVGLLDKV-HYMNERPPAYFGRSDLETLLASTQVKDWIKI 644
Query: 665 SEMLLGKVPDGFTFAPKHKSNAYD 688
+EM LG V ++F PKH SN+Y+
Sbjct: 645 TEMFLGPVTSDYSFVPKHNSNSYE 668
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9T0J6 | DUS3L_ARATH | 1, ., 3, ., 1, ., - | 0.6560 | 0.9523 | 0.9551 | yes | no |
| Q6CWM0 | DUS3_KLULA | 1, ., 3, ., 1, ., 8, 9 | 0.3241 | 0.8571 | 0.8932 | yes | no |
| Q06053 | DUS3_YEAST | 1, ., 3, ., 1, ., 8, 9 | 0.3367 | 0.8658 | 0.8982 | yes | no |
| Q7XT07 | DUS3L_ORYSJ | 1, ., 3, ., 1, ., - | 0.6536 | 0.9307 | 0.9416 | yes | no |
| Q3KRC5 | DUS3L_RAT | 1, ., 3, ., 1, ., - | 0.4314 | 0.8181 | 0.8859 | yes | no |
| Q9UTH9 | DUS3_SCHPO | 1, ., 3, ., 1, ., 8, 9 | 0.3647 | 0.8023 | 0.9011 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 693 | |||
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 4e-93 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 3e-69 | |
| TIGR00737 | 319 | TIGR00737, nifR3_yhdG, putative TIM-barrel protein | 4e-52 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 2e-42 | |
| PRK10415 | 321 | PRK10415, PRK10415, tRNA-dihydrouridine synthase B | 2e-30 | |
| PRK10550 | 312 | PRK10550, PRK10550, tRNA-dihydrouridine synthase C | 8e-17 | |
| TIGR00742 | 318 | TIGR00742, yjbN, tRNA dihydrouridine synthase A | 3e-10 | |
| PRK11815 | 333 | PRK11815, PRK11815, tRNA-dihydrouridine synthase A | 2e-04 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 287 bits (738), Expect = 4e-93
Identities = 96/236 (40%), Positives = 132/236 (55%), Gaps = 5/236 (2%)
Query: 341 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQ 400
KL LAP+ V +LPFR +C+ GAD+ EM LL+G LL R+ E VQ
Sbjct: 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQ 60
Query: 401 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS 460
+ G+ P+TLA +++ ++ D ID+NMGCP V GAG+ LL P + I+ A
Sbjct: 61 LGGSDPETLAEAAKIV-EELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVR 119
Query: 461 GTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 520
V P+T+K+R G+ + + L + GASA+TVHGRTR+QRYS ADWDYI +
Sbjct: 120 EAVPIPVTVKIRLGW-DDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEI 178
Query: 521 ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRH 576
K + + V+ NGDI+S D + + MI RGAL PW+F EIKE
Sbjct: 179 --KEAVSIPVIANGDIFSLEDALRCLEQT-GVDGVMIGRGALGNPWLFREIKELLE 231
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 3e-69
Identities = 105/295 (35%), Positives = 151/295 (51%), Gaps = 20/295 (6%)
Query: 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALL 388
+ LI+ R ++ LAP+ V +LPFRR+ + LGA D+ EM LL G+ LL
Sbjct: 1 MLKIGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLL 60
Query: 389 RRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTK 448
E VQ+ G+ P+ LA ++ ++ D ID+N GCP VV GAG+ LL
Sbjct: 61 DELEEERPVAVQLGGSDPELLAEAAKIA-EELGADIIDLNCGCPSPKVVKGGAGAALLKN 119
Query: 449 PMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADI---GTWGASAVTVHGRTR 504
P + I++A V D P+T+K+R G+ + + + IA I GA A+TVHGRTR
Sbjct: 120 PELLAEIVKAMVEAVGDIPVTVKIRLGW-DDDDILALEIARILEDA--GADALTVHGRTR 176
Query: 505 QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH--KSDCPELASCMIARGAL 562
Q Y ADWDYI + ++A + V+ NGDI S D + + MI RGAL
Sbjct: 177 AQGYLGPADWDYIKE-LKEAVPSIPVIANGDIKSLEDAKEMLEYTGA---DGVMIGRGAL 232
Query: 563 IKPWIFTEIKEQRH---WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLL 614
PW+F +I T E L+I+++ LE++G KKG+ R L
Sbjct: 233 GNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYG--KKGLRRLRKHLG 285
|
Length = 323 |
| >gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 4e-52
Identities = 96/288 (33%), Positives = 140/288 (48%), Gaps = 21/288 (7%)
Query: 336 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 395
I + ++ LAP+ V + PFRR+ GA +T EM ++ LL E
Sbjct: 4 IQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDET 63
Query: 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455
VQ+ G+ PDT+A + I+++ D IDINMGCP+ + KGAGS LL P + I
Sbjct: 64 PISVQLFGSDPDTMAEAAK-INEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKI 122
Query: 456 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWD 515
++A VD P+T+K+R G+ + GA AVT+HGRTR Q YS A+WD
Sbjct: 123 VKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWD 182
Query: 516 YI---YQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC---MIARGALIKPWIFT 569
I Q R + V+GNGDI+S D E C MI RGAL PW+F
Sbjct: 183 IIARVKQAVR-----IPVIGNGDIFSPED----AKAMLETTGCDGVMIGRGALGNPWLFR 233
Query: 570 EIKE-----QRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHF 612
+I++ + T E+L+ + + +++G K +H
Sbjct: 234 QIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHI 281
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 2e-42
Identities = 93/286 (32%), Positives = 129/286 (45%), Gaps = 15/286 (5%)
Query: 344 LAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQIC 402
LAP+ V +LPFRR+ + GA D+ EM L+ + +L VQ+
Sbjct: 2 LAPMAGVTDLPFRRLVREYGAGDLVVTEMVTAKAQLRPEKQRELMLPELEEPTPLAVQLG 61
Query: 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT 462
G+ P LA +L+ D IDINMGCP V GAG+ LL P + I++A
Sbjct: 62 GSDPALLAEAAKLVADL-GADIIDINMGCPAKKVTRGGAGAALLRDPDLVAQIVKAVVKA 120
Query: 463 VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR 522
VD P+T+K+R G+ E + + GA A+TVHGRTR Q Y ADWD I Q +
Sbjct: 121 VDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGRTRAQNYEGPADWDAIKQVKQ 180
Query: 523 KASDDLQVLGNGDIYSYLDWNKH--KSDCPELASCMIARGALIKPWIFTEI----KEQRH 576
S + V+ NGDI D + + + MI RGAL PW+F E +
Sbjct: 181 AVS--IPVIANGDITDAEDAQRCLSYTGADGV---MIGRGALGNPWLFAEQHTVKTGEFD 235
Query: 577 WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCR 622
E I+ + + E +G DK +H L W
Sbjct: 236 PRPPLAEEAEIVLEHLSYLEEFYGEDKGLRHARKH--LAWYLKGFP 279
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|182440 PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 2e-30
Identities = 86/243 (35%), Positives = 123/243 (50%), Gaps = 20/243 (8%)
Query: 338 FREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE-DL 396
R +L AP+ + + PFR +C +GA +T EM M +N ++ + L H E +
Sbjct: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHIDEPGI 66
Query: 397 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGII 456
VQI G+ P +A I+ + IDINMGCP V K AGS LL P +K I+
Sbjct: 67 RTVQIAGSDPKEMADAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSIL 125
Query: 457 EATSGTVDKPITIKVRTGYF-EGKN--RIDSLIADIGTWGASAVTVHGRTRQQRYSKLAD 513
VD P+T+K+RTG+ E +N I L D G A+T+HGRTR ++ A+
Sbjct: 126 TEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGI---QALTIHGRTRACLFNGEAE 182
Query: 514 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS----DCPELASCMIARGALIKPWIFT 569
+D I +K S + V+ NGDI + K+ D + MI R A +PWIF
Sbjct: 183 YDSIRAVKQKVS--IPVIANGDIT-----DPLKARAVLDYTGADALMIGRAAQGRPWIFR 235
Query: 570 EIK 572
EI+
Sbjct: 236 EIQ 238
|
Length = 321 |
| >gnl|CDD|236713 PRK10550, PRK10550, tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 8e-17
Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 28/189 (14%)
Query: 390 RHSSEDLFGVQICGAYPDTLA----RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCL 445
R S L +Q+ G YP LA R VEL +D+N GCP V G G+ L
Sbjct: 58 RTPSGTLVRIQLLGQYPQWLAENAARAVELGSWG-----VDLNCGCPSKTVNGSGGGATL 112
Query: 446 LTKPMRM----KGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVH 500
L P + K + EA + P+T+KVR G+ G+ + + IAD + GA+ + VH
Sbjct: 113 LKDPELIYQGAKAMREAVPAHL--PVTVKVRLGWDSGERKFE--IADAVQQAGATELVVH 168
Query: 501 GRTRQQRY-SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC---M 556
GRT++ Y ++ +W I + ++ + + V+ NG+I+ DW + C + C M
Sbjct: 169 GRTKEDGYRAEHINWQAIGEIRQRLT--IPVIANGEIW---DWQSAQ-QCMAITGCDAVM 222
Query: 557 IARGALIKP 565
I RGAL P
Sbjct: 223 IGRGALNIP 231
|
Length = 312 |
| >gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 18/242 (7%)
Query: 341 KLYLAPLTTVGNLPFRRVCKVLGADVTC-GEMAMCTNLLQGQASEWALLRRHSSEDLFGV 399
+ +AP+ + FR ++L EM ++ G + +L+ E +
Sbjct: 2 RFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKD--ILKFSPEESPVAL 59
Query: 400 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT 459
Q+ G+ P+ LA+ ++ ++ D I++N+GCP D V N G+CL+ + ++A
Sbjct: 60 QLGGSDPNDLAKCAKIA-EKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAM 118
Query: 460 SGTVDKPITIKVRTG--YFEGKNRIDSLIADIGTWGASAVTVHGRT--------RQQRYS 509
V+ P+T+K R G + + + + G VH R ++ R
Sbjct: 119 QEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREI 178
Query: 510 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 569
++ +YQ +K L + NG I + +H S + M+ R A P++
Sbjct: 179 PPLRYERVYQL-KKDFPHLTIEINGGIKNSEQIKQHLS---HVDGVMVGREAYENPYLLA 234
Query: 570 EI 571
+
Sbjct: 235 NV 236
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318 |
| >gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-04
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 423 DFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRI 482
D I++N+GCP D V N G+CL+ +P + ++A V P+T+K R G +
Sbjct: 92 DEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGI----DDQ 147
Query: 483 DS------LIADIGTWGASAVTVHGR 502
DS + + G VH R
Sbjct: 148 DSYEFLCDFVDTVAEAGCDTFIVHAR 173
|
Length = 333 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 693 | |||
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 100.0 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 100.0 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 100.0 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 100.0 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 100.0 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 100.0 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 100.0 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 100.0 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 100.0 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 100.0 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 100.0 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 100.0 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 100.0 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 100.0 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 100.0 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 100.0 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 99.98 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.98 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 99.97 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 99.97 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.97 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 99.97 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 99.97 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 99.97 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 99.97 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 99.97 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.97 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.96 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.96 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 99.96 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.96 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.95 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 99.95 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 99.95 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 99.94 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.94 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.93 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 99.93 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.93 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.91 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.91 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.87 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.86 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.85 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.83 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.83 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.8 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.74 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.74 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.72 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.71 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 99.7 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.65 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.57 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.54 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.52 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 99.5 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.49 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.49 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.47 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.45 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.43 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.42 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 99.41 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.36 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.36 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 99.33 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.33 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.26 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.26 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.22 | |
| KOG0134 | 400 | consensus NADH:flavin oxidoreductase/12-oxophytodi | 99.12 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.05 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.98 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 98.97 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.94 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.89 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 98.81 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.81 | |
| PLN02535 | 364 | glycolate oxidase | 98.79 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 98.78 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.78 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 98.77 | |
| PLN02979 | 366 | glycolate oxidase | 98.76 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 98.76 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.76 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 98.73 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.71 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 98.68 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 98.67 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.66 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 98.65 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.64 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 98.64 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 98.62 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 98.61 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.6 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.6 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 98.59 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 98.58 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.55 | |
| KOG1677 | 332 | consensus CCCH-type Zn-finger protein [General fun | 98.51 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.48 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.46 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.46 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.43 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.43 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.39 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.36 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.34 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.29 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.28 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 98.28 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.23 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 98.21 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.2 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 98.18 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.17 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.16 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 98.15 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.13 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.11 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 98.11 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.11 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.1 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.06 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.04 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.04 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.03 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 98.03 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.01 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 97.99 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 97.99 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 97.97 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 97.97 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 97.96 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 97.93 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 97.92 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 97.92 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.91 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.89 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 97.89 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 97.89 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 97.88 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.86 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 97.86 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 97.83 | |
| PLN02591 | 250 | tryptophan synthase | 97.83 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 97.83 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.8 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.8 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.8 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.78 | |
| COG5063 | 351 | CTH1 CCCH-type Zn-finger protein [General function | 97.74 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 97.73 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 97.71 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 97.71 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 97.68 | |
| PF00642 | 27 | zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si | 97.67 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 97.67 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 97.63 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 97.61 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 97.61 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 97.6 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 97.58 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.57 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 97.56 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 97.56 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 97.56 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 97.55 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 97.52 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 97.51 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.49 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.45 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.43 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 97.38 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 97.36 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 97.35 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 97.33 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 97.24 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.24 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.22 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.2 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.19 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 97.19 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 97.17 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 97.16 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 97.14 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.12 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.12 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.1 | |
| PRK08005 | 210 | epimerase; Validated | 97.09 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.06 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 97.05 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.04 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 97.01 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 96.99 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 96.95 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 96.94 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 96.88 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 96.88 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 96.87 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 96.87 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 96.84 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 96.83 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 96.81 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 96.75 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.73 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 96.73 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.69 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 96.69 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.67 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 96.65 | |
| smart00356 | 27 | ZnF_C3H1 zinc finger. | 96.64 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 96.63 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 96.6 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 96.6 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 96.52 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 96.5 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 96.48 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 96.48 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 96.47 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 96.46 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 96.44 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 96.43 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 96.43 | |
| COG5063 | 351 | CTH1 CCCH-type Zn-finger protein [General function | 96.39 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 96.39 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 96.38 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 96.34 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 96.11 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 96.11 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 96.08 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 96.04 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 96.04 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 95.89 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 95.86 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 95.78 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 95.73 | |
| PF00642 | 27 | zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si | 95.68 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 95.68 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 95.62 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 95.58 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 95.57 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.55 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 95.5 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 95.49 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 95.49 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 95.47 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 95.45 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 95.43 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 95.43 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 95.41 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 95.32 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 95.26 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 95.24 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 95.22 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 95.16 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 95.14 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 95.07 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 95.05 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 95.03 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 94.98 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 94.94 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 94.94 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 94.92 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 94.91 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 94.87 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 94.85 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 94.85 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 94.81 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 94.8 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 94.8 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 94.76 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 94.76 | |
| PRK14057 | 254 | epimerase; Provisional | 94.72 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 94.71 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 94.66 | |
| KOG1763 | 343 | consensus Uncharacterized conserved protein, conta | 94.63 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 94.59 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 94.56 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 94.52 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 94.51 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 94.47 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 94.46 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.42 | |
| KOG2185 | 486 | consensus Predicted RNA-processing protein, contai | 94.41 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 94.39 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 94.39 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 94.38 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 94.37 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 94.36 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 94.34 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 94.34 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 94.34 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 94.31 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 94.3 | |
| smart00356 | 27 | ZnF_C3H1 zinc finger. | 94.29 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 94.21 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 94.15 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 94.15 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 94.02 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 93.92 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 93.91 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 93.83 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 93.79 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 93.78 | |
| KOG1677 | 332 | consensus CCCH-type Zn-finger protein [General fun | 93.74 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.7 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 93.67 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 93.66 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 93.62 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 93.6 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 93.53 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 93.53 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 93.49 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 93.4 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 93.38 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 93.37 | |
| PRK06852 | 304 | aldolase; Validated | 93.36 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 93.36 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 93.3 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 93.26 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 93.24 | |
| KOG1040 | 325 | consensus Polyadenylation factor I complex, subuni | 93.12 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 93.12 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 93.11 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 93.1 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 93.03 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.02 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 92.99 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.94 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 92.92 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 92.87 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 92.84 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 92.84 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 92.82 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 92.78 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 92.67 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 92.67 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 92.64 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 92.61 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 92.57 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 92.43 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 92.42 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 92.38 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 92.33 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 92.33 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 92.3 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 92.26 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 92.25 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 92.25 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 92.08 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.06 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 91.94 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 91.94 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 91.9 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 91.9 | |
| PLN02535 | 364 | glycolate oxidase | 91.87 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 91.84 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 91.83 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 91.73 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 91.72 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 91.68 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 91.63 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 91.62 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 91.58 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 91.57 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 91.55 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 91.54 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 91.52 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 91.49 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 91.45 | |
| COG5252 | 299 | Uncharacterized conserved protein, contains CCCH-t | 91.43 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 91.36 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 91.35 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 91.35 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 91.24 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 91.21 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 91.2 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 91.19 | |
| COG0413 | 268 | PanB Ketopantoate hydroxymethyltransferase [Coenzy | 91.16 | |
| PLN02979 | 366 | glycolate oxidase | 91.15 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 91.11 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 91.11 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 91.05 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 90.97 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 90.95 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 90.72 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 90.67 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 90.52 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 90.52 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 90.52 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 90.5 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 90.43 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 90.42 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.39 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 90.22 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 90.14 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 90.12 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.09 | |
| PRK06256 | 336 | biotin synthase; Validated | 89.84 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 89.82 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 89.73 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 89.72 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 89.7 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 89.51 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 89.41 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 89.18 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 89.15 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 88.95 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 88.88 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 88.87 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 88.8 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 88.77 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 88.71 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 88.71 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 88.66 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 88.63 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 88.58 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 88.54 | |
| KOG1595 | 528 | consensus CCCH-type Zn-finger protein [General fun | 88.48 | |
| PRK14567 | 253 | triosephosphate isomerase; Provisional | 88.42 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 88.37 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 88.18 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 88.17 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 88.14 | |
| PLN02389 | 379 | biotin synthase | 88.12 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 88.12 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 87.93 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 87.92 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 87.71 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 87.68 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 87.33 | |
| PF01487 | 224 | DHquinase_I: Type I 3-dehydroquinase; InterPro: IP | 87.33 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 87.28 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 87.25 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 87.21 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 87.2 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.2 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 87.15 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 87.09 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 87.08 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 86.99 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 86.99 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 86.75 | |
| PRK04452 | 319 | acetyl-CoA decarbonylase/synthase complex subunit | 86.63 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 86.59 | |
| PF14608 | 19 | zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type | 86.54 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 86.35 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 86.2 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 86.14 | |
| PRK10558 | 256 | alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro | 86.07 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 86.03 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 86.03 | |
| PRK10128 | 267 | 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | 85.97 | |
| PLN02389 | 379 | biotin synthase | 85.86 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 85.81 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 85.8 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 85.78 | |
| TIGR03239 | 249 | GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co | 85.63 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 85.52 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 85.37 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 85.22 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 84.92 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 84.88 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 84.78 | |
| KOG1492 | 377 | consensus C3H1-type Zn-finger protein [General fun | 84.7 | |
| TIGR03581 | 236 | EF_0839 conserved hypothetical protein EF_0839/AHA | 84.53 | |
| PRK15108 | 345 | biotin synthase; Provisional | 84.42 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 84.38 | |
| PRK14565 | 237 | triosephosphate isomerase; Provisional | 84.33 | |
| PRK08508 | 279 | biotin synthase; Provisional | 84.3 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 84.28 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 84.25 | |
| COG0284 | 240 | PyrF Orotidine-5'-phosphate decarboxylase [Nucleot | 84.19 | |
| COG5084 | 285 | YTH1 Cleavage and polyadenylation specificity fact | 84.09 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 83.98 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 83.98 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 83.98 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 83.88 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 83.78 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 83.74 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 83.67 | |
| PRK08508 | 279 | biotin synthase; Provisional | 83.49 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 83.14 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 83.09 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 83.05 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 82.91 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 82.77 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 82.66 | |
| cd00740 | 252 | MeTr MeTr subgroup of pterin binding enzymes. This | 82.61 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 82.56 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 82.28 | |
| KOG2494 | 331 | consensus C3H1-type Zn-finger protein [Transcripti | 82.22 | |
| PLN02489 | 335 | homocysteine S-methyltransferase | 82.02 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 81.93 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 81.84 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 81.84 | |
| PRK15108 | 345 | biotin synthase; Provisional | 81.63 |
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-159 Score=1271.80 Aligned_cols=594 Identities=50% Similarity=0.879 Sum_probs=488.8
Q ss_pred hhhhhccccccccccccCCCCCCCCccccccccccccccCcchhHhhhhhHHHH--h-hhhhhh--hhccccCChhhhcc
Q 005508 36 EELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQL--K-RERQQE--KKSASHLCPEVAKS 110 (693)
Q Consensus 36 ~~~~~~g~a~ik~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~--~-k~r~~~--~~~~~~LC~~~~~~ 110 (693)
...+++||||||+|||++...+..... ++..+.|...++.+ +.+||+++++ | .+++.+ -...++||++++++
T Consensus 9 ~~~~e~giapIK~eylvp~~~~~~~~~-~~~~~kR~~~~~~~--~~~~Kr~~k~~~k~~~~k~r~~~q~~n~LCPsli~g 85 (614)
T KOG2333|consen 9 DTSLERGIAPIKPEYLVPKENQKLAAE-NQAKSKRKRRGGNG--ETEKKRKRKRERKEGQNKNRDVAQVQNRLCPSLIQG 85 (614)
T ss_pred chhhhcCCcccCHhhcCCCchhhhhhc-ccccchhhhccCcc--chhhhhhhhhhhhhhccccchhhhhhhccChHhhcC
Confidence 567899999999999998874432211 11122222222221 1222222211 1 122222 12478999999999
Q ss_pred CCCCCCCCCCCCCCCCChhhhhhcCCCCCCCCCCCcCcccccCCCCCcccccCccccccccC---ccc--cccCCccccC
Q 005508 111 GDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAG---STN--TLRKSSEVNG 185 (693)
Q Consensus 111 ~~~~~C~~Gd~Crf~Hd~~~yl~~K~~di~~~Cp~f~~~G~Cp~G~~CRF~~sH~~~~~~~~---~~~--~~~~~~~~N~ 185 (693)
+...|+|||+|||.|||++||+.|++||++.||+|+++|+||||++|||+++|+++..... ... ......+.|.
T Consensus 86 -~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~~~~~kek~~d~~~~~~t~N~ 164 (614)
T KOG2333|consen 86 -DISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLGAHLDIEGNNLIQKEKDPDGQFPPTTKNG 164 (614)
T ss_pred -CCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhhcccCccccchhhhhhCcccCCCCccccc
Confidence 4568999999999999999999999999999999999999999999999999999764322 111 1234456799
Q ss_pred CCHHHHHHHhhccCCCcchHHHHHHhCcCCCcccchhhhhhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005508 186 LNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPE 265 (693)
Q Consensus 186 ~~~~~~~~l~k~~~~f~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (693)
+++++|.+|||+.|+|+||+++|+.++...... +.+..++. +..+...+. .....+..+. + +.
T Consensus 165 ~s~elq~~LrKre~~fekse~~l~~~~~~~~~~-~~~e~~~~--e~ap~ee~~------~~~~~~~g~~--~------~~ 227 (614)
T KOG2333|consen 165 VSKELQVDLRKREYDFEKSEEILEIIDSFEEAR-KMKEEEEV--EKAPSEENQ------EDQEQSVGPQ--T------EQ 227 (614)
T ss_pred cCHHHHHHHHHhhcChHHHHHHHHHHhcccccc-cCCccchh--hcCcchhcc------cccccccccc--c------cc
Confidence 999999999999999999999999877543111 11000000 000000000 0000000000 0 00
Q ss_pred CCcccCCcchhhccccccccccCCCCCCCcccccccccCCcCCCCCccccccCCCCCCCCCCcCccccCCccccCcEEEc
Q 005508 266 ENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLA 345 (693)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ek~~l~lknriiLA 345 (693)
++... + .... ....+....+ |+.++++|.||+.|+|+.++|||
T Consensus 228 ~~ee~----------------t--------------~~k~------~~~sv~~~~d-e~si~l~p~eKk~lD~r~K~~La 270 (614)
T KOG2333|consen 228 RLEEL----------------T--------------EHKM------KPTSVGLKYD-EDSIRLRPQEKKLLDFRDKKYLA 270 (614)
T ss_pred ccccc----------------c--------------cccC------ccceeccccc-chhhccChhcccccccccceeec
Confidence 00000 0 0000 0000011112 44579999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEE
Q 005508 346 PLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFI 425 (693)
Q Consensus 346 PMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~I 425 (693)
|||||||+||||||+.+|||+||+||+++.+|++|+.+||+|+++|.+|..|||||+|+.||.+++||+++.+.+.+|+|
T Consensus 271 PLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~kaaq~i~e~~~VDFI 350 (614)
T KOG2333|consen 271 PLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAKAAQVIAETCDVDFI 350 (614)
T ss_pred cccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHHHHHHHHhhcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHH-HcCCCEEEEeccc
Q 005508 426 DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIG-TWGASAVTVHGRT 503 (693)
Q Consensus 426 DLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~-eaG~daItVHgRt 503 (693)
|||||||++.|+++|+||+||++|.++.+||++|..++ ++|||||||+|..++++.++.|++.+. +||+++||+|||+
T Consensus 351 DlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRS 430 (614)
T KOG2333|consen 351 DLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRS 430 (614)
T ss_pred eccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCch
Confidence 99999999999999999999999999999999999999 679999999999999999999999998 9999999999999
Q ss_pred ccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCCHHH
Q 005508 504 RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGE 583 (693)
Q Consensus 504 r~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s~~E 583 (693)
|+|||++.|||+||.+|++.+...+||||||||+|++||++.+..++.+|+||||||||++||||++|+++++||+|+.|
T Consensus 431 RqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSte 510 (614)
T KOG2333|consen 431 RQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTE 510 (614)
T ss_pred hhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCCccchH
Confidence 99999999999999999998863499999999999999999998756699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhCCCccccccccccCCCCCCCCCCchHhHHhcCCCHHHHHH
Q 005508 584 RLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIR 663 (693)
Q Consensus 584 rl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls~~~ryip~glle~~p~~~n~rpp~~~~R~~le~L~~s~~~~dw~k 663 (693)
||+||++|++|+|+|||||++||++|||||+|||||+|||||+||+|++||+||+|||.|.|||+|||||+|.+++||+|
T Consensus 511 RldiL~df~nyGLeHWGSDt~GVetTRRFlLE~lSF~~RYiPv~l~e~lpqriN~RPp~y~gRdelETLm~S~ka~DWvk 590 (614)
T KOG2333|consen 511 RLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFLSFFHRYIPVGLLEVLPQRINDRPPLYTGRDELETLMSSQKAADWVK 590 (614)
T ss_pred HHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHHHHHHhhchHHHhhcCchhhccCCccccchhHHHHHHhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCccCccCCCccc
Q 005508 664 ISEMLLGKVPDGFTFAPKHKSNAY 687 (693)
Q Consensus 664 i~e~~lgp~~~~~~f~pKHksnsy 687 (693)
||||||||+|++|+|+||||||||
T Consensus 591 iSe~lLGpvPegFtF~PKHKanay 614 (614)
T KOG2333|consen 591 ISEMLLGPVPEGFTFTPKHKANAY 614 (614)
T ss_pred HHHHHcCCCCCCceecccccccCC
Confidence 999999999999999999999999
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=532.65 Aligned_cols=312 Identities=35% Similarity=0.535 Sum_probs=280.9
Q ss_pred ccCCccccCcEEEccCCCCCcHHHHHHHHHcCC-CEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHH
Q 005508 332 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLA 410 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~v~dlpFRrl~~~~Ga-dl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~ 410 (693)
.++.+.++++++||||+++||+|||++|+++|+ +++||||+++.+++++....+..+...+.+.|++|||+|++|+.++
T Consensus 3 ~~~~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~ 82 (323)
T COG0042 3 KIGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLA 82 (323)
T ss_pred ccccccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHH
Confidence 466778899999999999999999999999999 9999999999999999998888777667789999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHH
Q 005508 411 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADI 489 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L 489 (693)
+||+++. +.|+|+||||||||+++|++.|+||+||++|+++.+||++|++++ ++|||||||+||++.+..+.++++.+
T Consensus 83 eaA~~~~-~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~ 161 (323)
T COG0042 83 EAAKIAE-ELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARIL 161 (323)
T ss_pred HHHHHHH-hcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHH
Confidence 9999998 678999999999999999999999999999999999999999999 59999999999987665788999999
Q ss_pred HHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchh
Q 005508 490 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 569 (693)
Q Consensus 490 ~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~ 569 (693)
+++|+++|||||||+.|+|.+++||++|+++++.++ ++|||+||||.|++|+.++|+. +||||||||||++.|||||.
T Consensus 162 ~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~-~ipvi~NGdI~s~~~a~~~l~~-tg~DgVMigRga~~nP~l~~ 239 (323)
T COG0042 162 EDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVP-SIPVIANGDIKSLEDAKEMLEY-TGADGVMIGRGALGNPWLFR 239 (323)
T ss_pred HhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCC-CCeEEeCCCcCCHHHHHHHHHh-hCCCEEEEcHHHccCCcHHH
Confidence 999999999999999999999999999999999995 3999999999999999999997 99999999999999999999
Q ss_pred HH---HhccCCCCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhCCCccccccccccCCCCCCCCCC
Q 005508 570 EI---KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGR 646 (693)
Q Consensus 570 eI---ke~~~~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls~~~ryip~glle~~p~~~n~rpp~~~~R 646 (693)
+| ..+...+++..|+++++..|+++.++++| ..++..+|+|+. ||.+.+|.. -..|
T Consensus 240 ~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~r~h~~----~~~~~~~~a---------------~~~r 298 (323)
T COG0042 240 QIDYLETGELLPPTLAEVLDILREHLELLLEYYG--KKGLRRLRKHLG----YYLKGLPGA---------------RELR 298 (323)
T ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHH----HHhhcCccH---------------HHHH
Confidence 96 22333457899999999999999999998 688999998876 777777643 1223
Q ss_pred chHhHHhcCCCHHHHHHHHHHhcC
Q 005508 647 DDLETLMASDSAADWIRISEMLLG 670 (693)
Q Consensus 647 ~~le~L~~s~~~~dw~ki~e~~lg 670 (693)
..+....+..+..++++.++.
T Consensus 299 ---~~~~~~~~~~~~~~~l~~~~~ 319 (323)
T COG0042 299 ---RALNKAEDGAEVRRALEAVFE 319 (323)
T ss_pred ---HHHhccCcHHHHHHHHHHHHh
Confidence 557888888887777766653
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=514.06 Aligned_cols=311 Identities=27% Similarity=0.379 Sum_probs=281.4
Q ss_pred cCCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHH
Q 005508 333 KKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLART 412 (693)
Q Consensus 333 k~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~A 412 (693)
++.+.++++++||||+++||+|||++|+++|++++||||+++.++.......+..+...+.+.|+++||+|++|+.|++|
T Consensus 3 i~~~~~~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~a 82 (321)
T PRK10415 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADA 82 (321)
T ss_pred cCCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHH
Confidence 56788999999999999999999999999999999999999998877666555555455666889999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHc
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 492 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ea 492 (693)
|+++. +.|+|+||||||||++++.+.|+|++|+++|+++.+|+++|++++++||+||||.||+++..++.++++.++++
T Consensus 83 a~~~~-~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~ 161 (321)
T PRK10415 83 ARINV-ESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC 161 (321)
T ss_pred HHHHH-HCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh
Confidence 99887 57999999999999999999999999999999999999999999999999999999987666889999999999
Q ss_pred CCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHH
Q 005508 493 GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 493 G~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIk 572 (693)
|+++|+||+|++.|+|++.++|++|+++++.+ ++|||+||||.|++|+.++++. +|||+||||||+|.|||||.+++
T Consensus 162 G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~nGgI~s~~da~~~l~~-~gadgVmiGR~~l~nP~if~~~~ 238 (321)
T PRK10415 162 GIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIANGDITDPLKARAVLDY-TGADALMIGRAAQGRPWIFREIQ 238 (321)
T ss_pred CCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHhc-cCCCEEEEChHhhcCChHHHHHH
Confidence 99999999999999999999999999999998 7999999999999999999986 89999999999999999999998
Q ss_pred hcc----C-CCCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhCCCccccccccccCCCCCCCCCCc
Q 005508 573 EQR----H-WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRD 647 (693)
Q Consensus 573 e~~----~-~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls~~~ryip~glle~~p~~~n~rpp~~~~R~ 647 (693)
+.. . .+++..|+++++.+|++...+++|+ ..++..+|+|+. ||.+++|.+ ...|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~----~y~~~~~~~---------------~~~r- 297 (321)
T PRK10415 239 HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP-AKGYRIARKHVS----WYLQEHAPN---------------DQFR- 297 (321)
T ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHH----HHHhcCCch---------------HHHH-
Confidence 742 2 2467889999999999999999986 689999999886 788888765 2234
Q ss_pred hHhHHhcCCCHHHHHHHHHHhcC
Q 005508 648 DLETLMASDSAADWIRISEMLLG 670 (693)
Q Consensus 648 ~le~L~~s~~~~dw~ki~e~~lg 670 (693)
..|++..+.+|+.++.+.|+.
T Consensus 298 --~~~~~~~~~~~~~~~~~~~~~ 318 (321)
T PRK10415 298 --RTFNAIEDASEQLEALEAYFE 318 (321)
T ss_pred --HHHHcCCCHHHHHHHHHHHHH
Confidence 679999999999999988874
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=507.33 Aligned_cols=299 Identities=23% Similarity=0.317 Sum_probs=262.3
Q ss_pred cEEEccCCCCCcHHHHHHHHHcC-CCEEEecccccchhccCChhhhh---hhh---ccCCCCeEEEEecCCCHHHHHHHH
Q 005508 341 KLYLAPLTTVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWA---LLR---RHSSEDLFGVQICGAYPDTLARTV 413 (693)
Q Consensus 341 riiLAPMt~v~dlpFRrl~~~~G-adl~~TEM~~a~~ll~g~~~e~~---ll~---~h~~e~p~gvQL~G~~pe~~~~AA 413 (693)
+++||||+++||+|||++|+++| ++++||||+++..+......... .+. .++.+.|+++||+|++|+.|++||
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 68999999999999999999998 89999999999988876544322 222 567789999999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHHHHHHHHHHH
Q 005508 414 ELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRIDSLIADIGT 491 (693)
Q Consensus 414 ~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~~~la~~L~e 491 (693)
+++. +.|+|+||||||||.+++.+.|+|++||++|+++.+||++|++++ ++|||||||+||++. +++.++++.|++
T Consensus 82 ~~~~-~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~-~~~~~~a~~l~~ 159 (312)
T PRK10550 82 ARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSG-ERKFEIADAVQQ 159 (312)
T ss_pred HHHH-HcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCc-hHHHHHHHHHHh
Confidence 9997 679999999999999999999999999999999999999999988 599999999999654 347899999999
Q ss_pred cCCCEEEEecccccCccCCCc-cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhH
Q 005508 492 WGASAVTVHGRTRQQRYSKLA-DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 570 (693)
Q Consensus 492 aG~daItVHgRtr~q~ytg~A-dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~e 570 (693)
+|+++|+||+|++.|+|++++ +|++|+++++.+ +||||+||||.|++|+.++++. +|||+||||||+|.|||||++
T Consensus 160 ~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi~nGdI~t~~da~~~l~~-~g~DgVmiGRg~l~nP~lf~~ 236 (312)
T PRK10550 160 AGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVIANGEIWDWQSAQQCMAI-TGCDAVMIGRGALNIPNLSRV 236 (312)
T ss_pred cCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEEEeCCcCCHHHHHHHHhc-cCCCEEEEcHHhHhCcHHHHH
Confidence 999999999999999999975 999999999998 7999999999999999999987 899999999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhCCCccccccccccCCCCCCCCCCchHh
Q 005508 571 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLE 650 (693)
Q Consensus 571 Ike~~~~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls~~~ryip~glle~~p~~~n~rpp~~~~R~~le 650 (693)
++.+. ..++..|+++++++|+.+..++.+ ...++..+|+|+. ||.+++|.+ ...| .
T Consensus 237 ~~~g~-~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~rk~~~----~y~~~~~~~---------------~~~r---~ 292 (312)
T PRK10550 237 VKYNE-PRMPWPEVVALLQKYTRLEKQGDT-GLYHVARIKQWLG----YLRKEYDEA---------------TELF---Q 292 (312)
T ss_pred hhcCC-CCCCHHHHHHHHHHHHHHHHhcCc-chhHHHHHHHHHH----HHHhcCCcH---------------HHHH---H
Confidence 98765 356788999999999986555444 3457777888665 888888775 2235 7
Q ss_pred HHhcCCCHHHHHHHHHHh
Q 005508 651 TLMASDSAADWIRISEML 668 (693)
Q Consensus 651 ~L~~s~~~~dw~ki~e~~ 668 (693)
.|+...+.++..++.+.+
T Consensus 293 ~i~~~~~~~e~~~~~~~~ 310 (312)
T PRK10550 293 EIRALNNSPDIARAIQAI 310 (312)
T ss_pred HHHcCCCHHHHHHHHHhh
Confidence 799999999998887653
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=515.42 Aligned_cols=300 Identities=33% Similarity=0.527 Sum_probs=235.9
Q ss_pred EEccCCCCCcHHHHHHHHHcCCC-EEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCC
Q 005508 343 YLAPLTTVGNLPFRRVCKVLGAD-VTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT 421 (693)
Q Consensus 343 iLAPMt~v~dlpFRrl~~~~Gad-l~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG 421 (693)
+||||+++||+|||++|+++|++ ++||||+++..+++.....+.++..++.+.|+++||+|++|+.|++||+++. ..|
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~-~~~ 79 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVA-ELG 79 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHC-CTT
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhh-ccC
Confidence 69999999999999999999998 9999999999999999888888989999999999999999999999999998 479
Q ss_pred CcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEec
Q 005508 422 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHG 501 (693)
Q Consensus 422 ~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHg 501 (693)
+|+||||||||.+++.+.|+|++||++|+++.+||++|++++++|||||||+||+++.+++.+++++|+++|+++||||+
T Consensus 80 ~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~ 159 (309)
T PF01207_consen 80 FDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHG 159 (309)
T ss_dssp -SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEEC
T ss_pred CcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEec
Confidence 99999999999999999999999999999999999999999999999999999987788899999999999999999999
Q ss_pred ccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchh---HHHhccC-C
Q 005508 502 RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT---EIKEQRH-W 577 (693)
Q Consensus 502 Rtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~---eIke~~~-~ 577 (693)
||+.|+|.+++||++|+++++.+ +||||+||||+|++|+.++++. +||||||||||+|.|||||. .+..+.. .
T Consensus 160 Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~~~~~~~-tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~ 236 (309)
T PF01207_consen 160 RTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDAERMLEQ-TGADGVMIGRGALGNPWLFREIDQIKEGEPEP 236 (309)
T ss_dssp S-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHHHHHCCC-H-SSEEEESHHHCC-CCHHCHHHCHHHHTT--
T ss_pred CchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHHHHHHHh-cCCcEEEEchhhhhcCHHhhhhhhhccCCCCC
Confidence 99999999999999999999999 6999999999999999999886 89999999999999999999 4444433 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhCCCccccccccccCCCCCCCCCCchHhHHhcCCC
Q 005508 578 DITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDS 657 (693)
Q Consensus 578 d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls~~~ryip~glle~~p~~~n~rpp~~~~R~~le~L~~s~~ 657 (693)
.++..++++++.+|+++..+++|. ..++..+|+++. +|++.+|.. ...| ..|..+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~----~y~~~~~~~---------------~~~r---~~l~~~~~ 293 (309)
T PF01207_consen 237 FPPIAERLDIILRHYDYMEEFYGE-EKALRQMRKHLK----WYFKGFPGA---------------RKFR---RELNKCKT 293 (309)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHC-CHHHHHHHTTCC----CCTTTSTTH---------------HHHH---HHHCCH-S
T ss_pred CCchhHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHH----HHHccCCcH---------------HHHH---HHHHhhCC
Confidence 334679999999999999999987 567888888765 666666554 1224 67788888
Q ss_pred HHHHHHHHH-Hhc
Q 005508 658 AADWIRISE-MLL 669 (693)
Q Consensus 658 ~~dw~ki~e-~~l 669 (693)
..+..++++ .|+
T Consensus 294 ~~e~~~~l~~~~~ 306 (309)
T PF01207_consen 294 LEEFLELLEEAFL 306 (309)
T ss_dssp HHHHHHHH-----
T ss_pred HHHHhhhhccccc
Confidence 888888877 544
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=501.89 Aligned_cols=302 Identities=22% Similarity=0.313 Sum_probs=258.8
Q ss_pred CcEEEccCCCCCcHHHHHHHHHcCC-CEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhh
Q 005508 340 EKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQ 418 (693)
Q Consensus 340 nriiLAPMt~v~dlpFRrl~~~~Ga-dl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~ 418 (693)
++++||||+++||+|||++|+++|+ +++||||+++..++++... .++..++.+.|+++||+|++|+.|++||+++.
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~- 77 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAE- 77 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHH-
Confidence 5799999999999999999999998 9999999999999998766 47788899999999999999999999999997
Q ss_pred hCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCCh--hHHHHHHHHHHHcCCCE
Q 005508 419 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGK--NRIDSLIADIGTWGASA 496 (693)
Q Consensus 419 ~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~--~~~~~la~~L~eaG~da 496 (693)
++|||+||||||||.++++++|+|++||++|+++.+||++|++++++|||||||+||++.. .+++++++.|+++|+++
T Consensus 78 ~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~ 157 (318)
T TIGR00742 78 KRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQN 157 (318)
T ss_pred hCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCE
Confidence 5799999999999999999999999999999999999999999999999999999997643 57889999999999999
Q ss_pred EEEecccc-cCccCCC-------ccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCch
Q 005508 497 VTVHGRTR-QQRYSKL-------ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 568 (693)
Q Consensus 497 ItVHgRtr-~q~ytg~-------Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF 568 (693)
|+|||||+ .|+|++. ++|++|+++++.++ +||||+||||+|++|+.+++. |||+||||||+|.|||||
T Consensus 158 itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~NGdI~s~~da~~~l~---g~dgVMigRgal~nP~if 233 (318)
T TIGR00742 158 FIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEINGGIKNSEQIKQHLS---HVDGVMVGREAYENPYLL 233 (318)
T ss_pred EEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEEECCcCCHHHHHHHHh---CCCEEEECHHHHhCCHHH
Confidence 99999997 6777654 49999999999885 699999999999999999884 799999999999999999
Q ss_pred hHHHhccC----CCCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhCCCccccccccccCCCCCCCC
Q 005508 569 TEIKEQRH----WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYS 644 (693)
Q Consensus 569 ~eIke~~~----~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls~~~ryip~glle~~p~~~n~rpp~~~ 644 (693)
.++.+... ..++..|+++.+.+|++...++ ..++..+|+|+. ||.+++|.+ ..
T Consensus 234 ~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~rk~~~----~y~~g~~~~---------------~~ 290 (318)
T TIGR00742 234 ANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ----GLSLNHITRHLL----GLFQGKPGA---------------KQ 290 (318)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc----cchHHHHHHHHH----HHHccCCCH---------------HH
Confidence 99986432 2356778888888888876554 368999999887 677788776 33
Q ss_pred CCchHhHHhcCCCHHHHHHHHHHhcCCCC
Q 005508 645 GRDDLETLMASDSAADWIRISEMLLGKVP 673 (693)
Q Consensus 645 ~R~~le~L~~s~~~~dw~ki~e~~lgp~~ 673 (693)
.|+.+.++..... .-..+.|+.+...|
T Consensus 291 ~r~~~~~~~~~~~--~~~~~~~~~~~~~~ 317 (318)
T TIGR00742 291 WRRYLSENAPKAG--AGIEVLETALETVP 317 (318)
T ss_pred HHHHHHhcccCCC--CcHHHHHHHHHhcc
Confidence 4655555444422 44456666655433
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-57 Score=482.84 Aligned_cols=311 Identities=31% Similarity=0.478 Sum_probs=281.9
Q ss_pred CCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHH
Q 005508 334 KLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTV 413 (693)
Q Consensus 334 ~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA 413 (693)
+++.++++++||||+++|++|||++|+++|++++||||+++..+++.....+.++..++.+.|+++||+|++|+.|++||
T Consensus 2 ~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa 81 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAA 81 (319)
T ss_pred CCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHH
Confidence 57788999999999999999999999999999999999999999988877777888888999999999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcC
Q 005508 414 ELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG 493 (693)
Q Consensus 414 ~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG 493 (693)
+++. ++|+|+||||||||..++.+.++|++|+++|+++.+|+++|++++++||+||+|+||.++..++.+++++|+++|
T Consensus 82 ~~~~-~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G 160 (319)
T TIGR00737 82 KINE-ELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAG 160 (319)
T ss_pred HHHH-hCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhC
Confidence 9997 689999999999999888888999999999999999999999999999999999999776667889999999999
Q ss_pred CCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 494 ASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 494 ~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
+++|+||+|++.++|.++++|++++++++.+ ++|||+||||.|++|+.++++. +|||+||||||+|.|||||+++++
T Consensus 161 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~~~~da~~~l~~-~gad~VmigR~~l~~P~l~~~~~~ 237 (319)
T TIGR00737 161 AQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNGDIFSPEDAKAMLET-TGCDGVMIGRGALGNPWLFRQIEQ 237 (319)
T ss_pred CCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHh-hCCCEEEEChhhhhCChHHHHHHH
Confidence 9999999999999999999999999999998 6999999999999999999976 899999999999999999999976
Q ss_pred cc----C-CCCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhCCCccccccccccCCCCCCCCCCch
Q 005508 574 QR----H-WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDD 648 (693)
Q Consensus 574 ~~----~-~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls~~~ryip~glle~~p~~~n~rpp~~~~R~~ 648 (693)
.. . .+++..|+++++.+|++...++||+ ..++..+|+|+. +|.+++|.. +.-
T Consensus 238 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~----~~~~~~~~~------------------~~~ 294 (319)
T TIGR00737 238 YLTTGKYKPPPTFAEKLDAILRHLQLLADYYGE-SKGLRIARKHIA----WYLKGFPGN------------------AAL 294 (319)
T ss_pred HHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHH----HHHhcCCcH------------------HHH
Confidence 32 2 2467889999999999999999985 688999999876 555666554 222
Q ss_pred HhHHhcCCCHHHHHHHHHHhcCC
Q 005508 649 LETLMASDSAADWIRISEMLLGK 671 (693)
Q Consensus 649 le~L~~s~~~~dw~ki~e~~lgp 671 (693)
...|+++.++.+|.++.+.|+.+
T Consensus 295 r~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T TIGR00737 295 RQTLNHASSFQEVKQLLDDFFET 317 (319)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhh
Confidence 27799999999999999988753
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=472.84 Aligned_cols=283 Identities=22% Similarity=0.335 Sum_probs=241.1
Q ss_pred cCCccccCcEEEccCCCCCcHHHHHHHHHcCC-CEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHH
Q 005508 333 KKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLAR 411 (693)
Q Consensus 333 k~~l~lknriiLAPMt~v~dlpFRrl~~~~Ga-dl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~ 411 (693)
|-+...+++++||||+++||+|||++|+++|+ +++||||+++..++++. .+.++..++.+.|+++||+|++|+.|++
T Consensus 4 ~~~~~~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~ 81 (333)
T PRK11815 4 KMSKLPSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAE 81 (333)
T ss_pred ccccCCCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHH
Confidence 33445678999999999999999999999997 99999999999999877 5677888899999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCC--hhHHHHHHHHH
Q 005508 412 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG--KNRIDSLIADI 489 (693)
Q Consensus 412 AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~--~~~~~~la~~L 489 (693)
||+++. ++|||+||||||||.++++++|||++|+++|+++.+||+++++++++||+||+|+|+++. ..++.++++.|
T Consensus 82 aA~~~~-~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l 160 (333)
T PRK11815 82 AAKLAE-DWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTV 160 (333)
T ss_pred HHHHHH-hcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHH
Confidence 999998 689999999999999999999999999999999999999999999999999999998764 34678999999
Q ss_pred HHcCCCEEEEecccc-cCccC-------CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHH
Q 005508 490 GTWGASAVTVHGRTR-QQRYS-------KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 490 ~eaG~daItVHgRtr-~q~yt-------g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 561 (693)
+++|+++|+||+|++ .|+|. ++++|++++++++.++ ++|||+||||.|++|+.+++. +||+||||||+
T Consensus 161 ~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~iPVI~nGgI~s~eda~~~l~---~aDgVmIGRa~ 236 (333)
T PRK11815 161 AEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-HLTIEINGGIKTLEEAKEHLQ---HVDGVMIGRAA 236 (333)
T ss_pred HHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-CCeEEEECCcCCHHHHHHHHh---cCCEEEEcHHH
Confidence 999999999999986 55565 4589999999999864 699999999999999999885 49999999999
Q ss_pred hhCCCchhHHHhccCCCC-CHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhCCCc
Q 005508 562 LIKPWIFTEIKEQRHWDI-TSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVG 627 (693)
Q Consensus 562 L~nPwiF~eIke~~~~d~-s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls~~~ryip~g 627 (693)
|.|||+|+++++...... ....+.+++..|++|+.++|+. ..++..+|+|+. +|.+++|..
T Consensus 237 l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~----~y~~~~~~~ 298 (333)
T PRK11815 237 YHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GGRLNHITRHML----GLFQGLPGA 298 (333)
T ss_pred HhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-CchHHHHHHHHH----HHHcCCCCH
Confidence 999999999987543321 1123344444555555555543 226888998876 777777765
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=441.85 Aligned_cols=257 Identities=25% Similarity=0.414 Sum_probs=228.1
Q ss_pred EEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCC
Q 005508 343 YLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTV 422 (693)
Q Consensus 343 iLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~ 422 (693)
++|||+++|.+|||+||+.+|++++||||+.+..+++.....-..+...+.+.|++||++|++|+.|.+||+++... +
T Consensus 22 i~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y--~ 99 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPY--C 99 (358)
T ss_pred ccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHhhhh--c
Confidence 89999999999999999999999999999999999987655444556678899999999999999999999999853 3
Q ss_pred cEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecc
Q 005508 423 DFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGR 502 (693)
Q Consensus 423 D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgR 502 (693)
|+||||||||...+.+.|||+.||.+|+++.+||++++..++.|||+|||++. +...+++++++++++|++.+|||||
T Consensus 100 D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~--d~~kTvd~ak~~e~aG~~~ltVHGR 177 (358)
T KOG2335|consen 100 DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFV--DLEKTVDYAKMLEDAGVSLLTVHGR 177 (358)
T ss_pred CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecC--cHHHHHHHHHHHHhCCCcEEEEecc
Confidence 99999999999999999999999999999999999999999999999999984 4578999999999999999999999
Q ss_pred cccCcc--CCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCC
Q 005508 503 TRQQRY--SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDIT 580 (693)
Q Consensus 503 tr~q~y--tg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s 580 (693)
|+.|+- ++++||++|+.|++.++ +||||+||+|.+++|+..++.. +||||||+|||+|.|||+|.. .+. .+
T Consensus 178 tr~~kg~~~~pad~~~i~~v~~~~~-~ipviaNGnI~~~~d~~~~~~~-tG~dGVM~arglL~NPa~F~~--~~~--~~- 250 (358)
T KOG2335|consen 178 TREQKGLKTGPADWEAIKAVRENVP-DIPVIANGNILSLEDVERCLKY-TGADGVMSARGLLYNPALFLT--AGY--GP- 250 (358)
T ss_pred cHHhcCCCCCCcCHHHHHHHHHhCc-CCcEEeeCCcCcHHHHHHHHHH-hCCceEEecchhhcCchhhcc--CCC--CC-
Confidence 999986 89999999999999996 4999999999999999999986 999999999999999999965 111 11
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 005508 581 SGERLNIMKDFARFGLEHWGSDKKGVETTRHFLL 614 (693)
Q Consensus 581 ~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~ 614 (693)
.-.+++.+|+.+..++.|.. -....|.||.
T Consensus 251 --~~~~~~~~~l~~~~e~~g~~--~~~~~~~Hl~ 280 (358)
T KOG2335|consen 251 --TPWGCVEEYLDIAREFGGLS--SFSLIRHHLF 280 (358)
T ss_pred --CHHHHHHHHHHHHHHcCCCc--hhhHHHHHHH
Confidence 22478899999999998864 2344555543
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=387.94 Aligned_cols=229 Identities=41% Similarity=0.675 Sum_probs=216.7
Q ss_pred cEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhC
Q 005508 341 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQC 420 (693)
Q Consensus 341 riiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~a 420 (693)
+++||||+++|++|||++|+++|++++||||+.+..++......+.++..+..+.|+++||+|++|+.|+++|+++. ++
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~-~a 79 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVE-EL 79 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHH-hc
Confidence 57999999999999999999999999999999999999999888888888889999999999999999999999998 68
Q ss_pred CCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEe
Q 005508 421 TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 500 (693)
Q Consensus 421 G~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVH 500 (693)
|||+||||+|||..++++++||++|+++++++.++|+++++++++||+||+|.||.+. .++.++++.|+++|+++|+||
T Consensus 80 G~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~-~~~~~~~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 80 GADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE-EETLELAKALEDAGASALTVH 158 (231)
T ss_pred CCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc-hHHHHHHHHHHHhCCCEEEEC
Confidence 9999999999999999999999999999999999999999999999999999998653 478999999999999999999
Q ss_pred cccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhc
Q 005508 501 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 501 gRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~ 574 (693)
+|++.++|.++++|++++++++.+ ++|||+||||.|++|+.+++.. +|||+||+||++|.|||+|+++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~~~~l~~-~gad~V~igr~~l~~P~~~~~~~~~ 229 (231)
T cd02801 159 GRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDALRCLEQ-TGVDGVMIGRGALGNPWLFREIKEL 229 (231)
T ss_pred CCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHHHHHHHh-cCCCEEEEcHHhHhCCHHHHhhhhc
Confidence 999888888889999999999987 7999999999999999999986 7999999999999999999999764
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=340.04 Aligned_cols=215 Identities=21% Similarity=0.277 Sum_probs=180.3
Q ss_pred cEEEccCCCCCcHHHHH-HHHHcCCCEE------EecccccchhccCChhhh--------h---hhhccCCCCeEEEEec
Q 005508 341 KLYLAPLTTVGNLPFRR-VCKVLGADVT------CGEMAMCTNLLQGQASEW--------A---LLRRHSSEDLFGVQIC 402 (693)
Q Consensus 341 riiLAPMt~v~dlpFRr-l~~~~Gadl~------~TEM~~a~~ll~g~~~e~--------~---ll~~h~~e~p~gvQL~ 402 (693)
+++||||+++||.+||+ +|..+|++++ .++|..+..+....+.|+ . +-.....+.|+++||+
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p~~vqi~ 80 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVR 80 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCeEEEEec
Confidence 58999999999999999 7777777554 556666666555544431 0 1112334679999999
Q ss_pred CCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHH
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 403 G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~ 482 (693)
|++++.+.++|+++.+ ++|+||||||||++.+++.|+|++||++|+++.+||++|++ +++||+||||+||+ .++
T Consensus 81 g~~~~~~~~aa~~~~~--~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~---~~~ 154 (233)
T cd02911 81 SSSLEPLLNAAALVAK--NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD---VDD 154 (233)
T ss_pred CCCHHHHHHHHHHHhh--cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC---cCH
Confidence 9999999999999974 46999999999999999999999999999999999999998 59999999999985 457
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
.++++.|+++|+++|+++.+ .++ ..++|++|++++ + ++|||+||||.|++|+.++++ +|||+|||||+
T Consensus 155 ~~la~~l~~aG~d~ihv~~~--~~g--~~ad~~~I~~i~--~--~ipVIgnGgI~s~eda~~~l~--~GaD~VmiGR~-- 222 (233)
T cd02911 155 EELARLIEKAGADIIHVDAM--DPG--NHADLKKIRDIS--T--ELFIIGNNSVTTIESAKEMFS--YGADMVSVARA-- 222 (233)
T ss_pred HHHHHHHHHhCCCEEEECcC--CCC--CCCcHHHHHHhc--C--CCEEEEECCcCCHHHHHHHHH--cCCCEEEEcCC--
Confidence 89999999999998766533 222 368999999997 4 699999999999999999997 58999999999
Q ss_pred hCCCchhHHHh
Q 005508 563 IKPWIFTEIKE 573 (693)
Q Consensus 563 ~nPwiF~eIke 573 (693)
.+||+|++|++
T Consensus 223 ~~p~~~~~~~~ 233 (233)
T cd02911 223 SLPENIEWLVE 233 (233)
T ss_pred CCchHHHHhhC
Confidence 99999999863
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=312.25 Aligned_cols=231 Identities=20% Similarity=0.285 Sum_probs=192.9
Q ss_pred cccCCccccCcEEEcc-CCCCCcHHHHHHHHHcCCCEEEe---------------------cccccchhccCChhhh-hh
Q 005508 331 REKKLIDFREKLYLAP-LTTVGNLPFRRVCKVLGADVTCG---------------------EMAMCTNLLQGQASEW-AL 387 (693)
Q Consensus 331 ~ek~~l~lknriiLAP-Mt~v~dlpFRrl~~~~Gadl~~T---------------------EM~~a~~ll~g~~~e~-~l 387 (693)
.+..++.|+|++++|| |.++++.++|.+++. |+++++| +|+++..+.......| ..
T Consensus 3 ~~~~g~~l~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~ 81 (300)
T TIGR01037 3 VELFGIRFKNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEE 81 (300)
T ss_pred EEECCEECCCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHH
Confidence 3567899999999999 578899999998865 9999999 5666665555333343 23
Q ss_pred hh--ccCCCCeEEEEecCCCHHHHHHHHHHHhhhC-CCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc
Q 005508 388 LR--RHSSEDLFGVQICGAYPDTLARTVELIDQQC-TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD 464 (693)
Q Consensus 388 l~--~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~a-G~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~ 464 (693)
+. .+..+.|+++||+|+++++|.++|+.+.+.. ++|+||||||||+.+ |+|+.|+.+++++.+|+++|++.++
T Consensus 82 ~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 82 LKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred HHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcC
Confidence 32 2334569999999999999999999997322 499999999999964 6899999999999999999999999
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccc----------------cCccCCCccH----HHHHHHHHHc
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR----------------QQRYSKLADW----DYIYQCARKA 524 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr----------------~q~ytg~Adw----~~I~~i~~~~ 524 (693)
+||+||+|.+. ++..++++.++++|+|+|+||+++. .+.|++++.| ++++++++.+
T Consensus 158 ~pv~vKi~~~~----~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~ 233 (300)
T TIGR01037 158 VPVFAKLSPNV----TDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV 233 (300)
T ss_pred CCEEEECCCCh----hhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC
Confidence 99999999744 4578999999999999999996432 2356677665 7899999988
Q ss_pred CCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhc
Q 005508 525 SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 525 ~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~ 574 (693)
++|||+||||.|++|+.+++. .|||+|||||++|.+||+|.+++++
T Consensus 234 --~ipvi~~GGI~s~~da~~~l~--~GAd~V~igr~~l~~p~~~~~i~~~ 279 (300)
T TIGR01037 234 --DIPIIGVGGITSFEDALEFLM--AGASAVQVGTAVYYRGFAFKKIIEG 279 (300)
T ss_pred --CCCEEEECCCCCHHHHHHHHH--cCCCceeecHHHhcCchHHHHHHHH
Confidence 699999999999999999997 5899999999999999999998763
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=306.86 Aligned_cols=245 Identities=13% Similarity=0.087 Sum_probs=201.4
Q ss_pred cCccccCCccccCcEEEccCCC-------CCcHHHHHHHH--HcCCCEEEecccccchhccCCh-----------hhhhh
Q 005508 328 THSREKKLIDFREKLYLAPLTT-------VGNLPFRRVCK--VLGADVTCGEMAMCTNLLQGQA-----------SEWAL 387 (693)
Q Consensus 328 ~~p~ek~~l~lknriiLAPMt~-------v~dlpFRrl~~--~~Gadl~~TEM~~a~~ll~g~~-----------~e~~l 387 (693)
|.|.+++++.|+||+++|||++ .|+..++++.+ +.|+++++||.+.+.+...+.. ..|+.
T Consensus 2 f~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~ 81 (343)
T cd04734 2 LSPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRR 81 (343)
T ss_pred CCCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHH
Confidence 7899999999999999999963 24444444443 3589999999998876533321 12332
Q ss_pred h--hccCCCCeEEEEecCCC--------------------------------------HHHHHHHHHHHhhhCCCcEEEE
Q 005508 388 L--RRHSSEDLFGVQICGAY--------------------------------------PDTLARTVELIDQQCTVDFIDI 427 (693)
Q Consensus 388 l--~~h~~e~p~gvQL~G~~--------------------------------------pe~~~~AA~~~~~~aG~D~IDL 427 (693)
+ ..|..+.++++||++.. .+.|++||+++. ++|||+|||
T Consensus 82 l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~-~aGfDgVei 160 (343)
T cd04734 82 LAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQ-AGGLDGVEL 160 (343)
T ss_pred HHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEE
Confidence 2 46888899999997310 267899999998 689999999
Q ss_pred cC--C-------CCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCC------hhHHHHHHHHHHHc
Q 005508 428 NM--G-------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG------KNRIDSLIADIGTW 492 (693)
Q Consensus 428 N~--G-------CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~------~~~~~~la~~L~ea 492 (693)
|+ | ||..+.++++||++|++|.+++.+||++|+++++.+++||+|+++.+. .+++.++++.|+++
T Consensus 161 h~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~ 240 (343)
T cd04734 161 QAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAE 240 (343)
T ss_pred ccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhc
Confidence 99 5 788899999999999999999999999999999989999999987652 46789999999999
Q ss_pred C-CCEEEEecccccC----------ccC-CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 493 G-ASAVTVHGRTRQQ----------RYS-KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 493 G-~daItVHgRtr~q----------~yt-g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
| +|+|+||+++..+ .|. ...+|++++++++.+ ++|||+||+|.++++++++++. ++||+||+||+
T Consensus 241 G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~-~~~D~V~~gR~ 317 (343)
T cd04734 241 GLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAA-GHADMVGMTRA 317 (343)
T ss_pred CCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHc-CCCCeeeecHH
Confidence 8 9999997654221 122 224689999999998 7999999999999999999987 88999999999
Q ss_pred HhhCCCchhHHHhccC
Q 005508 561 ALIKPWIFTEIKEQRH 576 (693)
Q Consensus 561 aL~nPwiF~eIke~~~ 576 (693)
+|.||||++++++++.
T Consensus 318 ~ladP~l~~k~~~g~~ 333 (343)
T cd04734 318 HIADPHLVAKAREGRE 333 (343)
T ss_pred hHhCccHHHHHHcCCc
Confidence 9999999999999874
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=302.05 Aligned_cols=254 Identities=31% Similarity=0.466 Sum_probs=218.9
Q ss_pred CCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhhh---------------hhhccCCC-CeE
Q 005508 334 KLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA---------------LLRRHSSE-DLF 397 (693)
Q Consensus 334 ~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~---------------ll~~h~~e-~p~ 397 (693)
..+.+.|+++||||+++|++|.|.|+-+||||++|||-+....|+++.+.+-. +++.++.+ ..+
T Consensus 5 ~~l~y~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rl 84 (477)
T KOG2334|consen 5 SSLFYRNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRL 84 (477)
T ss_pred hhhhhcCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCeE
Confidence 45677899999999999999999999999999999999999999887654321 12333332 367
Q ss_pred EEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCC
Q 005508 398 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE 477 (693)
Q Consensus 398 gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d 477 (693)
+.|+..++++-..++|.++.+ .+.+||+|||||-.+....|+|++|+.+|+.+..|+.++.+...+|||+|||+- +
T Consensus 85 ilQ~gT~sa~lA~e~A~lv~n--DvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L--~ 160 (477)
T KOG2334|consen 85 ILQIGTASAELALEAAKLVDN--DVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLL--D 160 (477)
T ss_pred EEEecCCcHHHHHHHHHHhhc--ccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEec--C
Confidence 899999999999999999874 588999999999999999999999999999999999999999999999999973 5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCC---HHHHHHHHhcCCCcCE
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS---YLDWNKHKSDCPELAS 554 (693)
Q Consensus 478 ~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s---~eDa~~~l~~~~gaDg 554 (693)
+.++++++++++...|+.+|+||+|++..|...++.-+||+.++..++ .||||.||++.+ +.|+....+. +++|+
T Consensus 161 s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~-~V~vi~ng~~~~~e~y~Di~~~~~~-~~~~~ 238 (477)
T KOG2334|consen 161 SKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQ-MVPVIVNGGSMDIEQYSDIEDFQEK-TGADS 238 (477)
T ss_pred CcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhc-cceEeeccchhhHHhhhhHHHHHHH-hccch
Confidence 667899999999999999999999999999999999999999999996 499999999999 7777777776 89999
Q ss_pred EEEcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHH---hhcC
Q 005508 555 CMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLE---HWGS 601 (693)
Q Consensus 555 VMIGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le---~~gs 601 (693)
|||+|.+..||.+|.+ ++ ..+....++.|++++.+ |+|+
T Consensus 239 vmiAR~A~~n~SiF~~--eG------~~~~~~~~~~fl~~a~~~dn~~~n 280 (477)
T KOG2334|consen 239 VMIARAAESNPSIFRE--EG------CLSEKEVIREFLRLAVQYDNHYGN 280 (477)
T ss_pred hhhhHhhhcCCceeee--cC------CchHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999987 33 12344556677776654 5554
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=285.04 Aligned_cols=204 Identities=16% Similarity=0.184 Sum_probs=164.5
Q ss_pred CCCCCcHHHHHHHHHc--CCCEEEeccccc--------chhccCChh----------hhh--hhhccCCCCeEEEEecCC
Q 005508 347 LTTVGNLPFRRVCKVL--GADVTCGEMAMC--------TNLLQGQAS----------EWA--LLRRHSSEDLFGVQICGA 404 (693)
Q Consensus 347 Mt~v~dlpFRrl~~~~--Gadl~~TEM~~a--------~~ll~g~~~----------e~~--ll~~h~~e~p~gvQL~G~ 404 (693)
|+|.||..| |+.+ .+++++-.-... ..+....++ +|- .+..-.+..|+++||.++
T Consensus 1 mag~~d~~~---~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~~~~~vivnv~~~ 77 (231)
T TIGR00736 1 MAGITDAEF---CRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAESRALVSVNVRFV 77 (231)
T ss_pred CCCcchHHH---HHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHhhcCCEEEEEecC
Confidence 788888888 6554 367665443322 223322222 221 111123566999999999
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDS 484 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~ 484 (693)
+++.+.++|+.+.+ ++|+||||||||++++.+.|+|++||++|+++.+||+++++ .++||+||||+++.+ .++.+
T Consensus 78 ~~ee~~~~a~~v~~--~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~--~~~~~ 152 (231)
T TIGR00736 78 DLEEAYDVLLTIAE--HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIP--LDELI 152 (231)
T ss_pred CHHHHHHHHHHHhc--CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCc--chHHH
Confidence 99999999999973 79999999999999999999999999999999999999994 589999999999843 46789
Q ss_pred HHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC
Q 005508 485 LIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 564 (693)
Q Consensus 485 la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 564 (693)
+++.++++|+++|+||.+.... +.++|++|+++++.++ ++||||||||+|++|+.++++ +|||+||||||+|.+
T Consensus 153 ~a~~l~~aGad~i~Vd~~~~g~---~~a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda~e~l~--~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 153 DALNLVDDGFDGIHVDAMYPGK---PYADMDLLKILSEEFN-DKIIIGNNSIDDIESAKEMLK--AGADFVSVARAILKG 226 (231)
T ss_pred HHHHHHHcCCCEEEEeeCCCCC---chhhHHHHHHHHHhcC-CCcEEEECCcCCHHHHHHHHH--hCCCeEEEcHhhccC
Confidence 9999999999999999654321 2289999999999983 499999999999999999997 699999999999965
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=294.52 Aligned_cols=246 Identities=12% Similarity=0.079 Sum_probs=201.3
Q ss_pred CcCccccCCccccCcEEEccCCCCC---------cHHHHHHHH--HcCCCEEEecccccchhccCCh-----------hh
Q 005508 327 KTHSREKKLIDFREKLYLAPLTTVG---------NLPFRRVCK--VLGADVTCGEMAMCTNLLQGQA-----------SE 384 (693)
Q Consensus 327 ~~~p~ek~~l~lknriiLAPMt~v~---------dlpFRrl~~--~~Gadl~~TEM~~a~~ll~g~~-----------~e 384 (693)
-|+|.+++++.|+||+++|||++.. +..++++.+ +.|+++++||.+.+.+-..+.. ..
T Consensus 3 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~ 82 (337)
T PRK13523 3 LFSPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEG 82 (337)
T ss_pred CCCCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHH
Confidence 4789999999999999999997532 223333332 3589999999888775433221 12
Q ss_pred hhhh--hccCCCCeEEEEecCC-----------------------C------------HHHHHHHHHHHhhhCCCcEEEE
Q 005508 385 WALL--RRHSSEDLFGVQICGA-----------------------Y------------PDTLARTVELIDQQCTVDFIDI 427 (693)
Q Consensus 385 ~~ll--~~h~~e~p~gvQL~G~-----------------------~------------pe~~~~AA~~~~~~aG~D~IDL 427 (693)
|+.+ ..|..+.++++||.+. . .+.|++||+++. ++|||+|||
T Consensus 83 ~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~-~aGfDgVei 161 (337)
T PRK13523 83 LHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK-EAGFDVIEI 161 (337)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEE
Confidence 3222 4688889999999642 0 267999999998 689999999
Q ss_pred cCC---------CCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCC-C---CChhHHHHHHHHHHHcCC
Q 005508 428 NMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY-F---EGKNRIDSLIADIGTWGA 494 (693)
Q Consensus 428 N~G---------CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~-~---d~~~~~~~la~~L~eaG~ 494 (693)
|+| ||..|.+++.||++|++|.+++.+||++|+++++.||+|||+... . .+.+++.++++.|+++|+
T Consensus 162 h~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gv 241 (337)
T PRK13523 162 HGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGV 241 (337)
T ss_pred ccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCC
Confidence 999 899999999999999999999999999999999999999999721 1 135688999999999999
Q ss_pred CEEEEeccccc----CccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhH
Q 005508 495 SAVTVHGRTRQ----QRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 570 (693)
Q Consensus 495 daItVHgRtr~----q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~e 570 (693)
|+|+||+++.. +.|.+ .+|++++++++.+ ++|||++|+|.++++++++|+. ++||+||+||++|.||||+++
T Consensus 242 D~i~vs~g~~~~~~~~~~~~-~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~-g~~D~V~~gR~~iadP~~~~k 317 (337)
T PRK13523 242 DLIDVSSGAVVPARIDVYPG-YQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQN-NRADLIFIGRELLRNPYFPRI 317 (337)
T ss_pred CEEEeCCCCCCCCCCCCCcc-ccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHc-CCCChHHhhHHHHhCccHHHH
Confidence 99999999732 33333 3789999999988 7999999999999999999997 789999999999999999999
Q ss_pred HHhccCC
Q 005508 571 IKEQRHW 577 (693)
Q Consensus 571 Ike~~~~ 577 (693)
++++...
T Consensus 318 ~~~~~~~ 324 (337)
T PRK13523 318 AAKELGF 324 (337)
T ss_pred HHHHcCC
Confidence 9987644
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=288.65 Aligned_cols=241 Identities=12% Similarity=0.121 Sum_probs=197.4
Q ss_pred cCccccCC-ccccCcEEEccCCCC--------CcHHHHHHHHH--cCCCEEEecccccchhccCCh--------------
Q 005508 328 THSREKKL-IDFREKLYLAPLTTV--------GNLPFRRVCKV--LGADVTCGEMAMCTNLLQGQA-------------- 382 (693)
Q Consensus 328 ~~p~ek~~-l~lknriiLAPMt~v--------~dlpFRrl~~~--~Gadl~~TEM~~a~~ll~g~~-------------- 382 (693)
|+|.++++ ++|+||+++|||++. ++.-..++.++ .|+++++||.+.+.+..+...
T Consensus 2 f~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i 81 (338)
T cd04733 2 GQPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDL 81 (338)
T ss_pred CCCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHH
Confidence 78999995 999999999999652 33444444433 489999999887765432221
Q ss_pred hhhhhh--hccCCCCeEEEEecCC-----------------------------------------CHHHHHHHHHHHhhh
Q 005508 383 SEWALL--RRHSSEDLFGVQICGA-----------------------------------------YPDTLARTVELIDQQ 419 (693)
Q Consensus 383 ~e~~ll--~~h~~e~p~gvQL~G~-----------------------------------------~pe~~~~AA~~~~~~ 419 (693)
..|+.+ ..|..+.++++||++. ..+.|++||+++. +
T Consensus 82 ~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~-~ 160 (338)
T cd04733 82 EAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQ-E 160 (338)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHH-H
Confidence 122222 4688889999998741 0267899999998 7
Q ss_pred CCCcEEEEcCCC---------CCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEec------CCCCCChhHH
Q 005508 420 CTVDFIDINMGC---------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVR------TGYFEGKNRI 482 (693)
Q Consensus 420 aG~D~IDLN~GC---------P~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR------~G~~d~~~~~ 482 (693)
+|||+||||+|| |..|.+++.||++|++|++++.+||++|++++ ++||.||++ .|| +.+++
T Consensus 161 aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~--~~eea 238 (338)
T cd04733 161 AGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGF--TEEDA 238 (338)
T ss_pred cCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCC--CHHHH
Confidence 899999999997 99999999999999999999999999999998 589999997 355 35688
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCC-----------CccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCC
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSK-----------LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 551 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg-----------~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g 551 (693)
.++++.|+++|+++|+||+|+..+.+.. ...|++++++++.+ ++||+++|+|.++++++++++. +.
T Consensus 239 ~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~-g~ 315 (338)
T cd04733 239 LEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALAS-GA 315 (338)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHc-CC
Confidence 9999999999999999999986554421 11368888999998 7999999999999999999997 78
Q ss_pred cCEEEEcHHHhhCCCchhHHHhc
Q 005508 552 LASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 552 aDgVMIGRgaL~nPwiF~eIke~ 574 (693)
||+||+||++|.||||+++++++
T Consensus 316 aD~V~lgR~~iadP~~~~k~~~g 338 (338)
T cd04733 316 VDGIGLARPLALEPDLPNKLLAG 338 (338)
T ss_pred CCeeeeChHhhhCccHHHHHhcC
Confidence 99999999999999999999864
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=282.24 Aligned_cols=235 Identities=18% Similarity=0.223 Sum_probs=190.4
Q ss_pred cccCCccccCcEEEccCC-CCCcHHHHHHHHHcCCCEEEecccccc-hh-cc----------C--------C--------
Q 005508 331 REKKLIDFREKLYLAPLT-TVGNLPFRRVCKVLGADVTCGEMAMCT-NL-LQ----------G--------Q-------- 381 (693)
Q Consensus 331 ~ek~~l~lknriiLAPMt-~v~dlpFRrl~~~~Gadl~~TEM~~a~-~l-l~----------g--------~-------- 381 (693)
.+..++.|+|++++|.=+ +-+...++++. ..|++.+++..+... +- .+ + +
T Consensus 4 ~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~-~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~~~ 82 (299)
T cd02940 4 VTFCGIKFPNPFGLASAPPTTSYPMIRRAF-EAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISEKP 82 (299)
T ss_pred eEECCEEcCCCCEeCCcCCCCCHHHHHHHH-HhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccccC
Confidence 456789999999999732 22334555555 458988877766555 21 00 0 0
Q ss_pred hhhh-hhh---hccCCCCeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHH
Q 005508 382 ASEW-ALL---RRHSSEDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGII 456 (693)
Q Consensus 382 ~~e~-~ll---~~h~~e~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV 456 (693)
...| ..+ ..+..+.|+++||+|. ++++|.++|+.+. ++|+|+||||+|||+. ...+++|++|+++|+.+.+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~-~~gad~ielN~sCP~~-~~~~~~G~~l~~~~~~~~~iv 160 (299)
T cd02940 83 LEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVE-EAGADALELNFSCPHG-MPERGMGAAVGQDPELVEEIC 160 (299)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH-hcCCCEEEEECCCCCC-CCCCCCchhhccCHHHHHHHH
Confidence 0111 001 1111267999999998 9999999999997 5799999999999997 566789999999999999999
Q ss_pred HHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEE---------------------EecccccCccCCCcc--
Q 005508 457 EATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT---------------------VHGRTRQQRYSKLAD-- 513 (693)
Q Consensus 457 ~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daIt---------------------VHgRtr~q~ytg~Ad-- 513 (693)
++|++.+++||+||||.+. .+..++++.++++|+++|+ +|+|++.++|+|++.
T Consensus 161 ~~v~~~~~~Pv~vKl~~~~----~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p 236 (299)
T cd02940 161 RWVREAVKIPVIAKLTPNI----TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKP 236 (299)
T ss_pred HHHHHhcCCCeEEECCCCc----hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcch
Confidence 9999999999999999854 3578999999999999998 567888899999988
Q ss_pred --HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh-CCCchhHHHhc
Q 005508 514 --WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKEQ 574 (693)
Q Consensus 514 --w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~-nPwiF~eIke~ 574 (693)
|++|+++++.+..++||||||||.|++|+.+++. +|||+||||||++. .|.+|.+|.++
T Consensus 237 ~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~--aGA~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 237 IALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLL--LGASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHH--cCCChheEceeecccCCcHHHHHhhh
Confidence 9999999998843699999999999999999997 79999999999999 89999998763
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=281.90 Aligned_cols=244 Identities=10% Similarity=0.090 Sum_probs=198.8
Q ss_pred CcCccccCCccccCcEEEccCCCC--------CcHHHHHHHHH-cCCCEEEecccccchhccCChh-----------hhh
Q 005508 327 KTHSREKKLIDFREKLYLAPLTTV--------GNLPFRRVCKV-LGADVTCGEMAMCTNLLQGQAS-----------EWA 386 (693)
Q Consensus 327 ~~~p~ek~~l~lknriiLAPMt~v--------~dlpFRrl~~~-~Gadl~~TEM~~a~~ll~g~~~-----------e~~ 386 (693)
-|+|.+++++.|+||+++|||++. |+.-++++.+. .| ++++||.+.+.+...+... .|+
T Consensus 2 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr 80 (338)
T cd02933 2 LFSPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWK 80 (338)
T ss_pred CCCCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHHH
Confidence 378999999999999999999643 22333333332 36 9999999988765433211 122
Q ss_pred hh--hccCCCCeEEEEecCC----------------------------------C---------------HHHHHHHHHH
Q 005508 387 LL--RRHSSEDLFGVQICGA----------------------------------Y---------------PDTLARTVEL 415 (693)
Q Consensus 387 ll--~~h~~e~p~gvQL~G~----------------------------------~---------------pe~~~~AA~~ 415 (693)
.+ ..|..+.++++||.+. . .+.|++||++
T Consensus 81 ~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~ 160 (338)
T cd02933 81 KVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARN 160 (338)
T ss_pred HHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 22 4678888999998530 0 2578999999
Q ss_pred HhhhCCCcEEEEcCCC---------CCcccccCCccccccCChHHHHHHHHHhcccccc-CEEEEecCC-------CCCC
Q 005508 416 IDQQCTVDFIDINMGC---------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTG-------YFEG 478 (693)
Q Consensus 416 ~~~~aG~D~IDLN~GC---------P~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~i-PVtVKiR~G-------~~d~ 478 (693)
+. ++|||+||||+|| |..|.++|.||++|.+|.+++.+||++|+++++. ||+|||+.. +..+
T Consensus 161 a~-~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~ 239 (338)
T cd02933 161 AI-EAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP 239 (338)
T ss_pred HH-HcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCC
Confidence 98 7899999999999 9999999999999999999999999999999844 899999863 1124
Q ss_pred hhHHHHHHHHHHHcCCCEEEE-ecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 479 KNRIDSLIADIGTWGASAVTV-HGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 479 ~~~~~~la~~L~eaG~daItV-HgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
.+++.++++.|++.|+|+|+| ||++..+. ....|++++++++.+ ++|||++|+|. +++++++|+. ++||+||+
T Consensus 240 ~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~--~~~~~~~~~~ik~~~--~ipvi~~G~i~-~~~a~~~l~~-g~~D~V~~ 313 (338)
T cd02933 240 EATFSYLAKELNKRGLAYLHLVEPRVAGNP--EDQPPDFLDFLRKAF--KGPLIAAGGYD-AESAEAALAD-GKADLVAF 313 (338)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCCCcc--cccchHHHHHHHHHc--CCCEEEECCCC-HHHHHHHHHc-CCCCEEEe
Confidence 567889999999999999999 67654433 567899999999998 79999999997 9999999997 78999999
Q ss_pred cHHHhhCCCchhHHHhccCCC
Q 005508 558 ARGALIKPWIFTEIKEQRHWD 578 (693)
Q Consensus 558 GRgaL~nPwiF~eIke~~~~d 578 (693)
||++|.||||++++++++.+.
T Consensus 314 gR~~ladP~~~~k~~~g~~~~ 334 (338)
T cd02933 314 GRPFIANPDLVERLKNGAPLN 334 (338)
T ss_pred CHhhhhCcCHHHHHhcCCCCC
Confidence 999999999999999998764
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=282.28 Aligned_cols=243 Identities=14% Similarity=0.120 Sum_probs=200.8
Q ss_pred cCccccCCccccCcEEEccCCCC--------CcHHHHHHHHH--cCCCEEEecccccchhccCCh-----------hhhh
Q 005508 328 THSREKKLIDFREKLYLAPLTTV--------GNLPFRRVCKV--LGADVTCGEMAMCTNLLQGQA-----------SEWA 386 (693)
Q Consensus 328 ~~p~ek~~l~lknriiLAPMt~v--------~dlpFRrl~~~--~Gadl~~TEM~~a~~ll~g~~-----------~e~~ 386 (693)
|.|.++++++|+||+++|||++. ++..++++..+ .|+++++||.+.+.+...+.. ..|+
T Consensus 1 f~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
T cd02803 1 FSPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLR 80 (327)
T ss_pred CCCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHH
Confidence 67899999999999999999753 33444444443 589999999998877544321 2344
Q ss_pred hh--hccCCCCeEEEEecCCC--------------------------------------HHHHHHHHHHHhhhCCCcEEE
Q 005508 387 LL--RRHSSEDLFGVQICGAY--------------------------------------PDTLARTVELIDQQCTVDFID 426 (693)
Q Consensus 387 ll--~~h~~e~p~gvQL~G~~--------------------------------------pe~~~~AA~~~~~~aG~D~ID 426 (693)
.+ ..|..+.++++||++.. .+.|++||+++. ++|||+||
T Consensus 81 ~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~-~aGfDgve 159 (327)
T cd02803 81 KLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAK-EAGFDGVE 159 (327)
T ss_pred HHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 33 46778888888987310 267899999998 68999999
Q ss_pred EcCC---------CCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCC----CChhHHHHHHHHHHH
Q 005508 427 INMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYF----EGKNRIDSLIADIGT 491 (693)
Q Consensus 427 LN~G---------CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~----d~~~~~~~la~~L~e 491 (693)
||+| ||..+.+++.||++|++|++++.++|++|++++ ++||.||++.... .+.+++.++++.|++
T Consensus 160 ih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~ 239 (327)
T cd02803 160 IHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEE 239 (327)
T ss_pred EcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHH
Confidence 9998 788899999999999999999999999999998 7899999997421 135678999999999
Q ss_pred cCCCEEEEecccccCccC--------CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 492 WGASAVTVHGRTRQQRYS--------KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 492 aG~daItVHgRtr~q~yt--------g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
+|+++|+||+++..+.+. ...++++++++++.+ ++||+++|+|.+++++.++|+. ++||+||+||++|.
T Consensus 240 ~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~-g~aD~V~igR~~la 316 (327)
T cd02803 240 AGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAVGGIRDPEVAEEILAE-GKADLVALGRALLA 316 (327)
T ss_pred cCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHC-CCCCeeeecHHHHh
Confidence 999999999998654432 245788999999998 7999999999999999999986 79999999999999
Q ss_pred CCCchhHHHhc
Q 005508 564 KPWIFTEIKEQ 574 (693)
Q Consensus 564 nPwiF~eIke~ 574 (693)
||||+++++++
T Consensus 317 dP~l~~k~~~g 327 (327)
T cd02803 317 DPDLPNKAREG 327 (327)
T ss_pred CccHHHHHhcC
Confidence 99999998763
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=275.02 Aligned_cols=228 Identities=18% Similarity=0.234 Sum_probs=188.9
Q ss_pred ccCCccccCcEEEcc-CCCCCcHHHHHHHHHcCCCEEEecccccchhccCChh----------------------hh-hh
Q 005508 332 EKKLIDFREKLYLAP-LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS----------------------EW-AL 387 (693)
Q Consensus 332 ek~~l~lknriiLAP-Mt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~----------------------e~-~l 387 (693)
+..++.|+|++++|. +-+ +...||+++...|++.+++++++..+.. ++.. .| ..
T Consensus 3 ~~~G~~~~nP~~~aag~~~-~~~~~~~~~~~g~~g~v~~~ti~~~~~~-~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~ 80 (296)
T cd04740 3 ELAGLRLKNPVILASGTFG-FGEELSRVADLGKLGAIVTKSITLEPRE-GNPPPRVVETPGGMLNAIGLQNPGVEAFLEE 80 (296)
T ss_pred EECCEEcCCCCEECCCCCC-CHHHHHHHHhcCCceEEEECCcCCCCCC-CCCCCeEEecCcceeeecCCCCcCHHHHHHH
Confidence 567899999999984 223 7889999998777999999999887653 2221 11 11
Q ss_pred hh--ccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccccc
Q 005508 388 LR--RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK 465 (693)
Q Consensus 388 l~--~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~i 465 (693)
+. .+..+.|+++||+|+++++|+++|+++. ++|+|+||||++||..+ +.|+.++.+++++.+||++|++.+++
T Consensus 81 ~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~-~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 81 LLPWLREFGTPVIASIAGSTVEEFVEVAEKLA-DAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHhhcCCCcEEEEEecCCHHHHHHHHHHHH-HcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHHhccCC
Confidence 11 1335689999999999999999999997 67999999999999853 34889999999999999999999999
Q ss_pred CEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccc---------c-------CccCCCc----cHHHHHHHHHHcC
Q 005508 466 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR---------Q-------QRYSKLA----DWDYIYQCARKAS 525 (693)
Q Consensus 466 PVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr---------~-------q~ytg~A----dw~~I~~i~~~~~ 525 (693)
||+||++... ++..++++.++++|+|+|++++++. . +.|++++ .|++++++++.+
T Consensus 156 Pv~vKl~~~~----~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~- 230 (296)
T cd04740 156 PVIVKLTPNV----TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV- 230 (296)
T ss_pred CEEEEeCCCc----hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-
Confidence 9999998754 3578999999999999999865431 1 3456655 468999999988
Q ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhc
Q 005508 526 DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 526 ~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~ 574 (693)
++|||++|||.|++|+.+++. .|||+|||||+++.+||+|.+|+++
T Consensus 231 -~ipii~~GGI~~~~da~~~l~--~GAd~V~igra~l~~p~~~~~i~~~ 276 (296)
T cd04740 231 -EIPIIGVGGIASGEDALEFLM--AGASAVQVGTANFVDPEAFKEIIEG 276 (296)
T ss_pred -CCCEEEECCCCCHHHHHHHHH--cCCCEEEEchhhhcChHHHHHHHHH
Confidence 799999999999999999997 5899999999999999999999763
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=286.22 Aligned_cols=247 Identities=16% Similarity=0.106 Sum_probs=198.3
Q ss_pred cCccccCC-ccccCcEEEccCCCC--------CcHHHHHHHHHc-CCCEEEecccccchhccCC-----------hhhhh
Q 005508 328 THSREKKL-IDFREKLYLAPLTTV--------GNLPFRRVCKVL-GADVTCGEMAMCTNLLQGQ-----------ASEWA 386 (693)
Q Consensus 328 ~~p~ek~~-l~lknriiLAPMt~v--------~dlpFRrl~~~~-Gadl~~TEM~~a~~ll~g~-----------~~e~~ 386 (693)
|+|.++++ ++|+||+++|||++. |+..+.++.++. |+++++||.+.+.+...+. ...|+
T Consensus 2 f~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~ 81 (353)
T cd04735 2 FEPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGLR 81 (353)
T ss_pred CCCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHHH
Confidence 78999998 999999999999642 334444443332 6999999999887643321 12333
Q ss_pred hh--hccCCCCeEEEEecCCC----------------------------------------HHHHHHHHHHHhhhCCCcE
Q 005508 387 LL--RRHSSEDLFGVQICGAY----------------------------------------PDTLARTVELIDQQCTVDF 424 (693)
Q Consensus 387 ll--~~h~~e~p~gvQL~G~~----------------------------------------pe~~~~AA~~~~~~aG~D~ 424 (693)
-+ ..|..+..+++||++.. .+.|++||+++. ++|||+
T Consensus 82 ~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~-~aGfDg 160 (353)
T cd04735 82 KLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAI-EAGFDG 160 (353)
T ss_pred HHHHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCE
Confidence 32 46888899999996310 257899999998 699999
Q ss_pred EEEcCC---------CCCcccccCCccccccCChHHHHHHHHHhccccc----cCEEEEecCCCCC------ChhHHHHH
Q 005508 425 IDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD----KPITIKVRTGYFE------GKNRIDSL 485 (693)
Q Consensus 425 IDLN~G---------CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~----iPVtVKiR~G~~d------~~~~~~~l 485 (693)
||||+| ||..|.+++.||++|++|.+++.+||++|+++++ .++.|++|+++.+ +.+++.++
T Consensus 161 Veih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i 240 (353)
T cd04735 161 VEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLAL 240 (353)
T ss_pred EEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHH
Confidence 999986 7999999999999999999999999999999987 6788888887654 24678999
Q ss_pred HHHHHHcCCCEEEEecccc--cCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 486 IADIGTWGASAVTVHGRTR--QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr--~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
++.|+++|+|+|+||+++. ...+.....++++..+++.+..++|||+||+|+|+++++++++. |||+||+||++|.
T Consensus 241 ~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~--gaD~V~~gR~lia 318 (353)
T cd04735 241 VDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALET--GADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc--CCChHHHhHHHHh
Confidence 9999999999999998653 22333334677778887776325999999999999999999985 7999999999999
Q ss_pred CCCchhHHHhccCC
Q 005508 564 KPWIFTEIKEQRHW 577 (693)
Q Consensus 564 nPwiF~eIke~~~~ 577 (693)
||+|++++++++..
T Consensus 319 dPdl~~k~~~G~~~ 332 (353)
T cd04735 319 DPDWVEKIKEGRED 332 (353)
T ss_pred CccHHHHHHcCChh
Confidence 99999999998654
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=284.16 Aligned_cols=247 Identities=13% Similarity=0.124 Sum_probs=196.9
Q ss_pred cCccccCCccccCcEEEccCCC--C-------CcHHHHHHHH--HcCCCEEEecccccchhccC----C-----------
Q 005508 328 THSREKKLIDFREKLYLAPLTT--V-------GNLPFRRVCK--VLGADVTCGEMAMCTNLLQG----Q----------- 381 (693)
Q Consensus 328 ~~p~ek~~l~lknriiLAPMt~--v-------~dlpFRrl~~--~~Gadl~~TEM~~a~~ll~g----~----------- 381 (693)
|+|.++++++|+||+++|||++ . |+....++.. +.|+++++||.+.+.+...+ .
T Consensus 2 f~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 81 (382)
T cd02931 2 FEPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAF 81 (382)
T ss_pred CCCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHH
Confidence 7899999999999999999964 2 1223333322 35899999998877653211 1
Q ss_pred hhhhhhh--hccCCCCeEEEEecCC----------------------------C-------------HHHHHHHHHHHhh
Q 005508 382 ASEWALL--RRHSSEDLFGVQICGA----------------------------Y-------------PDTLARTVELIDQ 418 (693)
Q Consensus 382 ~~e~~ll--~~h~~e~p~gvQL~G~----------------------------~-------------pe~~~~AA~~~~~ 418 (693)
...|+-+ ..|..+.++++||++. . .+.|++||+++.
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~- 160 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAK- 160 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-
Confidence 0123322 4688899999999632 0 257899999998
Q ss_pred hCCCcEEEEcC---CC-------CCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecC-----CCCC----
Q 005508 419 QCTVDFIDINM---GC-------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT-----GYFE---- 477 (693)
Q Consensus 419 ~aG~D~IDLN~---GC-------P~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~-----G~~d---- 477 (693)
++|||+||||+ || |..|.++|.||++|++|++++.+||++|++++ ++||+|||+. ++..
T Consensus 161 ~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~ 240 (382)
T cd02931 161 EAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALP 240 (382)
T ss_pred HcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccccc
Confidence 69999999998 87 77889999999999999999999999999998 6799999995 1111
Q ss_pred ---------ChhHHHHHHHHHHHcCCCEEEEecccccCcc-------CCCc-cHHHHHHHHHHcCCCceEEEeCCCCCHH
Q 005508 478 ---------GKNRIDSLIADIGTWGASAVTVHGRTRQQRY-------SKLA-DWDYIYQCARKASDDLQVLGNGDIYSYL 540 (693)
Q Consensus 478 ---------~~~~~~~la~~L~eaG~daItVHgRtr~q~y-------tg~A-dw~~I~~i~~~~~~~IPVIgNGdI~s~e 540 (693)
+.+++.+++++|+++|+|+|+||+++..+.+ .+.. .|++++++++.+ ++|||+||+|.+++
T Consensus 241 ~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~ 318 (382)
T cd02931 241 GEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPE 318 (382)
T ss_pred ccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHH
Confidence 2467889999999999999999999854422 1222 367889999998 79999999999999
Q ss_pred HHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCC
Q 005508 541 DWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWD 578 (693)
Q Consensus 541 Da~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d 578 (693)
+++++|+. ++||+||+||++|.||||++++++++..+
T Consensus 319 ~~~~~l~~-g~~D~V~~gR~~ladP~l~~k~~~g~~~~ 355 (382)
T cd02931 319 LASEAINE-GIADMISLGRPLLADPDVVNKIRRGRFKN 355 (382)
T ss_pred HHHHHHHc-CCCCeeeechHhHhCccHHHHHHcCCccc
Confidence 99999997 78999999999999999999999987543
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=279.39 Aligned_cols=247 Identities=13% Similarity=0.077 Sum_probs=197.0
Q ss_pred cCccccCCccccCcEEEccCCC-C------CcHHHHHHHHH--cCCCEEEecccccchhccCCh-----------hhhhh
Q 005508 328 THSREKKLIDFREKLYLAPLTT-V------GNLPFRRVCKV--LGADVTCGEMAMCTNLLQGQA-----------SEWAL 387 (693)
Q Consensus 328 ~~p~ek~~l~lknriiLAPMt~-v------~dlpFRrl~~~--~Gadl~~TEM~~a~~ll~g~~-----------~e~~l 387 (693)
|+|.++++++|+||+++|||+. . ++.-++++.+. .|+++++||.+.+.+...+.. ..|+.
T Consensus 2 f~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~ 81 (353)
T cd02930 2 LSPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRL 81 (353)
T ss_pred CCCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHH
Confidence 7899999999999999999973 2 33444444433 589999999988765432221 12332
Q ss_pred h--hccCCCCeEEEEecCC----------------------------------CHHHHHHHHHHHhhhCCCcEEEEcCC-
Q 005508 388 L--RRHSSEDLFGVQICGA----------------------------------YPDTLARTVELIDQQCTVDFIDINMG- 430 (693)
Q Consensus 388 l--~~h~~e~p~gvQL~G~----------------------------------~pe~~~~AA~~~~~~aG~D~IDLN~G- 430 (693)
+ ..|..+.++++||++. -++.|++||+++. ++|||+||||.+
T Consensus 82 l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~-~aGfDgVeih~ah 160 (353)
T cd02930 82 ITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAR-EAGYDGVEIMGSE 160 (353)
T ss_pred HHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEeccc
Confidence 2 4688899999999531 0368999999998 689999999865
Q ss_pred --------CCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCC------ChhHHHHHHHHHHHcCCCE
Q 005508 431 --------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE------GKNRIDSLIADIGTWGASA 496 (693)
Q Consensus 431 --------CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d------~~~~~~~la~~L~eaG~da 496 (693)
||..+.+++.||++|++|++++.+||++|+++++.++.|++|+++.| +.+++.++++.|+++|+|+
T Consensus 161 GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~ 240 (353)
T cd02930 161 GYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADI 240 (353)
T ss_pred chHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999977777777877543 4467899999999999999
Q ss_pred EEEecc-----ccc-CccCCCccH-HHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchh
Q 005508 497 VTVHGR-----TRQ-QRYSKLADW-DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 569 (693)
Q Consensus 497 ItVHgR-----tr~-q~ytg~Adw-~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~ 569 (693)
|+|... +.. +.+.+.+.| ++++++++.+ ++||+++|+|+++++++++++. +++|+||+||++|.||||++
T Consensus 241 i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~-g~~D~V~~gR~~l~dP~~~~ 317 (353)
T cd02930 241 LNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLAD-GDADMVSMARPFLADPDFVA 317 (353)
T ss_pred EEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHC-CCCChhHhhHHHHHCccHHH
Confidence 999533 221 223333444 4567899988 7999999999999999999997 78999999999999999999
Q ss_pred HHHhccCCC
Q 005508 570 EIKEQRHWD 578 (693)
Q Consensus 570 eIke~~~~d 578 (693)
++++++.-+
T Consensus 318 k~~~g~~~~ 326 (353)
T cd02930 318 KAAAGRADE 326 (353)
T ss_pred HHHhCCccc
Confidence 999987533
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=277.85 Aligned_cols=246 Identities=14% Similarity=0.080 Sum_probs=195.1
Q ss_pred CCcCccccCCccccCcEEEccCCCCC----cHHHHHHH---HHcCCCEEEecccccchhccCC----h--------hhhh
Q 005508 326 LKTHSREKKLIDFREKLYLAPLTTVG----NLPFRRVC---KVLGADVTCGEMAMCTNLLQGQ----A--------SEWA 386 (693)
Q Consensus 326 ~~~~p~ek~~l~lknriiLAPMt~v~----dlpFRrl~---~~~Gadl~~TEM~~a~~ll~g~----~--------~e~~ 386 (693)
.-|+|.++++++|+||+++|||++.. ...+..+. .+.|++|++||.+.+.+-..+. . ..|+
T Consensus 7 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~ 86 (370)
T cd02929 7 ILFEPIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLA 86 (370)
T ss_pred ccCCCccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHHHHH
Confidence 36899999999999999999996532 12221111 2358999999988877543321 1 1233
Q ss_pred hh--hccCCCCeEEEEecCC-----------------------------C------------HHHHHHHHHHHhhhCCCc
Q 005508 387 LL--RRHSSEDLFGVQICGA-----------------------------Y------------PDTLARTVELIDQQCTVD 423 (693)
Q Consensus 387 ll--~~h~~e~p~gvQL~G~-----------------------------~------------pe~~~~AA~~~~~~aG~D 423 (693)
.+ ..|..+.++++||++. . .+.|++||+++. ++|||
T Consensus 87 ~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~-~aGfD 165 (370)
T cd02929 87 AMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRAR-DAGFD 165 (370)
T ss_pred HHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCC
Confidence 22 4688888999999531 0 257899999998 68999
Q ss_pred EEEEcCCC---------CCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCC--------ChhHHHHHH
Q 005508 424 FIDINMGC---------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE--------GKNRIDSLI 486 (693)
Q Consensus 424 ~IDLN~GC---------P~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d--------~~~~~~~la 486 (693)
+||||+|| |..|.++|.||++|++|.+++.+||++|+++++.++.|++|++..+ +.+++.+++
T Consensus 166 gVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~ 245 (370)
T cd02929 166 IVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFV 245 (370)
T ss_pred EEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHH
Confidence 99999999 9999999999999999999999999999999977777888876543 245778999
Q ss_pred HHHHHcCCCEEEEeccccc------CccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 487 ADIGTWGASAVTVHGRTRQ------QRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 487 ~~L~eaG~daItVHgRtr~------q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+.|++. +|+|.|+..... +.+.....|++++++++.+ ++|||++|+|.++++++++|+. ++||+||+||+
T Consensus 246 ~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~-g~~D~V~~gR~ 321 (370)
T cd02929 246 EMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKS-GILDLIGAARP 321 (370)
T ss_pred HHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHc-CCCCeeeechH
Confidence 999876 899999765321 1122334688899999988 7999999999999999999997 78999999999
Q ss_pred HhhCCCchhHHHhccC
Q 005508 561 ALIKPWIFTEIKEQRH 576 (693)
Q Consensus 561 aL~nPwiF~eIke~~~ 576 (693)
+|.||||++++++++.
T Consensus 322 ~ladP~l~~k~~~g~~ 337 (370)
T cd02929 322 SIADPFLPKKIREGRI 337 (370)
T ss_pred hhhCchHHHHHHcCCc
Confidence 9999999999999864
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=275.32 Aligned_cols=244 Identities=14% Similarity=0.165 Sum_probs=196.4
Q ss_pred cCccccCCccccCcEEEccCCCC-------CcHHHHHHHHH--cCCCEEEecccccchhccC----Ch--------hhhh
Q 005508 328 THSREKKLIDFREKLYLAPLTTV-------GNLPFRRVCKV--LGADVTCGEMAMCTNLLQG----QA--------SEWA 386 (693)
Q Consensus 328 ~~p~ek~~l~lknriiLAPMt~v-------~dlpFRrl~~~--~Gadl~~TEM~~a~~ll~g----~~--------~e~~ 386 (693)
|+|.+++++.|+||++++||++. |+..+.++.++ .|+++++||.+.+...... .. ..|+
T Consensus 2 f~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~ 81 (361)
T cd04747 2 FTPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWK 81 (361)
T ss_pred CCCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHH
Confidence 68999999999999999999743 34444444333 5899999998877532211 11 1222
Q ss_pred hh--hccCCCCeEEEEecCCC----------------------------------------HHHHHHHHHHHhhhCCCcE
Q 005508 387 LL--RRHSSEDLFGVQICGAY----------------------------------------PDTLARTVELIDQQCTVDF 424 (693)
Q Consensus 387 ll--~~h~~e~p~gvQL~G~~----------------------------------------pe~~~~AA~~~~~~aG~D~ 424 (693)
.+ ..|..+.++++||++.. .+.|++||+++. .+|||+
T Consensus 82 ~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~-~aGfDg 160 (361)
T cd04747 82 KVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADAR-RLGFDG 160 (361)
T ss_pred HHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCE
Confidence 22 36888999999995310 247899999998 689999
Q ss_pred EEEcCCC---------CCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCC---------CChhHHHH
Q 005508 425 IDINMGC---------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYF---------EGKNRIDS 484 (693)
Q Consensus 425 IDLN~GC---------P~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~---------d~~~~~~~ 484 (693)
||||++| |..|.++++||++|.+|.+++.+||++|++++ ++||.|||+. |. .+.+++..
T Consensus 161 Veih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~-~~~~~~~~~~g~~~~e~~~ 239 (361)
T cd04747 161 IELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ-WKQQDYTARLADTPDELEA 239 (361)
T ss_pred EEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc-ccccccccCCCCCHHHHHH
Confidence 9999999 99999999999999999999999999999998 6899999984 21 23457889
Q ss_pred HHHHHHHcCCCEEEEeccc-ccCccCCCccHHHHHHHHHHcCCCceEEEeCCC------------------CCHHHHHHH
Q 005508 485 LIADIGTWGASAVTVHGRT-RQQRYSKLADWDYIYQCARKASDDLQVLGNGDI------------------YSYLDWNKH 545 (693)
Q Consensus 485 la~~L~eaG~daItVHgRt-r~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI------------------~s~eDa~~~ 545 (693)
+++.|++.|+|+|+|..+. -.+.|.+ .+|.++..+++.+ ++||+++|+| .|+++++++
T Consensus 240 ~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~~~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~ 316 (361)
T cd04747 240 LLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLAGWTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLER 316 (361)
T ss_pred HHHHHHHcCCCEEEecCCCccCCCcCc-cchhHHHHHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHH
Confidence 9999999999998886653 2344543 4788889999988 6999999999 699999999
Q ss_pred HhcCCCcCEEEEcHHHhhCCCchhHHHhccCC
Q 005508 546 KSDCPELASCMIARGALIKPWIFTEIKEQRHW 577 (693)
Q Consensus 546 l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~ 577 (693)
|+. ++||+||+||++|.||||++++++++.-
T Consensus 317 l~~-g~~D~V~~gR~~iadP~~~~k~~~g~~~ 347 (361)
T cd04747 317 LER-GEFDLVAVGRALLSDPAWVAKVREGRLD 347 (361)
T ss_pred HHC-CCCCeehhhHHHHhCcHHHHHHHcCCcc
Confidence 987 7899999999999999999999998753
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=272.92 Aligned_cols=240 Identities=13% Similarity=0.159 Sum_probs=193.9
Q ss_pred cCccccCCccccCcEEEccCCCC-------CcHHHHHHHH--HcCCCEEEecccccchhccCCh-----------hhhhh
Q 005508 328 THSREKKLIDFREKLYLAPLTTV-------GNLPFRRVCK--VLGADVTCGEMAMCTNLLQGQA-----------SEWAL 387 (693)
Q Consensus 328 ~~p~ek~~l~lknriiLAPMt~v-------~dlpFRrl~~--~~Gadl~~TEM~~a~~ll~g~~-----------~e~~l 387 (693)
|.|.+++++.|+||+++|||++. ++..+.++.+ +.|+++++||.+.+.+..++.+ ..|+.
T Consensus 2 f~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~ 81 (336)
T cd02932 2 FTPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKR 81 (336)
T ss_pred CCCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHH
Confidence 68999999999999999999752 2233333333 3589999999988876533321 12332
Q ss_pred h--hccCCCCeEEEEecCC---------------------------------------------------CHHHHHHHHH
Q 005508 388 L--RRHSSEDLFGVQICGA---------------------------------------------------YPDTLARTVE 414 (693)
Q Consensus 388 l--~~h~~e~p~gvQL~G~---------------------------------------------------~pe~~~~AA~ 414 (693)
+ ..|..+..+++||++. -.+.|++||+
T Consensus 82 l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~ 161 (336)
T cd02932 82 IVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAAR 161 (336)
T ss_pred HHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 2 3678888999998531 0267899999
Q ss_pred HHhhhCCCcEEEEcCCC---------CCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecC------CCCC
Q 005508 415 LIDQQCTVDFIDINMGC---------PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT------GYFE 477 (693)
Q Consensus 415 ~~~~~aG~D~IDLN~GC---------P~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~------G~~d 477 (693)
++. ++|||+||||+|| |..+.++++||++|++|++++.+||++|++++ ++||.||++. |+
T Consensus 162 ~a~-~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~-- 238 (336)
T cd02932 162 RAV-EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGW-- 238 (336)
T ss_pred HHH-HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCC--
Confidence 998 6899999999997 88999999999999999999999999999999 7899999994 33
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecc--cccCccCC--CccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHGR--TRQQRYSK--LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 478 ~~~~~~~la~~L~eaG~daItVHgR--tr~q~ytg--~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 553 (693)
+.+++.++++.|++.|+++|+||.. +..+.+.. ..++++++++++.+ ++||+++|+|.++++++++|+. +.||
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~G~i~t~~~a~~~l~~-g~aD 315 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA--GIPVIAVGLITDPEQAEAILES-GRAD 315 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHc-CCCC
Confidence 3567899999999999999999854 44443322 23568889999988 7999999999999999999987 6799
Q ss_pred EEEEcHHHhhCCCchhHHHh
Q 005508 554 SCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 554 gVMIGRgaL~nPwiF~eIke 573 (693)
+||+||++|.||+|++++.+
T Consensus 316 ~V~~gR~~i~dP~~~~k~~~ 335 (336)
T cd02932 316 LVALGRELLRNPYWPLHAAA 335 (336)
T ss_pred eehhhHHHHhCccHHHHHhh
Confidence 99999999999999998764
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=261.47 Aligned_cols=229 Identities=17% Similarity=0.238 Sum_probs=182.2
Q ss_pred cccCCccccCcEEEcc-CCCCCcHHHHHHHHHcCCCEEEecccccchhccCC----------------------hhhhh-
Q 005508 331 REKKLIDFREKLYLAP-LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ----------------------ASEWA- 386 (693)
Q Consensus 331 ~ek~~l~lknriiLAP-Mt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~----------------------~~e~~- 386 (693)
.+..++.|+|++++|. +.+.+. .+.+.+...|++.+++..+...+-. |+ ...|.
T Consensus 4 ~~~~G~~~~nPv~~aag~~~~~~-~~~~~~~~~g~g~v~~kti~~~~~~-g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~ 81 (301)
T PRK07259 4 VELPGLKLKNPVMPASGTFGFGG-EYARFYDLNGLGAIVTKSTTLEPRE-GNPTPRIAETPGGMLNAIGLQNPGVDAFIE 81 (301)
T ss_pred eEECCEECCCCcEECCcCCCCCH-HHHHHhhhcCCcEEEeCCCCCCCCC-CCCCCcEEecCCceeecCCCCCcCHHHHHH
Confidence 4677899999999986 344333 4555556789999888777654321 11 11221
Q ss_pred hhh--ccCCCCeEEEEecCCCHHHHHHHHHHHhhhCC-CcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc
Q 005508 387 LLR--RHSSEDLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 463 (693)
Q Consensus 387 ll~--~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG-~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v 463 (693)
.+. ....+.|+++||+|+++++|+++|++++ ++| +|+||||++||+.. +.|..++++++++.+||++|++.+
T Consensus 82 ~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~-~aG~~D~iElN~~cP~~~----~gg~~~~~~~~~~~eiv~~vr~~~ 156 (301)
T PRK07259 82 EELPWLEEFDTPIIANVAGSTEEEYAEVAEKLS-KAPNVDAIELNISCPNVK----HGGMAFGTDPELAYEVVKAVKEVV 156 (301)
T ss_pred HHHHHHhccCCcEEEEeccCCHHHHHHHHHHHh-ccCCcCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhc
Confidence 111 1233679999999999999999999997 688 99999999999842 237889999999999999999999
Q ss_pred ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEeccccc----------------CccCCC----ccHHHHHHHHHH
Q 005508 464 DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ----------------QRYSKL----ADWDYIYQCARK 523 (693)
Q Consensus 464 ~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~----------------q~ytg~----Adw~~I~~i~~~ 523 (693)
++||+||++... ++..++++.|+++|+|+|++++++.. +.++++ ..|++++++++.
T Consensus 157 ~~pv~vKl~~~~----~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~ 232 (301)
T PRK07259 157 KVPVIVKLTPNV----TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQA 232 (301)
T ss_pred CCCEEEEcCCCc----hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHh
Confidence 999999999743 36789999999999999998764321 224443 368999999998
Q ss_pred cCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhc
Q 005508 524 ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 524 ~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~ 574 (693)
+ ++|||++|||.|++|+.+++. .|||+|||||+++.+||+|.+++++
T Consensus 233 ~--~ipvi~~GGI~~~~da~~~l~--aGAd~V~igr~ll~~P~~~~~i~~~ 279 (301)
T PRK07259 233 V--DIPIIGMGGISSAEDAIEFIM--AGASAVQVGTANFYDPYAFPKIIEG 279 (301)
T ss_pred C--CCCEEEECCCCCHHHHHHHHH--cCCCceeEcHHHhcCcHHHHHHHHH
Confidence 8 799999999999999999997 5899999999999999999999763
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=269.68 Aligned_cols=234 Identities=17% Similarity=0.185 Sum_probs=186.9
Q ss_pred ccccCCccccCcEEEcc--CCCCCcHHHHHHHHHcCCCEEEecccccchhccCC-h------------------------
Q 005508 330 SREKKLIDFREKLYLAP--LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ-A------------------------ 382 (693)
Q Consensus 330 p~ek~~l~lknriiLAP--Mt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~-~------------------------ 382 (693)
+.+..++.|+|++++|- +++ ++.-.+++.. .|++.+++..+. ....+-. +
T Consensus 5 ~~~~~Gl~l~nPv~~aag~~~~-~~~~~~~~~~-~g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~ 81 (420)
T PRK08318 5 SITFCGIKSPNPFWLASAPPTN-KYYNVARAFE-AGWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDR 81 (420)
T ss_pred eEEECCEecCCCcEeCCcCCCC-CHHHHHHHHH-hCCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCccccccc
Confidence 34677999999999994 443 3344455554 688877666554 2111100 0
Q ss_pred --hhh-h---hhhccCCCCeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHH
Q 005508 383 --SEW-A---LLRRHSSEDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455 (693)
Q Consensus 383 --~e~-~---ll~~h~~e~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eI 455 (693)
..| . .+..+..+.|+++||+|. +++.|+++|+.++ ++|+|+||||+|||+ .+..+++|++|+++|+.+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~-~~g~d~ielN~scP~-~~~~~~~g~~~~~~~~~~~~i 159 (420)
T PRK08318 82 PLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVE-ETGADGIELNFGCPH-GMSERGMGSAVGQVPELVEMY 159 (420)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCC-CccccCCcccccCCHHHHHHH
Confidence 111 0 111222357899999999 9999999999997 679999999999999 455678999999999999999
Q ss_pred HHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEE---------------------EecccccCccCCCc--
Q 005508 456 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT---------------------VHGRTRQQRYSKLA-- 512 (693)
Q Consensus 456 V~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daIt---------------------VHgRtr~q~ytg~A-- 512 (693)
+++|++.+++||+||||... .+...+++.++++|+++|+ +|+|+..++|+|++
T Consensus 160 ~~~v~~~~~~Pv~vKl~p~~----~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~ 235 (420)
T PRK08318 160 TRWVKRGSRLPVIVKLTPNI----TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVK 235 (420)
T ss_pred HHHHHhccCCcEEEEcCCCc----ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhh
Confidence 99999999999999999854 3378899999999999999 57788889999988
Q ss_pred --cHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh-CCCchhHHHhc
Q 005508 513 --DWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKEQ 574 (693)
Q Consensus 513 --dw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~-nPwiF~eIke~ 574 (693)
.|++|+++++.+. .+|||||||||+|++|+.++|. +|||+||||||++. .|+++.+|..+
T Consensus 236 p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~--aGA~~Vqi~ta~~~~gp~ii~~I~~~ 299 (420)
T PRK08318 236 PIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFIL--LGAGTVQVCTAAMQYGFRIVEDMISG 299 (420)
T ss_pred HHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHH--hCCChheeeeeeccCCchhHHHHHHH
Confidence 4999999999862 1599999999999999999997 79999999999999 79999999764
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=289.54 Aligned_cols=245 Identities=14% Similarity=0.263 Sum_probs=194.0
Q ss_pred CCCcCccccCCccccCcEEEccCCCCC-------cHHHHHHHH--HcCCCEEEecccccchhccCChh-----------h
Q 005508 325 SLKTHSREKKLIDFREKLYLAPLTTVG-------NLPFRRVCK--VLGADVTCGEMAMCTNLLQGQAS-----------E 384 (693)
Q Consensus 325 ~~~~~p~ek~~l~lknriiLAPMt~v~-------dlpFRrl~~--~~Gadl~~TEM~~a~~ll~g~~~-----------e 384 (693)
..-|+|++++++.|+||++++||+++. +....++.. ..|+++++||.+.+.+..++... .
T Consensus 397 ~~Lf~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~ 476 (765)
T PRK08255 397 PPMFTPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAA 476 (765)
T ss_pred ccccCccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHH
Confidence 357999999999999999999997643 222222222 35899999999988775443211 2
Q ss_pred hhhh--hccCC-CCeEEEEecCC-------------------------------------C------------HHHHHHH
Q 005508 385 WALL--RRHSS-EDLFGVQICGA-------------------------------------Y------------PDTLART 412 (693)
Q Consensus 385 ~~ll--~~h~~-e~p~gvQL~G~-------------------------------------~------------pe~~~~A 412 (693)
|+.+ ..|.. +.++++||++. . .+.|++|
T Consensus 477 ~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~a 556 (765)
T PRK08255 477 WKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAA 556 (765)
T ss_pred HHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 3222 36777 58999998520 0 2578999
Q ss_pred HHHHhhhCCCcEEEEcCC---------CCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecC-CCCC---
Q 005508 413 VELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT-GYFE--- 477 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~G---------CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~-G~~d--- 477 (693)
|+++. ++|||+||||+| ||..|.+++.||++|++|.+++.+||++|++++ ++||+|||+. +|.+
T Consensus 557 A~~a~-~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~ 635 (765)
T PRK08255 557 ARRAA-EAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGN 635 (765)
T ss_pred HHHHH-HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCC
Confidence 99998 689999999999 999999999999999999999999999999998 6899999996 3433
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEec-ccccCc---cCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHG-RTRQQR---YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 478 ~~~~~~~la~~L~eaG~daItVHg-Rtr~q~---ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 553 (693)
+.+++.++++.|+++|+|+|+||+ ++..+. +.......+..++++.+ ++|||+||+|.++++++++|+. ++||
T Consensus 636 ~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pv~~~G~i~~~~~a~~~l~~-g~~D 712 (765)
T PRK08255 636 TPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEA--GIATIAVGAISEADHVNSIIAA-GRAD 712 (765)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHc--CCEEEEeCCCCCHHHHHHHHHc-CCcc
Confidence 246788999999999999999994 443221 11122356778899988 7999999999999999999997 8899
Q ss_pred EEEEcHHHhhCC-CchhHHHh
Q 005508 554 SCMIARGALIKP-WIFTEIKE 573 (693)
Q Consensus 554 gVMIGRgaL~nP-wiF~eIke 573 (693)
+||+||++|.|| |++..+.+
T Consensus 713 ~v~~gR~~l~dP~~~~~~~~~ 733 (765)
T PRK08255 713 LCALARPHLADPAWTLHEAAE 733 (765)
T ss_pred eeeEcHHHHhCccHHHHHHHH
Confidence 999999999999 66666554
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-28 Score=253.70 Aligned_cols=231 Identities=14% Similarity=0.160 Sum_probs=184.6
Q ss_pred cCCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhcc-C-------C----------------------h
Q 005508 333 KKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQ-G-------Q----------------------A 382 (693)
Q Consensus 333 k~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~-g-------~----------------------~ 382 (693)
..++.|+|++++|-.....+..+-+.+...|++.+++..+...+... . . .
T Consensus 3 ~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~ 82 (289)
T cd02810 3 FLGLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGL 82 (289)
T ss_pred ECCEECCCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCH
Confidence 46799999999997766566666666667899988887766553210 0 0 0
Q ss_pred hhhh-hh-hc-cC-CCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHH
Q 005508 383 SEWA-LL-RR-HS-SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 458 (693)
Q Consensus 383 ~e~~-ll-~~-h~-~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~a 458 (693)
..|. .+ .. +. .+.|+++||+|++++++.++|+++. ++|+|+||||++||... .|..|+++++.+.+|+++
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~-~~G~d~ielN~~cP~~~-----~~~~~~~~~~~~~eiv~~ 156 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIE-RAGAKALELNLSCPNVG-----GGRQLGQDPEAVANLLKA 156 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHH-HhCCCEEEEEcCCCCCC-----CCcccccCHHHHHHHHHH
Confidence 1111 11 11 22 4789999999999999999999998 57999999999999853 245588999999999999
Q ss_pred hccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEeccccc----------------CccCCC----ccHHHHH
Q 005508 459 TSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ----------------QRYSKL----ADWDYIY 518 (693)
Q Consensus 459 v~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~----------------q~ytg~----Adw~~I~ 518 (693)
|++.+++||+||++.+++ .++..++++.+.++|+|+|++|+++.. ..+++. ..|++++
T Consensus 157 vr~~~~~pv~vKl~~~~~--~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~ 234 (289)
T cd02810 157 VKAAVDIPLLVKLSPYFD--LEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVA 234 (289)
T ss_pred HHHccCCCEEEEeCCCCC--HHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHH
Confidence 999999999999999763 456889999999999999999988532 122332 2588999
Q ss_pred HHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC-CCchhHHHh
Q 005508 519 QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKE 573 (693)
Q Consensus 519 ~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-PwiF~eIke 573 (693)
++++.++.++|||++|||.|++|+.+++. .|||+|||||+++.| ||+|.+|++
T Consensus 235 ~i~~~~~~~ipiia~GGI~~~~da~~~l~--~GAd~V~vg~a~~~~GP~~~~~i~~ 288 (289)
T cd02810 235 RLAARLQLDIPIIGVGGIDSGEDVLEMLM--AGASAVQVATALMWDGPDVIRKIKK 288 (289)
T ss_pred HHHHhcCCCCCEEEECCCCCHHHHHHHHH--cCccHheEcHHHHhcCccHHHHHhc
Confidence 99998843599999999999999999997 589999999999999 999999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=247.28 Aligned_cols=231 Identities=13% Similarity=0.136 Sum_probs=175.2
Q ss_pred cCCccccCcEEEccCC-CCCcHHHHHHHHHcCCCEEEecccccchhcc-----------------C----Chhhhh-hhh
Q 005508 333 KKLIDFREKLYLAPLT-TVGNLPFRRVCKVLGADVTCGEMAMCTNLLQ-----------------G----QASEWA-LLR 389 (693)
Q Consensus 333 k~~l~lknriiLAPMt-~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~-----------------g----~~~e~~-ll~ 389 (693)
..+++|+|++++|.=. +-+-...+++.. .|++.+++..+.-.+... | ....|. .++
T Consensus 3 ~~Gl~l~nPi~~Asg~~~~~~e~~~~~~~-~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~ 81 (294)
T cd04741 3 PPGLTISPPLMNAAGPWCTTLEDLLELAA-SSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIR 81 (294)
T ss_pred cCCeeCCCCCEECCCCCCCCHHHHHHHHH-cCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHH
Confidence 4689999999999655 333345666654 799888776665443210 0 011221 121
Q ss_pred -c----cCCCCeEEEEecCCCHHHHHHHHHHHhhhC--CCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccc
Q 005508 390 -R----HSSEDLFGVQICGAYPDTLARTVELIDQQC--TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT 462 (693)
Q Consensus 390 -~----h~~e~p~gvQL~G~~pe~~~~AA~~~~~~a--G~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~ 462 (693)
. +..+.|+++||+|+ +++|.++++.+.+.. ++|+||||++||+. .| +..+..+++.+.+|+++|++.
T Consensus 82 ~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~----~~-~~~~~~~~~~~~~i~~~v~~~ 155 (294)
T cd04741 82 TISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNV----PG-KPPPAYDFDATLEYLTAVKAA 155 (294)
T ss_pred HHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCC----CC-cccccCCHHHHHHHHHHHHHh
Confidence 1 12468999999999 999999999887444 79999999999984 22 235778999999999999999
Q ss_pred cccCEEEEecCCCCCChhHHHHHHHHHHHc--CCCEEEE----------ec-ccc-----cCccCCC---c----cHHHH
Q 005508 463 VDKPITIKVRTGYFEGKNRIDSLIADIGTW--GASAVTV----------HG-RTR-----QQRYSKL---A----DWDYI 517 (693)
Q Consensus 463 v~iPVtVKiR~G~~d~~~~~~~la~~L~ea--G~daItV----------Hg-Rtr-----~q~ytg~---A----dw~~I 517 (693)
+++||+||||++++ ...+.+++..+.++ |+++|++ |. |++ .+.|.+. + .|.+|
T Consensus 156 ~~iPv~vKl~p~~~--~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v 233 (294)
T cd04741 156 YSIPVGVKTPPYTD--PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNV 233 (294)
T ss_pred cCCCEEEEeCCCCC--HHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHH
Confidence 99999999999873 34577899999888 9999995 43 322 2334332 2 46777
Q ss_pred HHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh-CCCchhHHHhc
Q 005508 518 YQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKEQ 574 (693)
Q Consensus 518 ~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~-nPwiF~eIke~ 574 (693)
+++++.++.++||||||||.|++|+.+++. +|||+|||||+++. +||+|.+|.++
T Consensus 234 ~~~~~~~~~~ipIig~GGI~s~~da~e~l~--aGA~~Vqv~ta~~~~gp~~~~~i~~~ 289 (294)
T cd04741 234 RTFRRLLPSEIQIIGVGGVLDGRGAFRMRL--AGASAVQVGTALGKEGPKVFARIEKE 289 (294)
T ss_pred HHHHHhcCCCCCEEEeCCCCCHHHHHHHHH--cCCCceeEchhhhhcCchHHHHHHHH
Confidence 888888843599999999999999999997 69999999999996 99999999763
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-27 Score=253.89 Aligned_cols=248 Identities=15% Similarity=0.143 Sum_probs=198.4
Q ss_pred CCcCccccCCccccCcEEEccCCCCC--------cHHHHHHHHH--cCCCEEEecccccchhccCCh-----------hh
Q 005508 326 LKTHSREKKLIDFREKLYLAPLTTVG--------NLPFRRVCKV--LGADVTCGEMAMCTNLLQGQA-----------SE 384 (693)
Q Consensus 326 ~~~~p~ek~~l~lknriiLAPMt~v~--------dlpFRrl~~~--~Gadl~~TEM~~a~~ll~g~~-----------~e 384 (693)
.-|.|.+++++.|+||++||||++.. +...+++..+ .|+++++||++.+.+-.++.. ..
T Consensus 5 ~LF~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~ 84 (363)
T COG1902 5 KLFEPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPG 84 (363)
T ss_pred ccCCCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHH
Confidence 36999999999999999999998753 3444445443 479999999887776543321 22
Q ss_pred hhhh--hccCCCCeEEEEecCCC----------------------------------------HHHHHHHHHHHhhhCCC
Q 005508 385 WALL--RRHSSEDLFGVQICGAY----------------------------------------PDTLARTVELIDQQCTV 422 (693)
Q Consensus 385 ~~ll--~~h~~e~p~gvQL~G~~----------------------------------------pe~~~~AA~~~~~~aG~ 422 (693)
|+.+ ..|..+.++++||++.. .++|++||+++. ++||
T Consensus 85 ~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~-~AGF 163 (363)
T COG1902 85 LKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAK-EAGF 163 (363)
T ss_pred HHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 4333 47888999999998432 157999999998 6999
Q ss_pred cEEEEcCC---------CCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCC-C----ChhHHHHHH
Q 005508 423 DFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYF-E----GKNRIDSLI 486 (693)
Q Consensus 423 D~IDLN~G---------CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~-d----~~~~~~~la 486 (693)
|+||||.+ +|..|.++|.||++|.+|.+++.|||++|++++ +.||.+++..... . +.+++.+++
T Consensus 164 DgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la 243 (363)
T COG1902 164 DGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELA 243 (363)
T ss_pred CEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHH
Confidence 99999865 699999999999999999999999999999999 5588888776322 1 245889999
Q ss_pred HHHHHcC-CCEEEEeccccc--C--ccC-CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 487 ADIGTWG-ASAVTVHGRTRQ--Q--RYS-KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 487 ~~L~eaG-~daItVHgRtr~--q--~yt-g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+.|++.| +|+|++.+.... + .+. ......+...++..+ .+|||++|+|++++.++++|++ +.||.|.+||+
T Consensus 244 ~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~-g~aDlVa~gR~ 320 (363)
T COG1902 244 KALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV--RIPVIAVGGINDPEQAEEILAS-GRADLVAMGRP 320 (363)
T ss_pred HHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHc-CCCCEEEechh
Confidence 9999999 799999875432 1 122 112345667788887 6999999999999999999997 67999999999
Q ss_pred HhhCCCchhHHHhccCC
Q 005508 561 ALIKPWIFTEIKEQRHW 577 (693)
Q Consensus 561 aL~nPwiF~eIke~~~~ 577 (693)
+|.||+|..++++++..
T Consensus 321 ~ladP~~~~k~~~g~~~ 337 (363)
T COG1902 321 FLADPDLVLKAAEGREL 337 (363)
T ss_pred hhcCccHHHHHHcCCCc
Confidence 99999999999998753
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=248.82 Aligned_cols=250 Identities=12% Similarity=0.149 Sum_probs=195.6
Q ss_pred CcCccccCCccccCcEEEccCCCC---------CcHHHHHHHHHcCCCEEEecccccchhccCCh-----------hhhh
Q 005508 327 KTHSREKKLIDFREKLYLAPLTTV---------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQA-----------SEWA 386 (693)
Q Consensus 327 ~~~p~ek~~l~lknriiLAPMt~v---------~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~-----------~e~~ 386 (693)
-|+|.+++++.|+||+++|||++. ++.-++++.++.|+++++||.+.+.+...+.. ..|+
T Consensus 3 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 82 (362)
T PRK10605 3 LFSPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWK 82 (362)
T ss_pred CCCCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHhCCCEEEECceeeCcccccCCCCCcccCHHHHHHHH
Confidence 488999999999999999999752 23455555556699999999998876533321 1233
Q ss_pred hh--hccCCCCeEEEEecCC------------------------------------------C------------HHHHH
Q 005508 387 LL--RRHSSEDLFGVQICGA------------------------------------------Y------------PDTLA 410 (693)
Q Consensus 387 ll--~~h~~e~p~gvQL~G~------------------------------------------~------------pe~~~ 410 (693)
.+ ..|..+.++++||++. . .+.|+
T Consensus 83 ~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 162 (362)
T PRK10605 83 KITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDFR 162 (362)
T ss_pred HHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHHH
Confidence 22 4688888999998531 0 25789
Q ss_pred HHHHHHhhhCCCcEEEEcCC---------CCCcccccCCccccccCChHHHHHHHHHhccccc-cCEEEEecCC-----C
Q 005508 411 RTVELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD-KPITIKVRTG-----Y 475 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~G---------CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~-iPVtVKiR~G-----~ 475 (693)
.||+++. ++|||+||||++ .|..|.++|.||++|.+|.+++.+||++|+++++ ..|.|||..- .
T Consensus 163 ~AA~rA~-~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~ 241 (362)
T PRK10605 163 QAIANAR-EAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNV 241 (362)
T ss_pred HHHHHHH-HcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccC
Confidence 9999998 799999999977 5999999999999999999999999999999983 2477777531 1
Q ss_pred C--CChhH-HHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc
Q 005508 476 F--EGKNR-IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 552 (693)
Q Consensus 476 ~--d~~~~-~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga 552 (693)
. .+.++ +.++++.|++.|+|+|.|....... ..+....+.++|++.+ ++||+++|++ +++.++++|++ +.|
T Consensus 242 ~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~--~~~~~~~~~~~ik~~~--~~pv~~~G~~-~~~~ae~~i~~-G~~ 315 (362)
T PRK10605 242 DNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG--GEPYSDAFREKVRARF--HGVIIGAGAY-TAEKAETLIGK-GLI 315 (362)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEeccccccC--CccccHHHHHHHHHHC--CCCEEEeCCC-CHHHHHHHHHc-CCC
Confidence 1 12345 7999999999999999997642111 1122345678889888 6999999996 99999999997 779
Q ss_pred CEEEEcHHHhhCCCchhHHHhccCCCCCHHH
Q 005508 553 ASCMIARGALIKPWIFTEIKEQRHWDITSGE 583 (693)
Q Consensus 553 DgVMIGRgaL~nPwiF~eIke~~~~d~s~~E 583 (693)
|.|++||++|.||+|.+++++++..+.+...
T Consensus 316 D~V~~gR~~iadPd~~~k~~~g~~~~~~~~~ 346 (362)
T PRK10605 316 DAVAFGRDYIANPDLVARLQRKAELNPQRPE 346 (362)
T ss_pred CEEEECHHhhhCccHHHHHhcCCCCCCCChh
Confidence 9999999999999999999999887665433
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=250.39 Aligned_cols=246 Identities=17% Similarity=0.176 Sum_probs=183.5
Q ss_pred CcCccccCCccccCcEEEccCCCCC--------c-HHHHHHHH--HcCCCEEEecccccchhccCChh-----------h
Q 005508 327 KTHSREKKLIDFREKLYLAPLTTVG--------N-LPFRRVCK--VLGADVTCGEMAMCTNLLQGQAS-----------E 384 (693)
Q Consensus 327 ~~~p~ek~~l~lknriiLAPMt~v~--------d-lpFRrl~~--~~Gadl~~TEM~~a~~ll~g~~~-----------e 384 (693)
-|+|.++++++|+||+++|||++.. + ...+++.+ +.|+++++||.+.+.+...+... .
T Consensus 2 LF~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~ 81 (341)
T PF00724_consen 2 LFSPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPG 81 (341)
T ss_dssp GGS-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHH
T ss_pred CCCCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHH
Confidence 3889999999999999999997632 2 22333332 36899999999998886553321 2
Q ss_pred hhhh--hccCCCCeEEEEecCC----------------C---------------------------HHHHHHHHHHHhhh
Q 005508 385 WALL--RRHSSEDLFGVQICGA----------------Y---------------------------PDTLARTVELIDQQ 419 (693)
Q Consensus 385 ~~ll--~~h~~e~p~gvQL~G~----------------~---------------------------pe~~~~AA~~~~~~ 419 (693)
|+.+ ..|..+.++++||++. + .+.|++||+++. +
T Consensus 82 ~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~-~ 160 (341)
T PF00724_consen 82 LKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAK-E 160 (341)
T ss_dssp HHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHH-H
Confidence 3322 4788899999999841 0 267999999998 6
Q ss_pred CCCcEEEEcCC---------CCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCC-C---ChhHHHH
Q 005508 420 CTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYF-E---GKNRIDS 484 (693)
Q Consensus 420 aG~D~IDLN~G---------CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~-d---~~~~~~~ 484 (693)
+|||+||||++ +|..|.++|.||++|.+|.+++.+||++|++++ +.||.|||..... + ..++..+
T Consensus 161 AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~ 240 (341)
T PF00724_consen 161 AGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIE 240 (341)
T ss_dssp TT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHH
T ss_pred hccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHH
Confidence 99999999987 599999999999999999999999999999998 6788888776321 1 1246678
Q ss_pred HHHHHHHcCCCEEEEeccc----ccCc------cCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCE
Q 005508 485 LIADIGTWGASAVTVHGRT----RQQR------YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 554 (693)
Q Consensus 485 la~~L~eaG~daItVHgRt----r~q~------ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDg 554 (693)
+++.+++.|++.+.+.... .... .......+++..+++.+ ++|||++|+|.+++.+++++++ +.||.
T Consensus 241 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~-g~~Dl 317 (341)
T PF00724_consen 241 IAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEE-GKADL 317 (341)
T ss_dssp HHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHT-TSTSE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc--CceEEEEeeecchhhhHHHHhc-CCceE
Confidence 8999999999988754321 0111 11112356788888888 7999999999999999999997 88999
Q ss_pred EEEcHHHhhCCCchhHHHhccC
Q 005508 555 CMIARGALIKPWIFTEIKEQRH 576 (693)
Q Consensus 555 VMIGRgaL~nPwiF~eIke~~~ 576 (693)
|++||++|.||+|.+++++++.
T Consensus 318 V~~gR~~ladPd~~~k~~~g~~ 339 (341)
T PF00724_consen 318 VAMGRPLLADPDLPNKAREGRE 339 (341)
T ss_dssp EEESHHHHH-TTHHHHHHHTTG
T ss_pred eeccHHHHhCchHHHHHHcCCc
Confidence 9999999999999999999864
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-26 Score=244.34 Aligned_cols=232 Identities=14% Similarity=0.140 Sum_probs=180.6
Q ss_pred ccccCCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhc-c------------C--------C--hhhh-
Q 005508 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL-Q------------G--------Q--ASEW- 385 (693)
Q Consensus 330 p~ek~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll-~------------g--------~--~~e~- 385 (693)
+.+..++.|+|++++|-=.+-+....+++. ..|++.+++..+...+-. + + + ...|
T Consensus 40 ~~~~~Gl~l~nPi~~AsG~~~~~~~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~ 118 (327)
T cd04738 40 EVEVFGLTFPNPVGLAAGFDKNAEAIDALL-ALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVA 118 (327)
T ss_pred ceEECCEECCCCCEeCcCCCCCHHHHHHHH-HCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHH
Confidence 567889999999999854332234456655 689998888776654210 0 0 0 0111
Q ss_pred hhhhccC-CCCeEEEEecCCC-------HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHH
Q 005508 386 ALLRRHS-SEDLFGVQICGAY-------PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 457 (693)
Q Consensus 386 ~ll~~h~-~e~p~gvQL~G~~-------pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~ 457 (693)
..++... .+.|+++||+|++ .++|+++++.+.. ++|+||||++||... |..++.+++.+.+|++
T Consensus 119 ~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~--~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~ 190 (327)
T cd04738 119 KRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP--YADYLVVNVSSPNTP------GLRDLQGKEALRELLT 190 (327)
T ss_pred HHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh--hCCEEEEECCCCCCC------ccccccCHHHHHHHHH
Confidence 1222222 4689999999987 6889888888763 489999999999842 3445899999999999
Q ss_pred Hhccccc-----cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEeccccc-------------CccCCCc----cHH
Q 005508 458 ATSGTVD-----KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ-------------QRYSKLA----DWD 515 (693)
Q Consensus 458 av~~~v~-----iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~-------------q~ytg~A----dw~ 515 (693)
+|++.++ +||+||++.++. .++..++++.++++|+++|++|+|+.. ++|++++ .|+
T Consensus 191 av~~~~~~~~~~~Pv~vKl~~~~~--~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~ 268 (327)
T cd04738 191 AVKEERNKLGKKVPLLVKIAPDLS--DEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTE 268 (327)
T ss_pred HHHHHHhhcccCCCeEEEeCCCCC--HHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHH
Confidence 9999886 999999998764 356889999999999999999998752 3566655 389
Q ss_pred HHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC-CCchhHHHhc
Q 005508 516 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 574 (693)
Q Consensus 516 ~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-PwiF~eIke~ 574 (693)
+|+++++.++.++|||++|||.|++|+.+++. .|||+|||||+++.+ ||+|.+|.++
T Consensus 269 ~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~--aGAd~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 269 VLRELYKLTGGKIPIIGVGGISSGEDAYEKIR--AGASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH--cCCCHHhccHHHHhhCcHHHHHHHhc
Confidence 99999998854599999999999999999997 689999999999986 9999999764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=240.95 Aligned_cols=232 Identities=16% Similarity=0.130 Sum_probs=180.0
Q ss_pred ccccCCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhc-c------------------C--C--hhhh-
Q 005508 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL-Q------------------G--Q--ASEW- 385 (693)
Q Consensus 330 p~ek~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll-~------------------g--~--~~e~- 385 (693)
+.+..++.|+|++++|-=.+-+-..+|+ +...|++.+++..+...+-. + | + ...|
T Consensus 50 ~~~~~Gl~l~nPi~~AsG~~~~~~~~~~-~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~ 128 (344)
T PRK05286 50 PVTVMGLTFPNPVGLAAGFDKNGEAIDA-LGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALA 128 (344)
T ss_pred ceEECCEECCCCCEECCCCCCChHHHHH-HHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHH
Confidence 5678899999999998533322244555 45789998888776554211 0 0 0 0111
Q ss_pred hhhhccCCCCeEEEEecCC-------CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHH
Q 005508 386 ALLRRHSSEDLFGVQICGA-------YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 458 (693)
Q Consensus 386 ~ll~~h~~e~p~gvQL~G~-------~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~a 458 (693)
..++......|++++|.|+ ..++|++.++.+.+ ++|+||||++||... |...+++++.+.+|+++
T Consensus 129 ~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~--~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~a 200 (344)
T PRK05286 129 ERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP--YADYFTVNISSPNTP------GLRDLQYGEALDELLAA 200 (344)
T ss_pred HHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh--hCCEEEEEccCCCCC------CcccccCHHHHHHHHHH
Confidence 1122221457899999986 57899999998863 699999999999853 33458999999999999
Q ss_pred hccccc-----cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccc-------------cCccCCCc----cHHH
Q 005508 459 TSGTVD-----KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-------------QQRYSKLA----DWDY 516 (693)
Q Consensus 459 v~~~v~-----iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr-------------~q~ytg~A----dw~~ 516 (693)
|+++++ +||+||++.++. .+++.++++.++++|+|+|++|+|+. .++|++++ .|++
T Consensus 201 Vr~~~~~~~~~~PV~vKlsp~~~--~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~ 278 (344)
T PRK05286 201 LKEAQAELHGYVPLLVKIAPDLS--DEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEV 278 (344)
T ss_pred HHHHHhccccCCceEEEeCCCCC--HHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHH
Confidence 999986 999999998754 35688999999999999999999873 23566654 7999
Q ss_pred HHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC-CCchhHHHhc
Q 005508 517 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 574 (693)
Q Consensus 517 I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-PwiF~eIke~ 574 (693)
|+++++.++.++|||++|||.|++|+.+++. .|||+|||||+++.+ ||+|.+|+++
T Consensus 279 v~~l~~~~~~~ipIig~GGI~s~eda~e~l~--aGAd~V~v~~~~~~~gP~~~~~i~~~ 335 (344)
T PRK05286 279 IRRLYKELGGRLPIIGVGGIDSAEDAYEKIR--AGASLVQIYSGLIYEGPGLVKEIVRG 335 (344)
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHH--cCCCHHHHHHHHHHhCchHHHHHHHH
Confidence 9999998854699999999999999999997 689999999999885 9999999763
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-25 Score=239.96 Aligned_cols=249 Identities=10% Similarity=0.033 Sum_probs=188.5
Q ss_pred CCcCccccCCccccCcEEEccCCCC-------CcHHHHHHHHHc-CCCEEEecccccchhccCCh-----------hhhh
Q 005508 326 LKTHSREKKLIDFREKLYLAPLTTV-------GNLPFRRVCKVL-GADVTCGEMAMCTNLLQGQA-----------SEWA 386 (693)
Q Consensus 326 ~~~~p~ek~~l~lknriiLAPMt~v-------~dlpFRrl~~~~-Gadl~~TEM~~a~~ll~g~~-----------~e~~ 386 (693)
.-|+|.++++++|+||+++|||++. |+.-..++..+. |.++++||.+.+.+-..+.. ..|+
T Consensus 11 ~Lf~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~ 90 (391)
T PLN02411 11 TLFSPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQVEAWK 90 (391)
T ss_pred hcCCCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCCCCCccCCHHHHHHHH
Confidence 4799999999999999999999763 333333333332 33999999998876544322 1233
Q ss_pred hh--hccCCCCeEEEEecCC----------------------------------------C------------HHHHHHH
Q 005508 387 LL--RRHSSEDLFGVQICGA----------------------------------------Y------------PDTLART 412 (693)
Q Consensus 387 ll--~~h~~e~p~gvQL~G~----------------------------------------~------------pe~~~~A 412 (693)
.+ ..|..+.++++||++. . .+.|++|
T Consensus 91 ~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~A 170 (391)
T PLN02411 91 KVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQA 170 (391)
T ss_pred HHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHHH
Confidence 22 4688888899998520 0 2578999
Q ss_pred HHHHhhhCCCcEEEEcCC---------CCCcccccCCccccccCChHHHHHHHHHhccccc-cCEEEEecCCC-------
Q 005508 413 VELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD-KPITIKVRTGY------- 475 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~G---------CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~-iPVtVKiR~G~------- 475 (693)
|+++. ++|||+||||++ +|..|.++|.||++|.+|.+++.+||++|+++++ -.|.|||....
T Consensus 171 A~rA~-~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~ 249 (391)
T PLN02411 171 ALNAI-RAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATD 249 (391)
T ss_pred HHHHH-HcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCC
Confidence 99998 699999999986 5999999999999999999999999999999983 24777777421
Q ss_pred CCChhHHHHHHHHHHHc------CCCEEEEecccccC-------ccCCCccH-HHHHHHHHHcCCCceEEEeCCCCCHHH
Q 005508 476 FEGKNRIDSLIADIGTW------GASAVTVHGRTRQQ-------RYSKLADW-DYIYQCARKASDDLQVLGNGDIYSYLD 541 (693)
Q Consensus 476 ~d~~~~~~~la~~L~ea------G~daItVHgRtr~q-------~ytg~Adw-~~I~~i~~~~~~~IPVIgNGdI~s~eD 541 (693)
.+..++...+++.|+.. |+|+|+|....... .+.....+ .+.+++++.+ ++|||++|+| +.++
T Consensus 250 ~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~ 326 (391)
T PLN02411 250 SDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY--QGTFMCSGGF-TREL 326 (391)
T ss_pred CcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc--CCCEEEECCC-CHHH
Confidence 11234567788888763 59999998653211 01011122 4668899988 6999999999 6799
Q ss_pred HHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCCC
Q 005508 542 WNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDI 579 (693)
Q Consensus 542 a~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~ 579 (693)
++++|++ +.||.|.+||++|.||+|.+++++++.+..
T Consensus 327 a~~~l~~-g~aDlV~~gR~~iadPdl~~k~~~g~~l~~ 363 (391)
T PLN02411 327 GMQAVQQ-GDADLVSYGRLFISNPDLVLRFKLNAPLNK 363 (391)
T ss_pred HHHHHHc-CCCCEEEECHHHHhCccHHHHHhcCCCCCC
Confidence 9999986 679999999999999999999999987744
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=230.56 Aligned_cols=228 Identities=16% Similarity=0.156 Sum_probs=174.4
Q ss_pred cccCCccccCcEEEc--cCCCCCcHHHHHHHHHcCCCEEEecccccchhcc-CCh-------------------------
Q 005508 331 REKKLIDFREKLYLA--PLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQ-GQA------------------------- 382 (693)
Q Consensus 331 ~ek~~l~lknriiLA--PMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~-g~~------------------------- 382 (693)
.+..++.|+|++++| |++.. ...+++ +...|++.++|..+...++.+ |++
T Consensus 4 v~~~Gl~l~nPv~~ASg~~~~~-~e~~~~-~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n 81 (325)
T cd04739 4 TTYLGLSLKNPLVASASPLSRN-LDNIRR-LEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYN 81 (325)
T ss_pred EEECCEecCCCCEeCCcCCCCC-HHHHHH-HHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccC
Confidence 456789999999996 66543 334444 556799888887766543111 110
Q ss_pred ---hhhh-hhhc--cCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHH
Q 005508 383 ---SEWA-LLRR--HSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGII 456 (693)
Q Consensus 383 ---~e~~-ll~~--h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV 456 (693)
..|. .+.. ...+.|+++||+|+++++|.++|+.+. ++|+|+||||++||.. ..+.+|+.+ ++.+.++|
T Consensus 82 ~g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~-~~gad~iElN~s~~~~--~~~~~g~~~---~~~~~eiv 155 (325)
T cd04739 82 LGPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIE-EAGADALELNIYALPT--DPDISGAEV---EQRYLDIL 155 (325)
T ss_pred cCHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCC--CCCcccchH---HHHHHHHH
Confidence 0110 1111 122679999999999999999999997 6799999999999642 224456544 57899999
Q ss_pred HHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEeccccc-------------CccCCCc----cHHHHHH
Q 005508 457 EATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ-------------QRYSKLA----DWDYIYQ 519 (693)
Q Consensus 457 ~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~-------------q~ytg~A----dw~~I~~ 519 (693)
+++++.+++||+||++.... +..++++.++++|+++|++|+|+.. ..+++++ .|++|++
T Consensus 156 ~~v~~~~~iPv~vKl~p~~~----~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~ 231 (325)
T cd04739 156 RAVKSAVTIPVAVKLSPFFS----ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAI 231 (325)
T ss_pred HHHHhccCCCEEEEcCCCcc----CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHH
Confidence 99999999999999998542 4788999999999999999998622 2234443 3788999
Q ss_pred HHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC-CCchhHHHhc
Q 005508 520 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 574 (693)
Q Consensus 520 i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-PwiF~eIke~ 574 (693)
+++.+ ++||||+|||.|++|+.++|. .|||+|||||+++.+ |.++.+|.++
T Consensus 232 v~~~~--~ipIig~GGI~s~~Da~e~l~--aGA~~Vqv~ta~~~~gp~~~~~i~~~ 283 (325)
T cd04739 232 LSGRV--KASLAASGGVHDAEDVVKYLL--AGADVVMTTSALLRHGPDYIGTLLAG 283 (325)
T ss_pred HHccc--CCCEEEECCCCCHHHHHHHHH--cCCCeeEEehhhhhcCchHHHHHHHH
Confidence 99887 799999999999999999997 699999999999995 9999998763
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=221.44 Aligned_cols=228 Identities=16% Similarity=0.152 Sum_probs=172.2
Q ss_pred cccCCccccCcEEEc--cCCCCCcHHHHHHHHHcCCCEEEecccccchhc-------c----------------------
Q 005508 331 REKKLIDFREKLYLA--PLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL-------Q---------------------- 379 (693)
Q Consensus 331 ~ek~~l~lknriiLA--PMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll-------~---------------------- 379 (693)
.+..++.|+|++++| |+++ +...+++ +...|++.++|..+.-.+.. +
T Consensus 5 ~~~~Gl~l~nPv~~asg~~~~-~~~~~~~-~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl~ 82 (334)
T PRK07565 5 TTYLGLTLRNPLVASASPLSE-SVDNVKR-LEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAKF 82 (334)
T ss_pred EEECCEecCCCCEecCcCCCC-CHHHHHH-HHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhcc
Confidence 457789999999877 4543 3344555 44678888877766532210 0
Q ss_pred -CChhhhh-hhh--ccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHH
Q 005508 380 -GQASEWA-LLR--RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455 (693)
Q Consensus 380 -g~~~e~~-ll~--~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eI 455 (693)
....+|. .+. ....+.|+++||+|.+++.+.++|+.+. ++|+|+||||++||.... +..|.. .++.+.++
T Consensus 83 n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~-~agad~ielN~scpp~~~--~~~g~~---~~~~~~ei 156 (334)
T PRK07565 83 YVGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIE-QAGADALELNIYYLPTDP--DISGAE---VEQRYLDI 156 (334)
T ss_pred CcCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHH-HcCCCEEEEeCCCCCCCC--CCcccc---HHHHHHHH
Confidence 0011221 111 1223579999999999999999999997 679999999999976432 333432 34668899
Q ss_pred HHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEeccccc-------------CccCCCc----cHHHHH
Q 005508 456 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ-------------QRYSKLA----DWDYIY 518 (693)
Q Consensus 456 V~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~-------------q~ytg~A----dw~~I~ 518 (693)
+++|++.+++||+||++.++. +..++++.|+++|+++|++|+|... ..+++++ .|++|+
T Consensus 157 l~~v~~~~~iPV~vKl~p~~~----~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~ 232 (334)
T PRK07565 157 LRAVKSAVSIPVAVKLSPYFS----NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIA 232 (334)
T ss_pred HHHHHhccCCcEEEEeCCCch----hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHH
Confidence 999999999999999998652 4678999999999999999998632 1234443 368889
Q ss_pred HHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC-CCchhHHHhc
Q 005508 519 QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 574 (693)
Q Consensus 519 ~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-PwiF~eIke~ 574 (693)
++++.+ ++||||+|||+|++|+.++|. .|||+|||||+++.+ |.++.+|.++
T Consensus 233 ~~~~~~--~ipIig~GGI~s~~Da~e~l~--aGA~~V~v~t~~~~~g~~~~~~i~~~ 285 (334)
T PRK07565 233 ILSGRV--GADLAATTGVHDAEDVIKMLL--AGADVVMIASALLRHGPDYIGTILRG 285 (334)
T ss_pred HHHhhc--CCCEEEECCCCCHHHHHHHHH--cCCCceeeehHHhhhCcHHHHHHHHH
Confidence 999888 699999999999999999997 699999999999996 9999888764
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=218.08 Aligned_cols=229 Identities=13% Similarity=0.066 Sum_probs=181.6
Q ss_pred cccCCccccCcEEEccCCCCC------cHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCC
Q 005508 331 REKKLIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 404 (693)
Q Consensus 331 ~ek~~l~lknriiLAPMt~v~------dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~ 404 (693)
.++-+..|..++++|||++.+ +..+++.|.++|+.+++++|... ....++.. .+.|+++||++.
T Consensus 56 ~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~---------~~~~i~~~-~~~~~~~ql~~~ 125 (299)
T cd02809 56 TTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTT---------SLEEVAAA-APGPRWFQLYVP 125 (299)
T ss_pred eEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcC---------CHHHHHHh-cCCCeEEEEeec
Confidence 455667788999999997764 68999999999999999988732 12222221 237999999987
Q ss_pred -CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHH
Q 005508 405 -YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 483 (693)
Q Consensus 405 -~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~ 483 (693)
+++.+.++++.+. ..|+|+|+||++||....+ ...++++.+++.+++||+||.... .
T Consensus 126 ~~~~~~~~~i~~~~-~~g~~~i~l~~~~p~~~~~-------------~~~~~i~~l~~~~~~pvivK~v~s--------~ 183 (299)
T cd02809 126 RDREITEDLLRRAE-AAGYKALVLTVDTPVLGRR-------------LTWDDLAWLRSQWKGPLILKGILT--------P 183 (299)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEecCCCCCCCC-------------CCHHHHHHHHHhcCCCEEEeecCC--------H
Confidence 8999999998887 5799999999999975332 244678888888889999997642 3
Q ss_pred HHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 484 SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 484 ~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
+.++.+.++|+++|+||++...+.+.+++.|..+.++++.++.++|||++|||.+..|+.++|. .|||+|||||
T Consensus 184 ~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~--lGAd~V~ig~---- 257 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA--LGADAVLIGR---- 257 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH--cCCCEEEEcH----
Confidence 5688999999999999887777788899999999999988743599999999999999999997 6999999999
Q ss_pred CCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 005508 564 KPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601 (693)
Q Consensus 564 nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gs 601 (693)
||++..+..+.. ...+.++.++++++..+...|.
T Consensus 258 -~~l~~~~~~g~~---~v~~~i~~l~~el~~~m~~~G~ 291 (299)
T cd02809 258 -PFLYGLAAGGEA---GVAHVLEILRDELERAMALLGC 291 (299)
T ss_pred -HHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHCC
Confidence 666665543321 2345677788888888877775
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=211.59 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=153.0
Q ss_pred cccCCccccCcEEEccCCCCCcHHHHHHHHHcCC-CEEEecccccchhccCChhhhhhhhccCCCCeEEEEecC--CCHH
Q 005508 331 REKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG--AYPD 407 (693)
Q Consensus 331 ~ek~~l~lknriiLAPMt~v~dlpFRrl~~~~Ga-dl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G--~~pe 407 (693)
..++.+.|++++++|||.+++|.+||.+|+++|+ ++ ++++.|.+.+. ...++.+||+| ++++
T Consensus 36 ~~i~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~~----------~~~~~~~QI~g~~~~~~ 100 (369)
T TIGR01304 36 WQIDAYRFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRHE----------DPDPAIAKIAEAYEEGD 100 (369)
T ss_pred eEEcceecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcCC----------CHHHHHHHHhhcCCChH
Confidence 3567888999999999999999999999999998 77 56666655432 33345599999 5676
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHH
Q 005508 408 TLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIA 487 (693)
Q Consensus 408 ~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~ 487 (693)
. ++||++++ +.+++. .+|+++.++|++|+++. ||||+|++. .++.++++
T Consensus 101 ~-a~aa~~~~-e~~~~~----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~----~~~~e~a~ 149 (369)
T TIGR01304 101 Q-AAATRLLQ-ELHAAP----------------------LKPELLGERIAEVRDSG---VITAVRVSP----QNAREIAP 149 (369)
T ss_pred H-HHHHHHHH-HcCCCc----------------------cChHHHHHHHHHHHhcc---eEEEEecCC----cCHHHHHH
Confidence 7 89999887 556555 37999999999999873 999999953 36789999
Q ss_pred HHHHcCCCEEEEecccccCcc-CCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 488 DIGTWGASAVTVHGRTRQQRY-SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 488 ~L~eaG~daItVHgRtr~q~y-tg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
.+.++|+++|+||||++.|.| ++.++|..+.++.+.. ++|||+ |+|.|++++.+++. +|||+||+|||.-
T Consensus 150 ~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~-G~V~t~e~A~~~~~--aGaDgV~~G~gg~ 220 (369)
T TIGR01304 150 IVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIA-GGVNDYTTALHLMR--TGAAGVIVGPGGA 220 (369)
T ss_pred HHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEE-eCCCCHHHHHHHHH--cCCCEEEECCCCC
Confidence 999999999999999999999 6668999999999888 799998 99999999999876 7999999999774
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=206.50 Aligned_cols=236 Identities=12% Similarity=0.122 Sum_probs=176.2
Q ss_pred ccccCCccccCcEEEccCCCCCcHHH-HHHHHHcCCCEEEecccccchh--ccC-----------------------C--
Q 005508 330 SREKKLIDFREKLYLAPLTTVGNLPF-RRVCKVLGADVTCGEMAMCTNL--LQG-----------------------Q-- 381 (693)
Q Consensus 330 p~ek~~l~lknriiLAPMt~v~dlpF-Rrl~~~~Gadl~~TEM~~a~~l--l~g-----------------------~-- 381 (693)
..+..++.|+|++++|-=+-.++... +++.. .|++-++|..+...+- .+. +
T Consensus 12 st~~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~-~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~N~~ 90 (385)
T PLN02495 12 SVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFD-EGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNIE 90 (385)
T ss_pred eEEECCEEcCCCcEeCCccCCCCHHHHHHHHh-cCCeEEEeccccCCccccCCCCCeEEecCcccccccccccccccCcc
Confidence 45678999999999994433445555 55554 4888887766543220 000 0
Q ss_pred ------hhhh-hhh---hccCCCCeEEEEecC-CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChH
Q 005508 382 ------ASEW-ALL---RRHSSEDLFGVQICG-AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPM 450 (693)
Q Consensus 382 ------~~e~-~ll---~~h~~e~p~gvQL~G-~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~ 450 (693)
...| ..+ +..-...|++++|+| .++++|.+.|++++ ++|+|+||||++||+.... .+.|.++.++|+
T Consensus 91 ~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e-~~GaD~iELNiSCPn~~~~-r~~g~~~gq~~e 168 (385)
T PLN02495 91 LISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVE-ETGVDALEINFSCPHGMPE-RKMGAAVGQDCD 168 (385)
T ss_pred cccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHH-hcCCCEEEEECCCCCCCCc-CccchhhccCHH
Confidence 1111 111 111124699999977 89999999999997 6899999999999996443 356899999999
Q ss_pred HHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEeccccc---------------------CccC
Q 005508 451 RMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ---------------------QRYS 509 (693)
Q Consensus 451 ~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~---------------------q~yt 509 (693)
.+.+|+++|++.+++||.||+...+ .+...+++.+.+.|+++|++..+... +.|+
T Consensus 169 ~~~~i~~~Vk~~~~iPv~vKLsPn~----t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlS 244 (385)
T PLN02495 169 LLEEVCGWINAKATVPVWAKMTPNI----TDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYS 244 (385)
T ss_pred HHHHHHHHHHHhhcCceEEEeCCCh----hhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCcc
Confidence 9999999999989999999999855 34788999999999999999775421 1133
Q ss_pred CCc----cHHHHHHHHHHcC----CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC-CCchhHHHhc
Q 005508 510 KLA----DWDYIYQCARKAS----DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 574 (693)
Q Consensus 510 g~A----dw~~I~~i~~~~~----~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-PwiF~eIke~ 574 (693)
|++ .+..++++++.+. .++||||.|||.|++|+.+++. .||+.|+|+.+++.+ |.++.+|.++
T Consensus 245 G~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~--aGAs~VQv~Ta~~~~Gp~vi~~i~~~ 316 (385)
T PLN02495 245 SKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFIL--LGADTVQVCTGVMMHGYPLVKNLCAE 316 (385)
T ss_pred chhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHH--hCCCceeEeeeeeecCcHHHHHHHHH
Confidence 332 2344555666542 1499999999999999999998 599999999999999 9999998753
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-20 Score=196.46 Aligned_cols=232 Identities=12% Similarity=0.124 Sum_probs=171.2
Q ss_pred cccCCccccCcEEEccCCCC-CcHHHHHHHHHcCCCEEEecccccchhccCC----------------------hhhhh-
Q 005508 331 REKKLIDFREKLYLAPLTTV-GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ----------------------ASEWA- 386 (693)
Q Consensus 331 ~ek~~l~lknriiLAPMt~v-~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~----------------------~~e~~- 386 (693)
.+..+++|+|++++|-=+.. +...+|+ +...|++.++|..+...+-. |+ ...|.
T Consensus 4 ~~~~Gl~l~NPv~~AsG~~~~~~e~~~~-~~~~g~Gavv~ktit~~p~~-gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~ 81 (310)
T PRK02506 4 TQIAGFKFDNCLMNAAGVYCMTKEELEE-VEASAAGAFVTKSATLEPRP-GNPEPRYADTPLGSINSMGLPNLGFDYYLD 81 (310)
T ss_pred eEECCEECCCCCEeCCCCCCCCHHHHHH-HHHcCCcEEEeCccCCCCCC-CCCCCeEEECcchhhccCCCCCcCHHHHHH
Confidence 46778999999999955442 3345665 45678998888776554321 11 11221
Q ss_pred hh---hccCCCCeEEEEecCCCHHHHHHHHHHHhhhCC-CcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccc
Q 005508 387 LL---RRHSSEDLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT 462 (693)
Q Consensus 387 ll---~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG-~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~ 462 (693)
.+ +....+.|++++|.|.++++|.+.|+.++ .+| +|+||||++||+.. + |..+-.+++.+.+|+++|++.
T Consensus 82 ~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~-~~g~ad~iElN~ScPn~~----~-~~~~g~d~~~~~~i~~~v~~~ 155 (310)
T PRK02506 82 YVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQ-ASDFNGLVELNLSCPNVP----G-KPQIAYDFETTEQILEEVFTY 155 (310)
T ss_pred HHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHh-hcCCCCEEEEECCCCCCC----C-ccccccCHHHHHHHHHHHHHh
Confidence 11 12223589999999999999999999987 677 89999999999831 2 555667899999999999999
Q ss_pred cccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecc-------------cc------cCccCCCc----cHHHHHH
Q 005508 463 VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGR-------------TR------QQRYSKLA----DWDYIYQ 519 (693)
Q Consensus 463 v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgR-------------tr------~q~ytg~A----dw~~I~~ 519 (693)
+.+||.||+++..+ .....+++..+.+.|+++|+...+ .. .++++|++ .+.+|++
T Consensus 156 ~~~Pv~vKlsp~~~--~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~ 233 (310)
T PRK02506 156 FTKPLGVKLPPYFD--IVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRA 233 (310)
T ss_pred cCCccEEecCCCCC--HHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHH
Confidence 99999999999752 244445555556677777654331 11 12235544 4678888
Q ss_pred HHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh-CCCchhHHHhc
Q 005508 520 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKEQ 574 (693)
Q Consensus 520 i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~-nPwiF~eIke~ 574 (693)
+++.++.++||||+|||.|++|+.+++. .|||+|||+.+++. .|.+|.+|.++
T Consensus 234 ~~~~~~~~ipIig~GGI~s~~da~e~i~--aGA~~Vqv~ta~~~~gp~~~~~i~~~ 287 (310)
T PRK02506 234 FYQRLNPSIQIIGTGGVKTGRDAFEHIL--CGASMVQVGTALHKEGPAVFERLTKE 287 (310)
T ss_pred HHHhcCCCCCEEEECCCCCHHHHHHHHH--cCCCHHhhhHHHHHhChHHHHHHHHH
Confidence 8888754699999999999999999997 69999999999998 69999998763
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=195.36 Aligned_cols=232 Identities=16% Similarity=0.149 Sum_probs=176.5
Q ss_pred ccccCCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhc-cC--------------------C--hhhh-
Q 005508 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL-QG--------------------Q--ASEW- 385 (693)
Q Consensus 330 p~ek~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll-~g--------------------~--~~e~- 385 (693)
..+..++.|+|++++|-=.+-+....+.+. ..|++.+++..+...+-. +. + ...|
T Consensus 47 ~~~~~Gl~l~NPi~lAsG~~~~~~~~~~~~-~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l 125 (335)
T TIGR01036 47 EVTVLGLKFPNPLGLAAGFDKDGEAIDALG-AMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLV 125 (335)
T ss_pred cEEECCEECCCCcEeCCccCCCHHHHHHHH-hcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHH
Confidence 567889999999999854443333455554 469998887776644211 00 0 0111
Q ss_pred hhhhccCCCCeEEEEecCC-------CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHH
Q 005508 386 ALLRRHSSEDLFGVQICGA-------YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 458 (693)
Q Consensus 386 ~ll~~h~~e~p~gvQL~G~-------~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~a 458 (693)
..++.+....+++|+|.++ ..++|++.++.+.+ .+|+||||.+||+.. |...+.+++.+.+|+++
T Consensus 126 ~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~--~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~ 197 (335)
T TIGR01036 126 ERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP--LADYLVVNVSSPNTP------GLRDLQYKAELRDLLTA 197 (335)
T ss_pred HHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh--hCCEEEEEccCCCCC------CcccccCHHHHHHHHHH
Confidence 1123344567899999877 57899999998863 489999999999842 34556889999999999
Q ss_pred hccccc-------cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccc-------------cCccCCCc----cH
Q 005508 459 TSGTVD-------KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-------------QQRYSKLA----DW 514 (693)
Q Consensus 459 v~~~v~-------iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr-------------~q~ytg~A----dw 514 (693)
|++.++ +||.||+...+. .++...+++.+.++|+++|++..++. .++++|++ .+
T Consensus 198 V~~~~~~~~~~~~~Pv~vKLsP~~~--~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al 275 (335)
T TIGR01036 198 VKQEQDGLRRVHRVPVLVKIAPDLT--ESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKST 275 (335)
T ss_pred HHHHHHhhhhccCCceEEEeCCCCC--HHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHH
Confidence 998876 999999998753 34688999999999999999987642 23455554 36
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC-CCchhHHHhc
Q 005508 515 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 574 (693)
Q Consensus 515 ~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-PwiF~eIke~ 574 (693)
.+|+++++.++.++||||+|||.+++|+.+++. .|||.|+||++++.+ |+++.+|.++
T Consensus 276 ~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~--aGA~~Vqv~ta~~~~Gp~~~~~i~~~ 334 (335)
T TIGR01036 276 EIIRRLYAELQGRLPIIGVGGISSAQDALEKIR--AGASLLQIYSGFIYWGPPLVKEIVKE 334 (335)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH--cCCcHHHhhHHHHHhCchHHHHHHhh
Confidence 788888887754699999999999999999998 589999999999885 9999999763
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=189.86 Aligned_cols=229 Identities=19% Similarity=0.237 Sum_probs=177.6
Q ss_pred ccCCccccCcEEEccCCCC-CcHHHHHHHHHcCCCEEEecccccchhccCC----------------------hhhhhhh
Q 005508 332 EKKLIDFREKLYLAPLTTV-GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ----------------------ASEWALL 388 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~v-~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~----------------------~~e~~ll 388 (693)
+.-+++|+|+++||-=... .-..++.++. .|++.+.+..+...+-. |+ .....++
T Consensus 5 ~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~~-~g~G~i~~ktvt~~pq~-Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~ 82 (310)
T COG0167 5 EILGLKFPNPLGLAAGFDGKNGEELDALAA-LGFGAIVTKTVTPEPQE-GNPKPRLFRLPEDEGLINRMGFNNPGADAFL 82 (310)
T ss_pred eecceecCCCCeEcccCCccCHHHHHHHHh-cCCceEEecCCCCcCCC-CCCCCeEEEecCcccHHHhcCCCchhHHHHH
Confidence 4789999999999754443 3345555553 56888777666544311 11 0011111
Q ss_pred ---h-cc----CCCCeEEEEecCCCHHHHHHHHHHHhhhCC-CcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHh
Q 005508 389 ---R-RH----SSEDLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT 459 (693)
Q Consensus 389 ---~-~h----~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG-~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av 459 (693)
. .+ .-+.+++....+...+.|...+..++ .++ +|.|+||.+||+. .| |..|-.+++.+.+++++|
T Consensus 83 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~-~~~~ad~ielNiScPnt----~g-~~~l~~~~e~l~~l~~~v 156 (310)
T COG0167 83 EELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLE-EAGDADAIELNISCPNT----PG-GRALGQDPELLEKLLEAV 156 (310)
T ss_pred HHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHH-hcCCCCEEEEEccCCCC----CC-hhhhccCHHHHHHHHHHH
Confidence 1 11 12345788888889999999999987 566 8999999999983 34 888888999999999999
Q ss_pred ccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccc-----------------cCccCCCc----cHHHHH
Q 005508 460 SGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-----------------QQRYSKLA----DWDYIY 518 (693)
Q Consensus 460 ~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr-----------------~q~ytg~A----dw~~I~ 518 (693)
++.+.+||.|||.+ +..++.++|+.+.++|+|+|++...+. .++++|++ ...+|+
T Consensus 157 k~~~~~Pv~vKl~P----~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~ 232 (310)
T COG0167 157 KAATKVPVFVKLAP----NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVA 232 (310)
T ss_pred HhcccCceEEEeCC----CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHH
Confidence 99999999999998 346789999999999999999876332 23355554 478899
Q ss_pred HHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC-CCchhHHHhc
Q 005508 519 QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 574 (693)
Q Consensus 519 ~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-PwiF~eIke~ 574 (693)
++++.+...+||||.|||.|++||.+++. .||+.|+|+.+++.+ |++|.+|.++
T Consensus 233 ~l~~~~~~~ipIIGvGGI~s~~DA~E~i~--aGA~~vQv~Tal~~~Gp~i~~~I~~~ 287 (310)
T COG0167 233 ELYKRLGGDIPIIGVGGIETGEDALEFIL--AGASAVQVGTALIYKGPGIVKEIIKG 287 (310)
T ss_pred HHHHhcCCCCcEEEecCcCcHHHHHHHHH--cCCchheeeeeeeeeCchHHHHHHHH
Confidence 99998855699999999999999999998 599999999999999 9999999764
|
|
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=184.57 Aligned_cols=231 Identities=15% Similarity=0.184 Sum_probs=163.9
Q ss_pred cccCCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCCh------------------------hhh-
Q 005508 331 REKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQA------------------------SEW- 385 (693)
Q Consensus 331 ~ek~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~------------------------~e~- 385 (693)
.+..+|.|+|++++|-=.+-.-.-.+++. ++|++.+++.-+...+.. |++ ..|
T Consensus 4 ~~~~Gl~l~nPi~~asG~~~~~~~~~~~~-~~G~Gavv~ksvt~~~~~-gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~ 81 (295)
T PF01180_consen 4 TNFCGLTLKNPIGLASGLDKNGEEIKRLF-DAGFGAVVTKSVTPEPRE-GNPEPRIFRLPEGESILNSMGLPNPGLEYYL 81 (295)
T ss_dssp EEETTEEESSSEEE-TTSSTSSHHHHHHH-HHSSSEEEEEEE-SSGB---SSSS-EEEETTETEEEE---S-BSHHHHHH
T ss_pred EEECCEEcCCCcEECCcCCCCchhhhhhh-cCCccEEEeccccccccc-cccCCcEEeeccccccccccCCChHHHHHHH
Confidence 46789999999999842222223445544 568988877665544321 110 011
Q ss_pred hhh----hccC--CCCeEEEEecCCC---HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHH
Q 005508 386 ALL----RRHS--SEDLFGVQICGAY---PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGII 456 (693)
Q Consensus 386 ~ll----~~h~--~e~p~gvQL~G~~---pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV 456 (693)
..+ +... ...|+++++.|.. .++|.+.|+.+. .|+|+||||++||... .+..+..+++...+|+
T Consensus 82 ~~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~--~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~ 154 (295)
T PF01180_consen 82 ERLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE--AGADALELNLSCPNVP-----GGRPFGQDPELVAEIV 154 (295)
T ss_dssp HHHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH--HHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHH
T ss_pred HHHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc--CcCCceEEEeeccCCC-----CccccccCHHHHHHHH
Confidence 001 1111 3568999999999 999999999887 5799999999999753 3456677899999999
Q ss_pred HHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEeccc----------c-------cCccCCCc----cHH
Q 005508 457 EATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRT----------R-------QQRYSKLA----DWD 515 (693)
Q Consensus 457 ~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRt----------r-------~q~ytg~A----dw~ 515 (693)
+.+++.+++||.||+.....+ .....++..+.+.|+++|++..++ + ..+++|++ .+.
T Consensus 155 ~~v~~~~~~Pv~vKL~p~~~~--~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~ 232 (295)
T PF01180_consen 155 RAVREAVDIPVFVKLSPNFTD--IEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALR 232 (295)
T ss_dssp HHHHHHHSSEEEEEE-STSSC--HHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHH
T ss_pred HHHHhccCCCEEEEecCCCCc--hHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHH
Confidence 999998899999999996543 334566777779999999954432 1 11245554 467
Q ss_pred HHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHH-hhCCCchhHHHhc
Q 005508 516 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA-LIKPWIFTEIKEQ 574 (693)
Q Consensus 516 ~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga-L~nPwiF~eIke~ 574 (693)
+|+++++.++.++||||+|||+|++|+.++|. .|||.|+|+.++ +..|+++.+|.++
T Consensus 233 ~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~--aGA~~Vqv~Sal~~~Gp~~~~~i~~~ 290 (295)
T PF01180_consen 233 WVRELRKALGQDIPIIGVGGIHSGEDAIEFLM--AGASAVQVCSALIYRGPGVIRRINRE 290 (295)
T ss_dssp HHHHHHHHTTTSSEEEEESS--SHHHHHHHHH--HTESEEEESHHHHHHGTTHHHHHHHH
T ss_pred HHHHHHhccccceEEEEeCCcCCHHHHHHHHH--hCCCHheechhhhhcCcHHHHHHHHH
Confidence 88999999854599999999999999999998 599999999999 6699999999764
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=176.16 Aligned_cols=232 Identities=15% Similarity=0.135 Sum_probs=172.6
Q ss_pred CccccCCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchh-----------------cc--C--C--hhhh
Q 005508 329 HSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNL-----------------LQ--G--Q--ASEW 385 (693)
Q Consensus 329 ~p~ek~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~l-----------------l~--g--~--~~e~ 385 (693)
.+.+..++.|+|++.||-=..-....++.+. .+|++.+.+..+...+- ++ | + ...|
T Consensus 74 L~~~~~Gl~f~NPvglAAG~dkn~~~~~~l~-~lGfG~vevgTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~ 152 (409)
T PLN02826 74 LGVEVWGRTFSNPIGLAAGFDKNAEAVEGLL-GLGFGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAV 152 (409)
T ss_pred cceEECCEECCCCCEECcccCCCHHHHHHHH-hcCCCeEEeCCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHH
Confidence 3668889999999999976654445666655 46888877766654321 00 0 0 0111
Q ss_pred -hhhhcc-C-----------------------CCCeEEEEecCC-----CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcc
Q 005508 386 -ALLRRH-S-----------------------SEDLFGVQICGA-----YPDTLARTVELIDQQCTVDFIDINMGCPIDI 435 (693)
Q Consensus 386 -~ll~~h-~-----------------------~e~p~gvQL~G~-----~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~ 435 (693)
..++.. . ...+++|.|.++ .+++|.++++.+.. .+|+|+||.+||+..
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~--~aDylelNiScPNtp 230 (409)
T PLN02826 153 AKRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQ--YADYLVINVSSPNTP 230 (409)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccCceEEEEeccCCCCcccHHHHHHHHHHHhh--hCCEEEEECCCCCCC
Confidence 111111 0 123899999877 58999999998873 489999999999852
Q ss_pred cccCCccccccCChHHHHHHHHHhccc---------cccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccc--
Q 005508 436 VVNKGAGSCLLTKPMRMKGIIEATSGT---------VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-- 504 (693)
Q Consensus 436 v~k~G~GsaLl~rp~~l~eIV~av~~~---------v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr-- 504 (693)
|-..+.+++.+.+++++|+++ ..+||.||+..... .++..++++.+.+.|+++|++..++.
T Consensus 231 ------glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~--~~di~~ia~~a~~~G~dGIi~~NTt~~r 302 (409)
T PLN02826 231 ------GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLS--KEDLEDIAAVALALGIDGLIISNTTISR 302 (409)
T ss_pred ------CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCC--HHHHHHHHHHHHHcCCCEEEEEcccCcC
Confidence 334467889999999988643 36899999988543 35688999999999999999987542
Q ss_pred ------------cCccCCCc----cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC-CCc
Q 005508 505 ------------QQRYSKLA----DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWI 567 (693)
Q Consensus 505 ------------~q~ytg~A----dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n-Pwi 567 (693)
.++++|++ -+++|+++++.+..++||||.|||.|.+|+.+++. .||+.|+|+++++.+ |++
T Consensus 303 ~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~--AGAs~VQv~Ta~~~~Gp~~ 380 (409)
T PLN02826 303 PDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIR--AGASLVQLYTAFAYEGPAL 380 (409)
T ss_pred ccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH--hCCCeeeecHHHHhcCHHH
Confidence 12355554 46788999988865699999999999999999998 599999999999985 999
Q ss_pred hhHHHh
Q 005508 568 FTEIKE 573 (693)
Q Consensus 568 F~eIke 573 (693)
+.+|++
T Consensus 381 i~~I~~ 386 (409)
T PLN02826 381 IPRIKA 386 (409)
T ss_pred HHHHHH
Confidence 998875
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=172.76 Aligned_cols=213 Identities=18% Similarity=0.258 Sum_probs=153.1
Q ss_pred ccCCccccCcEEEccCCCCC------cHHHHHHHHHcCCCEEEecccccchhccC-ChhhhhhhhccCCCCeEEEEecCC
Q 005508 332 EKKLIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQG-QASEWALLRRHSSEDLFGVQICGA 404 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~v~------dlpFRrl~~~~Gadl~~TEM~~a~~ll~g-~~~e~~ll~~h~~e~p~gvQL~G~ 404 (693)
+.-+..|+.+++.||||+.+ |..+-+.|.+.|..+.++....+ +... ...++..++....+.|+++.|++.
T Consensus 46 ~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~--~~~~~~~~~~~~vr~~~~~~p~i~nl~~~ 123 (333)
T TIGR02151 46 EFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAA--LKDPETADTFEVVREEAPNGPLIANIGAP 123 (333)
T ss_pred EECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhh--ccChhhHhHHHHHHHhCCCCcEEeecCch
Confidence 44567789999999999999 55555588889998887764322 1111 123444555545678888877643
Q ss_pred -----CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCCh
Q 005508 405 -----YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGK 479 (693)
Q Consensus 405 -----~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~ 479 (693)
+++.+.++++.+ +.|+++||+.|+...+...|.. +.+.+.++|+++++.+++||.||.. |..
T Consensus 124 ~~~~~~~~~~~~~i~~i----~adal~i~ln~~q~~~~p~g~~-----~f~~~le~i~~i~~~~~vPVivK~~-g~g--- 190 (333)
T TIGR02151 124 QLVEGGPEEAQEAIDMI----EADALAIHLNVLQELVQPEGDR-----NFKGWLEKIAEICSQLSVPVIVKEV-GFG--- 190 (333)
T ss_pred hhccccHHHHHHHHHHh----cCCCEEEcCcccccccCCCCCc-----CHHHHHHHHHHHHHhcCCCEEEEec-CCC---
Confidence 344565655554 4789999999998766655553 2355778899999988999999976 331
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccC-------c----c--CCCccH-----HHHHHHHH-HcCCCceEEEeCCCCCHH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQ-------R----Y--SKLADW-----DYIYQCAR-KASDDLQVLGNGDIYSYL 540 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q-------~----y--tg~Adw-----~~I~~i~~-~~~~~IPVIgNGdI~s~e 540 (693)
...++++.|+++|+|+|+||||.... + + ....+| +.+.++++ .. ++|||++|||.+..
T Consensus 191 -~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~--~ipVIasGGI~~~~ 267 (333)
T TIGR02151 191 -ISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAP--DAPIIASGGLRTGL 267 (333)
T ss_pred -CCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCC--CCeEEEECCCCCHH
Confidence 24689999999999999999974211 0 1 112355 35556665 33 69999999999999
Q ss_pred HHHHHHhcCCCcCEEEEcHHHhhC
Q 005508 541 DWNKHKSDCPELASCMIARGALIK 564 (693)
Q Consensus 541 Da~~~l~~~~gaDgVMIGRgaL~n 564 (693)
|+.++|. .|||+||+||++|..
T Consensus 268 di~kaLa--lGAd~V~igr~~L~~ 289 (333)
T TIGR02151 268 DVAKAIA--LGADAVGMARPFLKA 289 (333)
T ss_pred HHHHHHH--hCCCeehhhHHHHHH
Confidence 9999998 479999999999843
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-16 Score=168.76 Aligned_cols=212 Identities=17% Similarity=0.202 Sum_probs=154.4
Q ss_pred CccccCcEEEccCCCCCcHHHHH------HHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEec-----C
Q 005508 335 LIDFREKLYLAPLTTVGNLPFRR------VCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQIC-----G 403 (693)
Q Consensus 335 ~l~lknriiLAPMt~v~dlpFRr------l~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~-----G 403 (693)
+..|..+++.|||++.+.+.++. .|.++|..+.++.+-..-.-- ....++..++......||++.|+ +
T Consensus 56 g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~-~~~~~~~~vr~~~p~~p~~aNl~~~~~~~ 134 (352)
T PRK05437 56 GKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDP-ELADSFSVVRKVAPDGLLFANLGAVQLYG 134 (352)
T ss_pred CceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccCh-hhHHHHHHHHHHCCCceEEeecCccccCC
Confidence 45788999999999998755544 677889999988874321100 12234455555555778887555 4
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHH
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 483 (693)
Q Consensus 404 ~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~ 483 (693)
.+++.+.++++.+ +.|+++||++||...+...|. .+.+.+.++|+++++.+++||.||... .. ...
T Consensus 135 ~~~~~~~~~~~~~----~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~g-~g----~s~ 200 (352)
T PRK05437 135 YGVEEAQRAVEMI----EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKEVG-FG----ISK 200 (352)
T ss_pred CCHHHHHHHHHhc----CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEeCC-CC----CcH
Confidence 5567777776655 479999999998876654443 355667899999999999999999873 21 236
Q ss_pred HHHHHHHHcCCCEEEEeccccc-------Cc------cCCCccH-----HHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 005508 484 SLIADIGTWGASAVTVHGRTRQ-------QR------YSKLADW-----DYIYQCARKASDDLQVLGNGDIYSYLDWNKH 545 (693)
Q Consensus 484 ~la~~L~eaG~daItVHgRtr~-------q~------ytg~Adw-----~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 545 (693)
+.++.|.++|+|+|+|+|+... .+ +....+| ..+.++++... ++|||++|+|.+..|+.++
T Consensus 201 ~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~-~ipvia~GGI~~~~dv~k~ 279 (352)
T PRK05437 201 ETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLP-DLPIIASGGIRNGLDIAKA 279 (352)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcC-CCeEEEECCCCCHHHHHHH
Confidence 8889999999999999986420 01 1112234 46677777632 6999999999999999999
Q ss_pred HhcCCCcCEEEEcHHHhhC
Q 005508 546 KSDCPELASCMIARGALIK 564 (693)
Q Consensus 546 l~~~~gaDgVMIGRgaL~n 564 (693)
|. .|||+|+|||++|..
T Consensus 280 l~--~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 280 LA--LGADAVGMAGPFLKA 296 (352)
T ss_pred HH--cCCCEEEEhHHHHHH
Confidence 98 489999999999863
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-17 Score=177.82 Aligned_cols=178 Identities=14% Similarity=0.127 Sum_probs=143.4
Q ss_pred cccCCccccCcEEEccCCCCCcHHHHHHHHHcCC-CEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHH
Q 005508 331 REKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTL 409 (693)
Q Consensus 331 ~ek~~l~lknriiLAPMt~v~dlpFRrl~~~~Ga-dl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~ 409 (693)
.....+.|+.++++|||+++++.+|+..+.++|+ +++.++.+. .++....++..||++.++
T Consensus 39 ~~~~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~---------------~~~~~~e~l~~qi~~~~~--- 100 (368)
T PRK08649 39 WQIDAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLW---------------TRYEDPEPILDEIASLGK--- 100 (368)
T ss_pred eeecceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeecccc---------------ccCCCHHHHHHHHHhcCc---
Confidence 3456888999999999999999999999999987 888744332 233344556678888777
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHH
Q 005508 410 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 489 (693)
Q Consensus 410 ~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L 489 (693)
.++|+++++ .+.+ | .+|+++.++|++++++ + |+||+|++ ..++.++++.|
T Consensus 101 ~~~~~~~~~-~~~~--------P--------------~~p~l~~~iv~~~~~~-~--V~v~vr~~----~~~~~e~a~~l 150 (368)
T PRK08649 101 DEATRLMQE-LYAE--------P--------------IKPELITERIAEIRDA-G--VIVAVSLS----PQRAQELAPTV 150 (368)
T ss_pred HHHHHHHHH-hhcC--------C--------------CCHHHHHHHHHHHHhC-e--EEEEEecC----CcCHHHHHHHH
Confidence 455666552 2222 3 4699999999999986 3 66777773 24578999999
Q ss_pred HHcCCCEEEEecccccCccCCCc-cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHH
Q 005508 490 GTWGASAVTVHGRTRQQRYSKLA-DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 490 ~eaG~daItVHgRtr~q~ytg~A-dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 561 (693)
.++|+++|++|+|++.|.|.... +|..+.++.+.. ++|||+ |+|.|++++.++++ .|||+||+|||-
T Consensus 151 ~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa-G~V~t~e~A~~l~~--aGAD~V~VG~G~ 218 (368)
T PRK08649 151 VEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV-GGCVTYTTALHLMR--TGAAGVLVGIGP 218 (368)
T ss_pred HHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-eCCCCHHHHHHHHH--cCCCEEEECCCC
Confidence 99999999999999999998877 799888888887 799999 99999999999875 799999999885
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=162.69 Aligned_cols=129 Identities=14% Similarity=0.236 Sum_probs=112.2
Q ss_pred CccccccCChHHHHHHHHHhcccc--ccCE---EEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccH
Q 005508 440 GAGSCLLTKPMRMKGIIEATSGTV--DKPI---TIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW 514 (693)
Q Consensus 440 G~GsaLl~rp~~l~eIV~av~~~v--~iPV---tVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw 514 (693)
+.|++++++|+++.++++.+.+.+ .+++ .||++ ||.+...+..++++.+++.|++.|++|+|++.+.|+++ ||
T Consensus 102 viGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~ 179 (241)
T PRK14024 102 NIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP-NL 179 (241)
T ss_pred EECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC-CH
Confidence 568999999999999999987655 5566 77775 89876678899999999999999999999999999985 99
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh-cCCCcCEEEEcHHHhhCCCchhHHH
Q 005508 515 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS-DCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 515 ~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~-~~~gaDgVMIGRgaL~nPwiF~eIk 572 (693)
+.+.++++.+ ++|||+||||.|.+|+.+++. ..+|||||||||+++..+-=+.+++
T Consensus 180 ~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~ 236 (241)
T PRK14024 180 ELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEAL 236 (241)
T ss_pred HHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHH
Confidence 9999999988 799999999999999998753 1269999999999999986666654
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-14 Score=157.19 Aligned_cols=213 Identities=18% Similarity=0.181 Sum_probs=150.7
Q ss_pred ccCCccccCcEEEccCCCCC------cHHHHHHHHHcCCCEEEecccccchhccC-ChhhhhhhhccCCCCeEEEEecC-
Q 005508 332 EKKLIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQG-QASEWALLRRHSSEDLFGVQICG- 403 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~v~------dlpFRrl~~~~Gadl~~TEM~~a~~ll~g-~~~e~~ll~~h~~e~p~gvQL~G- 403 (693)
+.-+..|+.+++.|||++.+ +..+-+.+.+.|..+.++..... +... ...++..++....+.||++.|+.
T Consensus 45 ~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~--~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~ 122 (326)
T cd02811 45 EFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAA--LEDPELAESFTVVREAPPNGPLIANLGAV 122 (326)
T ss_pred EECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhh--ccChhhhhHHHHHHHhCCCceEEeecCcc
Confidence 34566899999999999987 56667777788877666554211 1110 11344556666666787766654
Q ss_pred ----CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCCh
Q 005508 404 ----AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGK 479 (693)
Q Consensus 404 ----~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~ 479 (693)
.+++.+.++.+.+ +.|+++||++||+..+...|. ++.+.+.+.|+.+++.+++||.||+...
T Consensus 123 ~~~~~~~~~~~~~i~~~----~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vPVivK~~g~----- 188 (326)
T cd02811 123 QLNGYGVEEARRAVEMI----EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVPVIVKEVGF----- 188 (326)
T ss_pred ccCCCCHHHHHHHHHhc----CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCCEEEEecCC-----
Confidence 4567776666554 579999999998765544442 3455677889999998999999998542
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccc---------cCcc------CCCccH-----HHHHHHHHHcCCCceEEEeCCCCCH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTR---------QQRY------SKLADW-----DYIYQCARKASDDLQVLGNGDIYSY 539 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr---------~q~y------tg~Adw-----~~I~~i~~~~~~~IPVIgNGdI~s~ 539 (693)
....+.++.|.++|+|+|+|+|+-. .+.. ....+| ..+.++++.++ ++|||++|||.+.
T Consensus 189 g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~ 267 (326)
T cd02811 189 GISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNG 267 (326)
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCH
Confidence 1235888999999999999988511 0101 111233 46667777664 6999999999999
Q ss_pred HHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 540 LDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 540 eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
.|+.++|. .|||+|+|||++|.
T Consensus 268 ~dv~kal~--lGAd~V~i~~~~L~ 289 (326)
T cd02811 268 LDIAKALA--LGADLVGMAGPFLK 289 (326)
T ss_pred HHHHHHHH--hCCCEEEEcHHHHH
Confidence 99999998 48999999999873
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-14 Score=142.01 Aligned_cols=187 Identities=13% Similarity=0.130 Sum_probs=135.0
Q ss_pred cCcEEEccCCCCCcHHHHHHHHHcCC-CEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCH-HHHHHHHHHH
Q 005508 339 REKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYP-DTLARTVELI 416 (693)
Q Consensus 339 knriiLAPMt~v~dlpFRrl~~~~Ga-dl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~p-e~~~~AA~~~ 416 (693)
+.++++|||+++++..|+..+.++|+ +++.++|+....+..-- ..++.. .+.++++++..+++ ..+.+.++.+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~----~~i~~~-~~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEI----RKIRAL-TDKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHH----HHHHHh-cCCCeEEeEecCCCCcCHHHHHHHH
Confidence 47899999999999999999999875 77767777555443211 112211 14578899999875 3455555566
Q ss_pred hhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCE
Q 005508 417 DQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASA 496 (693)
Q Consensus 417 ~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~da 496 (693)
. ++|+|+|.|+.+++. ++++.+++ .++++.+++.. .+.+..+.+.|+++
T Consensus 77 ~-~~g~d~v~l~~~~~~--------------------~~~~~~~~-~~i~~i~~v~~---------~~~~~~~~~~gad~ 125 (236)
T cd04730 77 L-EEGVPVVSFSFGPPA--------------------EVVERLKA-AGIKVIPTVTS---------VEEARKAEAAGADA 125 (236)
T ss_pred H-hCCCCEEEEcCCCCH--------------------HHHHHHHH-cCCEEEEeCCC---------HHHHHHHHHcCCCE
Confidence 5 579999999876331 22333332 35777776532 24566777899999
Q ss_pred EEEecccccCccCCC---ccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 497 VTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 497 ItVHgRtr~q~ytg~---Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
|.++++.. +.+... ..|++++++++.+ ++||+++|||.+++++.+++. .|+|+||||++++..+.
T Consensus 126 i~~~~~~~-~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~--~GadgV~vgS~l~~~~e 193 (236)
T cd04730 126 LVAQGAEA-GGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALA--LGADGVQMGTRFLATEE 193 (236)
T ss_pred EEEeCcCC-CCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHH--cCCcEEEEchhhhcCcc
Confidence 99998732 333332 4688999999887 699999999999999999886 68999999999987764
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-13 Score=130.56 Aligned_cols=192 Identities=12% Similarity=0.018 Sum_probs=137.8
Q ss_pred EEEccCCCCC---cHHHHHHHHHcCCCEEEecccccchhccCChh-hhhhhhccCCCCeEEEEecCCCHHHHHH-HHHHH
Q 005508 342 LYLAPLTTVG---NLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS-EWALLRRHSSEDLFGVQICGAYPDTLAR-TVELI 416 (693)
Q Consensus 342 iiLAPMt~v~---dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~-e~~ll~~h~~e~p~gvQL~G~~pe~~~~-AA~~~ 416 (693)
+++++|++.. ...+.+.+.+.|++++.+......+.-..... +......+..+.|+++|+..+++..+.. +|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 4688998864 34555556677999888777665554332211 0011223445689999999988776553 34555
Q ss_pred hhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHcCCC
Q 005508 417 DQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGAS 495 (693)
Q Consensus 417 ~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~d 495 (693)
. ++|+|+|+||.+||.. ++.+.++++++++.+ ++|+.+|++...... .. .+.+.|++
T Consensus 81 ~-~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~--~~-----~~~~~g~d 138 (200)
T cd04722 81 R-AAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPTGELA--AA-----AAEEAGVD 138 (200)
T ss_pred H-HcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccc--hh-----hHHHcCCC
Confidence 5 6799999999999863 788899999999888 899999999754221 11 17889999
Q ss_pred EEEEecccccCccCCCc--cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 496 AVTVHGRTRQQRYSKLA--DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 496 aItVHgRtr~q~ytg~A--dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
+|.++++...+...... ...++..++... ++||+++|||.+++++.+++. .|||+||+||
T Consensus 139 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~~~GGi~~~~~~~~~~~--~Gad~v~vgs 200 (200)
T cd04722 139 EVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEALA--LGADGVIVGS 200 (200)
T ss_pred EEEEcCCcCCCCCccCchhHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHH--hCCCEEEecC
Confidence 99999987765543321 123455666555 699999999999999999887 4899999997
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=138.80 Aligned_cols=182 Identities=16% Similarity=0.184 Sum_probs=127.1
Q ss_pred HHHcCCCEE-EecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccc
Q 005508 359 CKVLGADVT-CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVV 437 (693)
Q Consensus 359 ~~~~Gadl~-~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~ 437 (693)
....|++.+ |+-. .....+....+.+++.-.....+-+|+.|. ...+..+.+++. .|+|.|=
T Consensus 39 ~~~~g~~~i~v~dl---d~~~~g~~~~~~~i~~i~~~~~~pv~~~GG-I~~~ed~~~~~~--~Ga~~vi----------- 101 (233)
T PRK00748 39 WEDQGAKWLHLVDL---DGAKAGKPVNLELIEAIVKAVDIPVQVGGG-IRSLETVEALLD--AGVSRVI----------- 101 (233)
T ss_pred HHHcCCCEEEEEeC---CccccCCcccHHHHHHHHHHCCCCEEEcCC-cCCHHHHHHHHH--cCCCEEE-----------
Confidence 344688644 4433 333344333343332111111233666543 334444444433 5777764
Q ss_pred cCCccccccCChHHHHHHHHHhccccccCEEEEec----CCCCC-ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCc
Q 005508 438 NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR----TGYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA 512 (693)
Q Consensus 438 k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR----~G~~d-~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~A 512 (693)
.|++++.+++.+.++++.+.+.+-++|.+|.+ .||.+ ......++++.+++.|++.|++|++++.+.+.+ +
T Consensus 102 ---lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~ 177 (233)
T PRK00748 102 ---IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSG-P 177 (233)
T ss_pred ---ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCC-C
Confidence 36788899999999999886654444444321 35533 234568899999999999999999999999998 8
Q ss_pred cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC
Q 005508 513 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 564 (693)
Q Consensus 513 dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 564 (693)
||+.++++++.+ ++|||++|||.|++|+.+++.. +|||||||||+++..
T Consensus 178 d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~-g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 178 NVEATRELAAAV--PIPVIASGGVSSLDDIKALKGL-GAVEGVIVGRALYEG 226 (233)
T ss_pred CHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHc-CCccEEEEEHHHHcC
Confidence 999999999988 6999999999999999998875 669999999999864
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=141.50 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=121.2
Q ss_pred EEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCC----
Q 005508 399 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG---- 474 (693)
Q Consensus 399 vQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G---- 474 (693)
+|+.| .+..+..+.+++ ..|++.|.|| ++++.+|.++.++++.+... .++|++++|.|
T Consensus 77 v~~gG-Gi~s~~d~~~l~--~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~ 138 (258)
T PRK01033 77 LCYGG-GIKTLEQAKKIF--SLGVEKVSIN--------------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGK 138 (258)
T ss_pred EEECC-CCCCHHHHHHHH--HCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCc
Confidence 57755 555666666555 3599999997 57889999999999988432 26777777765
Q ss_pred -------CC-CChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH
Q 005508 475 -------YF-EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK 546 (693)
Q Consensus 475 -------~~-d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l 546 (693)
|. .......++++.+++.|++.|++|++++.+.|+| .||+.+.++++.+ ++|||++|||.|.+|+.+++
T Consensus 139 ~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~ 215 (258)
T PRK01033 139 FDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAI 215 (258)
T ss_pred EEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHH
Confidence 21 2234578999999999999999999999999998 5999999999987 79999999999999999988
Q ss_pred hcCCCcCEEEEcHHHhhCCCchhHHH
Q 005508 547 SDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 547 ~~~~gaDgVMIGRgaL~nPwiF~eIk 572 (693)
+. .|||||++|+++.-.-.-..+++
T Consensus 216 ~~-~GvdgVivg~a~~~~~~~~~~~~ 240 (258)
T PRK01033 216 LN-LGADAAAAGSLFVFKGVYKAVLI 240 (258)
T ss_pred HH-CCCCEEEEcceeeeCcccccccc
Confidence 55 79999999998876533333333
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.2e-13 Score=135.67 Aligned_cols=186 Identities=17% Similarity=0.254 Sum_probs=129.9
Q ss_pred HHcCCCEE-EecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCccccc
Q 005508 360 KVLGADVT-CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN 438 (693)
Q Consensus 360 ~~~Gadl~-~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k 438 (693)
..+|++.+ +.-. .....+....+.+++.-.....+-+|+.|. ...+..+.+++. +|+|.|=|
T Consensus 39 ~~~g~d~l~v~dl---~~~~~~~~~~~~~i~~i~~~~~~pv~~~Gg-I~~~e~~~~~~~--~Gad~vvi----------- 101 (234)
T cd04732 39 EEAGAKWLHVVDL---DGAKGGEPVNLELIEEIVKAVGIPVQVGGG-IRSLEDIERLLD--LGVSRVII----------- 101 (234)
T ss_pred HHcCCCEEEEECC---CccccCCCCCHHHHHHHHHhcCCCEEEeCC-cCCHHHHHHHHH--cCCCEEEE-----------
Confidence 34688744 3311 112233334455544322222345777664 444444444443 68898844
Q ss_pred CCccccccCChHHHHHHHHHhcc-ccccCEEEE----ecCCCCC-ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCc
Q 005508 439 KGAGSCLLTKPMRMKGIIEATSG-TVDKPITIK----VRTGYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA 512 (693)
Q Consensus 439 ~G~GsaLl~rp~~l~eIV~av~~-~v~iPVtVK----iR~G~~d-~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~A 512 (693)
|++++.+|+.+.++++.+.. .+-+++.+| ++.+|.+ ...+..++++.++++|++.|++|++++.+.+.+ +
T Consensus 102 ---gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g-~ 177 (234)
T cd04732 102 ---GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG-P 177 (234)
T ss_pred ---CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC-C
Confidence 66788999999999998754 222223222 2234432 234678999999999999999999999999877 8
Q ss_pred cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhH
Q 005508 513 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 570 (693)
Q Consensus 513 dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~e 570 (693)
+|+.+.++++.+ ++|||++|||.+.+|+.+++. .|||+|||||+++.++--+.+
T Consensus 178 ~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~--~Ga~gv~vg~~~~~~~~~~~~ 231 (234)
T cd04732 178 NFELYKELAAAT--GIPVIASGGVSSLDDIKALKE--LGVAGVIVGKALYEGKITLEE 231 (234)
T ss_pred CHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHH--CCCCEEEEeHHHHcCCCCHHH
Confidence 999999999988 699999999999999999876 599999999999999854443
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.4e-14 Score=146.50 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=104.2
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHH
Q 005508 410 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 489 (693)
Q Consensus 410 ~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L 489 (693)
.++|++++ ++|++.|.+|.|||.+.+. .| |.++|++|+.+. +|++++++||++|+|.|. ..=++.|
T Consensus 27 ~~~a~iae-~~g~~~v~~~~~~psd~~~-~g-g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-------~~Ea~~L 92 (293)
T PRK04180 27 AEQAKIAE-EAGAVAVMALERVPADIRA-AG-GVARMADPKMIE----EIMDAVSIPVMAKARIGH-------FVEAQIL 92 (293)
T ss_pred HHHHHHHH-HhChHHHHHccCCCchHhh-cC-CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-------HHHHHHH
Confidence 46777776 7899999999999999754 44 999999999877 566667999999999984 2223344
Q ss_pred HHc---------------------------------------------CCCEEEEec--------------cc------c
Q 005508 490 GTW---------------------------------------------GASAVTVHG--------------RT------R 504 (693)
Q Consensus 490 ~ea---------------------------------------------G~daItVHg--------------Rt------r 504 (693)
+++ |+|+|--.| |+ .
T Consensus 93 ~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~ 172 (293)
T PRK04180 93 EALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRR 172 (293)
T ss_pred HHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 444 444442221 10 0
Q ss_pred cCccC----------CCccHHHHHHHHHHcCCCceEE--EeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 505 QQRYS----------KLADWDYIYQCARKASDDLQVL--GNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 505 ~q~yt----------g~Adw~~I~~i~~~~~~~IPVI--gNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
-..|+ -.++|+.++++++.. ++||| +.|||.|++++..+++ .|||+|+||++++..+.
T Consensus 173 L~gyt~~~~~~~a~~~~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme--~GAdgVaVGSaI~ks~d 242 (293)
T PRK04180 173 LTSMSEDELYTAAKELQAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQ--LGADGVFVGSGIFKSGD 242 (293)
T ss_pred HhCCCHHHHHhhccccCCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHH--hCCCEEEEcHHhhcCCC
Confidence 11222 236899999999987 69998 9999999999999886 69999999999986554
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-12 Score=138.77 Aligned_cols=196 Identities=20% Similarity=0.172 Sum_probs=140.2
Q ss_pred CccccCcEEEccCCCCCcHHHHHHHHHcC-CCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHH
Q 005508 335 LIDFREKLYLAPLTTVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTV 413 (693)
Q Consensus 335 ~l~lknriiLAPMt~v~dlpFRrl~~~~G-adl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA 413 (693)
.+.++.+++.|||.++|+..+...+.+.| .+++..+|.. ..+ .. .++... +..++.+..+..++....+.
T Consensus 30 ~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~----~~---~i~~vk-~~l~v~~~~~~~~~~~~~~~ 100 (325)
T cd00381 30 NITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQ----AE---EVRKVK-GRLLVGAAVGTREDDKERAE 100 (325)
T ss_pred ccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHH----HH---HHHHhc-cCceEEEecCCChhHHHHHH
Confidence 47788899999999999999998777765 5888777632 111 11 121111 33444566677777766666
Q ss_pred HHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHc
Q 005508 414 ELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTW 492 (693)
Q Consensus 414 ~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~ea 492 (693)
.+++ +|+|.|+|+++. | +++.+.++++.+++.. ++||.+ |.- ...+.+..+.++
T Consensus 101 ~l~e--agv~~I~vd~~~----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~v----~t~~~A~~l~~a 155 (325)
T cd00381 101 ALVE--AGVDVIVIDSAH----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GNV----VTAEAARDLIDA 155 (325)
T ss_pred HHHh--cCCCEEEEECCC----------C-----CcHHHHHHHHHHHHHCCCceEEE----CCC----CCHHHHHHHHhc
Confidence 5554 699999998732 1 2356678888888765 345544 321 235677888999
Q ss_pred CCCEEEEecc------cccCccCCCccHHHHHHHHHHcCC-CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 493 GASAVTVHGR------TRQQRYSKLADWDYIYQCARKASD-DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 493 G~daItVHgR------tr~q~ytg~Adw~~I~~i~~~~~~-~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
|+|+|.++++ ++...+.+.+.|..+.++.+.+.. ++|||++|||.+..|+.+++. .|||+|||||.++.-.
T Consensus 156 GaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla--~GA~~VmiGt~fa~t~ 233 (325)
T cd00381 156 GADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALA--AGADAVMLGSLLAGTD 233 (325)
T ss_pred CCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH--cCCCEEEecchhcccc
Confidence 9999999633 445556677889988888776521 499999999999999999997 6999999999998755
Q ss_pred C
Q 005508 566 W 566 (693)
Q Consensus 566 w 566 (693)
.
T Consensus 234 E 234 (325)
T cd00381 234 E 234 (325)
T ss_pred c
Confidence 3
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-12 Score=132.16 Aligned_cols=189 Identities=14% Similarity=0.167 Sum_probs=130.8
Q ss_pred HHcCCCEE-EecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCccccc
Q 005508 360 KVLGADVT-CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN 438 (693)
Q Consensus 360 ~~~Gadl~-~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k 438 (693)
..+|++.+ +-+.- ....+....+..++.-.....+-+|+.| ....+..+..++ .+|+|.|-|
T Consensus 42 ~~~G~~~l~i~dl~---~~~~~~~~~~~~i~~i~~~~~~~l~v~G-Gi~~~~~~~~~~--~~Ga~~v~i----------- 104 (241)
T PRK13585 42 VDAGAETLHLVDLD---GAFEGERKNAEAIEKIIEAVGVPVQLGG-GIRSAEDAASLL--DLGVDRVIL----------- 104 (241)
T ss_pred HHcCCCEEEEEech---hhhcCCcccHHHHHHHHHHcCCcEEEcC-CcCCHHHHHHHH--HcCCCEEEE-----------
Confidence 34687754 22211 1223333444444322222234467743 333444444344 369999877
Q ss_pred CCccccccCChHHHHHHHHHhc-cccccCEEEE---ec-CCCCCChh-HHHHHHHHHHHcCCCEEEEecccccCccCCCc
Q 005508 439 KGAGSCLLTKPMRMKGIIEATS-GTVDKPITIK---VR-TGYFEGKN-RIDSLIADIGTWGASAVTVHGRTRQQRYSKLA 512 (693)
Q Consensus 439 ~G~GsaLl~rp~~l~eIV~av~-~~v~iPVtVK---iR-~G~~d~~~-~~~~la~~L~eaG~daItVHgRtr~q~ytg~A 512 (693)
|+.++.+|+.+.++++.+. +.+-+.+.+| +. .||.+... +..++++.+.+.|++.|++|++++.+.+.+ .
T Consensus 105 ---Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g-~ 180 (241)
T PRK13585 105 ---GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEG-V 180 (241)
T ss_pred ---ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCC-C
Confidence 6778889999999998873 2221222222 11 26654333 678999999999999999999998877765 7
Q ss_pred cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 513 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 513 dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
+|+.++++++.+ ++|||++|||.|++|+.+++. .||++||+|++++.+|..+.++..
T Consensus 181 ~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~--~Ga~gv~vgsa~~~~~~~~~~~~~ 237 (241)
T PRK13585 181 NTEPVKELVDSV--DIPVIASGGVTTLDDLRALKE--AGAAGVVVGSALYKGKFTLEEAIE 237 (241)
T ss_pred CHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH--cCCCEEEEEHHHhcCCcCHHHHHH
Confidence 999999999988 699999999999999999654 799999999999999998887654
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=132.90 Aligned_cols=187 Identities=14% Similarity=0.178 Sum_probs=128.3
Q ss_pred HHHHHHHcCCC-EEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCC
Q 005508 355 FRRVCKVLGAD-VTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPI 433 (693)
Q Consensus 355 FRrl~~~~Gad-l~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~ 433 (693)
+-+.+...|++ ++++...... .+....+.+++.-.....+-+++.|. ...+..+.+.+. .|+|.|.++
T Consensus 32 ~a~~~~~~G~~~i~i~d~~~~~---~~~~~~~~~i~~i~~~~~~pv~~~GG-I~s~~d~~~~l~--~G~~~v~ig----- 100 (243)
T cd04731 32 LAKRYNEQGADELVFLDITASS---EGRETMLDVVERVAEEVFIPLTVGGG-IRSLEDARRLLR--AGADKVSIN----- 100 (243)
T ss_pred HHHHHHHCCCCEEEEEcCCccc---ccCcccHHHHHHHHHhCCCCEEEeCC-CCCHHHHHHHHH--cCCceEEEC-----
Confidence 33444567887 5555544321 11222333332111111123555553 223333344443 589999886
Q ss_pred cccccCCccccccCChHHHHHHHHHhcc-ccccCEE----------EEecCCCCCChhHHHHHHHHHHHcCCCEEEEecc
Q 005508 434 DIVVNKGAGSCLLTKPMRMKGIIEATSG-TVDKPIT----------IKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGR 502 (693)
Q Consensus 434 ~~v~k~G~GsaLl~rp~~l~eIV~av~~-~v~iPVt----------VKiR~G~~d~~~~~~~la~~L~eaG~daItVHgR 502 (693)
++++.+|+.+.++++.+.. .+-++|. |++|.++.+...++.++++.+.+.|+++|++|++
T Consensus 101 ---------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i 171 (243)
T cd04731 101 ---------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSM 171 (243)
T ss_pred ---------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEecc
Confidence 4677899999999998853 3444444 4455555555667889999999999999999999
Q ss_pred cccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 503 TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 503 tr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
++.+...+ .+|+++.++++.+ ++|||++|||.+++|+.+++.. +|||+||+||+++..=
T Consensus 172 ~~~g~~~g-~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~-~g~dgv~vg~al~~~~ 230 (243)
T cd04731 172 DRDGTKKG-YDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEE-GGADAALAASIFHFGE 230 (243)
T ss_pred CCCCCCCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHh-CCCCEEEEeHHHHcCC
Confidence 88665544 5999999999987 7999999999999999998886 7999999999987543
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-12 Score=129.52 Aligned_cols=179 Identities=15% Similarity=0.230 Sum_probs=124.6
Q ss_pred HHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccC
Q 005508 360 KVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNK 439 (693)
Q Consensus 360 ~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~ 439 (693)
..+|++-++- +.-.....+......+++.......+-+|+.| ....+..+.+.+ ++|+|.|=|
T Consensus 38 ~~~g~~~l~v--~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~gg-GI~~~ed~~~~~--~~Ga~~vvl------------ 100 (230)
T TIGR00007 38 EEEGAERIHV--VDLDGAKEGGPVNLPVIKKIVRETGVPVQVGG-GIRSLEDVEKLL--DLGVDRVII------------ 100 (230)
T ss_pred HHcCCCEEEE--EeCCccccCCCCcHHHHHHHHHhcCCCEEEeC-CcCCHHHHHHHH--HcCCCEEEE------------
Confidence 4578864432 22233333443333333322122223467744 333333333333 368888733
Q ss_pred CccccccCChHHHHHHHHHhc-cccccCEEEEec------CCCCCCh-hHHHHHHHHHHHcCCCEEEEecccccCccCCC
Q 005508 440 GAGSCLLTKPMRMKGIIEATS-GTVDKPITIKVR------TGYFEGK-NRIDSLIADIGTWGASAVTVHGRTRQQRYSKL 511 (693)
Q Consensus 440 G~GsaLl~rp~~l~eIV~av~-~~v~iPVtVKiR------~G~~d~~-~~~~~la~~L~eaG~daItVHgRtr~q~ytg~ 511 (693)
|+.++.+|+.+.++++.+. +. +.+++++| .||.+.. ....++++.+.+.|++.|++|.+++.+.+.+
T Consensus 101 --gs~~l~d~~~~~~~~~~~g~~~--i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g- 175 (230)
T TIGR00007 101 --GTAAVENPDLVKELLKEYGPER--IVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG- 175 (230)
T ss_pred --ChHHhhCHHHHHHHHHHhCCCc--EEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC-
Confidence 5678889999999999885 33 34555555 3565432 4567899999999999999999999988876
Q ss_pred ccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC
Q 005508 512 ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 564 (693)
Q Consensus 512 Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 564 (693)
.||+++.++++.+ ++|||++|||.+.+|+.+++. .|||+|||||+++.+
T Consensus 176 ~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~--~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 176 PNFELTKELVKAV--NVPVIASGGVSSIDDLIALKK--LGVYGVIVGKALYEG 224 (230)
T ss_pred CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH--CCCCEEEEeHHHHcC
Confidence 7999999999987 799999999999999999765 799999999999876
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=132.07 Aligned_cols=141 Identities=14% Similarity=0.125 Sum_probs=112.9
Q ss_pred EEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCC----
Q 005508 399 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG---- 474 (693)
Q Consensus 399 vQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G---- 474 (693)
+|+ |+.+..+..+.+++. .|++.|.|| ++++.+|+++.++++..... .+++++++|.+
T Consensus 77 v~~-~ggi~~~~d~~~~~~--~G~~~vilg--------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~ 138 (232)
T TIGR03572 77 LTV-GGGIRSLEDAKKLLS--LGADKVSIN--------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGS 138 (232)
T ss_pred EEE-ECCCCCHHHHHHHHH--cCCCEEEEC--------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCC
Confidence 555 555556666655443 589999986 67889999999999887433 25677777764
Q ss_pred --------CC-CChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 005508 475 --------YF-EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 545 (693)
Q Consensus 475 --------~~-d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 545 (693)
|. ....++.++++.++++|+++|++|++++.+.+.+ .+|++++++++.+ ++|||++|||.|.+|+.++
T Consensus 139 ~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~ 215 (232)
T TIGR03572 139 DYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEV 215 (232)
T ss_pred cEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHH
Confidence 21 1234578999999999999999999998887766 5999999999988 6999999999999999997
Q ss_pred HhcCCCcCEEEEcHHH
Q 005508 546 KSDCPELASCMIARGA 561 (693)
Q Consensus 546 l~~~~gaDgVMIGRga 561 (693)
+.. .|||+||||+++
T Consensus 216 l~~-~gadgV~vg~a~ 230 (232)
T TIGR03572 216 ALE-AGASAVAAASLF 230 (232)
T ss_pred HHH-cCCCEEEEehhh
Confidence 776 899999999875
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-11 Score=130.59 Aligned_cols=210 Identities=15% Similarity=0.109 Sum_probs=148.5
Q ss_pred ccCCccccCcEEEccCCCC------CcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecC-C
Q 005508 332 EKKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG-A 404 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~v------~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G-~ 404 (693)
++-+..+.-++++|||... ++...-+.|.+.|.-++.|-+.+.. ..+ +.....+.++-.||.- .
T Consensus 73 ~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~s------lEe---v~~~~~~~~~wfQlY~~~ 143 (367)
T TIGR02708 73 EFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTAD------LPE---ISEALNGTPHWFQFYMSK 143 (367)
T ss_pred eeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCC------HHH---HHhhcCCCceEEEEeccC
Confidence 4446677889999999653 3577778888889888877653221 111 2222224578899987 4
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccc---------------------cCCccccc-----cCChHHHHHHHHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVV---------------------NKGAGSCL-----LTKPMRMKGIIEA 458 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~---------------------k~G~GsaL-----l~rp~~l~eIV~a 458 (693)
+.+...+..++++ .+|+.+|=|..-+|+.-.+ ..+.+..+ ..++.+--+-|+.
T Consensus 144 dr~~~~~li~RA~-~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~ 222 (367)
T TIGR02708 144 DDGINRDIMDRVK-ADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEE 222 (367)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHH
Confidence 5555567777776 6899998887665532111 01111100 0112233356778
Q ss_pred hccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEE--ecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCC
Q 005508 459 TSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV--HGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDI 536 (693)
Q Consensus 459 v~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItV--HgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI 536 (693)
+++.+++||+|| |.. ..+.+.++.++||++|.| ||+ .|.+..++.|+.+.++++.+...+|||++|||
T Consensus 223 l~~~~~~PvivK---Gv~-----~~eda~~a~~~Gvd~I~VS~HGG--rq~~~~~a~~~~L~ei~~av~~~i~vi~dGGI 292 (367)
T TIGR02708 223 IAGYSGLPVYVK---GPQ-----CPEDADRALKAGASGIWVTNHGG--RQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGV 292 (367)
T ss_pred HHHhcCCCEEEe---CCC-----CHHHHHHHHHcCcCEEEECCcCc--cCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCc
Confidence 888889999999 432 257888899999998855 664 67788999999999999988546999999999
Q ss_pred CCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 537 YSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 537 ~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
.+..|+.++|. .|||+|||||.+|.
T Consensus 293 r~g~Dv~KaLa--lGAd~V~igR~~l~ 317 (367)
T TIGR02708 293 RRGQHVFKALA--SGADLVALGRPVIY 317 (367)
T ss_pred CCHHHHHHHHH--cCCCEEEEcHHHHH
Confidence 99999999998 69999999999873
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=129.19 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=130.3
Q ss_pred ccccCcEEEccCCCCCcHHHHHHHHHcC-CCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHH
Q 005508 336 IDFREKLYLAPLTTVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVE 414 (693)
Q Consensus 336 l~lknriiLAPMt~v~dlpFRrl~~~~G-adl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~ 414 (693)
+.++-+|+.|||.++++..|-..+.+.| .+++=........+ ..+...++. ..+.||++.+....|.. .+..+
T Consensus 8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l----~~~i~~~~~-~t~~pfgvn~~~~~~~~-~~~~~ 81 (307)
T TIGR03151 8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVV----RKEIRKVKE-LTDKPFGVNIMLLSPFV-DELVD 81 (307)
T ss_pred hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHH----HHHHHHHHH-hcCCCcEEeeecCCCCH-HHHHH
Confidence 3556789999999999988766666654 45442121111111 111222332 23579999987655543 33344
Q ss_pred HHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCC
Q 005508 415 LIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGA 494 (693)
Q Consensus 415 ~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~ 494 (693)
.+. +.+++.|-++.|.|. ++++.+++. ++.|.+.+.. .+.+..++++|+
T Consensus 82 ~~~-~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v~s---------~~~a~~a~~~Ga 130 (307)
T TIGR03151 82 LVI-EEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVVAS---------VALAKRMEKAGA 130 (307)
T ss_pred HHH-hCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEcCC---------HHHHHHHHHcCC
Confidence 444 468999998776652 345555543 6666665432 467889999999
Q ss_pred CEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 495 SAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 495 daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
|+|++||+...+......+|..+.++++.+ ++|||++|||.+++++.+++. .|||+||||+.++.-+
T Consensus 131 D~Ivv~g~eagGh~g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~al~--~GA~gV~iGt~f~~t~ 197 (307)
T TIGR03151 131 DAVIAEGMESGGHIGELTTMALVPQVVDAV--SIPVIAAGGIADGRGMAAAFA--LGAEAVQMGTRFLCAK 197 (307)
T ss_pred CEEEEECcccCCCCCCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHH--cCCCEeecchHHhccc
Confidence 999999995544333334899999999988 699999999999999999987 6999999999877654
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.8e-11 Score=123.17 Aligned_cols=178 Identities=9% Similarity=0.136 Sum_probs=127.8
Q ss_pred HHcCCC-EEEecccccchhccCChhhhhhhhccCCCCeEEEEecCC--CHHHHHHHHHHHhhhCCCcEEEEcCCCCCccc
Q 005508 360 KVLGAD-VTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIV 436 (693)
Q Consensus 360 ~~~Gad-l~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~--~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v 436 (693)
..+|++ +.++-...+. .+....+.+++.-.....+-+|+.|. +.+++.++ + .+|++.|-|
T Consensus 40 ~~~G~~~l~v~Dl~~~~---~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~---~--~~Ga~~viv--------- 102 (254)
T TIGR00735 40 DEEGADELVFLDITASS---EGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKL---L--RAGADKVSI--------- 102 (254)
T ss_pred HHcCCCEEEEEcCCccc---ccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHH---H--HcCCCEEEE---------
Confidence 456886 4566554332 23333444443211111234677664 45554443 3 258888877
Q ss_pred ccCCccccccCChHHHHHHHHHhc-ccc--cc-----CE------EEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecc
Q 005508 437 VNKGAGSCLLTKPMRMKGIIEATS-GTV--DK-----PI------TIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGR 502 (693)
Q Consensus 437 ~k~G~GsaLl~rp~~l~eIV~av~-~~v--~i-----PV------tVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgR 502 (693)
|++++.+|+++.++.+..- +.+ .+ ++ -||+|.++.....+...+++.+++.|++.|++|++
T Consensus 103 -----gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i 177 (254)
T TIGR00735 103 -----NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSM 177 (254)
T ss_pred -----ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCc
Confidence 4677889999999987763 222 22 22 58999887766678899999999999999999999
Q ss_pred cccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 503 TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 503 tr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
++.+ +...++|+++.++++.+ ++|||++|||.|++|+.+++.. ++||+||+|+.+..
T Consensus 178 ~~~g-~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~-g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 178 DKDG-TKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTK-GKADAALAASVFHY 234 (254)
T ss_pred Cccc-CCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHc-CCcceeeEhHHHhC
Confidence 8854 44558999999999988 7999999999999999998886 67999999998754
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=126.35 Aligned_cols=184 Identities=12% Similarity=0.158 Sum_probs=129.8
Q ss_pred HHHHHHHcCCCE-EEecccccchhccCChhhhhhhhccCCCCeEEEEecCC--CHHHHHHHHHHHhhhCCCcEEEEcCCC
Q 005508 355 FRRVCKVLGADV-TCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGC 431 (693)
Q Consensus 355 FRrl~~~~Gadl-~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~--~pe~~~~AA~~~~~~aG~D~IDLN~GC 431 (693)
+-+.+..+|++. +++....+. .+....|.+++.-.....+-+|+.|. +.+++.+ .+. +|++.|-|+
T Consensus 35 ~a~~~~~~G~~~i~i~dl~~~~---~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~---~l~--~Ga~~Viig--- 103 (253)
T PRK02083 35 LAKRYNEEGADELVFLDITASS---EGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARR---LLR--AGADKVSIN--- 103 (253)
T ss_pred HHHHHHHcCCCEEEEEeCCccc---ccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHH---HHH--cCCCEEEEC---
Confidence 333445678864 444433211 12333455443222222233666654 3444443 333 588998774
Q ss_pred CCcccccCCccccccCChHHHHHHHHHhc-----cccc-------cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEE
Q 005508 432 PIDIVVNKGAGSCLLTKPMRMKGIIEATS-----GTVD-------KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV 499 (693)
Q Consensus 432 P~~~v~k~G~GsaLl~rp~~l~eIV~av~-----~~v~-------iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItV 499 (693)
+.++.+|+.+.++.+.+- -.++ .|++||+|.++........+++..+.+.|++.|++
T Consensus 104 -----------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~ 172 (253)
T PRK02083 104 -----------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILL 172 (253)
T ss_pred -----------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEE
Confidence 667889999999999872 1224 47899999987665567789999999999999999
Q ss_pred ecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC
Q 005508 500 HGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 564 (693)
Q Consensus 500 HgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 564 (693)
|+..+.....+ .||+++.++++.+ ++|||++|||.|.+|+.+++.. +|||+||+|+.+...
T Consensus 173 ~~i~~~g~~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~-~G~~gvivg~al~~~ 233 (253)
T PRK02083 173 TSMDRDGTKNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTE-GGADAALAASIFHFG 233 (253)
T ss_pred cCCcCCCCCCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHh-CCccEEeEhHHHHcC
Confidence 88665444444 4899999999988 6999999999999999998875 799999999998754
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-10 Score=122.61 Aligned_cols=192 Identities=15% Similarity=0.134 Sum_probs=135.8
Q ss_pred CCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhhh-hhhccCCCCeEEEEec-CCCHHHHHH
Q 005508 334 KLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA-LLRRHSSEDLFGVQIC-GAYPDTLAR 411 (693)
Q Consensus 334 ~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~-ll~~h~~e~p~gvQL~-G~~pe~~~~ 411 (693)
.++.|.-|++.++|++..|..+-++++++|.--+.--| ...++. +.+.. ....+.+-++ |..++.+.+
T Consensus 32 ~~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k~---------~~e~~~~~~r~~-~~~~l~v~~~vg~~~~~~~~ 101 (326)
T PRK05458 32 GPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHRF---------DPEARIPFIKDM-HEQGLIASISVGVKDDEYDF 101 (326)
T ss_pred CCcEecCcEEEecccchhHHHHHHHHHHcCCEEEEecC---------CHHHHHHHHHhc-cccccEEEEEecCCHHHHHH
Confidence 46788999999999999999999999888643222112 222222 22222 2222233333 456888888
Q ss_pred HHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEE-ecCCCCCChhHHHHHHHHH
Q 005508 412 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIK-VRTGYFEGKNRIDSLIADI 489 (693)
Q Consensus 412 AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVK-iR~G~~d~~~~~~~la~~L 489 (693)
+.+++...+|+|.|-|.+.-+ +...+.++|+.+++.+ +.||.++ +.+ .+-+..|
T Consensus 102 ~~~Lv~ag~~~d~i~iD~a~g---------------h~~~~~e~I~~ir~~~p~~~vi~g~V~t---------~e~a~~l 157 (326)
T PRK05458 102 VDQLAAEGLTPEYITIDIAHG---------------HSDSVINMIQHIKKHLPETFVIAGNVGT---------PEAVREL 157 (326)
T ss_pred HHHHHhcCCCCCEEEEECCCC---------------chHHHHHHHHHHHhhCCCCeEEEEecCC---------HHHHHHH
Confidence 888875212449999976442 3466788899999888 5888886 442 4567888
Q ss_pred HHcCCCEEEEec---cc---ccCccCCCccHHH--HHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHH
Q 005508 490 GTWGASAVTVHG---RT---RQQRYSKLADWDY--IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 490 ~eaG~daItVHg---Rt---r~q~ytg~Adw~~--I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 561 (693)
.++|+|+|.|++ |. +...-.+.++|.. +.++++.+ ++|||++|+|.++.|+.++|. .|||+||+|+.+
T Consensus 158 ~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa--~GA~aV~vG~~~ 233 (326)
T PRK05458 158 ENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIR--FGATMVMIGSLF 233 (326)
T ss_pred HHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHH--hCCCEEEechhh
Confidence 899999998873 22 1112234578875 89999887 699999999999999999998 499999999888
Q ss_pred hh
Q 005508 562 LI 563 (693)
Q Consensus 562 L~ 563 (693)
+.
T Consensus 234 ~~ 235 (326)
T PRK05458 234 AG 235 (326)
T ss_pred cC
Confidence 74
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=124.88 Aligned_cols=213 Identities=14% Similarity=0.076 Sum_probs=148.1
Q ss_pred cccCCccccCcEEEccCCCC------CcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCC
Q 005508 331 REKKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA 404 (693)
Q Consensus 331 ~ek~~l~lknriiLAPMt~v------~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~ 404 (693)
.+.-+..+.-++++|||... +++..-+.|...|.-+++|-+.+.. ..+ +.......+...||+-.
T Consensus 64 t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s------~Ee---i~~~~~~~~~wfQlY~~ 134 (351)
T cd04737 64 TELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTS------LEE---IAKASNGGPKWFQLYMS 134 (351)
T ss_pred eEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCC------HHH---HHHhcCCCCeEEEEeec
Confidence 34456677889999999643 3466777777888888776653221 112 12222244788999864
Q ss_pred -CHHHHHHHHHHHhhhCCCcEEEEcCCCCCccccc----CC------------------cccccc-----CChHHHHHHH
Q 005508 405 -YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN----KG------------------AGSCLL-----TKPMRMKGII 456 (693)
Q Consensus 405 -~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k----~G------------------~GsaLl-----~rp~~l~eIV 456 (693)
+.+......+++. .+|+..|=|....|..-.+. .+ .|..+. -++.+.-+.|
T Consensus 135 ~d~~~~~~ll~rA~-~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 213 (351)
T cd04737 135 KDDGFNRSLLDRAK-AAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADI 213 (351)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHH
Confidence 5555556666776 67999988887765421110 00 000000 0123344677
Q ss_pred HHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEE--ecccccCccCCCccHHHHHHHHHHcCCCceEEEeC
Q 005508 457 EATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV--HGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 534 (693)
Q Consensus 457 ~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItV--HgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG 534 (693)
+.+++.+++||.||- .. ..+.+..+.++|+|+|+| ||+ .|.+.+++.|+.+.++++.+..++|||++|
T Consensus 214 ~~lr~~~~~PvivKg---v~-----~~~dA~~a~~~G~d~I~vsnhGG--r~ld~~~~~~~~l~~i~~a~~~~i~vi~dG 283 (351)
T cd04737 214 EFIAKISGLPVIVKG---IQ-----SPEDADVAINAGADGIWVSNHGG--RQLDGGPASFDSLPEIAEAVNHRVPIIFDS 283 (351)
T ss_pred HHHHHHhCCcEEEec---CC-----CHHHHHHHHHcCCCEEEEeCCCC--ccCCCCchHHHHHHHHHHHhCCCCeEEEEC
Confidence 888888899999993 21 246778899999999999 765 456678888999999998885469999999
Q ss_pred CCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 535 DIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 535 dI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
||.+..|+.++|. .|||+|||||++|...
T Consensus 284 GIr~g~Di~kaLa--lGA~~V~iGr~~l~~l 312 (351)
T cd04737 284 GVRRGEHVFKALA--SGADAVAVGRPVLYGL 312 (351)
T ss_pred CCCCHHHHHHHHH--cCCCEEEECHHHHHHH
Confidence 9999999999998 6999999999888643
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.8e-10 Score=119.83 Aligned_cols=216 Identities=13% Similarity=0.085 Sum_probs=146.5
Q ss_pred ccCCccccCcEEEccCCCCC------cHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEec-CC
Q 005508 332 EKKLIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQIC-GA 404 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~v~------dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~-G~ 404 (693)
+.-+..+.-++++|||+..+ .+..-+.|.+.|..++++-+.+. ...+ +.+....+.++.+||. ..
T Consensus 57 ~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~------s~e~--v~~~~~~~~~~w~Qly~~~ 128 (344)
T cd02922 57 TILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASC------SLEE--IVDARPPDQPLFFQLYVNK 128 (344)
T ss_pred EECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccC------CHHH--HHHhcCCCCcEEEEEeecC
Confidence 34456778899999998433 34666677788888887665433 1111 1222233467889997 45
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccc----cCCc-------------------cccc---cCChHHHHHHHHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVV----NKGA-------------------GSCL---LTKPMRMKGIIEA 458 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~----k~G~-------------------GsaL---l~rp~~l~eIV~a 458 (693)
+.+...+..++++ .+|+++|=|++..|..-.+ +.|+ +... .-++....+.|+.
T Consensus 129 d~~~~~~l~~ra~-~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 207 (344)
T cd02922 129 DRTKTEELLKRAE-KLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKW 207 (344)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHH
Confidence 6677777777776 6899999999888843111 0000 1111 1134455678889
Q ss_pred hccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHH---cCCCceEEEeCC
Q 005508 459 TSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARK---ASDDLQVLGNGD 535 (693)
Q Consensus 459 v~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~---~~~~IPVIgNGd 535 (693)
+++.+++||.|| |.. ..+-+..+.++|+++|+|.+.-..+.-....-+..+.++++. +..++|||+.||
T Consensus 208 l~~~~~~PvivK---gv~-----~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GG 279 (344)
T cd02922 208 LRKHTKLPIVLK---GVQ-----TVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGG 279 (344)
T ss_pred HHHhcCCcEEEE---cCC-----CHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 998899999999 332 256678889999999999653322222233345566666653 333699999999
Q ss_pred CCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 536 IYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 536 I~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
|.+..|+.++|. -|||+|+|||++|..+-
T Consensus 280 Ir~G~Dv~kala--LGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 280 VRRGTDVLKALC--LGAKAVGLGRPFLYALS 308 (344)
T ss_pred CCCHHHHHHHHH--cCCCEEEECHHHHHHHh
Confidence 999999999998 59999999999998663
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-10 Score=121.89 Aligned_cols=168 Identities=12% Similarity=0.020 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEcCC---------CCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCC
Q 005508 406 PDTLARTVELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTG 474 (693)
Q Consensus 406 pe~~~~AA~~~~~~aG~D~IDLN~G---------CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G 474 (693)
.|-++.||..+. +||||+||||-. .|..+-+++.||+++.+|-+++.+|+.+|++++ ..++.+-+.++
T Consensus 173 ~Drfv~Aak~~~-e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~ 251 (400)
T KOG0134|consen 173 VDRFVYAAKAAY-ECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTN 251 (400)
T ss_pred HHHHHHHHHHHH-hcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCch
Confidence 477888888886 799999999954 488888999999999999999999999999988 33444433422
Q ss_pred ----CCCChhHHHHHHHHHHHcCCCEEEEecccc-------cCccCCCccHH----HHHHHHHHcCCCceEEEeCCCCCH
Q 005508 475 ----YFEGKNRIDSLIADIGTWGASAVTVHGRTR-------QQRYSKLADWD----YIYQCARKASDDLQVLGNGDIYSY 539 (693)
Q Consensus 475 ----~~d~~~~~~~la~~L~eaG~daItVHgRtr-------~q~ytg~Adw~----~I~~i~~~~~~~IPVIgNGdI~s~ 539 (693)
+-...+++..++..+++-|++.+-+.|++. ++|.+..+.|. +...++.... ..-|.++|+.++.
T Consensus 252 ~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~k-gt~v~a~g~~~t~ 330 (400)
T KOG0134|consen 252 EFQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFK-GTVVYAGGGGRTR 330 (400)
T ss_pred hhhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhc-CcEEEecCCccCH
Confidence 112345677888999999999666665542 33444344444 4444554552 3445578899999
Q ss_pred HHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccC
Q 005508 540 LDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRH 576 (693)
Q Consensus 540 eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~ 576 (693)
+.+.++++. ...|+|..||.++.||+|..+++.+..
T Consensus 331 ~~~~eav~~-~~T~~ig~GR~f~anPDLp~rl~~~~~ 366 (400)
T KOG0134|consen 331 EAMVEAVKS-GRTDLIGYGRPFLANPDLPKRLLNGLP 366 (400)
T ss_pred HHHHHHHhc-CCceeEEecchhccCCchhHHHHhCCC
Confidence 999999997 889999999999999999999998764
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-08 Score=108.82 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=135.4
Q ss_pred cCCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhhh-hhhccCCCC-eEEEEecCCCHHHHH
Q 005508 333 KKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA-LLRRHSSED-LFGVQICGAYPDTLA 410 (693)
Q Consensus 333 k~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~-ll~~h~~e~-p~gvQL~G~~pe~~~ 410 (693)
..++.|.-|++.+.|+++.|..+-++++++|.--+.-+| ...+|. .++...... ++++.+ |..++++.
T Consensus 28 ~~~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~---------~~E~~~sfvrk~k~~~L~v~~Sv-G~t~e~~~ 97 (321)
T TIGR01306 28 LGKHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHRF---------DEESRIPFIKDMQERGLFASISV-GVKACEYE 97 (321)
T ss_pred ECCcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEecC---------CHHHHHHHHHhccccccEEEEEc-CCCHHHHH
Confidence 347889999999999999999999999998754443332 233443 233332222 223333 67889999
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHH
Q 005508 411 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 490 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ 490 (693)
+++.++......|.|=|-.. .| +...+.+.|+.+++.+..|+.++=-.+ ..+.++.|.
T Consensus 98 r~~~lv~a~~~~d~i~~D~a--------hg-------~s~~~~~~i~~i~~~~p~~~vi~GnV~-------t~e~a~~l~ 155 (321)
T TIGR01306 98 FVTQLAEEALTPEYITIDIA--------HG-------HSNSVINMIKHIKTHLPDSFVIAGNVG-------TPEAVRELE 155 (321)
T ss_pred HHHHHHhcCCCCCEEEEeCc--------cC-------chHHHHHHHHHHHHhCCCCEEEEecCC-------CHHHHHHHH
Confidence 99988763112576655321 12 356788899999988766644432222 357888999
Q ss_pred HcCCCEEEEe---cc---cccCccCCCccHH--HHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 491 TWGASAVTVH---GR---TRQQRYSKLADWD--YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 491 eaG~daItVH---gR---tr~q~ytg~Adw~--~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
++||++|.|+ || |+...-.+..+|. .|.+|++.+ ++|||+.|||.+..|+.++|. .|||+||+||.+-
T Consensus 156 ~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa--~GAd~Vmig~~~a 231 (321)
T TIGR01306 156 NAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIR--FGASMVMIGSLFA 231 (321)
T ss_pred HcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHH--cCCCEEeechhhc
Confidence 9999999998 44 2333222334565 889999887 799999999999999999998 5999999997665
Q ss_pred h
Q 005508 563 I 563 (693)
Q Consensus 563 ~ 563 (693)
.
T Consensus 232 g 232 (321)
T TIGR01306 232 G 232 (321)
T ss_pred C
Confidence 3
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=112.29 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+..++++.+++.|++.|+||.+++.+.+. ..+|+.|+++++.+ ++||+++|||.|.+|+.+++. .||++|+||++
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~-~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~--~Ga~~Viigt~ 105 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGR-DTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLR--AGADKVSINSA 105 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccC-cchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHH--cCCCEEEEChh
Confidence 57889999999999999999999877665 58999999999998 799999999999999999887 68999999999
Q ss_pred HhhCCCchhHHHhc
Q 005508 561 ALIKPWIFTEIKEQ 574 (693)
Q Consensus 561 aL~nPwiF~eIke~ 574 (693)
++.+|++|.++.+.
T Consensus 106 ~l~~p~~~~ei~~~ 119 (253)
T PRK02083 106 AVANPELISEAADR 119 (253)
T ss_pred HhhCcHHHHHHHHH
Confidence 99999999999874
|
|
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=106.83 Aligned_cols=226 Identities=15% Similarity=0.137 Sum_probs=147.9
Q ss_pred cCCccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCC-h--------------------hh-----hh
Q 005508 333 KKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ-A--------------------SE-----WA 386 (693)
Q Consensus 333 k~~l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~-~--------------------~e-----~~ 386 (693)
.-+-.|.|++.+|.-..-+....-.|.. .|++++.+. +++++-|-. + ++ ..
T Consensus 88 ~~g~~f~NPiglAAGfdk~~eaidgL~~-~gfG~ieig--SvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~ 164 (398)
T KOG1436|consen 88 VLGRKFSNPIGLAAGFDKNAEAIDGLAN-SGFGFIEIG--SVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQ 164 (398)
T ss_pred HhhhhccCchhhhhccCcchHHHHHHHh-CCCceEEec--ccccCCCCCCCCCceEecccccchhhccCCCcccHHHHHH
Confidence 4455789999999876666666666664 788877544 444443321 1 10 00
Q ss_pred hh------hccCCCCeEEEEecCCC--HH---HHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHH
Q 005508 387 LL------RRHSSEDLFGVQICGAY--PD---TLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455 (693)
Q Consensus 387 ll------~~h~~e~p~gvQL~G~~--pe---~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eI 455 (693)
.+ +..+.-.+++|.|.-+. .+ ++++-.+...+ -.|.+.||..||..- |---|+.-..+.+.
T Consensus 165 rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~--~adylviNvSsPNtp------Glr~lq~k~~L~~l 236 (398)
T KOG1436|consen 165 RLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGP--FADYLVINVSSPNTP------GLRSLQKKSDLRKL 236 (398)
T ss_pred HHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhccc--ccceEEEeccCCCCc------chhhhhhHHHHHHH
Confidence 01 11223345778776442 33 44444443322 258999999999853 22233333344444
Q ss_pred HHHhccc-------cccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccc--------------cCccCCC---
Q 005508 456 IEATSGT-------VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR--------------QQRYSKL--- 511 (693)
Q Consensus 456 V~av~~~-------v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr--------------~q~ytg~--- 511 (693)
+..+..+ ...||.+||-... ...+..+++..+.+.++|.+++.+-|- .++.+|+
T Consensus 237 l~~v~~a~~~~~~~~~~pvl~kiapDL--~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk 314 (398)
T KOG1436|consen 237 LTKVVQARDKLPLGKKPPVLVKIAPDL--SEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLK 314 (398)
T ss_pred HHHHHHHHhccccCCCCceEEEeccch--hHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccc
Confidence 4444332 1459999998744 335677888888999999999877541 1223333
Q ss_pred -ccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh-CCCchhHHHh
Q 005508 512 -ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKE 573 (693)
Q Consensus 512 -Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~-nPwiF~eIke 573 (693)
...+.|+++...+...|||||+|||.|..||.+.+. .||..|.|+.++-. -|-||.+|+.
T Consensus 315 ~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~Ekir--aGASlvQlyTal~yeGp~i~~kIk~ 376 (398)
T KOG1436|consen 315 PISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIR--AGASLVQLYTALVYEGPAIIEKIKR 376 (398)
T ss_pred hhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHh--cCchHHHHHHHHhhcCchhHHHHHH
Confidence 356778888888766899999999999999999987 69999999999865 5999999975
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-09 Score=109.64 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
.+..++++.+++.|++.|++|.+++. .+.+..++++++++++.+ ++||+++|||.|.+|+.+++. .|||+|++||
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~--~G~~~v~ig~ 101 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITAS-SEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLR--AGADKVSINS 101 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcc-cccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH--cCCceEEECc
Confidence 36789999999999999999999975 345678999999999998 699999999999999999887 5899999999
Q ss_pred HHhhCCCchhHHHhc
Q 005508 560 GALIKPWIFTEIKEQ 574 (693)
Q Consensus 560 gaL~nPwiF~eIke~ 574 (693)
+++.+|++|.++.+.
T Consensus 102 ~~~~~p~~~~~i~~~ 116 (243)
T cd04731 102 AAVENPELIREIAKR 116 (243)
T ss_pred hhhhChHHHHHHHHH
Confidence 999999999999763
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=103.29 Aligned_cols=153 Identities=18% Similarity=0.289 Sum_probs=118.9
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC-
Q 005508 395 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT- 473 (693)
Q Consensus 395 ~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~- 473 (693)
...-|||.|.- .++..+..++ .+|++.|=| |+.-..+|+++.++++..-..+ -|.+-.|.
T Consensus 74 ~~~~vQvGGGI-Rs~~~v~~ll--~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~ri--vv~lD~r~g 134 (241)
T COG0106 74 TDVPVQVGGGI-RSLEDVEALL--DAGVARVII--------------GTAAVKNPDLVKELCEEYGDRI--VVALDARDG 134 (241)
T ss_pred CCCCEEeeCCc-CCHHHHHHHH--HCCCCEEEE--------------ecceecCHHHHHHHHHHcCCcE--EEEEEccCC
Confidence 34568997653 3343444444 368888776 5566899999999999886443 33333343
Q ss_pred -----CCCCChh-HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh
Q 005508 474 -----GYFEGKN-RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 547 (693)
Q Consensus 474 -----G~~d~~~-~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~ 547 (693)
||.+... ++.++++++++.|+..|.+|.-++++..+| .|++.+.++++.+ ++|||++|||.|.+|+..+..
T Consensus 135 ~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G-~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~ 211 (241)
T COG0106 135 KVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSG-PNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKE 211 (241)
T ss_pred ccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCC-CCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHh
Confidence 7877655 789999999999999999999999999888 7999999999999 799999999999999988654
Q ss_pred cCCCcCEEEEcHHHhhCCCchhH
Q 005508 548 DCPELASCMIARGALIKPWIFTE 570 (693)
Q Consensus 548 ~~~gaDgVMIGRgaL~nPwiF~e 570 (693)
. .|+.||.|||+++..=.-+.+
T Consensus 212 ~-~G~~GvIvG~ALy~g~~~l~e 233 (241)
T COG0106 212 L-SGVEGVIVGRALYEGKFTLEE 233 (241)
T ss_pred c-CCCcEEEEehHHhcCCCCHHH
Confidence 2 289999999999976543333
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-07 Score=101.84 Aligned_cols=211 Identities=15% Similarity=0.076 Sum_probs=143.7
Q ss_pred ccCCccccCcEEEccCCCC------CcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCC-
Q 005508 332 EKKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA- 404 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~v------~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~- 404 (693)
++-+..+.-++++||+... +++..-+.|.+.|.-++++-+.+.. ..+ +.....+.++-.||.-.
T Consensus 78 ~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~s------lEe---Ia~~~~~~~~wfQlY~~~ 148 (383)
T cd03332 78 ELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSS------IED---VAAAAGDAPRWFQLYWPK 148 (383)
T ss_pred eeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCC------HHH---HHhhcCCCCcEEEeeCCC
Confidence 4456678889999998643 3577888888899988887765421 112 22222345788999875
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCccccc----CCc---------------------------------------
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN----KGA--------------------------------------- 441 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k----~G~--------------------------------------- 441 (693)
+.+...+..++++ .+||.+|=|..=.|+.-.+. .++
T Consensus 149 dr~~~~~ll~RA~-~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (383)
T cd03332 149 DDDLTESLLRRAE-KAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAA 227 (383)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchh
Confidence 5666667777776 68999988864333211000 000
Q ss_pred ccccc---CChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHH
Q 005508 442 GSCLL---TKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIY 518 (693)
Q Consensus 442 GsaLl---~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~ 518 (693)
++.++ -++.+--+-|+.+++.++.||.|| |+. ..+-+..+.+.|+|+|.|.+.-..|.-.+++-.+.+.
T Consensus 228 ~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivK---gV~-----~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ 299 (383)
T cd03332 228 VARFVSVFSGPSLTWEDLAFLREWTDLPIVLK---GIL-----HPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALP 299 (383)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEe---cCC-----CHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHH
Confidence 00000 122222356777777789999999 321 1355677888999999995433333444666678889
Q ss_pred HHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 519 QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 519 ~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
++++.+..++|||+.|||.+..|+.++|. -|||+|+|||.+|
T Consensus 300 ei~~~~~~~~~vi~dGGIr~G~Dv~KALa--LGA~~v~iGr~~l 341 (383)
T cd03332 300 EIVEAVGDRLTVLFDSGVRTGADIMKALA--LGAKAVLIGRPYA 341 (383)
T ss_pred HHHHHhcCCCeEEEeCCcCcHHHHHHHHH--cCCCEEEEcHHHH
Confidence 99888754699999999999999999997 5999999999998
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.1e-08 Score=99.29 Aligned_cols=123 Identities=13% Similarity=0.169 Sum_probs=91.6
Q ss_pred hCCCcEEEEcCCCCCcccccCCccccccCChH--HHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCE
Q 005508 419 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPM--RMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASA 496 (693)
Q Consensus 419 ~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~--~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~da 496 (693)
++|+|+|-++... +.+|. .+.++++.+++..++|+.+.+.+ .+.+..+.++|+++
T Consensus 90 ~aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t---------~~ea~~a~~~G~d~ 146 (219)
T cd04729 90 AAGADIIALDATD--------------RPRPDGETLAELIKRIHEEYNCLLMADIST---------LEEALNAAKLGFDI 146 (219)
T ss_pred HcCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHHhCCeEEEECCC---------HHHHHHHHHcCCCE
Confidence 5799999887522 11232 67788877776556888885532 23457788899999
Q ss_pred EEE--ecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchh
Q 005508 497 VTV--HGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 569 (693)
Q Consensus 497 ItV--HgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~ 569 (693)
|.+ ||++..+......+|++++++++.+ ++||+++|||.+++++.+++. .|||+|+||+++ .+++.+.
T Consensus 147 i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~~~l~--~GadgV~vGsal-~~~~~~~ 216 (219)
T cd04729 147 IGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALE--LGADAVVVGSAI-TRPEHIT 216 (219)
T ss_pred EEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHH--CCCCEEEEchHH-hChHhHh
Confidence 965 5666544444556899999999988 699999999999999999887 479999999985 4554444
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-07 Score=99.85 Aligned_cols=242 Identities=15% Similarity=0.082 Sum_probs=156.4
Q ss_pred cccCCccccCcEEEccCCCC------CcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecC-
Q 005508 331 REKKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG- 403 (693)
Q Consensus 331 ~ek~~l~lknriiLAPMt~v------~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G- 403 (693)
.+.-+..+.-++++||+... +.+..-+.+.+.|.-++.+-+.+.. ..+ +... .+.++..||+-
T Consensus 64 t~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~s------lEe---va~~-~~~~~wfQlY~~ 133 (364)
T PLN02535 64 TTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCT------VEE---VASS-CNAVRFLQLYVY 133 (364)
T ss_pred eEECCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCcccCC------HHH---HHhc-CCCCeEEEEecc
Confidence 34456677889999998642 3467777777888888776653221 122 1122 24578899986
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccc----cCCc--------------------ccc---c---cCChHHHH
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVV----NKGA--------------------GSC---L---LTKPMRMK 453 (693)
Q Consensus 404 ~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~----k~G~--------------------Gsa---L---l~rp~~l~ 453 (693)
.+.+......++++ .+|+.+|=|..=+|+.-.+ +.|+ ++. . +-++.+--
T Consensus 134 ~dr~~~~~ll~RA~-~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW 212 (364)
T PLN02535 134 KRRDIAAQLVQRAE-KNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSW 212 (364)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCH
Confidence 45676777777877 6899998887766652111 0010 000 0 01233334
Q ss_pred HHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEe
Q 005508 454 GIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGN 533 (693)
Q Consensus 454 eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgN 533 (693)
+-|+.+++.++.||.||-=+. .+-+..+.++|+|+|.|.+.-..|.-.+++-...+.++++.+...+|||+.
T Consensus 213 ~~i~~lr~~~~~PvivKgV~~--------~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~d 284 (364)
T PLN02535 213 KDIEWLRSITNLPILIKGVLT--------REDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLD 284 (364)
T ss_pred HHHHHHHhccCCCEEEecCCC--------HHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEee
Confidence 667888888899999993332 133778889999999995432222222344567788888776446999999
Q ss_pred CCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 005508 534 GDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601 (693)
Q Consensus 534 GdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gs 601 (693)
|||.+..|+.++|. -|||+|+|||.+|..+...-+ + ....-+++++.-++..+...|.
T Consensus 285 GGIr~g~Dv~KALa--lGA~aV~vGr~~l~~l~~~g~--~------gv~~~l~~l~~el~~~m~l~G~ 342 (364)
T PLN02535 285 GGVRRGTDVFKALA--LGAQAVLVGRPVIYGLAAKGE--D------GVRKVIEMLKDELEITMALSGC 342 (364)
T ss_pred CCCCCHHHHHHHHH--cCCCEEEECHHHHhhhhhccH--H------HHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999997 599999999999876543221 1 1223455556556666666664
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-07 Score=100.85 Aligned_cols=212 Identities=14% Similarity=0.093 Sum_probs=142.0
Q ss_pred ccccCCccccCcEEEccCCCCC------cHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecC
Q 005508 330 SREKKLIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG 403 (693)
Q Consensus 330 p~ek~~l~lknriiLAPMt~v~------dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G 403 (693)
..++-+..+.-++++|||++.+ +...-+.|.+.|.-++++-+.+..- .+. ... ...+...||.-
T Consensus 49 st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~------e~i--a~~--~~~~~~~Qly~ 118 (356)
T PF01070_consen 49 STTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSASL------EEI--AAA--SGGPLWFQLYP 118 (356)
T ss_dssp SEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCH------HHH--HHH--CTSEEEEEEEG
T ss_pred CeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCCH------HHH--Hhh--ccCCeEEEEEE
Confidence 4566788899999999998643 4677777888898877666543321 111 111 22788899964
Q ss_pred -CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCccccc----CCc-----------------------------------c-
Q 005508 404 -AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN----KGA-----------------------------------G- 442 (693)
Q Consensus 404 -~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k----~G~-----------------------------------G- 442 (693)
.+.+...+..++++ .+|+++|=|+.=+|..-.+. .|+ +
T Consensus 119 ~~d~~~~~~~i~rAe-~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 197 (356)
T PF01070_consen 119 PRDRELTRDLIRRAE-AAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNG 197 (356)
T ss_dssp BSSHHHHHHHHHHHH-HTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTST
T ss_pred ecCHHHHHHHHHHhh-cCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcc
Confidence 46777777777876 68999888865433210000 000 0
Q ss_pred ---cccc---CChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHH
Q 005508 443 ---SCLL---TKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDY 516 (693)
Q Consensus 443 ---saLl---~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~ 516 (693)
..+. -++...-+-|+.+++.+++||.||==+. .+-+.++.+.||++|.|.+--..|.-.+++-.+.
T Consensus 198 ~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~--------~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~ 269 (356)
T PF01070_consen 198 AAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLS--------PEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDA 269 (356)
T ss_dssp CHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-S--------HHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHH
T ss_pred hhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEeccc--------HHHHHHHHhcCCCEEEecCCCcccCccccccccc
Confidence 0010 1333444557888888999999995442 3456788999999999965433344456677788
Q ss_pred HHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 517 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 517 I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
+.++++.++.++|||+.|||.+..|+.+.|. -|||+|+|||..|
T Consensus 270 L~~i~~~~~~~~~i~~dgGir~g~Dv~kala--LGA~~v~igr~~l 313 (356)
T PF01070_consen 270 LPEIRAAVGDDIPIIADGGIRRGLDVAKALA--LGADAVGIGRPFL 313 (356)
T ss_dssp HHHHHHHHTTSSEEEEESS--SHHHHHHHHH--TT-SEEEESHHHH
T ss_pred cHHHHhhhcCCeeEEEeCCCCCHHHHHHHHH--cCCCeEEEccHHH
Confidence 8999988866799999999999999999998 5999999999887
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-08 Score=100.77 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccC-CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYS-KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~yt-g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
.+..++|+.+.+.|++.|+||.+++. +. ...+|++++++++.+ ++||+++|+|.+++++++++. .|||.||||
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~--~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~--~Gad~vvig 102 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGA--KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLD--LGVSRVIIG 102 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcc--ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHH--cCCCEEEEC
Confidence 36789999999999999999988763 33 457899999999998 699999999999999999886 689999999
Q ss_pred HHHhhCCCchhHHHhc
Q 005508 559 RGALIKPWIFTEIKEQ 574 (693)
Q Consensus 559 RgaL~nPwiF~eIke~ 574 (693)
+.++.+|+++.++.+.
T Consensus 103 s~~l~dp~~~~~i~~~ 118 (234)
T cd04732 103 TAAVKNPELVKELLKE 118 (234)
T ss_pred chHHhChHHHHHHHHH
Confidence 9999999999998875
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-07 Score=99.87 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=115.1
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEE
Q 005508 391 HSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITI 469 (693)
Q Consensus 391 h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtV 469 (693)
.....++..|+++.+++.+.+.++.+. ..||+.|.||+|. +++...++|++|++++ +++|.|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~v 182 (316)
T cd03319 120 APRPLETDYTISIDTPEAMAAAAKKAA-KRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRV 182 (316)
T ss_pred CCCCceeEEEEeCCCHHHHHHHHHHHH-HcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEE
Confidence 344567778999999999988888776 4699999999863 2355678888888877 588999
Q ss_pred EecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 005508 470 KVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 549 (693)
Q Consensus 470 KiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 549 (693)
+.+.+|+. .++.++++.|++.|+.+| +|.+. +.+|+.++++++.. ++||++++.+++++++.++++.
T Consensus 183 D~n~~~~~--~~A~~~~~~l~~~~l~~i-------EeP~~-~~d~~~~~~L~~~~--~ipIa~~E~~~~~~~~~~~~~~- 249 (316)
T cd03319 183 DANQGWTP--EEAVELLRELAELGVELI-------EQPVP-AGDDDGLAYLRDKS--PLPIMADESCFSAADAARLAGG- 249 (316)
T ss_pred eCCCCcCH--HHHHHHHHHHHhcCCCEE-------ECCCC-CCCHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHhc-
Confidence 99999864 689999999999999888 55554 57899999999987 6999999999999999999987
Q ss_pred CCcCEEEEc
Q 005508 550 PELASCMIA 558 (693)
Q Consensus 550 ~gaDgVMIG 558 (693)
.++|.|++-
T Consensus 250 ~~~d~v~~~ 258 (316)
T cd03319 250 GAYDGINIK 258 (316)
T ss_pred CCCCEEEEe
Confidence 889999864
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-07 Score=97.08 Aligned_cols=242 Identities=13% Similarity=0.062 Sum_probs=159.6
Q ss_pred cccCCccccCcEEEccCCCC------CcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecC-
Q 005508 331 REKKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG- 403 (693)
Q Consensus 331 ~ek~~l~lknriiLAPMt~v------~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G- 403 (693)
.++-+..+.-++++||+... +++..-+.|.+.|.-++.|-+.+.. ..+ +... ...+.-.||+-
T Consensus 61 t~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~s------lEe---Ia~a-~~~~~wfQLY~~ 130 (366)
T PLN02979 61 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSS------VEE---VAST-GPGIRFFQLYVY 130 (366)
T ss_pred eEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCC------HHH---HHhc-cCCCeEEEEeec
Confidence 34556677889999998643 3567778888888888876643321 122 2222 23468899985
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccc----cCCc-----------------------cccc------cCChH
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVV----NKGA-----------------------GSCL------LTKPM 450 (693)
Q Consensus 404 ~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~----k~G~-----------------------GsaL------l~rp~ 450 (693)
.+.+...+..++++ .+|+.+|=|..-.|..-.+ +.|+ ++++ .-++.
T Consensus 131 ~Dr~~~~~ll~RA~-~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (366)
T PLN02979 131 KNRNVVEQLVRRAE-RAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRT 209 (366)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCC
Confidence 45666666677776 6899999887766654111 1010 0000 00222
Q ss_pred HHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceE
Q 005508 451 RMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQV 530 (693)
Q Consensus 451 ~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPV 530 (693)
+.=+-|+.+++.+++||.||-=.. .+-|.++.++|||+|.|.+.-..|....++-.+.+.++++.+..++||
T Consensus 210 ltW~dl~wlr~~~~~PvivKgV~~--------~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~V 281 (366)
T PLN02979 210 LSWKDVQWLQTITKLPILVKGVLT--------GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPV 281 (366)
T ss_pred CCHHHHHHHHhccCCCEEeecCCC--------HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeE
Confidence 223557888888899999985431 356778899999999996654334444455677788888776446999
Q ss_pred EEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 005508 531 LGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601 (693)
Q Consensus 531 IgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gs 601 (693)
|+.|||.+..|+.++|. -|||+|+|||.+|.- -...+.. -...-+++++.-+...+...|.
T Consensus 282 i~dGGIr~G~Di~KALA--LGAdaV~iGrp~L~~-----la~~G~~---Gv~~~l~~l~~El~~~m~l~G~ 342 (366)
T PLN02979 282 FLDGGVRRGTDVFKALA--LGASGIFIGRPVVFS-----LAAEGEA---GVRKVLQMLRDEFELTMALSGC 342 (366)
T ss_pred EEeCCcCcHHHHHHHHH--cCCCEEEEcHHHHHH-----HHhcCHH---HHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999997 599999999988732 1111111 1234567777777767766664
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.3e-07 Score=98.71 Aligned_cols=239 Identities=13% Similarity=0.034 Sum_probs=157.9
Q ss_pred ccCCccccCcEEEccCCC------CCcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCC
Q 005508 332 EKKLIDFREKLYLAPLTT------VGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAY 405 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~------v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~ 405 (693)
++-+..+.-++++||+.. -+++..-+.|.+.|.-++.|-+.+..- .+ +... .+.++-.||.-.+
T Consensus 57 tllG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~si------Ee---va~a-~~~~~wfQLY~~~ 126 (361)
T cd04736 57 SLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSI------ED---VARQ-ADGDLWFQLYVVH 126 (361)
T ss_pred eECCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCCH------HH---HHhh-cCCCeEEEEEecC
Confidence 344566778999999843 346788888889999998887764431 12 1112 2346889999887
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEcCCCCCccccc----CCc---------------------------------------c
Q 005508 406 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVN----KGA---------------------------------------G 442 (693)
Q Consensus 406 pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k----~G~---------------------------------------G 442 (693)
.+......++++ .+||.+|=|..=+|+.-.+. .|+ +
T Consensus 127 r~~~~~ll~RA~-~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~ 205 (361)
T cd04736 127 RELAELLVKRAL-AAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDA 205 (361)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccc
Confidence 666666667776 68999998876555421110 000 0
Q ss_pred cc-------c--cCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCcc
Q 005508 443 SC-------L--LTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLAD 513 (693)
Q Consensus 443 sa-------L--l~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Ad 513 (693)
.. + .-++.+.-+.|+.+++.++.||.+| |+. ..+-+..+.++|+|+|.|.+....|....++.
T Consensus 206 ~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV~-----~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~ 277 (361)
T cd04736 206 IDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GIV-----TAEDAKRCIELGADGVILSNHGGRQLDDAIAP 277 (361)
T ss_pred cchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cCC-----CHHHHHHHHHCCcCEEEECCCCcCCCcCCccH
Confidence 00 0 1123344467888888889999998 332 23567788889999998854333333344567
Q ss_pred HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHH
Q 005508 514 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFAR 593 (693)
Q Consensus 514 w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~ 593 (693)
.+.+.++++.+ ++|||+-|+|.+..|+.++|. -|||+|||||++|.-=... +.. -...-+++++.-++
T Consensus 278 ~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALa--LGA~aV~iGr~~l~~la~~-----G~~---gv~~~l~~l~~el~ 345 (361)
T cd04736 278 IEALAEIVAAT--YKPVLIDSGIRRGSDIVKALA--LGANAVLLGRATLYGLAAR-----GEA---GVSEVLRLLKEEID 345 (361)
T ss_pred HHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHH--cCCCEEEECHHHHHHHHhc-----CHH---HHHHHHHHHHHHHH
Confidence 88899999888 699999999999999999997 5999999999987322111 110 01234566666666
Q ss_pred HHHHhhcC
Q 005508 594 FGLEHWGS 601 (693)
Q Consensus 594 ~~le~~gs 601 (693)
..+...|.
T Consensus 346 ~~m~l~G~ 353 (361)
T cd04736 346 RTLALIGC 353 (361)
T ss_pred HHHHHhCC
Confidence 55555553
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-07 Score=87.26 Aligned_cols=148 Identities=14% Similarity=-0.011 Sum_probs=114.2
Q ss_pred CCeEEEEecCCC----HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCE
Q 005508 394 EDLFGVQICGAY----PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPI 467 (693)
Q Consensus 394 e~p~gvQL~G~~----pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPV 467 (693)
..|+++++.+.. .+...+.++.+. ++|+|+|.+.. |.. ..+-.+.+.+.+.++.+.+.+ ++||
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~-~~Gad~i~v~~--~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~pv 116 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAI-DLGADEIDVVI--NIG--------SLKEGDWEEVLEEIAAVVEAADGGLPL 116 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHH-HcCCCEEEEec--cHH--------HHhCCCHHHHHHHHHHHHHHhcCCceE
Confidence 468889998888 788888888887 68999999842 221 111115788888888888874 8999
Q ss_pred EEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh
Q 005508 468 TIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 547 (693)
Q Consensus 468 tVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~ 547 (693)
.++...+..-..+...++++.+.+.|+++|..+... +.+..++..+.++++..+.++||++.||+.+++.+...+.
T Consensus 117 ~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~----~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~ 192 (201)
T cd00945 117 KVILETRGLKTADEIAKAARIAAEAGADFIKTSTGF----GGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIE 192 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCC----CCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHH
Confidence 999998765334567777777889999999876532 2345689999999987743579999999999999999887
Q ss_pred cCCCcCEEEEc
Q 005508 548 DCPELASCMIA 558 (693)
Q Consensus 548 ~~~gaDgVMIG 558 (693)
.|++|+++|
T Consensus 193 --~Ga~g~~~g 201 (201)
T cd00945 193 --AGADGIGTS 201 (201)
T ss_pred --hccceeecC
Confidence 489999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.8e-07 Score=99.04 Aligned_cols=134 Identities=17% Similarity=0.140 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhH
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 403 G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~ 481 (693)
|..++.+.++..++. +|+|.|=|-++-+ +...+.++|+.+++.+ +.+|.++-=.
T Consensus 149 g~~~~~~~~v~~lv~--aGvDvI~iD~a~g---------------~~~~~~~~v~~ik~~~p~~~vi~g~V~-------- 203 (404)
T PRK06843 149 SIDIDTIERVEELVK--AHVDILVIDSAHG---------------HSTRIIELVKKIKTKYPNLDLIAGNIV-------- 203 (404)
T ss_pred eCCHHHHHHHHHHHh--cCCCEEEEECCCC---------------CChhHHHHHHHHHhhCCCCcEEEEecC--------
Confidence 446777777666654 7999988854332 2466788999998887 6777774322
Q ss_pred HHHHHHHHHHcCCCEEEEeccc-------ccCccCCCccHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 005508 482 IDSLIADIGTWGASAVTVHGRT-------RQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 482 ~~~la~~L~eaG~daItVHgRt-------r~q~ytg~Adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaD 553 (693)
+.+-+..|.++|+|+|.+ |-+ |.-.-.+.+++..+..|++.+. .++|||+-|+|.++.|+.++|. .|||
T Consensus 204 T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALa--lGA~ 280 (404)
T PRK06843 204 TKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIA--AGAD 280 (404)
T ss_pred CHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH--cCCC
Confidence 246678888999999986 321 1111124456776655555431 1699999999999999999998 5999
Q ss_pred EEEEcHHHhhC
Q 005508 554 SCMIARGALIK 564 (693)
Q Consensus 554 gVMIGRgaL~n 564 (693)
+||||+.+..-
T Consensus 281 aVmvGs~~agt 291 (404)
T PRK06843 281 SVMIGNLFAGT 291 (404)
T ss_pred EEEEcceeeee
Confidence 99999988763
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-08 Score=101.40 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+..++|+.+++.|++.|+++..++.+. ....+|++++++++.+ .+||++.|||.|.+|+.+++. .||+.|+||+.
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~-~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~--~Ga~~vivgt~ 105 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSE-GRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLR--AGADKVSINTA 105 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccc-cChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHH--cCCCEEEEChh
Confidence 578999999999999999999987654 4557999999999998 699999999999999999887 58999999999
Q ss_pred HhhCCCchhHHHh
Q 005508 561 ALIKPWIFTEIKE 573 (693)
Q Consensus 561 aL~nPwiF~eIke 573 (693)
++.+|+++.++.+
T Consensus 106 ~~~~p~~~~~~~~ 118 (254)
T TIGR00735 106 AVKNPELIYELAD 118 (254)
T ss_pred HhhChHHHHHHHH
Confidence 9999999999975
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-06 Score=96.18 Aligned_cols=241 Identities=15% Similarity=0.133 Sum_probs=154.3
Q ss_pred ccCCccccCcEEEccCCCC------CcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEec-CC
Q 005508 332 EKKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQIC-GA 404 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~v------~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~-G~ 404 (693)
++-+..+.-++++||+... +++..-+.|.+.|.-++.|.+.+.. ..+ +..+ .+.++-.||+ -.
T Consensus 63 ~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~s------lEe---ia~~-~~~~~wfQlY~~~ 132 (381)
T PRK11197 63 TLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCP------IEE---VAPA-IKRPMWFQLYVLR 132 (381)
T ss_pred EECCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcCC------HHH---HHhc-cCCCeEEEEEecC
Confidence 4456677889999998632 4677888888889988877754332 112 2222 2456788996 34
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccc----cCCccc---------cccCCh----------------------
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVV----NKGAGS---------CLLTKP---------------------- 449 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~----k~G~Gs---------aLl~rp---------------------- 449 (693)
+.+......++++ .+||.+|=|..=+|+.-.+ +.|+-. ..+.+|
T Consensus 133 Dr~~~~~li~RA~-~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~ 211 (381)
T PRK11197 133 DRGFMRNALERAK-AAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYL 211 (381)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCccccccccc
Confidence 6677777777887 6899999998777642211 011100 000000
Q ss_pred -------HH------------HHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCC
Q 005508 450 -------MR------------MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSK 510 (693)
Q Consensus 450 -------~~------------l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg 510 (693)
.+ -=+-|+.+++.++.||.||==+. .+-|..+.++||++|.|.+--..|.-..
T Consensus 212 ~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~s--------~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~ 283 (381)
T PRK11197 212 GKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILD--------PEDARDAVRFGADGIVVSNHGGRQLDGV 283 (381)
T ss_pred ccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecCC--------HHHHHHHHhCCCCEEEECCCCCCCCCCc
Confidence 00 00126778888899999985442 3557788889999999854222222223
Q ss_pred CccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHH
Q 005508 511 LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKD 590 (693)
Q Consensus 511 ~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~ 590 (693)
++-.+.+.++++.+..++|||+.|||.+..|+.++|. -|||+|||||.+|.-=. ..+.. .....+++++.
T Consensus 284 ~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa--LGA~~V~iGr~~l~~la-----~~G~~---gv~~~l~~l~~ 353 (381)
T PRK11197 284 LSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA--LGADTVLLGRAFVYALA-----AAGQA---GVANLLDLIEK 353 (381)
T ss_pred ccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH--cCcCceeEhHHHHHHHH-----hccHH---HHHHHHHHHHH
Confidence 3446677777776643699999999999999999997 59999999999873211 11110 12345666666
Q ss_pred HHHHHHHhhcC
Q 005508 591 FARFGLEHWGS 601 (693)
Q Consensus 591 ~~~~~le~~gs 601 (693)
-++..+-..|.
T Consensus 354 El~~~m~l~G~ 364 (381)
T PRK11197 354 EMRVAMTLTGA 364 (381)
T ss_pred HHHHHHHHHCC
Confidence 66666666664
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.67 E-value=3e-06 Score=91.30 Aligned_cols=206 Identities=14% Similarity=0.164 Sum_probs=137.9
Q ss_pred CCCCCcCccccCCccccCcEEEccCCCCCcHHHHHHHHHcCC-CEEEecccccchhccCChhhhh-hhhc-cCC-CCeEE
Q 005508 323 DGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWA-LLRR-HSS-EDLFG 398 (693)
Q Consensus 323 ~~~~~~~p~ek~~l~lknriiLAPMt~v~dlpFRrl~~~~Ga-dl~~TEM~~a~~ll~g~~~e~~-ll~~-h~~-e~p~g 398 (693)
|....|.+..-+++.|.=+++-|.|-|+++..+-....++|. .++ =-+. ...+|. .++. ++. ...+.
T Consensus 29 dl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~i-Hk~~--------~~e~~~~~v~~~~~~~~~~~~ 99 (343)
T TIGR01305 29 ELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAI-HKHY--------SVDEWKAFATNSSPDCLQNVA 99 (343)
T ss_pred eeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEE-eeCC--------CHHHHHHHHHhhcccccceEE
Confidence 344556655556788888999999999999887666666653 333 1111 123343 2222 211 22333
Q ss_pred EEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCC
Q 005508 399 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG 478 (693)
Q Consensus 399 vQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~ 478 (693)
|.+ |-.++++.++..++....++|+|=|... .| +...+.+.|+.+++...-+..+|=-..
T Consensus 100 vsv-G~~~~d~er~~~L~~a~~~~d~iviD~A--------hG-------hs~~~i~~ik~ir~~~p~~~viaGNV~---- 159 (343)
T TIGR01305 100 VSS-GSSDNDLEKMTSILEAVPQLKFICLDVA--------NG-------YSEHFVEFVKLVREAFPEHTIMAGNVV---- 159 (343)
T ss_pred EEe-ccCHHHHHHHHHHHhcCCCCCEEEEECC--------CC-------cHHHHHHHHHHHHhhCCCCeEEEeccc----
Confidence 433 7788999999888863336888777532 12 356788999999998744444433221
Q ss_pred hhHHHHHHHHHHHcCCCEEEEe------cccccCccCCCccHHHHHHHHHHcCC-CceEEEeCCCCCHHHHHHHHhcCCC
Q 005508 479 KNRIDSLIADIGTWGASAVTVH------GRTRQQRYSKLADWDYIYQCARKASD-DLQVLGNGDIYSYLDWNKHKSDCPE 551 (693)
Q Consensus 479 ~~~~~~la~~L~eaG~daItVH------gRtr~q~ytg~Adw~~I~~i~~~~~~-~IPVIgNGdI~s~eDa~~~l~~~~g 551 (693)
+.+-++.|.++|||+|-|- ..||+-.-.+.+-+..+.+|++.+.. .+|||+-|||.+.-|+.++|. .|
T Consensus 160 ---T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA--~G 234 (343)
T TIGR01305 160 ---TGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFG--AG 234 (343)
T ss_pred ---CHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHH--cC
Confidence 2456778888999999875 22343333444678889999887653 699999999999999999998 59
Q ss_pred cCEEEEcHHHhh
Q 005508 552 LASCMIARGALI 563 (693)
Q Consensus 552 aDgVMIGRgaL~ 563 (693)
||+|||| +++.
T Consensus 235 Ad~VMlG-~llA 245 (343)
T TIGR01305 235 ADFVMLG-GMFA 245 (343)
T ss_pred CCEEEEC-Hhhh
Confidence 9999999 4443
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-06 Score=89.59 Aligned_cols=204 Identities=16% Similarity=0.134 Sum_probs=130.9
Q ss_pred ccCCccccCcEEEccCCCCCc-HHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecC-CCHHHH
Q 005508 332 EKKLIDFREKLYLAPLTTVGN-LPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG-AYPDTL 409 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~v~d-lpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G-~~pe~~ 409 (693)
.+++..|..|++|-- ..|.+ .-.+...+.-|++++..-+=-...--.+..+-|.++.. ..-.+...-.| .+.++.
T Consensus 2 ~i~~~~~~SRl~~Gt-gky~s~~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~--~~~~~lpNTaG~~ta~eA 78 (248)
T cd04728 2 TIGGKTFSSRLLLGT-GKYPSPAIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDK--SGYTLLPNTAGCRTAEEA 78 (248)
T ss_pred eECCEEeecceEEec-CCCCCHHHHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhccc--cCCEECCCCCCCCCHHHH
Confidence 356778899998842 23433 34455555679987632111111001223344555421 12222233333 468999
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcc-cc-ccCEEEEecCCCCCChhHHHHHHH
Q 005508 410 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG-TV-DKPITIKVRTGYFEGKNRIDSLIA 487 (693)
Q Consensus 410 ~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~-~v-~iPVtVKiR~G~~d~~~~~~~la~ 487 (693)
++.|+++.+-.|-|+|-|-. ..+ --.|+.++..+.+-.+.+.+ -. -+|+.. ++ ..+++
T Consensus 79 v~~a~lare~~~~~~iKlEV-------i~d--~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~-------dd----~~~ar 138 (248)
T cd04728 79 VRTARLAREALGTDWIKLEV-------IGD--DKTLLPDPIETLKAAEILVKEGFTVLPYCT-------DD----PVLAK 138 (248)
T ss_pred HHHHHHHHHHhCCCeEEEEE-------ecC--ccccccCHHHHHHHHHHHHHCCCEEEEEeC-------CC----HHHHH
Confidence 99999998655778877742 111 12466666655554444422 11 233332 22 57899
Q ss_pred HHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 488 DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 488 ~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
+|++.|+++|..+|...... .+..++++|+.+++.. ++|||..|+|.+++|+.++++ .|||+|++|.++..
T Consensus 139 ~l~~~G~~~vmPlg~pIGsg-~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~Ame--lGAdgVlV~SAIt~ 209 (248)
T cd04728 139 RLEDAGCAAVMPLGSPIGSG-QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAME--LGADAVLLNTAIAK 209 (248)
T ss_pred HHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHH--cCCCEEEEChHhcC
Confidence 99999999998877765544 4667899999999986 799999999999999999987 59999999999873
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-06 Score=94.97 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=82.3
Q ss_pred CChHHHHHHHHHhccccc-cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCc--------cCCCccHHHH
Q 005508 447 TKPMRMKGIIEATSGTVD-KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--------YSKLADWDYI 517 (693)
Q Consensus 447 ~rp~~l~eIV~av~~~v~-iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~--------ytg~Adw~~I 517 (693)
.+++.+.++|+.+++.++ +||.||+-.+. ...++++.++..|+|+|+|.|.-.... +.+.+-...+
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~-----~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L 270 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH-----GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGL 270 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC-----CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHH
Confidence 356678999999999997 99999998753 234778888888899999987632221 1222222334
Q ss_pred HHHHHHc-----CCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 518 YQCARKA-----SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 518 ~~i~~~~-----~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
.++.+.+ ..++|||+.|+|.+..|+.++|. -|||+|.+||++|.
T Consensus 271 ~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala--LGAd~V~ig~~~l~ 319 (392)
T cd02808 271 ARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA--LGADAVGIGTAALI 319 (392)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH--cCCCeeeechHHHH
Confidence 4444432 12599999999999999999998 58999999999995
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.6e-07 Score=93.73 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=113.4
Q ss_pred eEEEEecCC--CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe--
Q 005508 396 LFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV-- 471 (693)
Q Consensus 396 p~gvQL~G~--~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi-- 471 (693)
.+-+|+.|. +.+++ ..++ ..|+|-|=| |+..+.+|+++.++.+.....+-+-|-+|.
T Consensus 74 ~~~v~vgGGIrs~e~~---~~~l--~~Ga~~vvi--------------gT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g 134 (243)
T TIGR01919 74 VVVEELSGGRRDDSSL---RAAL--TGGRARVNG--------------GTAALENPWWAAAVIRYGGDIVAVGLDVLEDG 134 (243)
T ss_pred CCCEEEcCCCCCHHHH---HHHH--HcCCCEEEE--------------CchhhCCHHHHHHHHHHccccEEEEEEEecCC
Confidence 355788764 44433 3333 358888766 466778999999998876443222222331
Q ss_pred ------cCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 005508 472 ------RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 545 (693)
Q Consensus 472 ------R~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 545 (693)
--||.+......++++.+++.|+..|.++.-.+.+...| .|++.+.++++.+ ++|||+.|||.|.+|+.++
T Consensus 135 ~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G-~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l 211 (243)
T TIGR01919 135 EWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGG-PNELLLEVVAART--DAIVAASGGSSLLDDLRAI 211 (243)
T ss_pred ceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCC-cCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHH
Confidence 126766566789999999999999999999999888877 7999999999987 7999999999999999885
Q ss_pred --HhcCCCcCEEEEcHHHhhCCCchhH
Q 005508 546 --KSDCPELASCMIARGALIKPWIFTE 570 (693)
Q Consensus 546 --l~~~~gaDgVMIGRgaL~nPwiF~e 570 (693)
+.. .|++||++|++++..=-=+++
T Consensus 212 ~~l~~-~Gv~gvivg~Al~~g~i~~~~ 237 (243)
T TIGR01919 212 KYLDE-GGVSVAIGGKLLYARFFTLEA 237 (243)
T ss_pred Hhhcc-CCeeEEEEhHHHHcCCCCHHH
Confidence 333 599999999998766533333
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-06 Score=94.90 Aligned_cols=242 Identities=13% Similarity=0.058 Sum_probs=158.9
Q ss_pred cccCCccccCcEEEccCCCC------CcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecC-
Q 005508 331 REKKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG- 403 (693)
Q Consensus 331 ~ek~~l~lknriiLAPMt~v------~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G- 403 (693)
.++-+..+.-++++||+... +++..-+.|.+.|.-+++|-+.+.. ..+ +... ...+.-.||+-
T Consensus 62 t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~s------lEe---va~~-~~~~~wfQlY~~ 131 (367)
T PLN02493 62 TTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSS------VEE---VAST-GPGIRFFQLYVY 131 (367)
T ss_pred eEECCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccCC------HHH---HHhc-CCCCcEEEEeec
Confidence 34556677889999998642 3577778888899888887654322 122 2222 23467889985
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccc----cCCc-----------------------cccc------cCChH
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVV----NKGA-----------------------GSCL------LTKPM 450 (693)
Q Consensus 404 ~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~----k~G~-----------------------GsaL------l~rp~ 450 (693)
.+.+...+..++++ .+||.+|=|..=+|+.-.+ +.++ +..+ .-++.
T Consensus 132 ~Dr~~~~~li~RA~-~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (367)
T PLN02493 132 KNRNVVEQLVRRAE-RAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRT 210 (367)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCC
Confidence 45666666677776 6899998887666543111 0010 0000 00122
Q ss_pred HHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceE
Q 005508 451 RMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQV 530 (693)
Q Consensus 451 ~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPV 530 (693)
+-=+-|+.+++.++.||.||==.. .+-+.++.++||++|.|.+.-..|.-..++-.+.+.++++.+..++||
T Consensus 211 ~tW~di~wlr~~~~~PiivKgV~~--------~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~v 282 (367)
T PLN02493 211 LSWKDVQWLQTITKLPILVKGVLT--------GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPV 282 (367)
T ss_pred CCHHHHHHHHhccCCCEEeecCCC--------HHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeE
Confidence 222446778888899999985431 456778899999999996554334434455677888888876546999
Q ss_pred EEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 005508 531 LGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601 (693)
Q Consensus 531 IgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gs 601 (693)
|+.|||.+..|+.++|. -|||+|+|||.+|.--- ..+.. -...-+++++.-++..+...|.
T Consensus 283 i~dGGIr~G~Dv~KALA--LGA~aV~iGr~~l~~l~-----~~G~~---gv~~~l~~l~~el~~~m~l~G~ 343 (367)
T PLN02493 283 FLDGGVRRGTDVFKALA--LGASGIFIGRPVVFSLA-----AEGEA---GVRKVLQMLRDEFELTMALSGC 343 (367)
T ss_pred EEeCCcCcHHHHHHHHH--cCCCEEEEcHHHHHHHH-----hcCHH---HHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999997 59999999999874211 11111 1234567777777777777774
|
|
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.2e-08 Score=103.67 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=120.8
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHH
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 483 (693)
Q Consensus 404 ~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~ 483 (693)
++-..|.+.+.... ++|.|.+|+|+.||+.. ..+|+|.++-+.|..+.+|-..|++.+.+|+.-|+.+.+.+ ..
T Consensus 215 ynk~~w~el~d~~e-qag~d~lE~nlscphgm-~ergmgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd----~r 288 (471)
T KOG1799|consen 215 YNKKCWMELNDSGE-QAGQDDLETNLSCPHGM-CERGMGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNITD----KR 288 (471)
T ss_pred hhhhhHHHHhhhHH-hhcccchhccCCCCCCC-ccccccceeccChhhhHHHhhhhhhccccccccccCCCccc----cc
Confidence 45566778888876 78999999999999985 56799999999999999999999999999999999987654 33
Q ss_pred HHHHHHHHcCCCEEE---------------------EecccccCccCCCc----cHHHHHHHHHHcCCCceEEEeCCCCC
Q 005508 484 SLIADIGTWGASAVT---------------------VHGRTRQQRYSKLA----DWDYIYQCARKASDDLQVLGNGDIYS 538 (693)
Q Consensus 484 ~la~~L~eaG~daIt---------------------VHgRtr~q~ytg~A----dw~~I~~i~~~~~~~IPVIgNGdI~s 538 (693)
++++.....|+..|+ +.+|+..++|+..| .+..+..|++... ..|+.|.|||-+
T Consensus 289 evar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt 367 (471)
T KOG1799|consen 289 EVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVET 367 (471)
T ss_pred ccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCccc
Confidence 455555555555553 34566667776554 3455556666664 589999999999
Q ss_pred HHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 539 YLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 539 ~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
.+|+.+++. .|+..|.+..|.+..-
T Consensus 368 ~~~~~~Fil--~Gs~~vQVCt~V~~~~ 392 (471)
T KOG1799|consen 368 GYDAAEFIL--LGSNTVQVCTGVMMHG 392 (471)
T ss_pred ccchhhHhh--cCCcHhhhhhHHHhcC
Confidence 999999998 5899999999988654
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=6e-07 Score=91.53 Aligned_cols=120 Identities=10% Similarity=0.112 Sum_probs=85.6
Q ss_pred hCCCcEEEEcCCCCCcccccCCccccccCCh--HHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCE
Q 005508 419 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKP--MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASA 496 (693)
Q Consensus 419 ~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp--~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~da 496 (693)
++|+|+|-+.. |. +..| +.+.++++.+++..++|+.+-+.. .+-+..+.++|+++
T Consensus 86 ~aGad~I~~d~--~~------------~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t---------~ee~~~a~~~G~d~ 142 (221)
T PRK01130 86 AAGADIIALDA--TL------------RPRPDGETLAELVKRIKEYPGQLLMADCST---------LEEGLAAQKLGFDF 142 (221)
T ss_pred HcCCCEEEEeC--CC------------CCCCCCCCHHHHHHHHHhCCCCeEEEeCCC---------HHHHHHHHHcCCCE
Confidence 57999888742 21 1122 456677777766456777764332 23356788999999
Q ss_pred EEEec--ccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 497 VTVHG--RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 497 ItVHg--Rtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
|.++. .+.........++++++++++.+ ++||++.|||.+++++.+++. .|||+|+||++++ +|+
T Consensus 143 i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~--~GadgV~iGsai~-~~~ 209 (221)
T PRK01130 143 IGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALE--LGAHAVVVGGAIT-RPE 209 (221)
T ss_pred EEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHH--CCCCEEEEchHhc-CCH
Confidence 97743 33222223446789999999988 699999999999999999887 5899999998865 443
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-06 Score=89.83 Aligned_cols=147 Identities=11% Similarity=0.086 Sum_probs=112.7
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCC----hHHHHHHHHHh-ccccccCEEE
Q 005508 395 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTK----PMRMKGIIEAT-SGTVDKPITI 469 (693)
Q Consensus 395 ~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~r----p~~l~eIV~av-~~~v~iPVtV 469 (693)
.++.+|+.|.-- . +.++.+- .+|++-|=|| +...++ |+++.++++.. .+.+-+-|-+
T Consensus 82 ~~~~vqvGGGIR-~--e~i~~~l-~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~ 143 (262)
T PLN02446 82 YPGGLQVGGGVN-S--ENAMSYL-DAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSC 143 (262)
T ss_pred CCCCEEEeCCcc-H--HHHHHHH-HcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 346789988765 3 4444444 4799999885 455566 99999999988 5444333444
Q ss_pred Eec--------CCCCC-ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHH
Q 005508 470 KVR--------TGYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL 540 (693)
Q Consensus 470 KiR--------~G~~d-~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~e 540 (693)
|.. -||.+ ...++.+++..+.+.|+..|.++.-.+.++..| .|.+.++++++.+ ++|||++|||.|.+
T Consensus 144 k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G-~d~el~~~l~~~~--~ipVIASGGv~sle 220 (262)
T PLN02446 144 RKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLG-IDEELVALLGEHS--PIPVTYAGGVRSLD 220 (262)
T ss_pred EecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccC-CCHHHHHHHHhhC--CCCEEEECCCCCHH
Confidence 311 25654 344788899999999999999999999988877 7899999999997 79999999999999
Q ss_pred HHHHHHhcCCCcCEEEEcHHHh
Q 005508 541 DWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 541 Da~~~l~~~~gaDgVMIGRgaL 562 (693)
|+.++.....|+.+|.|||+++
T Consensus 221 Di~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 221 DLERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred HHHHHHHcCCCCEEEEEEeeHH
Confidence 9998765312789999999994
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.5e-07 Score=91.83 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHH-----HHHHHhccccccCEE--EEecCCCC
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMK-----GIIEATSGTVDKPIT--IKVRTGYF 476 (693)
Q Consensus 404 ~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~-----eIV~av~~~v~iPVt--VKiR~G~~ 476 (693)
.+++.+.++++.+. +. +|.||||+-||-+. .-|-.+.+.+..+. ++++++++.+++|+. +|+...
T Consensus 15 p~~~~~~~~~~~l~-~~-ad~iElgip~sdp~----adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~-- 86 (244)
T PRK13125 15 PNVESFKEFIIGLV-EL-VDILELGIPPKYPK----YDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDY-- 86 (244)
T ss_pred CCHHHHHHHHHHHH-hh-CCEEEECCCCCCCC----CCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchh--
Confidence 37899999999887 55 99999999888763 33566666777776 899999988899974 555542
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeccc--------------cc-------------------------Cc--c------C
Q 005508 477 EGKNRIDSLIADIGTWGASAVTVHGRT--------------RQ-------------------------QR--Y------S 509 (693)
Q Consensus 477 d~~~~~~~la~~L~eaG~daItVHgRt--------------r~-------------------------q~--y------t 509 (693)
.....++++.+.++|+++|++|.-. ++ .. | +
T Consensus 87 --~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~ 164 (244)
T PRK13125 87 --VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPAT 164 (244)
T ss_pred --hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCC
Confidence 2345678888889999999998310 00 00 0 0
Q ss_pred CC---cc-HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 510 KL---AD-WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 510 g~---Ad-w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
+. .+ .+.++++++..+ ..||+.-|||.+.+++.+++. .|||+|.+|++++.
T Consensus 165 g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~--~gaD~vvvGSai~~ 219 (244)
T PRK13125 165 GVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALS--AGADGVVVGTAFIE 219 (244)
T ss_pred CCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHH--cCCCEEEECHHHHH
Confidence 10 11 346777777664 479999999999999999776 58999999998764
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.5e-07 Score=99.63 Aligned_cols=197 Identities=21% Similarity=0.246 Sum_probs=124.9
Q ss_pred CCccccCcEEEccCCCCCcHHHHHHHHHc-CCCEEEecccccchhccCChhhhhhhhc--------cCCCCeEEEEecCC
Q 005508 334 KLIDFREKLYLAPLTTVGNLPFRRVCKVL-GADVTCGEMAMCTNLLQGQASEWALLRR--------HSSEDLFGVQICGA 404 (693)
Q Consensus 334 ~~l~lknriiLAPMt~v~dlpFRrl~~~~-Gadl~~TEM~~a~~ll~g~~~e~~ll~~--------h~~e~p~gvQL~G~ 404 (693)
+++.|+-|++-|||.+|++..+-....++ |.+++.-+|..... ......++. ....-.+++-+ |.
T Consensus 32 ~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q-----~~~v~~vK~~~~~a~~d~~~~l~V~aav-g~ 105 (352)
T PF00478_consen 32 RNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQ-----AEEVKKVKRYYPNASKDEKGRLLVAAAV-GT 105 (352)
T ss_dssp TSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHH-----HHHHHHHHTHHTTHHBHTTSCBCEEEEE-ES
T ss_pred CCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHH-----HHHHhhhccccccccccccccceEEEEe-cC
Confidence 78888999999999999998776444444 67877666542211 111111111 11122344444 44
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRID 483 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~ 483 (693)
.++.+.++..+++ +|+|.|=|... .| +.+.+.+.++.+++.. ++||.+-- -.+.
T Consensus 106 ~~~~~er~~~L~~--agvD~ivID~a--------~g-------~s~~~~~~ik~ik~~~~~~~viaGN--------V~T~ 160 (352)
T PF00478_consen 106 RDDDFERAEALVE--AGVDVIVIDSA--------HG-------HSEHVIDMIKKIKKKFPDVPVIAGN--------VVTY 160 (352)
T ss_dssp STCHHHHHHHHHH--TT-SEEEEE-S--------ST-------TSHHHHHHHHHHHHHSTTSEEEEEE--------E-SH
T ss_pred CHHHHHHHHHHHH--cCCCEEEcccc--------Cc-------cHHHHHHHHHHHHHhCCCceEEecc--------cCCH
Confidence 5566777776654 68998876421 12 3456778888888877 47777632 1235
Q ss_pred HHHHHHHHcCCCEEEEecc------cccCccCCCccHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 484 SLIADIGTWGASAVTVHGR------TRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 484 ~la~~L~eaG~daItVHgR------tr~q~ytg~Adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
+-++.|.++|+|+|-|--. ||...-.+.+-+..|.+|++... -.+|||+-|||.+.-|+.++|. .|||.||
T Consensus 161 e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla--~GAd~VM 238 (352)
T PF00478_consen 161 EGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALA--AGADAVM 238 (352)
T ss_dssp HHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHH--TT-SEEE
T ss_pred HHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeee--eccccee
Confidence 6777899999999988422 23332334556778888877542 1599999999999999999998 6999999
Q ss_pred EcHHHhh
Q 005508 557 IARGALI 563 (693)
Q Consensus 557 IGRgaL~ 563 (693)
+|+-+-.
T Consensus 239 lG~llAg 245 (352)
T PF00478_consen 239 LGSLLAG 245 (352)
T ss_dssp ESTTTTT
T ss_pred echhhcc
Confidence 9976544
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-06 Score=92.01 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=108.7
Q ss_pred ccccCcEEEccCCCCCcHHHHHHHHHcC-CCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHH---
Q 005508 336 IDFREKLYLAPLTTVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLAR--- 411 (693)
Q Consensus 336 l~lknriiLAPMt~v~dlpFRrl~~~~G-adl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~--- 411 (693)
+.++-+|+.|||..+++..+---+.+.| .+++=+-......+ ..+...++.+. +.||+|.|+.........
T Consensus 8 lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l----~~~i~~~~~~t-~~pfgvnl~~~~~~~~~~~~~ 82 (330)
T PF03060_consen 8 LGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQL----REEIRKIRALT-DKPFGVNLFLPPPDPADEEDA 82 (330)
T ss_dssp HT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHH----HHHHHHHHHH--SS-EEEEEETTSTTHHHH-HH
T ss_pred hCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHH----HHHHHHHHhhc-cccccccccccCcccchhhhh
Confidence 4457899999999999987766665554 56542111111111 11222233333 339999988654322111
Q ss_pred -------H-HHHHhhhC--------------CCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEE
Q 005508 412 -------T-VELIDQQC--------------TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITI 469 (693)
Q Consensus 412 -------A-A~~~~~~a--------------G~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtV 469 (693)
. ..+.. .. +++.|-..+|.|.. ++++.+++ .++.|.+
T Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~-------------------~~i~~l~~-~gi~v~~ 141 (330)
T PF03060_consen 83 WPKELGNAVLELCI-EEGVPFEEQLDVALEAKPDVVSFGFGLPPP-------------------EVIERLHA-AGIKVIP 141 (330)
T ss_dssp HHHHTHHHHHHHHH-HTT-SHHHHHHHHHHS--SEEEEESSSC-H-------------------HHHHHHHH-TT-EEEE
T ss_pred hhhhhHHHHHHHHH-HhCcccccccccccccceEEEEeecccchH-------------------HHHHHHHH-cCCcccc
Confidence 1 11111 22 34477777777642 23444433 3667777
Q ss_pred EecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCC-Cc--cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH
Q 005508 470 KVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSK-LA--DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK 546 (693)
Q Consensus 470 KiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg-~A--dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l 546 (693)
.+.. .+.++.+.++|+|+|++-|.-. ++..+ .. -+.++.++++.+ ++|||+.|||.|.+++..+|
T Consensus 142 ~v~s---------~~~A~~a~~~G~D~iv~qG~eA-GGH~g~~~~~~~~L~~~v~~~~--~iPViaAGGI~dg~~iaaal 209 (330)
T PF03060_consen 142 QVTS---------VREARKAAKAGADAIVAQGPEA-GGHRGFEVGSTFSLLPQVRDAV--DIPVIAAGGIADGRGIAAAL 209 (330)
T ss_dssp EESS---------HHHHHHHHHTT-SEEEEE-TTS-SEE---SSG-HHHHHHHHHHH---SS-EEEESS--SHHHHHHHH
T ss_pred ccCC---------HHHHHHhhhcCCCEEEEecccc-CCCCCccccceeeHHHHHhhhc--CCcEEEecCcCCHHHHHHHH
Confidence 5543 5667889999999999987642 23333 22 478889999998 69999999999999999988
Q ss_pred hcCCCcCEEEEcHHHhhCCC
Q 005508 547 SDCPELASCMIARGALIKPW 566 (693)
Q Consensus 547 ~~~~gaDgVMIGRgaL~nPw 566 (693)
. -|||||++|..+|.=+.
T Consensus 210 ~--lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 210 A--LGADGVQMGTRFLATEE 227 (330)
T ss_dssp H--CT-SEEEESHHHHTSTT
T ss_pred H--cCCCEeecCCeEEeccc
Confidence 7 59999999999987553
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.1e-06 Score=86.18 Aligned_cols=203 Identities=16% Similarity=0.143 Sum_probs=129.2
Q ss_pred ccCCccccCcEEEccCCCCCc-HHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecC-CCHHHH
Q 005508 332 EKKLIDFREKLYLAPLTTVGN-LPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG-AYPDTL 409 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~v~d-lpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G-~~pe~~ 409 (693)
.+++..|..|++|- -..|.+ .-.+.....-|++++..-+=-. .+.++...-|.++.. ..-.+...-+| .+.++.
T Consensus 3 ~i~~~~~~SRl~~G-tgky~s~~~~~~ai~asg~~ivTvalrR~-~~~~~~~~~~~~i~~--~~~~~lpNTaG~~ta~eA 78 (250)
T PRK00208 3 TIAGKTFSSRLLLG-TGKYPSPQVMQEAIEASGAEIVTVALRRV-NLGQGGDNLLDLLPP--LGVTLLPNTAGCRTAEEA 78 (250)
T ss_pred EECCEEeeccceEe-cCCCCCHHHHHHHHHHhCCCeEEEEEEee-cCCCCcchHHhhccc--cCCEECCCCCCCCCHHHH
Confidence 46778899999884 233434 3445555566998763211000 111222344554432 12222223333 468999
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcc-cc-ccCEEEEecCCCCCChhHHHHHHH
Q 005508 410 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG-TV-DKPITIKVRTGYFEGKNRIDSLIA 487 (693)
Q Consensus 410 ~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~-~v-~iPVtVKiR~G~~d~~~~~~~la~ 487 (693)
++.|+++.+-.+-++|-|-. ..+- -.|+.|+..+.+-.+.+.+ -. -+|+.. ++ ..+++
T Consensus 79 v~~a~lare~~~~~~iKlEV-------i~d~--~~llpd~~~tv~aa~~L~~~Gf~vlpyc~-------~d----~~~ak 138 (250)
T PRK00208 79 VRTARLAREALGTNWIKLEV-------IGDD--KTLLPDPIETLKAAEILVKEGFVVLPYCT-------DD----PVLAK 138 (250)
T ss_pred HHHHHHHHHHhCCCeEEEEE-------ecCC--CCCCcCHHHHHHHHHHHHHCCCEEEEEeC-------CC----HHHHH
Confidence 99999998655778877742 1111 1355565554444443321 11 233332 22 57899
Q ss_pred HHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 488 DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 488 ~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
+|++.|+++|..+|..-... .+..++++++.+++.. ++|||..|+|.+++|+.++++ .|||+|++|.|+..
T Consensus 139 ~l~~~G~~~vmPlg~pIGsg-~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~Ame--lGAdgVlV~SAItk 209 (250)
T PRK00208 139 RLEEAGCAAVMPLGAPIGSG-LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAME--LGADAVLLNTAIAV 209 (250)
T ss_pred HHHHcCCCEeCCCCcCCCCC-CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHH--cCCCEEEEChHhhC
Confidence 99999999998777765444 4667899999999986 799999999999999999987 59999999999874
|
|
| >KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-08 Score=105.91 Aligned_cols=66 Identities=33% Similarity=0.783 Sum_probs=53.9
Q ss_pred hhccccCChhhhccCCCCCCCC-CCCCCCCCChhhhh------h--cCCCCCCCCCCCcCcccccCCCCCcccccCcc
Q 005508 97 KKSASHLCPEVAKSGDVSSCPY-KDKCRFSHDLDGFK------A--QKPDDLEGECPFLSSEGPCPYGLACRFSGTHR 165 (693)
Q Consensus 97 ~~~~~~LC~~~~~~~~~~~C~~-Gd~Crf~Hd~~~yl------~--~K~~di~~~Cp~f~~~G~Cp~G~~CRF~~sH~ 165 (693)
...++.||.+|...+ .|+| |++|||.|.+++-. . .-+.--+..|+.|...|+||||.+|+|..-..
T Consensus 128 ~~~kt~lc~~~~~~g---~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSG---TCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP 202 (332)
T ss_pred ccccCCcceeeecCc---cccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence 346789999999998 9999 99999999887654 1 22333367999999999999999999976554
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.48 E-value=9e-07 Score=91.22 Aligned_cols=180 Identities=17% Similarity=0.248 Sum_probs=119.3
Q ss_pred HHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccC
Q 005508 360 KVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNK 439 (693)
Q Consensus 360 ~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~ 439 (693)
...|++.++-==. .....+....+.++..-.....+-+|+.|. ...+..+.+++. +|++-|=|
T Consensus 39 ~~~g~~~l~ivDL--daa~~g~~~n~~~i~~i~~~~~~~i~vgGG-Irs~ed~~~ll~--~Ga~~Vvi------------ 101 (229)
T PF00977_consen 39 NEQGADELHIVDL--DAAKEGRGSNLELIKEIAKETGIPIQVGGG-IRSIEDAERLLD--AGADRVVI------------ 101 (229)
T ss_dssp HHTT-SEEEEEEH--HHHCCTHHHHHHHHHHHHHHSSSEEEEESS-E-SHHHHHHHHH--TT-SEEEE------------
T ss_pred HHcCCCEEEEEEc--cCcccCchhHHHHHHHHHhcCCccEEEeCc-cCcHHHHHHHHH--hCCCEEEe------------
Confidence 4568886541111 122244444455443222222356888775 334545555553 58887666
Q ss_pred CccccccCChHHHHHHHHHhcc-ccccCEEEEec-----CCCCCC-hhHHHHHHHHHHHcCCCEEEEecccccCccCCCc
Q 005508 440 GAGSCLLTKPMRMKGIIEATSG-TVDKPITIKVR-----TGYFEG-KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA 512 (693)
Q Consensus 440 G~GsaLl~rp~~l~eIV~av~~-~v~iPVtVKiR-----~G~~d~-~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~A 512 (693)
|+..+++|+++.++++..-. .+-+-|-+|-. -||.+. ..+..++++.+.+.|+..|.++.-.+.+...| .
T Consensus 102 --gt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-~ 178 (229)
T PF00977_consen 102 --GTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQG-P 178 (229)
T ss_dssp --SHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--
T ss_pred --ChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCC-C
Confidence 56788999999999998754 32222222221 135432 34689999999999999999999988888887 7
Q ss_pred cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 513 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 513 dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
|++.++++++.+ ++|||+.|||.+.+|+.++.. .|+++|++|++++.
T Consensus 179 d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~--~G~~gvivg~al~~ 225 (229)
T PF00977_consen 179 DLELLKQLAEAV--NIPVIASGGVRSLEDLRELKK--AGIDGVIVGSALHE 225 (229)
T ss_dssp -HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHH--TTECEEEESHHHHT
T ss_pred CHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHH--CCCcEEEEehHhhC
Confidence 899999999998 799999999999999999764 79999999999864
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-05 Score=79.85 Aligned_cols=177 Identities=12% Similarity=0.089 Sum_probs=112.3
Q ss_pred HHHHHHHcCCCEE--EecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 005508 355 FRRVCKVLGADVT--CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCP 432 (693)
Q Consensus 355 FRrl~~~~Gadl~--~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP 432 (693)
+-+.+...||+.+ .|+... ..+....+..++.. .+.|+.++=+..++.. ++.+. ++|+|+|=|.. +
T Consensus 36 ~A~~~~~~GA~~l~v~~~~~~----~~g~~~~~~~i~~~-v~iPi~~~~~i~~~~~----v~~~~-~~Gad~v~l~~--~ 103 (217)
T cd00331 36 IAKAYEKAGAAAISVLTEPKY----FQGSLEDLRAVREA-VSLPVLRKDFIIDPYQ----IYEAR-AAGADAVLLIV--A 103 (217)
T ss_pred HHHHHHHcCCCEEEEEeCccc----cCCCHHHHHHHHHh-cCCCEEECCeecCHHH----HHHHH-HcCCCEEEEee--c
Confidence 3344456788765 233222 12333444444443 2456555433345532 22333 57999998742 1
Q ss_pred CcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCc
Q 005508 433 IDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA 512 (693)
Q Consensus 433 ~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~A 512 (693)
.+ .++.+.++++.... .++.+.+-+. +| . -++.+.++|++.+.+++|.... ...
T Consensus 104 ------------~~-~~~~~~~~~~~~~~-~g~~~~v~v~-~~----~----e~~~~~~~g~~~i~~t~~~~~~---~~~ 157 (217)
T cd00331 104 ------------AL-DDEQLKELYELARE-LGMEVLVEVH-DE----E----ELERALALGAKIIGINNRDLKT---FEV 157 (217)
T ss_pred ------------cC-CHHHHHHHHHHHHH-cCCeEEEEEC-CH----H----HHHHHHHcCCCEEEEeCCCccc---cCc
Confidence 12 23677777776633 3554444443 22 1 2566778999999999876432 245
Q ss_pred cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHH
Q 005508 513 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 571 (693)
Q Consensus 513 dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eI 571 (693)
+.+.+.++++.++.++|||+.|||.+++++.+++. .|+|+|+||++++..++.-..+
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~--~Ga~gvivGsai~~~~~p~~~~ 214 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAE--AGADAVLIGESLMRAPDPGAAL 214 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHH--cCCCEEEECHHHcCCCCHHHHH
Confidence 67889999887533699999999999999999876 5999999999999877655544
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.7e-06 Score=87.85 Aligned_cols=195 Identities=16% Similarity=0.156 Sum_probs=130.3
Q ss_pred CccccCcEEEccCCCCCcHHHHHHHHHcCC-CEEEecccccchhccCChhhhhh-hhccCCC--CeEEEEecCCCHHHHH
Q 005508 335 LIDFREKLYLAPLTTVGNLPFRRVCKVLGA-DVTCGEMAMCTNLLQGQASEWAL-LRRHSSE--DLFGVQICGAYPDTLA 410 (693)
Q Consensus 335 ~l~lknriiLAPMt~v~dlpFRrl~~~~Ga-dl~~TEM~~a~~ll~g~~~e~~l-l~~h~~e--~p~gvQL~G~~pe~~~ 410 (693)
...++=+++-|+|.||++...-....++|. .++ =-+ -...+|.- ++....+ ..+.|.+ |-.++++.
T Consensus 42 ~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~i-Hk~--------~~~e~~~~fv~~~~~~~~~~~~vav-G~~~~d~e 111 (346)
T PRK05096 42 QSWSGVPIIAANMDTVGTFEMAKALASFDILTAV-HKH--------YSVEEWAAFVNNSSADVLKHVMVST-GTSDADFE 111 (346)
T ss_pred ccccCCceEecCCCccccHHHHHHHHHCCCeEEE-ecC--------CCHHHHHHHHHhccccccceEEEEe-cCCHHHHH
Confidence 445567899999999999877666666653 332 111 12334542 3222222 2333433 67789999
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHH
Q 005508 411 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADI 489 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L 489 (693)
++.+++...+|+|+|=|... .| +...+.++|+.+++.. +++|.+- + -.+.+.++.|
T Consensus 112 r~~~L~~~~~g~D~iviD~A--------hG-------hs~~~i~~ik~ik~~~P~~~vIaG---N-----V~T~e~a~~L 168 (346)
T PRK05096 112 KTKQILALSPALNFICIDVA--------NG-------YSEHFVQFVAKAREAWPDKTICAG---N-----VVTGEMVEEL 168 (346)
T ss_pred HHHHHHhcCCCCCEEEEECC--------CC-------cHHHHHHHHHHHHHhCCCCcEEEe---c-----ccCHHHHHHH
Confidence 99988864468998877532 22 3567889999999877 6666651 1 1235677889
Q ss_pred HHcCCCEEEEec------ccccCccCCCccHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 490 GTWGASAVTVHG------RTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 490 ~eaG~daItVHg------Rtr~q~ytg~Adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
.++|||+|-|-- .||.-.-.|.+-+..|.+|++... ..+|||+-|||.+.-|+.++|. .|||.||+|+-+-
T Consensus 169 i~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAla--aGAd~VMlGsllA 246 (346)
T PRK05096 169 ILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFG--GGADFVMLGGMLA 246 (346)
T ss_pred HHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHH--cCCCEEEeChhhc
Confidence 999999997621 233322234456777777776532 1589999999999999999997 5999999997665
Q ss_pred hC
Q 005508 563 IK 564 (693)
Q Consensus 563 ~n 564 (693)
.-
T Consensus 247 Gt 248 (346)
T PRK05096 247 GH 248 (346)
T ss_pred Cc
Confidence 54
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.2e-06 Score=85.99 Aligned_cols=143 Identities=12% Similarity=0.236 Sum_probs=108.0
Q ss_pred EEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec----
Q 005508 397 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR---- 472 (693)
Q Consensus 397 ~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR---- 472 (693)
+-+|+.|. ...+..+.+++ .+|++-|=| |+..+++|+++.++.+..-..+ -|++-.+
T Consensus 77 ~pi~vGGG-Irs~e~v~~~l--~~Ga~kvvi--------------gt~a~~~~~~l~~~~~~fg~~i--vvslD~~~g~v 137 (234)
T PRK13587 77 KDIEVGGG-IRTKSQIMDYF--AAGINYCIV--------------GTKGIQDTDWLKEMAHTFPGRI--YLSVDAYGEDI 137 (234)
T ss_pred CeEEEcCC-cCCHHHHHHHH--HCCCCEEEE--------------CchHhcCHHHHHHHHHHcCCCE--EEEEEeeCCEE
Confidence 34788664 33343444444 368888765 4677889999999988874332 2333222
Q ss_pred --CCCCC-ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 005508 473 --TGYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 549 (693)
Q Consensus 473 --~G~~d-~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 549 (693)
-||.+ ...+..++++.+.++|+..|.+..-.+.+...| .|++.+.++.+.+ ++|||+.|||.|.+|+.+++.
T Consensus 138 ~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~-- 212 (234)
T PRK13587 138 KVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSG-PNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLAS-- 212 (234)
T ss_pred EecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCc-cCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH--
Confidence 24544 234678999999999999999988888877766 7899999999887 799999999999999999875
Q ss_pred CCcCEEEEcHHHhh
Q 005508 550 PELASCMIARGALI 563 (693)
Q Consensus 550 ~gaDgVMIGRgaL~ 563 (693)
.|+++|.+|+.++.
T Consensus 213 ~G~~~vivG~a~~~ 226 (234)
T PRK13587 213 LNVHAAIIGKAAHQ 226 (234)
T ss_pred cCCCEEEEhHHHHh
Confidence 69999999999875
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.4e-06 Score=87.39 Aligned_cols=135 Identities=15% Similarity=0.196 Sum_probs=92.3
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHc
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 492 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ea 492 (693)
|++++ ++|.-+|--=---|.+. +...|-+=|++|+.+.+|.+ .+++||.-|+|.|. ..=++.|+++
T Consensus 23 a~iae-~aga~avm~le~~p~d~--r~~ggv~R~~~p~~I~~I~~----~V~iPVig~~kigh-------~~Ea~~L~~~ 88 (287)
T TIGR00343 23 AKIAE-EAGAVAVMALERVPADI--RASGGVARMSDPKMIKEIMD----AVSIPVMAKVRIGH-------FVEAQILEAL 88 (287)
T ss_pred HHHHH-HcCceEEEeeccCchhh--HhcCCeeecCCHHHHHHHHH----hCCCCEEEEeeccH-------HHHHHHHHHc
Confidence 44554 67754443322346664 34456788899988666655 45899999999984 2334455556
Q ss_pred CCCEEEEecc-----------------------------------------cccCccCC---------------------
Q 005508 493 GASAVTVHGR-----------------------------------------TRQQRYSK--------------------- 510 (693)
Q Consensus 493 G~daItVHgR-----------------------------------------tr~q~ytg--------------------- 510 (693)
|+|.|.-+-| |.-..||+
T Consensus 89 GvDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~ 168 (287)
T TIGR00343 89 GVDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQN 168 (287)
T ss_pred CCCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 6665542211 11122333
Q ss_pred --------------CccHHHHHHHHHHcCCCceEE--EeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 511 --------------LADWDYIYQCARKASDDLQVL--GNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 511 --------------~Adw~~I~~i~~~~~~~IPVI--gNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
.++++.++++++.. ++||| +.|||.|++++..+++ .|||+|+||+++...+
T Consensus 169 ~~~~~~~~~~a~~~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~me--lGAdGVaVGSaI~ks~ 235 (287)
T TIGR00343 169 MLEEEDLAAVAKELRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQ--LGADGVFVGSGIFKSS 235 (287)
T ss_pred ccchhHHhhhhcccCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHH--cCCCEEEEhHHhhcCC
Confidence 25789999999987 69998 9999999999999887 6999999999998643
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.9e-06 Score=87.07 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHcCCCceEE--EeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 512 ADWDYIYQCARKASDDLQVL--GNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 512 Adw~~I~~i~~~~~~~IPVI--gNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
++|++++++++.+ ++||| +.|||++++++..+++ .|||+|+||++++.-+.
T Consensus 181 ~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e--~GAdgVaVGSAI~~a~d 233 (283)
T cd04727 181 APYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQ--LGADGVFVGSGIFKSEN 233 (283)
T ss_pred CCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHH--cCCCEEEEcHHhhcCCC
Confidence 5899999999988 69997 9999999999999886 69999999999986443
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.7e-06 Score=85.19 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=108.4
Q ss_pred EEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC---
Q 005508 397 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT--- 473 (693)
Q Consensus 397 ~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~--- 473 (693)
+-+|+.|.- ..+..+..++ .+|+|-|=| |+..+++|+++.++ ...-. .+-|++-+|-
T Consensus 74 ~~v~vGGGI-rs~e~~~~~l--~~Ga~rvvi--------------gT~a~~~p~~l~~~-~~~~~--~ivvslD~k~g~v 133 (241)
T PRK14114 74 EHIQIGGGI-RSLDYAEKLR--KLGYRRQIV--------------SSKVLEDPSFLKFL-KEIDV--EPVFSLDTRGGKV 133 (241)
T ss_pred CcEEEecCC-CCHHHHHHHH--HCCCCEEEE--------------CchhhCCHHHHHHH-HHhCC--CEEEEEEccCCEE
Confidence 357886642 2333333344 368888766 45667899999998 44322 2334444432
Q ss_pred ---CCCC-ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 005508 474 ---GYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 549 (693)
Q Consensus 474 ---G~~d-~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 549 (693)
||.+ ......++++.+++.|+..|.+..-.+.+..+| .|++.++++++.+ ++|||+.|||.|.+|+.++....
T Consensus 134 ~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G-~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~ 210 (241)
T PRK14114 134 AFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQE-HDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVH 210 (241)
T ss_pred eeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCC-cCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcc
Confidence 4544 334688999999999999999998888888777 7999999999987 79999999999999999866520
Q ss_pred ---CC-cCEEEEcHHHhhCCCchhH
Q 005508 550 ---PE-LASCMIARGALIKPWIFTE 570 (693)
Q Consensus 550 ---~g-aDgVMIGRgaL~nPwiF~e 570 (693)
.| ++||.||++++..=-=+.+
T Consensus 211 ~~~~g~v~gvivg~Al~~g~i~~~e 235 (241)
T PRK14114 211 RETNGLLKGVIVGRAFLEGILTVEV 235 (241)
T ss_pred cccCCcEEEEEEehHHHCCCCCHHH
Confidence 15 9999999998765433333
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.5e-06 Score=84.39 Aligned_cols=141 Identities=12% Similarity=0.094 Sum_probs=105.4
Q ss_pred EEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHh-ccccccCEEEEec----
Q 005508 398 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT-SGTVDKPITIKVR---- 472 (693)
Q Consensus 398 gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av-~~~v~iPVtVKiR---- 472 (693)
-+|+.|. ...+..+.+++. .|++-|=| |+..+++|+++.++.+.. .+.+ -+++-+|
T Consensus 75 ~v~vGGG-Irs~e~~~~~l~--~Ga~kvvi--------------gt~a~~~p~~~~~~~~~~g~~~i--vvslD~~~~~~ 135 (232)
T PRK13586 75 WIQVGGG-IRDIEKAKRLLS--LDVNALVF--------------STIVFTNFNLFHDIVREIGSNRV--LVSIDYDNTKR 135 (232)
T ss_pred CEEEeCC-cCCHHHHHHHHH--CCCCEEEE--------------CchhhCCHHHHHHHHHHhCCCCE--EEEEEcCCCCE
Confidence 3788664 222333333443 58888755 467789999999999887 3332 2223221
Q ss_pred --C-CCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 005508 473 --T-GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 549 (693)
Q Consensus 473 --~-G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 549 (693)
+ ||.+......++++++++.|+..|.++.-.+.+...| .|++.++++++.. .|+|+.|||.|.+|+.++..
T Consensus 136 v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G-~d~el~~~~~~~~---~~viasGGv~s~~Dl~~l~~-- 209 (232)
T PRK13586 136 VLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKG-IDYNVKDYARLIR---GLKEYAGGVSSDADLEYLKN-- 209 (232)
T ss_pred EEccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcC-cCHHHHHHHHhCC---CCEEEECCCCCHHHHHHHHH--
Confidence 1 5765555788999999999999999999888888877 7899999887753 46999999999999999764
Q ss_pred CCcCEEEEcHHHhh
Q 005508 550 PELASCMIARGALI 563 (693)
Q Consensus 550 ~gaDgVMIGRgaL~ 563 (693)
.|+|+|.||++++.
T Consensus 210 ~G~~gvivg~Aly~ 223 (232)
T PRK13586 210 VGFDYIIVGMAFYL 223 (232)
T ss_pred CCCCEEEEehhhhc
Confidence 69999999999874
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-05 Score=82.70 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=107.9
Q ss_pred EEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCC----hHHHHHHHHHh-ccccccCEEEEe
Q 005508 397 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTK----PMRMKGIIEAT-SGTVDKPITIKV 471 (693)
Q Consensus 397 ~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~r----p~~l~eIV~av-~~~v~iPVtVKi 471 (693)
+-+|+.|.-- . ..+.+.+ .+|++.|=|| +++..+ |+++.++.+.. .+.+-+-|-+|.
T Consensus 77 ~~v~vGGGIr-~-e~v~~~l--~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~ 138 (253)
T TIGR02129 77 GGLQVGGGIN-D-TNAQEWL--DEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRK 138 (253)
T ss_pred CCEEEeCCcC-H-HHHHHHH--HcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEE
Confidence 5689887654 3 4444444 4799998884 455555 88999999988 454433334441
Q ss_pred ---------cCCCCC-ChhHHH-HHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHH
Q 005508 472 ---------RTGYFE-GKNRID-SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL 540 (693)
Q Consensus 472 ---------R~G~~d-~~~~~~-~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~e 540 (693)
--||.+ ...++. ++++.+++. +..|.+..-.+.+...| .|++.++++++.+ ++|||++|||.|.+
T Consensus 139 ~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G-~dlel~~~l~~~~--~ipVIASGGv~s~e 214 (253)
T TIGR02129 139 TQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCKG-IDEELVSKLGEWS--PIPITYAGGAKSID 214 (253)
T ss_pred cCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCcccc-CCHHHHHHHHhhC--CCCEEEECCCCCHH
Confidence 125655 334566 999999999 99999999999998877 7999999999987 79999999999999
Q ss_pred HHHHHHhcCCCcCEEEEcHHHhh
Q 005508 541 DWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 541 Da~~~l~~~~gaDgVMIGRgaL~ 563 (693)
|+.++..-..+..++.+|++++.
T Consensus 215 Di~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 215 DLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHHhcCCCCcEEeeehHHH
Confidence 99986321025777999999875
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.7e-06 Score=86.33 Aligned_cols=90 Identities=19% Similarity=0.116 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
.+..++++.+++.|++.|+|+..++... ....++++++++++.+ ++||+.+|||.+.+|+.+++. .|++.|++|+
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~-~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~--~G~~~vilg~ 104 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKR-GREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLS--LGADKVSINT 104 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCccc-CCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHH--cCCCEEEECh
Confidence 3678999999999999999999887433 3458999999999988 699999999999999999765 5899999999
Q ss_pred HHhhCCCchhHHHhc
Q 005508 560 GALIKPWIFTEIKEQ 574 (693)
Q Consensus 560 gaL~nPwiF~eIke~ 574 (693)
+++.+|.++.++.+.
T Consensus 105 ~~l~~~~~~~~~~~~ 119 (232)
T TIGR03572 105 AALENPDLIEEAARR 119 (232)
T ss_pred hHhcCHHHHHHHHHH
Confidence 999999999998763
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.4e-05 Score=84.50 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=113.2
Q ss_pred cCcEEEccCCCCCc-HHHHHHHHHcC-CCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCH-HHHHHHHHH
Q 005508 339 REKLYLAPLTTVGN-LPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYP-DTLARTVEL 415 (693)
Q Consensus 339 knriiLAPMt~v~d-lpFRrl~~~~G-adl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~p-e~~~~AA~~ 415 (693)
+-+|+.+||+.+++ ..|-.-+.+.| .+++=........ + ..+...++..-.+.||+|.|.+..+ ..+.+..+.
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~-l---~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~v 77 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQ-V---KALLEETAELLGDKPWGVGILGFVDTELRAAQLAV 77 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHH-H---HHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHH
Confidence 35799999999998 66655555543 4543111111110 0 0011112222246899999965322 123334444
Q ss_pred HhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCC
Q 005508 416 IDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGAS 495 (693)
Q Consensus 416 ~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~d 495 (693)
+. +.++..|-+..|.|. . ++.+++ .++.|...+.. ...++++++.|+|
T Consensus 78 i~-e~~v~~V~~~~G~P~-----------------~----~~~lk~-~Gi~v~~~v~s---------~~~A~~a~~~GaD 125 (320)
T cd04743 78 VR-AIKPTFALIAGGRPD-----------------Q----ARALEA-IGISTYLHVPS---------PGLLKQFLENGAR 125 (320)
T ss_pred HH-hcCCcEEEEcCCChH-----------------H----HHHHHH-CCCEEEEEeCC---------HHHHHHHHHcCCC
Confidence 44 458899988776663 1 123332 36666654432 5678889999999
Q ss_pred EEEEecccccCccCCC-ccHHHHHHHHHHc--------CCCceEEEeCCCCCHHHHHHHHhcCCCc--------CEEEEc
Q 005508 496 AVTVHGRTRQQRYSKL-ADWDYIYQCARKA--------SDDLQVLGNGDIYSYLDWNKHKSDCPEL--------ASCMIA 558 (693)
Q Consensus 496 aItVHgRtr~q~ytg~-Adw~~I~~i~~~~--------~~~IPVIgNGdI~s~eDa~~~l~~~~ga--------DgVMIG 558 (693)
+|++.|.-..+. .+. .-+..+.++.+.+ ..+||||+.|||.|...+..++.- |+ +||.||
T Consensus 126 ~vVaqG~EAGGH-~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaL--GA~~~~~Ga~~GV~mG 202 (320)
T cd04743 126 KFIFEGRECGGH-VGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSAL--AAPLAERGAKVGVLMG 202 (320)
T ss_pred EEEEecCcCcCC-CCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHc--CCcccccccccEEEEc
Confidence 999988754332 221 1222333333222 015999999999999998877763 55 899999
Q ss_pred HHHhhCCCc
Q 005508 559 RGALIKPWI 567 (693)
Q Consensus 559 RgaL~nPwi 567 (693)
..+|.-+..
T Consensus 203 TrFl~t~Es 211 (320)
T cd04743 203 TAYLFTEEA 211 (320)
T ss_pred cHHhcchhh
Confidence 999875544
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.5e-05 Score=78.92 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=118.2
Q ss_pred HHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccC
Q 005508 360 KVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNK 439 (693)
Q Consensus 360 ~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~ 439 (693)
...|++.++-=-..+. .+......+++.-.....+-+|+.|. ...+..+.+++. +|++-|=||
T Consensus 45 ~~~g~~~l~i~DLd~~---~~~~~n~~~i~~i~~~~~~~v~vgGG-ir~~edv~~~l~--~Ga~~viig----------- 107 (233)
T cd04723 45 KELGFRGLYIADLDAI---MGRGDNDEAIRELAAAWPLGLWVDGG-IRSLENAQEWLK--RGASRVIVG----------- 107 (233)
T ss_pred HHCCCCEEEEEeCccc---cCCCccHHHHHHHHHhCCCCEEEecC-cCCHHHHHHHHH--cCCCeEEEc-----------
Confidence 3458876542222221 23333333443222222345788764 233444444443 577776664
Q ss_pred CccccccCChHHHHHHHHHhccccccCEEEEecCC---CCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHH
Q 005508 440 GAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG---YFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDY 516 (693)
Q Consensus 440 G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G---~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~ 516 (693)
+....+ +++.++++..... .+-|++-++-| +.....+..++++.+++. ++.|++..-.+.....+ .|++.
T Consensus 108 ---t~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g-~~~~~ 180 (233)
T cd04723 108 ---TETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQG-PDLEL 180 (233)
T ss_pred ---ceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccCCC-cCHHH
Confidence 455677 8999999988541 23344444433 112334578899999999 99999988777665544 78999
Q ss_pred HHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 517 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 517 I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
+.++.+.+ ++||++.|||.|.+|+.+++. .|+++|.||++++..=
T Consensus 181 ~~~i~~~~--~ipvi~~GGi~s~edi~~l~~--~G~~~vivGsal~~g~ 225 (233)
T cd04723 181 LERLAARA--DIPVIAAGGVRSVEDLELLKK--LGASGALVASALHDGG 225 (233)
T ss_pred HHHHHHhc--CCCEEEeCCCCCHHHHHHHHH--cCCCEEEEehHHHcCC
Confidence 99999987 799999999999999999876 5999999999998763
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=80.98 Aligned_cols=130 Identities=15% Similarity=0.215 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHH
Q 005508 408 TLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIA 487 (693)
Q Consensus 408 ~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~ 487 (693)
.+.++-+++ ++|+|.|=|-+ ..-.||..+.++++.+++.. ..+..-+.+ .+=+.
T Consensus 53 T~~ev~~l~--~aGadIIAlDa--------------T~R~Rp~~l~~li~~i~~~~-~l~MADist---------~ee~~ 106 (192)
T PF04131_consen 53 TLKEVDALA--EAGADIIALDA--------------TDRPRPETLEELIREIKEKY-QLVMADIST---------LEEAI 106 (192)
T ss_dssp SHHHHHHHH--HCT-SEEEEE---------------SSSS-SS-HHHHHHHHHHCT-SEEEEE-SS---------HHHHH
T ss_pred CHHHHHHHH--HcCCCEEEEec--------------CCCCCCcCHHHHHHHHHHhC-cEEeeecCC---------HHHHH
Confidence 355555555 47999998864 12256788999999999887 788876665 33456
Q ss_pred HHHHcCCCEEE--EecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 488 DIGTWGASAVT--VHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 488 ~L~eaG~daIt--VHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
...++|+|.|. +.|=|..... ...||++++++++. ++|||+-|.|+|++++.++++ .||++|.|| +++..|
T Consensus 107 ~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~tpe~a~~al~--~GA~aVVVG-sAITrP 179 (192)
T PF04131_consen 107 NAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA---DVPVIAEGRIHTPEQAAKALE--LGAHAVVVG-SAITRP 179 (192)
T ss_dssp HHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT---TSEEEEESS--SHHHHHHHHH--TT-SEEEE--HHHH-H
T ss_pred HHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC---CCcEeecCCCCCHHHHHHHHh--cCCeEEEEC-cccCCH
Confidence 67889999984 4454443333 45799999999984 599999999999999999998 599999999 677888
Q ss_pred CchhH
Q 005508 566 WIFTE 570 (693)
Q Consensus 566 wiF~e 570 (693)
++..+
T Consensus 180 ~~It~ 184 (192)
T PF04131_consen 180 QEITK 184 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.7e-06 Score=83.27 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=82.0
Q ss_pred EEEecCCCCCC----hhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHH
Q 005508 468 TIKVRTGYFEG----KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWN 543 (693)
Q Consensus 468 tVKiR~G~~d~----~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~ 543 (693)
.|+..-||.+. ..+..++++.+.+.|++.|+|..-..... ....+++.+.++++.+ .+||+..|+|.|.+|+.
T Consensus 14 ~v~~~~G~~~~~~~~~~~~~~~a~~~~~~g~~~i~v~dld~~~~-g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~ 90 (233)
T PRK00748 14 CVRLYQGDYDQATVYSDDPVAQAKAWEDQGAKWLHLVDLDGAKA-GKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVE 90 (233)
T ss_pred EEEccccccccceEecCCHHHHHHHHHHcCCCEEEEEeCCcccc-CCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHH
Confidence 34444455443 23678999999999999999998643211 2347899999999988 69999999999999999
Q ss_pred HHHhcCCCcCEEEEcHHHhhCCCchhHHHhc
Q 005508 544 KHKSDCPELASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 544 ~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~ 574 (693)
+++. .|||.|++|+.++.+|.++.++.+.
T Consensus 91 ~~~~--~Ga~~vilg~~~l~~~~~l~ei~~~ 119 (233)
T PRK00748 91 ALLD--AGVSRVIIGTAAVKNPELVKEACKK 119 (233)
T ss_pred HHHH--cCCCEEEECchHHhCHHHHHHHHHH
Confidence 9877 5899999999999999888888664
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.8e-05 Score=78.48 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=106.7
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEec
Q 005508 395 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVR 472 (693)
Q Consensus 395 ~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR 472 (693)
-|+...+...+++.+.+.++.+. ..||..|-|++| .+++.-.++|++|++.+ +++|.+...
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDan 137 (265)
T cd03315 75 VRVAHMLGLGEPAEVAEEARRAL-EAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDAN 137 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHH-HCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 45556666667888888887776 469999999875 13466678889998887 567888888
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc
Q 005508 473 TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 552 (693)
Q Consensus 473 ~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga 552 (693)
.+|+ ..++.++++.|++.|+++|- |.+ ...+++..+++++.+ ++||++.+.+.++.++.+++.. ..+
T Consensus 138 ~~~~--~~~a~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~~-~~~ 204 (265)
T cd03315 138 RGWT--PKQAIRALRALEDLGLDYVE-------QPL-PADDLEGRAALARAT--DTPIMADESAFTPHDAFRELAL-GAA 204 (265)
T ss_pred CCcC--HHHHHHHHHHHHhcCCCEEE-------CCC-CcccHHHHHHHHhhC--CCCEEECCCCCCHHHHHHHHHh-CCC
Confidence 7885 57899999999999999883 333 235789999999988 6999999999999999998886 789
Q ss_pred CEEEE
Q 005508 553 ASCMI 557 (693)
Q Consensus 553 DgVMI 557 (693)
|.|++
T Consensus 205 d~v~~ 209 (265)
T cd03315 205 DAVNI 209 (265)
T ss_pred CEEEE
Confidence 99885
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.3e-05 Score=80.36 Aligned_cols=144 Identities=10% Similarity=0.114 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccC-----------ChHHHHHHHHHhccccccCEEE--Ee
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLT-----------KPMRMKGIIEATSGTVDKPITI--KV 471 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~-----------rp~~l~eIV~av~~~v~iPVtV--Ki 471 (693)
+.+.+.+.++.+. .+|+|.|+|++ |...-.-+|- ... +.+...++++.+++..++|+.+ ++
T Consensus 12 ~~~~~~~~~~~l~-~~Gad~iel~i--PfsdPv~DG~---~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~ 85 (242)
T cd04724 12 DLETTLEILKALV-EAGADIIELGI--PFSDPVADGP---VIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYY 85 (242)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECC--CCCCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 5578999999887 68999999997 6654433331 112 2457889999999887888655 43
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCCEEEEec---c-----------------------c---------c-c---------C
Q 005508 472 RTGYFEGKNRIDSLIADIGTWGASAVTVHG---R-----------------------T---------R-Q---------Q 506 (693)
Q Consensus 472 R~G~~d~~~~~~~la~~L~eaG~daItVHg---R-----------------------t---------r-~---------q 506 (693)
.+-+. .-...+++.+.++|++.|++|. - | . . .
T Consensus 86 n~~~~---~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~ 162 (242)
T cd04724 86 NPILQ---YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRT 162 (242)
T ss_pred CHHHH---hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCC
Confidence 32110 0125677778888888888721 0 0 0 0 0
Q ss_pred ccCC------CccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 507 RYSK------LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 507 ~ytg------~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
..+| ....+.|+++++.. ++||+.-|||.+.+++.+++. . ||+|.+|.+++
T Consensus 163 g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~--~-ADgvVvGSaiv 219 (242)
T cd04724 163 GVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAK--Y-ADGVIVGSALV 219 (242)
T ss_pred CCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHc--c-CCEEEECHHHH
Confidence 0111 11246788888865 799999999999999998664 5 99999997654
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.2e-06 Score=84.46 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccC-CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYS-KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~yt-g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
+..++++.+.+.|++.|++ |.....+. ...+++.|+++.+.. .+||+.+|||.|.+|+..++. .|||.|+||.
T Consensus 33 ~~~e~a~~~~~~G~~~l~i--~dl~~~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~--~Ga~~v~iGs 106 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHL--VDLDGAFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLD--LGVDRVILGT 106 (241)
T ss_pred CHHHHHHHHHHcCCCEEEE--EechhhhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHH--cCCCEEEECh
Confidence 5788999999999999854 44443332 246899999999988 699999999999999999886 6999999999
Q ss_pred HHhhCCCchhHHHhc
Q 005508 560 GALIKPWIFTEIKEQ 574 (693)
Q Consensus 560 gaL~nPwiF~eIke~ 574 (693)
.++.+|++|.++.+.
T Consensus 107 ~~~~~~~~~~~i~~~ 121 (241)
T PRK13585 107 AAVENPEIVRELSEE 121 (241)
T ss_pred HHhhChHHHHHHHHH
Confidence 999999999999775
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.3e-05 Score=83.15 Aligned_cols=141 Identities=9% Similarity=0.036 Sum_probs=111.1
Q ss_pred CCeEEEEecCC--CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEE
Q 005508 394 EDLFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITI 469 (693)
Q Consensus 394 e~p~gvQL~G~--~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtV 469 (693)
..|+...+.+. +++.+.++|+.+. ..||+.|.|.+|.... +.+++++..++|+++++.+ +++|.|
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~-~~Gf~~~Kik~g~~~~----------~~~~~~~d~~~v~~ir~~~g~~~~l~v 194 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAV-AEGFTAVKLKVGGPDS----------GGEDLREDLARVRAVREAVGPDVDLMV 194 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHH-HcCCCEEEEcCCCCCc----------chHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 34455555444 5999999998887 5799999999875321 1177889999999999987 678888
Q ss_pred EecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 005508 470 KVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 549 (693)
Q Consensus 470 KiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 549 (693)
...-+|+ .+++.++++.|++.|+.+|- |.. .+.+++..+.+++.+ ++||++.+.+++++++.+++..
T Consensus 195 DaN~~~~--~~~a~~~~~~l~~~~i~~iE-------qP~-~~~~~~~~~~l~~~~--~ipi~~dE~~~~~~~~~~~i~~- 261 (357)
T cd03316 195 DANGRWD--LAEAIRLARALEEYDLFWFE-------EPV-PPDDLEGLARLRQAT--SVPIAAGENLYTRWEFRDLLEA- 261 (357)
T ss_pred ECCCCCC--HHHHHHHHHHhCccCCCeEc-------CCC-CccCHHHHHHHHHhC--CCCEEeccccccHHHHHHHHHh-
Confidence 8877774 57899999999999888763 222 234788889999987 6999999999999999999986
Q ss_pred CCcCEEEEc
Q 005508 550 PELASCMIA 558 (693)
Q Consensus 550 ~gaDgVMIG 558 (693)
..+|.|.+-
T Consensus 262 ~~~d~v~~k 270 (357)
T cd03316 262 GAVDIIQPD 270 (357)
T ss_pred CCCCEEecC
Confidence 779998753
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.1e-05 Score=78.67 Aligned_cols=157 Identities=12% Similarity=0.141 Sum_probs=104.5
Q ss_pred eEEEEecCC--CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCC------cccccc--CChHHHHHHHHHhccc-cc
Q 005508 396 LFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG------AGSCLL--TKPMRMKGIIEATSGT-VD 464 (693)
Q Consensus 396 p~gvQL~G~--~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G------~GsaLl--~rp~~l~eIV~av~~~-v~ 464 (693)
.|+.=|... +.+...++++.+. +.|+|.||| |=|.+.-.-|| +--+|- -+.+.+.++++++++. .+
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~-~~Gad~iEl--GiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~ 87 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLI-EAGADALEL--GVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPN 87 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEE--CCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 455555554 5677888888877 679999999 55654322222 111111 2456788999999876 68
Q ss_pred cCEEEEecCCCCCC--hhHHHHHHHHHHHcCCCEEEEecc--------------------------c-----------c-
Q 005508 465 KPITIKVRTGYFEG--KNRIDSLIADIGTWGASAVTVHGR--------------------------T-----------R- 504 (693)
Q Consensus 465 iPVtVKiR~G~~d~--~~~~~~la~~L~eaG~daItVHgR--------------------------t-----------r- 504 (693)
+|+.. +++.+. .--..++++.+.++|++.|++|.= | .
T Consensus 88 ~plv~---m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 88 IPIGL---LTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred CCEEE---EEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCC
Confidence 88653 222211 012356777778888888877630 0 0
Q ss_pred -------cCccCCC------ccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 505 -------QQRYSKL------ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 505 -------~q~ytg~------Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
..+++|. ...++++++++.. ++||+.-|||.|++++.+++. .|||+|.+|++++
T Consensus 165 gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~--~GADgvVvGSaiv 231 (256)
T TIGR00262 165 GFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAID--AGADGVIVGSAIV 231 (256)
T ss_pred CCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHH--cCCCEEEECHHHH
Confidence 0123332 2478889999887 689999999999999999776 5899999999874
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00011 Score=75.50 Aligned_cols=136 Identities=12% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEe----------
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKV---------- 471 (693)
Q Consensus 403 G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKi---------- 471 (693)
|....++..+.+++. +|+|-|-||. +-+.+|+++.++-+..-..+ =+-|-.|-
T Consensus 80 GGGI~s~eD~~~ll~--aGADKVSINs--------------aAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~ 143 (256)
T COG0107 80 GGGIRSVEDARKLLR--AGADKVSINS--------------AAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYE 143 (256)
T ss_pred cCCcCCHHHHHHHHH--cCCCeeeeCh--------------hHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEE
Confidence 555555555566664 7999999993 45689999988888764432 23334444
Q ss_pred ---cCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhc
Q 005508 472 ---RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD 548 (693)
Q Consensus 472 ---R~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~ 548 (693)
+.|-.+...++.++++.+++.|+--|-|..-.+.+.-.| .|++.++.+++.+ +||||++||.-++++..+.+..
T Consensus 144 v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~G-yDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~~ 220 (256)
T COG0107 144 VFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAG-YDLELTRAVREAV--NIPVIASGGAGKPEHFVEAFTE 220 (256)
T ss_pred EEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccC-cCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHHh
Confidence 334334456799999999999999999987665544434 7999999999999 7999999999999999999987
Q ss_pred CCCcCEEEEc
Q 005508 549 CPELASCMIA 558 (693)
Q Consensus 549 ~~gaDgVMIG 558 (693)
+.||++..|
T Consensus 221 -~~adAaLAA 229 (256)
T COG0107 221 -GKADAALAA 229 (256)
T ss_pred -cCccHHHhh
Confidence 789988765
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.8e-05 Score=84.68 Aligned_cols=195 Identities=12% Similarity=0.095 Sum_probs=117.6
Q ss_pred ccCCccccCcEEEccCCCCCcHHHHHHHHH-cCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCC-----
Q 005508 332 EKKLIDFREKLYLAPLTTVGNLPFRRVCKV-LGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAY----- 405 (693)
Q Consensus 332 ek~~l~lknriiLAPMt~v~dlpFRrl~~~-~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~----- 405 (693)
-...+.++-+|+.+||..+++...---+.+ .|.+ +++-.......+ .+|..--+.....|+.++.+++.
T Consensus 7 ~~~~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG-~ia~~~~~~e~l----~~~i~~~~~~~~~p~~~~~f~~~~~~v~ 81 (336)
T COG2070 7 FILLLGIKYPIIQGGMAGVSTPELAAAVSNAGGLG-IIASGGLPAEQL----RAEIRKIRALTDKPFVANNFGSAPAPVN 81 (336)
T ss_pred hhcccCccCCeecCCccccCcHHHHHHHhccCCcc-ccccccCCHHHH----HHHHHHHHHhcCCcchhcccccccccch
Confidence 345566778999999999998766444433 3455 322222111111 11111011122345444444421
Q ss_pred -------HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCC
Q 005508 406 -------PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG 478 (693)
Q Consensus 406 -------pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~ 478 (693)
...+...+..+.+.+|+-.+-..+|= .|. ++|..+.. .++.|.+++-.
T Consensus 82 ~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~----------------~~~---~~i~~~~~-~g~~v~~~v~~----- 136 (336)
T COG2070 82 VNILVARRNAAEAGVDAIIEGAGVPVVSTSFGA----------------PPA---EFVARLKA-AGIKVIHSVIT----- 136 (336)
T ss_pred hheecccccchHHhhhhHHhcCCCCEEeccCCC----------------CcH---HHHHHHHH-cCCeEEEEeCC-----
Confidence 13333444444434455555554442 122 23333333 45666665543
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecccccCccC----CCccHHHHHHHHHHcCCC-ceEEEeCCCCCHHHHHHHHhcCCCcC
Q 005508 479 KNRIDSLIADIGTWGASAVTVHGRTRQQRYS----KLADWDYIYQCARKASDD-LQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 479 ~~~~~~la~~L~eaG~daItVHgRtr~q~yt----g~Adw~~I~~i~~~~~~~-IPVIgNGdI~s~eDa~~~l~~~~gaD 553 (693)
...+.+.++.|+|+|.++|-...+.-. .+.-...+.++++.+ + ||||+.|+|.|.+++..++. -|||
T Consensus 137 ----~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI~dg~~i~AAla--lGA~ 208 (336)
T COG2070 137 ----VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGIADGRGIAAALA--LGAD 208 (336)
T ss_pred ----HHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCccChHHHHHHHH--hccH
Confidence 578899999999999998764322211 223467899999999 6 99999999999999999998 4999
Q ss_pred EEEEcHHHhhC
Q 005508 554 SCMIARGALIK 564 (693)
Q Consensus 554 gVMIGRgaL~n 564 (693)
+|.+|..+|.-
T Consensus 209 gVq~GT~Fl~t 219 (336)
T COG2070 209 GVQMGTRFLAT 219 (336)
T ss_pred HHHhhhhhhcc
Confidence 99999988763
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.6e-05 Score=86.43 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=92.3
Q ss_pred cCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChh
Q 005508 402 CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKN 480 (693)
Q Consensus 402 ~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~ 480 (693)
.|..++.+.++..++ ++|+|.|.|++.- | +.....+.|+.+++.. ++||.++ .-
T Consensus 236 vg~~~~~~~~~~~l~--~ag~d~i~id~a~--------G-------~s~~~~~~i~~ik~~~~~~~v~aG----~V---- 290 (495)
T PTZ00314 236 ISTRPEDIERAAALI--EAGVDVLVVDSSQ--------G-------NSIYQIDMIKKLKSNYPHVDIIAG----NV---- 290 (495)
T ss_pred ECCCHHHHHHHHHHH--HCCCCEEEEecCC--------C-------CchHHHHHHHHHHhhCCCceEEEC----Cc----
Confidence 366777776666655 4799999999741 1 2344567888888775 6777772 11
Q ss_pred HHHHHHHHHHHcCCCEEEEe--cc----cccCccCCCccHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 005508 481 RIDSLIADIGTWGASAVTVH--GR----TRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVH--gR----tr~q~ytg~Adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaD 553 (693)
...+-++.+.++|+|+|.+- +. |+...-.+.+.+..+.+|++.+. .++|||+.|+|.++.|+.+++. .|||
T Consensus 291 ~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla--~GA~ 368 (495)
T PTZ00314 291 VTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALA--LGAD 368 (495)
T ss_pred CCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH--cCCC
Confidence 12456777889999999862 22 12111223445566666654431 1699999999999999999998 5999
Q ss_pred EEEEcHHHhh
Q 005508 554 SCMIARGALI 563 (693)
Q Consensus 554 gVMIGRgaL~ 563 (693)
+||||+.+..
T Consensus 369 ~Vm~G~~~a~ 378 (495)
T PTZ00314 369 CVMLGSLLAG 378 (495)
T ss_pred EEEECchhcc
Confidence 9999998655
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.1e-05 Score=85.75 Aligned_cols=142 Identities=18% Similarity=0.098 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhH
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 403 G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~ 481 (693)
+-.++.+.++..++. +|+|.|.|++.-. +...+.+.|+.+++.. ++||.++-=.
T Consensus 220 ~~~~~~~~r~~~L~~--aG~d~I~vd~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~G~v~-------- 274 (450)
T TIGR01302 220 GTREFDKERAEALVK--AGVDVIVIDSSHG---------------HSIYVIDSIKEIKKTYPDLDIIAGNVA-------- 274 (450)
T ss_pred cCchhHHHHHHHHHH--hCCCEEEEECCCC---------------cHhHHHHHHHHHHHhCCCCCEEEEeCC--------
Confidence 445677878776654 7999999986431 2346778888888875 8898884332
Q ss_pred HHHHHHHHHHcCCCEEEEe--cc----cccCccCCCccHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCE
Q 005508 482 IDSLIADIGTWGASAVTVH--GR----TRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELAS 554 (693)
Q Consensus 482 ~~~la~~L~eaG~daItVH--gR----tr~q~ytg~Adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDg 554 (693)
..+-++.|.++|+|+|-|. +. |+...-.+.+.+..+.+|++.+. .++|||+.|||.++.|+.++|. .|||+
T Consensus 275 t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla--~GA~~ 352 (450)
T TIGR01302 275 TAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALA--AGADA 352 (450)
T ss_pred CHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH--cCCCE
Confidence 2456777888999999763 22 22222234445667777765431 1699999999999999999998 59999
Q ss_pred EEEcHHHhhCCCchhHH
Q 005508 555 CMIARGALIKPWIFTEI 571 (693)
Q Consensus 555 VMIGRgaL~nPwiF~eI 571 (693)
||+|+.+..-.+..-++
T Consensus 353 V~~G~~~a~~~e~pg~~ 369 (450)
T TIGR01302 353 VMLGSLLAGTTESPGEY 369 (450)
T ss_pred EEECchhhcCCcCCCce
Confidence 99998877665544443
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00021 Score=74.97 Aligned_cols=197 Identities=13% Similarity=0.067 Sum_probs=114.4
Q ss_pred cCcEEEccCCCCCcHH-HHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHH-------HHH
Q 005508 339 REKLYLAPLTTVGNLP-FRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPD-------TLA 410 (693)
Q Consensus 339 knriiLAPMt~v~dlp-FRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe-------~~~ 410 (693)
.+.+...|+.+.-+.. +-+.+.++|++-++.-......... ....+.++++.|.+..|. .+.
T Consensus 24 Dh~~l~gp~~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 93 (258)
T TIGR01949 24 DHGVSNGPIKGLVDIRKTVNEVAEGGADAVLLHKGIVRRGHR----------GYGKDVGLIIHLSASTSLSPDPNDKRIV 93 (258)
T ss_pred CCccccCCCCCcCCHHHHHHHHHhcCCCEEEeCcchhhhccc----------ccCCCCcEEEEEcCCCCCCCCCCcceee
Confidence 3444444777766542 2222345788766543322222100 012344566777443221 233
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc---ccCEEEEec-----CCCCCChhHH
Q 005508 411 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV---DKPITIKVR-----TGYFEGKNRI 482 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v---~iPVtVKiR-----~G~~d~~~~~ 482 (693)
..++.+. ..|+|+|++-. + .|+ ....+.+ +.++++++.+ ++||.|.+- ++. .+....
T Consensus 94 ~~v~~al-~~Ga~~v~~~~--------~--~g~--~~~~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~-~~~~~~ 158 (258)
T TIGR01949 94 TTVEDAI-RMGADAVSIHV--------N--VGS--DTEWEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDD-RDPELV 158 (258)
T ss_pred eeHHHHH-HCCCCEEEEEE--------e--cCC--chHHHHH-HHHHHHHHHHHHcCCCEEEEEeccCccccc-ccHHHH
Confidence 3344444 46999999843 1 111 1122333 4555565543 788877432 222 122334
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCC--CHHHHHHHHh---cCCCcCEEEE
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY--SYLDWNKHKS---DCPELASCMI 557 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~--s~eDa~~~l~---~~~gaDgVMI 557 (693)
...++...+.|+|+|-+. |. .+.+.++++.+.. ++||++.|||. |.+++.+.+. + .||+||.+
T Consensus 159 ~~~~~~a~~~GADyikt~-------~~--~~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~-aGa~Gia~ 226 (258)
T TIGR01949 159 AHAARLGAELGADIVKTP-------YT--GDIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAME-AGAAGVAV 226 (258)
T ss_pred HHHHHHHHHHCCCEEecc-------CC--CCHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHH-cCCcEEeh
Confidence 444677788999999874 22 3788899998877 69999999999 7666655442 3 69999999
Q ss_pred cHHHhhCCCchhHHH
Q 005508 558 ARGALIKPWIFTEIK 572 (693)
Q Consensus 558 GRgaL~nPwiF~eIk 572 (693)
||.++..+....-++
T Consensus 227 g~~i~~~~dp~~~~~ 241 (258)
T TIGR01949 227 GRNIFQHDDPVGITK 241 (258)
T ss_pred hhHhhcCCCHHHHHH
Confidence 999998877554443
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0001 Score=73.77 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=97.4
Q ss_pred EEecCCCHHHHHHHHHHHhhhCCCcEEEEc-CCCCCcccccCCccccccCChHHHHHHHHHhccccccCEE--EEecCCC
Q 005508 399 VQICGAYPDTLARTVELIDQQCTVDFIDIN-MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT--IKVRTGY 475 (693)
Q Consensus 399 vQL~G~~pe~~~~AA~~~~~~aG~D~IDLN-~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVt--VKiR~G~ 475 (693)
+.|...++..+.+.++.+. ..|+|.|++- +-+|.- .+.....++++.+++..+.|+. ++++-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~g~d~i~~~~~Dg~~~------------~~~~~~~~~v~~i~~~~~~~v~v~lm~~~-- 67 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVE-EAGADWIHVDVMDGHFV------------PNLTFGPPVLEALRKYTDLPIDVHLMVEN-- 67 (210)
T ss_pred chhhcCCHHHHHHHHHHHH-HcCCCEEEEcCCCCCCC------------CCcccCHHHHHHHHhcCCCcEEEEeeeCC--
Confidence 5677888999999999887 6899999996 222221 1222345667777665566753 44441
Q ss_pred CCChhHHHHHHHHHHHcCCCEEEEecccc--------------------------c-------------------CccCC
Q 005508 476 FEGKNRIDSLIADIGTWGASAVTVHGRTR--------------------------Q-------------------QRYSK 510 (693)
Q Consensus 476 ~d~~~~~~~la~~L~eaG~daItVHgRtr--------------------------~-------------------q~ytg 510 (693)
..++++.+.++|++.|++|+... . ...++
T Consensus 68 ------~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg 141 (210)
T TIGR01163 68 ------PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGG 141 (210)
T ss_pred ------HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCc
Confidence 24567777788889888886420 0 00112
Q ss_pred -CccHH---HHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHH
Q 005508 511 -LADWD---YIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 511 -~Adw~---~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIk 572 (693)
..+|. .+.++++.+. .++||+.-|||. ++.+.+++. .|||+|.+||++...+++...++
T Consensus 142 ~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~--~gad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 142 QKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAE--AGADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHH--cCCCEEEEChHHhCCCCHHHHHH
Confidence 12343 3444444331 027999999995 799988775 69999999999998787655543
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.7e-05 Score=86.39 Aligned_cols=132 Identities=15% Similarity=0.103 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHH
Q 005508 407 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLI 486 (693)
Q Consensus 407 e~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la 486 (693)
+.+.++..++ ++|+|.|.|- .. .| ....+.+.|+.+++.++.++.|+--. -...+-+
T Consensus 242 ~~~~ra~~Lv--~aGvd~i~vd--~a------~g-------~~~~~~~~i~~ir~~~~~~~~V~aGn------V~t~e~a 298 (502)
T PRK07107 242 DYAERVPALV--EAGADVLCID--SS------EG-------YSEWQKRTLDWIREKYGDSVKVGAGN------VVDREGF 298 (502)
T ss_pred hHHHHHHHHH--HhCCCeEeec--Cc------cc-------ccHHHHHHHHHHHHhCCCCceEEecc------ccCHHHH
Confidence 3445555444 4799999985 11 12 23445788888888775555554432 1124556
Q ss_pred HHHHHcCCCEEEE--ecc----cccCccCCCccHHHHHHHHHHc-------CCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 005508 487 ADIGTWGASAVTV--HGR----TRQQRYSKLADWDYIYQCARKA-------SDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 487 ~~L~eaG~daItV--HgR----tr~q~ytg~Adw~~I~~i~~~~-------~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 553 (693)
+.|.++|+|+|.| |+. ||.+.-.+.+-+..|.+|++++ ...+|||+-|||.+.-|+.++|. .|||
T Consensus 299 ~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla--~GA~ 376 (502)
T PRK07107 299 RYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA--MGAD 376 (502)
T ss_pred HHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH--cCCC
Confidence 7777899999987 444 3445545667788888888764 22389999999999999999997 5999
Q ss_pred EEEEcHHHhh
Q 005508 554 SCMIARGALI 563 (693)
Q Consensus 554 gVMIGRgaL~ 563 (693)
+|||||.+-.
T Consensus 377 ~vm~G~~~ag 386 (502)
T PRK07107 377 FIMLGRYFAR 386 (502)
T ss_pred eeeeChhhhc
Confidence 9999998765
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00015 Score=80.04 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHH
Q 005508 406 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSL 485 (693)
Q Consensus 406 pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~l 485 (693)
+..+.+-++.+. ++|+|.|-|+..- +...+++.- .++..+.++++. .++||.+.- . . ..+.
T Consensus 140 ~~~~~e~a~~l~-eaGvd~I~vhgrt-----~~~~h~~~~-~~~~~i~~~ik~----~~ipVIaG~---V-~----t~e~ 200 (368)
T PRK08649 140 PQRAQELAPTVV-EAGVDLFVIQGTV-----VSAEHVSKE-GEPLNLKEFIYE----LDVPVIVGG---C-V----TYTT 200 (368)
T ss_pred CcCHHHHHHHHH-HCCCCEEEEeccc-----hhhhccCCc-CCHHHHHHHHHH----CCCCEEEeC---C-C----CHHH
Confidence 344455566665 6899999997421 111221110 145555555554 378987721 1 1 2345
Q ss_pred HHHHHHcCCCEEEEecccccCccC-------CCccHHHHHHHHHHc--------CCCceEEEeCCCCCHHHHHHHHhcCC
Q 005508 486 IADIGTWGASAVTVHGRTRQQRYS-------KLADWDYIYQCARKA--------SDDLQVLGNGDIYSYLDWNKHKSDCP 550 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr~q~yt-------g~Adw~~I~~i~~~~--------~~~IPVIgNGdI~s~eDa~~~l~~~~ 550 (693)
+..+.++|||+|.+ ||......+ +.+-+..|.++++.. ..++|||+.|+|.+..|+.++|. .
T Consensus 201 A~~l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAla--l 277 (368)
T PRK08649 201 ALHLMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIA--C 277 (368)
T ss_pred HHHHHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHH--c
Confidence 66677799999977 543211111 223455566665431 01489999999999999999997 5
Q ss_pred CcCEEEEcHHHhhC
Q 005508 551 ELASCMIARGALIK 564 (693)
Q Consensus 551 gaDgVMIGRgaL~n 564 (693)
|||+||+|+.++.-
T Consensus 278 GAd~Vm~Gs~fa~t 291 (368)
T PRK08649 278 GADAVMLGSPLARA 291 (368)
T ss_pred CCCeecccchhccc
Confidence 99999999999873
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00014 Score=83.92 Aligned_cols=166 Identities=15% Similarity=0.129 Sum_probs=111.5
Q ss_pred hhhhhccCCCCeEEEEecCCCHH--H--------HHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHH
Q 005508 385 WALLRRHSSEDLFGVQICGAYPD--T--------LARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKG 454 (693)
Q Consensus 385 ~~ll~~h~~e~p~gvQL~G~~pe--~--------~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~e 454 (693)
..+++.-..+.-+-+|+.|.--. + +..+.+++ .+|+|-|=||..--..- ..-+-++-..+|+++.+
T Consensus 303 ~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l--~~GadkV~i~s~Av~~~--~~~~~~~~~~~p~~i~~ 378 (538)
T PLN02617 303 LEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYF--RSGADKISIGSDAVYAA--EEYIASGVKTGKTSIEQ 378 (538)
T ss_pred HHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHH--HcCCCEEEEChHHHhCh--hhhhccccccCHHHHHH
Confidence 33444333333345788775322 2 33444444 47999999985211000 00011123457899999
Q ss_pred HHHHhccc-cccCEE---------------------------------EEecCCCCCChhHHHHHHHHHHHcCCCEEEEe
Q 005508 455 IIEATSGT-VDKPIT---------------------------------IKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 500 (693)
Q Consensus 455 IV~av~~~-v~iPVt---------------------------------VKiR~G~~d~~~~~~~la~~L~eaG~daItVH 500 (693)
+.+..-.. +-+-|- |.+.-|-....-++.++++.+++.|+..|.+.
T Consensus 379 ~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t 458 (538)
T PLN02617 379 ISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLN 458 (538)
T ss_pred HHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 99987332 211111 33332222234578999999999999999998
Q ss_pred cccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 501 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 501 gRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
.-.+.+...| .|.+.++++++.+ +||||++||+.+++|+.+++.. +++|+++.|
T Consensus 459 ~id~DGt~~G-~d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~-~~~~a~~aa 512 (538)
T PLN02617 459 CIDCDGQGKG-FDIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSK-TNASAALAA 512 (538)
T ss_pred eccccccccC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhc-CCccEEEEE
Confidence 8888877766 7899999999998 7999999999999999999986 789999988
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.7e-05 Score=85.02 Aligned_cols=131 Identities=14% Similarity=0.074 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEE-ecCCCCCChh
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIK-VRTGYFEGKN 480 (693)
Q Consensus 403 G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVK-iR~G~~d~~~ 480 (693)
|..++.+.++..++. +|+|.|-|.+. . .+...+.++|+.+++.. +.+|.++ +-+
T Consensus 244 g~~~~~~~r~~~l~~--ag~d~i~iD~~--~-------------g~~~~~~~~i~~ik~~~p~~~vi~g~v~t------- 299 (505)
T PLN02274 244 GTRESDKERLEHLVK--AGVDVVVLDSS--Q-------------GDSIYQLEMIKYIKKTYPELDVIGGNVVT------- 299 (505)
T ss_pred cCCccHHHHHHHHHH--cCCCEEEEeCC--C-------------CCcHHHHHHHHHHHHhCCCCcEEEecCCC-------
Confidence 456777777777664 79999888652 1 13455678899998877 5777664 322
Q ss_pred HHHHHHHHHHHcCCCEEEE--ecc----cccC---ccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCC
Q 005508 481 RIDSLIADIGTWGASAVTV--HGR----TRQQ---RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 551 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItV--HgR----tr~q---~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g 551 (693)
.+-+..+.++|+|+|.+ |.. |+.. .+.....+..+.++++.. ++|||+-|+|.+..|+.++|. .|
T Consensus 300 --~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~vpVIadGGI~~~~di~kAla--~G 373 (505)
T PLN02274 300 --MYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH--GVPVIADGGISNSGHIVKALT--LG 373 (505)
T ss_pred --HHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHH--cC
Confidence 45577888999999976 333 2210 111223555677777776 699999999999999999998 59
Q ss_pred cCEEEEcHHHhh
Q 005508 552 LASCMIARGALI 563 (693)
Q Consensus 552 aDgVMIGRgaL~ 563 (693)
||+||||..+..
T Consensus 374 A~~V~vGs~~~~ 385 (505)
T PLN02274 374 ASTVMMGSFLAG 385 (505)
T ss_pred CCEEEEchhhcc
Confidence 999999987765
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00046 Score=72.64 Aligned_cols=186 Identities=16% Similarity=0.147 Sum_probs=117.5
Q ss_pred HcCCCEEEecccccchhccC-Chhhhhhhh------ccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCC
Q 005508 361 VLGADVTCGEMAMCTNLLQG-QASEWALLR------RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPI 433 (693)
Q Consensus 361 ~~Gadl~~TEM~~a~~ll~g-~~~e~~ll~------~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~ 433 (693)
+.|+|-++-|-....|+... .+.+.+.+. +..-..|+|||+.-+++......|. .+|+|||-+|.-|=.
T Consensus 39 ~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~----a~ga~FIRv~~~~g~ 114 (257)
T TIGR00259 39 EGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIAM----AVGAKFIRVNVLTGV 114 (257)
T ss_pred hCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHHH----HhCCCEEEEccEeee
Confidence 35999888898888887542 222222221 2233458999999988764433332 458999999865432
Q ss_pred cccccCCccccccCChHHHHHHHHHhcccccc--CEEEEecCCCCCChhHHHHHHHHHHHcC-CCEEEEecccccCccCC
Q 005508 434 DIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK--PITIKVRTGYFEGKNRIDSLIADIGTWG-ASAVTVHGRTRQQRYSK 510 (693)
Q Consensus 434 ~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~i--PVtVKiR~G~~d~~~~~~~la~~L~eaG-~daItVHgRtr~q~ytg 510 (693)
. +...| -+..+...+.+.-+.+...+.+ -|-+|-.. .-......+.++.....| +|+|+|.|... ..
T Consensus 115 ~-~~d~G---~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~--~l~~~~~~e~a~~~~~~~~aDavivtG~~T----G~ 184 (257)
T TIGR00259 115 Y-ASDQG---IIEGNAGELIRYKKLLGSEVKILADIVVKHAV--HLGNRDLESIALDTVERGLADAVILSGKTT----GT 184 (257)
T ss_pred E-ecccc---cccccHHHHHHHHHHcCCCcEEEeceeecccC--cCCCCCHHHHHHHHHHhcCCCEEEECcCCC----CC
Confidence 2 22222 2333455555555555532221 22333332 111234556666655555 99999998753 23
Q ss_pred CccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 511 LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 511 ~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
+.+|+.+.++++..+ ++||+.+||| +++.+.+++.. +|||.||.++= +|-
T Consensus 185 ~~d~~~l~~vr~~~~-~~PvllggGv-t~eNv~e~l~~---adGviVgS~~K-~~G 234 (257)
T TIGR00259 185 EVDLELLKLAKETVK-DTPVLAGSGV-NLENVEELLSI---ADGVIVATTIK-KDG 234 (257)
T ss_pred CCCHHHHHHHHhccC-CCeEEEECCC-CHHHHHHHHhh---CCEEEECCCcc-cCC
Confidence 579999999998665 6899999999 88999888863 99999998864 444
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00017 Score=76.23 Aligned_cols=158 Identities=15% Similarity=0.202 Sum_probs=104.8
Q ss_pred eEEEEecCC--CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCC------ccccccC--ChHHHHHHHHHhcccccc
Q 005508 396 LFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG------AGSCLLT--KPMRMKGIIEATSGTVDK 465 (693)
Q Consensus 396 p~gvQL~G~--~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G------~GsaLl~--rp~~l~eIV~av~~~v~i 465 (693)
.|+.=|... +.+.+.+++..+. +.|+|.||| |=|.+.-.-|| +--+|-+ +.+.+.++++.+++..++
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~-~~Gad~iEl--GiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~ 92 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILD-KKGADIIEL--GIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKA 92 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH-HCCCCEEEE--CCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCC
Confidence 466666555 4577888888777 679999999 55654322222 1112221 456788899999877888
Q ss_pred CEEEEecCCCCCCh--hHHHHHHHHHHHcCCCEEEEecc--------------------------cc----------c--
Q 005508 466 PITIKVRTGYFEGK--NRIDSLIADIGTWGASAVTVHGR--------------------------TR----------Q-- 505 (693)
Q Consensus 466 PVtVKiR~G~~d~~--~~~~~la~~L~eaG~daItVHgR--------------------------tr----------~-- 505 (693)
|+.+ +++.+.. --..++++.+.++|++.|.||.= |. .
T Consensus 93 p~vl---m~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~g 169 (263)
T CHL00200 93 PIVI---FTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPG 169 (263)
T ss_pred CEEE---EecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCC
Confidence 9753 3332210 12356777788888888887631 00 0
Q ss_pred -------CccCCCc------cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 506 -------QRYSKLA------DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 506 -------q~ytg~A------dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
.+.||.. --+++.++++.+ ++||..-+||.+++++.++.. .|||||.||.+++.
T Consensus 170 FIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~--~GADGvVVGSalv~ 236 (263)
T CHL00200 170 CIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKG--WNINGIVIGSACVQ 236 (263)
T ss_pred cEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHh--cCCCEEEECHHHHH
Confidence 1112221 135778888876 799999999999999999665 58999999999864
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00032 Score=71.57 Aligned_cols=130 Identities=9% Similarity=0.041 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCC------C-----
Q 005508 407 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG------Y----- 475 (693)
Q Consensus 407 e~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G------~----- 475 (693)
+++.+.|..+. ++|.|+|.|- ++.--+.+.+.++++++++.+++||.+=.... .
T Consensus 11 e~~~~ia~~v~-~~gtDaI~VG--------------GS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~ 75 (205)
T TIGR01769 11 DEIEKIAKNAK-DAGTDAIMVG--------------GSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFF 75 (205)
T ss_pred HHHHHHHHHHH-hcCCCEEEEc--------------CcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEE
Confidence 44566666666 6799999882 22334678888888888887788887632210 0
Q ss_pred ------------------------------------------------------CCChhHHHHHHHHHHHcCCCEEEEec
Q 005508 476 ------------------------------------------------------FEGKNRIDSLIADIGTWGASAVTVHG 501 (693)
Q Consensus 476 ------------------------------------------------------~d~~~~~~~la~~L~eaG~daItVHg 501 (693)
+...+++..++...+-.|+..|.+-.
T Consensus 76 ~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~ 155 (205)
T TIGR01769 76 MSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEA 155 (205)
T ss_pred EEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 00122344444444555555555532
Q ss_pred ccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 502 RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 502 Rtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
-+. +..+.+.++++++++.+ ++||+..|||.|.+++++++. .|||+|.+|
T Consensus 156 ~sG---a~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~--~GAD~VVVG 205 (205)
T TIGR01769 156 GSG---ASYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVL--AGADAIVTG 205 (205)
T ss_pred CCC---CCCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHH--cCCCEEEeC
Confidence 221 12335689999999988 799999999999999999776 479999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00073 Score=71.20 Aligned_cols=178 Identities=12% Similarity=0.101 Sum_probs=114.9
Q ss_pred HHHHHHHcCCCEE--EecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 005508 355 FRRVCKVLGADVT--CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCP 432 (693)
Q Consensus 355 FRrl~~~~Gadl~--~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP 432 (693)
+-+.+...||+.+ .||.- ...|+......++.. ..-|+...=+-.++.+... +. .+|+|+|=|.+
T Consensus 75 ~A~~~~~~GA~aisvlte~~----~f~g~~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~----a~-~~GAD~VlLi~--- 141 (260)
T PRK00278 75 IAKAYEAGGAACLSVLTDER----FFQGSLEYLRAARAA-VSLPVLRKDFIIDPYQIYE----AR-AAGADAILLIV--- 141 (260)
T ss_pred HHHHHHhCCCeEEEEecccc----cCCCCHHHHHHHHHh-cCCCEEeeeecCCHHHHHH----HH-HcCCCEEEEEe---
Confidence 3344456788754 23332 222333333333332 3456665444445553322 22 47999998853
Q ss_pred CcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCc
Q 005508 433 IDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLA 512 (693)
Q Consensus 433 ~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~A 512 (693)
+.+ ++..+.++++..+. .+.-+.|=+.. .. ++ .++.+.|++.|-+|+|... +-..
T Consensus 142 -----------~~l-~~~~l~~li~~a~~-lGl~~lvevh~-----~~---E~-~~A~~~gadiIgin~rdl~---~~~~ 196 (260)
T PRK00278 142 -----------AAL-DDEQLKELLDYAHS-LGLDVLVEVHD-----EE---EL-ERALKLGAPLIGINNRNLK---TFEV 196 (260)
T ss_pred -----------ccC-CHHHHHHHHHHHHH-cCCeEEEEeCC-----HH---HH-HHHHHcCCCEEEECCCCcc---cccC
Confidence 122 35678888887765 46666664443 12 22 4456789999999988753 2245
Q ss_pred cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHH
Q 005508 513 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 513 dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIk 572 (693)
+.+.+.++.+..+..+|+|+-|||.+++++.+++. .|+|+|.||++++..+.+-..++
T Consensus 197 d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~--~Gad~vlVGsaI~~~~dp~~~~~ 254 (260)
T PRK00278 197 DLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAK--AGADAVLVGESLMRADDPGAALR 254 (260)
T ss_pred CHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHH--cCCCEEEECHHHcCCCCHHHHHH
Confidence 68888888887764479999999999999999876 59999999999998877654443
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00011 Score=81.08 Aligned_cols=137 Identities=16% Similarity=0.158 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHH
Q 005508 406 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSL 485 (693)
Q Consensus 406 pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~l 485 (693)
+....+.++.+. ++|+|.|-|+. ..+...+.+. -.+|..+.++++. +++||.+.- . .+ .+.
T Consensus 141 ~~~~~e~a~~l~-eAGad~I~ihg-----rt~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~G~---V-~t----~e~ 201 (369)
T TIGR01304 141 PQNAREIAPIVV-KAGADLLVIQG-----TLVSAEHVST-SGEPLNLKEFIGE----LDVPVIAGG---V-ND----YTT 201 (369)
T ss_pred CcCHHHHHHHHH-HCCCCEEEEec-----cchhhhccCC-CCCHHHHHHHHHH----CCCCEEEeC---C-CC----HHH
Confidence 345556666666 68999999973 1122233111 1246666666654 478998721 1 11 234
Q ss_pred HHHHHHcCCCEEEEecccc---cCccC--CCccHHHHHHHHHH-------cC-CCceEEEeCCCCCHHHHHHHHhcCCCc
Q 005508 486 IADIGTWGASAVTVHGRTR---QQRYS--KLADWDYIYQCARK-------AS-DDLQVLGNGDIYSYLDWNKHKSDCPEL 552 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr---~q~yt--g~Adw~~I~~i~~~-------~~-~~IPVIgNGdI~s~eDa~~~l~~~~ga 552 (693)
+..+.++|+|+|.+ ||.. ...+. +......|.++++. .. ..+|||+.|+|.+..|+.++|. .||
T Consensus 202 A~~~~~aGaDgV~~-G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlA--lGA 278 (369)
T TIGR01304 202 ALHLMRTGAAGVIV-GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIA--CGA 278 (369)
T ss_pred HHHHHHcCCCEEEE-CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH--cCC
Confidence 55555699999983 3321 11111 23344556666543 21 1399999999999999999997 599
Q ss_pred CEEEEcHHHhhC
Q 005508 553 ASCMIARGALIK 564 (693)
Q Consensus 553 DgVMIGRgaL~n 564 (693)
|+||||+.++.=
T Consensus 279 daV~iGt~~a~a 290 (369)
T TIGR01304 279 DAVVLGSPLARA 290 (369)
T ss_pred CEeeeHHHHHhh
Confidence 999999998753
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.2e-05 Score=82.16 Aligned_cols=147 Identities=20% Similarity=0.207 Sum_probs=103.5
Q ss_pred cCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcC
Q 005508 446 LTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKAS 525 (693)
Q Consensus 446 l~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~ 525 (693)
+.+|....+.+..|++.+..|+.+| |... ..=+..+.+.|+++|.++.....|--.+.+-.+.+.+|++.++
T Consensus 200 ~~~P~i~ked~~~i~~~~~~~lv~k---GV~~-----~~D~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~ 271 (360)
T COG1304 200 LSVPVISKEDGAGISKEWAGPLVLK---GILA-----PEDAAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVG 271 (360)
T ss_pred cCCCcccHHHHhHHHHhcCCcHHHh---CCCC-----HHHHHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhC
Confidence 3567777777777777777777764 2221 1113456778999999964333444456677788999999997
Q ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcCCchh
Q 005508 526 DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKG 605 (693)
Q Consensus 526 ~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gsd~~g 605 (693)
..++||+.|||.+..|+.++|. -|||+|+|||..|.-- ...++. --.+-++++++-++..+---|. +-
T Consensus 272 ~~~~vi~dGGiR~G~Dv~KAlA--LGA~~v~igrp~L~~l-----~~~g~~---GV~~~le~~~~El~~~M~L~G~--~~ 339 (360)
T COG1304 272 DRIEVIADGGIRSGLDVAKALA--LGADAVGIGRPFLYGL-----AAGGEA---GVERVLEIIRKELKIAMALTGA--KN 339 (360)
T ss_pred CCeEEEecCCCCCHHHHHHHHH--hCCchhhhhHHHHHHH-----HhccHH---HHHHHHHHHHHHHHHHHHhcCC--Cc
Confidence 5699999999999999999998 5999999999887432 111111 0235678888888888777775 45
Q ss_pred HHHHHHH
Q 005508 606 VETTRHF 612 (693)
Q Consensus 606 v~~~Rrf 612 (693)
|..+++.
T Consensus 340 i~el~~~ 346 (360)
T COG1304 340 IEELKRV 346 (360)
T ss_pred HHHhccC
Confidence 6666553
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00047 Score=77.10 Aligned_cols=212 Identities=10% Similarity=0.005 Sum_probs=107.7
Q ss_pred ccccCcEEEccCC-CCCcHHHHHHHHHcC-CCEEEecccccchhccCChhhhhhhhcc-CCCCeEEEEecCC--CHHHHH
Q 005508 336 IDFREKLYLAPLT-TVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWALLRRH-SSEDLFGVQICGA--YPDTLA 410 (693)
Q Consensus 336 l~lknriiLAPMt-~v~dlpFRrl~~~~G-adl~~TEM~~a~~ll~g~~~e~~ll~~h-~~e~p~gvQL~G~--~pe~~~ 410 (693)
+.++-+|+.|||. ++++..+-.-+.+.| .+++=+-......+ + ....-++.. ..+.||+|.|+.+ ++....
T Consensus 10 lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l-~---~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~ 85 (418)
T cd04742 10 YGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEV-E---QAIERIQAALGNGEPYGVNLIHSPDEPELEE 85 (418)
T ss_pred hCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHH-H---HHHHHHHHhccCCCCeEEeeecCCCCchhHH
Confidence 4557789999999 799877655444443 44332222211111 1 111122221 2268999999863 333334
Q ss_pred HHHHHHhhhCCCcEEEEcC-CCCCcc-cccCCccccccCChHHHHHHHHHhccccccCEEEEec-CCCCC--ChhHHHHH
Q 005508 411 RTVELIDQQCTVDFIDINM-GCPIDI-VVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR-TGYFE--GKNRIDSL 485 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~-GCP~~~-v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR-~G~~d--~~~~~~~l 485 (693)
...+++. +.|+..|+... +-|.+. +.-+..|... +... .+ .....|..|+. .-.-. -.+-..++
T Consensus 86 ~~v~l~l-e~gV~~ve~sa~~~~~p~~~~~r~~G~~~--~~~g--~~------~~~~~ViakVsr~evAs~~f~ppp~~~ 154 (418)
T cd04742 86 GLVDLFL-RHGVRVVEASAFMQLTPALVRYRAKGLRR--DADG--RV------QIANRIIAKVSRPEVAEAFMSPAPERI 154 (418)
T ss_pred HHHHHHH-HcCCCEEEeccccCCCcchhhHHhcCCcc--cccc--cc------cccceEEEecCChhhhhhhcCCCCHHH
Confidence 4455555 56898888752 111111 1000000000 0000 00 00123444431 10000 00001233
Q ss_pred HH--------------HHHHcC-CCEEEEecccccCccCCC-cc---HHHHHHHHHHc------CCCceEEEeCCCCCHH
Q 005508 486 IA--------------DIGTWG-ASAVTVHGRTRQQRYSKL-AD---WDYIYQCARKA------SDDLQVLGNGDIYSYL 540 (693)
Q Consensus 486 a~--------------~L~eaG-~daItVHgRtr~q~ytg~-Ad---w~~I~~i~~~~------~~~IPVIgNGdI~s~e 540 (693)
++ .+++.| +|.|++. .-.+++++. .. +..|.++++.+ ..+||||+.|||.|++
T Consensus 155 v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq--~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~ 232 (418)
T cd04742 155 LKKLLAEGKITEEQAELARRVPVADDITVE--ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPE 232 (418)
T ss_pred HHHHHHcCCCCHHHHHHHHhCCCCCEEEEc--ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHH
Confidence 34 444555 6999996 223333322 12 33444444433 1149999999999999
Q ss_pred HHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 541 DWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 541 Da~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
++..++. -|||+|++|...+.-+.
T Consensus 233 ~vaAA~a--lGAd~V~~GT~flat~E 256 (418)
T cd04742 233 AAAAAFA--LGADFIVTGSINQCTVE 256 (418)
T ss_pred HHHHHHH--cCCcEEeeccHHHhCcc
Confidence 9999987 59999999999987553
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0005 Score=70.67 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=109.5
Q ss_pred cCcEEE--ccCCCCCcHH-HHHHHHHcCCCEEEecccccc---hhccCChhhhhhhhccCCCCeEEEEecC--------C
Q 005508 339 REKLYL--APLTTVGNLP-FRRVCKVLGADVTCGEMAMCT---NLLQGQASEWALLRRHSSEDLFGVQICG--------A 404 (693)
Q Consensus 339 knriiL--APMt~v~dlp-FRrl~~~~Gadl~~TEM~~a~---~ll~g~~~e~~ll~~h~~e~p~gvQL~G--------~ 404 (693)
.+-+.+ .|+.|..+.. .-+.+.++|++-++.-..+.. ..+.+ ..++++.+.+ .
T Consensus 7 Dh~~~~~~~p~~~~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~i~~p~~ 73 (235)
T cd00958 7 DHGIEHGFGPNPGLEDPEETVKLAAEGGADAVALTKGIARAYGREYAG-------------DIPLIVKLNGSTSLSPKDD 73 (235)
T ss_pred CCcccccCCCCccccCHHHHHHHHHhcCCCEEEeChHHHHhcccccCC-------------CCcEEEEECCCCCCCCCCC
Confidence 344555 8998877753 333344678876643321111 11111 1123333321 2
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEE--cCCCCCcccccCCccccccCChHHHHHHHHHhcc---ccccCEEEEecC-CCC--
Q 005508 405 YPDTLARTVELIDQQCTVDFIDI--NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG---TVDKPITIKVRT-GYF-- 476 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDL--N~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~---~v~iPVtVKiR~-G~~-- 476 (693)
+...+...++.+. ..|+|+|++ |.|- + ..+.+.+.++.+++ ..++|+.|=... |..
T Consensus 74 ~~~~~~~~v~~a~-~~Ga~~v~~~~~~~~-------------~--~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~ 137 (235)
T cd00958 74 NDKVLVASVEDAV-RLGADAVGVTVYVGS-------------E--EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVK 137 (235)
T ss_pred CchhhhcCHHHHH-HCCCCEEEEEEecCC-------------c--hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCccc
Confidence 2334434344444 479999955 4330 0 12233333333333 247888874433 110
Q ss_pred --CChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCC--CCHHH----HHHHHhc
Q 005508 477 --EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDI--YSYLD----WNKHKSD 548 (693)
Q Consensus 477 --d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI--~s~eD----a~~~l~~ 548 (693)
....+....++...+.|+|.|-+. |+ .+++.++++++.. ++||++.|+| .|.++ +.++++
T Consensus 138 ~~~~~~~i~~~~~~a~~~GaD~Ik~~-------~~--~~~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~- 205 (235)
T cd00958 138 NEKDPDLIAYAARIGAELGADIVKTK-------YT--GDAESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAME- 205 (235)
T ss_pred CccCHHHHHHHHHHHHHHCCCEEEec-------CC--CCHHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHH-
Confidence 012333444677889999999884 22 2788899999887 6999998987 67766 555554
Q ss_pred CCCcCEEEEcHHHhhCCCchhHH
Q 005508 549 CPELASCMIARGALIKPWIFTEI 571 (693)
Q Consensus 549 ~~gaDgVMIGRgaL~nPwiF~eI 571 (693)
.||+||.+||.++..|+....+
T Consensus 206 -~Ga~gv~vg~~i~~~~dp~~~~ 227 (235)
T cd00958 206 -AGAAGVAVGRNIFQRPDPVAML 227 (235)
T ss_pred -cCCcEEEechhhhcCCCHHHHH
Confidence 6999999999999888654443
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.7e-05 Score=78.68 Aligned_cols=99 Identities=12% Similarity=0.154 Sum_probs=79.0
Q ss_pred EEEecCCCCCChh---HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 468 TIKVRTGYFEGKN---RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 468 tVKiR~G~~d~~~---~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
.|+..-||.+... +..++++.+.+. ++.|++-.+.... ...+.+++.++++.+.+ .+||++.|||.|.+|+.+
T Consensus 15 vVr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~ivDldga~-~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~ 90 (228)
T PRK04128 15 AVRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHVVDLDGAF-EGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKD 90 (228)
T ss_pred EEEEEeccccCceECCCHHHHHHHHHHh-CCEEEEEECcchh-cCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHH
Confidence 3445556654322 678999999998 9999996654221 12236899999999987 699999999999999999
Q ss_pred HHhcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 545 HKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
++. .|+|+|.||+.++ ||.+++++.+
T Consensus 91 l~~--~G~~~vivGtaa~-~~~~l~~~~~ 116 (228)
T PRK04128 91 AYE--IGVENVIIGTKAF-DLEFLEKVTS 116 (228)
T ss_pred HHH--CCCCEEEECchhc-CHHHHHHHHH
Confidence 876 5999999999999 9999999865
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=75.07 Aligned_cols=107 Identities=12% Similarity=0.157 Sum_probs=78.9
Q ss_pred cccccCChHHHHHHHHHhccccccCEEEE----ecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHH
Q 005508 442 GSCLLTKPMRMKGIIEATSGTVDKPITIK----VRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI 517 (693)
Q Consensus 442 GsaLl~rp~~l~eIV~av~~~v~iPVtVK----iR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I 517 (693)
|+..+++|+++.++.. .+ -|-+| ...||.+ ...+++..+...|+ .+.+..-.+.+...+ .|++.+
T Consensus 108 gT~a~~~p~~l~~~~~----vv--slD~~~g~v~~~g~~~---~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G-~d~eli 176 (221)
T TIGR00734 108 ATETLDITELLRECYT----VV--SLDFKEKFLDASGLFE---SLEEVRDFLNSFDY-GLIVLDIHSVGTMKG-PNLELL 176 (221)
T ss_pred cChhhCCHHHHHHhhh----EE--EEEeECCccccccccc---cHHHHHHHHHhcCC-EEEEEECCccccCCC-CCHHHH
Confidence 5667789999888751 11 11222 1136653 45667778888998 676765555555444 689999
Q ss_pred HHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 518 YQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 518 ~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
+++++.+ ++|||+.|||.|.+|+.++.. .|||+|++|++++.
T Consensus 177 ~~i~~~~--~~pvia~GGi~s~ed~~~l~~--~Ga~~vivgsal~~ 218 (221)
T TIGR00734 177 TKTLELS--EHPVMLGGGISGVEDLELLKE--MGVSAVLVATAVHK 218 (221)
T ss_pred HHHHhhC--CCCEEEeCCCCCHHHHHHHHH--CCCCEEEEhHHhhC
Confidence 9999987 799999999999999998554 69999999999864
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.2e-07 Score=96.97 Aligned_cols=220 Identities=16% Similarity=0.129 Sum_probs=154.7
Q ss_pred ccccCC-ccccCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCH--
Q 005508 330 SREKKL-IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYP-- 406 (693)
Q Consensus 330 p~ek~~-l~lknriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~p-- 406 (693)
+.++.. -++++...++||..+.-.-|++. .+++.|+.+.++......+.-.+ ...-.|-+.-.-|..+
T Consensus 191 ~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~-~e~y~Di~~~~~~~~~~~vmiAR--------~A~~n~SiF~~eG~~~~~ 261 (477)
T KOG2334|consen 191 NQEPATKDYIREIAQACQMVPVIVNGGSMD-IEQYSDIEDFQEKTGADSVMIAR--------AAESNPSIFREEGCLSEK 261 (477)
T ss_pred CCCCCCHHHHHHHHHHhccceEeeccchhh-HHhhhhHHHHHHHhccchhhhhH--------hhhcCCceeeecCCchHH
Confidence 334433 35688888999999988888888 67888988777665443221111 0000010111112111
Q ss_pred ---HHHHHHHHHHhhhCC-------CcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCC
Q 005508 407 ---DTLARTVELIDQQCT-------VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF 476 (693)
Q Consensus 407 ---e~~~~AA~~~~~~aG-------~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~ 476 (693)
..|.+.|.......| .-.+++|+|||..+....+.+.+++..+-.+..+.+..++.++.|+ .|.|+-.+
T Consensus 262 ~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~ 340 (477)
T KOG2334|consen 262 EVIREFLRLAVQYDNHYGNTKYCLQRILRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVS 340 (477)
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHhhhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeC
Confidence 122222221111111 1246889999999999999999999999999999999999999998 89998543
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 477 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 477 d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
..++..+++.|++.+ ++.+|+|..-.+.+-++.|+-++.+.... .++++.||+++...+- .. .++.+||
T Consensus 341 --~~d~~~~~~~le~~~--~l~i~~r~~f~r~~~pa~~~~~k~~l~~~--~~~~~~~~~~ye~~~~---~d--~lf~si~ 409 (477)
T KOG2334|consen 341 --PADTVNLAERLEDLS--ALAIHGRKIFDRPTDPAKWDTPKMVLADL--CVKTKANGPVYETVQR---TD--KLFSSIA 409 (477)
T ss_pred --cchhhhHhhhHHhcc--chhhhhcccccccCCCcCCCCHHHHHHHh--hhhhcCCCcchhhhhh---hh--hhhHHHh
Confidence 356788999999988 77789887666667789999999888877 6999999999988875 22 4678899
Q ss_pred EcHHHhhCCCchhH
Q 005508 557 IARGALIKPWIFTE 570 (693)
Q Consensus 557 IGRgaL~nPwiF~e 570 (693)
.+||...+-.||..
T Consensus 410 ~~~~~~~~ssi~~~ 423 (477)
T KOG2334|consen 410 TARGQKYNSSIWSP 423 (477)
T ss_pred hhhhhhhhccccCc
Confidence 99999988777755
|
|
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00073 Score=71.90 Aligned_cols=239 Identities=14% Similarity=0.115 Sum_probs=150.5
Q ss_pred CccccCcEEEccCCC------CCcHHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCC-CHH
Q 005508 335 LIDFREKLYLAPLTT------VGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA-YPD 407 (693)
Q Consensus 335 ~l~lknriiLAPMt~------v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~-~pe 407 (693)
+-.+.-+|++||-+- -|.+.--+.|...|.-+++|-++++.. .+ +....+.+ .--.||.-. +-+
T Consensus 64 G~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~------Ed--I~~aap~~-~rwfQLYvykdr~ 134 (363)
T KOG0538|consen 64 GQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSV------ED--IASAAPPG-IRWFQLYVYKDRD 134 (363)
T ss_pred cccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCH------HH--HHhhCCCC-cEEEEEEecCchH
Confidence 334556889998532 245666677777777777777665432 11 11222222 334688754 344
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCCC----------------CCcccc-----------cCCcccccc------CChHHHHH
Q 005508 408 TLARTVELIDQQCTVDFIDINMGC----------------PIDIVV-----------NKGAGSCLL------TKPMRMKG 454 (693)
Q Consensus 408 ~~~~AA~~~~~~aG~D~IDLN~GC----------------P~~~v~-----------k~G~GsaLl------~rp~~l~e 454 (693)
.-.+..++++ .+||.+|=|-.-- |..... ..+..|++. -+|.+-=+
T Consensus 135 It~~Lv~raE-k~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~ 213 (363)
T KOG0538|consen 135 ITEQLVKRAE-KAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWK 213 (363)
T ss_pred HHHHHHHHHH-HcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChh
Confidence 4455566666 6799887764322 221000 000111111 13444444
Q ss_pred HHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeC
Q 005508 455 IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 534 (693)
Q Consensus 455 IV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG 534 (693)
=++.++..+..||.||==+.. + =|....++|++.|.|+.--..|.-..+|-.+.+.++.+++.++|||+.-|
T Consensus 214 Di~wLr~~T~LPIvvKGilt~----e----DA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDG 285 (363)
T KOG0538|consen 214 DIKWLRSITKLPIVVKGVLTG----E----DARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDG 285 (363)
T ss_pred hhHHHHhcCcCCeEEEeeccc----H----HHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEec
Confidence 566777778899999844321 2 24556789999999954333344446799999999999998889999999
Q ss_pred CCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 005508 535 DIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601 (693)
Q Consensus 535 dI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gs 601 (693)
||.+..|+.++|. -||.+|.|||..+.-- .-++.. --++-+++|+.-+...+..-|.
T Consensus 286 GVR~G~DVlKALA--LGAk~VfiGRP~v~gL-----A~~Ge~---GV~~vl~iL~~efe~tmaLsGc 342 (363)
T KOG0538|consen 286 GVRRGTDVLKALA--LGAKGVFIGRPIVWGL-----AAKGEA---GVKKVLDILRDEFELTMALSGC 342 (363)
T ss_pred CcccchHHHHHHh--cccceEEecCchheee-----ccccch---hHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999997 5999999999876432 222221 2456788888877777665553
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.7e-05 Score=82.05 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=71.7
Q ss_pred CChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCcc--------CCCccHHHH
Q 005508 447 TKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRY--------SKLADWDYI 517 (693)
Q Consensus 447 ~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~y--------tg~Adw~~I 517 (693)
..++-+.+.|..+|+.. ++||+||+-.+.. ...++..+.++|+|.|||.|.....+. .|.+-...+
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~-----~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l 259 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRG-----VEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYAL 259 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT-----HHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCc-----HHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHH
Confidence 35678899999999988 8999999987642 122333378899999999987533222 121111223
Q ss_pred HHHHHHc-----CCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC
Q 005508 518 YQCARKA-----SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 564 (693)
Q Consensus 518 ~~i~~~~-----~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 564 (693)
.++.+.+ .+.|.||+.|+|.++.|+.+++. -|||+|.|||++|.-
T Consensus 260 ~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kala--LGAD~v~igt~~liA 309 (368)
T PF01645_consen 260 ARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALA--LGADAVYIGTAALIA 309 (368)
T ss_dssp HHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHH--CT-SEEE-SHHHHHH
T ss_pred HHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHh--cCCCeeEecchhhhh
Confidence 4444332 24699999999999999999987 599999999999853
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.8e-05 Score=77.08 Aligned_cols=87 Identities=14% Similarity=0.035 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+..++|+.+.+.|++.|+|-.-.... ....+.+.|+++.+.+ .+||..-|||.|.+|+++++. .||+-|.+|..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~--~Ga~kvviGs~ 106 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF--GRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALA--TGCARVNIGTA 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC--CCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHH--CCCCEEEECch
Confidence 57889999999999999998765443 3456889999999998 699999999999999999887 59999999999
Q ss_pred HhhCCCchhHHHh
Q 005508 561 ALIKPWIFTEIKE 573 (693)
Q Consensus 561 aL~nPwiF~eIke 573 (693)
++.||.++.++.+
T Consensus 107 ~l~~p~l~~~i~~ 119 (241)
T PRK14024 107 ALENPEWCARVIA 119 (241)
T ss_pred HhCCHHHHHHHHH
Confidence 9999999999875
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00037 Score=69.64 Aligned_cols=154 Identities=13% Similarity=0.083 Sum_probs=93.6
Q ss_pred EEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcC-CCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCC
Q 005508 397 FGVQICGAYPDTLARTVELIDQQCTVDFIDINM-GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY 475 (693)
Q Consensus 397 ~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~-GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~ 475 (693)
+.+.|..-++..+.++++.+. ..|+|.|.|-+ ..+.. .+..+-.++++.+++.++.|+.|.+-..
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~-~~G~~~i~l~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~v~l~~~- 67 (211)
T cd00429 2 IAPSILSADFANLGEELKRLE-EAGADWIHIDVMDGHFV------------PNLTFGPPVVKALRKHTDLPLDVHLMVE- 67 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHH-HcCCCEEEEecccCCCC------------CccccCHHHHHHHHhhCCCcEEEEeeeC-
Confidence 456788889999999999887 67999999842 11110 0111112445555544345554433331
Q ss_pred CCChhHHHHHHHHHHHcCCCEEEEecccc--------------------------cC---------cc----------CC
Q 005508 476 FEGKNRIDSLIADIGTWGASAVTVHGRTR--------------------------QQ---------RY----------SK 510 (693)
Q Consensus 476 ~d~~~~~~~la~~L~eaG~daItVHgRtr--------------------------~q---------~y----------tg 510 (693)
+..++++.+.++|++.|+||+... .+ .| ++
T Consensus 68 -----d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg 142 (211)
T cd00429 68 -----NPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGG 142 (211)
T ss_pred -----CHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCC
Confidence 123456666678888888776420 00 00 11
Q ss_pred -CccH---HHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHH
Q 005508 511 -LADW---DYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 511 -~Adw---~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIk 572 (693)
..+| +.+.++++..+ .++||+.-|||.. +.+.+++. .|+|+|.+||++...+.....++
T Consensus 143 ~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~--~gad~iivgsai~~~~~~~~~~~ 208 (211)
T cd00429 143 QKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAE--AGADVLVAGSALFGSDDYAEAIK 208 (211)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHH--cCCCEEEECHHHhCCCCHHHHHH
Confidence 1223 34445554441 0389999999974 99988776 68999999999998877655544
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00042 Score=69.76 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=59.1
Q ss_pred HHHHHHHcCCCEEEEecccc---cCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHH
Q 005508 485 LIADIGTWGASAVTVHGRTR---QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 485 la~~L~eaG~daItVHgRtr---~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 561 (693)
-+..+.+.|+|+|.++.... .+.+ .+..|++++++++.+ ++||++.||| +++++.+++. .|+|+|++||++
T Consensus 107 ~a~~a~~~Gadyi~~g~v~~t~~k~~~-~~~g~~~l~~~~~~~--~ipvia~GGI-~~~~~~~~~~--~Ga~gvav~s~i 180 (201)
T PRK07695 107 EAIQAEKNGADYVVYGHVFPTDCKKGV-PARGLEELSDIARAL--SIPVIAIGGI-TPENTRDVLA--AGVSGIAVMSGI 180 (201)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCCCC-CCCCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHH--cCCCEEEEEHHH
Confidence 35677889999997643221 1222 235799999999887 6999999999 9999999876 689999999999
Q ss_pred hhCCC
Q 005508 562 LIKPW 566 (693)
Q Consensus 562 L~nPw 566 (693)
...+.
T Consensus 181 ~~~~~ 185 (201)
T PRK07695 181 FSSAN 185 (201)
T ss_pred hcCCC
Confidence 85443
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00054 Score=71.90 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCC------cccccc--CChHHHHHHHHHhccccccCEEEEecCCCC
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG------AGSCLL--TKPMRMKGIIEATSGTVDKPITIKVRTGYF 476 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G------~GsaLl--~rp~~l~eIV~av~~~v~iPVtVKiR~G~~ 476 (693)
+.+...+.++.+. +.|+|.||| |=|.+.-.-|| .--+|- -+.+.+.++++.+++..++|+.+ +++.
T Consensus 14 ~~e~~~~~~~~l~-~~Gad~iEl--GiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~il---m~Y~ 87 (250)
T PLN02591 14 DLDTTAEALRLLD-ACGADVIEL--GVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVL---FTYY 87 (250)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEE--CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE---Eecc
Confidence 5678888888877 579999999 55654322222 111222 14567888999998777889754 3332
Q ss_pred CC--hhHHHHHHHHHHHcCCCEEEEec--------------------------cccc----------Cc--c-------C
Q 005508 477 EG--KNRIDSLIADIGTWGASAVTVHG--------------------------RTRQ----------QR--Y-------S 509 (693)
Q Consensus 477 d~--~~~~~~la~~L~eaG~daItVHg--------------------------Rtr~----------q~--y-------t 509 (693)
.. .--..+|++.+.++|+++|.|.. -|.. .. | |
T Consensus 88 N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvT 167 (250)
T PLN02591 88 NPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVT 167 (250)
T ss_pred cHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCc
Confidence 21 11234566666666666665521 1100 00 1 2
Q ss_pred CC-----cc-HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 510 KL-----AD-WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 510 g~-----Ad-w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
|. .+ -++++++++.. ++||+..-||.+++++.+++. .|||||.||.+++
T Consensus 168 G~~~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~--~GADGvIVGSalV 222 (250)
T PLN02591 168 GARASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQIAG--WGADGVIVGSAMV 222 (250)
T ss_pred CCCcCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHh--cCCCEEEECHHHH
Confidence 21 22 35688888865 799999999999999999765 5899999999986
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0016 Score=65.50 Aligned_cols=182 Identities=9% Similarity=0.007 Sum_probs=111.3
Q ss_pred HHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcc
Q 005508 356 RRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI 435 (693)
Q Consensus 356 Rrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~ 435 (693)
.+++...+.++.+-|..+.-. ..........++.+-.+..+++-+.-.+|..+ .++.+. ++|+|+|=+|+-+|.
T Consensus 15 ~~~~~~l~~~v~~iev~~~l~-~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~--~~~~~~-~~Gad~i~vh~~~~~-- 88 (206)
T TIGR03128 15 LELAEKVADYVDIIEIGTPLI-KNEGIEAVKEMKEAFPDRKVLADLKTMDAGEY--EAEQAF-AAGADIVTVLGVADD-- 88 (206)
T ss_pred HHHHHHcccCeeEEEeCCHHH-HHhCHHHHHHHHHHCCCCEEEEEEeeccchHH--HHHHHH-HcCCCEEEEeccCCH--
Confidence 345555554555556531111 11222333334333224456665533355543 234444 579999999865431
Q ss_pred cccCCccccccCChHHHHHHHHHhccccccCEEEEe-cCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccH
Q 005508 436 VVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV-RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW 514 (693)
Q Consensus 436 v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi-R~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw 514 (693)
..+.++++.+++ .++++.+-+ .. .+..+-+..+.+.|++.|.++.....+.+. +..+
T Consensus 89 --------------~~~~~~i~~~~~-~g~~~~~~~~~~------~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~-~~~~ 146 (206)
T TIGR03128 89 --------------ATIKGAVKAAKK-HGKEVQVDLINV------KDKVKRAKELKELGADYIGVHTGLDEQAKG-QNPF 146 (206)
T ss_pred --------------HHHHHHHHHHHH-cCCEEEEEecCC------CChHHHHHHHHHcCCCEEEEcCCcCcccCC-CCCH
Confidence 334566666655 478887753 32 123445556677899999998655444443 3557
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchh
Q 005508 515 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 569 (693)
Q Consensus 515 ~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~ 569 (693)
+.+.++++..+ .++|..-||| +.+.+.++++ .|||+|.+||+++..+..-.
T Consensus 147 ~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~~--~Ga~~v~vGsai~~~~d~~~ 197 (206)
T TIGR03128 147 EDLQTILKLVK-EARVAVAGGI-NLDTIPDVIK--LGPDIVIVGGAITKAADPAE 197 (206)
T ss_pred HHHHHHHHhcC-CCcEEEECCc-CHHHHHHHHH--cCCCEEEEeehhcCCCCHHH
Confidence 88899888875 4666669999 8899988876 69999999999887665433
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=8e-05 Score=76.38 Aligned_cols=89 Identities=18% Similarity=0.106 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+.+++|++..+.|+|-|++-.-|....- ...++++|+++++.+ -||+...|||.|.+|+.++|. .|||=|.|..+
T Consensus 31 DpVelA~~Y~e~GADElvFlDItAs~~g-r~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~--aGADKVSINsa 105 (256)
T COG0107 31 DPVELAKRYNEEGADELVFLDITASSEG-RETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLR--AGADKVSINSA 105 (256)
T ss_pred ChHHHHHHHHHcCCCeEEEEeccccccc-chhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHH--cCCCeeeeChh
Confidence 5789999999999999998766533221 346789999999999 799999999999999999887 69999999999
Q ss_pred HhhCCCchhHHHhc
Q 005508 561 ALIKPWIFTEIKEQ 574 (693)
Q Consensus 561 aL~nPwiF~eIke~ 574 (693)
|+.||.+.+++.+.
T Consensus 106 Av~~p~lI~~~a~~ 119 (256)
T COG0107 106 AVKDPELITEAADR 119 (256)
T ss_pred HhcChHHHHHHHHH
Confidence 99999999998763
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00016 Score=74.08 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+..++|+.+.+.|++.|+|......-. ....+++.|+++.+.+ .+||...|+|.+.+|+++++. .|||.|++|..
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~-g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~--~Ga~~vvlgs~ 103 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKE-GGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLD--LGVDRVIIGTA 103 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc-CCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHH--cCCCEEEEChH
Confidence 578999999999999999975543211 2335889999999988 699999999999999999887 69999999999
Q ss_pred HhhCCCchhHHHhc
Q 005508 561 ALIKPWIFTEIKEQ 574 (693)
Q Consensus 561 aL~nPwiF~eIke~ 574 (693)
++.+|.++.++.+.
T Consensus 104 ~l~d~~~~~~~~~~ 117 (230)
T TIGR00007 104 AVENPDLVKELLKE 117 (230)
T ss_pred HhhCHHHHHHHHHH
Confidence 99999999888764
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=76.59 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
.+..++|+.+.+.|++.|++..=.+...- ...+.+.++++.+.+ .+||++.|||.+.+|+.+++. .|++.|.||+
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~-~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~--~G~~~vvigs 104 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRG-SEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFS--LGVEKVSINT 104 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCC-CcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHH--CCCCEEEECh
Confidence 36889999999999999999765544332 236899999999987 699999999999999999885 5999999999
Q ss_pred HHhhCCCchhHHHh
Q 005508 560 GALIKPWIFTEIKE 573 (693)
Q Consensus 560 gaL~nPwiF~eIke 573 (693)
+++.+|.++.++.+
T Consensus 105 ~~~~~~~~~~~~~~ 118 (258)
T PRK01033 105 AALEDPDLITEAAE 118 (258)
T ss_pred HHhcCHHHHHHHHH
Confidence 99999999999865
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00067 Score=70.19 Aligned_cols=135 Identities=13% Similarity=0.210 Sum_probs=95.6
Q ss_pred EEEEecCC--CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC-
Q 005508 397 FGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT- 473 (693)
Q Consensus 397 ~gvQL~G~--~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~- 473 (693)
+-+|+.|. +.+++.+ ++ ..|++.|=| |++.. +|+++.++.+..-+ +-|++-.|-
T Consensus 74 ~pv~~gGGIrs~edv~~---l~--~~G~~~viv--------------Gtaa~-~~~~l~~~~~~~g~---ivvslD~~~g 130 (228)
T PRK04128 74 LKVQVGGGLRTYESIKD---AY--EIGVENVII--------------GTKAF-DLEFLEKVTSEFEG---ITVSLDVKGG 130 (228)
T ss_pred CCEEEcCCCCCHHHHHH---HH--HCCCCEEEE--------------Cchhc-CHHHHHHHHHHcCC---EEEEEEccCC
Confidence 34677663 4555543 33 358888755 35566 89999999887632 334443333
Q ss_pred -----CCCC-ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh
Q 005508 474 -----GYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 547 (693)
Q Consensus 474 -----G~~d-~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~ 547 (693)
||.+ ......++++++++. +..|.+..-.+.+...|+- ++.+..+ ++|||++|||.|.+|+.++..
T Consensus 131 ~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d------~l~~~~~-~~pviasGGv~~~~Dl~~l~~ 202 (228)
T PRK04128 131 RIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE------EIERFWG-DEEFIYAGGVSSAEDVKKLAE 202 (228)
T ss_pred eEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHH------HHHHhcC-CCCEEEECCCCCHHHHHHHHH
Confidence 4543 334567899999988 9999999888888877743 3333333 699999999999999999765
Q ss_pred cCCCcCEEEEcHHHhhC
Q 005508 548 DCPELASCMIARGALIK 564 (693)
Q Consensus 548 ~~~gaDgVMIGRgaL~n 564 (693)
.|++||++|++++..
T Consensus 203 --~g~~gvivg~al~~g 217 (228)
T PRK04128 203 --IGFSGVIIGKALYEG 217 (228)
T ss_pred --CCCCEEEEEhhhhcC
Confidence 699999999998654
|
|
| >COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.3e-05 Score=84.40 Aligned_cols=61 Identities=36% Similarity=0.842 Sum_probs=50.9
Q ss_pred cCChhhhccCCCCCCCC---CCCCCCC---CChhhhhhcCCCC--CCCCCCCcCcccccCCCCCcccccCcc
Q 005508 102 HLCPEVAKSGDVSSCPY---KDKCRFS---HDLDGFKAQKPDD--LEGECPFLSSEGPCPYGLACRFSGTHR 165 (693)
Q Consensus 102 ~LC~~~~~~~~~~~C~~---Gd~Crf~---Hd~~~yl~~K~~d--i~~~Cp~f~~~G~Cp~G~~CRF~~sH~ 165 (693)
.||.+|...| .|+| |++|.|+ |.+.+.-..|... -+..|-.|+..||||||.+|.|..+-.
T Consensus 231 ~lc~~ft~kg---~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~ 299 (351)
T COG5063 231 ELCESFTRKG---TCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDD 299 (351)
T ss_pred HHhhccCcCC---CCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCCh
Confidence 8999999987 8999 9999999 9988764433222 267999999999999999999986654
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0014 Score=68.85 Aligned_cols=189 Identities=14% Similarity=0.058 Sum_probs=116.2
Q ss_pred HcCCCEEEecccccchhccCChh-hhhh-------hhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 005508 361 VLGADVTCGEMAMCTNLLQGQAS-EWAL-------LRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCP 432 (693)
Q Consensus 361 ~~Gadl~~TEM~~a~~ll~g~~~-e~~l-------l~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP 432 (693)
+.|+|-++-|-....|+...-.. +.+. ++.. -.-|+|||+.-+++......|. .+|+|||-+|.-|=
T Consensus 40 ~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~-~~~p~GVnvL~nd~~aalaiA~----A~ga~FIRv~~~~g 114 (254)
T PF03437_consen 40 EGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRRE-VSVPVGVNVLRNDPKAALAIAA----ATGADFIRVNVFVG 114 (254)
T ss_pred HCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHh-CCCCEEeeeecCCCHHHHHHHH----HhCCCEEEecCEEc
Confidence 36999888888777776554321 2221 1222 3579999999988765433332 35899999996553
Q ss_pred CcccccCCccccccCChHHHHHHHHHhccccccCEEEEec--CCCCCChhHHHHHH-HHHHHcCCCEEEEecccccCccC
Q 005508 433 IDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR--TGYFEGKNRIDSLI-ADIGTWGASAVTVHGRTRQQRYS 509 (693)
Q Consensus 433 ~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR--~G~~d~~~~~~~la-~~L~eaG~daItVHgRtr~q~yt 509 (693)
.. +...| .+..+...+.+.-+.+... +.|..-+. -+..-......+.+ ..++..++|+|.|.|... .
T Consensus 115 ~~-~~d~G---~~~~~a~e~~r~R~~l~a~--v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T----G 184 (254)
T PF03437_consen 115 AY-VTDEG---IIEGCAGELLRYRKRLGAD--VKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKAT----G 184 (254)
T ss_pred ee-cccCc---cccccHHHHHHHHHHcCCC--eEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCccc----C
Confidence 22 11112 2333444444444444333 33322222 11111111233334 444788999999998642 2
Q ss_pred CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhH
Q 005508 510 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 570 (693)
Q Consensus 510 g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~e 570 (693)
.+++.+.+.++++.+ ++||+.++|+ +++-+.++|. -|||+.||..+-.+=.+.+.
T Consensus 185 ~~~~~~~l~~vr~~~--~~PVlvGSGv-t~~Ni~~~l~---~ADG~IVGS~~K~~G~~~n~ 239 (254)
T PF03437_consen 185 EPPDPEKLKRVREAV--PVPVLVGSGV-TPENIAEYLS---YADGAIVGSYFKKDGKWENP 239 (254)
T ss_pred CCCCHHHHHHHHhcC--CCCEEEecCC-CHHHHHHHHH---hCCEEEEeeeeeeCCEeCCc
Confidence 457889999999998 4999999999 7888988875 38999999876555444443
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0071 Score=62.68 Aligned_cols=207 Identities=14% Similarity=0.113 Sum_probs=118.4
Q ss_pred cCCccccCcEEEccCCCCC-cHHHHHHHHHcCCCEEEecccccchhc-cCChhhhhhhhccCCCCeEEEEecC-CCHHHH
Q 005508 333 KKLIDFREKLYLAPLTTVG-NLPFRRVCKVLGADVTCGEMAMCTNLL-QGQASEWALLRRHSSEDLFGVQICG-AYPDTL 409 (693)
Q Consensus 333 k~~l~lknriiLAPMt~v~-dlpFRrl~~~~Gadl~~TEM~~a~~ll-~g~~~e~~ll~~h~~e~p~gvQL~G-~~pe~~ 409 (693)
+.+.+|+.|++|-- ..|. ..-.+.....-|++++..-+=-...-. .+...-|.+++. .+-.+...-.| .+.++.
T Consensus 2 i~g~~f~SRL~lGT-gky~s~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~--~~~~lLPNTaGc~tA~EA 78 (247)
T PF05690_consen 2 IGGKEFRSRLILGT-GKYPSPEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDR--SGYTLLPNTAGCRTAEEA 78 (247)
T ss_dssp ETTEEES-SEEEE--STSSSHHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTC--CTSEEEEE-TT-SSHHHH
T ss_pred cCCEEeecceEEec-CCCCCHHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcc--cCCEECCcCCCCCCHHHH
Confidence 56778999998842 3343 345555666679997732221111111 012233444422 33344555555 478999
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHH
Q 005508 410 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADI 489 (693)
Q Consensus 410 ~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L 489 (693)
++.|+++.+-.|-++|-|-. ..+ --.|+-|+-.+.+-.+.+.+. ++-|.--+.. + .-++++|
T Consensus 79 v~~A~laRe~~~t~wIKLEV-------i~D--~~~L~PD~~etl~Aae~Lv~e-GF~VlPY~~~----D----~v~akrL 140 (247)
T PF05690_consen 79 VRTARLAREAFGTNWIKLEV-------IGD--DKTLLPDPIETLKAAEILVKE-GFVVLPYCTD----D----PVLAKRL 140 (247)
T ss_dssp HHHHHHHHHTTS-SEEEE---------BS---TTT--B-HHHHHHHHHHHHHT-T-EEEEEE-S---------HHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEE-------eCC--CCCcCCChhHHHHHHHHHHHC-CCEEeecCCC----C----HHHHHHH
Confidence 99999998656788887752 212 124666665554444443321 3333333322 1 5689999
Q ss_pred HHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 490 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 490 ~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
++.||.+|---|-- -+.-.|..+...++.+.+.. ++|||.-+||-++.|+..+++ -|+|+|++..++-.-.
T Consensus 141 ~d~GcaavMPlgsP-IGSg~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AME--lG~daVLvNTAiA~A~ 211 (247)
T PF05690_consen 141 EDAGCAAVMPLGSP-IGSGRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAME--LGADAVLVNTAIAKAK 211 (247)
T ss_dssp HHTT-SEBEEBSSS-TTT---SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHH--TT-SEEEESHHHHTSS
T ss_pred HHCCCCEEEecccc-cccCcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHH--cCCceeehhhHHhccC
Confidence 99999999765432 12223556778899999988 799999999999999999888 5999999998876533
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0021 Score=72.52 Aligned_cols=211 Identities=9% Similarity=-0.026 Sum_probs=105.9
Q ss_pred CccccCcEEEccCC-CCCcHHHHHHHHHcC-CCEEEecccccchhccCChhhhhhhhccCCCCe-EEEEecCCC--HHHH
Q 005508 335 LIDFREKLYLAPLT-TVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWALLRRHSSEDL-FGVQICGAY--PDTL 409 (693)
Q Consensus 335 ~l~lknriiLAPMt-~v~dlpFRrl~~~~G-adl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p-~gvQL~G~~--pe~~ 409 (693)
.+.++-+|+.|||. ++++..+-.-+.+.| .+++=+.......+ . .....++..-...| |+|.|+.+. +..-
T Consensus 14 ~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l-~---~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e 89 (444)
T TIGR02814 14 DYGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEV-E---QAIHRIQQALPGGPAYGVNLIHSPSDPALE 89 (444)
T ss_pred HhCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHH-H---HHHHHHHHhcCCCCceEEEecccCCCcccH
Confidence 34567789999999 799877654444443 34332121111111 0 11112222223335 999998753 2222
Q ss_pred HHHHHHHhhhCCCcEEEEcCC---CCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC-CCCC--ChhHHH
Q 005508 410 ARTVELIDQQCTVDFIDINMG---CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT-GYFE--GKNRID 483 (693)
Q Consensus 410 ~~AA~~~~~~aG~D~IDLN~G---CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~-G~~d--~~~~~~ 483 (693)
....+++. +.|+..|+.-.+ .|.- +.-+-.|... +... .-.....|..|+.. -.-. -.+-..
T Consensus 90 ~~~v~l~l-~~~V~~veasa~~~~~p~~-v~~r~~G~~~--~~~g--------~~~~~~~ViakVsr~~vAs~f~~p~p~ 157 (444)
T TIGR02814 90 WGLVDLLL-RHGVRIVEASAFMQLTPAL-VRYRAKGLHR--DADG--------RVVIRNRLIAKVSRPEVAEAFMSPAPA 157 (444)
T ss_pred HHHHHHHH-HcCCCEEEeccccCCCcch-hhhhhccccc--cccc--------cccccceEEEecCCHHHHHHhcCCCcH
Confidence 23345444 468888887532 2221 1101111000 0000 00001234444311 0000 000011
Q ss_pred HHHHH--------------HHHcC-CCEEEEecccccCccCCC-ccHHHHHHH---HHHc------CCCceEEEeCCCCC
Q 005508 484 SLIAD--------------IGTWG-ASAVTVHGRTRQQRYSKL-ADWDYIYQC---ARKA------SDDLQVLGNGDIYS 538 (693)
Q Consensus 484 ~la~~--------------L~eaG-~daItVHgRtr~q~ytg~-Adw~~I~~i---~~~~------~~~IPVIgNGdI~s 538 (693)
.+++. +++.| +|.|++. .-.+++++. .-+..+..+ ++.+ ..+||||+.|||.|
T Consensus 158 ~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve--~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t 235 (444)
T TIGR02814 158 HILQKLLAEGRITREEAELARRVPVADDICVE--ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGT 235 (444)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe--ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCC
Confidence 23333 44555 6999884 233333332 223444444 3433 12599999999999
Q ss_pred HHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 539 YLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 539 ~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
++++..++. -|||+|++|...+.-+
T Consensus 236 ~~~vaAAla--LGAdgV~~GT~flat~ 260 (444)
T TIGR02814 236 PEAAAAAFM--LGADFIVTGSVNQCTV 260 (444)
T ss_pred HHHHHHHHH--cCCcEEEeccHHHhCc
Confidence 999999987 5999999999998754
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00083 Score=76.75 Aligned_cols=136 Identities=18% Similarity=0.124 Sum_probs=91.4
Q ss_pred EecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCC
Q 005508 400 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEG 478 (693)
Q Consensus 400 QL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~ 478 (693)
...+.+++.+ +.++.+. ++|+|.|=++.. +| +...+.+.++.+++.. +.||.++-=.
T Consensus 221 aai~~~~~~~-e~a~~L~-~agvdvivvD~a--------~g-------~~~~vl~~i~~i~~~~p~~~vi~g~v~----- 278 (486)
T PRK05567 221 AAVGVGADNE-ERAEALV-EAGVDVLVVDTA--------HG-------HSEGVLDRVREIKAKYPDVQIIAGNVA----- 278 (486)
T ss_pred eecccCcchH-HHHHHHH-HhCCCEEEEECC--------CC-------cchhHHHHHHHHHhhCCCCCEEEeccC-----
Confidence 3334455554 4444444 468998754321 11 2245677788888877 8898883322
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecc------cccCccCCCccHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCC
Q 005508 479 KNRIDSLIADIGTWGASAVTVHGR------TRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPE 551 (693)
Q Consensus 479 ~~~~~~la~~L~eaG~daItVHgR------tr~q~ytg~Adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~g 551 (693)
..+-+..|.++|+++|.+-+. +|...-.+.+.+..+.+|++.+. .++|||+.|+|.++.|+.++|. .|
T Consensus 279 ---t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla--~G 353 (486)
T PRK05567 279 ---TAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALA--AG 353 (486)
T ss_pred ---CHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHH--hC
Confidence 245567778899999976321 12222234567888888887542 2599999999999999999998 59
Q ss_pred cCEEEEcHHHh
Q 005508 552 LASCMIARGAL 562 (693)
Q Consensus 552 aDgVMIGRgaL 562 (693)
||+||||..+-
T Consensus 354 A~~v~~G~~~a 364 (486)
T PRK05567 354 ASAVMLGSMLA 364 (486)
T ss_pred CCEEEECcccc
Confidence 99999996553
|
|
| >PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.5e-05 Score=55.54 Aligned_cols=25 Identities=44% Similarity=1.139 Sum_probs=19.9
Q ss_pred cccCChhhhccCCCCCCCCCCCCCCCCC
Q 005508 100 ASHLCPEVAKSGDVSSCPYKDKCRFSHD 127 (693)
Q Consensus 100 ~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd 127 (693)
+..+|..|+..| .|+||++|+|+|+
T Consensus 2 k~~~C~~f~~~g---~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTG---TCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS-----TTGGGSSSBSS
T ss_pred ccccChhhccCC---ccCCCCCcCccCC
Confidence 468999999987 8999999999997
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C .... |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0011 Score=69.79 Aligned_cols=156 Identities=14% Similarity=0.171 Sum_probs=98.4
Q ss_pred eEEEEecCC--CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCC------ccccccC--ChHHHHHHHHHhc-cccc
Q 005508 396 LFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG------AGSCLLT--KPMRMKGIIEATS-GTVD 464 (693)
Q Consensus 396 p~gvQL~G~--~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G------~GsaLl~--rp~~l~eIV~av~-~~v~ 464 (693)
.|+.=|... +.+.+.+++..+. ..|+|.||| |=|.+.-.-|| .--+|-+ +.+.+.++++.++ ...+
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~-~~Gad~iEl--GiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~ 89 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALV-EAGADIIEL--GIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPT 89 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH-HCCCCEEEE--CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 455555555 5678888888776 579999999 55654322222 1112211 4567788899998 5568
Q ss_pred cCEEEEecCCCCCC--hhHHHHHHHHHHHcCCCEEEEec--------------------------cccc-----------
Q 005508 465 KPITIKVRTGYFEG--KNRIDSLIADIGTWGASAVTVHG--------------------------RTRQ----------- 505 (693)
Q Consensus 465 iPVtVKiR~G~~d~--~~~~~~la~~L~eaG~daItVHg--------------------------Rtr~----------- 505 (693)
+|+.+ +++... .--..++++.+.++|++++.|.. -+..
T Consensus 90 ~p~vl---m~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~ 166 (258)
T PRK13111 90 IPIVL---MTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHAS 166 (258)
T ss_pred CCEEE---EecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 89754 222211 00233556666666666665521 1100
Q ss_pred --------CccCCC-----cc-HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 506 --------QRYSKL-----AD-WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 506 --------q~ytg~-----Ad-w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
...||. .+ -+++.++++.. ++||+..+||.+++++.+++. .||||.||.+++
T Consensus 167 gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~---~ADGviVGSaiv 232 (258)
T PRK13111 167 GFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAA---VADGVIVGSALV 232 (258)
T ss_pred CcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHH---hCCEEEEcHHHH
Confidence 011222 12 45889999877 799999999999999999774 499999999876
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0014 Score=67.74 Aligned_cols=123 Identities=15% Similarity=0.023 Sum_probs=87.9
Q ss_pred hCCCcEEEE--cCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec--CCCCCChhHHHHHHHHHHHcCC
Q 005508 419 QCTVDFIDI--NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR--TGYFEGKNRIDSLIADIGTWGA 494 (693)
Q Consensus 419 ~aG~D~IDL--N~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR--~G~~d~~~~~~~la~~L~eaG~ 494 (693)
..|+|.||+ |.|++. -.+.+.+.+-++++++.+ .|+.+|+= .+.- +.++...+++.+.++|+
T Consensus 85 ~~GA~EiD~Vin~~~~~------------~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~~e~i~~a~~~~~~aga 150 (221)
T PRK00507 85 ANGADEIDMVINIGALK------------SGDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-TDEEKVKACEIAKEAGA 150 (221)
T ss_pred HcCCceEeeeccHHHhc------------CCCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-CHHHHHHHHHHHHHhCC
Confidence 358999996 444443 235677777777777755 36677772 2221 34567888999999999
Q ss_pred CEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHH
Q 005508 495 SAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 495 daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 561 (693)
|+|--..... .+.+..+.|+.+++.++..++|.++|||.|++++.+++. .||+-+-..+|.
T Consensus 151 dfIKTsTG~~----~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~--aGA~riGtS~~~ 211 (221)
T PRK00507 151 DFVKTSTGFS----TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIE--AGATRLGTSAGV 211 (221)
T ss_pred CEEEcCCCCC----CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHH--cCcceEccCcHH
Confidence 9886543321 244777888888888765799999999999999999987 588887666554
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=70.10 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=85.6
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccc---cccCEEEEec-----CCCCCChhHHHH
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT---VDKPITIKVR-----TGYFEGKNRIDS 484 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~---v~iPVtVKiR-----~G~~d~~~~~~~ 484 (693)
++.+. ..|+|+|++-+ + .|+. ..+.+.+.++.+.+. .++||.|=.. +....+......
T Consensus 99 ve~A~-~~Gad~v~~~~--------~--~g~~---~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~ 164 (267)
T PRK07226 99 VEEAI-KLGADAVSVHV--------N--VGSE---TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAH 164 (267)
T ss_pred HHHHH-HcCCCEEEEEE--------e--cCCh---hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHH
Confidence 44444 46999999842 1 1110 022234444444443 3788777321 111112234455
Q ss_pred HHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCC--CHHHHHHHH---hcCCCcCEEEEcH
Q 005508 485 LIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY--SYLDWNKHK---SDCPELASCMIAR 559 (693)
Q Consensus 485 la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~--s~eDa~~~l---~~~~gaDgVMIGR 559 (693)
.++...+.|+|+|-.. |.+ +.+.++++.+.. ++||++.|||. +++++.+++ .+ .||+|+.+||
T Consensus 165 a~~~a~e~GAD~vKt~-------~~~--~~~~l~~~~~~~--~ipV~a~GGi~~~~~~~~l~~v~~~~~-aGA~Gis~gr 232 (267)
T PRK07226 165 AARVAAELGADIVKTN-------YTG--DPESFREVVEGC--PVPVVIAGGPKTDTDREFLEMVRDAME-AGAAGVAVGR 232 (267)
T ss_pred HHHHHHHHCCCEEeeC-------CCC--CHHHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHH-cCCcEEehhh
Confidence 5677789999999553 433 678888888876 69999999999 899888876 23 6999999999
Q ss_pred HHhhCCCchhHH
Q 005508 560 GALIKPWIFTEI 571 (693)
Q Consensus 560 gaL~nPwiF~eI 571 (693)
.++..|..-..+
T Consensus 233 ~i~~~~~p~~~~ 244 (267)
T PRK07226 233 NVFQHEDPEAIT 244 (267)
T ss_pred hhhcCCCHHHHH
Confidence 999887744443
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0066 Score=63.54 Aligned_cols=208 Identities=12% Similarity=0.088 Sum_probs=127.9
Q ss_pred ccccCCccccCcEEEccCCCCCc-HHHHHHHHHcCCCEEEecccccc-hhccCChhhhhhhhccCCCCeEEEEecC-CCH
Q 005508 330 SREKKLIDFREKLYLAPLTTVGN-LPFRRVCKVLGADVTCGEMAMCT-NLLQGQASEWALLRRHSSEDLFGVQICG-AYP 406 (693)
Q Consensus 330 p~ek~~l~lknriiLAPMt~v~d-lpFRrl~~~~Gadl~~TEM~~a~-~ll~g~~~e~~ll~~h~~e~p~gvQL~G-~~p 406 (693)
+..+.+..|..|++|-- ..|.+ .-.+.....-|++++..-+=-.. ....+..+-|.++.. ..-.+-..-+| .+.
T Consensus 7 ~l~i~g~~f~SRL~lGT-gky~s~~~~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i~~--~~~~~LPNTaGc~tA 83 (267)
T CHL00162 7 KLKIGNKSFNSRLMLGT-GKYKSLKDAIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGLDW--NKLWLLPNTAGCQTA 83 (267)
T ss_pred ceEECCEEeecceEEec-CCCCCHHHHHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhhch--hccEECCcCcCCCCH
Confidence 45788999999999842 23433 44455555679987632111111 001123344555532 12122233333 468
Q ss_pred HHHHHHHHHHhhhC------CCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChh
Q 005508 407 DTLARTVELIDQQC------TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKN 480 (693)
Q Consensus 407 e~~~~AA~~~~~~a------G~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~ 480 (693)
++.++.|+++.+-. +-++|-|-. ..+ --.|+-|+-.+.+-.+.+.+. ++-|..-+. ++
T Consensus 84 ~EAv~~A~laRe~~~~~~~~~~~wIKLEV-------i~D--~~~LlPD~~etl~Aae~Lv~e-GF~VlPY~~----~D-- 147 (267)
T CHL00162 84 EEAIRMAFLGRELAKQLGQEDNNFVKLEV-------ISD--PKYLLPDPIGTLKAAEFLVKK-GFTVLPYIN----AD-- 147 (267)
T ss_pred HHHHHHHHHHHHHhccccccCCCeEEEEE-------eCC--CcccCCChHHHHHHHHHHHHC-CCEEeecCC----CC--
Confidence 99999999887544 456666532 111 124676766555544444321 333322222 21
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
.-++++|+++||.+|---|-. -+.-.|..+...|+.+.+.. ++|||.-+||.+++|+..+++ -|+|||+++.|
T Consensus 148 --~v~a~rLed~Gc~aVMPlgsP-IGSg~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmE--lGaDgVL~nSa 220 (267)
T CHL00162 148 --PMLAKHLEDIGCATVMPLGSP-IGSGQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAME--LGASGVLLNTA 220 (267)
T ss_pred --HHHHHHHHHcCCeEEeeccCc-ccCCCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHH--cCCCEEeecce
Confidence 468999999999999764422 11123556777889998876 699999999999999999987 59999999999
Q ss_pred Hhh
Q 005508 561 ALI 563 (693)
Q Consensus 561 aL~ 563 (693)
+..
T Consensus 221 Iak 223 (267)
T CHL00162 221 VAQ 223 (267)
T ss_pred eec
Confidence 874
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0015 Score=67.58 Aligned_cols=59 Identities=7% Similarity=-0.078 Sum_probs=51.9
Q ss_pred CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHH
Q 005508 510 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 571 (693)
Q Consensus 510 g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eI 571 (693)
.+.++++|+++++.+. ++||+..|||.|.+++++++. .|||+|.+|..+..||.++.++
T Consensus 163 ~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~--aGAD~VVVGs~~~~dp~~~~~~ 221 (223)
T TIGR01768 163 EPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAE--AGADTIVTGNVIEEDVDKALET 221 (223)
T ss_pred CCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHH--cCCCEEEECcHHhhCHHHHHHh
Confidence 4456899999999874 599999999999999999876 5899999999999999888765
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0014 Score=67.60 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=99.7
Q ss_pred EEEEecCCCHHHHHHHHHHHhhhCCCcE--EEEcCCCCCcccccCCccccccCChHHHHHHHHHhccc-cccCEEEEecC
Q 005508 397 FGVQICGAYPDTLARTVELIDQQCTVDF--IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT-VDKPITIKVRT 473 (693)
Q Consensus 397 ~gvQL~G~~pe~~~~AA~~~~~~aG~D~--IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~-v~iPVtVKiR~ 473 (693)
+..+|...+...+.+-.+.+. .+|+|. |||-=|+=+++. .+| -++++++++. +++|+.|=+=.
T Consensus 2 i~pSil~ad~~~l~~~i~~l~-~~g~~~lH~DvmDG~Fvpn~---tfg----------~~~i~~i~~~~~~~~~dvHLMv 67 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVL-AAGADVVHFDVMDNHYVPNL---TFG----------APICKALRDYGITAPIDVHLMV 67 (220)
T ss_pred cchhhhhcCHHHHHHHHHHHH-HcCCCEEEEecccCcccCcc---ccC----------HHHHHHHHHhCCCCCEEEEecc
Confidence 345778888888988888887 578886 555446555443 233 3567778776 57887775443
Q ss_pred CCCCChhHHHHHHHHHHHcCCCEEEEeccc-----------cc----------------------------------Ccc
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHGRT-----------RQ----------------------------------QRY 508 (693)
Q Consensus 474 G~~d~~~~~~~la~~L~eaG~daItVHgRt-----------r~----------------------------------q~y 508 (693)
.+...+++.+.++|++.||+|.-. ++ .++
T Consensus 68 ------~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGf 141 (220)
T PRK08883 68 ------KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGF 141 (220)
T ss_pred ------CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCC
Confidence 235678889999999999999542 00 011
Q ss_pred CCC----ccHHHHHHHHHHcCC---CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 509 SKL----ADWDYIYQCARKASD---DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 509 tg~----Adw~~I~~i~~~~~~---~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
.|. ..++-|+++++.... ++||.+-|||. .+.+..+++ .|||++.+|+++...+.
T Consensus 142 gGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~--aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 142 GGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAE--AGADMFVAGSAIFGQPD 203 (220)
T ss_pred CCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHH--cCCCEEEEeHHHhCCCC
Confidence 111 123456666655421 38999999997 899988766 69999999999876544
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00041 Score=72.03 Aligned_cols=89 Identities=11% Similarity=0.130 Sum_probs=75.9
Q ss_pred HHHHHHHHHHH-cCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 481 RIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 481 ~~~~la~~L~e-aG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
+..++|+.+.+ .|++.|+|-.-..... ....+.+.|+++.+.+ .+||..-|||.|.+|+++++. .||+-|.||.
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~-~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~--~Ga~kvvigt 106 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKA-QHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFA--AGINYCIVGT 106 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccccc-CCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHH--CCCCEEEECc
Confidence 46679999998 7999999976543321 3446899999999987 699999999999999999887 6999999999
Q ss_pred HHhhCCCchhHHHhc
Q 005508 560 GALIKPWIFTEIKEQ 574 (693)
Q Consensus 560 gaL~nPwiF~eIke~ 574 (693)
.++.||.++.++.+.
T Consensus 107 ~a~~~~~~l~~~~~~ 121 (234)
T PRK13587 107 KGIQDTDWLKEMAHT 121 (234)
T ss_pred hHhcCHHHHHHHHHH
Confidence 999999999998764
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00092 Score=76.29 Aligned_cols=139 Identities=18% Similarity=0.165 Sum_probs=96.4
Q ss_pred EecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEE-EecCCCCC
Q 005508 400 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITI-KVRTGYFE 477 (693)
Q Consensus 400 QL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtV-KiR~G~~d 477 (693)
.+.|-..+....+..++. .|+|.|=|... .|. -..+.++|+.+++.. +++|.+ -+-
T Consensus 220 aav~~~~~~~~~a~~Lv~--aGvd~i~~D~a--------~~~-------~~~~~~~i~~ik~~~p~~~v~agnv~----- 277 (479)
T PRK07807 220 AAVGINGDVAAKARALLE--AGVDVLVVDTA--------HGH-------QEKMLEALRAVRALDPGVPIVAGNVV----- 277 (479)
T ss_pred hhhccChhHHHHHHHHHH--hCCCEEEEecc--------CCc-------cHHHHHHHHHHHHHCCCCeEEeeccC-----
Confidence 334444555544444443 58888766531 122 456788999999877 677766 222
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeccc----ccCccC--CCccHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCC
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHGRT----RQQRYS--KLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCP 550 (693)
Q Consensus 478 ~~~~~~~la~~L~eaG~daItVHgRt----r~q~yt--g~Adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~ 550 (693)
+.+-++.|.++|+|+|-|--.+ ..+.|+ +.+++..|.+|++... .++|||+-|+|.++.|+.++|. .
T Consensus 278 ----t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~--~ 351 (479)
T PRK07807 278 ----TAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALA--A 351 (479)
T ss_pred ----CHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH--c
Confidence 3456677888999999763332 223443 3468999999988432 1699999999999999999997 5
Q ss_pred CcCEEEEcHHHhhCCC
Q 005508 551 ELASCMIARGALIKPW 566 (693)
Q Consensus 551 gaDgVMIGRgaL~nPw 566 (693)
|||+||+|+.++.-..
T Consensus 352 ga~~v~~g~~~ag~~E 367 (479)
T PRK07807 352 GASNVMIGSWFAGTYE 367 (479)
T ss_pred CCCeeeccHhhccCcc
Confidence 9999999998876543
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00087 Score=76.39 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=93.0
Q ss_pred EEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCC
Q 005508 398 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYF 476 (693)
Q Consensus 398 gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~ 476 (693)
+-.+.+...+...++..++. .|+|.|=|-...+ ++..+.++|+.+++.. ++||.+ |.-
T Consensus 216 Vgaav~~~~~~~~ra~~Lv~--aGVd~i~~D~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~----g~~ 274 (475)
T TIGR01303 216 IGAAVGINGDVGGKAKALLD--AGVDVLVIDTAHG---------------HQVKMISAIKAVRALDLGVPIVA----GNV 274 (475)
T ss_pred ehheeeeCccHHHHHHHHHH--hCCCEEEEeCCCC---------------CcHHHHHHHHHHHHHCCCCeEEE----ecc
Confidence 33444555566666666554 5899877754332 4578899999999876 899988 311
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeccc----ccCccCC--CccHHHHHHHH---HHcCCCceEEEeCCCCCHHHHHHHHh
Q 005508 477 EGKNRIDSLIADIGTWGASAVTVHGRT----RQQRYSK--LADWDYIYQCA---RKASDDLQVLGNGDIYSYLDWNKHKS 547 (693)
Q Consensus 477 d~~~~~~~la~~L~eaG~daItVHgRt----r~q~ytg--~Adw~~I~~i~---~~~~~~IPVIgNGdI~s~eDa~~~l~ 547 (693)
.+.+-+..|.++|+++|-|-++. ..+.|++ .+-...+.+|+ +.. ++|||+-|+|.++.|+.++|.
T Consensus 275 ----~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~~~di~kala 348 (475)
T TIGR01303 275 ----VSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRHPRDVALALA 348 (475)
T ss_pred ----CCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHH
Confidence 12456677888999999875542 1123332 23334444443 223 599999999999999999998
Q ss_pred cCCCcCEEEEcHHHhh
Q 005508 548 DCPELASCMIARGALI 563 (693)
Q Consensus 548 ~~~gaDgVMIGRgaL~ 563 (693)
.|||+||+|+-+-.
T Consensus 349 --~GA~~vm~g~~~ag 362 (475)
T TIGR01303 349 --AGASNVMVGSWFAG 362 (475)
T ss_pred --cCCCEEeechhhcc
Confidence 59999999976643
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0039 Score=62.88 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=105.3
Q ss_pred CCCCcHHHHHHHHHcCCCEE-EecccccchhccCChhhhhhhhccCCC--CeEEEEecCCCHHHHHHHHHHHhhhCCCcE
Q 005508 348 TTVGNLPFRRVCKVLGADVT-CGEMAMCTNLLQGQASEWALLRRHSSE--DLFGVQICGAYPDTLARTVELIDQQCTVDF 424 (693)
Q Consensus 348 t~v~dlpFRrl~~~~Gadl~-~TEM~~a~~ll~g~~~e~~ll~~h~~e--~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~ 424 (693)
.++++.---+.|.++|++++ +-..-.+...+ ....-..+...-.. ..+++ +...+++.+.+.|. .+++|+
T Consensus 4 CGi~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v--~~~~a~~l~~~~~~~~~~V~v-~vn~~~~~i~~ia~----~~~~d~ 76 (203)
T cd00405 4 CGITTLEDALAAAEAGADAIGFIFAPKSPRYV--SPEQAREIVAALPPFVKRVGV-FVNEDLEEILEIAE----ELGLDV 76 (203)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEecCCCCCCCC--CHHHHHHHHHhCCCCCcEEEE-EeCCCHHHHHHHHH----hcCCCE
Confidence 45566665567778898865 11111111111 01111112211122 23333 22344555555543 468999
Q ss_pred EEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccc
Q 005508 425 IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR 504 (693)
Q Consensus 425 IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr 504 (693)
|.||-.- .+ +.++.+++..+.++...+..... . ...+ ......|+|++.+...+.
T Consensus 77 Vqlhg~e----------------~~----~~~~~l~~~~~~~~i~~i~~~~~---~-~~~~-~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 77 VQLHGDE----------------SP----EYCAQLRARLGLPVIKAIRVKDE---E-DLEK-AAAYAGEVDAILLDSKSG 131 (203)
T ss_pred EEECCCC----------------CH----HHHHHHHhhcCCcEEEEEecCCh---h-hHHH-hhhccccCCEEEEcCCCC
Confidence 9997321 12 23444555445666644454321 1 1122 233457999998877665
Q ss_pred cCc--cCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCc
Q 005508 505 QQR--YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 567 (693)
Q Consensus 505 ~q~--ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwi 567 (693)
... ...+.+|+.+++++ . .+||++.||| +++.+.+++.. ..++||-|.+|+...|-+
T Consensus 132 ~~~Gg~g~~~~~~~l~~~~--~--~~PvilaGGI-~~~Nv~~~i~~-~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 132 GGGGGTGKTFDWSLLRGLA--S--RKPVILAGGL-TPDNVAEAIRL-VRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CCCCCCcceEChHHhhccc--c--CCCEEEECCC-ChHHHHHHHHh-cCCCEEEcCCcccCCCCC
Confidence 422 33457999998887 4 6899999999 99999998875 449999999999887764
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0021 Score=65.21 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 512 ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 512 Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
.|+.+++++.+ . +++||+-|.+.||+.+.++++ .||++|.|| ||+..|.
T Consensus 168 pDf~lvk~l~~-~--~~~vIAEGr~~tP~~Ak~a~~--~Ga~aVvVG-sAITRp~ 216 (229)
T COG3010 168 PDFQLVKQLSD-A--GCRVIAEGRYNTPEQAKKAIE--IGADAVVVG-SAITRPE 216 (229)
T ss_pred CcHHHHHHHHh-C--CCeEEeeCCCCCHHHHHHHHH--hCCeEEEEC-cccCCHH
Confidence 58899999988 4 699999999999999999987 599999999 6778874
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0024 Score=64.58 Aligned_cols=154 Identities=14% Similarity=0.184 Sum_probs=91.5
Q ss_pred EEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCC
Q 005508 397 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF 476 (693)
Q Consensus 397 ~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~ 476 (693)
+.+.|...++..+.+.++.+. +.|+|.|.+-. .+|- +..+..+..+.++.+++.+..|+.|-+-..
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~-~~G~~~i~l~~--------~d~~---~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~-- 71 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVE-AAGADWIHVDV--------MDGH---FVPNLTIGPPVVEAIRKVTKLPLDVHLMVE-- 71 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHH-HcCCCEEEEeC--------ccCC---cCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--
Confidence 667888899999999999887 68999999942 1110 111211334556666554444443433331
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeccccc------------------------------------C---------ccCCC
Q 005508 477 EGKNRIDSLIADIGTWGASAVTVHGRTRQ------------------------------------Q---------RYSKL 511 (693)
Q Consensus 477 d~~~~~~~la~~L~eaG~daItVHgRtr~------------------------------------q---------~ytg~ 511 (693)
+..+++..+.++|++.|+||+.... . ..++.
T Consensus 72 ----d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~ 147 (220)
T PRK05581 72 ----NPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQ 147 (220)
T ss_pred ----CHHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcc
Confidence 1233445556888888888864200 0 00111
Q ss_pred -ccHHHHHH---HHHHcCC---CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHH
Q 005508 512 -ADWDYIYQ---CARKASD---DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 571 (693)
Q Consensus 512 -Adw~~I~~---i~~~~~~---~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eI 571 (693)
.+|..+.. +++..+. +.+|..-|||.. +.+.+++. .|+|+|.+|++++..|+....+
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~--~GaD~vvvgSai~~~~d~~~~~ 211 (220)
T PRK05581 148 KFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAE--AGADVFVAGSAVFGAPDYKEAI 211 (220)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHH--cCCCEEEEChhhhCCCCHHHHH
Confidence 13443333 3333210 133557799976 88888765 6899999999999888765444
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0063 Score=62.69 Aligned_cols=147 Identities=9% Similarity=0.118 Sum_probs=95.9
Q ss_pred CCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCC-CCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe
Q 005508 393 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMG-CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 393 ~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~G-CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi 471 (693)
...++.+-|.-++|+.+...+ . .+|+|+|=+|+| +.. +.+.+.++.++.. ++-+.+=+
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~---~-~~gad~v~vH~~q~~~----------------d~~~~~~~~i~~~-g~~iGls~ 122 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF---A-KAGASIFTFHIEQAST----------------IHLHRLIQQIKSA-GMKAGVVL 122 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH---H-HcCCCEEEEeeccccc----------------hhHHHHHHHHHHC-CCeEEEEE
Confidence 445678999999999987666 2 468999999876 221 1233444444432 22222212
Q ss_pred cCCCCCChhHHHHHHHHHHHcC-CCEE---EEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh
Q 005508 472 RTGYFEGKNRIDSLIADIGTWG-ASAV---TVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 547 (693)
Q Consensus 472 R~G~~d~~~~~~~la~~L~eaG-~daI---tVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~ 547 (693)
.. .+..+.+..+.+.| +|.| ++|.....|.+ .+..++.+.++++... ++||.+-||| +.+.+.+++.
T Consensus 123 ~~------~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~-~~~~~~~i~~~~~~~~-~~~I~a~GGI-~~e~i~~l~~ 193 (229)
T PLN02334 123 NP------GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSF-IPSMMDKVRALRKKYP-ELDIEVDGGV-GPSTIDKAAE 193 (229)
T ss_pred CC------CCCHHHHHHHHhccCCCEEEEEEEecCCCcccc-CHHHHHHHHHHHHhCC-CCcEEEeCCC-CHHHHHHHHH
Confidence 21 11234455555553 9999 66765544443 3345677888888754 5899999999 7999988776
Q ss_pred cCCCcCEEEEcHHHhhCCCchhHH
Q 005508 548 DCPELASCMIARGALIKPWIFTEI 571 (693)
Q Consensus 548 ~~~gaDgVMIGRgaL~nPwiF~eI 571 (693)
.|+|+|.+|++++..+.+...+
T Consensus 194 --aGad~vvvgsai~~~~d~~~~~ 215 (229)
T PLN02334 194 --AGANVIVAGSAVFGAPDYAEVI 215 (229)
T ss_pred --cCCCEEEEChHHhCCCCHHHHH
Confidence 6999999999988777654443
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00028 Score=72.83 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+..++|+.+.+.|++.|+|..=.+.. ...+.+++.|.++.+.+ .+||...|||.|.+|+++++. .||+-|.||..
T Consensus 30 dP~~~a~~~~~~g~~~l~ivDLdaa~-~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~--~Ga~~Vvigt~ 104 (229)
T PF00977_consen 30 DPVEVAKAFNEQGADELHIVDLDAAK-EGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLD--AGADRVVIGTE 104 (229)
T ss_dssp CHHHHHHHHHHTT-SEEEEEEHHHHC-CTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHH--TT-SEEEESHH
T ss_pred CHHHHHHHHHHcCCCEEEEEEccCcc-cCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHH--hCCCEEEeChH
Confidence 56789999999999999997643321 12346889999999998 599999999999999999887 58999999999
Q ss_pred HhhCCCchhHHHh
Q 005508 561 ALIKPWIFTEIKE 573 (693)
Q Consensus 561 aL~nPwiF~eIke 573 (693)
++.||.++.++.+
T Consensus 105 ~~~~~~~l~~~~~ 117 (229)
T PF00977_consen 105 ALEDPELLEELAE 117 (229)
T ss_dssp HHHCCHHHHHHHH
T ss_pred HhhchhHHHHHHH
Confidence 9999999999876
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0054 Score=63.48 Aligned_cols=148 Identities=11% Similarity=0.123 Sum_probs=99.3
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhhhCCCcEE--EEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEe
Q 005508 395 DLFGVQICGAYPDTLARTVELIDQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKV 471 (693)
Q Consensus 395 ~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~I--DLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKi 471 (693)
..+.+.|.+.++-.+.+-.+.+. ..|+|.| ||-=|.=+++. .+| .++|+++++.. ++|+.|++
T Consensus 7 ~~i~pSi~~~d~~~l~~~~~~l~-~~~~~~~H~DimDg~fvpn~---~~G----------~~~v~~lr~~~~~~~lDvHL 72 (228)
T PTZ00170 7 AIIAPSILAADFSKLADEAQDVL-SGGADWLHVDVMDGHFVPNL---SFG----------PPVVKSLRKHLPNTFLDCHL 72 (228)
T ss_pred CEEehhHhhcCHHHHHHHHHHHH-HcCCCEEEEecccCccCCCc---CcC----------HHHHHHHHhcCCCCCEEEEE
Confidence 34677888999999999999987 5687764 44334333322 223 36677888777 89999998
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCCEEEEecccccC------------c---------cCCCcc-----------------
Q 005508 472 RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQ------------R---------YSKLAD----------------- 513 (693)
Q Consensus 472 R~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q------------~---------ytg~Ad----------------- 513 (693)
=+ .+...+++.+.++|++.||||.-+... . .+...+
T Consensus 73 m~------~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~ 146 (228)
T PTZ00170 73 MV------SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMT 146 (228)
T ss_pred CC------CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhh
Confidence 85 235567788999999999999753111 0 000001
Q ss_pred --------------HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 514 --------------WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 514 --------------w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
++-++++++..+ .+.|...||| +.+.+..+.. .|||.+.+||++...+.
T Consensus 147 v~pG~~gq~~~~~~~~ki~~~~~~~~-~~~I~VdGGI-~~~ti~~~~~--aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 147 VEPGFGGQSFMHDMMPKVRELRKRYP-HLNIQVDGGI-NLETIDIAAD--AGANVIVAGSSIFKAKD 209 (228)
T ss_pred cccCCCCcEecHHHHHHHHHHHHhcc-cCeEEECCCC-CHHHHHHHHH--cCCCEEEEchHHhCCCC
Confidence 123334444433 4678889999 6677877665 69999999999876665
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00055 Score=71.89 Aligned_cols=79 Identities=10% Similarity=-0.069 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
.++|+.+++.|+.+|||-.= ..+ +++.|.++.+.+ ++||...|||.+ +++++++. .||+.|.||..|+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL------g~~-n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~--aGa~rVvIGS~av 108 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML------GPN-NDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLD--EGASHVIVTSWLF 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC------CCC-cHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHH--cCCCEEEECcHHH
Confidence 78999999999999998743 333 899999999988 699999999997 99999887 6999999999999
Q ss_pred hC----CCchhHHHh
Q 005508 563 IK----PWIFTEIKE 573 (693)
Q Consensus 563 ~n----PwiF~eIke 573 (693)
.+ |.++.++.+
T Consensus 109 ~~~~i~~~~~~~i~~ 123 (253)
T TIGR02129 109 TKGKFDLKRLKEIVS 123 (253)
T ss_pred hCCCCCHHHHHHHHH
Confidence 98 778888865
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0018 Score=66.64 Aligned_cols=134 Identities=18% Similarity=0.278 Sum_probs=86.5
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHc
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 492 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ea 492 (693)
|++++ ++|.-+|--=---|.+. +...|-+=|.||..+++|+.+| .|||..|.|+|-. .=|+.|+..
T Consensus 33 A~IAE-~aGAvAVMaLervPaDi--R~aGGVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~-------~EA~iLeal 98 (296)
T COG0214 33 ARIAE-EAGAVAVMALERVPADI--RAAGGVARMADPKMIEEIMDAV----SIPVMAKVRIGHF-------VEAQILEAL 98 (296)
T ss_pred HHHHH-hcCceeEeehhhCcHHH--HhccCccccCCHHHHHHHHHhc----ccceeeeeecchh-------HHHHHHHHh
Confidence 44444 56754443322356653 3445678899999999888764 7999999999842 236678888
Q ss_pred CCCEEEE-----------e-------------c-----------------ccccCccCC---------------------
Q 005508 493 GASAVTV-----------H-------------G-----------------RTRQQRYSK--------------------- 510 (693)
Q Consensus 493 G~daItV-----------H-------------g-----------------Rtr~q~ytg--------------------- 510 (693)
|+|+|.= | . ||...--||
T Consensus 99 gVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~ 178 (296)
T COG0214 99 GVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQS 178 (296)
T ss_pred CCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 9888841 1 0 111110011
Q ss_pred -------------CccHHHHHHHHHHcCCCceE--EEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC
Q 005508 511 -------------LADWDYIYQCARKASDDLQV--LGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 564 (693)
Q Consensus 511 -------------~Adw~~I~~i~~~~~~~IPV--IgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 564 (693)
.+-++.+.++++.- .+|| ++.|||-+|.|+.-+++ -|||||.+|.|++..
T Consensus 179 ~~edel~~~Ak~~~~p~elv~~~~~~g--rLPVvnFAAGGvATPADAALMM~--LGadGVFVGSGIFKS 243 (296)
T COG0214 179 MTEDELYVVAKELQAPYELVKEVAKLG--RLPVVNFAAGGVATPADAALMMQ--LGADGVFVGSGIFKS 243 (296)
T ss_pred cCHHHHHHHHHHhCChHHHHHHHHHhC--CCCeEeecccCcCChhHHHHHHH--hCCCeEEecccccCC
Confidence 01234444444443 4665 59999999999977665 699999999998763
|
|
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=66.62 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCceEE--EeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHH
Q 005508 514 WDYIYQCARKASDDLQVL--GNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 514 w~~I~~i~~~~~~~IPVI--gNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIk 572 (693)
++++.++++.- .+||+ +.|+|.++.|+.-+++ -|||||.+|.|.+..++=+....
T Consensus 196 ~dLv~~t~q~G--rlPVV~FAaGGvaTPADAALmMQ--LGCdGVFVGSgiFks~dP~k~a~ 252 (296)
T KOG1606|consen 196 YDLVKQTKQLG--RLPVVNFAAGGVATPADAALMMQ--LGCDGVFVGSGIFKSGDPVKRAR 252 (296)
T ss_pred HHHHHHHHHcC--CCceEEecccCcCChhHHHHHHH--cCCCeEEeccccccCCCHHHHHH
Confidence 34445555443 57775 9999999999977655 69999999999998877666543
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.005 Score=64.39 Aligned_cols=155 Identities=11% Similarity=0.053 Sum_probs=102.5
Q ss_pred CCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhh----hhh-------hhccCCCCeEEEEe---cCCCHHHHHHH
Q 005508 347 LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASE----WAL-------LRRHSSEDLFGVQI---CGAYPDTLART 412 (693)
Q Consensus 347 Mt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e----~~l-------l~~h~~e~p~gvQL---~G~~pe~~~~A 412 (693)
|.++-|.+.-++..+.|++++++--.... ...|.+.. +.. +.+.....|+++-+ +|..++...+.
T Consensus 16 ~~~ayD~~sA~i~e~aG~dai~v~~s~~a-~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~ 94 (240)
T cd06556 16 TLTAYDYSMAKQFADAGLNVMLVGDSQGM-TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFEL 94 (240)
T ss_pred EecCCCHHHHHHHHHcCCCEEEEChHHHH-HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHH
Confidence 45777999999999999998876654332 23344321 111 12222235777766 35577888899
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCC---------------CC
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY---------------FE 477 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~---------------~d 477 (693)
++++. ++|+++|.|=-+ ..+.+.|++++++ .+||...+-.-+ .+
T Consensus 95 ~~~l~-~aGa~gv~iED~-------------------~~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~ 153 (240)
T cd06556 95 AKTFM-RAGAAGVKIEGG-------------------EWHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDE 153 (240)
T ss_pred HHHHH-HcCCcEEEEcCc-------------------HHHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHH
Confidence 98888 589999999422 1234456666544 377776443310 01
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCC
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD 535 (693)
Q Consensus 478 ~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGd 535 (693)
..+++++-++.++++|+++|-+++ . +.+.++++.+.+ ++|+++||-
T Consensus 154 ~~~~ai~Ra~ay~~AGAd~i~~e~---------~-~~e~~~~i~~~~--~~P~~~~ga 199 (240)
T cd06556 154 AGEQLIADALAYAPAGADLIVMEC---------V-PVELAKQITEAL--AIPLAGIGA 199 (240)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcC---------C-CHHHHHHHHHhC--CCCEEEEec
Confidence 234566777888999999999974 2 578899999998 699998874
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.002 Score=68.00 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=99.7
Q ss_pred CCeEEEEecCCC--HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCc-----c-cccc--CChHHHHHHHHHhc-cc
Q 005508 394 EDLFGVQICGAY--PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA-----G-SCLL--TKPMRMKGIIEATS-GT 462 (693)
Q Consensus 394 e~p~gvQL~G~~--pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~-----G-saLl--~rp~~l~eIV~av~-~~ 462 (693)
...|+.=|...+ .+.+.++++.+. +.|+|.||| |=|.+.-.-||= . -+|- -+.+.+.++++.++ +.
T Consensus 9 ~~~li~yitaG~P~~~~~~~~~~~l~-~~GaD~iEi--GiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~ 85 (259)
T PF00290_consen 9 RKALIPYITAGYPDLETTLEILKALE-EAGADIIEI--GIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKE 85 (259)
T ss_dssp BTEEEEEEETTSSSHHHHHHHHHHHH-HTTBSSEEE--E--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEE--CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccC
Confidence 345666666654 588999999887 689999999 446543332320 0 0111 14677888999999 67
Q ss_pred cccCEEEEecCCCCCCh--hHHHHHHHHHHHcCCCEEEEec-------------------------c-ccc---------
Q 005508 463 VDKPITIKVRTGYFEGK--NRIDSLIADIGTWGASAVTVHG-------------------------R-TRQ--------- 505 (693)
Q Consensus 463 v~iPVtVKiR~G~~d~~--~~~~~la~~L~eaG~daItVHg-------------------------R-tr~--------- 505 (693)
.++|+.+ +++.+.. --..++++.+.++|+++|.|.. - |..
T Consensus 86 ~~~pivl---m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~ 162 (259)
T PF00290_consen 86 PDIPIVL---MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQ 162 (259)
T ss_dssp TSSEEEE---EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH
T ss_pred CCCCEEE---EeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHh
Confidence 7899887 4432210 1134567777777777776631 0 100
Q ss_pred ----------CccCCCc------cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 506 ----------QRYSKLA------DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 506 ----------q~ytg~A------dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
.+-||.. --++++.+++.. ++||+.-=||.+++++.++. .++|||.||.+++
T Consensus 163 a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~---~~aDGvIVGSa~v 230 (259)
T PF00290_consen 163 ASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA---AGADGVIVGSAFV 230 (259)
T ss_dssp -SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH---TTSSEEEESHHHH
T ss_pred CCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH---ccCCEEEECHHHH
Confidence 0112221 146788888877 79999999999999999976 4799999999875
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0069 Score=62.16 Aligned_cols=122 Identities=13% Similarity=0.031 Sum_probs=86.9
Q ss_pred hCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEE
Q 005508 419 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAV 497 (693)
Q Consensus 419 ~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daI 497 (693)
..|+|.||+-+ .+|..+-.+.+.+.+-++++++.+ ++||-|=+-++.- +.++....++.+.++|+|.|
T Consensus 81 ~~GAdEiDvv~----------n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L-~~~ei~~a~~ia~eaGADfv 149 (211)
T TIGR00126 81 KYGADEVDMVI----------NIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLL-TDEEIRKACEICIDAGADFV 149 (211)
T ss_pred HcCCCEEEeec----------chHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCC-CHHHHHHHHHHHHHhCCCEE
Confidence 46999999954 234444457777777788887766 6677665555542 33566788888899999999
Q ss_pred EEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 498 TVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 498 tVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
-...+. ..+.+..+-+..+++.++.+++|-+.|||.|.+++.+++. .|++-+-.
T Consensus 150 KTsTGf----~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~--aGa~riGt 203 (211)
T TIGR00126 150 KTSTGF----GAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIE--AGASRIGA 203 (211)
T ss_pred EeCCCC----CCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH--HhhHHhCc
Confidence 764321 1244666767777776655799999999999999999987 47765543
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0019 Score=63.24 Aligned_cols=81 Identities=9% Similarity=-0.042 Sum_probs=61.8
Q ss_pred HHHHHHcCCCEEEEecccc---cCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 486 IADIGTWGASAVTVHGRTR---QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr---~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
+..+.+.|+|+|.+..... .+.+..+..|+.++++++.. ++||++-||| +.+++.+++. .|+|+|++|++++
T Consensus 108 ~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi-~~~~i~~~~~--~Ga~~i~~g~~i~ 182 (196)
T cd00564 108 ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGI-TPENAAEVLA--AGADGVAVISAIT 182 (196)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHH--cCCCEEEEehHhh
Confidence 4556678999999865432 22332456799999998876 6999999999 5789988776 6999999999998
Q ss_pred hCCCchhHH
Q 005508 563 IKPWIFTEI 571 (693)
Q Consensus 563 ~nPwiF~eI 571 (693)
..+.....+
T Consensus 183 ~~~~~~~~~ 191 (196)
T cd00564 183 GADDPAAAA 191 (196)
T ss_pred cCCCHHHHH
Confidence 776644444
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0019 Score=67.52 Aligned_cols=87 Identities=10% Similarity=-0.043 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+....++.+.+.|+..|+|--=.... ....+.+.|+++.+.+ .+||-.-|||.|.++++.++. .|||-|+||..
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~--~Ga~~vvigT~ 105 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALT--GGRARVNGGTA 105 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHH--cCCCEEEECch
Confidence 45678888899999999886432222 3446789999999988 599999999999999999887 59999999999
Q ss_pred HhhCCCchhHHHh
Q 005508 561 ALIKPWIFTEIKE 573 (693)
Q Consensus 561 aL~nPwiF~eIke 573 (693)
++.+|+++.++.+
T Consensus 106 a~~~p~~~~~~~~ 118 (243)
T TIGR01919 106 ALENPWWAAAVIR 118 (243)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999999865
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.002 Score=66.94 Aligned_cols=87 Identities=10% Similarity=0.020 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+..++|+.+.+.|++.|+|-.=.... ....+.+.|+++.+.. ..||-.-|||.|.+|+++++. .|||-|.||..
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~--~Ga~kvvigt~ 104 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLS--LDVNALVFSTI 104 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHH--CCCCEEEECch
Confidence 57899999999999999996544332 3445779999999854 259999999999999999887 59999999999
Q ss_pred HhhCCCchhHHHh
Q 005508 561 ALIKPWIFTEIKE 573 (693)
Q Consensus 561 aL~nPwiF~eIke 573 (693)
++.+|.+++++.+
T Consensus 105 a~~~p~~~~~~~~ 117 (232)
T PRK13586 105 VFTNFNLFHDIVR 117 (232)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999999864
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0016 Score=68.12 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
.+..++|+.+.+.|++.|+|-.=...- ...+.+++.|+++.+.+ +||..-|||.|.+++++++. .|||-|.||.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~-~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~--~Ga~rvvigT 103 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAI-ENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRK--LGYRRQIVSS 103 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcc-cCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHH--CCCCEEEECc
Confidence 357899999999999999986543211 12346889999999976 69999999999999999887 6999999999
Q ss_pred HHhhCCCchhHHHh
Q 005508 560 GALIKPWIFTEIKE 573 (693)
Q Consensus 560 gaL~nPwiF~eIke 573 (693)
.++.||.++.++.+
T Consensus 104 ~a~~~p~~l~~~~~ 117 (241)
T PRK14114 104 KVLEDPSFLKFLKE 117 (241)
T ss_pred hhhCCHHHHHHHHH
Confidence 99999999999954
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.016 Score=59.19 Aligned_cols=148 Identities=15% Similarity=0.107 Sum_probs=92.2
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcc-----cc-------cCCccccccCChHHHH----------
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI-----VV-------NKGAGSCLLTKPMRMK---------- 453 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~-----v~-------k~G~GsaLl~rp~~l~---------- 453 (693)
+++.=|.+.+++.+.+.++.+. ..|+..|||-+--|... ++ .-|+|. .-+++.+.
T Consensus 11 ~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGT--V~~~~~~~~a~~aGA~fi 87 (206)
T PRK09140 11 PLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGT--VLSPEQVDRLADAGGRLI 87 (206)
T ss_pred CEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEe--cCCHHHHHHHHHcCCCEE
Confidence 3444577888888888888887 57899999854322110 00 011221 12222222
Q ss_pred -------HHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCC
Q 005508 454 -------GIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD 526 (693)
Q Consensus 454 -------eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~ 526 (693)
++++..+ ..++++.+ |.. +..+ +....+.|+|+|.+.. +....+++++.++..++.
T Consensus 88 vsp~~~~~v~~~~~-~~~~~~~~----G~~----t~~E-~~~A~~~Gad~vk~Fp-------a~~~G~~~l~~l~~~~~~ 150 (206)
T PRK09140 88 VTPNTDPEVIRRAV-ALGMVVMP----GVA----TPTE-AFAALRAGAQALKLFP-------ASQLGPAGIKALRAVLPP 150 (206)
T ss_pred ECCCCCHHHHHHHH-HCCCcEEc----ccC----CHHH-HHHHHHcCCCEEEECC-------CCCCCHHHHHHHHhhcCC
Confidence 2333222 11333332 111 1122 3445678999999843 233568999999998742
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 527 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
.+||++.||| +.+.+.+++. .|+|+|.+++++....+
T Consensus 151 ~ipvvaiGGI-~~~n~~~~~~--aGa~~vav~s~l~~~~~ 187 (206)
T PRK09140 151 DVPVFAVGGV-TPENLAPYLA--AGAAGFGLGSALYRPGQ 187 (206)
T ss_pred CCeEEEECCC-CHHHHHHHHH--CCCeEEEEehHhccccc
Confidence 4999999999 8899999887 69999999999976544
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.014 Score=58.53 Aligned_cols=145 Identities=13% Similarity=0.098 Sum_probs=88.9
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCC-----cccccCC--c--cccccCChHH---------------
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPI-----DIVVNKG--A--GSCLLTKPMR--------------- 451 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~-----~~v~k~G--~--GsaLl~rp~~--------------- 451 (693)
++..=|.+.+++.+...++.+. ..|++.|+|.+--|. ..+.+.. . |++..-+.+.
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~-~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p 83 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALI-EGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP 83 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence 3444466777888877777776 568888888554321 0111100 0 2222222222
Q ss_pred --HHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCce
Q 005508 452 --MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ 529 (693)
Q Consensus 452 --l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IP 529 (693)
..++++..+. .+.++.+ |.. + ..+ +....++|+|+|-+... .+...++++.++...+ ++|
T Consensus 84 ~~~~~~~~~~~~-~~~~~i~----gv~-t---~~e-~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~-~~p 145 (190)
T cd00452 84 GLDPEVVKAANR-AGIPLLP----GVA-T---PTE-IMQALELGADIVKLFPA-------EAVGPAYIKALKGPFP-QVR 145 (190)
T ss_pred CCCHHHHHHHHH-cCCcEEC----CcC-C---HHH-HHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCC-CCe
Confidence 2333333332 2444443 332 1 222 34446799999998531 2235678999888775 599
Q ss_pred EEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 530 VLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 530 VIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
+++.||| +++.+.+++. .|+|+|.++..+.
T Consensus 146 ~~a~GGI-~~~n~~~~~~--~G~~~v~v~s~i~ 175 (190)
T cd00452 146 FMPTGGV-SLDNAAEWLA--AGVVAVGGGSLLP 175 (190)
T ss_pred EEEeCCC-CHHHHHHHHH--CCCEEEEEchhcc
Confidence 9999999 9999999887 5899999998876
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0019 Score=67.12 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
++..+.++.+.+.|+..||+-.=...-. .++-+.++|+++.+.+ ++||=..|||+|.++++.++. .|++-|.+|.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~-g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~--~G~~rViiGt 105 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKA-GGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLD--AGVARVIIGT 105 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeecccccc-CCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHH--CCCCEEEEec
Confidence 4678999999999999999853221110 3445789999999999 699999999999999999887 6999999999
Q ss_pred HHhhCCCchhHHHhcc------------------CC-CCCHHHHHHHHHHHHHHHHHh
Q 005508 560 GALIKPWIFTEIKEQR------------------HW-DITSGERLNIMKDFARFGLEH 598 (693)
Q Consensus 560 gaL~nPwiF~eIke~~------------------~~-d~s~~Erl~il~~~~~~~le~ 598 (693)
.++.||.++.++-+.- -| ..|..+-.+++++|.++++.+
T Consensus 106 ~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ 163 (241)
T COG0106 106 AAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAH 163 (241)
T ss_pred ceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCe
Confidence 9999999999987531 14 334445677888888876643
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.02 Score=57.10 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=94.3
Q ss_pred hhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccC
Q 005508 387 LLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKP 466 (693)
Q Consensus 387 ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iP 466 (693)
.++.+..+.++++.+.-.++... -++.+. ++|+|+|=++.-. .++.+.++++.+++ .+++
T Consensus 46 ~i~~~~~~~~i~~~~~v~~~~~~--~~~~~~-~aGad~i~~h~~~----------------~~~~~~~~i~~~~~-~g~~ 105 (202)
T cd04726 46 ALREAFPDKIIVADLKTADAGAL--EAEMAF-KAGADIVTVLGAA----------------PLSTIKKAVKAAKK-YGKE 105 (202)
T ss_pred HHHHHCCCCEEEEEEEeccccHH--HHHHHH-hcCCCEEEEEeeC----------------CHHHHHHHHHHHHH-cCCe
Confidence 34443345677777665555421 123333 5799999998421 12345667777664 3555
Q ss_pred EEEE-ecCCCCCChhHHHHHHHHHHHcCCCEEEEe-cccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 467 ITIK-VRTGYFEGKNRIDSLIADIGTWGASAVTVH-GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 467 VtVK-iR~G~~d~~~~~~~la~~L~eaG~daItVH-gRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
+.+= +... +..++.. +...|++.|.++ +++. +.+......+.++++++.. ++||+..||| +++.+.+
T Consensus 106 ~~v~~~~~~------t~~e~~~-~~~~~~d~v~~~~~~~~-~~~~~~~~~~~i~~~~~~~--~~~i~~~GGI-~~~~i~~ 174 (202)
T cd04726 106 VQVDLIGVE------DPEKRAK-LLKLGVDIVILHRGIDA-QAAGGWWPEDDLKKVKKLL--GVKVAVAGGI-TPDTLPE 174 (202)
T ss_pred EEEEEeCCC------CHHHHHH-HHHCCCCEEEEcCcccc-cccCCCCCHHHHHHHHhhc--CCCEEEECCc-CHHHHHH
Confidence 5542 2221 2234444 667899999986 3322 2221234567788887764 6999999999 5999999
Q ss_pred HHhcCCCcCEEEEcHHHhhCCCchh
Q 005508 545 HKSDCPELASCMIARGALIKPWIFT 569 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRgaL~nPwiF~ 569 (693)
++. .|||+|.+|+++......-.
T Consensus 175 ~~~--~Gad~vvvGsai~~~~d~~~ 197 (202)
T cd04726 175 FKK--AGADIVIVGRAITGAADPAE 197 (202)
T ss_pred HHh--cCCCEEEEeehhcCCCCHHH
Confidence 876 59999999999876655433
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0093 Score=67.11 Aligned_cols=122 Identities=8% Similarity=0.057 Sum_probs=83.2
Q ss_pred hCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEE
Q 005508 419 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT 498 (693)
Q Consensus 419 ~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daIt 498 (693)
++|+|+|=++...+ ...+.++++.+++ .++++.+-+ ++. .+..+.++.+.+.|+++|.
T Consensus 79 ~aGAdgV~v~g~~~----------------~~~~~~~i~~a~~-~G~~~~~g~-~s~----~t~~e~~~~a~~~GaD~I~ 136 (430)
T PRK07028 79 KAGADIVCILGLAD----------------DSTIEDAVRAARK-YGVRLMADL-INV----PDPVKRAVELEELGVDYIN 136 (430)
T ss_pred HcCCCEEEEecCCC----------------hHHHHHHHHHHHH-cCCEEEEEe-cCC----CCHHHHHHHHHhcCCCEEE
Confidence 57899988762111 1124556666655 466666532 111 1123456777889999999
Q ss_pred EecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCch
Q 005508 499 VHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 568 (693)
Q Consensus 499 VHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF 568 (693)
++.....+.+ ++..+++++++++.+ ++||++-||| +.+.+.+++. .|||+|.+||+++..+.+-
T Consensus 137 ~~pg~~~~~~-~~~~~~~l~~l~~~~--~iPI~a~GGI-~~~n~~~~l~--aGAdgv~vGsaI~~~~d~~ 200 (430)
T PRK07028 137 VHVGIDQQML-GKDPLELLKEVSEEV--SIPIAVAGGL-DAETAAKAVA--AGADIVIVGGNIIKSADVT 200 (430)
T ss_pred EEeccchhhc-CCChHHHHHHHHhhC--CCcEEEECCC-CHHHHHHHHH--cCCCEEEEChHHcCCCCHH
Confidence 8854333332 234578899999877 6999999999 7888888776 5899999999999877653
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0023 Score=67.57 Aligned_cols=84 Identities=5% Similarity=-0.138 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
.+..++|+.+.+.|+.+|||-.=.. ..+.+++.|.++++ + ++||-.-|||++ +++++++. .|||-|+||.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~--~Ga~rViigT 112 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLD--AGASHVIVTS 112 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHH--cCCCEEEEch
Confidence 3578999999999999999864322 34567899999999 7 599999999996 99999887 6999999999
Q ss_pred HHhhC----CCchhHHHh
Q 005508 560 GALIK----PWIFTEIKE 573 (693)
Q Consensus 560 gaL~n----PwiF~eIke 573 (693)
.|+.| |.++.++.+
T Consensus 113 ~Av~~~~~~p~~v~~~~~ 130 (262)
T PLN02446 113 YVFRDGQIDLERLKDLVR 130 (262)
T ss_pred HHHhCCCCCHHHHHHHHH
Confidence 99999 999998865
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0022 Score=66.45 Aligned_cols=87 Identities=9% Similarity=-0.050 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+..++|+.+.+.|++.|+|-.-.... ....+.+.|+++.+.+ .+||..-|||.|.+|+++++. .||+-|.||..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~--~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~--~Ga~~viigt~ 109 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIM--GRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLK--RGASRVIVGTE 109 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCcccc--CCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHH--cCCCeEEEcce
Confidence 57899999999999999998766542 4567899999999988 699999999999999999887 59999999999
Q ss_pred HhhCCCchhHHHhc
Q 005508 561 ALIKPWIFTEIKEQ 574 (693)
Q Consensus 561 aL~nPwiF~eIke~ 574 (693)
++.| .++.++.+.
T Consensus 110 ~~~~-~~~~~~~~~ 122 (233)
T cd04723 110 TLPS-DDDEDRLAA 122 (233)
T ss_pred eccc-hHHHHHHHh
Confidence 9999 988887664
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.019 Score=58.89 Aligned_cols=147 Identities=11% Similarity=0.116 Sum_probs=97.4
Q ss_pred EEEEecCCCHHHHHHHHHHHhhhCCCcE--EEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCC
Q 005508 397 FGVQICGAYPDTLARTVELIDQQCTVDF--IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG 474 (693)
Q Consensus 397 ~gvQL~G~~pe~~~~AA~~~~~~aG~D~--IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G 474 (693)
+..+|.+.++..+.+-.+.+. .+|+|. |||-=|.=+++. .+| -++++++++.+++|+.|=+=.
T Consensus 3 i~pSil~ad~~~l~~el~~l~-~~g~d~lHiDvMDG~FVPN~---tfG----------~~~i~~l~~~t~~~~DvHLMv- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALH-DAPLGSLHLDIEDTSFINNI---TFG----------MKTIQAVAQQTRHPLSFHLMV- 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHH-HCCCCEEEEeccCCCcCCcc---ccC----------HHHHHHHHhcCCCCeEEEecc-
Confidence 567888999999999999887 578886 455334433332 222 456777877777887774433
Q ss_pred CCCChhHHHHHHHHHHHcCCCEEEEecccc-----------cC----------------------------------ccC
Q 005508 475 YFEGKNRIDSLIADIGTWGASAVTVHGRTR-----------QQ----------------------------------RYS 509 (693)
Q Consensus 475 ~~d~~~~~~~la~~L~eaG~daItVHgRtr-----------~q----------------------------------~yt 509 (693)
.+...+++.+.++|++.||+|--+. +. ++.
T Consensus 68 -----~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~ 142 (210)
T PRK08005 68 -----SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGR 142 (210)
T ss_pred -----CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCc
Confidence 2245688999999999999996420 00 111
Q ss_pred CCc----cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCc
Q 005508 510 KLA----DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 567 (693)
Q Consensus 510 g~A----dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwi 567 (693)
|.. -++-|+++++..+ ...|-.-||| +.+.+..+.+ .|||.+.+|+++..++..
T Consensus 143 GQ~f~~~~~~KI~~l~~~~~-~~~I~VDGGI-~~~~i~~l~~--aGad~~V~GsaiF~~~d~ 200 (210)
T PRK08005 143 GQQFIAAMCEKVSQSREHFP-AAECWADGGI-TLRAARLLAA--AGAQHLVIGRALFTTANY 200 (210)
T ss_pred cceecHHHHHHHHHHHHhcc-cCCEEEECCC-CHHHHHHHHH--CCCCEEEEChHhhCCCCH
Confidence 111 1234445554443 3468899999 5777877665 699999999998766653
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.062 Score=58.40 Aligned_cols=209 Identities=11% Similarity=0.038 Sum_probs=124.3
Q ss_pred ccccCCccccCcEEEccCCCCCc-HHHHHHHHHcCCCEEEecccccchh-ccCChhhhhhhhccCCCCeEEEEecC-CCH
Q 005508 330 SREKKLIDFREKLYLAPLTTVGN-LPFRRVCKVLGADVTCGEMAMCTNL-LQGQASEWALLRRHSSEDLFGVQICG-AYP 406 (693)
Q Consensus 330 p~ek~~l~lknriiLAPMt~v~d-lpFRrl~~~~Gadl~~TEM~~a~~l-l~g~~~e~~ll~~h~~e~p~gvQL~G-~~p 406 (693)
+..+.+..|..|++|-- ..|.+ .-.+.....-|++++--- +-=..+ -.+..+-|.++... .-.+-..-+| .+.
T Consensus 74 ~~~i~~~~~~sRl~~Gt-g~y~s~~~~~~a~~asg~e~vTva-~rr~~~~~~~~~~~~~~~~~~--~~~~lpNTag~~ta 149 (326)
T PRK11840 74 SWTVAGKTFSSRLLVGT-GKYKDFEETAAAVEASGAEIVTVA-VRRVNVSDPGAPMLTDYIDPK--KYTYLPNTAGCYTA 149 (326)
T ss_pred CeEECCEEEecceeEec-CCCCCHHHHHHHHHHhCCCEEEEE-EEeecCcCCCcchHHHhhhhc--CCEECccCCCCCCH
Confidence 56789999999998842 23433 444555555688876211 100011 12223445555321 2222233333 468
Q ss_pred HHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHH
Q 005508 407 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLI 486 (693)
Q Consensus 407 e~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la 486 (693)
++..+.|+++.+-.|-++|-|-. ..+. -.|+.|+..+.+-.+.+.+. ++-+.+-+. ++ ..++
T Consensus 150 ~eAv~~a~lare~~~~~~iKlEv-------i~e~--~~llpd~~~~v~aa~~L~~~-Gf~v~~yc~----~d----~~~a 211 (326)
T PRK11840 150 EEAVRTLRLAREAGGWDLVKLEV-------LGDA--KTLYPDMVETLKATEILVKE-GFQVMVYCS----DD----PIAA 211 (326)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEE-------cCCC--CCcccCHHHHHHHHHHHHHC-CCEEEEEeC----CC----HHHH
Confidence 99999999998555778877742 1111 13555555444444333211 232222222 21 5788
Q ss_pred HHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 487 ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 487 ~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
++|.+.|+.+|--- ...-+.-.+..+-++|..+.+.. ++|||.-+||.+++|+..+++ -|+|||.+..|...-+
T Consensus 212 ~~l~~~g~~avmPl-~~pIGsg~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~Ame--lGadgVL~nSaIa~a~ 285 (326)
T PRK11840 212 KRLEDAGAVAVMPL-GAPIGSGLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAME--LGCDGVLMNTAIAEAK 285 (326)
T ss_pred HHHHhcCCEEEeec-cccccCCCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHH--cCCCEEEEcceeccCC
Confidence 99999999544321 11111112334788999999886 699999999999999999988 5999999999987433
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.018 Score=58.45 Aligned_cols=130 Identities=13% Similarity=0.018 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHH
Q 005508 407 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSL 485 (693)
Q Consensus 407 e~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~l 485 (693)
+....-++.+. ..|+|.||+.+ -+|..+-.+.+.+.+-+.++++.+ ++|+-|=+-.+.. +.+.....
T Consensus 69 ~~k~~eve~A~-~~GAdevdvv~----------~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l-~~~~i~~a 136 (203)
T cd00959 69 EVKVAEAREAI-ADGADEIDMVI----------NIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL-TDEEIIKA 136 (203)
T ss_pred HHHHHHHHHHH-HcCCCEEEEee----------cHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC-CHHHHHHH
Confidence 33444344454 46999999964 223333345666666666776665 5666553344433 34567778
Q ss_pred HHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCE
Q 005508 486 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 554 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDg 554 (693)
++...++|+|.|-...+- ..+.+..+-+..+++.+..++||.+.|||.|++++.+++. .|++-
T Consensus 137 ~ria~e~GaD~IKTsTG~----~~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~--~g~~r 199 (203)
T cd00959 137 CEIAIEAGADFIKTSTGF----GPGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIE--AGATR 199 (203)
T ss_pred HHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH--hChhh
Confidence 888899999999764221 1244555655555555433699999999999999999887 46664
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=60.93 Aligned_cols=148 Identities=15% Similarity=0.105 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCC---------
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG--------- 474 (693)
Q Consensus 404 ~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G--------- 474 (693)
.+|..++ +... .+|+++|=++. -...+|+.+ +-++.++..+++||..|==+.
T Consensus 61 ~d~~~~A---~~y~-~~GA~aISVlT-------e~~~F~Gs~--------~~l~~v~~~v~~PvL~KDFIid~~QI~ea~ 121 (247)
T PRK13957 61 YHPVQIA---KTYE-TLGASAISVLT-------DQSYFGGSL--------EDLKSVSSELKIPVLRKDFILDEIQIREAR 121 (247)
T ss_pred CCHHHHH---HHHH-HCCCcEEEEEc-------CCCcCCCCH--------HHHHHHHHhcCCCEEeccccCCHHHHHHHH
Confidence 3555444 3444 57899986642 123355543 334555666688998873221
Q ss_pred ---CC--------CChhHHHHHHHHHHHcCCCEE-EEeccc----------------ccCccCCCccHHHHHHHHHHcCC
Q 005508 475 ---YF--------EGKNRIDSLIADIGTWGASAV-TVHGRT----------------RQQRYSKLADWDYIYQCARKASD 526 (693)
Q Consensus 475 ---~~--------d~~~~~~~la~~L~eaG~daI-tVHgRt----------------r~q~ytg~Adw~~I~~i~~~~~~ 526 (693)
.+ -+.....+|.....+.|.+.| -||... .....+-..|.+...++....|.
T Consensus 122 ~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~ 201 (247)
T PRK13957 122 AFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPP 201 (247)
T ss_pred HcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCC
Confidence 10 012234455555555555554 344321 00112334567778888888877
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 527 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
++.+|+-+||.|++|+..+. . . +|+|.||..++..+..-..+++
T Consensus 202 ~~~~IsESGI~t~~d~~~l~-~-~-~davLvG~~lm~~~d~~~~~~~ 245 (247)
T PRK13957 202 NIVKVGESGIESRSDLDKFR-K-L-VDAALIGTYFMEKKDIRKAWLS 245 (247)
T ss_pred CcEEEEcCCCCCHHHHHHHH-H-h-CCEEEECHHHhCCCCHHHHHHH
Confidence 78899999999999999865 3 4 9999999999999987766543
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.022 Score=60.24 Aligned_cols=157 Identities=14% Similarity=0.171 Sum_probs=99.8
Q ss_pred CeEEEEecCC--CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCC-----ccc-ccc--CChHHHHHHHHHhccc-c
Q 005508 395 DLFGVQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG-----AGS-CLL--TKPMRMKGIIEATSGT-V 463 (693)
Q Consensus 395 ~p~gvQL~G~--~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G-----~Gs-aLl--~rp~~l~eIV~av~~~-v 463 (693)
.-|+.=|.+. +++...++++.+. +.|+|.||| |=|.+.-.-|| ++. +|- -.++...++++.+++. .
T Consensus 17 ~a~i~yit~GdP~~e~s~e~i~~L~-~~GaD~iEL--GvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~ 93 (265)
T COG0159 17 GALIPYVTAGDPDLETSLEIIKTLV-EAGADILEL--GVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGV 93 (265)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH-hCCCCEEEe--cCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC
Confidence 3455444444 5788999998887 689999999 55654322222 111 111 2567888999999955 6
Q ss_pred ccCEEEEecCCCCCC--hhHHHHHHHHHHHcCCCEEEE-------------------------eccc-----------cc
Q 005508 464 DKPITIKVRTGYFEG--KNRIDSLIADIGTWGASAVTV-------------------------HGRT-----------RQ 505 (693)
Q Consensus 464 ~iPVtVKiR~G~~d~--~~~~~~la~~L~eaG~daItV-------------------------HgRt-----------r~ 505 (693)
++|+.+ +++... ..-..+|++.+.++|++.|.| -.=+ ..
T Consensus 94 ~~Pivl---m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 94 KVPIVL---MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred CCCEEE---EEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 889887 333221 112344566666666666654 2111 11
Q ss_pred Cc---------cCCCc------cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 506 QR---------YSKLA------DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 506 q~---------ytg~A------dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
++ -||.. --+.++++++.. ++||+.-=||.+++++.++.+ . ||||.+|.++.
T Consensus 171 ~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~--~-ADGVIVGSAiV 237 (265)
T COG0159 171 SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAE--A-ADGVIVGSAIV 237 (265)
T ss_pred CCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHH--h-CCeEEEcHHHH
Confidence 11 12211 135678888877 799999999999999999776 4 99999998864
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0069 Score=65.94 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccC--ccCCC----ccHHHHHHHHH
Q 005508 449 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQ--RYSKL----ADWDYIYQCAR 522 (693)
Q Consensus 449 p~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q--~ytg~----Adw~~I~~i~~ 522 (693)
++...+.++.+++.+++||.+.|+.. +.++..++++.++++|+++|.||--.... ...+. .-|+.++.+++
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~---~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~ 162 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGS---SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKS 162 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccC---CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHh
Confidence 45666677777777789999999762 34677899999999999999997532111 11111 13677888888
Q ss_pred HcCCCceEEEe--CCCCCHHHHHHHHhcCCCcCEEEE-cH
Q 005508 523 KASDDLQVLGN--GDIYSYLDWNKHKSDCPELASCMI-AR 559 (693)
Q Consensus 523 ~~~~~IPVIgN--GdI~s~eDa~~~l~~~~gaDgVMI-GR 559 (693)
.+ ++||++. +++.+..++.+.+++ .|||+|.+ +|
T Consensus 163 ~~--~iPV~vKl~p~~~~~~~~a~~l~~-~G~dgI~~~n~ 199 (334)
T PRK07565 163 AV--SIPVAVKLSPYFSNLANMAKRLDA-AGADGLVLFNR 199 (334)
T ss_pred cc--CCcEEEEeCCCchhHHHHHHHHHH-cCCCeEEEECC
Confidence 77 6999976 555567777777777 89999855 44
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0029 Score=73.18 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccc--cCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCH-----------HHHHHHH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTR--QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSY-----------LDWNKHK 546 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr--~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~-----------eDa~~~l 546 (693)
-+..++|++..+.|+|.|++-.-+. ........+++.|+++++.+ .|||..-|||.|. +++.++|
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l 344 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYF 344 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHH
Confidence 3678999999999999999976554 22233345689999999998 6999999999998 5588888
Q ss_pred hcCCCcCEEEEcHHHhhCC------------CchhHHHhc
Q 005508 547 SDCPELASCMIARGALIKP------------WIFTEIKEQ 574 (693)
Q Consensus 547 ~~~~gaDgVMIGRgaL~nP------------wiF~eIke~ 574 (693)
. .|||-|.|+..|+.+| .+++++.+.
T Consensus 345 ~--~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~ 382 (538)
T PLN02617 345 R--SGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRV 382 (538)
T ss_pred H--cCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHH
Confidence 6 6999999999999975 777777653
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0051 Score=61.70 Aligned_cols=78 Identities=10% Similarity=-0.033 Sum_probs=58.7
Q ss_pred HHHHHHcCCCEEEEeccc---ccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 486 IADIGTWGASAVTVHGRT---RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 486 a~~L~eaG~daItVHgRt---r~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
+....+.|+|+|.++.-. ..+.+.....|+.++++++..+ .+||++-||| +.+++.+++. .|+|+|.+|+++.
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~a~GGI-~~~~i~~~~~--~Ga~gv~~gs~i~ 192 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG-DIPIVAIGGI-TPENAPEVLE--AGADGVAVVSAIT 192 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHH--cCCCEEEEeHHhh
Confidence 344557899999986432 2233333345999999999873 4999999999 7899998776 6999999999987
Q ss_pred hCCCc
Q 005508 563 IKPWI 567 (693)
Q Consensus 563 ~nPwi 567 (693)
..+..
T Consensus 193 ~~~d~ 197 (212)
T PRK00043 193 GAEDP 197 (212)
T ss_pred cCCCH
Confidence 65543
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.023 Score=58.48 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=104.2
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEc--CCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 395 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDIN--MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 395 ~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN--~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
.++..+|.+.+...+.+-.+.+. .+|+|.|-+- =|.=++|++ +=-.+|+++++.++.|+.|=+=
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~-~agad~iH~DVMDghFVPNiT-------------fGp~~v~~l~~~t~~p~DvHLM 69 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALE-AAGADLIHIDVMDGHFVPNIT-------------FGPPVVKALRKITDLPLDVHLM 69 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHH-HcCCCEEEEeccCCCcCCCcc-------------cCHHHHHHHhhcCCCceEEEEe
Confidence 35778999999999999998887 6799876543 343333332 2236788888887889988655
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCEEEEeccc-----------cc----------------------------------Cc
Q 005508 473 TGYFEGKNRIDSLIADIGTWGASAVTVHGRT-----------RQ----------------------------------QR 507 (693)
Q Consensus 473 ~G~~d~~~~~~~la~~L~eaG~daItVHgRt-----------r~----------------------------------q~ 507 (693)
. .+...+++.+.++|++.||+|.=. |+ .+
T Consensus 70 V------~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPG 143 (220)
T COG0036 70 V------ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPG 143 (220)
T ss_pred c------CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCC
Confidence 4 235688899999999999999531 00 11
Q ss_pred cCCC----ccHHHHHHHHHHcCC--CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHH
Q 005508 508 YSKL----ADWDYIYQCARKASD--DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 571 (693)
Q Consensus 508 ytg~----Adw~~I~~i~~~~~~--~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eI 571 (693)
+.|. .-.+-|+++++.... ++-|-.-||| +.+.+..+.. .|||.+.+|+++...+|+-..|
T Consensus 144 fgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~--AGad~~VaGSalF~~~d~~~~i 210 (220)
T COG0036 144 FGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAA--AGADVFVAGSALFGADDYKATI 210 (220)
T ss_pred CcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHH--cCCCEEEEEEEEeCCccHHHHH
Confidence 1111 123445555554431 3557788999 6777777655 6999999999988888844433
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0057 Score=63.11 Aligned_cols=87 Identities=9% Similarity=-0.010 Sum_probs=70.5
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 477 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 477 d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
.+.+.+...|...+..|...|-+- .+. . ..+.++|+++++.+. ++||+.-|||.|++++++++. .|||+|.
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe-~SG--~---~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~--aGAD~VV 202 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLE-YSG--A---YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAE--AGADTIV 202 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeC-CCC--C---cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHH--cCCCEEE
Confidence 355678888888899996666665 221 1 157889999999763 599999999999999999876 5899999
Q ss_pred EcHHHhhCCCchhHHH
Q 005508 557 IARGALIKPWIFTEIK 572 (693)
Q Consensus 557 IGRgaL~nPwiF~eIk 572 (693)
+|..+..+|.++.++.
T Consensus 203 VGsai~~~p~~~~~~v 218 (219)
T cd02812 203 VGNIVEEDPNAALETV 218 (219)
T ss_pred ECchhhCCHHHHHHHh
Confidence 9999999999888764
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0043 Score=63.90 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+..++|+.+.++|++.|+|-.=.... ..+.+++.|+++.+. +||..-|||.|.+|+++++....+||-|.||..
T Consensus 37 dP~~~a~~~~~~g~~~l~ivDLd~~~--~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~ 110 (221)
T TIGR00734 37 SPDDAAKVIEEIGARFIYIADLDRIV--GLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATE 110 (221)
T ss_pred CHHHHHHHHHHcCCCEEEEEEccccc--CCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecCh
Confidence 56889999999999999986544432 345688999999985 489999999999999987542135999999999
Q ss_pred HhhCCCchhHHH
Q 005508 561 ALIKPWIFTEIK 572 (693)
Q Consensus 561 aL~nPwiF~eIk 572 (693)
++.+|.++.++.
T Consensus 111 a~~~p~~l~~~~ 122 (221)
T TIGR00734 111 TLDITELLRECY 122 (221)
T ss_pred hhCCHHHHHHhh
Confidence 999999998875
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.026 Score=59.82 Aligned_cols=153 Identities=17% Similarity=0.222 Sum_probs=94.0
Q ss_pred CCCCcHHHHHHHHHcCCCEEEecccccchhccCChhh----hh-------hhhccCCCCeEEEEec-C---CCHHHHHHH
Q 005508 348 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASE----WA-------LLRRHSSEDLFGVQIC-G---AYPDTLART 412 (693)
Q Consensus 348 t~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e----~~-------ll~~h~~e~p~gvQL~-G---~~pe~~~~A 412 (693)
.++-|.++-+++.+.|+++++|.-..+.. ..|.+.. +. .+.+...-.++++-+- | .+++...+.
T Consensus 20 ~tayD~~sArl~e~aG~d~i~vGds~~~~-~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~ 98 (264)
T PRK00311 20 LTAYDYPFAKLFDEAGVDVILVGDSLGMV-VLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRN 98 (264)
T ss_pred EeCCCHHHHHHHHHcCCCEEEECHHHHHH-HcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHH
Confidence 46679999999999999999875222211 1333221 11 1222222224555552 3 356765555
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEE---------------EEecCCCCC
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT---------------IKVRTGYFE 477 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVt---------------VKiR~G~~d 477 (693)
|.++.+++|+++|.|=-| ..+.+.|++++++ ++||. .|+ .|-.+
T Consensus 99 a~r~~~~aGa~aVkiEdg-------------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i-~grt~ 157 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG-------------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKV-QGRDE 157 (264)
T ss_pred HHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeee-ecCCH
Confidence 544443689999999532 2455666666543 78874 233 22211
Q ss_pred -ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeC
Q 005508 478 -GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 534 (693)
Q Consensus 478 -~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG 534 (693)
....+++-++.++++||++|.+-+ ... +.+++|.+.+ ++|+||-|
T Consensus 158 ~~a~~~i~ra~a~~eAGA~~i~lE~---------v~~-~~~~~i~~~l--~iP~igiG 203 (264)
T PRK00311 158 EAAEKLLEDAKALEEAGAFALVLEC---------VPA-ELAKEITEAL--SIPTIGIG 203 (264)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcC---------CCH-HHHHHHHHhC--CCCEEEec
Confidence 124667778888999999998853 222 6889999998 69999866
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.052 Score=60.67 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=100.9
Q ss_pred hhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc
Q 005508 385 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD 464 (693)
Q Consensus 385 ~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~ 464 (693)
.+.++....+.++.+-|--.++..+. ++.+. .+|+|.|-+|+..+ ...+.+.++++++. +
T Consensus 217 Vk~Lr~~~~~~~I~~DLK~~Di~~~v--v~~~a-~aGAD~vTVH~ea~----------------~~ti~~ai~~akk~-G 276 (391)
T PRK13307 217 ISKIREVRPDAFIVADLKTLDTGNLE--ARMAA-DATADAVVISGLAP----------------ISTIEKAIHEAQKT-G 276 (391)
T ss_pred HHHHHHhCCCCeEEEEecccChhhHH--HHHHH-hcCCCEEEEeccCC----------------HHHHHHHHHHHHHc-C
Confidence 33344433456788999989988775 44455 57999999996322 22355666666553 4
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
+-+.|- =++. .+..+.++.+ ..+++.|.+|...-.+ ....-|+-|+++++... +++|...|||. .+.+..
T Consensus 277 ikvgVD-~lnp----~tp~e~i~~l-~~~vD~Vllht~vdp~--~~~~~~~kI~~ikk~~~-~~~I~VdGGI~-~eti~~ 346 (391)
T PRK13307 277 IYSILD-MLNV----EDPVKLLESL-KVKPDVVELHRGIDEE--GTEHAWGNIKEIKKAGG-KILVAVAGGVR-VENVEE 346 (391)
T ss_pred CEEEEE-EcCC----CCHHHHHHHh-hCCCCEEEEccccCCC--cccchHHHHHHHHHhCC-CCcEEEECCcC-HHHHHH
Confidence 333331 1111 2234556655 6799999999533222 22346888888888643 68999999996 888888
Q ss_pred HHhcCCCcCEEEEcHHHhhCCCch
Q 005508 545 HKSDCPELASCMIARGALIKPWIF 568 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRgaL~nPwiF 568 (693)
++. .|||.+.+||++...++..
T Consensus 347 l~~--aGADivVVGsaIf~a~Dp~ 368 (391)
T PRK13307 347 ALK--AGADILVVGRAITKSKDVR 368 (391)
T ss_pred HHH--cCCCEEEEeHHHhCCCCHH
Confidence 775 6999999999987665543
|
|
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.028 Score=61.90 Aligned_cols=125 Identities=14% Similarity=-0.032 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
+++.+.+.|+.+. ..||+.|-|-.| .+ ..++...+.|++|++.+ +++|.|-..-+|+ ..++
T Consensus 143 ~~~~~~~~a~~~~-~~Gf~~~Kik~~----------~~----~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~--~~~A 205 (368)
T cd03329 143 SPEAYADFAEECK-ALGYRAIKLHPW----------GP----GVVRRDLKACLAVREAVGPDMRLMHDGAHWYS--RADA 205 (368)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEecC----------Cc----hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcC--HHHH
Confidence 7888888888776 569999999421 01 12566788999999887 5788887777774 5789
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCC-HHHHHHHHhcCCCcCEEEE
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS-YLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s-~eDa~~~l~~~~gaDgVMI 557 (693)
.++++.|++.++.+|- |-. .+.+++..+++++.+ ++||.+...+++ ++++..++.. ..+|.|++
T Consensus 206 ~~~~~~l~~~~l~~iE-------eP~-~~~d~~~~~~l~~~~--~ipIa~~E~~~~~~~~~~~~i~~-~a~d~v~~ 270 (368)
T cd03329 206 LRLGRALEELGFFWYE-------DPL-REASISSYRWLAEKL--DIPILGTEHSRGALESRADWVLA-GATDFLRA 270 (368)
T ss_pred HHHHHHhhhcCCCeEe-------CCC-CchhHHHHHHHHhcC--CCCEEccCcccCcHHHHHHHHHh-CCCCEEec
Confidence 9999999999887763 222 234678888999887 699998888999 9999998887 67888875
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.025 Score=59.76 Aligned_cols=127 Identities=11% Similarity=0.041 Sum_probs=87.4
Q ss_pred hCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc--cCEEEEecCCCCCChhHHHHHHHHHHHcCCCE
Q 005508 419 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGYFEGKNRIDSLIADIGTWGASA 496 (693)
Q Consensus 419 ~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~--iPVtVKiR~G~~d~~~~~~~la~~L~eaG~da 496 (693)
..|+|.||+=+ .+|..+-.+.+.+.+-|++|++.+. .||-|=+-++.-.+.+.....+..+.++|+|+
T Consensus 94 ~~GAdEiD~Vi----------nig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADF 163 (257)
T PRK05283 94 AYGADEVDVVF----------PYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADF 163 (257)
T ss_pred HcCCCEEeeec----------cHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCE
Confidence 35999999832 2344455678888888888887763 55655566665444435778888899999999
Q ss_pred EEEecccccCccCCCccHHHHHHHHHHc-----CCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCch
Q 005508 497 VTVHGRTRQQRYSKLADWDYIYQCARKA-----SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 568 (693)
Q Consensus 497 ItVHgRtr~q~ytg~Adw~~I~~i~~~~-----~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF 568 (693)
|--..+ ...+.+..+-|+.+++.+ +.++-|=+.|||.|++++.+++. .|+-.|.+-|+=
T Consensus 164 VKTSTG----f~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~---------ag~~~lg~~~~~ 227 (257)
T PRK05283 164 IKTSTG----KVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLA---------LADEILGADWAD 227 (257)
T ss_pred EEcCCC----CCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHH---------HHHHHhChhhcC
Confidence 954322 223446666666666554 23588999999999999999887 455566655543
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.19 Score=52.63 Aligned_cols=195 Identities=16% Similarity=0.060 Sum_probs=124.2
Q ss_pred CCCCcHHHHHHHHHcCCCEEEecccccchhccCChh----hhhhh----h--ccCCCCeEEEEecC--CCHHHHHHHHHH
Q 005508 348 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS----EWALL----R--RHSSEDLFGVQICG--AYPDTLARTVEL 415 (693)
Q Consensus 348 t~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~----e~~ll----~--~h~~e~p~gvQL~G--~~pe~~~~AA~~ 415 (693)
.++-|...-+++.+.|++.+++--..+.... |.+. .+..+ + ......|+++-+-. .+++.+.+.++.
T Consensus 14 ~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~-G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~ 92 (243)
T cd00377 14 PGAWDALSARLAERAGFKAIYTSGAGVAASL-GLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRE 92 (243)
T ss_pred cCCCCHHHHHHHHHcCCCEEEeccHHHHHhc-CCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHH
Confidence 4666888888998999998876544333222 4432 11111 0 11224577765532 366788888888
Q ss_pred HhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc--cCEEEEecCCC--C--CChhHHHHHHHHH
Q 005508 416 IDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGY--F--EGKNRIDSLIADI 489 (693)
Q Consensus 416 ~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~--iPVtVKiR~G~--~--d~~~~~~~la~~L 489 (693)
+. .+|+++|-|-=+..- +.+ ...|..-+-.++...+.|++++++.+ .++.|=-|+.. . ...+++++-++..
T Consensus 93 ~~-~~G~~gv~iED~~~~-k~~-g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay 169 (243)
T cd00377 93 LE-EAGAAGIHIEDQVGP-KKC-GHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAY 169 (243)
T ss_pred HH-HcCCEEEEEecCCCC-ccc-cCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHH
Confidence 87 589999999544321 111 11233344466777777777776653 24555556311 1 3467899999999
Q ss_pred HHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeC--CC--CCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 490 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG--DI--YSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 490 ~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG--dI--~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
.++|+|+|-+++-. +.++++++.+.. ++||+.+- +- .+.+++.+ -|+..|.+|-.++
T Consensus 170 ~~AGAD~v~v~~~~---------~~~~~~~~~~~~--~~Pl~~~~~~~~~~~~~~~l~~-----lG~~~v~~~~~~~ 230 (243)
T cd00377 170 AEAGADGIFVEGLK---------DPEEIRAFAEAP--DVPLNVNMTPGGNLLTVAELAE-----LGVRRVSYGLALL 230 (243)
T ss_pred HHcCCCEEEeCCCC---------CHHHHHHHHhcC--CCCEEEEecCCCCCCCHHHHHH-----CCCeEEEEChHHH
Confidence 99999999998653 779999999987 58887662 22 45555443 4899999886554
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.055 Score=62.28 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+..+.+..|.++|++.|.|..- +..+. ..|+.|+++++..+ ++||++ |+|.|.+++..+++ .|||+|.+|
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a---~G~s~-~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~--aGad~I~vg 310 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSS---QGNSI-YQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLID--AGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecC---CCCch-HHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHH--cCCCEEEEC
Confidence 4578899999999999998542 11111 23889999999876 688777 99999999999876 699999865
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.061 Score=55.71 Aligned_cols=148 Identities=13% Similarity=0.197 Sum_probs=98.3
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcE--EEEcCCCCCcccccCCccccccCChHHHHHHHHHhccc-cccCEEEEec
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDF--IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT-VDKPITIKVR 472 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~--IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~-v~iPVtVKiR 472 (693)
.+..+|.+.+...+.+-.+.+. ..|+|. |||-=|.=+++. .+| -++|+++++. +++|+.|=+=
T Consensus 5 ~i~pSil~ad~~~l~~~i~~l~-~~g~d~lHiDimDG~FVPN~---tfg----------~~~i~~lr~~~~~~~~dvHLM 70 (223)
T PRK08745 5 AIAPSILSADFARLGEEVDNVL-KAGADWVHFDVMDNHYVPNL---TIG----------PMVCQALRKHGITAPIDVHLM 70 (223)
T ss_pred EEEeehhhcCHHHHHHHHHHHH-HcCCCEEEEecccCccCCCc---ccC----------HHHHHHHHhhCCCCCEEEEec
Confidence 3678889999999999999987 578886 455445544443 222 3578888877 5888877554
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCEEEEecccc-----------c----------------------------------Cc
Q 005508 473 TGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-----------Q----------------------------------QR 507 (693)
Q Consensus 473 ~G~~d~~~~~~~la~~L~eaG~daItVHgRtr-----------~----------------------------------q~ 507 (693)
. .+...+++.+.++|++.|++|.-.. + .+
T Consensus 71 v------~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PG 144 (223)
T PRK08745 71 V------EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPG 144 (223)
T ss_pred c------CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCC
Confidence 4 1245688889999999999996420 0 01
Q ss_pred cCCC----ccHHHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 508 YSKL----ADWDYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 508 ytg~----Adw~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
+.|. .-++-|+++++..+ .++.|-.-||| +.+.+..+.+ .|||.+.+|+++...+.
T Consensus 145 f~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~--aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 145 FGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAA--AGADTFVAGSAIFNAPD 207 (223)
T ss_pred CCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHH--cCCCEEEEChhhhCCCC
Confidence 1111 11233444444321 13668899999 5788887665 69999999999765554
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.032 Score=57.35 Aligned_cols=145 Identities=10% Similarity=0.067 Sum_probs=92.6
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCc-----ccccC-------CccccccCChHHHHHHH-------
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPID-----IVVNK-------GAGSCLLTKPMRMKGII------- 456 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~-----~v~k~-------G~GsaLl~rp~~l~eIV------- 456 (693)
+++.=|.+.+++.....++.+. +.|+..|||-+--|.. .+.+. -.|++-.-+++.+.+.+
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 4555577889999999999887 6799999997755431 11110 02222233444443333
Q ss_pred ----------HHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCC
Q 005508 457 ----------EATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD 526 (693)
Q Consensus 457 ----------~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~ 526 (693)
+..++ .++|+.- |.. +..++. ...++|++.|-++.. .....+|++.++..++
T Consensus 93 vsP~~~~~v~~~~~~-~~i~~iP----G~~----T~~E~~-~A~~~Gad~vklFPa-------~~~G~~~ik~l~~~~p- 154 (213)
T PRK06552 93 VSPSFNRETAKICNL-YQIPYLP----GCM----TVTEIV-TALEAGSEIVKLFPG-------STLGPSFIKAIKGPLP- 154 (213)
T ss_pred ECCCCCHHHHHHHHH-cCCCEEC----CcC----CHHHHH-HHHHcCCCEEEECCc-------ccCCHHHHHHHhhhCC-
Confidence 22221 1233221 211 122332 335799999999652 1233678999999886
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 527 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
.+|++..||| +.+.+.+++. .|+++|.+|..++
T Consensus 155 ~ip~~atGGI-~~~N~~~~l~--aGa~~vavgs~l~ 187 (213)
T PRK06552 155 QVNVMVTGGV-NLDNVKDWFA--AGADAVGIGGELN 187 (213)
T ss_pred CCEEEEECCC-CHHHHHHHHH--CCCcEEEEchHHh
Confidence 6999999999 5899999887 6999999998885
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0045 Score=63.97 Aligned_cols=134 Identities=14% Similarity=0.031 Sum_probs=82.0
Q ss_pred HHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc---ccCEEEEecCCCCC------ChhHH
Q 005508 412 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV---DKPITIKVRTGYFE------GKNRI 482 (693)
Q Consensus 412 AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v---~iPVtVKiR~G~~d------~~~~~ 482 (693)
.++.+. ..|+|+||+-+ -+|...-.+.+.+.+.++.|++.+ ++||.+=.-+ ..+ ..+.+
T Consensus 81 ~ve~A~-~~GAd~vd~vi----------~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~I 148 (236)
T PF01791_consen 81 EVEEAI-RLGADEVDVVI----------NYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDLI 148 (236)
T ss_dssp HHHHHH-HTT-SEEEEEE----------EHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHHH
T ss_pred HHHHHH-HcCCceeeeec----------cccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHHH
Confidence 333444 46999999953 111111223444445555554444 7787776322 111 01235
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCce----EEEeCCC------CCHHHHHHHHhcCCCc
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ----VLGNGDI------YSYLDWNKHKSDCPEL 552 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IP----VIgNGdI------~s~eDa~~~l~~~~ga 552 (693)
...++.+.+.|+|.|-..... . ......+...+.++.+.. ++| |.+.||| .+.+++.++++ .||
T Consensus 149 ~~a~ria~e~GaD~vKt~tg~-~-~~~t~~~~~~~~~~~~~~--~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~--aGa 222 (236)
T PF01791_consen 149 ARAARIAAELGADFVKTSTGK-P-VGATPEDVELMRKAVEAA--PVPGKVGVKASGGIDAEDFLRTLEDALEFIE--AGA 222 (236)
T ss_dssp HHHHHHHHHTT-SEEEEE-SS-S-SCSHHHHHHHHHHHHHTH--SSTTTSEEEEESSSSHHHHHHSHHHHHHHHH--TTH
T ss_pred HHHHHHHHHhCCCEEEecCCc-c-ccccHHHHHHHHHHHHhc--CCCcceEEEEeCCCChHHHHHHHHHHHHHHH--cCC
Confidence 677777899999999776441 1 222223556666666666 478 9999999 99999999887 589
Q ss_pred --CEEEEcHHHhh
Q 005508 553 --ASCMIARGALI 563 (693)
Q Consensus 553 --DgVMIGRgaL~ 563 (693)
-|++.||.++.
T Consensus 223 ~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 223 DRIGTSSGRNIWQ 235 (236)
T ss_dssp SEEEEEEHHHHHT
T ss_pred hhHHHHHHHHHHc
Confidence 89999998764
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.028 Score=56.52 Aligned_cols=146 Identities=16% Similarity=0.110 Sum_probs=88.4
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCc-----------ccccCCccccccCChHHHHHHHHHh-----
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPID-----------IVVNKGAGSCLLTKPMRMKGIIEAT----- 459 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~-----------~v~k~G~GsaLl~rp~~l~eIV~av----- 459 (693)
++..=|.+.+++.....++.+. ..|++.|+|-+=-|.. .....|+|.-|.. +.+...+++=
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~--d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTL--EDLEEAIAAGAQFCF 89 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcH--HHHHHHHHcCCCEEE
Confidence 3444477778888888888776 5688888885422210 0122333332222 3322222211
Q ss_pred -----------ccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCc
Q 005508 460 -----------SGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL 528 (693)
Q Consensus 460 -----------~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~I 528 (693)
+...++++ -+|.. +..+ +....+.|+|+|-++.-. .....++++.++..++ ++
T Consensus 90 ~p~~~~~~~~~~~~~~~~~----i~G~~----t~~e-~~~A~~~Gadyv~~Fpt~------~~~G~~~l~~~~~~~~-~i 153 (187)
T PRK07455 90 TPHVDPELIEAAVAQDIPI----IPGAL----TPTE-IVTAWQAGASCVKVFPVQ------AVGGADYIKSLQGPLG-HI 153 (187)
T ss_pred CCCCCHHHHHHHHHcCCCE----EcCcC----CHHH-HHHHHHCCCCEEEECcCC------cccCHHHHHHHHhhCC-CC
Confidence 11112222 13421 2223 334556899999985421 1224789999999885 69
Q ss_pred eEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 529 QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 529 PVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
||++.||| +++++.++++ .|+++|.++++++.
T Consensus 154 pvvaiGGI-~~~n~~~~l~--aGa~~vav~s~i~~ 185 (187)
T PRK07455 154 PLIPTGGV-TLENAQAFIQ--AGAIAVGLSGQLFP 185 (187)
T ss_pred cEEEeCCC-CHHHHHHHHH--CCCeEEEEehhccc
Confidence 99999999 8899999887 69999999988754
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.024 Score=58.09 Aligned_cols=139 Identities=15% Similarity=0.171 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCcEEEE-cCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChh
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDI-NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKN 480 (693)
Q Consensus 403 G~~pe~~~~AA~~~~~~aG~D~IDL-N~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~ 480 (693)
+-+|+.|..|. .+|+|.||| |+-|- +.+|. .=..+.+.++.+..|+-+ ++|++|-+---. ..+
T Consensus 68 aVep~~f~~aV-----~AGAdliEIGNfDsF----Y~qGr----~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL--~ld 132 (242)
T PF04481_consen 68 AVEPELFVAAV-----KAGADLIEIGNFDSF----YAQGR----RFSAEEVLALTRETRSLLPDITLSVTVPHIL--PLD 132 (242)
T ss_pred cCCHHHHHHHH-----HhCCCEEEecchHHH----HhcCC----eecHHHHHHHHHHHHHhCCCCceEEecCccc--cHH
Confidence 44677777665 358888888 44332 22331 124567888888888877 888888554321 235
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCC---------ccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCC
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKL---------ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 551 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~---------Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g 551 (693)
+-.+|+..|++.|+|.|---|.+...-.... .-+.....+.+.+ ++||+..-||.+..-=.. +. .|
T Consensus 133 ~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~vT~PmA-ia--aG 207 (242)
T PF04481_consen 133 QQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSAVTAPMA-IA--AG 207 (242)
T ss_pred HHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcchhhHHHH-HH--cC
Confidence 6789999999999999998888754433211 1244456677777 799999999977655444 44 69
Q ss_pred cCEEEEcHHH
Q 005508 552 LASCMIARGA 561 (693)
Q Consensus 552 aDgVMIGRga 561 (693)
|.||-||.+.
T Consensus 208 AsGVGVGSav 217 (242)
T PF04481_consen 208 ASGVGVGSAV 217 (242)
T ss_pred CcccchhHHh
Confidence 9999999764
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >smart00356 ZnF_C3H1 zinc finger | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0011 Score=45.36 Aligned_cols=24 Identities=46% Similarity=1.176 Sum_probs=18.1
Q ss_pred ccCChhhhccCCCCCCCCCCCCCCCCCh
Q 005508 101 SHLCPEVAKSGDVSSCPYKDKCRFSHDL 128 (693)
Q Consensus 101 ~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~ 128 (693)
..+|+.|.. | .|.+|++|+|+|+.
T Consensus 4 ~~~C~~~~~-g---~C~~g~~C~~~H~~ 27 (27)
T smart00356 4 TELCKFFKR-G---YCPYGDRCKFAHPL 27 (27)
T ss_pred CCcCcCccC-C---CCCCCCCcCCCCcC
Confidence 457888844 4 68888888888873
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.012 Score=58.58 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=57.4
Q ss_pred HHHHcCCCEEEEec----ccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 488 DIGTWGASAVTVHG----RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 488 ~L~eaG~daItVHg----Rtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
.+.+.|+|+|.+.. .+.. .+..+..|+.+.++++..+ ++||++-||| +.+++.+++. .|+|+|+++++++.
T Consensus 111 ~a~~~g~dyi~~~~v~~t~~k~-~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~--~G~~gva~~~~i~~ 185 (196)
T TIGR00693 111 EAEAEGADYIGFGPIFPTPTKK-DPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLA--AGADGVAVVSAIMQ 185 (196)
T ss_pred HHhHcCCCEEEECCccCCCCCC-CCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHH--cCCCEEEEhHHhhC
Confidence 46678999998633 2222 2334457999999988764 5999999999 6899998775 69999999999986
Q ss_pred CCCch
Q 005508 564 KPWIF 568 (693)
Q Consensus 564 nPwiF 568 (693)
.....
T Consensus 186 ~~dp~ 190 (196)
T TIGR00693 186 AADPK 190 (196)
T ss_pred CCCHH
Confidence 55433
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.019 Score=60.08 Aligned_cols=154 Identities=12% Similarity=0.150 Sum_probs=93.6
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHc
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 492 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ea 492 (693)
|++++ .+|||.|=+--.+ .... .|+-...+-..+.+...++.|...+.+||++-+..|+. +...+.+.++++.++
T Consensus 22 A~~~e-~~G~~ai~~s~~~-~~~s--~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g-~~~~~~~~v~~~~~~ 96 (243)
T cd00377 22 ARLAE-RAGFKAIYTSGAG-VAAS--LGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYG-NALNVARTVRELEEA 96 (243)
T ss_pred HHHHH-HcCCCEEEeccHH-HHHh--cCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCC-CHHHHHHHHHHHHHc
Confidence 44444 6799998884221 1111 13333334456778888888888889999999999976 447788889999999
Q ss_pred CCCEEEEecccccCc--------cCCCc-cHHHHHHHHHHcCC--CceEEEeCCC-----CCHHHHHHHH---hcCCCcC
Q 005508 493 GASAVTVHGRTRQQR--------YSKLA-DWDYIYQCARKASD--DLQVLGNGDI-----YSYLDWNKHK---SDCPELA 553 (693)
Q Consensus 493 G~daItVHgRtr~q~--------ytg~A-dw~~I~~i~~~~~~--~IPVIgNGdI-----~s~eDa~~~l---~~~~gaD 553 (693)
|+++|.|-+.....+ .-... ..+.|+.+++.... +++||+-=|. .+.+++.+.. .+ .|||
T Consensus 97 G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~-AGAD 175 (243)
T cd00377 97 GAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAE-AGAD 175 (243)
T ss_pred CCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHH-cCCC
Confidence 999999954432111 11111 12334444444432 5888887444 3445544322 23 6999
Q ss_pred EEEEcHHHhhCCCchhHHHhc
Q 005508 554 SCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 554 gVMIGRgaL~nPwiF~eIke~ 574 (693)
+|+|= +. .++.-+.++.+.
T Consensus 176 ~v~v~-~~-~~~~~~~~~~~~ 194 (243)
T cd00377 176 GIFVE-GL-KDPEEIRAFAEA 194 (243)
T ss_pred EEEeC-CC-CCHHHHHHHHhc
Confidence 99984 22 255555555543
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.037 Score=61.28 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=53.6
Q ss_pred HHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 485 LIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 485 la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
-...|.++|++.|.|. ..|+++- ...+.|+-|++..| .+.||| |++.+.+.++.++. .|||++=||-|
T Consensus 255 rl~ll~~aGvdvviLD---SSqGnS~-~qiemik~iK~~yP-~l~Via-GNVVT~~qa~nLI~--aGaDgLrVGMG 322 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILD---SSQGNSI-YQLEMIKYIKETYP-DLQIIA-GNVVTKEQAANLIA--AGADGLRVGMG 322 (503)
T ss_pred HHHHhhhcCCcEEEEe---cCCCcch-hHHHHHHHHHhhCC-Cceeec-cceeeHHHHHHHHH--ccCceeEeccc
Confidence 3456789999999997 3455543 46789999999998 688776 88889999999887 69999866644
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.055 Score=57.93 Aligned_cols=79 Identities=13% Similarity=0.073 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCcc--CCCccHHHHHHHHHHcCCCceEEEeC--CCCCHHHHHHHHhcCCCcCEEEE
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRY--SKLADWDYIYQCARKASDDLQVLGNG--DIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 482 ~~~la~~L~eaG~daItVHgRtr~q~y--tg~Adw~~I~~i~~~~~~~IPVIgNG--dI~s~eDa~~~l~~~~gaDgVMI 557 (693)
..+....+++.|+|+|.+.-++-...| ....+++.++++++.+ ++||++-| || +.+++.+++. .|+++|-|
T Consensus 155 ~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI-~~e~~~~~i~--~G~~kinv 229 (281)
T PRK06806 155 TTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV--HIPLVLHGGSGI-SPEDFKKCIQ--HGIRKINV 229 (281)
T ss_pred HHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc--CCCEEEECCCCC-CHHHHHHHHH--cCCcEEEE
Confidence 334444455689999988333322233 2346899999999998 69999999 99 6788888776 69999999
Q ss_pred cHHHhhCC
Q 005508 558 ARGALIKP 565 (693)
Q Consensus 558 GRgaL~nP 565 (693)
.+++..+|
T Consensus 230 ~T~i~~a~ 237 (281)
T PRK06806 230 ATATFNSV 237 (281)
T ss_pred hHHHHHHH
Confidence 99999853
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0083 Score=75.45 Aligned_cols=109 Identities=12% Similarity=0.176 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCc--------cCCCccHHH-H
Q 005508 448 KPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--------YSKLADWDY-I 517 (693)
Q Consensus 448 rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~--------ytg~Adw~~-I 517 (693)
.++-+.++|..++... +.||+||+-.+.. .-.++.-+.++|+|.|+|.|...... +.| .-|++ +
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~-----vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~G-lP~e~gL 1052 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPG-----VGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAG-SPWELGL 1052 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCC-----ccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCC-ccHHHHH
Confidence 4567888888998887 7899999986421 12355556789999999998643211 222 23554 4
Q ss_pred HHHHHHc-----CCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC
Q 005508 518 YQCARKA-----SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 564 (693)
Q Consensus 518 ~~i~~~~-----~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 564 (693)
.++.+.+ ...|.|++.|+|.++.|+..++. -|||.|.+||++|.=
T Consensus 1053 ~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~a--LGAd~~~~gt~~lia 1102 (1485)
T PRK11750 1053 AETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAI--LGAESFGFGTGPMVA 1102 (1485)
T ss_pred HHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHH--cCCcccccchHHHHH
Confidence 4444432 24699999999999999999887 599999999999964
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.33 Score=50.55 Aligned_cols=206 Identities=14% Similarity=0.107 Sum_probs=122.0
Q ss_pred ccccCCccccCcEEEccCCCCCc-HHHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEec-CCCHH
Q 005508 330 SREKKLIDFREKLYLAPLTTVGN-LPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQIC-GAYPD 407 (693)
Q Consensus 330 p~ek~~l~lknriiLAPMt~v~d-lpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~-G~~pe 407 (693)
+.++.+-.|..|+++- -..+.+ .-.....+..|+.++---|=-+.-.-.++..-|.+++. .+-.+-..-+ ..+.+
T Consensus 7 ~l~i~g~~f~SRLllG-Tgky~s~~~~~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l~~--~~~~~LPNTaGc~tae 83 (262)
T COG2022 7 MLTIAGKTFDSRLLLG-TGKYPSPAVLAEAVRASGSEIVTVALRRVNATRPGGDGILDLLIP--LGVTLLPNTAGCRTAE 83 (262)
T ss_pred ceeecCeeeeeeEEEe-cCCCCCHHHHHHHHHhcCCceEEEEEEeecccCCCcchHHHHhhh--cCcEeCCCccccCCHH
Confidence 3567888899999874 223443 33444445568887632221111111233444554422 1111111222 34689
Q ss_pred HHHHHHHHHhhhCCCcEEEEcC-CCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHH
Q 005508 408 TLARTVELIDQQCTVDFIDINM-GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLI 486 (693)
Q Consensus 408 ~~~~AA~~~~~~aG~D~IDLN~-GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la 486 (693)
+.++.|+++.+-.+-|+|-|-. |++- .|+-|+-.+ +++...-++--++|=-=+ .++ .-++
T Consensus 84 EAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~et---l~Aae~Lv~eGF~VlPY~--~dD----~v~a 144 (262)
T COG2022 84 EAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPIET---LKAAEQLVKEGFVVLPYT--TDD----PVLA 144 (262)
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCc----------ccCCChHHH---HHHHHHHHhCCCEEeecc--CCC----HHHH
Confidence 9999999998655778877752 3332 355555433 333333232223331111 121 4689
Q ss_pred HHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 487 ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 487 ~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
++|++.||.+|-=-+-. -+.-.|..+-..+..+.+.. ++|||.--||-++.|+-..++ -|||+|++-.+.-
T Consensus 145 rrLee~GcaavMPl~aP-IGSg~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aME--lG~DaVL~NTAiA 215 (262)
T COG2022 145 RRLEEAGCAAVMPLGAP-IGSGLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAME--LGADAVLLNTAIA 215 (262)
T ss_pred HHHHhcCceEecccccc-ccCCcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHh--cccceeehhhHhh
Confidence 99999999998533221 11122455667788888888 799999999999999999887 5999999887654
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.12 Score=53.78 Aligned_cols=181 Identities=13% Similarity=0.088 Sum_probs=115.7
Q ss_pred HcCCCEEEecccccchhccCChh-hhhhh----h--ccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCC
Q 005508 361 VLGADVTCGEMAMCTNLLQGQAS-EWALL----R--RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPI 433 (693)
Q Consensus 361 ~~Gadl~~TEM~~a~~ll~g~~~-e~~ll----~--~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~ 433 (693)
+.|+|-++-|-....|+...-.. +.+.+ + ...-..|+||.+.-|++-.... ++. ..|.|||-+|.-|=.
T Consensus 45 egG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA~~---IA~-a~gA~FIRVN~~tg~ 120 (263)
T COG0434 45 EGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAALA---IAY-AVGADFIRVNVLTGA 120 (263)
T ss_pred hCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeeccccHHHHH---HHH-hcCCCEEEEEeeece
Confidence 36999999999988888763322 22211 1 1234579999998888643322 333 468999999975533
Q ss_pred cccccCCccccccCChHHHHHHHHHhcccccc--CEEEEecCCCCCChhHHHHHHH-HHHHcCCCEEEEecccccCccCC
Q 005508 434 DIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK--PITIKVRTGYFEGKNRIDSLIA-DIGTWGASAVTVHGRTRQQRYSK 510 (693)
Q Consensus 434 ~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~i--PVtVKiR~G~~d~~~~~~~la~-~L~eaG~daItVHgRtr~q~ytg 510 (693)
- +...| -|.-+...+.+....+...+.+ -|-||-..-..+ ....+.++ .++..++|+|++.|... ..
T Consensus 121 ~-~tdqG---iieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~--~~~~~~v~dtver~~aDaVI~tG~~T----G~ 190 (263)
T COG0434 121 Y-ATDQG---IIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGN--RSLEEAVKDTVERGLADAVIVTGSRT----GS 190 (263)
T ss_pred E-ecccc---eecchHHHHHHHHHhccCCcEEEeecchhcccccCC--cCHHHHHHHHHHccCCCEEEEecccC----CC
Confidence 1 11222 2334444555555555432221 234444332211 23334444 47888999999998642 35
Q ss_pred CccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHH
Q 005508 511 LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 511 ~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 561 (693)
++|.+.+..+++.+ ++||+.+-|+ +++.+.+++.- |||+.+|..+
T Consensus 191 ~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~---adG~IvgT~l 235 (263)
T COG0434 191 PPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI---ADGVIVGTSL 235 (263)
T ss_pred CCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH---cCceEEEEEE
Confidence 67999999999998 6999988888 78889888864 8999999654
|
|
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.048 Score=59.83 Aligned_cols=146 Identities=8% Similarity=-0.095 Sum_probs=103.1
Q ss_pred hhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc
Q 005508 384 EWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 463 (693)
Q Consensus 384 e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v 463 (693)
-|.++-.....-+.-..+...+++.+.+.|+.+. +.||..|-|-.|- .+++.-.+.|++|++.+
T Consensus 120 v~~LlGg~~~~v~~y~s~~~~~~~~~~~~a~~~~-~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~ 183 (355)
T cd03321 120 LAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAA-EEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAV 183 (355)
T ss_pred HHHHhCCCCCCeeEEEeCCCChHHHHHHHHHHHH-HhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhh
Confidence 3455532222334444454456777766666554 3488888775431 24555678899999887
Q ss_pred --ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHH
Q 005508 464 --DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD 541 (693)
Q Consensus 464 --~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eD 541 (693)
++.|.|-.--+|+ ..++..+++.|++.++.+|- |-. .+-||+-.+++++.. ++||.+...++++.+
T Consensus 184 g~~~~l~vDaN~~~~--~~~A~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~l~~~~--~ipia~~E~~~~~~~ 251 (355)
T cd03321 184 GDGVGLMVDYNQSLT--VPEAIERGQALDQEGLTWIE-------EPT-LQHDYEGHARIASAL--RTPVQMGENWLGPEE 251 (355)
T ss_pred CCCCEEEEeCCCCcC--HHHHHHHHHHHHcCCCCEEE-------CCC-CCcCHHHHHHHHHhc--CCCEEEcCCCcCHHH
Confidence 4667776666664 46899999999999988884 222 345888899999988 699999999999999
Q ss_pred HHHHHhcCCCcCEEEEc
Q 005508 542 WNKHKSDCPELASCMIA 558 (693)
Q Consensus 542 a~~~l~~~~gaDgVMIG 558 (693)
+..++.. ..+|.|++-
T Consensus 252 ~~~~i~~-~~~d~i~~~ 267 (355)
T cd03321 252 MFKALSA-GACDLVMPD 267 (355)
T ss_pred HHHHHHh-CCCCeEecC
Confidence 9999886 678888753
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.046 Score=57.72 Aligned_cols=135 Identities=21% Similarity=0.124 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
|.+.+.+-++.+. ..|+++|=+|. ..|-...-..+.-.++++.+++.+ .+||.+-+.. .+..++
T Consensus 16 D~~~~~~~i~~l~-~~Gv~gi~~~G----------stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~---~~~~~~ 81 (281)
T cd00408 16 DLDALRRLVEFLI-EAGVDGLVVLG----------TTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA---NSTREA 81 (281)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC---ccHHHH
Confidence 6788888888887 46999998874 233333344455556666665555 5788887654 245679
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
.++++.+++.|+++|.+..-.-.. ++...-++|+..+.+.+ ++||| ..|--.+++.+.++.. ...+-|+=
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~-~~~~~~~~~~~~ia~~~--~~pi~iYn~P~~tg~~l~~~~~~~L~~-~~~v~giK 157 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNK-PSQEGIVAHFKAVADAS--DLPVILYNIPGRTGVDLSPETIARLAE-HPNIVGIK 157 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCC-CCHHHHHHHHHHHHhcC--CCCEEEEECccccCCCCCHHHHHHHhc-CCCEEEEE
Confidence 999999999999999997543111 11122467888888876 68887 4577788888888664 35555553
Q ss_pred E
Q 005508 557 I 557 (693)
Q Consensus 557 I 557 (693)
.
T Consensus 158 ~ 158 (281)
T cd00408 158 D 158 (281)
T ss_pred e
Confidence 3
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.076 Score=57.86 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=97.4
Q ss_pred CCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhh----hh-------hhccCCCCeEEE-Ee----cCCCHHHHH
Q 005508 347 LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEW----AL-------LRRHSSEDLFGV-QI----CGAYPDTLA 410 (693)
Q Consensus 347 Mt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~----~l-------l~~h~~e~p~gv-QL----~G~~pe~~~ 410 (693)
|.|.-|.++-+++.+.|+|++.+.=.... .+.|..++. .. +.+. ...+|+| -| ++.++++..
T Consensus 39 mlTAyD~~sA~i~d~aGvD~ILVGDSlgm-v~lG~~~T~~Vtld~mi~H~~aV~Rg-a~~a~vVaDmPfgSY~~s~e~av 116 (332)
T PLN02424 39 MVTAYDYPSAVHVDSAGIDVCLVGDSAAM-VVHGHDTTLPITLDEMLVHCRAVARG-ANRPLLVGDLPFGSYESSTDQAV 116 (332)
T ss_pred EEecCCHHHHHHHHHcCCCEEEECCcHHH-HhcCCCCCCCcCHHHHHHHHHHHhcc-CCCCEEEeCCCCCCCCCCHHHHH
Confidence 45777999999999999998865432222 123443321 11 1222 2344443 33 234788888
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC---------CCCC---C
Q 005508 411 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT---------GYFE---G 478 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~---------G~~d---~ 478 (693)
+.|.++..++|+++|.|-.|. ....++|+++. ..+|||.-=|.+ |+.- +
T Consensus 117 ~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~ 177 (332)
T PLN02424 117 ESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRT 177 (332)
T ss_pred HHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCC
Confidence 888777547899999995432 22346666665 458888732221 2211 1
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeC
Q 005508 479 ---KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 534 (693)
Q Consensus 479 ---~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG 534 (693)
...+++-|+.|+++||.+|.|-+- -.+.+++|.+.+ +||+||-|
T Consensus 178 ~~~a~~li~dA~ale~AGAf~ivLE~V----------p~~la~~It~~l--~IPtIGIG 224 (332)
T PLN02424 178 AESAVKVVETALALQEAGCFAVVLECV----------PAPVAAAITSAL--QIPTIGIG 224 (332)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEcCC----------cHHHHHHHHHhC--CCCEEeec
Confidence 225667778899999999998542 224789999999 79999876
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.077 Score=56.06 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=94.8
Q ss_pred CCCCcHHHHHHHHHcCCCEEEecccccchhccCChhh----hhh-------hhccCCCCe-EEEEec-C---CCHHHHHH
Q 005508 348 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASE----WAL-------LRRHSSEDL-FGVQIC-G---AYPDTLAR 411 (693)
Q Consensus 348 t~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e----~~l-------l~~h~~e~p-~gvQL~-G---~~pe~~~~ 411 (693)
.++-|.++-+++.+.|+++++|.-..+.. ..|.+.. +.. +.+ ....| +++-+- | +++++..+
T Consensus 17 ~~ayD~~sA~l~e~aG~d~i~vGds~~~~-~lG~pDt~~vtl~em~~~~~~V~r-~~~~p~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 17 LTAYDYPTAKLADEAGVDVILVGDSLGMV-VLGYDSTLPVTLDEMIYHTRAVRR-GAPRALVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred EeCCCHHHHHHHHHcCCCEEEECHHHHHH-HcCCCCCCCcCHHHHHHHHHHHHh-cCCCCeEEEeCCCCcccCCHHHHHH
Confidence 36669999999999999999876322221 1333221 111 112 22445 555552 3 46888777
Q ss_pred HHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC--------------CCCC
Q 005508 412 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT--------------GYFE 477 (693)
Q Consensus 412 AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~--------------G~~d 477 (693)
.+.++.+++|+++|.|=-| ..+.+.|+++++ .++||.-=|.+ |-.+
T Consensus 95 ~a~r~~~~aGa~aVkiEd~-------------------~~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~ 154 (254)
T cd06557 95 NAARLMKEAGADAVKLEGG-------------------AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTE 154 (254)
T ss_pred HHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCH
Confidence 7766664699999999532 245555666653 26776521111 1111
Q ss_pred -ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeC
Q 005508 478 -GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 534 (693)
Q Consensus 478 -~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG 534 (693)
....+++-++.++++|+++|.+-+ .. -+.+++|.+.+ ++|+||-|
T Consensus 155 ~~a~~~i~ra~a~~~AGA~~i~lE~---------v~-~~~~~~i~~~v--~iP~igiG 200 (254)
T cd06557 155 EEAERLLEDALALEEAGAFALVLEC---------VP-AELAKEITEAL--SIPTIGIG 200 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcC---------CC-HHHHHHHHHhC--CCCEEEec
Confidence 124566777788999999998853 22 26889999999 69999876
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.064 Score=55.10 Aligned_cols=130 Identities=12% Similarity=0.023 Sum_probs=77.1
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHc
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 492 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ea 492 (693)
++.+. ++|+|+|=|... - ++ .....+.+.++..++ .++.+.+ -.+ + .+-++.+.+.
T Consensus 78 ~~~l~-~~G~~~vii~~s----e-r~--------~~~~e~~~~v~~a~~-~Gl~~I~--~v~---~----~~~~~~~~~~ 133 (223)
T PRK04302 78 PEAVK-DAGAVGTLINHS----E-RR--------LTLADIEAVVERAKK-LGLESVV--CVN---N----PETSAAAAAL 133 (223)
T ss_pred HHHHH-HcCCCEEEEecc----c-cc--------cCHHHHHHHHHHHHH-CCCeEEE--EcC---C----HHHHHHHhcC
Confidence 55555 589999977532 0 00 012235566666554 3554334 222 1 1233456778
Q ss_pred CCCEEEEecccccC------ccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 493 GASAVTVHGRTRQQ------RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 493 G~daItVHgRtr~q------~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
|.+.|-+-+|...+ .+.....-++++.+++... ++||+.-|+|.+.+++..++. .|+|||.||++++.-+.
T Consensus 134 ~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~-~~pvi~GggI~~~e~~~~~~~--~gadGvlVGsa~l~~~~ 210 (223)
T PRK04302 134 GPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNP-DVKVLCGAGISTGEDVKAALE--LGADGVLLASGVVKAKD 210 (223)
T ss_pred CCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccC-CCEEEEECCCCCHHHHHHHHc--CCCCEEEEehHHhCCcC
Confidence 88988876552111 1111111233445555433 689999999999999999775 69999999999997665
Q ss_pred chh
Q 005508 567 IFT 569 (693)
Q Consensus 567 iF~ 569 (693)
+-.
T Consensus 211 ~~~ 213 (223)
T PRK04302 211 PEA 213 (223)
T ss_pred HHH
Confidence 433
|
|
| >COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.002 Score=68.20 Aligned_cols=62 Identities=31% Similarity=0.450 Sum_probs=49.4
Q ss_pred hccccCChhhhccCCCCCCCCCCCCCCCCChhhhhh--cCC--CCCCCCCCCcCcccccCCCCCccccc
Q 005508 98 KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKA--QKP--DDLEGECPFLSSEGPCPYGLACRFSG 162 (693)
Q Consensus 98 ~~~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~~yl~--~K~--~di~~~Cp~f~~~G~Cp~G~~CRF~~ 162 (693)
...++-|..+-..| .|+||-+|-|.|.-.+-.+ ..+ ..+.+.|.-+..+|+||+|..|+|..
T Consensus 271 ~frTePcinwe~sG---yc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~ 336 (351)
T COG5063 271 NFRTEPCINWEKSG---YCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSF 336 (351)
T ss_pred ccccCCccchhhcc---cCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhcc
Confidence 35678899998888 8999999999995443332 223 44578999999999999999999864
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0083 Score=62.43 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=58.9
Q ss_pred HcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCc-eEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC-ch
Q 005508 491 TWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL-QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW-IF 568 (693)
Q Consensus 491 eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~I-PVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw-iF 568 (693)
-.|...+-+-..+ ++..+.+.++++++++.+ ++ ||+..|||.+.+++.+++. .|||+|.+|..+..||. .+
T Consensus 152 ~~g~~~vYle~gs---~~g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~--~GAD~VVVGSai~~d~~~~~ 224 (232)
T PRK04169 152 YLGMPIVYLEYGG---GAGDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMA--AGADTIVVGNIIEEDPKKTV 224 (232)
T ss_pred HcCCCeEEEECCC---CCCCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHH--hCCCEEEEChHHhhCHHHHH
Confidence 3565655555433 344567899999999988 57 9999999999999999776 58999999999999988 44
Q ss_pred hHHH
Q 005508 569 TEIK 572 (693)
Q Consensus 569 ~eIk 572 (693)
++++
T Consensus 225 ~~~~ 228 (232)
T PRK04169 225 KAIK 228 (232)
T ss_pred HHHH
Confidence 4443
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.1 Score=55.44 Aligned_cols=154 Identities=14% Similarity=0.197 Sum_probs=93.2
Q ss_pred CCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhh----hh-------hhccCCCCeEEE-Ee--cCC-CHHHHHH
Q 005508 347 LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEW----AL-------LRRHSSEDLFGV-QI--CGA-YPDTLAR 411 (693)
Q Consensus 347 Mt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~----~l-------l~~h~~e~p~gv-QL--~G~-~pe~~~~ 411 (693)
|.|.=|.++-+++.+.|+|++.+.-..... ..|..++. .. +.+.. ..+++| -+ .+. ++++..+
T Consensus 19 m~tayD~~sA~i~~~aG~d~ilvGdSlgm~-~lG~~~t~~vtldem~~h~~aV~rg~-~~~~vv~DmPf~sy~~~e~a~~ 96 (263)
T TIGR00222 19 AITAYDYSFAKLFADAGVDVILVGDSLGMV-VLGHDSTLPVTVADMIYHTAAVKRGA-PNCLIVTDLPFMSYATPEQALK 96 (263)
T ss_pred EEeccCHHHHHHHHHcCCCEEEECccHhHH-hcCCCCCCCcCHHHHHHHHHHHHhhC-CCceEEeCCCcCCCCCHHHHHH
Confidence 346679999999999999998766332222 23333221 11 12222 223332 22 121 4877777
Q ss_pred HHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEE---------EEecCCCCC---C-
Q 005508 412 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT---------IKVRTGYFE---G- 478 (693)
Q Consensus 412 AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVt---------VKiR~G~~d---~- 478 (693)
.|.++.+++|+++|.|=-| ..+.++++++.+ .++||. +..-.|+.- +
T Consensus 97 na~rl~~eaGa~aVkiEgg-------------------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~ 156 (263)
T TIGR00222 97 NAARVMQETGANAVKLEGG-------------------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDE 156 (263)
T ss_pred HHHHHHHHhCCeEEEEcCc-------------------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCH
Confidence 7776665789999999532 223444555433 367766 433222321 1
Q ss_pred --hhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeC
Q 005508 479 --KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 534 (693)
Q Consensus 479 --~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG 534 (693)
...+++-++.++++||++|.+-+ .. -+.+++|.+.+ +||+||-|
T Consensus 157 ~~a~~~i~~A~a~e~AGA~~ivlE~---------vp-~~~a~~It~~l--~iP~iGIG 202 (263)
T TIGR00222 157 EAAKKLLEDALALEEAGAQLLVLEC---------VP-VELAAKITEAL--AIPVIGIG 202 (263)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcC---------Cc-HHHHHHHHHhC--CCCEEeec
Confidence 23566677788999999999853 22 37889999999 69999766
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.13 Score=55.22 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccC--CCccHHHHHHHHHHcCCCceEEEeC--CCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYS--KLADWDYIYQCARKASDDLQVLGNG--DIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~yt--g~Adw~~I~~i~~~~~~~IPVIgNG--dI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
.+....+++.|+|+|.+.-++..+.|+ +..+++.++++++.+ ++||++-| || +.+++.+++. .|+++|-|+
T Consensus 156 eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi-~~e~i~~~i~--~Gi~kiNv~ 230 (282)
T TIGR01859 156 DEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT--NIPLVLHGASGI-PEEQIKKAIK--LGIAKINID 230 (282)
T ss_pred HHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh--CCCEEEECCCCC-CHHHHHHHHH--cCCCEEEEC
Confidence 333444445899999975444333443 345899999999998 69999999 98 5677888776 599999999
Q ss_pred HHHh
Q 005508 559 RGAL 562 (693)
Q Consensus 559 RgaL 562 (693)
+.+.
T Consensus 231 T~l~ 234 (282)
T TIGR01859 231 TDCR 234 (282)
T ss_pred cHHH
Confidence 8876
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.15 Score=54.75 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=59.9
Q ss_pred HHHHHHHHcCCCEEEEecccccCccCCC--ccHHHHHHHHHHcCCCceEEEeCC--CCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 484 SLIADIGTWGASAVTVHGRTRQQRYSKL--ADWDYIYQCARKASDDLQVLGNGD--IYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 484 ~la~~L~eaG~daItVHgRtr~q~ytg~--Adw~~I~~i~~~~~~~IPVIgNGd--I~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
+..+.+++.|+|+|.+.-.+....|.+. .+++.+.++++.+ ++|++.-|+ |. .+++.+++. .|++.|-|++
T Consensus 160 ~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~--~Gi~KINv~T 234 (286)
T PRK06801 160 LARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIE--LGIHKINFYT 234 (286)
T ss_pred HHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHH--cCCcEEEehh
Confidence 3334445799999999777777777653 5899999999988 699999999 74 677888776 6999999998
Q ss_pred HHhh
Q 005508 560 GALI 563 (693)
Q Consensus 560 gaL~ 563 (693)
.+..
T Consensus 235 ~~~~ 238 (286)
T PRK06801 235 GMSQ 238 (286)
T ss_pred HHHH
Confidence 8754
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.085 Score=54.59 Aligned_cols=120 Identities=14% Similarity=0.054 Sum_probs=86.4
Q ss_pred hCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEE--ecCCCCCChhHHHHHHHHHHHcCCCE
Q 005508 419 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIK--VRTGYFEGKNRIDSLIADIGTWGASA 496 (693)
Q Consensus 419 ~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVK--iR~G~~d~~~~~~~la~~L~eaG~da 496 (693)
+.|+|.||+=+ ..|..+-.+.+.+.+-|++|++++.-++.+| +-++.-. .++....+....++|+|+
T Consensus 88 ~~GAdEiDmVi----------nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt-~ee~~~A~~i~~~aGAdF 156 (228)
T COG0274 88 ENGADEIDMVI----------NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLT-DEEKRKACEIAIEAGADF 156 (228)
T ss_pred HcCCCeeeeee----------eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccC-HHHHHHHHHHHHHhCCCE
Confidence 45999999832 2344445688999999999999885334444 4555433 344577788889999999
Q ss_pred EEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEE
Q 005508 497 VTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC 555 (693)
Q Consensus 497 ItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgV 555 (693)
|--+. +.+.+.|-.+.+.-.++.+...+-|=+.|||.|++|+..+++. |+.-+
T Consensus 157 VKTST----Gf~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~a--ga~Ri 209 (228)
T COG0274 157 VKTST----GFSAGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEA--GATRI 209 (228)
T ss_pred EEcCC----CCCCCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHH--hHHHh
Confidence 95432 2335567778888888877656899999999999999999984 54433
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.13 Score=55.45 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=58.7
Q ss_pred HHHHHHcCCCEEEEecccccCccC---CCccHHHHHHHHHHcCCCceEEEeCC--CCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 486 IADIGTWGASAVTVHGRTRQQRYS---KLADWDYIYQCARKASDDLQVLGNGD--IYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr~q~yt---g~Adw~~I~~i~~~~~~~IPVIgNGd--I~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
|..+.+.|+|+|.+.-.+-.+.|. +..+|+.++++++.++ ++|+++-|+ | +.+++.+++. .|++.|-|++.
T Consensus 159 a~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi-~~e~~~~~i~--~Gi~KiNv~T~ 234 (293)
T PRK07315 159 AKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGI-PDDQIQEAIK--LGVAKVNVNTE 234 (293)
T ss_pred HHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCC-CHHHHHHHHH--cCCCEEEEccH
Confidence 344447899999775444444553 3579999999999983 499999999 8 6788888776 69999999999
Q ss_pred HhhC
Q 005508 561 ALIK 564 (693)
Q Consensus 561 aL~n 564 (693)
+..+
T Consensus 235 i~~~ 238 (293)
T PRK07315 235 CQIA 238 (293)
T ss_pred HHHH
Confidence 9873
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.088 Score=55.52 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=82.6
Q ss_pred HHHHHhccccccCEEEEec------------CCCCC--------ChhHHHHHHHHHHHcCCCEEE-Eecccc--------
Q 005508 454 GIIEATSGTVDKPITIKVR------------TGYFE--------GKNRIDSLIADIGTWGASAVT-VHGRTR-------- 504 (693)
Q Consensus 454 eIV~av~~~v~iPVtVKiR------------~G~~d--------~~~~~~~la~~L~eaG~daIt-VHgRtr-------- 504 (693)
+-++.++..+++||-+|== .|.+- +...+.+|+....+.|.+.|+ ||...-
T Consensus 97 e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~g 176 (254)
T COG0134 97 EDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLG 176 (254)
T ss_pred HHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCC
Confidence 3346677778899988831 12211 223466777777777777664 554320
Q ss_pred --------cCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 505 --------QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 505 --------~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
..--+-..|.+...+++...|...-+|.-.||++++|+..+.. .|+|+|.||.++|..+.+...+++
T Consensus 177 a~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~--~ga~a~LVG~slM~~~~~~~a~~~ 251 (254)
T COG0134 177 AKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAK--AGADAFLVGEALMRADDPEEALRE 251 (254)
T ss_pred CCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHH--cCCCEEEecHHHhcCCCHHHHHHH
Confidence 0011223577888888888887789999999999999998655 699999999999999998665543
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.071 Score=55.85 Aligned_cols=166 Identities=10% Similarity=0.070 Sum_probs=101.5
Q ss_pred hhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc
Q 005508 385 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD 464 (693)
Q Consensus 385 ~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~ 464 (693)
|.+.+.+..+.++. =+...++- .|+++. .+|||.|=+--.... ...|+=....-..+.+...+++|.+.+.
T Consensus 2 ~~~~~~~~~~~~i~-~~~ayD~~----sA~i~e-~aG~dai~v~~s~~a---~~~G~pD~~~vtl~em~~~~~~I~r~~~ 72 (240)
T cd06556 2 WLLQKYKQEKERFA-TLTAYDYS----MAKQFA-DAGLNVMLVGDSQGM---TVAGYDDTLPYPVNDVPYHVRAVRRGAP 72 (240)
T ss_pred HhHHHHHhCCCeEE-EecCCCHH----HHHHHH-HcCCCEEEEChHHHH---HhcCCCCCCCcCHHHHHHHHHHHHhhCC
Confidence 55555555555553 22223321 234444 679999887422111 1112222223356778888888888874
Q ss_pred -cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCC------
Q 005508 465 -KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY------ 537 (693)
Q Consensus 465 -iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~------ 537 (693)
.||++-+-.|+.....++.+.++++.++|+++|.|-+.. ...+.|+.+++. .+||++-=|..
T Consensus 73 ~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~--------~~~~~i~ai~~a---~i~ViaRtd~~pq~~~~ 141 (240)
T cd06556 73 LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE--------WHIETLQMLTAA---AVPVIAHTGLTPQSVNT 141 (240)
T ss_pred CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH--------HHHHHHHHHHHc---CCeEEEEeCCchhhhhc
Confidence 799999999987766788999999999999999997632 111234444443 48888776662
Q ss_pred ---------CHHHHHHHH------hcCCCcCEEEEcHHHhhCCCchhHHHhc
Q 005508 538 ---------SYLDWNKHK------SDCPELASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 538 ---------s~eDa~~~l------~~~~gaDgVMIGRgaL~nPwiF~eIke~ 574 (693)
+.+++++++ ++ .|||+|.+= +. ++.+..+|.+.
T Consensus 142 ~gg~~~~~~~~~~~~~ai~Ra~ay~~-AGAd~i~~e-~~--~~e~~~~i~~~ 189 (240)
T cd06556 142 SGGDEGQYRGDEAGEQLIADALAYAP-AGADLIVME-CV--PVELAKQITEA 189 (240)
T ss_pred cCCceeeccCHHHHHHHHHHHHHHHH-cCCCEEEEc-CC--CHHHHHHHHHh
Confidence 123333333 23 699999985 32 66666666654
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.032 Score=58.92 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDS 484 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~ 484 (693)
+|.++.+|. .+|+|+|=|..+ +| .++.+.++++.... +++-+.|=+.. .. +
T Consensus 120 d~~QI~eA~-----~~GADaVLLI~~--------------~L-~~~~l~~l~~~a~~-lGle~lVEVh~-----~~---E 170 (254)
T PF00218_consen 120 DPYQIYEAR-----AAGADAVLLIAA--------------IL-SDDQLEELLELAHS-LGLEALVEVHN-----EE---E 170 (254)
T ss_dssp SHHHHHHHH-----HTT-SEEEEEGG--------------GS-GHHHHHHHHHHHHH-TT-EEEEEESS-----HH---H
T ss_pred CHHHHHHHH-----HcCCCEeehhHH--------------hC-CHHHHHHHHHHHHH-cCCCeEEEECC-----HH---H
Confidence 566665544 469999999642 22 34556677765543 45555554453 12 2
Q ss_pred HHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhC
Q 005508 485 LIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 564 (693)
Q Consensus 485 la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~n 564 (693)
+ .++.++|++.|-|-.|.-. +-..|++...++...+|.++.+|+-+||.+++|+..+.. .|+|+|.||..++..
T Consensus 171 l-~~al~~~a~iiGINnRdL~---tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~--~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 171 L-ERALEAGADIIGINNRDLK---TFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLAR--AGADAVLVGEALMRS 244 (254)
T ss_dssp H-HHHHHTT-SEEEEESBCTT---TCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCT--TT-SEEEESHHHHTS
T ss_pred H-HHHHHcCCCEEEEeCcccc---CcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHH--CCCCEEEECHHHhCC
Confidence 2 3344789999999988643 344677778888887766789999999999999998654 699999999999999
Q ss_pred CCchhHHHh
Q 005508 565 PWIFTEIKE 573 (693)
Q Consensus 565 PwiF~eIke 573 (693)
|+.-..+++
T Consensus 245 ~d~~~~~~~ 253 (254)
T PF00218_consen 245 PDPGEALRE 253 (254)
T ss_dssp SSHHHHHHH
T ss_pred CCHHHHHhc
Confidence 988776653
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.06 Score=54.93 Aligned_cols=144 Identities=16% Similarity=0.195 Sum_probs=91.6
Q ss_pred EEEEecCCCHHHHHHHHHHHhhhCCCcE--EEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCC
Q 005508 397 FGVQICGAYPDTLARTVELIDQQCTVDF--IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG 474 (693)
Q Consensus 397 ~gvQL~G~~pe~~~~AA~~~~~~aG~D~--IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G 474 (693)
+..+|...+...+.+..+.+. .+|+|. |||-=|.=+++. +.| -++|+++++.+++|+.|=+=.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~-~~g~d~lHiDiMDg~fvpn~---~~g----------~~~i~~i~~~~~~~~DvHLMv- 66 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLE-EAGADWLHIDIMDGHFVPNL---TFG----------PDIIKAIRKITDLPLDVHLMV- 66 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHH-HTT-SEEEEEEEBSSSSSSB----B-----------HHHHHHHHTTSSSEEEEEEES-
T ss_pred eehhhhhCCHHHHHHHHHHHH-HcCCCEEEEeecccccCCcc---cCC----------HHHHHHHhhcCCCcEEEEeee-
Confidence 567888889889999999887 578885 566445433332 222 456778888888898886633
Q ss_pred CCCChhHHHHHHHHHHHcCCCEEEEeccccc---------------------------------------------CccC
Q 005508 475 YFEGKNRIDSLIADIGTWGASAVTVHGRTRQ---------------------------------------------QRYS 509 (693)
Q Consensus 475 ~~d~~~~~~~la~~L~eaG~daItVHgRtr~---------------------------------------------q~yt 509 (693)
. +...+++.+.++|++.|++|-.+.. -++.
T Consensus 67 -~----~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~ 141 (201)
T PF00834_consen 67 -E----NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFG 141 (201)
T ss_dssp -S----SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTS
T ss_pred -c----cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCC
Confidence 1 2346788888999999999964311 1122
Q ss_pred CCc----cHHHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 510 KLA----DWDYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 510 g~A----dw~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
|.. -++-|+++++..+ .++.|..-||| +.+.+..+.+ .|||.+.+|+++..
T Consensus 142 Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~~~~~~--aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 142 GQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENIKQLVE--AGADIFVAGSAIFK 199 (201)
T ss_dssp SB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTHHHHHH--HT--EEEESHHHHT
T ss_pred cccccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHHHHHHH--cCCCEEEECHHHhC
Confidence 221 2345555554332 25889999999 5567777666 59999999998765
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.35 Score=49.53 Aligned_cols=150 Identities=9% Similarity=0.078 Sum_probs=89.7
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCc-----ccccC----CccccccCChHHHHHHHHHhccccccC
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPID-----IVVNK----GAGSCLLTKPMRMKGIIEATSGTVDKP 466 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~-----~v~k~----G~GsaLl~rp~~l~eIV~av~~~v~iP 466 (693)
+++.=|.+.++++..+.++.+. +.|++.|||-+--|.. .+.+. -.|++-.-+++.+.+.+++ +--
T Consensus 9 ~liaVlr~~~~e~a~~~~~al~-~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a-----GA~ 82 (204)
T TIGR01182 9 KIVPVIRIDDVDDALPLAKALI-EGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA-----GAQ 82 (204)
T ss_pred CEEEEEecCCHHHHHHHHHHHH-HcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc-----CCC
Confidence 4555578899999999999988 6899999998754421 11100 0122222233333333322 111
Q ss_pred EEEEecCCCCCChhHHHHHH-----------------HHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCce
Q 005508 467 ITIKVRTGYFEGKNRIDSLI-----------------ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ 529 (693)
Q Consensus 467 VtVKiR~G~~d~~~~~~~la-----------------~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IP 529 (693)
+.| .++++ .+..+.+ ....++|++.|-+..-. .+.| -.||+.++.-+| ++|
T Consensus 83 Fiv--sP~~~---~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~---~~GG---~~yikal~~plp-~i~ 150 (204)
T TIGR01182 83 FIV--SPGLT---PELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAE---VSGG---VKMLKALAGPFP-QVR 150 (204)
T ss_pred EEE--CCCCC---HHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCch---hcCC---HHHHHHHhccCC-CCc
Confidence 111 22221 1111111 12245666666665421 1111 478999999887 799
Q ss_pred EEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 530 VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 530 VIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
++..||| +.+.+.+.+. .|+.+|.+|..+..+.+
T Consensus 151 ~~ptGGV-~~~N~~~~l~--aGa~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 151 FCPTGGI-NLANVRDYLA--APNVACGGGSWLVPKDL 184 (204)
T ss_pred EEecCCC-CHHHHHHHHh--CCCEEEEEChhhcCchh
Confidence 9999999 6688888887 59999999988775443
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.54 Score=50.53 Aligned_cols=198 Identities=14% Similarity=0.080 Sum_probs=113.2
Q ss_pred CCCcHHHHHHHHHc---------CCCEEEecccccchhccCChh----hh-------hhhhccCCCCeEEEEec-CCCHH
Q 005508 349 TVGNLPFRRVCKVL---------GADVTCGEMAMCTNLLQGQAS----EW-------ALLRRHSSEDLFGVQIC-GAYPD 407 (693)
Q Consensus 349 ~v~dlpFRrl~~~~---------Gadl~~TEM~~a~~ll~g~~~----e~-------~ll~~h~~e~p~gvQL~-G~~pe 407 (693)
++-|..=-+++.+. |++.++|--..... ..|.+. .| +.+ ......|+++-+= |.++.
T Consensus 15 ~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~-s~G~pD~~~~~~~e~~~~~~~I-~~a~~~Pv~~D~d~Gg~~~ 92 (285)
T TIGR02320 15 EAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDST-SRGVPDIEEASWTQRLDVVEFM-FDVTTKPIILDGDTGGNFE 92 (285)
T ss_pred cCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHH-HCCCCCcCcCCHHHHHHHHHHH-HhhcCCCEEEecCCCCCHH
Confidence 44565555666677 88777664332221 223221 11 111 1223567665552 46889
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCCC-CCcccccCCccccccCChHHHHHHHHHhccc-cccCEEEEecCC--C-CCChhHH
Q 005508 408 TLARTVELIDQQCTVDFIDINMGC-PIDIVVNKGAGSCLLTKPMRMKGIIEATSGT-VDKPITIKVRTG--Y-FEGKNRI 482 (693)
Q Consensus 408 ~~~~AA~~~~~~aG~D~IDLN~GC-P~~~v~k~G~GsaLl~rp~~l~eIV~av~~~-v~iPVtVKiR~G--~-~d~~~~~ 482 (693)
.+.+.++.+. .+|+.+|.|-=.. |...-...+.|...+-..+...+.|++++++ .+.++.|=-|+. + ....+++
T Consensus 93 ~v~r~V~~l~-~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eA 171 (285)
T TIGR02320 93 HFRRLVRKLE-RRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDA 171 (285)
T ss_pred HHHHHHHHHH-HcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHH
Confidence 9999999887 6899999993221 1110001122223344566666667777655 333344433532 1 1245788
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCC---CceEEEeC---CCCCHHHHHHHHhcCCCcCEEE
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD---DLQVLGNG---DIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~---~IPVIgNG---dI~s~eDa~~~l~~~~gaDgVM 556 (693)
++-++...++|+|+|-+++. ..+.+-+.++.+.++. ++||+.+. +..+.++.. + -|+..|.
T Consensus 172 i~Ra~ay~eAGAD~ifv~~~--------~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~----~-lG~~~v~ 238 (285)
T TIGR02320 172 LKRAEAYAEAGADGIMIHSR--------KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFR----D-AGISVVI 238 (285)
T ss_pred HHHHHHHHHcCCCEEEecCC--------CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHH----H-cCCCEEE
Confidence 89999999999999999831 2334555666555531 47888765 334444433 3 5899999
Q ss_pred EcHHHh
Q 005508 557 IARGAL 562 (693)
Q Consensus 557 IGRgaL 562 (693)
.|-.++
T Consensus 239 ~~~~~~ 244 (285)
T TIGR02320 239 YANHLL 244 (285)
T ss_pred EhHHHH
Confidence 985554
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0017 Score=45.22 Aligned_cols=23 Identities=39% Similarity=0.998 Sum_probs=17.6
Q ss_pred CCCCCcCcccccCCCCCcccccC
Q 005508 141 GECPFLSSEGPCPYGLACRFSGT 163 (693)
Q Consensus 141 ~~Cp~f~~~G~Cp~G~~CRF~~s 163 (693)
..|..|...|.|+||.+|+|+..
T Consensus 4 ~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 4 KLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccChhhccCCccCCCCCcCccCC
Confidence 47999999999999999999753
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C .... |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.26 Score=58.98 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC-----------
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT----------- 473 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~----------- 473 (693)
+|..+++ ... ..|+++|-+.. -.+-+|+++ +-++.+++.+++||-.|==+
T Consensus 71 d~~~~a~---~y~-~~GA~aiSVlT-------e~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~ 131 (695)
T PRK13802 71 DPAALAR---EYE-QGGASAISVLT-------EGRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARA 131 (695)
T ss_pred CHHHHHH---HHH-HcCCcEEEEec-------CcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHH
Confidence 5555544 333 56888888842 123344443 33445566678888877211
Q ss_pred -CCCC--------ChhHHHHHHHHHHHcCCCEE-EEecccc----------------cCccCCCccHHHHHHHHHHcCCC
Q 005508 474 -GYFE--------GKNRIDSLIADIGTWGASAV-TVHGRTR----------------QQRYSKLADWDYIYQCARKASDD 527 (693)
Q Consensus 474 -G~~d--------~~~~~~~la~~L~eaG~daI-tVHgRtr----------------~q~ytg~Adw~~I~~i~~~~~~~ 527 (693)
|-+- +.....+|.....+.|.+.| -||.+.- ....+-..|.+...++...+|..
T Consensus 132 ~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~ 211 (695)
T PRK13802 132 HGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDD 211 (695)
T ss_pred cCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCC
Confidence 2110 22356667777777777766 4665420 01123345778888888888877
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 528 LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 528 IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
+.+|+-+||.+++|+..+.. .|+|+|.||..+|..|+.-..+++
T Consensus 212 ~~~VsESGI~~~~d~~~l~~--~G~davLIGeslm~~~dp~~~~~~ 255 (695)
T PRK13802 212 VIKVAESGVFGAVEVEDYAR--AGADAVLVGEGVATADDHELAVER 255 (695)
T ss_pred cEEEEcCCCCCHHHHHHHHH--CCCCEEEECHHhhCCCCHHHHHHH
Confidence 89999999999999998665 699999999999999987666654
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.083 Score=54.36 Aligned_cols=85 Identities=8% Similarity=-0.022 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCCEEEEecc---cccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 483 DSLIADIGTWGASAVTVHGR---TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgR---tr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
.+-+...++.|+|+|.+-.- ...... .+..|+.+..+++.. .||+++-||| +++.+.++++ +|||||.+-|
T Consensus 114 ~eea~~A~~~g~DYv~~GpifpT~tK~~~-~~~G~~~l~~~~~~~--~iP~vAIGGi-~~~nv~~v~~--~Ga~gVAvvs 187 (211)
T COG0352 114 LEEALEAEELGADYVGLGPIFPTSTKPDA-PPLGLEGLREIRELV--NIPVVAIGGI-NLENVPEVLE--AGADGVAVVS 187 (211)
T ss_pred HHHHHHHHhcCCCEEEECCcCCCCCCCCC-CccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHH--hCCCeEEehh
Confidence 34566677889999987432 222233 567899999999887 6999999999 7889988776 7999999999
Q ss_pred HHhhCCCchhHHHh
Q 005508 560 GALIKPWIFTEIKE 573 (693)
Q Consensus 560 gaL~nPwiF~eIke 573 (693)
+++..+......++
T Consensus 188 ai~~a~d~~~a~~~ 201 (211)
T COG0352 188 AITSAADPAAAAKA 201 (211)
T ss_pred HhhcCCCHHHHHHH
Confidence 99988877665543
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.49 Score=49.35 Aligned_cols=148 Identities=12% Similarity=0.040 Sum_probs=92.7
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhhhCCCcE--EEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 395 DLFGVQICGAYPDTLARTVELIDQQCTVDF--IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 395 ~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~--IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
.++...|.+.+...+.+-.+++. .+|+|. |||-=|.=+++. .+| -.++++++. ++|+.|=+=
T Consensus 13 ~~I~pSil~ad~~~l~~el~~l~-~~g~d~lHiDVMDG~FVPNi---tfG----------p~~i~~i~~--~~~~DvHLM 76 (228)
T PRK08091 13 QPISVGILASNWLKFNETLTTLS-ENQLRLLHFDIADGQFSPFF---TVG----------AIAIKQFPT--HCFKDVHLM 76 (228)
T ss_pred CeEEeehhhcCHHHHHHHHHHHH-HCCCCEEEEeccCCCcCCcc---ccC----------HHHHHHhCC--CCCEEEEec
Confidence 46788999999999999999987 578886 444334333332 222 345566653 556665433
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCEEEEeccc-----------ccCc----------------------------------
Q 005508 473 TGYFEGKNRIDSLIADIGTWGASAVTVHGRT-----------RQQR---------------------------------- 507 (693)
Q Consensus 473 ~G~~d~~~~~~~la~~L~eaG~daItVHgRt-----------r~q~---------------------------------- 507 (693)
. .+...+++.+.++|++.|++|.-. ++..
T Consensus 77 v------~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~ 150 (228)
T PRK08091 77 V------RDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLD 150 (228)
T ss_pred c------CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEEC
Confidence 2 234567888888888888888542 1111
Q ss_pred --cCCCc----cHHHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCc
Q 005508 508 --YSKLA----DWDYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 567 (693)
Q Consensus 508 --ytg~A----dw~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwi 567 (693)
+.|.. -++-|+++++... -++-|-.-||| +.+.+..+.+ .|||.+.+|+++..++.+
T Consensus 151 PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~--aGaD~~V~GSalF~~~d~ 216 (228)
T PRK08091 151 PRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSM-TLELASYLKQ--HQIDWVVSGSALFSQGEL 216 (228)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH--CCCCEEEEChhhhCCCCH
Confidence 11111 1233444443321 13668889999 5778877665 699999999998766653
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.093 Score=57.22 Aligned_cols=95 Identities=8% Similarity=0.058 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCc
Q 005508 449 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL 528 (693)
Q Consensus 449 p~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~I 528 (693)
++.+.+.++.++..+. |-.-.+.. ++..+.+..+.++|++.|.|..... .. ..-++.|+++++..+ ++
T Consensus 69 ~~~~~~~i~~vk~~l~----v~~~~~~~---~~~~~~~~~l~eagv~~I~vd~~~G---~~-~~~~~~i~~ik~~~p-~v 136 (325)
T cd00381 69 IEEQAEEVRKVKGRLL----VGAAVGTR---EDDKERAEALVEAGVDVIVIDSAHG---HS-VYVIEMIKFIKKKYP-NV 136 (325)
T ss_pred HHHHHHHHHHhccCce----EEEecCCC---hhHHHHHHHHHhcCCCEEEEECCCC---Cc-HHHHHHHHHHHHHCC-Cc
Confidence 3555667777764332 22233331 3456788888899999998864221 11 123578999998875 58
Q ss_pred eEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 529 QVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 529 PVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
||++ |.|.|.+++..+++ .|||+|.+|
T Consensus 137 ~Vi~-G~v~t~~~A~~l~~--aGaD~I~vg 163 (325)
T cd00381 137 DVIA-GNVVTAEAARDLID--AGADGVKVG 163 (325)
T ss_pred eEEE-CCCCCHHHHHHHHh--cCCCEEEEC
Confidence 8887 99999999998776 699999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.15 Score=52.56 Aligned_cols=149 Identities=11% Similarity=0.073 Sum_probs=90.6
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCc-----ccc------cCCccc---------------cccCCh
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPID-----IVV------NKGAGS---------------CLLTKP 449 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~-----~v~------k~G~Gs---------------aLl~rp 449 (693)
+++.=|.+.++++..+.++.+. +.|++.|||-+--|.. .++ .=|+|. .++--|
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~-~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALV-AGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHH-HcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 4555588999999999999998 6799999997654421 010 012222 222222
Q ss_pred HHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCce
Q 005508 450 MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ 529 (693)
Q Consensus 450 ~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IP 529 (693)
..-.++++..++ .++|+. +|. -+.-+ +..+.++|++.|-++.-. .. + ...|++.++.-+| .++
T Consensus 95 ~~~~~vi~~a~~-~~i~~i----PG~----~TptE-i~~a~~~Ga~~vKlFPa~---~~-g--g~~~lk~l~~p~p-~~~ 157 (212)
T PRK05718 95 GLTPPLLKAAQE-GPIPLI----PGV----STPSE-LMLGMELGLRTFKFFPAE---AS-G--GVKMLKALAGPFP-DVR 157 (212)
T ss_pred CCCHHHHHHHHH-cCCCEe----CCC----CCHHH-HHHHHHCCCCEEEEccch---hc-c--CHHHHHHHhccCC-CCe
Confidence 222233333222 122221 121 12233 555778999999996421 11 1 3578999998887 799
Q ss_pred EEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 530 VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 530 VIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
++..||| +.+.+.+++.. | +.+.+|++.|.+..
T Consensus 158 ~~ptGGV-~~~ni~~~l~a--g-~v~~vggs~L~~~~ 190 (212)
T PRK05718 158 FCPTGGI-SPANYRDYLAL--P-NVLCIGGSWMVPKD 190 (212)
T ss_pred EEEeCCC-CHHHHHHHHhC--C-CEEEEEChHhCCcc
Confidence 9999999 66888888874 5 45566667666544
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.093 Score=54.22 Aligned_cols=79 Identities=5% Similarity=-0.067 Sum_probs=58.6
Q ss_pred HHHHcCCCEEEEeccc-ccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 488 DIGTWGASAVTVHGRT-RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 488 ~L~eaG~daItVHgRt-r~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
...+.|+|+|.+-.-. .......+..++.++.+++.+ ++||++-||| +.+++.+++. .|++||.+-++++..++
T Consensus 126 ~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~n~~~~~~--~GA~giAvisai~~~~d 200 (221)
T PRK06512 126 EIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLASAVEVAE--TGAEFVALERAVFDAHD 200 (221)
T ss_pred HhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHHHHHHHHH--hCCCEEEEhHHhhCCCC
Confidence 3567999999985421 111123445677888888877 6999999999 9999999776 69999999999987665
Q ss_pred chhHH
Q 005508 567 IFTEI 571 (693)
Q Consensus 567 iF~eI 571 (693)
....+
T Consensus 201 p~~a~ 205 (221)
T PRK06512 201 PPLAV 205 (221)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.079 Score=58.35 Aligned_cols=76 Identities=14% Similarity=0.042 Sum_probs=57.6
Q ss_pred HHHHHcCCCEEEEeccc---ccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 487 ADIGTWGASAVTVHGRT---RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 487 ~~L~eaG~daItVHgRt---r~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
....+.|+|+|.+..-. ....+ .+..|+++..+++.. ++|||+-||| +.+.+.+++. .|+++|.++++++.
T Consensus 254 ~~A~~~GaDYI~lGPvf~T~tKp~~-~~~Gle~l~~~~~~~--~iPv~AiGGI-~~~ni~~l~~--~Ga~gVAvisaI~~ 327 (347)
T PRK02615 254 AKAIAEGADYIGVGPVFPTPTKPGK-APAGLEYLKYAAKEA--PIPWFAIGGI-DKSNIPEVLQ--AGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHcCCCEEEECCCcCCCCCCCC-CCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHH--cCCcEEEEeHHHhC
Confidence 44557899999874421 11222 356799999999887 6999999999 5899988765 69999999999987
Q ss_pred CCCch
Q 005508 564 KPWIF 568 (693)
Q Consensus 564 nPwiF 568 (693)
.+...
T Consensus 328 a~dp~ 332 (347)
T PRK02615 328 AEDPK 332 (347)
T ss_pred CCCHH
Confidence 55433
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.21 Score=48.78 Aligned_cols=132 Identities=11% Similarity=-0.010 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCC-CChhHHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF-EGKNRID 483 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~-d~~~~~~ 483 (693)
+.+.+.+.++.+. ..|+++|.++. ..+..+++.+... .+||.+++..+.. ....++.
T Consensus 11 d~~~~~~~~~~~~-~~gv~gi~~~g--------------------~~i~~~~~~~~~~-~~~v~~~v~~~~~~~~~~~~~ 68 (201)
T cd00945 11 TLEDIAKLCDEAI-EYGFAAVCVNP--------------------GYVRLAADALAGS-DVPVIVVVGFPTGLTTTEVKV 68 (201)
T ss_pred CHHHHHHHHHHHH-HhCCcEEEECH--------------------HHHHHHHHHhCCC-CCeEEEEecCCCCCCcHHHHH
Confidence 7788888888887 57999999983 2333333333211 4789998776421 1246788
Q ss_pred HHHHHHHHcCCCEEEEecccccCccC--CCccHHHHHHHHHHcCCCceEEE-e-CCC-CCHHHHHHH---HhcCCCcCEE
Q 005508 484 SLIADIGTWGASAVTVHGRTRQQRYS--KLADWDYIYQCARKASDDLQVLG-N-GDI-YSYLDWNKH---KSDCPELASC 555 (693)
Q Consensus 484 ~la~~L~eaG~daItVHgRtr~q~yt--g~Adw~~I~~i~~~~~~~IPVIg-N-GdI-~s~eDa~~~---l~~~~gaDgV 555 (693)
+.++.+.++|+++|.++.=.. ..++ ...-.++++++++.++.++||+. | -+. .+.+...++ +.. .|+|+|
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~-~g~~~i 146 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIG-SLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAE-AGADFI 146 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHH-HHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHH-hCCCEE
Confidence 999999999999999974210 0001 11235778888887411588774 2 222 366666553 334 789999
Q ss_pred EEcHH
Q 005508 556 MIARG 560 (693)
Q Consensus 556 MIGRg 560 (693)
=...|
T Consensus 147 K~~~~ 151 (201)
T cd00945 147 KTSTG 151 (201)
T ss_pred EeCCC
Confidence 76654
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.22 Score=53.51 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCc---c--C---CCcc----HHH
Q 005508 449 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR---Y--S---KLAD----WDY 516 (693)
Q Consensus 449 p~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~---y--t---g~Ad----w~~ 516 (693)
...+...++.|..++++||++-+-.| .+..++...++.+.++||.+|+|-..+...+ + . .... .+.
T Consensus 63 ~~e~~~~~~~I~~a~~~Pv~~D~d~G--g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~k 140 (285)
T TIGR02320 63 WTQRLDVVEFMFDVTTKPIILDGDTG--GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGK 140 (285)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecCCC--CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHH
Confidence 44555668888888899999999999 4677888999999999999999943321110 1 1 0111 223
Q ss_pred HHHHHHH-cCCCceEEEeCCCC----CHHHHHHHH---hcCCCcCEEEEc
Q 005508 517 IYQCARK-ASDDLQVLGNGDIY----SYLDWNKHK---SDCPELASCMIA 558 (693)
Q Consensus 517 I~~i~~~-~~~~IPVIgNGdI~----s~eDa~~~l---~~~~gaDgVMIG 558 (693)
|+.+++. ...+++||+-=|.+ ..+++.+.. .+ .|||+|+|=
T Consensus 141 I~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~e-AGAD~ifv~ 189 (285)
T TIGR02320 141 IRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAE-AGADGIMIH 189 (285)
T ss_pred HHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHH-cCCCEEEec
Confidence 3333333 22258888875543 355554322 23 699999985
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.3 Score=45.18 Aligned_cols=148 Identities=11% Similarity=0.057 Sum_probs=93.7
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe
Q 005508 392 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 392 ~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi 471 (693)
....|+++++.+.+.++..+.|+.++ .+|+|+|-|-. |.-. .-..+-+.+-.+.|.+++++||.+--
T Consensus 68 ~~~~~vi~gv~~~st~~~i~~a~~a~-~~Gad~v~v~~--P~~~----------~~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 68 AGRVPVIAGVGANSTEEAIELARHAQ-DAGADAVLVIP--PYYF----------KPSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp TTSSEEEEEEESSSHHHHHHHHHHHH-HTT-SEEEEEE--STSS----------SCCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred cCceEEEecCcchhHHHHHHHHHHHh-hcCceEEEEec--cccc----------cchhhHHHHHHHHHHhhcCCCEEEEE
Confidence 34578999999999999999999987 68999999843 4321 12456677778888888899999866
Q ss_pred cC---CCCCChhHHHHHHHHHHHc-CCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh
Q 005508 472 RT---GYFEGKNRIDSLIADIGTW-GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 547 (693)
Q Consensus 472 R~---G~~d~~~~~~~la~~L~ea-G~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~ 547 (693)
.. |.. -..+++.+|.+. .+-+|-. ...|+..+.++......++. |.+| .+ ..+...+.
T Consensus 135 ~P~~tg~~----ls~~~l~~L~~~~nv~giK~----------s~~~~~~~~~~~~~~~~~~~-v~~G--~d-~~~~~~l~ 196 (289)
T PF00701_consen 135 NPARTGND----LSPETLARLAKIPNVVGIKD----------SSGDLERLIQLLRAVGPDFS-VFCG--DD-ELLLPALA 196 (289)
T ss_dssp BHHHHSST----SHHHHHHHHHTSTTEEEEEE----------SSSBHHHHHHHHHHSSTTSE-EEES--SG-GGHHHHHH
T ss_pred CCCccccC----CCHHHHHHHhcCCcEEEEEc----------CchhHHHHHHHhhhcccCee-eecc--cc-cccccccc
Confidence 44 432 223344445442 2222221 12456666777766543454 4566 12 22344454
Q ss_pred cCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 548 DCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 548 ~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
.|++|++.|-+.+ -|+++.++-+
T Consensus 197 --~G~~G~is~~~n~-~P~~~~~i~~ 219 (289)
T PF00701_consen 197 --AGADGFISGLANV-FPELIVEIYD 219 (289)
T ss_dssp --TTSSEEEESGGGT-HHHHHHHHHH
T ss_pred --ccCCEEEEccccc-ChHHHHHHHH
Confidence 5899999997665 4666666644
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.079 Score=58.40 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=58.3
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
..+.|-...|..+ +..+.++.|.++|+|.|.|..-.....+ -.+.|+.+++..+ ++||| .|.|-|++-+..
T Consensus 95 ~~l~V~aavg~~~---~~~er~~~L~~agvD~ivID~a~g~s~~----~~~~ik~ik~~~~-~~~vi-aGNV~T~e~a~~ 165 (352)
T PF00478_consen 95 GRLLVAAAVGTRD---DDFERAEALVEAGVDVIVIDSAHGHSEH----VIDMIKKIKKKFP-DVPVI-AGNVVTYEGAKD 165 (352)
T ss_dssp SCBCEEEEEESST---CHHHHHHHHHHTT-SEEEEE-SSTTSHH----HHHHHHHHHHHST-TSEEE-EEEE-SHHHHHH
T ss_pred ccceEEEEecCCH---HHHHHHHHHHHcCCCEEEccccCccHHH----HHHHHHHHHHhCC-CceEE-ecccCCHHHHHH
Confidence 3444544555443 3467888899999999999744322111 2468999999997 69988 477999999999
Q ss_pred HHhcCCCcCEEEEcHH
Q 005508 545 HKSDCPELASCMIARG 560 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRg 560 (693)
++. .|||+|-||=|
T Consensus 166 L~~--aGad~vkVGiG 179 (352)
T PF00478_consen 166 LID--AGADAVKVGIG 179 (352)
T ss_dssp HHH--TT-SEEEESSS
T ss_pred HHH--cCCCEEEEecc
Confidence 766 69999998843
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.46 Score=49.47 Aligned_cols=58 Identities=12% Similarity=-0.013 Sum_probs=45.0
Q ss_pred CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 510 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 510 g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
.|..-+.+++++. ..|+|.-|||.|++.+.++.. .|||.|..|.-+..+|.-+.++-+
T Consensus 178 ~Pv~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~--agAD~IVtG~iiee~~~~~~~~v~ 235 (240)
T COG1646 178 DPVPVEMVSRVLS----DTPLIVGGGIRSPEQAREMAE--AGADTIVTGTIIEEDPDKALETVE 235 (240)
T ss_pred CCcCHHHHHHhhc----cceEEEcCCcCCHHHHHHHHH--cCCCEEEECceeecCHHHHHHHHH
Confidence 3445555655554 359999999999999999776 599999999999999966666543
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.16 Score=53.61 Aligned_cols=143 Identities=18% Similarity=0.173 Sum_probs=83.7
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccC-EEEEecCC-CCCChhHHHHHHHHH-
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKP-ITIKVRTG-YFEGKNRIDSLIADI- 489 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iP-VtVKiR~G-~~d~~~~~~~la~~L- 489 (693)
|+++. .+|||.|= .|-....+. -|+-....-..+.+...+++|.+.++.| |++-+--| +..+.+++..-+.++
T Consensus 25 A~l~e-~aG~d~i~--vGds~~~~~-lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~ 100 (254)
T cd06557 25 AKLAD-EAGVDVIL--VGDSLGMVV-LGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLM 100 (254)
T ss_pred HHHHH-HcCCCEEE--ECHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHH
Confidence 44454 68999994 343332222 3444444556778888888998888999 77766523 434456666665555
Q ss_pred HHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEE-----------EeCCCC----CHHHHHHH------Hhc
Q 005508 490 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL-----------GNGDIY----SYLDWNKH------KSD 548 (693)
Q Consensus 490 ~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVI-----------gNGdI~----s~eDa~~~------l~~ 548 (693)
+++|+++|.|-+.. +.+..|+..+...|||+ ..||.. +.+.+.++ +++
T Consensus 101 ~~aGa~aVkiEd~~-----------~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~ 169 (254)
T cd06557 101 KEAGADAVKLEGGA-----------EVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEE 169 (254)
T ss_pred HHhCCeEEEEcCcH-----------HHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHH
Confidence 55999999997641 33444444333368988 556553 33222222 234
Q ss_pred CCCcCEEEEcHHHhhCCCchhHHHhc
Q 005508 549 CPELASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 549 ~~gaDgVMIGRgaL~nPwiF~eIke~ 574 (693)
.|||+|.+= .+- ..+.++|-+.
T Consensus 170 -AGA~~i~lE--~v~-~~~~~~i~~~ 191 (254)
T cd06557 170 -AGAFALVLE--CVP-AELAKEITEA 191 (254)
T ss_pred -CCCCEEEEc--CCC-HHHHHHHHHh
Confidence 699998762 121 2355555543
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.063 Score=53.24 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=53.3
Q ss_pred HHHHHHcCCCEEEEeccc---ccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHH
Q 005508 486 IADIGTWGASAVTVHGRT---RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 486 a~~L~eaG~daItVHgRt---r~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 561 (693)
+..+.+.|+|+|.+..-. ....+ .+..|+.+.++++.. ++||++-||| +++++.++++ .|++||.+-|++
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~-~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~--~Ga~gvAvi~aI 180 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGA-PPLGLDGLREIARAS--PIPVYALGGI-TPENIPELRE--AGADGVAVISAI 180 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS--TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHH--TT-SEEEESHHH
T ss_pred HHHhhhcCCCEEEECCccCCCCCccc-cccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHH--cCCCEEEEEeeC
Confidence 667778999999986542 12233 556899999999988 6999999999 7999988765 699999998864
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.13 Score=52.64 Aligned_cols=82 Identities=11% Similarity=-0.040 Sum_probs=60.8
Q ss_pred HHHHHHcCCCEEEEecc---cccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 486 IADIGTWGASAVTVHGR---TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 486 a~~L~eaG~daItVHgR---tr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
+..+.+.|+|+|.+..- +....+..+..|+.+.++.+... ++||++-||| +.+++.+++. .|++||.+-++++
T Consensus 115 ~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~-~~PV~AiGGI-~~~ni~~l~~--~Ga~GiAvisai~ 190 (211)
T PRK03512 115 IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLA-DYPTVAIGGI-SLERAPAVLA--TGVGSIAVVSAIT 190 (211)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCC-CHHHHHHHHH--cCCCEEEEhhHhh
Confidence 34556789999988543 12223445567888888877642 5999999999 5888988776 6999999999998
Q ss_pred hCCCchhHH
Q 005508 563 IKPWIFTEI 571 (693)
Q Consensus 563 ~nPwiF~eI 571 (693)
..+.+-..+
T Consensus 191 ~~~d~~~~~ 199 (211)
T PRK03512 191 QAADWRAAT 199 (211)
T ss_pred CCCCHHHHH
Confidence 766655444
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.28 Score=56.65 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+..+-++.|.++|+|.|.|..- +..+ ..-|+.|+++++..| +++| ..|+|.|.+++..+++ .|||+|.+|
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~---~g~~-~~~~~~i~~ik~~~p-~~~v-i~g~v~t~e~a~~a~~--aGaD~i~vg 317 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSS---QGDS-IYQLEMIKYIKKTYP-ELDV-IGGNVVTMYQAQNLIQ--AGVDGLRVG 317 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCC---CCCc-HHHHHHHHHHHHhCC-CCcE-EEecCCCHHHHHHHHH--cCcCEEEEC
Confidence 4567888999999999999652 1211 235899999999875 3554 4589999999999876 699999775
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.13 Score=56.60 Aligned_cols=113 Identities=13% Similarity=0.084 Sum_probs=76.3
Q ss_pred CccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccC--ccCCCccH--
Q 005508 440 GAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQ--RYSKLADW-- 514 (693)
Q Consensus 440 G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q--~ytg~Adw-- 514 (693)
|.+++.+.+|+ +.+-++.+++.. +.||.+=+-.... ...+...+.+.++..+++++.||--..+. ...+..+|
T Consensus 96 Gs~~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~-~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~ 173 (352)
T PRK05437 96 GSQRAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQL-YGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRG 173 (352)
T ss_pred cccHhhccChh-hHHHHHHHHHHCCCceEEeecCcccc-CCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHH
Confidence 45556677888 777788888876 8898884443211 11224556666777789999999643221 22333455
Q ss_pred --HHHHHHHHHcCCCceEEE--eCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 515 --DYIYQCARKASDDLQVLG--NGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 515 --~~I~~i~~~~~~~IPVIg--NGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+.|+.+++.+ ++||+. +|.-.+.+++..+.+ .|+|+|.|+
T Consensus 174 ~le~i~~i~~~~--~vPVivK~~g~g~s~~~a~~l~~--~Gvd~I~Vs 217 (352)
T PRK05437 174 WLDNIAEIVSAL--PVPVIVKEVGFGISKETAKRLAD--AGVKAIDVA 217 (352)
T ss_pred HHHHHHHHHHhh--CCCEEEEeCCCCCcHHHHHHHHH--cCCCEEEEC
Confidence 5678888887 699996 676688988877554 699999873
|
|
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.61 Score=51.25 Aligned_cols=123 Identities=11% Similarity=0.138 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
+++.+.+-|+.+. ..||..+-|-.| .+++.-.+.|++|++++ ++.|.|-.-.+|+ ..++
T Consensus 138 ~~e~~~~~a~~~~-~~Gf~~~Kikvg----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~--~~~A 198 (352)
T cd03328 138 DDDRLREQLSGWV-AQGIPRVKMKIG----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAYS--RKQA 198 (352)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEeecC----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCC--HHHH
Confidence 5777766666555 369999998643 12466678889999888 4667776666673 5789
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHH--cCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARK--ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~--~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
.++++.|++.++.++ +|-. .+-|++-.+++++. + ++||.+.=.+++..++.+++.. ..+|.|++
T Consensus 199 ~~~~~~l~~~~~~~~-------EeP~-~~~d~~~~~~l~~~~~~--~iPIa~gE~~~~~~~~~~li~~-~a~div~~ 264 (352)
T cd03328 199 LALARAFADEGVTWF-------EEPV-SSDDLAGLRLVRERGPA--GMDIAAGEYAYTLAYFRRLLEA-HAVDVLQA 264 (352)
T ss_pred HHHHHHHHHhCcchh-------hCCC-ChhhHHHHHHHHhhCCC--CCCEEecccccCHHHHHHHHHc-CCCCEEec
Confidence 999999999888766 3322 33578888999998 5 6999987789999999999886 67888874
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.37 Score=53.18 Aligned_cols=124 Identities=9% Similarity=0.104 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
.++.+..+++.+. +.||+.+-|..|++-.. .-.+.|++||+++ ++.|.|-.--+|+ .+++
T Consensus 143 ~~e~~~~~~~~~~-~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~--~~~A 204 (372)
T COG4948 143 PEEMAAEAARALV-ELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWT--LEEA 204 (372)
T ss_pred CHHHHHHHHHHHH-hcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcC--HHHH
Confidence 5677777777776 57999999999887532 5567788898888 4667776666774 3568
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
..+++.|++.++.+|- |- ..+-|.+..+++++.+ ++||.+.=-+++..|+.++++. ..+|.|++
T Consensus 205 ~~~~~~l~~~~l~~iE-------eP-~~~~d~~~~~~l~~~~--~~PIa~gEs~~~~~~~~~l~~~-~a~div~~ 268 (372)
T COG4948 205 IRLARALEEYGLEWIE-------EP-LPPDDLEGLRELRAAT--STPIAAGESVYTRWDFRRLLEA-GAVDIVQP 268 (372)
T ss_pred HHHHHHhcccCcceEE-------CC-CCccCHHHHHHHHhcC--CCCEecCcccccHHHHHHHHHc-CCCCeecC
Confidence 9999999999977762 22 2345788889999877 5999999999999999999986 56888875
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.35 Score=50.67 Aligned_cols=134 Identities=16% Similarity=0.274 Sum_probs=79.3
Q ss_pred HHHHHhhhCCCcEEEEcC-------CCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHH
Q 005508 412 TVELIDQQCTVDFIDINM-------GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDS 484 (693)
Q Consensus 412 AA~~~~~~aG~D~IDLN~-------GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~ 484 (693)
.|++++ .+||++|=+-. |-| |+ .++ ....+.+.++.|..++++||+|-+..|+-++..++..
T Consensus 21 SAr~~e-~~Gf~ai~~sg~~~a~s~G~p------D~---~~l-t~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~ 89 (238)
T PF13714_consen 21 SARLAE-RAGFDAIATSGAGVAASLGYP------DG---GLL-TLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVAR 89 (238)
T ss_dssp HHHHHH-HTT-SEEEEHHHHHHHHTTS-------SS---S-S--HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHH
T ss_pred HHHHHH-HcCCCEEEechHHHHHHcCCC------CC---CCC-CHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHH
Confidence 355555 67999987742 222 11 122 3455667788888888999999999999776788999
Q ss_pred HHHHHHHcCCCEEEEecccccC-ccCCCcc-HHHHHHHH---HHcC-CCceEEEeCCCCC--HHHHHHHHh------cCC
Q 005508 485 LIADIGTWGASAVTVHGRTRQQ-RYSKLAD-WDYIYQCA---RKAS-DDLQVLGNGDIYS--YLDWNKHKS------DCP 550 (693)
Q Consensus 485 la~~L~eaG~daItVHgRtr~q-~ytg~Ad-w~~I~~i~---~~~~-~~IPVIgNGdI~s--~eDa~~~l~------~~~ 550 (693)
.++.+.++|+.+|+|-.. +.. ....... =+++.+|+ +... .++-|++==|.+. .+...+.++ + .
T Consensus 90 tv~~~~~aG~agi~IEDq-~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~e-A 167 (238)
T PF13714_consen 90 TVRELERAGAAGINIEDQ-RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAE-A 167 (238)
T ss_dssp HHHHHHHCT-SEEEEESB-STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHcCCcEEEeecc-ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHH-c
Confidence 999999999999999655 111 1111112 13344444 3332 1466667667653 333333332 3 6
Q ss_pred CcCEEEEc
Q 005508 551 ELASCMIA 558 (693)
Q Consensus 551 gaDgVMIG 558 (693)
|||+|++=
T Consensus 168 GAD~ifi~ 175 (238)
T PF13714_consen 168 GADMIFIP 175 (238)
T ss_dssp T-SEEEET
T ss_pred CCCEEEeC
Confidence 99999874
|
... |
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.57 Score=51.45 Aligned_cols=142 Identities=11% Similarity=0.100 Sum_probs=100.5
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecC
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT 473 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~ 473 (693)
++..-+.+.+++.+.+.++.+. ..||..|-|..|-+.... .. -.+++.-.+.|+++++.+ ++.|.|-..-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~~KiKvg~~~~~~---~~----~~~~~~D~~~i~avr~~~g~~~~l~vDaN~ 185 (352)
T cd03325 114 RVYSWIGGDRPSDVAEAARARR-EAGFTAVKMNATEELQWI---DT----SKKVDAAVERVAALREAVGPDIDIGVDFHG 185 (352)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEecCCCCcccC---CC----HHHHHHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 4444455567888766666555 469999999776321110 00 023556678888888877 4667666666
Q ss_pred CCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 474 G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 553 (693)
+|+ ..++.++++.|++.|+.+|- |-. .+-||+..+++++.. .+||.+.=.++++.++..++.. ..+|
T Consensus 186 ~~~--~~~A~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~L~~~~--~~pia~dEs~~~~~~~~~~~~~-~~~d 252 (352)
T cd03325 186 RVS--KPMAKDLAKELEPYRLLFIE-------EPV-LPENVEALAEIAART--TIPIATGERLFSRWDFKELLED-GAVD 252 (352)
T ss_pred CCC--HHHHHHHHHhccccCCcEEE-------CCC-CccCHHHHHHHHHhC--CCCEEecccccCHHHHHHHHHh-CCCC
Confidence 664 56799999999999988773 322 335789999999988 6999887788999999998876 6788
Q ss_pred EEEEc
Q 005508 554 SCMIA 558 (693)
Q Consensus 554 gVMIG 558 (693)
.|++-
T Consensus 253 ~v~~d 257 (352)
T cd03325 253 IIQPD 257 (352)
T ss_pred EEecC
Confidence 88754
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.32 Score=51.52 Aligned_cols=136 Identities=18% Similarity=0.102 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
+.+.+.+-++.+. ..|+++|=+|. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++
T Consensus 19 D~~~~~~~i~~l~-~~Gv~gl~v~G----------stGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~---~~~~~~ 84 (284)
T cd00950 19 DFDALERLIEFQI-ENGTDGLVVCG----------TTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS---NNTAEA 84 (284)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECC----------CCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC---ccHHHH
Confidence 6788888888887 57999999973 223333334444455666555555 4788775543 245789
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
.++++.++++|+++|.+..-.- ...+...-++|.++|.+.. ++||+ ..|-..|++.+.++.+. ..+-|+=
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~-~~~~~~~l~~~~~~ia~~~--~~pi~lYn~P~~~g~~ls~~~~~~L~~~-p~v~giK 160 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYY-NKPSQEGLYAHFKAIAEAT--DLPVILYNVPGRTGVNIEPETVLRLAEH-PNIVGIK 160 (284)
T ss_pred HHHHHHHHHcCCCEEEEccccc-CCCCHHHHHHHHHHHHhcC--CCCEEEEEChhHhCCCCCHHHHHHHhcC-CCEEEEE
Confidence 9999999999999998864210 1111222467888888876 57877 24667788888886653 5555554
Q ss_pred Ec
Q 005508 557 IA 558 (693)
Q Consensus 557 IG 558 (693)
.+
T Consensus 161 ~s 162 (284)
T cd00950 161 EA 162 (284)
T ss_pred EC
Confidence 33
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=3.3 Score=44.84 Aligned_cols=202 Identities=14% Similarity=0.052 Sum_probs=122.0
Q ss_pred CcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChh----hhh----hhh--ccCCCCeEEEEecC--CCHH
Q 005508 340 EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS----EWA----LLR--RHSSEDLFGVQICG--AYPD 407 (693)
Q Consensus 340 nriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~----e~~----ll~--~h~~e~p~gvQL~G--~~pe 407 (693)
+.++++| ++-|..=-+++.+.|.+.++|--........|.+. .|. .++ ......|+++-+=+ .++.
T Consensus 16 ~~~l~~p--~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIV--GTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEec--CCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHH
Confidence 4455555 44565555777888998876654332211123221 111 111 12235688877732 2899
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCC--CCChhHHHH
Q 005508 408 TLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY--FEGKNRIDS 484 (693)
Q Consensus 408 ~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~--~d~~~~~~~ 484 (693)
.+.+.++.+. .+|+.+|.|==.. .++.+....|..| -.++...+=|++++.+. +.++.|=-|+.. ....+++++
T Consensus 94 ~v~r~V~~~~-~aGaagi~IEDq~-~pK~cg~~~~~~l-v~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~ 170 (292)
T PRK11320 94 NIARTVKSMI-KAGAAAVHIEDQV-GAKRCGHRPNKEI-VSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIE 170 (292)
T ss_pred HHHHHHHHHH-HcCCeEEEEecCC-CccccCCCCCCcc-cCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHH
Confidence 9999999987 7899999994332 1222222223333 34555555555555543 566777667632 223567777
Q ss_pred HHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEE---eCC---CCCHHHHHHHHhcCCCcCEEEEc
Q 005508 485 LIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLG---NGD---IYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 485 la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIg---NGd---I~s~eDa~~~l~~~~gaDgVMIG 558 (693)
=++...++|+|+|-+++- .+.+.++++.+.+ ++|+++ +|+ ..+.++..+ -|+..|.+|
T Consensus 171 Ra~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L~~-----lGv~~v~~~ 234 (292)
T PRK11320 171 RAQAYVEAGADMIFPEAM---------TELEMYRRFADAV--KVPILANITEFGATPLFTTEELAS-----AGVAMVLYP 234 (292)
T ss_pred HHHHHHHcCCCEEEecCC---------CCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHH-----cCCcEEEEC
Confidence 788889999999999862 3567888999888 578743 233 345555433 589999999
Q ss_pred HHHh
Q 005508 559 RGAL 562 (693)
Q Consensus 559 RgaL 562 (693)
-.++
T Consensus 235 ~~~~ 238 (292)
T PRK11320 235 LSAF 238 (292)
T ss_pred hHHH
Confidence 6554
|
|
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.54 Score=53.07 Aligned_cols=127 Identities=7% Similarity=0.001 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChh
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKN 480 (693)
Q Consensus 403 G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~ 480 (693)
+.+++.+.+-|+.+. ..||..+-|..| .+++.-.+.|+++++.+ ++.|.|-.-.+|+ ..
T Consensus 194 ~~~~~~~~~~a~~~~-~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~--~~ 254 (415)
T cd03324 194 GYSDEKLRRLCKEAL-AQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWD--VP 254 (415)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCC--HH
Confidence 457787777666655 359999998654 24556677888999887 4566665555664 57
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
++.++++.|++.|+.+| +|-. .+.+++..+++++..+ .++||.+.=.+++..++..++.. ..+|.+++
T Consensus 255 ~A~~~~~~L~~~~l~~i-------EEP~-~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-~a~dil~~ 323 (415)
T cd03324 255 EAIEWVKQLAEFKPWWI-------EEPT-SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-GAIDVVQI 323 (415)
T ss_pred HHHHHHHHhhccCCCEE-------ECCC-CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-CCCCEEEe
Confidence 89999999999998876 3333 3457888888888761 13899887789999999998876 67888874
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.5 Score=51.12 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
+.+.+.+-++.+. ..|+++|=+|. ..|-...-..+.-.++++.+.+.+ .+||.+-+-. .+..++
T Consensus 27 D~~~l~~lv~~li-~~Gv~Gi~v~G----------stGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~---~~t~~a 92 (309)
T cd00952 27 DLDETARLVERLI-AAGVDGILTMG----------TFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT---LNTRDT 92 (309)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECc----------ccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc---CCHHHH
Confidence 6788888888887 47999999974 334444445555566777666655 5898886653 245789
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCC---ccHHHHHHHHHHcCCCceEEE------eCCCCCHHHHHHHH
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLG------NGDIYSYLDWNKHK 546 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~---Adw~~I~~i~~~~~~~IPVIg------NGdI~s~eDa~~~l 546 (693)
.++++.++++|+|+|-|..= .|..+ .-.+|.+.|++.++ ++||+. .|--.+++.+.++.
T Consensus 93 i~~a~~A~~~Gad~vlv~~P----~y~~~~~~~l~~yf~~va~a~~-~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 93 IARTRALLDLGADGTMLGRP----MWLPLDVDTAVQFYRDVAEAVP-EMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHHHHHHHhCCCEEEECCC----cCCCCCHHHHHHHHHHHHHhCC-CCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 99999999999999998742 23222 34678888888763 366652 24334566666544
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.81 Score=50.47 Aligned_cols=134 Identities=8% Similarity=0.120 Sum_probs=90.5
Q ss_pred CeEEEEecCCCHHHHH-HHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEe
Q 005508 395 DLFGVQICGAYPDTLA-RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKV 471 (693)
Q Consensus 395 ~p~gvQL~G~~pe~~~-~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKi 471 (693)
.++-..+...+++.+. ++.+.+. ..||..|-|-.| . .+++.-.+.|+++++.+ ++.+.+-.
T Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~~KiKvg------------~---~~~~~d~~~v~~~re~~g~~~~l~~Da 194 (368)
T TIGR02534 131 VDVTWTLASGDTDRDIAEAEERIE-EKRHRSFKLKIG------------A---RDPADDVAHVVAIAKALGDRASVRVDV 194 (368)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHH-hcCcceEEEEeC------------C---CCcHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 3444445455555444 3443333 459999888543 1 23555567788888877 34444444
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCC
Q 005508 472 RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 551 (693)
Q Consensus 472 R~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g 551 (693)
--+| +..++.++++.|++.++.+| +|-. .+-||+-.+++++.. .+||.+.-.+.+..++..++.. ..
T Consensus 195 N~~~--~~~~A~~~~~~l~~~~~~~i-------EeP~-~~~d~~~~~~l~~~~--~~pia~dE~~~~~~~~~~~~~~-~~ 261 (368)
T TIGR02534 195 NAAW--DERTALHYLPQLADAGVELI-------EQPT-PAENREALARLTRRF--NVPIMADESVTGPADALAIAKA-SA 261 (368)
T ss_pred CCCC--CHHHHHHHHHHHHhcChhhe-------ECCC-CcccHHHHHHHHHhC--CCCEEeCcccCCHHHHHHHHHh-CC
Confidence 4455 34679999999999887665 2322 234688888898887 6999998889999999998886 67
Q ss_pred cCEEEE
Q 005508 552 LASCMI 557 (693)
Q Consensus 552 aDgVMI 557 (693)
+|.|.+
T Consensus 262 ~d~~~~ 267 (368)
T TIGR02534 262 ADVFAL 267 (368)
T ss_pred CCEEEE
Confidence 898874
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.4 Score=45.28 Aligned_cols=114 Identities=12% Similarity=0.014 Sum_probs=67.8
Q ss_pred cccCEEEEecCCCC-CChhHHH-HHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCC-H
Q 005508 463 VDKPITIKVRTGYF-EGKNRID-SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS-Y 539 (693)
Q Consensus 463 v~iPVtVKiR~G~~-d~~~~~~-~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s-~ 539 (693)
.++||.+=.-.|-. .+..+.+ ..++...+.|+|.|-+ .|++ +-++++.+.. ++||+..||=.. .
T Consensus 139 ~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~-------~y~~----~~f~~vv~a~--~vPVviaGG~k~~~ 205 (264)
T PRK08227 139 YGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKT-------YYVE----EGFERITAGC--PVPIVIAGGKKLPE 205 (264)
T ss_pred hCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEec-------CCCH----HHHHHHHHcC--CCcEEEeCCCCCCH
Confidence 48998872222211 1222333 3445557999999965 3554 5678888877 699998888773 3
Q ss_pred HHHHHHHhc--CCCcCEEEEcHHHhhCCCchhHHHhc---cCCCCCHHHHHHHHH
Q 005508 540 LDWNKHKSD--CPELASCMIARGALIKPWIFTEIKEQ---RHWDITSGERLNIMK 589 (693)
Q Consensus 540 eDa~~~l~~--~~gaDgVMIGRgaL~nPwiF~eIke~---~~~d~s~~Erl~il~ 589 (693)
+++.+++.. ..|+.||++||=....|.-..-++.- -+-..|..|=++++.
T Consensus 206 ~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~~~s~~eA~~~~~ 260 (264)
T PRK08227 206 RDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHENETAKEAYELYL 260 (264)
T ss_pred HHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 444443321 16999999999888776533332221 233445555444443
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.77 Score=47.91 Aligned_cols=143 Identities=13% Similarity=0.165 Sum_probs=90.8
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcE--EEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDF--IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 473 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~--IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~ 473 (693)
.+..+|...+...+.+-.+.+. . |+|. |||-=|.=+++. .+| -.+|+++++.+++|+.|=+=.
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~-~-g~d~lH~DiMDG~FVPN~---tfg----------~~~i~~ir~~t~~~~DvHLMv 68 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLN-S-KADYFHIDIMDGHFVPNL---TLS----------PFFVSQVKKLASKPLDVHLMV 68 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHH-h-CCCEEEEecccCccCCCc---ccC----------HHHHHHHHhcCCCCeEEEEEe
Confidence 3678889999999988888886 4 6776 444334333332 222 356777877777787775433
Q ss_pred CCCCChhHHHHHHHHHHHcCCCEEEEecccc------------cC----------------------------------c
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHGRTR------------QQ----------------------------------R 507 (693)
Q Consensus 474 G~~d~~~~~~~la~~L~eaG~daItVHgRtr------------~q----------------------------------~ 507 (693)
.+...+++.+.++|++.|++|.-.. +. +
T Consensus 69 ------~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PG 142 (229)
T PRK09722 69 ------TDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPG 142 (229)
T ss_pred ------cCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCC
Confidence 2356788889999999999986521 00 0
Q ss_pred cCCCc----cHHHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 508 YSKLA----DWDYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 508 ytg~A----dw~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
+.|.. -++-|+++++... .++-|-.-|||. .+.+..+.+ .|||.+.+|+.++
T Consensus 143 f~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~--aGad~~V~Gss~i 201 (229)
T PRK09722 143 FAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLME--AGADVFIVGTSGL 201 (229)
T ss_pred CcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHH--cCCCEEEEChHHH
Confidence 11110 1223344443221 136688999995 777877665 6999999998754
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.33 Score=52.36 Aligned_cols=152 Identities=12% Similarity=0.144 Sum_probs=88.0
Q ss_pred HHHHhhhCCCcEEEEcCC-CC-CcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHH
Q 005508 413 VELIDQQCTVDFIDINMG-CP-IDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 490 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~G-CP-~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ 490 (693)
|++++ .+||++|=+-.. +- ...-.-|+ | +-....+.+.++.|..++++||+|-+-.|+- +..++...++.+.
T Consensus 30 Ari~e-~~Gf~ai~~Sg~~~a~~~lG~PD~-g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG-~~~~v~r~V~~~~ 103 (292)
T PRK11320 30 ALLAE-RAGFKAIYLSGGGVAAASLGLPDL-G---ITTLDDVLIDVRRITDACDLPLLVDIDTGFG-GAFNIARTVKSMI 103 (292)
T ss_pred HHHHH-HcCCCEEEeCHHHHHhHhcCCCCC-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCC-CHHHHHHHHHHHH
Confidence 34454 679999877421 11 00111111 1 2244566777788888889999999999986 6678889999999
Q ss_pred HcCCCEEEEecccc---cCccCCC--cc-HHHHHHHHH---HcC-CCceEEEeCCCCC---HHHHHHHH---hcCCCcCE
Q 005508 491 TWGASAVTVHGRTR---QQRYSKL--AD-WDYIYQCAR---KAS-DDLQVLGNGDIYS---YLDWNKHK---SDCPELAS 554 (693)
Q Consensus 491 eaG~daItVHgRtr---~q~ytg~--Ad-w~~I~~i~~---~~~-~~IPVIgNGdI~s---~eDa~~~l---~~~~gaDg 554 (693)
++||.+|+|-.... .+...+. .. -+++.+|+. ... .++-|++==|.+. .+++.+-. .+ .|||+
T Consensus 104 ~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~e-AGAD~ 182 (292)
T PRK11320 104 KAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVE-AGADM 182 (292)
T ss_pred HcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHH-cCCCE
Confidence 99999999955331 1111111 11 134555543 221 1244445445543 34433211 13 69999
Q ss_pred EEEcHHHhhCCCchhHHHh
Q 005508 555 CMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 555 VMIGRgaL~nPwiF~eIke 573 (693)
|++- .+.++.-+.++.+
T Consensus 183 ifi~--~~~~~~~i~~~~~ 199 (292)
T PRK11320 183 IFPE--AMTELEMYRRFAD 199 (292)
T ss_pred EEec--CCCCHHHHHHHHH
Confidence 9985 2555555555544
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.7 Score=47.19 Aligned_cols=139 Identities=14% Similarity=0.067 Sum_probs=87.3
Q ss_pred hccCCCCeEEEEecCC----CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc
Q 005508 389 RRHSSEDLFGVQICGA----YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD 464 (693)
Q Consensus 389 ~~h~~e~p~gvQL~G~----~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~ 464 (693)
+.-+.+-.+..|+.-. +.....++|+.+. ..|+..+++ ++ + +.++.+++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~-~~G~~~~~~--~~-----------------~----~~~~~i~~~~~ 60 (219)
T cd04729 5 EQLKGGLIVSCQALPGEPLHSPEIMAAMALAAV-QGGAVGIRA--NG-----------------V----EDIRAIRARVD 60 (219)
T ss_pred HHhcCCeEEEccCCCCCCcCcHHHHHHHHHHHH-HCCCeEEEc--CC-----------------H----HHHHHHHHhCC
Confidence 3334445556677633 4567788888776 678888774 11 2 34455555578
Q ss_pred cCEEEEecCCCCCCh---hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHH
Q 005508 465 KPITIKVRTGYFEGK---NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD 541 (693)
Q Consensus 465 iPVtVKiR~G~~d~~---~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eD 541 (693)
+||..-.|.++.+.. ....+.++.+.++|+++|.+..+... ...+....++++.+++.. ++|++. ++.|.++
T Consensus 61 iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~iiv--~v~t~~e 135 (219)
T cd04729 61 LPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLLMA--DISTLEE 135 (219)
T ss_pred CCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeEEE--ECCCHHH
Confidence 999754554442210 01234678889999999988653321 001123456788888765 578876 6889999
Q ss_pred HHHHHhcCCCcCEEEEc
Q 005508 542 WNKHKSDCPELASCMIA 558 (693)
Q Consensus 542 a~~~l~~~~gaDgVMIG 558 (693)
+..+.. .|+|.+.+.
T Consensus 136 a~~a~~--~G~d~i~~~ 150 (219)
T cd04729 136 ALNAAK--LGFDIIGTT 150 (219)
T ss_pred HHHHHH--cCCCEEEcc
Confidence 987665 589998653
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.12 Score=59.03 Aligned_cols=108 Identities=14% Similarity=0.232 Sum_probs=75.2
Q ss_pred ChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEeccc---ccC-----ccCCCccHHH-H
Q 005508 448 KPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRT---RQQ-----RYSKLADWDY-I 517 (693)
Q Consensus 448 rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRt---r~q-----~ytg~Adw~~-I 517 (693)
.++-|.+.|..++++. ..+|+||+-.+.- ...++--+.++|+|.|+|.|-. ... .+.| .-|++ +
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~-----v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~G-iP~e~gl 359 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHG-----VGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAG-IPWELGL 359 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccc-----hHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCC-chHHHHH
Confidence 3677888999998886 5679999987431 1122222788999999998642 211 1222 12443 3
Q ss_pred HHHHHH-----cCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 518 YQCARK-----ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 518 ~~i~~~-----~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
+++.+. +.+.+-|++.|++.|..|+..++. -|||.|-+|+++|.
T Consensus 360 ae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~a--LGAd~v~~gTa~li 408 (485)
T COG0069 360 AETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAA--LGADAVGFGTAALV 408 (485)
T ss_pred HHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHH--hCcchhhhchHHHH
Confidence 333332 123688999999999999999887 59999999999985
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=94.80 E-value=1 Score=48.31 Aligned_cols=130 Identities=9% Similarity=0.130 Sum_probs=79.7
Q ss_pred hCCCcEEEEcC-------CCCCcccccCCccccccCC-----h---HHHHHHHHHhccccccCEEEEecCCCCCChhHHH
Q 005508 419 QCTVDFIDINM-------GCPIDIVVNKGAGSCLLTK-----P---MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 483 (693)
Q Consensus 419 ~aG~D~IDLN~-------GCP~~~v~k~G~GsaLl~r-----p---~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~ 483 (693)
..|+.+|.+-- |-|.+.+.+.. .++++. + ..+.++.+.. ...+.||.|=|.. .+.+++.
T Consensus 34 ~~g~g~v~~kti~~~~~~g~~~pr~~~~~--~~~~n~~g~~~~g~~~~~~~~~~~~-~~~~~p~i~si~g---~~~~~~~ 107 (301)
T PRK07259 34 LNGLGAIVTKSTTLEPREGNPTPRIAETP--GGMLNAIGLQNPGVDAFIEEELPWL-EEFDTPIIANVAG---STEEEYA 107 (301)
T ss_pred hcCCcEEEeCCCCCCCCCCCCCCcEEecC--CceeecCCCCCcCHHHHHHHHHHHH-hccCCcEEEEecc---CCHHHHH
Confidence 46888888842 44554444433 334432 1 2344444433 3347899987753 2457889
Q ss_pred HHHHHHHHcC-CCEEEEecccccC-----ccC--CCccHHHHHHHHHHcCCCceEEE--eCCCCCHHHHHHHHhcCCCcC
Q 005508 484 SLIADIGTWG-ASAVTVHGRTRQQ-----RYS--KLADWDYIYQCARKASDDLQVLG--NGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 484 ~la~~L~eaG-~daItVHgRtr~q-----~yt--g~Adw~~I~~i~~~~~~~IPVIg--NGdI~s~eDa~~~l~~~~gaD 553 (693)
+++++++++| +|+|.|+.-.... .+. ...-++.++.+++.+ ++||+. +.++.+..++.+.+++ .|+|
T Consensus 108 ~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~~~~~a~~l~~-~G~d 184 (301)
T PRK07259 108 EVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTPNVTDIVEIAKAAEE-AGAD 184 (301)
T ss_pred HHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCchhHHHHHHHHHH-cCCC
Confidence 9999999999 9999994322111 111 112366778888877 688886 4455555555566666 7999
Q ss_pred EEEE
Q 005508 554 SCMI 557 (693)
Q Consensus 554 gVMI 557 (693)
+|.+
T Consensus 185 ~i~~ 188 (301)
T PRK07259 185 GLSL 188 (301)
T ss_pred EEEE
Confidence 9854
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.95 Score=48.73 Aligned_cols=200 Identities=17% Similarity=0.110 Sum_probs=120.8
Q ss_pred CcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChh----hhh----hhh--ccCCCCeEEEEec---CCCH
Q 005508 340 EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS----EWA----LLR--RHSSEDLFGVQIC---GAYP 406 (693)
Q Consensus 340 nriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~----e~~----ll~--~h~~e~p~gvQL~---G~~p 406 (693)
+..+++| ++-|.-=-+++.+.|.+.++|--..... ..|.+. .+. .++ ......|+++-+= |+ +
T Consensus 12 ~~~l~~p--~~~Da~SAri~e~aGf~Ai~~sg~~~a~-~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~-~ 87 (285)
T TIGR02317 12 EDILQIP--GAINAMAALLAERAGFEAIYLSGAAVAA-SLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGE-A 87 (285)
T ss_pred CCcEEeC--CCCCHHHHHHHHHcCCCEEEEcHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCC-H
Confidence 4456655 4445544567778898877765443332 223321 111 111 1223568888773 44 8
Q ss_pred HHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCC--CCChhHHH
Q 005508 407 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY--FEGKNRID 483 (693)
Q Consensus 407 e~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~--~d~~~~~~ 483 (693)
..+.+.++.+. ++|+.+|.|-=... ++.+....|..|. .++...+-|++++.+. +.++.|=-|+.. ....++++
T Consensus 88 ~~v~~tv~~~~-~aG~agi~IEDq~~-pK~cgh~~g~~lv-~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI 164 (285)
T TIGR02317 88 FNVARTVREME-DAGAAAVHIEDQVL-PKRCGHLPGKELV-SREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAI 164 (285)
T ss_pred HHHHHHHHHHH-HcCCeEEEEecCCC-ccccCCCCCcccc-CHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHH
Confidence 89999999887 78999999954331 2222222233343 4455555555665544 556766667632 12355777
Q ss_pred HHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEe---CC---CCCHHHHHHHHhcCCCcCEEEE
Q 005508 484 SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGN---GD---IYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 484 ~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgN---Gd---I~s~eDa~~~l~~~~gaDgVMI 557 (693)
+=++...++|+|.|-+++ +.+.+.++++.+.+ ++|+++| |+ ..|.+++.+ -|+..|.+
T Consensus 165 ~Ra~ay~~AGAD~vfi~g---------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~~p~~s~~eL~~-----lGv~~v~~ 228 (285)
T TIGR02317 165 ERAKAYVEAGADMIFPEA---------LTSLEEFRQFAKAV--KVPLLANMTEFGKTPLFTADELRE-----AGYKMVIY 228 (285)
T ss_pred HHHHHHHHcCCCEEEeCC---------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHH-----cCCcEEEE
Confidence 778888999999999986 23456788898888 4787433 33 345555433 58999999
Q ss_pred cHHHh
Q 005508 558 ARGAL 562 (693)
Q Consensus 558 GRgaL 562 (693)
|-.++
T Consensus 229 ~~~~~ 233 (285)
T TIGR02317 229 PVTAF 233 (285)
T ss_pred chHHH
Confidence 95554
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.62 Score=49.43 Aligned_cols=155 Identities=16% Similarity=0.227 Sum_probs=88.1
Q ss_pred CCCCCcHHHHHHHHHcCCCEEEe-cccccchhccCChhhhh-----------hhhccCCCCeEEEEe-c---CCCHHHHH
Q 005508 347 LTTVGNLPFRRVCKVLGADVTCG-EMAMCTNLLQGQASEWA-----------LLRRHSSEDLFGVQI-C---GAYPDTLA 410 (693)
Q Consensus 347 Mt~v~dlpFRrl~~~~Gadl~~T-EM~~a~~ll~g~~~e~~-----------ll~~h~~e~p~gvQL-~---G~~pe~~~ 410 (693)
|.|.-|.||-+++.+.|+|++.- -.+.-. +.|..++.. -+++-.....+++-+ + ..++++..
T Consensus 20 ~lTaYD~~~A~~~d~agvD~iLVGDSlgmv--~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av 97 (261)
T PF02548_consen 20 MLTAYDYPSARIADEAGVDIILVGDSLGMV--VLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAV 97 (261)
T ss_dssp EEE--SHHHHHHHHHTT-SEEEE-TTHHHH--TT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHH
T ss_pred EEecccHHHHHHHHHcCCCEEEeCCcHHHh--eeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHH
Confidence 44556899999999999998743 322221 234333221 123333344444444 1 24677777
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC---------CCC-----
Q 005508 411 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT---------GYF----- 476 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~---------G~~----- 476 (693)
+.|.++.+++|+|.|-|-.|. ...++|+++.+ .+|||.-=|-+ |+.
T Consensus 98 ~nA~rl~ke~GadaVKlEGg~-------------------~~~~~i~~l~~-~GIPV~gHiGLtPQ~~~~~GGyr~qGk~ 157 (261)
T PF02548_consen 98 RNAGRLMKEAGADAVKLEGGA-------------------EIAETIKALVD-AGIPVMGHIGLTPQSVHQLGGYRVQGKT 157 (261)
T ss_dssp HHHHHHHHTTT-SEEEEEBSG-------------------GGHHHHHHHHH-TT--EEEEEES-GGGHHHHTSS--CSTS
T ss_pred HHHHHHHHhcCCCEEEeccch-------------------hHHHHHHHHHH-CCCcEEEEecCchhheeccCCceEEecC
Confidence 777777657999999995321 12344555533 27898866533 221
Q ss_pred -CChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCC
Q 005508 477 -EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD 535 (693)
Q Consensus 477 -d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGd 535 (693)
+......+-|+.|+++|+-+|.+-. .-.+..+.|.+.+ +||+||-|.
T Consensus 158 ~~~a~~l~~~A~ale~AGaf~ivlE~----------vp~~la~~It~~l--~IPtIGIGa 205 (261)
T PF02548_consen 158 AEEAEKLLEDAKALEEAGAFAIVLEC----------VPAELAKAITEAL--SIPTIGIGA 205 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT-SEEEEES----------BBHHHHHHHHHHS--SS-EEEESS
T ss_pred HHHHHHHHHHHHHHHHcCccEEeeec----------CHHHHHHHHHHhC--CCCEEecCC
Confidence 1123566778889999999999863 2246778899998 799998873
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=94.76 E-value=3.4 Score=44.71 Aligned_cols=204 Identities=12% Similarity=0.060 Sum_probs=115.8
Q ss_pred CcEEEccCCCCCcHHHHHHHHHcCCCEEEe-cccccch-hccCC--hhhhh-hh---h--ccCCCCeEEEEec---CCCH
Q 005508 340 EKLYLAPLTTVGNLPFRRVCKVLGADVTCG-EMAMCTN-LLQGQ--ASEWA-LL---R--RHSSEDLFGVQIC---GAYP 406 (693)
Q Consensus 340 nriiLAPMt~v~dlpFRrl~~~~Gadl~~T-EM~~a~~-ll~g~--~~e~~-ll---~--~h~~e~p~gvQL~---G~~p 406 (693)
+.++++| ++-|..=-+++.+.|.+.+++ -...+.. +.... .-.+. ++ + ....+.|+++-+= |+.+
T Consensus 15 ~~~l~~p--~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVP--SAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEee--cCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH
Confidence 3455544 555766667788889988875 3222211 21111 11111 11 1 2234678888773 5555
Q ss_pred HHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCC--CCChhHHH
Q 005508 407 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY--FEGKNRID 483 (693)
Q Consensus 407 e~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~--~d~~~~~~ 483 (693)
+ ..+.++.+. .+|+.+|.|-=..- ++.+..-.|-.|. ..+...+=|++++++. +.++.|=-|+.. ....++++
T Consensus 93 ~-v~r~V~~~~-~aGaagi~IEDq~~-pK~cg~~~~k~lv-~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI 168 (294)
T TIGR02319 93 S-VWRATREFE-RVGIVGYHLEDQVN-PKRCGHLEGKRLI-STEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAI 168 (294)
T ss_pred H-HHHHHHHHH-HcCCeEEEEECCCC-ccccCCCCCcccc-CHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHH
Confidence 5 678888887 68999999953321 1222111233344 4444444445555443 445666667632 12445677
Q ss_pred HHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceE---EEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 484 SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQV---LGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 484 ~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPV---IgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+=++...++|+|.|-+|+ +.+.+.|+++.+.++ .|+ +..|+-.-.-.+.++ .+ -|+..|.++-.
T Consensus 169 ~Ra~aY~eAGAD~ifi~~---------~~~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~eL-~~-lG~~~v~~~~~ 235 (294)
T TIGR02319 169 RRSREYVAAGADCIFLEA---------MLDVEEMKRVRDEID--APLLANMVEGGKTPWLTTKEL-ES-IGYNLAIYPLS 235 (294)
T ss_pred HHHHHHHHhCCCEEEecC---------CCCHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHHH-HH-cCCcEEEEcHH
Confidence 778888999999999985 234577888988874 565 334432222233342 33 58999999855
Q ss_pred Hh
Q 005508 561 AL 562 (693)
Q Consensus 561 aL 562 (693)
++
T Consensus 236 ~~ 237 (294)
T TIGR02319 236 GW 237 (294)
T ss_pred HH
Confidence 54
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.1 Score=47.54 Aligned_cols=147 Identities=10% Similarity=0.021 Sum_probs=90.2
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhhhCCCcEE--EEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 395 DLFGVQICGAYPDTLARTVELIDQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 395 ~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~I--DLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
.++.++|...+...+.+..+.++ ..|+|.| ||-=|.=+++. .+| -++|++++. ++|+-|=+=
T Consensus 20 ~~IspSil~aD~~~L~~el~~l~-~~g~d~lHiDVMDG~FVPNi---tfG----------p~~i~~i~~--~~p~DvHLM 83 (254)
T PRK14057 20 YPLSVGILAGQWIALHRYLQQLE-ALNQPLLHLDLMDGQFCPQF---TVG----------PWAVGQLPQ--TFIKDVHLM 83 (254)
T ss_pred CceEeehhhcCHHHHHHHHHHHH-HCCCCEEEEeccCCccCCcc---ccC----------HHHHHHhcc--CCCeeEEee
Confidence 46788999999999999999997 5788874 55334433332 223 244555554 456555333
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCEEEEeccc-----------ccCc----------------------------------
Q 005508 473 TGYFEGKNRIDSLIADIGTWGASAVTVHGRT-----------RQQR---------------------------------- 507 (693)
Q Consensus 473 ~G~~d~~~~~~~la~~L~eaG~daItVHgRt-----------r~q~---------------------------------- 507 (693)
. .+...+++.+.++|++.|++|.-. ++..
T Consensus 84 V------~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~ 157 (254)
T PRK14057 84 V------ADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEV 157 (254)
T ss_pred e------CCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCE
Confidence 2 124567788888888888888531 1111
Q ss_pred ---------cCCCc----cHHHHHHHHHHcC---CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 508 ---------YSKLA----DWDYIYQCARKAS---DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 508 ---------ytg~A----dw~~I~~i~~~~~---~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
+.|.. -++-|+++++... .++-|-.-|+| +.+.+..+.+ .|||.+.+|+++..++.
T Consensus 158 VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~--aGad~~V~GSalF~~~d 229 (254)
T PRK14057 158 IQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIA--QGIDRVVSGSALFRDDR 229 (254)
T ss_pred EEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH--CCCCEEEEChHhhCCCC
Confidence 11100 0123333333221 13668899999 6678877665 69999999998765544
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.35 Score=51.99 Aligned_cols=151 Identities=12% Similarity=0.117 Sum_probs=87.3
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccc--cCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHH
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVV--NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 490 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~--k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ 490 (693)
|++++ .+||++|=+-..+ +.... -|+ .++ ....+.+.++.|..++++||+|-+-.|+-+ ..++...++.+.
T Consensus 26 Ari~e-~aGf~Ai~~sg~~-~a~~lG~pD~---g~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~-~~~v~~tv~~~~ 98 (285)
T TIGR02317 26 ALLAE-RAGFEAIYLSGAA-VAASLGLPDL---GIT-TLDEVAEDARRITRVTDLPLLVDADTGFGE-AFNVARTVREME 98 (285)
T ss_pred HHHHH-HcCCCEEEEcHHH-HHHhCCCCCC---CCC-CHHHHHHHHHHHHhccCCCEEEECCCCCCC-HHHHHHHHHHHH
Confidence 34444 6799999885322 11111 121 123 455667777888888899999999999866 677788999999
Q ss_pred HcCCCEEEEeccccc---CccCCC--cc-HHHHHHHHH---HcCC-CceEEEeCCCCC---HHHHHHHH---hcCCCcCE
Q 005508 491 TWGASAVTVHGRTRQ---QRYSKL--AD-WDYIYQCAR---KASD-DLQVLGNGDIYS---YLDWNKHK---SDCPELAS 554 (693)
Q Consensus 491 eaG~daItVHgRtr~---q~ytg~--Ad-w~~I~~i~~---~~~~-~IPVIgNGdI~s---~eDa~~~l---~~~~gaDg 554 (693)
++||.+|+|-..+.. ..+.+. .. -+++.+|+. +... ++-|++==|.+. .+++.+-. .+ .|||+
T Consensus 99 ~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~-AGAD~ 177 (285)
T TIGR02317 99 DAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVE-AGADM 177 (285)
T ss_pred HcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHH-cCCCE
Confidence 999999999654311 111111 11 134555443 3221 233444444443 34443211 13 59999
Q ss_pred EEEcHHHhhCCCchhHHHh
Q 005508 555 CMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 555 VMIGRgaL~nPwiF~eIke 573 (693)
|+|- .+.++....++.+
T Consensus 178 vfi~--g~~~~e~i~~~~~ 194 (285)
T TIGR02317 178 IFPE--ALTSLEEFRQFAK 194 (285)
T ss_pred EEeC--CCCCHHHHHHHHH
Confidence 9984 2444444444444
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.66 Score=51.79 Aligned_cols=125 Identities=10% Similarity=0.030 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhH
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 404 ~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~ 481 (693)
.+++.+.+.|+.+. ..||..|-|..| -.+++.-.+.|+++++.+ ++.|.|-.-.+|+ ..+
T Consensus 159 ~~~~~~~~~a~~~~-~~Gf~~~Kikvg---------------~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~--~~~ 220 (385)
T cd03326 159 DDLGRLRDEMRRYL-DRGYTVVKIKIG---------------GAPLDEDLRRIEAALDVLGDGARLAVDANGRFD--LET 220 (385)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEeCC---------------CCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCC--HHH
Confidence 35677766666555 459999999654 023455578888888887 5677776666774 578
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc----CEEEE
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL----ASCMI 557 (693)
Q Consensus 482 ~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga----DgVMI 557 (693)
+.++++.|++.++.+| +|-. .+.|++-.+++++.+ ++||.+.=.+++..++..++.. ..+ |.|++
T Consensus 221 A~~~~~~l~~~~~~~i-------EeP~-~~~d~~~~~~L~~~~--~iPIa~gEs~~~~~~~~~li~~-~a~~~~~div~~ 289 (385)
T cd03326 221 AIAYAKALAPYGLRWY-------EEPG-DPLDYALQAELADHY--DGPIATGENLFSLQDARNLLRY-GGMRPDRDVLQF 289 (385)
T ss_pred HHHHHHHhhCcCCCEE-------ECCC-CccCHHHHHHHHhhC--CCCEEcCCCcCCHHHHHHHHHh-CCccccCCEEEe
Confidence 9999999999998877 3332 345788899999988 6999998899999999998875 444 77763
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.0095 Score=63.00 Aligned_cols=31 Identities=35% Similarity=0.669 Sum_probs=25.8
Q ss_pred ccccCChhhhccCCCCCCCCCCCCCCCCChhhhhh
Q 005508 99 SASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKA 133 (693)
Q Consensus 99 ~~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~~yl~ 133 (693)
-+.-+|..|-.+ .|.-|++|+||||+..-..
T Consensus 90 PKSvvCafFk~g----~C~KG~kCKFsHdl~~~~k 120 (343)
T KOG1763|consen 90 PKSVVCAFFKQG----TCTKGDKCKFSHDLAVERK 120 (343)
T ss_pred chHHHHHHHhcc----CCCCCCcccccchHHHhhh
Confidence 456789999987 6999999999999875433
|
|
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.85 Score=50.31 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=91.4
Q ss_pred EEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCC
Q 005508 397 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTG 474 (693)
Q Consensus 397 ~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G 474 (693)
+-..+.+.+++.+.+.++.+. ..||..|-|-. .+.|+++++.+ ++.|.|-..-+
T Consensus 118 ~ya~~~~~~~~~~~~~a~~~~-~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN~~ 173 (361)
T cd03322 118 VYSHASGRDIPELLEAVERHL-AQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVHHR 173 (361)
T ss_pred EEEeCCCCCHHHHHHHHHHHH-HcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECCCC
Confidence 333344566777766666554 35999988742 56788888887 45676666656
Q ss_pred CCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCE
Q 005508 475 YFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 554 (693)
Q Consensus 475 ~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDg 554 (693)
|+ .+++..+++.|++.++.+| +|-. .+-+++..+++++.. ++||.+.=.++++.++..++.. ..+|.
T Consensus 174 w~--~~~A~~~~~~l~~~~l~~i-------EeP~-~~~d~~~~~~L~~~~--~~pia~gE~~~~~~~~~~~i~~-~a~di 240 (361)
T cd03322 174 LT--PNQAARFGKDVEPYRLFWM-------EDPT-PAENQEAFRLIRQHT--ATPLAVGEVFNSIWDWQNLIQE-RLIDY 240 (361)
T ss_pred CC--HHHHHHHHHHhhhcCCCEE-------ECCC-CcccHHHHHHHHhcC--CCCEEeccCCcCHHHHHHHHHh-CCCCE
Confidence 64 4689999999999988877 3333 345788899999987 6999887778999999998886 67888
Q ss_pred EEE
Q 005508 555 CMI 557 (693)
Q Consensus 555 VMI 557 (693)
|.+
T Consensus 241 ~~~ 243 (361)
T cd03322 241 IRT 243 (361)
T ss_pred Eec
Confidence 764
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.73 Score=49.19 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHhhhC-CCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhH
Q 005508 405 YPDTLARTVELIDQQC-TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~a-G~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~ 481 (693)
|.+.+.+-++.+. .. |+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+
T Consensus 19 D~~~~~~~i~~l~-~~~Gv~gi~~~G----------stGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~---~~~~~ 84 (288)
T cd00954 19 NEDVLRAIVDYLI-EKQGVDGLYVNG----------STGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS---LNLKE 84 (288)
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC---CCHHH
Confidence 6788888888887 46 999998863 122222223444445555554444 4688875543 24578
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcCEE
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELASC 555 (693)
Q Consensus 482 ~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaDgV 555 (693)
+.++++.++++|+++|.+..=.- ..++...-++|...|.+.++ ++||| ..|--.+++.+.++.+ ...+-|+
T Consensus 85 ai~~a~~a~~~Gad~v~~~~P~y-~~~~~~~i~~~~~~v~~a~~-~lpi~iYn~P~~tg~~l~~~~~~~L~~-~pnivgi 161 (288)
T cd00954 85 SQELAKHAEELGYDAISAITPFY-YKFSFEEIKDYYREIIAAAA-SLPMIIYHIPALTGVNLTLEQFLELFE-IPNVIGV 161 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCC-CCCCHHHHHHHHHHHHHhcC-CCCEEEEeCccccCCCCCHHHHHHHhc-CCCEEEE
Confidence 99999999999999998864211 01122234678888888874 47776 2465667887777654 3444444
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.65 Score=49.80 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
|.+.+.+-++.+. ..|+|+|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+ |. ...++
T Consensus 24 D~~~l~~li~~l~-~~Gv~gi~v~G----------stGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~~--~t~~a 88 (296)
T TIGR03249 24 DEAAYRENIEWLL-GYGLEALFAAG----------GTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV--GG--NTSDA 88 (296)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECC----------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--Cc--cHHHH
Confidence 6788888888887 57999998873 223333334444455555555544 57888865 42 36789
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCC---CccHHHHHHHHHHcCCCceEE-Ee--CCCCCHHHHHHHHhcCCCcCEEE
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSK---LADWDYIYQCARKASDDLQVL-GN--GDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg---~Adw~~I~~i~~~~~~~IPVI-gN--GdI~s~eDa~~~l~~~~gaDgVM 556 (693)
+++++.+++.|+|++.+..- .|.. ..-.+|...|.+++ ++||| .| |--.+++.+.++..++.++-||=
T Consensus 89 i~~a~~a~~~Gadav~~~pP----~y~~~s~~~i~~~f~~v~~a~--~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiK 162 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLPP----YLINGEQEGLYAHVEAVCEST--DLGVIVYQRDNAVLNADTLERLADRCPNLVGFK 162 (296)
T ss_pred HHHHHHHHHhCCCEEEECCC----CCCCCCHHHHHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEE
Confidence 99999999999999988642 2322 23467888898887 58865 33 43457888887665346666654
Q ss_pred Ec
Q 005508 557 IA 558 (693)
Q Consensus 557 IG 558 (693)
-+
T Consensus 163 ds 164 (296)
T TIGR03249 163 DG 164 (296)
T ss_pred eC
Confidence 43
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.65 Score=50.03 Aligned_cols=131 Identities=14% Similarity=0.159 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
+.+.+.+-++.+. ..|+|+|=+|. ..|-...-..+.-.++++.+.+.+ .+||.+-+ | . +..++
T Consensus 26 D~~~l~~li~~l~-~~Gv~Gi~~~G----------stGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv--~-~-~t~~~ 90 (303)
T PRK03620 26 DEAAYREHLEWLA-PYGAAALFAAG----------GTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA--G-G-GTAQA 90 (303)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--C-C-CHHHH
Confidence 6778888888887 57999998874 233333334444455566555544 57888865 3 2 56789
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCC---ccHHHHHHHHHHcCCCceEEE-e--CCCCCHHHHHHHHhcCCCcCEEE
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLG-N--GDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~---Adw~~I~~i~~~~~~~IPVIg-N--GdI~s~eDa~~~l~~~~gaDgVM 556 (693)
+++++.++++|+++|.+..- .|..+ .-.+|+..+++.+ ++||+. | |=-.+++.+.++.+++..+-||=
T Consensus 91 i~~~~~a~~~Gadav~~~pP----~y~~~~~~~i~~~f~~va~~~--~lpi~lYn~~g~~l~~~~l~~L~~~~pni~giK 164 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPP----YLTEAPQEGLAAHVEAVCKST--DLGVIVYNRDNAVLTADTLARLAERCPNLVGFK 164 (303)
T ss_pred HHHHHHHHHhCCCEEEECCC----CCCCCCHHHHHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEEE
Confidence 99999999999999988542 23222 2367888888887 588662 2 32346777777652445555553
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.49 Score=49.57 Aligned_cols=195 Identities=21% Similarity=0.190 Sum_probs=115.7
Q ss_pred CcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccchhccCChh----hhh-h---hh--ccCCCCeEEEEe---cCCCH
Q 005508 340 EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS----EWA-L---LR--RHSSEDLFGVQI---CGAYP 406 (693)
Q Consensus 340 nriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~----e~~-l---l~--~h~~e~p~gvQL---~G~~p 406 (693)
++++++| ++-|..=-+++.+.|++.++|--.....-+ |.+. ++. + ++ .....-|+++-+ +|+++
T Consensus 8 ~~~l~~p--~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~-G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~ 84 (238)
T PF13714_consen 8 GKPLVLP--NVWDALSARLAERAGFDAIATSGAGVAASL-GYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDP 84 (238)
T ss_dssp SSSEEEE--EESSHHHHHHHHHTT-SEEEEHHHHHHHHT-TS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSH
T ss_pred CCcEEeC--CCcCHHHHHHHHHcCCCEEEechHHHHHHc-CCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchh
Confidence 3455555 444665667788889887766433222211 4322 111 1 11 112367888887 36669
Q ss_pred HHHHHHHHHHhhhCCCcEEEEcCC-CCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCC----CCChh
Q 005508 407 DTLARTVELIDQQCTVDFIDINMG-CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY----FEGKN 480 (693)
Q Consensus 407 e~~~~AA~~~~~~aG~D~IDLN~G-CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~----~d~~~ 480 (693)
..+.+.++.+. .+|+.+|.|.=. |- . .|..|+ .++.+.+=|++++++. +..+.|=-|+.. ....+
T Consensus 85 ~~v~~tv~~~~-~aG~agi~IEDq~~~------~-~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~d 155 (238)
T PF13714_consen 85 ENVARTVRELE-RAGAAGINIEDQRCG------H-GGKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLD 155 (238)
T ss_dssp HHHHHHHHHHH-HCT-SEEEEESBSTT------T-STT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCcEEEeeccccC------C-CCCcee-CHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHH
Confidence 99999999998 789999999754 22 1 344555 5555555556665544 334555557632 12335
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCC--CCCHHHHHHHHhcCCCcCEEEEc
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD--IYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGd--I~s~eDa~~~l~~~~gaDgVMIG 558 (693)
++++=++...++|+|+|-+++- .+-+-++++.+.+ ++|+..+-. -.|.+++.+ -|+..|.+|
T Consensus 156 eaI~R~~aY~eAGAD~ifi~~~---------~~~~~i~~~~~~~--~~Pl~v~~~~~~~~~~eL~~-----lGv~~v~~~ 219 (238)
T PF13714_consen 156 EAIERAKAYAEAGADMIFIPGL---------QSEEEIERIVKAV--DGPLNVNPGPGTLSAEELAE-----LGVKRVSYG 219 (238)
T ss_dssp HHHHHHHHHHHTT-SEEEETTS---------SSHHHHHHHHHHH--SSEEEEETTSSSS-HHHHHH-----TTESEEEET
T ss_pred HHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHHHhc--CCCEEEEcCCCCCCHHHHHH-----CCCcEEEEc
Confidence 6777777788999999999865 3345688888888 588877653 234444333 589999988
Q ss_pred HHHh
Q 005508 559 RGAL 562 (693)
Q Consensus 559 RgaL 562 (693)
-.++
T Consensus 220 ~~~~ 223 (238)
T PF13714_consen 220 NSLL 223 (238)
T ss_dssp SHHH
T ss_pred HHHH
Confidence 6554
|
... |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.63 Score=49.61 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
+.+.+.+-++.+. ..|+++|=+|. ..|-...-..+.-.++++.+.+.+ .+||.+-+-. .+..++
T Consensus 20 D~~~l~~~i~~l~-~~Gv~gi~~~G----------s~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~---~~~~~~ 85 (292)
T PRK03170 20 DFAALRKLVDYLI-ANGTDGLVVVG----------TTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS---NSTAEA 85 (292)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECC----------cCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC---chHHHH
Confidence 6788888888887 57999998874 223223333444445555554444 4788875443 245789
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCC---ccHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcC
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~---Adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaD 553 (693)
+++++.++++|+++|.+..- .|..+ .-.+|..++.+.+ ++||+ ..|--.+++.+.++. +++.+-
T Consensus 86 i~~a~~a~~~G~d~v~~~pP----~~~~~~~~~i~~~~~~ia~~~--~~pv~lYn~P~~~g~~l~~~~~~~L~-~~p~v~ 158 (292)
T PRK03170 86 IELTKFAEKAGADGALVVTP----YYNKPTQEGLYQHFKAIAEAT--DLPIILYNVPGRTGVDILPETVARLA-EHPNIV 158 (292)
T ss_pred HHHHHHHHHcCCCEEEECCC----cCCCCCHHHHHHHHHHHHhcC--CCCEEEEECccccCCCCCHHHHHHHH-cCCCEE
Confidence 99999999999999998642 22222 2356778888776 57766 246566777777764 335555
Q ss_pred EEE
Q 005508 554 SCM 556 (693)
Q Consensus 554 gVM 556 (693)
|+=
T Consensus 159 giK 161 (292)
T PRK03170 159 GIK 161 (292)
T ss_pred EEE
Confidence 553
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=2.2 Score=43.70 Aligned_cols=146 Identities=9% Similarity=0.038 Sum_probs=83.6
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcc-----cccC----CccccccCChHHHHHHHHHhccccccC
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI-----VVNK----GAGSCLLTKPMRMKGIIEATSGTVDKP 466 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~-----v~k~----G~GsaLl~rp~~l~eIV~av~~~v~iP 466 (693)
+++.=|.+.++++..+.++.+. +.|+..|||.+--|... +.++ -.|++-.-+++.+.+.+++ +--
T Consensus 5 ~vv~Vir~~~~~~a~~ia~al~-~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a-----GA~ 78 (201)
T PRK06015 5 PVIPVLLIDDVEHAVPLARALA-AGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA-----GSR 78 (201)
T ss_pred CEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc-----CCC
Confidence 4555678899999999999988 68999999987655311 1000 0122222233333333322 111
Q ss_pred EEEEecCCCCCChhHHHHHH-----------------HHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCce
Q 005508 467 ITIKVRTGYFEGKNRIDSLI-----------------ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ 529 (693)
Q Consensus 467 VtVKiR~G~~d~~~~~~~la-----------------~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IP 529 (693)
+.| .++++ ++..+.+ ....++|++.|-+..-+ .+. --.||+.++.-+| ++|
T Consensus 79 Fiv--SP~~~---~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~---~~G---G~~yikal~~plp-~~~ 146 (201)
T PRK06015 79 FIV--SPGTT---QELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAE---QAG---GAAFLKALSSPLA-GTF 146 (201)
T ss_pred EEE--CCCCC---HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCch---hhC---CHHHHHHHHhhCC-CCc
Confidence 222 22221 1111111 12345677777666421 111 2478999999888 799
Q ss_pred EEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 530 VLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 530 VIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
++..||| +.+.+.+++.. |+..+..|..+.
T Consensus 147 l~ptGGV-~~~n~~~~l~a--g~~~~~ggs~l~ 176 (201)
T PRK06015 147 FCPTGGI-SLKNARDYLSL--PNVVCVGGSWVA 176 (201)
T ss_pred EEecCCC-CHHHHHHHHhC--CCeEEEEchhhC
Confidence 9999999 66888888874 444555554433
|
|
| >KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.018 Score=63.23 Aligned_cols=27 Identities=33% Similarity=0.788 Sum_probs=22.1
Q ss_pred ccccCChhhhccCCCCCCCCCCCCCCCCChh
Q 005508 99 SASHLCPEVAKSGDVSSCPYKDKCRFSHDLD 129 (693)
Q Consensus 99 ~~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~ 129 (693)
.....|++|+.+ .|+||++|||||...
T Consensus 138 ~sMkpC~ffLeg----~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 138 ESMKPCKFFLEG----RCRFGENCRFSHGLD 164 (486)
T ss_pred hhhccchHhhcc----ccccCcccccccCcc
Confidence 567889999887 599999999999654
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.2 Score=48.06 Aligned_cols=132 Identities=20% Similarity=0.178 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhH
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 404 ~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~ 481 (693)
-|.+.+.+.++.+. ..|+|+|=++. ..|-...-..+.-.++++.+++++ .+||.+-+.. .+..+
T Consensus 22 vD~~a~~~lv~~li-~~Gv~gi~~~G----------ttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~---~~t~e 87 (299)
T COG0329 22 VDEEALRRLVEFLI-AAGVDGLVVLG----------TTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS---NSTAE 87 (299)
T ss_pred cCHHHHHHHHHHHH-HcCCCEEEECC----------CCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC---CcHHH
Confidence 36788888888887 57999998874 223333344555566677777766 4788885544 34678
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCccCCCc---cHHHHHHHHHHcCCCceEE-Ee-----CCCCCHHHHHHHHhcCCCc
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRYSKLA---DWDYIYQCARKASDDLQVL-GN-----GDIYSYLDWNKHKSDCPEL 552 (693)
Q Consensus 482 ~~~la~~L~eaG~daItVHgRtr~q~ytg~A---dw~~I~~i~~~~~~~IPVI-gN-----GdI~s~eDa~~~l~~~~ga 552 (693)
+.++++.+++.|+|+|-+..- .|.++. -+++++.+++.+ ++||| .| |--.+++.+.++.. ...+
T Consensus 88 ai~lak~a~~~Gad~il~v~P----yY~k~~~~gl~~hf~~ia~a~--~lPvilYN~P~~tg~~l~~e~i~~la~-~~ni 160 (299)
T COG0329 88 AIELAKHAEKLGADGILVVPP----YYNKPSQEGLYAHFKAIAEAV--DLPVILYNIPSRTGVDLSPETIARLAE-HPNI 160 (299)
T ss_pred HHHHHHHHHhcCCCEEEEeCC----CCcCCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCCCCHHHHHHHhc-CCCE
Confidence 999999999999999998743 333332 356778888887 67765 55 66677888777554 3555
Q ss_pred CEEE
Q 005508 553 ASCM 556 (693)
Q Consensus 553 DgVM 556 (693)
-||=
T Consensus 161 vgiK 164 (299)
T COG0329 161 VGVK 164 (299)
T ss_pred EEEE
Confidence 5553
|
|
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.68 Score=51.82 Aligned_cols=122 Identities=7% Similarity=0.033 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRID 483 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~ 483 (693)
+++.+.+.++.+....||..|-|..|- .+++.-.+.|+++++++ ++.|.|-.-.+|+ ..++.
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~--~~~A~ 230 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWS--LETAI 230 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcC--HHHHH
Confidence 678777766655433599999996431 23455567888888877 4555555555663 57899
Q ss_pred HHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 484 SLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 484 ~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
++++.|++ ++.+| +|-.. +++..+++++.. ++||.+.=.++++.++.+++.. ..+|.+++
T Consensus 231 ~~~~~l~~-~l~~i-------EeP~~---d~~~~~~L~~~~--~~PIa~dEs~~~~~~~~~~i~~-~avdil~~ 290 (395)
T cd03323 231 RLAKELEG-VLAYL-------EDPCG---GREGMAEFRRAT--GLPLATNMIVTDFRQLGHAIQL-NAVDIPLA 290 (395)
T ss_pred HHHHhcCc-CCCEE-------ECCCC---CHHHHHHHHHhc--CCCEEcCCcccCHHHHHHHHHc-CCCcEEee
Confidence 99999988 87765 33332 888889999988 6999887788999999998886 67888853
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.1 Score=49.84 Aligned_cols=142 Identities=10% Similarity=0.072 Sum_probs=100.7
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecC
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT 473 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~ 473 (693)
++...+.+.+++.+.+.++.+. ..||..+-|..|=+.... ++ ..+++.-.+.|+++++.+ ++.|.|-.--
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~-~~Gf~~~KiKv~~~~~~~--~~-----~~~~~~d~~~i~avr~~~g~~~~l~vDaN~ 186 (382)
T PRK14017 115 RVYSWIGGDRPADVAEAARARV-ERGFTAVKMNGTEELQYI--DS-----PRKVDAAVARVAAVREAVGPEIGIGVDFHG 186 (382)
T ss_pred eEeEeCCCCCHHHHHHHHHHHH-HcCCCEEEEcCcCCcccc--cc-----HHHHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 4444455678888876666665 459999999653111000 00 123566678889999887 4666666665
Q ss_pred CCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 474 G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 553 (693)
+|+ ..++..+++.|++.|+..|- |-. ...+++..+++++.. .+||.+.=.++++.++..++.. ..+|
T Consensus 187 ~w~--~~~A~~~~~~l~~~~~~~iE-------eP~-~~~d~~~~~~L~~~~--~~pIa~dEs~~~~~~~~~li~~-~a~d 253 (382)
T PRK14017 187 RVH--KPMAKVLAKELEPYRPMFIE-------EPV-LPENAEALPEIAAQT--SIPIATGERLFSRWDFKRVLEA-GGVD 253 (382)
T ss_pred CCC--HHHHHHHHHhhcccCCCeEE-------CCC-CcCCHHHHHHHHhcC--CCCEEeCCccCCHHHHHHHHHc-CCCC
Confidence 664 46799999999999888773 332 345788889999887 6999998899999999998886 6788
Q ss_pred EEEEc
Q 005508 554 SCMIA 558 (693)
Q Consensus 554 gVMIG 558 (693)
.|.+-
T Consensus 254 ~v~~d 258 (382)
T PRK14017 254 IIQPD 258 (382)
T ss_pred eEecC
Confidence 88753
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.37 E-value=1 Score=48.47 Aligned_cols=150 Identities=11% Similarity=0.028 Sum_probs=98.6
Q ss_pred CCCeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe
Q 005508 393 SEDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 393 ~e~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi 471 (693)
...|+.+.|=+. +.+...+|. .+||+.|-+- |.--.+.++.+...++++.... .+++|-.=+
T Consensus 73 ~~vPV~lHLDH~~~~e~i~~Ai-----~~GftSVM~D-----------gS~l~~eeNi~~T~~vve~Ah~-~gv~VEaEl 135 (283)
T PRK07998 73 MDVPVSLHLDHGKTFEDVKQAV-----RAGFTSVMID-----------GAALPFEENIAFTKEAVDFAKS-YGVPVEAEL 135 (283)
T ss_pred CCCCEEEECcCCCCHHHHHHHH-----HcCCCEEEEe-----------CCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEe
Confidence 345777777443 444444432 3578877773 3222344566677777776653 466664443
Q ss_pred c-C-CCCCC-------hhHHHHHHHHHHHcCCCEEEEecccccCccCCC-ccHHHHHHHHHHcCCCceEEEeCCCCCH-H
Q 005508 472 R-T-GYFEG-------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL-ADWDYIYQCARKASDDLQVLGNGDIYSY-L 540 (693)
Q Consensus 472 R-~-G~~d~-------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~-Adw~~I~~i~~~~~~~IPVIgNGdI~s~-e 540 (693)
. + |..+. -.+..+..+.+++.|+|+|.+.-+|..+.|.++ .||+.+++|++.+ ++|++.-|+=-.+ +
T Consensus 136 G~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e 213 (283)
T PRK07998 136 GAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPE 213 (283)
T ss_pred ccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHH
Confidence 2 1 22111 124455566677899999988877777778653 4789999999998 7999988877666 5
Q ss_pred HHHHHHhcCCCcCEEEEcHHHhh
Q 005508 541 DWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 541 Da~~~l~~~~gaDgVMIGRgaL~ 563 (693)
++.+++. .|+.-|=|++.+..
T Consensus 214 ~~~~ai~--~Gi~KiNi~Tel~~ 234 (283)
T PRK07998 214 ILRSFVN--YKVAKVNIASDLRK 234 (283)
T ss_pred HHHHHHH--cCCcEEEECHHHHH
Confidence 5666665 68999999988754
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.22 Score=52.43 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
.+..++|+.++++|+++|.|-. +..|-+ -+++++.++++.+ ++||+..+-|.++..+.+... .|||+|++==
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlT---e~~~F~-Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~--~GADavLLI~ 132 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLT---DQSYFG-GSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARA--FGASAILLIV 132 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEc---CCCcCC-CCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHH--cCCCEEEeEH
Confidence 4678999999999999998863 333322 4789999999998 799999999999999999876 6999997766
Q ss_pred HHhh
Q 005508 560 GALI 563 (693)
Q Consensus 560 gaL~ 563 (693)
.+|.
T Consensus 133 ~~L~ 136 (247)
T PRK13957 133 RILT 136 (247)
T ss_pred hhCC
Confidence 6664
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.34 E-value=1 Score=48.08 Aligned_cols=100 Identities=6% Similarity=0.119 Sum_probs=65.0
Q ss_pred HHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccC-----ccCCCc--cHHHHHHHHHH
Q 005508 451 RMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQ-----RYSKLA--DWDYIYQCARK 523 (693)
Q Consensus 451 ~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q-----~ytg~A--dw~~I~~i~~~ 523 (693)
.+.++.+ .+...+.||.|=++.. +.+++.+.+++++++|+|+|.||-.+..- .|.... -.+.++.+++.
T Consensus 77 ~~~~~~~-~~~~~~~p~ivsi~g~---~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~ 152 (296)
T cd04740 77 FLEELLP-WLREFGTPVIASIAGS---TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA 152 (296)
T ss_pred HHHHHHH-HhhcCCCcEEEEEecC---CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc
Confidence 3444433 3344578999977642 35678999999999999999998654321 111111 23567777777
Q ss_pred cCCCceEE--EeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 524 ASDDLQVL--GNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 524 ~~~~IPVI--gNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
+ ++||+ .+.++.+..++.+.+.+ .|||+|.+
T Consensus 153 ~--~~Pv~vKl~~~~~~~~~~a~~~~~-~G~d~i~~ 185 (296)
T cd04740 153 T--DVPVIVKLTPNVTDIVEIARAAEE-AGADGLTL 185 (296)
T ss_pred c--CCCEEEEeCCCchhHHHHHHHHHH-cCCCEEEE
Confidence 6 58887 45555556565555666 79999855
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.44 Score=51.35 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=89.5
Q ss_pred HHHHHhhhCCCcEEEEcCCCCC-cccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHH
Q 005508 412 TVELIDQQCTVDFIDINMGCPI-DIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 490 (693)
Q Consensus 412 AA~~~~~~aG~D~IDLN~GCP~-~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ 490 (693)
.|++++ .+||++|=+-..+=. ..-.-|+ .++ ..+.+.+.++.|..++++||+|-+-.|+-+.. ++...++.++
T Consensus 27 SAri~e-~aGf~ai~~ss~~va~slG~pD~---g~l-~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~-~v~~tV~~~~ 100 (290)
T TIGR02321 27 VAKLAE-QAGFGGIWGSGFELSASYAVPDA---NIL-SMSTHLEMMRAIASTVSIPLIADIDTGFGNAV-NVHYVVPQYE 100 (290)
T ss_pred HHHHHH-HcCCCEEEECHHHHHHHCCCCCc---ccC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCcH-HHHHHHHHHH
Confidence 344554 679999888421100 0001121 122 45567777888888889999999999987655 6788899999
Q ss_pred HcCCCEEEEecccccCc---c----CCCccH-HHHHHHHHHc--CCC--ceEEEeCCCC----CHHHHHHHH---hcCCC
Q 005508 491 TWGASAVTVHGRTRQQR---Y----SKLADW-DYIYQCARKA--SDD--LQVLGNGDIY----SYLDWNKHK---SDCPE 551 (693)
Q Consensus 491 eaG~daItVHgRtr~q~---y----tg~Adw-~~I~~i~~~~--~~~--IPVIgNGdI~----s~eDa~~~l---~~~~g 551 (693)
++||.+|+|-......+ + ....+. +++.+|+... ..+ +-|++==|.+ ..+++.+-. .+ .|
T Consensus 101 ~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~e-AG 179 (290)
T TIGR02321 101 AAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEE-AG 179 (290)
T ss_pred HcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHH-cC
Confidence 99999999965431111 1 111222 3445554321 112 3344443443 124443211 23 69
Q ss_pred cCEEEEcHHHhhCCCchhHHHhc
Q 005508 552 LASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 552 aDgVMIGRgaL~nPwiF~eIke~ 574 (693)
||+|+|- |.+.+|..+.++-+.
T Consensus 180 AD~ifv~-~~~~~~~ei~~~~~~ 201 (290)
T TIGR02321 180 ADAILIH-SRQKTPDEILAFVKS 201 (290)
T ss_pred CCEEEec-CCCCCHHHHHHHHHh
Confidence 9999993 344666666666553
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.54 Score=50.79 Aligned_cols=153 Identities=8% Similarity=0.101 Sum_probs=86.4
Q ss_pred HHHHhhhCCCcEEEEcCCCCC-c-ccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHH
Q 005508 413 VELIDQQCTVDFIDINMGCPI-D-IVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 490 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~-~-~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ 490 (693)
|++++ .+||++|=+-...-. . .-.-++ | + -..+.+...++.|..++++||+|-+-.|+-+..+ +...++.++
T Consensus 29 Arl~e-~aGf~ai~~sg~~~~as~lG~pD~-g--~-l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~-v~r~V~~~~ 102 (294)
T TIGR02319 29 AKVIQ-QAGFPAVHMTGSGTSASMLGLPDL-G--F-TSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMS-VWRATREFE 102 (294)
T ss_pred HHHHH-HcCCCEEEecHHHHHHHHcCCCCc-C--C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHH-HHHHHHHHH
Confidence 44554 689999866211100 0 000111 1 1 2344566777788888899999999999865544 678899999
Q ss_pred HcCCCEEEEeccccc---CccCCC--cc-HHHHHHHHH---HcC-CCceEEEeCCCCC---HHHHHHHH---hcCCCcCE
Q 005508 491 TWGASAVTVHGRTRQ---QRYSKL--AD-WDYIYQCAR---KAS-DDLQVLGNGDIYS---YLDWNKHK---SDCPELAS 554 (693)
Q Consensus 491 eaG~daItVHgRtr~---q~ytg~--Ad-w~~I~~i~~---~~~-~~IPVIgNGdI~s---~eDa~~~l---~~~~gaDg 554 (693)
++|+.+|+|-..+.. +.+.+. .+ -+++.+|+. ... .++-|++==|... .+++.+-. .+ .|||+
T Consensus 103 ~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~e-AGAD~ 181 (294)
T TIGR02319 103 RVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVA-AGADC 181 (294)
T ss_pred HcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHH-hCCCE
Confidence 999999999654311 111111 11 244555543 221 1234444444433 33433211 13 69999
Q ss_pred EEEcHHHhhCCCchhHHHhc
Q 005508 555 CMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 555 VMIGRgaL~nPwiF~eIke~ 574 (693)
|+|- .+.++....++.+.
T Consensus 182 ifi~--~~~~~~ei~~~~~~ 199 (294)
T TIGR02319 182 IFLE--AMLDVEEMKRVRDE 199 (294)
T ss_pred EEec--CCCCHHHHHHHHHh
Confidence 9994 35666666666553
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.78 Score=49.25 Aligned_cols=136 Identities=16% Similarity=0.140 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
+.+.+.+-++.+. ..|+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+-. .+..++
T Consensus 19 D~~~l~~lv~~~~-~~Gv~gi~v~G----------stGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~---~~t~~a 84 (294)
T TIGR02313 19 DEEALRELIEFQI-EGGSHAISVGG----------TSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA---LNHDET 84 (294)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc---chHHHH
Confidence 6778888888877 46999998874 223222223333344444444433 5788875543 345688
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCC---ccHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcC
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~---Adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaD 553 (693)
+++++..++.|+|++.+..= .|..+ .-.+|++.+.+.++ ++||+ ..|--.+++.+.++.++++.+-
T Consensus 85 i~~a~~A~~~Gad~v~v~pP----~y~~~~~~~l~~~f~~ia~a~~-~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~ 159 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIVP----YYNKPNQEALYDHFAEVADAVP-DFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIV 159 (294)
T ss_pred HHHHHHHHHcCCCEEEEcCc----cCCCCCHHHHHHHHHHHHHhcc-CCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEE
Confidence 99999999999999998752 23332 23677888888774 46766 2465667887777654346666
Q ss_pred EEEEcH
Q 005508 554 SCMIAR 559 (693)
Q Consensus 554 gVMIGR 559 (693)
||=-..
T Consensus 160 giK~ss 165 (294)
T TIGR02313 160 GAKESN 165 (294)
T ss_pred EEEeCC
Confidence 664443
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.62 Score=49.62 Aligned_cols=130 Identities=16% Similarity=0.129 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
+.+.+.+-++.+. ..|+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++
T Consensus 17 D~~~~~~~i~~l~-~~Gv~Gi~~~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~---~s~~~~ 82 (285)
T TIGR00674 17 DFAALEKLIDFQI-ENGTDAIVVVG----------TTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS---NATEEA 82 (285)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC---ccHHHH
Confidence 6678888888877 57999998863 122222223333344444444433 4788875532 245789
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCC---ccHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcC
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~---Adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaD 553 (693)
+++++.++++|+|+|.+..- .|..+ .-++|..+|.+.+ ++||+ ..|--.+++.+.++.+. ..+-
T Consensus 83 i~~a~~a~~~Gad~v~v~pP----~y~~~~~~~i~~~~~~i~~~~--~~pi~lYn~P~~tg~~l~~~~l~~L~~~-~~v~ 155 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVTP----YYNKPTQEGLYQHFKAIAEEV--DLPIILYNVPSRTGVSLYPETVKRLAEE-PNIV 155 (285)
T ss_pred HHHHHHHHHcCCCEEEEcCC----cCCCCCHHHHHHHHHHHHhcC--CCCEEEEECcHHhcCCCCHHHHHHHHcC-CCEE
Confidence 99999999999999998642 23222 2367888888877 57776 35666678888776542 4443
Q ss_pred EE
Q 005508 554 SC 555 (693)
Q Consensus 554 gV 555 (693)
||
T Consensus 156 gi 157 (285)
T TIGR00674 156 AI 157 (285)
T ss_pred EE
Confidence 43
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >smart00356 ZnF_C3H1 zinc finger | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.027 Score=38.35 Aligned_cols=20 Identities=45% Similarity=1.180 Sum_probs=18.1
Q ss_pred CCCCcCcccccCCCCCccccc
Q 005508 142 ECPFLSSEGPCPYGLACRFSG 162 (693)
Q Consensus 142 ~Cp~f~~~G~Cp~G~~CRF~~ 162 (693)
.|..| ..|.|++|.+|+|..
T Consensus 6 ~C~~~-~~g~C~~g~~C~~~H 25 (27)
T smart00356 6 LCKFF-KRGYCPYGDRCKFAH 25 (27)
T ss_pred cCcCc-cCCCCCCCCCcCCCC
Confidence 69999 799999999999954
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.48 Score=50.92 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=65.1
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
.|+.+-+-... +...+.++++++.+.|+++|.+|.-....... ..|+.++++++.+ ++||+.-+ +.+.+++..
T Consensus 116 ~~~~~ql~~~~--~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~--~~~~~i~~l~~~~--~~pvivK~-v~s~~~a~~ 188 (299)
T cd02809 116 GPRWFQLYVPR--DREITEDLLRRAEAAGYKALVLTVDTPVLGRR--LTWDDLAWLRSQW--KGPLILKG-ILTPEDALR 188 (299)
T ss_pred CCeEEEEeecC--CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--CCHHHHHHHHHhc--CCCEEEee-cCCHHHHHH
Confidence 68888775532 34567788889999999999999765432222 5799999999988 58998864 789999988
Q ss_pred HHhcCCCcCEEEE
Q 005508 545 HKSDCPELASCMI 557 (693)
Q Consensus 545 ~l~~~~gaDgVMI 557 (693)
+.+ .|||+|.+
T Consensus 189 a~~--~G~d~I~v 199 (299)
T cd02809 189 AVD--AGADGIVV 199 (299)
T ss_pred HHH--CCCCEEEE
Confidence 665 69999976
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.52 Score=51.37 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=67.0
Q ss_pred HHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEeccccc--CccCCCc----cHHHHHHHHHHcCC
Q 005508 453 KGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ--QRYSKLA----DWDYIYQCARKASD 526 (693)
Q Consensus 453 ~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~--q~ytg~A----dw~~I~~i~~~~~~ 526 (693)
.+-++.+++..+.||.+-|- | .+.++..++++.++++|+|+|.||--... ....+.. -++.++.+++.+
T Consensus 88 ~~~i~~~~~~~~~pvi~si~-g--~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-- 162 (325)
T cd04739 88 LELIRRAKRAVSIPVIASLN-G--VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-- 162 (325)
T ss_pred HHHHHHHHhccCCeEEEEeC-C--CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc--
Confidence 33333444445789988773 2 23467889999999999999999875311 1112211 146677787777
Q ss_pred CceEEE--eCCCCCHHHHHHHHhcCCCcCEEEE-cH
Q 005508 527 DLQVLG--NGDIYSYLDWNKHKSDCPELASCMI-AR 559 (693)
Q Consensus 527 ~IPVIg--NGdI~s~eDa~~~l~~~~gaDgVMI-GR 559 (693)
++||+. .+++.+..++.+.+.+ .|||+|.+ .|
T Consensus 163 ~iPv~vKl~p~~~~~~~~a~~l~~-~Gadgi~~~nt 197 (325)
T cd04739 163 TIPVAVKLSPFFSALAHMAKQLDA-AGADGLVLFNR 197 (325)
T ss_pred CCCEEEEcCCCccCHHHHHHHHHH-cCCCeEEEEcC
Confidence 689884 5566677777777776 79999855 44
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.42 Score=52.32 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=71.7
Q ss_pred CccccccCChHHHHHHHHHhcc-ccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccC--ccCCCccH--
Q 005508 440 GAGSCLLTKPMRMKGIIEATSG-TVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQ--RYSKLADW-- 514 (693)
Q Consensus 440 G~GsaLl~rp~~l~eIV~av~~-~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q--~ytg~Adw-- 514 (693)
|.+++.+.+|+..... +.+++ ..++|+.+-+...... ......+.+.++..+++++.||--..+. ...+..+|
T Consensus 89 Gs~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~-~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~ 166 (333)
T TIGR02151 89 GSQRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLV-EGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKG 166 (333)
T ss_pred cCchhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhc-cccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHH
Confidence 4455566788876666 77777 4589998855431110 0113345555555678888888642221 22233344
Q ss_pred --HHHHHHHHHcCCCceEEE--eCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 515 --DYIYQCARKASDDLQVLG--NGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 515 --~~I~~i~~~~~~~IPVIg--NGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+.|+.+++.+ ++||+. +|.-.+.+++..+. + .|+|+|-|+
T Consensus 167 ~le~i~~i~~~~--~vPVivK~~g~g~~~~~a~~L~-~-aGvd~I~Vs 210 (333)
T TIGR02151 167 WLEKIAEICSQL--SVPVIVKEVGFGISKEVAKLLA-D-AGVSAIDVA 210 (333)
T ss_pred HHHHHHHHHHhc--CCCEEEEecCCCCCHHHHHHHH-H-cCCCEEEEC
Confidence 6788888888 699986 56667888887754 4 699999775
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.26 Score=50.10 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 479 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 479 ~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
..+..++|+.++++|+++|++..-. ..+. -..+.+..+++.+ ++||+.-|.|.+.+.++.+++ .|||+|.++
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~--~~~~--g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~--~Gad~v~l~ 101 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEP--KYFQ--GSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARA--AGADAVLLI 101 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCc--cccC--CCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHH--cCCCEEEEe
Confidence 3568899999999999999887432 1111 2456778888877 699999888899988888776 699999887
Q ss_pred HHHhh
Q 005508 559 RGALI 563 (693)
Q Consensus 559 RgaL~ 563 (693)
-.++.
T Consensus 102 ~~~~~ 106 (217)
T cd00331 102 VAALD 106 (217)
T ss_pred eccCC
Confidence 66553
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.2 Score=47.72 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHhhhCC-CcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhH
Q 005508 405 YPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG-~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~ 481 (693)
+.+.+.+-.+.+. ..| +++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+
T Consensus 19 D~~~~~~~i~~~i-~~G~v~gi~~~G----------stGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~---~~t~~ 84 (290)
T TIGR00683 19 NEKGLRQIIRHNI-DKMKVDGLYVGG----------STGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS---VNLKE 84 (290)
T ss_pred CHHHHHHHHHHHH-hCCCcCEEEECC----------cccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC---CCHHH
Confidence 6677888888776 468 99998873 222222234444455666655554 4788885542 24578
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCccCCC---ccHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCc
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPEL 552 (693)
Q Consensus 482 ~~~la~~L~eaG~daItVHgRtr~q~ytg~---Adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~ga 552 (693)
+.++++.++++|+|+|.+.. ..|..+ .-++|..++.+.++ ++||+ ..|--.+++.+.++.+ ++.+
T Consensus 85 ~i~la~~a~~~Gad~v~v~~----P~y~~~~~~~i~~yf~~v~~~~~-~lpv~lYn~P~~tg~~l~~~~i~~L~~-~pnv 158 (290)
T TIGR00683 85 AVELGKYATELGYDCLSAVT----PFYYKFSFPEIKHYYDTIIAETG-GLNMIVYSIPFLTGVNMGIEQFGELYK-NPKV 158 (290)
T ss_pred HHHHHHHHHHhCCCEEEEeC----CcCCCCCHHHHHHHHHHHHhhCC-CCCEEEEeCccccccCcCHHHHHHHhc-CCCE
Confidence 89999999999999999853 223322 23667778876653 46665 2365667777777553 2444
Q ss_pred CEE
Q 005508 553 ASC 555 (693)
Q Consensus 553 DgV 555 (693)
-||
T Consensus 159 ~gi 161 (290)
T TIGR00683 159 LGV 161 (290)
T ss_pred EEE
Confidence 443
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.4 Score=47.35 Aligned_cols=148 Identities=12% Similarity=0.089 Sum_probs=93.2
Q ss_pred CCeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 394 EDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 394 e~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
..|+.++|=+. +.+...+|. .+||+-|-+- |.--.+.++-+...++++-... .+++|-.=+-
T Consensus 72 ~VPValHLDHg~~~e~i~~ai-----~~GFtSVM~D-----------gS~lp~eeNi~~T~~vv~~Ah~-~gv~VEaElG 134 (282)
T TIGR01858 72 NMPLALHLDHHESLDDIRQKV-----HAGVRSAMID-----------GSHFPFAQNVKLVKEVVDFCHR-QDCSVEAELG 134 (282)
T ss_pred CCCEEEECCCCCCHHHHHHHH-----HcCCCEEeec-----------CCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEE
Confidence 45777777533 444443332 3577777774 3222345566777777766543 3555544332
Q ss_pred -C-CCCCC---------hhHHHHHHHHHHHcCCCEEEEecccccCccCCC--ccHHHHHHHHHHcCCCceEEEeCCCCCH
Q 005508 473 -T-GYFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL--ADWDYIYQCARKASDDLQVLGNGDIYSY 539 (693)
Q Consensus 473 -~-G~~d~---------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~--Adw~~I~~i~~~~~~~IPVIgNGdI~s~ 539 (693)
+ |..+. -.+..+..+.+++.|+|+|.|.-+|..+.|.+. .||+.+++|++.+ ++|++.-|+=-.+
T Consensus 135 ~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~ 212 (282)
T TIGR01858 135 RLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV--DVPLVLHGASDVP 212 (282)
T ss_pred ecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh--CCCeEEecCCCCC
Confidence 1 11111 113344555567899999999888888888763 5899999999998 7999988876655
Q ss_pred HH-HHHHHhcCCCcCEEEEcHHHh
Q 005508 540 LD-WNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 540 eD-a~~~l~~~~gaDgVMIGRgaL 562 (693)
+| +.+++. .|+.=|=|++.+.
T Consensus 213 ~e~~~~ai~--~Gi~KiNi~T~l~ 234 (282)
T TIGR01858 213 DEDVRRTIE--LGICKVNVATELK 234 (282)
T ss_pred HHHHHHHHH--cCCeEEEeCcHHH
Confidence 44 555554 5777777776654
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.63 Score=49.92 Aligned_cols=152 Identities=11% Similarity=0.046 Sum_probs=91.7
Q ss_pred HHHHhhhCCCcEEEEcCC-CCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHH
Q 005508 413 VELIDQQCTVDFIDINMG-CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT 491 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~G-CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~e 491 (693)
|.+++ .+||.+|=+-.+ +-...-..|+. ++ ..+.+...++.|..++++||+|-+-+|+-+ ..++...++.+++
T Consensus 31 A~la~-~aGF~al~~sg~~vA~slG~pD~~---~~-t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~nvartV~~~~~ 104 (289)
T COG2513 31 ALLAE-RAGFKALYLSGAGVAASLGLPDLG---IT-TLDEVLADARRITDAVDLPVLVDIDTGFGE-ALNVARTVRELEQ 104 (289)
T ss_pred HHHHH-HcCCeEEEeccHHHHHhcCCCccc---cc-cHHHHHHHHHHHHhhcCCceEEeccCCCCc-HHHHHHHHHHHHH
Confidence 44454 689999988421 11111111221 11 256677778888888999999999999976 6788889999999
Q ss_pred cCCCEEEEecccc---cCc------cCCCccHHHHHHHHHHcCCCceEEEeCCC--CC---HHHHH----HHHhcCCCcC
Q 005508 492 WGASAVTVHGRTR---QQR------YSKLADWDYIYQCARKASDDLQVLGNGDI--YS---YLDWN----KHKSDCPELA 553 (693)
Q Consensus 492 aG~daItVHgRtr---~q~------ytg~Adw~~I~~i~~~~~~~IPVIgNGdI--~s---~eDa~----~~l~~~~gaD 553 (693)
+|+.+|+|-.-.. -+. +....-.+.|+.+++..+ +.+++.+... +- .+++. .+++ .|||
T Consensus 105 aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~-~~~fvi~ARTda~~~~~ld~AI~Ra~AY~e--AGAD 181 (289)
T COG2513 105 AGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARR-DPDFVIIARTDALLVEGLDDAIERAQAYVE--AGAD 181 (289)
T ss_pred cCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhcc-CCCeEEEeehHHHHhccHHHHHHHHHHHHH--cCCc
Confidence 9999999954321 111 111112345555555553 2344433221 11 34433 3333 6999
Q ss_pred EEEEcHHHhhCCCchhHHHhcc
Q 005508 554 SCMIARGALIKPWIFTEIKEQR 575 (693)
Q Consensus 554 gVMIGRgaL~nPwiF~eIke~~ 575 (693)
+|-. .+|.++.-|+++.+.-
T Consensus 182 ~if~--~al~~~e~i~~f~~av 201 (289)
T COG2513 182 AIFP--EALTDLEEIRAFAEAV 201 (289)
T ss_pred EEcc--ccCCCHHHHHHHHHhc
Confidence 8865 4677777777776653
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.62 Score=49.57 Aligned_cols=104 Identities=21% Similarity=0.206 Sum_probs=61.9
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccC-EEEEecCC-CCCChhHHHHH-HHHH
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKP-ITIKVRTG-YFEGKNRIDSL-IADI 489 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iP-VtVKiR~G-~~d~~~~~~~l-a~~L 489 (693)
|+++. ++|||.|=+ |--...+. -|+-....-..+.+...+++|.+.++.| |++-+-.| +..+..++..- ++.+
T Consensus 28 Arl~e-~aG~d~i~v--Gds~~~~~-lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~ 103 (264)
T PRK00311 28 AKLFD-EAGVDVILV--GDSLGMVV-LGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLM 103 (264)
T ss_pred HHHHH-HcCCCEEEE--CHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHH
Confidence 44554 689999943 43222221 3443444556777888888888888775 77766533 32444554444 4555
Q ss_pred HHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEE
Q 005508 490 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL 531 (693)
Q Consensus 490 ~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVI 531 (693)
+++|+++|.|-+.. .-.+.|+.+.+ ..|||+
T Consensus 104 ~~aGa~aVkiEdg~--------~~~~~I~al~~---agIpV~ 134 (264)
T PRK00311 104 KEAGAHAVKLEGGE--------EVAETIKRLVE---RGIPVM 134 (264)
T ss_pred HHhCCeEEEEcCcH--------HHHHHHHHHHH---CCCCEe
Confidence 66999999997631 11233444443 369987
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.39 Score=49.48 Aligned_cols=83 Identities=14% Similarity=0.009 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+..+-++.|.+.|++.+.+|-..-.|.......|+.+..+++.....+.|-..||| +++++..++. -+++.|.+||+
T Consensus 118 ~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~~~--~~~~ivIvGra 194 (217)
T COG0269 118 DPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLFKG--IGADIVIVGRA 194 (217)
T ss_pred CHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHHHHhc--CCCCEEEECch
Confidence 35677888999999999999554445422223377888888877434789999999 8999998776 58999999999
Q ss_pred HhhCCC
Q 005508 561 ALIKPW 566 (693)
Q Consensus 561 aL~nPw 566 (693)
+-.-..
T Consensus 195 It~a~d 200 (217)
T COG0269 195 ITGAKD 200 (217)
T ss_pred hcCCCC
Confidence 876554
|
|
| >KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.042 Score=59.53 Aligned_cols=62 Identities=27% Similarity=0.651 Sum_probs=48.2
Q ss_pred cCChhhhccCCCCCCCCCCCCCCCCChhhhhhcC---------CCCC-CCCCCCcCcccccCC-CCCcccccCccccc
Q 005508 102 HLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQK---------PDDL-EGECPFLSSEGPCPY-GLACRFSGTHRDVV 168 (693)
Q Consensus 102 ~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~~yl~~K---------~~di-~~~Cp~f~~~G~Cp~-G~~CRF~~sH~~~~ 168 (693)
..|.++...+ .|.|+..|+|.|-....+..- +.-. +..|-.|...|+|.| |.+||| +|..+.
T Consensus 87 ~~~~~~~~~~---~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crf--ah~~~e 159 (332)
T KOG1677|consen 87 GDCSAYLRTG---VCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRF--AHGLEE 159 (332)
T ss_pred cccccccccC---CCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhh--cCCccc
Confidence 7899999987 899999999999764443321 1111 569999999999999 999999 665544
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.2 Score=44.43 Aligned_cols=150 Identities=7% Similarity=-0.001 Sum_probs=91.3
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcc-----cc---cC-----CccccccCChHHHHHHHHHhccc
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI-----VV---NK-----GAGSCLLTKPMRMKGIIEATSGT 462 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~-----v~---k~-----G~GsaLl~rp~~l~eIV~av~~~ 462 (693)
+++.=|.+.++++..+.++.+. +.|+..|||-+--|... ++ .+ -.|++-.-+++.+...+++
T Consensus 16 ~vi~Vvr~~~~~~a~~~~~al~-~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~a---- 90 (222)
T PRK07114 16 GMVPVFYHADVEVAKKVIKACY-DGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQL---- 90 (222)
T ss_pred CEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHc----
Confidence 4555577899999999999998 68999999977444211 00 00 0222222344443333222
Q ss_pred cccCEEEEecCCCCCChhHHHHHHH-----------------HHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcC
Q 005508 463 VDKPITIKVRTGYFEGKNRIDSLIA-----------------DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKAS 525 (693)
Q Consensus 463 v~iPVtVKiR~G~~d~~~~~~~la~-----------------~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~ 525 (693)
+--+.| .++++ ++..+.++ ...++|++.|-+..-. .....|++.++.-+|
T Consensus 91 -GA~FiV--sP~~~---~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~-------~~G~~~ikal~~p~p 157 (222)
T PRK07114 91 -GANFIV--TPLFN---PDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGS-------VYGPGFVKAIKGPMP 157 (222)
T ss_pred -CCCEEE--CCCCC---HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECccc-------ccCHHHHHHHhccCC
Confidence 112222 23322 11111111 2345777777776421 112578999998887
Q ss_pred CCceEEEeCCCCC-HHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 526 DDLQVLGNGDIYS-YLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 526 ~~IPVIgNGdI~s-~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
.++++..|||.- .+++.+.+. .|+.+|-+|..+..+.+
T Consensus 158 -~i~~~ptGGV~~~~~n~~~yl~--aGa~avg~Gs~L~~~~~ 196 (222)
T PRK07114 158 -WTKIMPTGGVEPTEENLKKWFG--AGVTCVGMGSKLIPKEA 196 (222)
T ss_pred -CCeEEeCCCCCcchhcHHHHHh--CCCEEEEEChhhcCccc
Confidence 799999999974 478888887 58999999988875554
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=3.8 Score=42.04 Aligned_cols=180 Identities=12% Similarity=0.089 Sum_probs=99.2
Q ss_pred CCCCcHHHHHHHHHcCCCEEEecccccchhcc-CChhhhh-hhhc-cCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcE
Q 005508 348 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQ-GQASEWA-LLRR-HSSEDLFGVQICGAYPDTLARTVELIDQQCTVDF 424 (693)
Q Consensus 348 t~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~-g~~~e~~-ll~~-h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~ 424 (693)
.|++++.--++|.++|||++ .++....--+ -...+.+ +.+. ++.-.+++| +...+++.+.+.++ .+++|.
T Consensus 8 CGi~~~eda~~~~~~Gad~i--GfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgV-f~~~~~~~i~~~~~----~~~~d~ 80 (210)
T PRK01222 8 CGITTPEDAEAAAELGADAI--GFVFYPKSPRYVSPEQAAELAAALPPFVKVVGV-FVNASDEEIDEIVE----TVPLDL 80 (210)
T ss_pred CCCCcHHHHHHHHHcCCCEE--EEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEE-EeCCCHHHHHHHHH----hcCCCE
Confidence 56777777788889999865 2221111000 0111111 1221 222234443 22456777766553 568999
Q ss_pred EEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccc
Q 005508 425 IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR 504 (693)
Q Consensus 425 IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr 504 (693)
|.||...+ +.. ++.++...+++|.--++.... .+...+. .. ...+|++-+...+.
T Consensus 81 vQLHg~e~----------------~~~----~~~l~~~~~~~iik~i~v~~~---~~l~~~~-~~-~~~~d~~L~Ds~~~ 135 (210)
T PRK01222 81 LQLHGDET----------------PEF----CRQLKRRYGLPVIKALRVRSA---GDLEAAA-AY-YGDADGLLLDAYVG 135 (210)
T ss_pred EEECCCCC----------------HHH----HHHHHhhcCCcEEEEEecCCH---HHHHHHH-hh-hccCCEEEEcCCCC
Confidence 99985333 222 334444445666655555311 1111111 11 23688988886553
Q ss_pred cCccCC-CccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 505 QQRYSK-LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 505 ~q~ytg-~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
..+-+| ..||+.+. ... ..|||..||| +++.+.+++.. .+..||=+..|.=..|-
T Consensus 136 ~~GGtG~~~dw~~l~---~~~--~~p~~LAGGi-~peNv~~ai~~-~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 136 LPGGTGKTFDWSLLP---AGL--AKPWILAGGL-NPDNVAEAIRQ-VRPYGVDVSSGVESAPG 191 (210)
T ss_pred CCCCCCCccchHHhh---hcc--CCCEEEECCC-CHHHHHHHHHh-cCCCEEEecCceECCCC
Confidence 111222 35898872 122 3699999999 88888888875 56788888877755453
|
|
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.2 Score=48.61 Aligned_cols=131 Identities=8% Similarity=0.072 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCcEEEEcCCC-CCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCCh
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGC-PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGK 479 (693)
Q Consensus 403 G~~pe~~~~AA~~~~~~aG~D~IDLN~GC-P~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~ 479 (693)
..+++.+.+.|+.+. ..||..+-|..|. |. .+ ..+++.-.+.|++|++.+ ++.|.|-.-.+|+ .
T Consensus 118 ~~~~~~~~~~a~~~~-~~Gf~~~Kikvg~~~~-----~~-----~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~--~ 184 (341)
T cd03327 118 PTDLDELPDEAKEYL-KEGYRGMKMRFGYGPS-----DG-----HAGLRKNVELVRAIREAVGYDVDLMLDCYMSWN--L 184 (341)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEECCCCCCC-----cc-----hHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCC--H
Confidence 357888876666655 4599999997643 10 00 023466778889998887 4666666555663 4
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
.++.++++.|++.++.+| +|-. .+-|++-.+++++.. ++||.+.=.+++..++..++.. ..+|.|++
T Consensus 185 ~~A~~~~~~l~~~~~~~i-------EeP~-~~~d~~~~~~l~~~~--~~pIa~gE~~~~~~~~~~~i~~-~a~d~i~~ 251 (341)
T cd03327 185 NYAIKMARALEKYELRWI-------EEPL-IPDDIEGYAELKKAT--GIPISTGEHEYTVYGFKRLLEG-RAVDILQP 251 (341)
T ss_pred HHHHHHHHHhhhcCCccc-------cCCC-CccCHHHHHHHHhcC--CCCeEeccCccCHHHHHHHHHc-CCCCEEec
Confidence 689999999999887765 3333 345788888999887 6999887789999999999886 67888874
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.55 Score=51.24 Aligned_cols=113 Identities=13% Similarity=0.107 Sum_probs=72.5
Q ss_pred CccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEeccccc--CccCCCccH--
Q 005508 440 GAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ--QRYSKLADW-- 514 (693)
Q Consensus 440 G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~--q~ytg~Adw-- 514 (693)
|.+++.+.+|+.. +-++.++... +.|+.+-+-.... ...+...+...++..+++++.||--..+ ....+..+|
T Consensus 88 Gs~~~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~-~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~ 165 (326)
T cd02811 88 GSQRAALEDPELA-ESFTVVREAPPNGPLIANLGAVQL-NGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRG 165 (326)
T ss_pred cCchhhccChhhh-hHHHHHHHhCCCceEEeecCcccc-CCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHH
Confidence 4454556678866 6677777766 5898884443110 0113445566666678999999863311 122333455
Q ss_pred --HHHHHHHHHcCCCceEEE--eCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 515 --DYIYQCARKASDDLQVLG--NGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 515 --~~I~~i~~~~~~~IPVIg--NGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+.|+.+++.+ ++||+. +|.-.+.+++..+. + .|+|+|-|+
T Consensus 166 ~~~~i~~l~~~~--~vPVivK~~g~g~s~~~a~~l~-~-~Gvd~I~vs 209 (326)
T cd02811 166 WLERIEELVKAL--SVPVIVKEVGFGISRETAKRLA-D-AGVKAIDVA 209 (326)
T ss_pred HHHHHHHHHHhc--CCCEEEEecCCCCCHHHHHHHH-H-cCCCEEEEC
Confidence 5677788877 689986 56668898887754 4 799999874
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.1 Score=49.11 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=73.4
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEE-EecCC-CCCChhHHHHHHHHH-
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITI-KVRTG-YFEGKNRIDSLIADI- 489 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtV-KiR~G-~~d~~~~~~~la~~L- 489 (693)
|+++. ++|+|.|=+- -...++ -.|+-+.+--..+.+...+++|++.+..|++| -|--| +..+.+++.+-|.+|
T Consensus 48 A~i~d-~aGvD~ILVG--DSlgmv-~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~ 123 (332)
T PLN02424 48 AVHVD-SAGIDVCLVG--DSAAMV-VHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRML 123 (332)
T ss_pred HHHHH-HcCCCEEEEC--CcHHHH-hcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 44554 6899998773 222211 24665666667788889999999999999988 78777 445667788888877
Q ss_pred HHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEE
Q 005508 490 GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL 531 (693)
Q Consensus 490 ~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVI 531 (693)
.++|+++|-|-|.+ ....+.|+.+.+ . .|||+
T Consensus 124 ~eaGa~aVKlEGg~-------~~~~~~I~~l~~-~--GIPV~ 155 (332)
T PLN02424 124 KEGGMDAVKLEGGS-------PSRVTAAKAIVE-A--GIAVM 155 (332)
T ss_pred HHhCCcEEEECCCc-------HHHHHHHHHHHH-c--CCCEE
Confidence 67999999998753 112345666663 2 69999
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.17 Score=56.27 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=76.6
Q ss_pred hCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEE
Q 005508 419 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAV 497 (693)
Q Consensus 419 ~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daI 497 (693)
++|+|.|=|... +| +...-.++|+.|++.. .+.|.. | .-.+.+-++.|-++|||.|
T Consensus 261 ~aGvdvviLDSS--------qG-------nS~~qiemik~iK~~yP~l~Via----G----NVVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550|consen 261 QAGVDVVILDSS--------QG-------NSIYQLEMIKYIKETYPDLQIIA----G----NVVTKEQAANLIAAGADGL 317 (503)
T ss_pred hcCCcEEEEecC--------CC-------cchhHHHHHHHHHhhCCCceeec----c----ceeeHHHHHHHHHccCcee
Confidence 578888777531 12 2345567888888776 444432 1 1234567788889999999
Q ss_pred EEeccc------cc----CccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 498 TVHGRT------RQ----QRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 498 tVHgRt------r~----q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
.|--.+ ++ ++..+.|-++ +.+++... .+|||+-|+|.+.-++.++|. .||+.||+| ++|.
T Consensus 318 rVGMGsGSiCiTqevma~GrpQ~TAVy~-va~~A~q~--gvpviADGGiq~~Ghi~KAl~--lGAstVMmG-~lLA 387 (503)
T KOG2550|consen 318 RVGMGSGSICITQKVMACGRPQGTAVYK-VAEFANQF--GVPCIADGGIQNVGHVVKALG--LGASTVMMG-GLLA 387 (503)
T ss_pred EeccccCceeeeceeeeccCCcccchhh-HHHHHHhc--CCceeecCCcCccchhHhhhh--cCchhheec-ceee
Confidence 885433 22 2222333333 44555556 699999999999999999987 599999999 4443
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.42 Score=54.11 Aligned_cols=82 Identities=13% Similarity=-0.010 Sum_probs=60.3
Q ss_pred HHHHHcCCCEEEEecc---cccCccCCCccHHHHHHHHHHcC-------CCceEEEeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 487 ADIGTWGASAVTVHGR---TRQQRYSKLADWDYIYQCARKAS-------DDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 487 ~~L~eaG~daItVHgR---tr~q~ytg~Adw~~I~~i~~~~~-------~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
.+..+.|+|+|.+-.- +.+.+...+..|+.++++++.+. ..+||++-||| +.+++.+++. +||+||.
T Consensus 314 ~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~--aGa~GVA 390 (437)
T PRK12290 314 LRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQ--CGVSSLA 390 (437)
T ss_pred HHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHH--cCCCEEE
Confidence 4456789999988432 23334455667888887776542 15999999999 8999998776 6999999
Q ss_pred EcHHHhhCCCchhHH
Q 005508 557 IARGALIKPWIFTEI 571 (693)
Q Consensus 557 IGRgaL~nPwiF~eI 571 (693)
+-|+++..++.-..+
T Consensus 391 VVSAI~~A~DP~aa~ 405 (437)
T PRK12290 391 VVRAITLAEDPQLVI 405 (437)
T ss_pred EehHhhcCCCHHHHH
Confidence 999998766544433
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.49 Score=48.07 Aligned_cols=109 Identities=16% Similarity=0.051 Sum_probs=63.9
Q ss_pred HHHHHhccccccCEEEEec-CCCCCChhHHHHHHHHHHHcCCCEEEEecccccC----------ccC----------CC-
Q 005508 454 GIIEATSGTVDKPITIKVR-TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQ----------RYS----------KL- 511 (693)
Q Consensus 454 eIV~av~~~v~iPVtVKiR-~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q----------~yt----------g~- 511 (693)
++|+++++...+++.+|+= ++ ++...+++.+.++|+|+||+|.-.... .+. .+
T Consensus 45 ~~v~~ir~~~~i~~D~k~~di~-----~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~ 119 (215)
T PRK13813 45 GIIEELKRYAPVIADLKVADIP-----NTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPG 119 (215)
T ss_pred HHHHHHHhcCCEEEEeeccccH-----HHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Confidence 6677777766778888875 22 223445577888999999999754100 000 00
Q ss_pred --c--------------------------cHHHHHHHHHHcCCCceEEEeCCCCCH-HHHHHHHhcCCCcCEEEEcHHHh
Q 005508 512 --A--------------------------DWDYIYQCARKASDDLQVLGNGDIYSY-LDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 512 --A--------------------------dw~~I~~i~~~~~~~IPVIgNGdI~s~-eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
. ..+-|.++++..+.++ .|..|+|... ..+..+++ .|+|++.+||+++
T Consensus 120 ~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~-~ivdgGI~~~g~~~~~~~~--aGad~iV~Gr~I~ 196 (215)
T PRK13813 120 ALEFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDEL-KIISPGIGAQGGKAADAIK--AGADYVIVGRSIY 196 (215)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCc-EEEeCCcCCCCCCHHHHHH--cCCCEEEECcccC
Confidence 0 0112223333332112 3367888764 24666565 5999999999988
Q ss_pred hCCCchhH
Q 005508 563 IKPWIFTE 570 (693)
Q Consensus 563 ~nPwiF~e 570 (693)
..+..-..
T Consensus 197 ~~~d~~~~ 204 (215)
T PRK13813 197 NAADPREA 204 (215)
T ss_pred CCCCHHHH
Confidence 77654333
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.14 Score=53.44 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=46.6
Q ss_pred cCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 492 WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 492 aG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
.|...|-+-..+. .|.. .. +.+.++++.+. ++|+|..|||.|.+.+.++++ .|||.|.+|..+..+|+
T Consensus 152 ~g~~~iYLEaGSG--a~~~-v~-~~v~~~~~~~~-~~~LivGGGIrs~e~A~~~~~--aGAD~IVvGn~iee~~~ 219 (230)
T PF01884_consen 152 LGMPIIYLEAGSG--AYGP-VP-EEVIAAVKKLS-DIPLIVGGGIRSPEQAREMAE--AGADTIVVGNAIEEDPD 219 (230)
T ss_dssp TT-SEEEEE--TT--SSS--HH-HHHHHHHHHSS-SSEEEEESS--SHHHHHHHHC--TTSSEEEESCHHHHHH-
T ss_pred hCCCEEEEEeCCC--CCCC-cc-HHHHHHHHhcC-CccEEEeCCcCCHHHHHHHHH--CCCCEEEECCEEEEcch
Confidence 6777777765543 2322 21 34445555554 799999999999999999886 69999999999999998
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.6 Score=48.39 Aligned_cols=114 Identities=13% Similarity=0.071 Sum_probs=76.1
Q ss_pred cccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEE-Ee-cccccCcc-CCCccHHHHH
Q 005508 442 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT-VH-GRTRQQRY-SKLADWDYIY 518 (693)
Q Consensus 442 GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daIt-VH-gRtr~q~y-tg~Adw~~I~ 518 (693)
||.++.+..++..+- .+++||.+|..+. .+.++....+..+.+.|..-|+ +| |-+.-..+ ....||..|.
T Consensus 208 ~s~~~~n~~LL~~~a-----~~gkPVilk~G~~--~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~ 280 (360)
T PRK12595 208 GARNMQNFELLKAAG-----RVNKPVLLKRGLS--ATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVP 280 (360)
T ss_pred CcccccCHHHHHHHH-----ccCCcEEEeCCCC--CCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHH
Confidence 677888876655543 3589999987763 2457788888889999986554 45 43322211 2336999999
Q ss_pred HHHHHcCCCceEEEeCCCCC----HH--HHHHHHhcCCCcCEEEEcHHHhhCCCch
Q 005508 519 QCARKASDDLQVLGNGDIYS----YL--DWNKHKSDCPELASCMIARGALIKPWIF 568 (693)
Q Consensus 519 ~i~~~~~~~IPVIgNGdI~s----~e--Da~~~l~~~~gaDgVMIGRgaL~nPwiF 568 (693)
.+++.. ++||+.+-|=.. .. -+..++. .||||+||=+-. ||..-
T Consensus 281 ~lk~~~--~~PV~~d~~Hs~G~r~~~~~~a~aAva--~GAdg~~iE~H~--dp~~a 330 (360)
T PRK12595 281 ILKQET--HLPVMVDVTHSTGRRDLLLPTAKAALA--IGADGVMAEVHP--DPAVA 330 (360)
T ss_pred HHHHHh--CCCEEEeCCCCCcchhhHHHHHHHHHH--cCCCeEEEEecC--CCCCC
Confidence 999987 699999544322 11 2333444 599999998766 66543
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.37 E-value=2.1 Score=46.06 Aligned_cols=148 Identities=12% Similarity=0.090 Sum_probs=92.3
Q ss_pred CCeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 394 EDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 394 e~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
..|+.+.|=+. +.+...+|. .+||+-|-+- |.--.+.++-+...++++-... .++.|-.=+-
T Consensus 74 ~VPV~lHLDHg~~~e~i~~Ai-----~~GftSVM~D-----------gS~l~~eeNi~~T~~vv~~Ah~-~gv~VEaElG 136 (284)
T PRK09195 74 HHPLALHLDHHEKFDDIAQKV-----RSGVRSVMID-----------GSHLPFAQNISLVKEVVDFCHR-FDVSVEAELG 136 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHH-----HcCCCEEEeC-----------CCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEEe
Confidence 45677777443 444333332 3477777663 3333455667777777776653 3454444332
Q ss_pred -CC-CCCC---------hhHHHHHHHHHHHcCCCEEEEecccccCccCCC--ccHHHHHHHHHHcCCCceEEEeCCCCCH
Q 005508 473 -TG-YFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL--ADWDYIYQCARKASDDLQVLGNGDIYSY 539 (693)
Q Consensus 473 -~G-~~d~---------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~--Adw~~I~~i~~~~~~~IPVIgNGdI~s~ 539 (693)
+| ..+. -.+..+....+++.|||+|.|.-.|..+.|.+. .||+.+++|++.+ ++|++.-|+=-.+
T Consensus 137 ~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~ 214 (284)
T PRK09195 137 RLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV--NIPLVLHGASGLP 214 (284)
T ss_pred cccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCeEEecCCCCC
Confidence 11 1111 113344455556799999998877777777653 5899999999998 6999988865544
Q ss_pred -HHHHHHHhcCCCcCEEEEcHHHh
Q 005508 540 -LDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 540 -eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
+++.+++. .|+.=|=|++.+.
T Consensus 215 ~e~~~~ai~--~Gi~KiNi~T~l~ 236 (284)
T PRK09195 215 TKDIQQTIK--LGICKVNVATELK 236 (284)
T ss_pred HHHHHHHHH--cCCeEEEeCcHHH
Confidence 55666665 5788887887765
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=93.36 E-value=9.3 Score=41.64 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=61.3
Q ss_pred cccCEEE--EecCCC-CC-Ch-hHHHHHHHHHHHcCCCEEEEecccccCccCC---CccHHHHHHHHHHcCCCceEEEeC
Q 005508 463 VDKPITI--KVRTGY-FE-GK-NRIDSLIADIGTWGASAVTVHGRTRQQRYSK---LADWDYIYQCARKASDDLQVLGNG 534 (693)
Q Consensus 463 v~iPVtV--KiR~G~-~d-~~-~~~~~la~~L~eaG~daItVHgRtr~q~ytg---~Adw~~I~~i~~~~~~~IPVIgNG 534 (693)
.++|+.+ --|-.. .+ .. ..+...++...+.|+|.|-+- |++ .-+-+.++++.+.+. ++||+..|
T Consensus 166 ~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~-------y~~~~~~g~~e~f~~vv~~~g-~vpVviaG 237 (304)
T PRK06852 166 HGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVN-------YPKKEGANPAELFKEAVLAAG-RTKVVCAG 237 (304)
T ss_pred hCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEec-------CCCcCCCCCHHHHHHHHHhCC-CCcEEEeC
Confidence 4899875 223221 11 12 344455566789999999763 331 134567778887773 58988777
Q ss_pred CCC-CHHHHHHHHhcC---CCcCEEEEcHHHhhCCCc
Q 005508 535 DIY-SYLDWNKHKSDC---PELASCMIARGALIKPWI 567 (693)
Q Consensus 535 dI~-s~eDa~~~l~~~---~gaDgVMIGRgaL~nPwi 567 (693)
|=. +.+++.+++... .|+.||++||=+...|.-
T Consensus 238 G~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p 274 (304)
T PRK06852 238 GSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLD 274 (304)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCc
Confidence 766 444555444321 699999999998887543
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.78 Score=48.83 Aligned_cols=108 Identities=16% Similarity=0.100 Sum_probs=73.2
Q ss_pred cccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEE-ecccc-cCccC-CCccHHHHH
Q 005508 442 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV-HGRTR-QQRYS-KLADWDYIY 518 (693)
Q Consensus 442 GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItV-HgRtr-~q~yt-g~Adw~~I~ 518 (693)
||..+.+..++.++ ..+++||.+|..+. -+.+++...+..+...|..-|+| |-..+ -..|. ...|+..+.
T Consensus 117 ga~~~~n~~LL~~~-----a~~gkPV~lk~G~~--~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~ 189 (266)
T PRK13398 117 GSRNMQNFELLKEV-----GKTKKPILLKRGMS--ATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVA 189 (266)
T ss_pred CcccccCHHHHHHH-----hcCCCcEEEeCCCC--CCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHH
Confidence 67788887776655 24689999988764 24567788888899999865554 53332 12343 234788888
Q ss_pred HHHHHcCCCceEEEe-CCCCC-----HHHHHHHHhcCCCcCEEEEcHH
Q 005508 519 QCARKASDDLQVLGN-GDIYS-----YLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 519 ~i~~~~~~~IPVIgN-GdI~s-----~eDa~~~l~~~~gaDgVMIGRg 560 (693)
.+++.. ++||+.. .-... +..+..++. .||||+||=+-
T Consensus 190 ~lk~~~--~~pV~~D~sHs~G~~~~v~~~~~aAva--~Ga~Gl~iE~H 233 (266)
T PRK13398 190 VIKELS--HLPIIVDPSHATGRRELVIPMAKAAIA--AGADGLMIEVH 233 (266)
T ss_pred HHHhcc--CCCEEEeCCCcccchhhHHHHHHHHHH--cCCCEEEEecc
Confidence 888877 6899983 33333 555566665 58999998743
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=2.6 Score=45.39 Aligned_cols=146 Identities=9% Similarity=0.001 Sum_probs=90.9
Q ss_pred CeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec-
Q 005508 395 DLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR- 472 (693)
Q Consensus 395 ~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR- 472 (693)
.|+.+.|=+. +.+...+| + .+||+-|-+- |.--.+.++-+...++++-... .+++|-.=+-
T Consensus 78 VPV~lHLDHg~~~e~i~~a---i--~~GftSVM~D-----------gS~lp~eeNi~~Trevv~~Ah~-~gv~VEaElG~ 140 (285)
T PRK07709 78 VPVAIHLDHGSSFEKCKEA---I--DAGFTSVMID-----------ASHHPFEENVETTKKVVEYAHA-RNVSVEAELGT 140 (285)
T ss_pred CcEEEECCCCCCHHHHHHH---H--HcCCCEEEEe-----------CCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEEec
Confidence 4666666433 33333332 2 2466666663 3333345566677777766543 3566655442
Q ss_pred CCCCCC--------hhHHHHHHHHHHHcCCCEEEEecccccCccCCC--ccHHHHHHHHHHcCCCceEEEeCCCCCH-HH
Q 005508 473 TGYFEG--------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL--ADWDYIYQCARKASDDLQVLGNGDIYSY-LD 541 (693)
Q Consensus 473 ~G~~d~--------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~--Adw~~I~~i~~~~~~~IPVIgNGdI~s~-eD 541 (693)
+|-.++ -.+..+....+++.|+|+|.+.-+|..+.|.+. .||+.+++|++.+ ++|++.-|+=-.+ ++
T Consensus 141 igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~ 218 (285)
T PRK07709 141 VGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTAD 218 (285)
T ss_pred cCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHH
Confidence 221111 123445555567789999998888877888653 4899999999998 7999999987666 55
Q ss_pred HHHHHhcCCCcCEEEEcHHH
Q 005508 542 WNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 542 a~~~l~~~~gaDgVMIGRga 561 (693)
+.+++. .|+.=|=|++.+
T Consensus 219 ~~~ai~--~Gi~KiNi~T~l 236 (285)
T PRK07709 219 IEKAIS--LGTSKINVNTEN 236 (285)
T ss_pred HHHHHH--cCCeEEEeChHH
Confidence 666665 477666666554
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.26 E-value=2.9 Score=44.30 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=58.3
Q ss_pred cccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccC-----CC-ccHHHHHHHHHHcCCCceEEE--eC
Q 005508 463 VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYS-----KL-ADWDYIYQCARKASDDLQVLG--NG 534 (693)
Q Consensus 463 v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~yt-----g~-Adw~~I~~i~~~~~~~IPVIg--NG 534 (693)
.+.||.+=|+.. +.+++.++++.+.++|+++|.|+......... .+ .-.+.+..+++.+ ++||+. ++
T Consensus 97 ~~~pvi~si~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~ 171 (289)
T cd02810 97 PGQPLIASVGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPLLVKLSP 171 (289)
T ss_pred CCCeEEEEeccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCEEEEeCC
Confidence 478999877652 34678899999999999999998654332111 11 1235667777776 578774 34
Q ss_pred CCC--CHHHHHHHHhcCCCcCEEEEc
Q 005508 535 DIY--SYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 535 dI~--s~eDa~~~l~~~~gaDgVMIG 558 (693)
++. +..++.+++.+ .|||+|.+.
T Consensus 172 ~~~~~~~~~~a~~l~~-~Gad~i~~~ 196 (289)
T cd02810 172 YFDLEDIVELAKAAER-AGADGLTAI 196 (289)
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 442 23333444555 789999874
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.1 Score=45.78 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=77.7
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcc-----ccc----CCccccccCChHHHHHHHHHhccccccC
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI-----VVN----KGAGSCLLTKPMRMKGIIEATSGTVDKP 466 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~-----v~k----~G~GsaLl~rp~~l~eIV~av~~~v~iP 466 (693)
+++.=|.+.++++..+.++.+. +.|+..|||-+--|... +++ --.|++-..+++.+.+.+++ +-.
T Consensus 9 ~iiaVir~~~~~~a~~~~~al~-~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a-----GA~ 82 (196)
T PF01081_consen 9 KIIAVIRGDDPEDAVPIAEALI-EGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA-----GAQ 82 (196)
T ss_dssp SEEEEETTSSGGGHHHHHHHHH-HTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH-----T-S
T ss_pred CEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc-----CCC
Confidence 4566678889999999999887 67999999987544210 000 00011111122222222211 111
Q ss_pred EEEEecCCCCCChhHHHHHHH-----------------HHHHcCCCEEEEecccccCccCCCcc-HHHHHHHHHHcCCCc
Q 005508 467 ITIKVRTGYFEGKNRIDSLIA-----------------DIGTWGASAVTVHGRTRQQRYSKLAD-WDYIYQCARKASDDL 528 (693)
Q Consensus 467 VtVKiR~G~~d~~~~~~~la~-----------------~L~eaG~daItVHgRtr~q~ytg~Ad-w~~I~~i~~~~~~~I 528 (693)
+.| .++++ ++..+.++ ...++|++.|-+..-. ... ..|++.++.-++ ++
T Consensus 83 Fiv--SP~~~---~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~-------~~GG~~~ik~l~~p~p-~~ 149 (196)
T PF01081_consen 83 FIV--SPGFD---PEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAG-------ALGGPSYIKALRGPFP-DL 149 (196)
T ss_dssp EEE--ESS-----HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTT-------TTTHHHHHHHHHTTTT-T-
T ss_pred EEE--CCCCC---HHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecch-------hcCcHHHHHHHhccCC-CC
Confidence 111 12211 11111111 1234555555554221 112 579999998887 79
Q ss_pred eEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 529 QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 529 PVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
+++..|||. .+.+.+++. .|+.+|.+|+.+..+-
T Consensus 150 ~~~ptGGV~-~~N~~~~l~--ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 150 PFMPTGGVN-PDNLAEYLK--AGAVAVGGGSWLFPKD 183 (196)
T ss_dssp EEEEBSS---TTTHHHHHT--STTBSEEEESGGGSHH
T ss_pred eEEEcCCCC-HHHHHHHHh--CCCEEEEECchhcCHH
Confidence 999999994 688999887 5899999997665443
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.055 Score=58.96 Aligned_cols=56 Identities=25% Similarity=0.594 Sum_probs=46.8
Q ss_pred hccccCChhhhccCCCCCCCCCCCCCCCCChhhhhhcCCCCCCCCCCCcCcccccCCCCCcccccCc
Q 005508 98 KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTH 164 (693)
Q Consensus 98 ~~~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~~yl~~K~~di~~~Cp~f~~~G~Cp~G~~CRF~~sH 164 (693)
.+...+|..|..+ .|.-||.|-|+|+. .+-+. ..|.+|..+|.|--|-.|-|..+=
T Consensus 74 ~~~~~vcK~~l~g----lC~kgD~C~Flhe~-~~~k~------rec~ff~~~g~c~~~~~c~y~h~d 129 (325)
T KOG1040|consen 74 SRGKVVCKHWLRG----LCKKGDQCEFLHEY-DLTKM------RECKFFSLFGECTNGKDCPYLHGD 129 (325)
T ss_pred cCCceeehhhhhh----hhhccCcCcchhhh-hhccc------ccccccccccccccccCCcccCCC
Confidence 5667899999998 69999999999998 43332 259999999999999999997554
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=2.1 Score=45.33 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=70.8
Q ss_pred cccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEE-e-cccccCccCC-CccHHHHH
Q 005508 442 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV-H-GRTRQQRYSK-LADWDYIY 518 (693)
Q Consensus 442 GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItV-H-gRtr~q~ytg-~Adw~~I~ 518 (693)
||.++++.+++..+-+ .++||.+|.-.. -+.++....+..+.+.|..-|.| | |-+.-..+.. ..|+..|.
T Consensus 105 gs~~~~n~~LL~~va~-----tgkPVilk~G~~--~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~ 177 (250)
T PRK13397 105 GARNMQNFEFLKTLSH-----IDKPILFKRGLM--ATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVP 177 (250)
T ss_pred CcccccCHHHHHHHHc-----cCCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHH
Confidence 6778888776655432 489999987743 35677888899999999965554 5 3322222222 56888899
Q ss_pred HHHHHcCCCceEEEe----CCCCC--HHHHHHHHhcCCCcCEEEEc
Q 005508 519 QCARKASDDLQVLGN----GDIYS--YLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 519 ~i~~~~~~~IPVIgN----GdI~s--~eDa~~~l~~~~gaDgVMIG 558 (693)
.+++.. ++|||.. +|... +.-+..++. .||||+||=
T Consensus 178 ~lk~~~--~lPVivd~SHs~G~r~~v~~~a~AAvA--~GAdGl~IE 219 (250)
T PRK13397 178 IIQQKT--DLPIIVDVSHSTGRRDLLLPAAKIAKA--VGANGIMME 219 (250)
T ss_pred HHHHHh--CCCeEECCCCCCcccchHHHHHHHHHH--hCCCEEEEE
Confidence 999877 6999885 34332 123444454 599999976
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=2 Score=45.96 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHhhh-CCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhH
Q 005508 405 YPDTLARTVELIDQQ-CTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~-aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~ 481 (693)
+.+.+.+-++.+. . .|+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+
T Consensus 22 D~~~~~~li~~l~-~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~---~~t~~ 87 (293)
T PRK04147 22 DEQGLRRLVRFNI-EKQGIDGLYVGG----------STGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS---VNTAE 87 (293)
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEECC----------CccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC---CCHHH
Confidence 6788888888887 5 7999998874 222222223344445555555544 4788885532 34578
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCccCCC---ccHHHHHHHHHHcCCCceEEE-e-----CCCCCHHHHHHHHhcCCCc
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLG-N-----GDIYSYLDWNKHKSDCPEL 552 (693)
Q Consensus 482 ~~~la~~L~eaG~daItVHgRtr~q~ytg~---Adw~~I~~i~~~~~~~IPVIg-N-----GdI~s~eDa~~~l~~~~ga 552 (693)
+.++++.+++.|+|+|.+..- .|.++ .-++|+.+|.+.+ ++||+. | |--.+++.+.++.. ..++
T Consensus 88 ai~~a~~a~~~Gad~v~v~~P----~y~~~~~~~l~~~f~~va~a~--~lPv~iYn~P~~tg~~l~~~~l~~L~~-~pnv 160 (293)
T PRK04147 88 AQELAKYATELGYDAISAVTP----FYYPFSFEEICDYYREIIDSA--DNPMIVYNIPALTGVNLSLDQFNELFT-LPKV 160 (293)
T ss_pred HHHHHHHHHHcCCCEEEEeCC----cCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCchhhccCCCHHHHHHHhc-CCCE
Confidence 999999999999999999752 23222 3467888998887 577663 2 55567887777653 3555
Q ss_pred CEEEE
Q 005508 553 ASCMI 557 (693)
Q Consensus 553 DgVMI 557 (693)
-||=.
T Consensus 161 vgiK~ 165 (293)
T PRK04147 161 IGVKQ 165 (293)
T ss_pred EEEEe
Confidence 55533
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.3 Score=46.89 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=73.5
Q ss_pred cccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEE-eccccc--CccCCCccHHHHH
Q 005508 442 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV-HGRTRQ--QRYSKLADWDYIY 518 (693)
Q Consensus 442 GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItV-HgRtr~--q~ytg~Adw~~I~ 518 (693)
||.++.+..++..+- .+++||.+|.-+. .+.++....+..+.+.|..-|+| |-.+.. .......||..|.
T Consensus 115 ~s~~~~n~~LL~~~a-----~~gkPVilk~G~~--~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~ 187 (260)
T TIGR01361 115 GARNMQNFELLKEVG-----KQGKPVLLKRGMG--NTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVP 187 (260)
T ss_pred CcccccCHHHHHHHh-----cCCCcEEEeCCCC--CCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHH
Confidence 677888888655542 3589999987764 24577888899999999966655 632422 2223347999999
Q ss_pred HHHHHcCCCceEEEe-CCCCC-----HHHHHHHHhcCCCcCEEEEcH
Q 005508 519 QCARKASDDLQVLGN-GDIYS-----YLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 519 ~i~~~~~~~IPVIgN-GdI~s-----~eDa~~~l~~~~gaDgVMIGR 559 (693)
.+++.. ++||+.+ +-... +.-+..++. .||||+||=+
T Consensus 188 ~lk~~~--~~pV~~ds~Hs~G~r~~~~~~~~aAva--~Ga~gl~iE~ 230 (260)
T TIGR01361 188 VLKKET--HLPIIVDPSHAAGRRDLVIPLAKAAIA--AGADGLMIEV 230 (260)
T ss_pred HHHHhh--CCCEEEcCCCCCCccchHHHHHHHHHH--cCCCEEEEEe
Confidence 999887 6999993 33222 344445554 5899998864
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=93.03 E-value=3.3 Score=45.52 Aligned_cols=133 Identities=8% Similarity=0.100 Sum_probs=88.4
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCC-CcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc--cCEEEEec
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVR 472 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG-~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~--iPVtVKiR 472 (693)
++-.-+...+++.+.+.++.+. ..| |..|-|-.|- .+++.-.+.|+++++.++ +.|.+-.-
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~-~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDaN 196 (365)
T cd03318 133 PVAWTLASGDTERDIAEAEEML-EAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDVN 196 (365)
T ss_pred EEEEEEeCCCHHHHHHHHHHHH-hCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 3333344445555544443333 247 9999886531 134445667788887763 44555444
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc
Q 005508 473 TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 552 (693)
Q Consensus 473 ~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga 552 (693)
-+| +..++.++++.|++.|+.+|- |-. .+-+|+-.+++++.. .+||.+.=.+.+..++.+++.. ..+
T Consensus 197 ~~~--~~~~A~~~~~~l~~~~~~~iE-------eP~-~~~~~~~~~~l~~~~--~~pia~dE~~~~~~~~~~~i~~-~~~ 263 (365)
T cd03318 197 QAW--DESTAIRALPRLEAAGVELIE-------QPV-PRENLDGLARLRSRN--RVPIMADESVSGPADAFELARR-GAA 263 (365)
T ss_pred CCC--CHHHHHHHHHHHHhcCcceee-------CCC-CcccHHHHHHHHhhc--CCCEEcCcccCCHHHHHHHHHh-CCC
Confidence 455 346799999999999876652 222 234788888998887 6999987778999999998886 678
Q ss_pred CEEEE
Q 005508 553 ASCMI 557 (693)
Q Consensus 553 DgVMI 557 (693)
|.+++
T Consensus 264 d~~~~ 268 (365)
T cd03318 264 DVFSL 268 (365)
T ss_pred CeEEE
Confidence 88864
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.1 Score=48.04 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=62.4
Q ss_pred HHHHHHHhccccc--cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcC---C
Q 005508 452 MKGIIEATSGTVD--KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKAS---D 526 (693)
Q Consensus 452 l~eIV~av~~~v~--iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~---~ 526 (693)
+.+.|+.+++... .+|.|=++. .+=+..+.++|+|.|-+.. .+.+.++++.+... .
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~t---------leea~~A~~~GaDiI~LDn----------~~~e~l~~~v~~~~~~~~ 228 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECES---------LEEAKNAMNAGADIVMCDN----------MSVEEIKEVVAYRNANYP 228 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCC---------HHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhhccCC
Confidence 4566666666552 456664442 2334445579999887642 35566666666432 1
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 527 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
++.|++.|+| +++.+.++.. +|+|.|.+|.....-||
T Consensus 229 ~~~ieAsGgI-t~~ni~~ya~--~GvD~IsvG~l~~sa~~ 265 (273)
T PRK05848 229 HVLLEASGNI-TLENINAYAK--SGVDAISSGSLIHQATW 265 (273)
T ss_pred CeEEEEECCC-CHHHHHHHHH--cCCCEEEeChhhcCCCc
Confidence 5779999999 9999999776 79999999975543343
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.99 E-value=2.8 Score=45.16 Aligned_cols=146 Identities=9% Similarity=0.009 Sum_probs=90.1
Q ss_pred CeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec-
Q 005508 395 DLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR- 472 (693)
Q Consensus 395 ~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR- 472 (693)
.|+.+.|=+. +.+...+|. ++||+-|-+- |.--.+.++-+...++++-.. ..+++|-.=|-
T Consensus 78 vPV~lHLDHg~~~e~i~~ai-----~~GftSVM~D-----------gS~l~~eeNi~~T~~vve~Ah-~~gv~VEaElG~ 140 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAI-----DAGFTSVMID-----------ASHSPFEENVATTKKVVEYAH-EKGVSVEAELGT 140 (286)
T ss_pred CCEEEECCCCCCHHHHHHHH-----HcCCCEEEEe-----------CCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEEec
Confidence 4666666433 444443322 2466666663 333345556677777776654 23555554432
Q ss_pred C-CCCCC-------hhHHHHHHHHHHHcCCCEEEEecccccCccCCC--ccHHHHHHHHHHcCCCceEEEeCCCCCH-HH
Q 005508 473 T-GYFEG-------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL--ADWDYIYQCARKASDDLQVLGNGDIYSY-LD 541 (693)
Q Consensus 473 ~-G~~d~-------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~--Adw~~I~~i~~~~~~~IPVIgNGdI~s~-eD 541 (693)
+ |..+. -.+..+....+++.|+|+|.|.-+|..+.|.+. .||+.+++|++.+ ++|++.-|+=-.+ ++
T Consensus 141 vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~ 218 (286)
T PRK08610 141 VGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKD 218 (286)
T ss_pred cCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHH
Confidence 2 21111 123444555567899999999888888888653 4899999999998 7999999987766 55
Q ss_pred HHHHHhcCCCcCEEEEcHHH
Q 005508 542 WNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 542 a~~~l~~~~gaDgVMIGRga 561 (693)
+.+++. .|+.=|=|+..+
T Consensus 219 ~~~ai~--~GI~KiNi~T~l 236 (286)
T PRK08610 219 IQKAIP--FGTAKINVNTEN 236 (286)
T ss_pred HHHHHH--CCCeEEEeccHH
Confidence 666665 466666555443
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.1 Score=48.05 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=48.6
Q ss_pred HHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 486 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
+..+.+.|+|+|-+- ....+.++++++....++||.+.||| +.+.+.++.. +|||+|.+|.--.
T Consensus 201 a~~A~~~gaDyI~lD----------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~--~Gvd~IAvg~l~~ 264 (277)
T PRK08072 201 VREAVAAGADIIMFD----------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGG--TGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHcCCCEEEEC----------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH--cCCCEEEEChhhc
Confidence 444567999999882 23446778877765335889999999 8999988776 7999999996433
|
|
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=92.92 E-value=2 Score=45.10 Aligned_cols=130 Identities=9% Similarity=0.069 Sum_probs=87.4
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecC
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT 473 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~ 473 (693)
++..-|.+.+++.+.+ ++.+. ..||..|-|-+| ...++.-.+.|++|++.+ ++.+.|-.--
T Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~-~~Gf~~~KiKvg---------------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 136 (263)
T cd03320 74 PVNALLPAGDAAALGE-AKAAY-GGGYRTVKLKVG---------------ATSFEEDLARLRALREALPADAKLRLDANG 136 (263)
T ss_pred ceeEEecCCCHHHHHH-HHHHH-hCCCCEEEEEEC---------------CCChHHHHHHHHHHHHHcCCCCeEEEeCCC
Confidence 3444455666644444 44444 359999998654 123455567788888776 3445444444
Q ss_pred CCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 474 G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 553 (693)
+| +..++.++++.|++.++.+| +|-.. +.|++..+++. . ++||.+.=.+.+..++..++.. ..+|
T Consensus 137 ~w--~~~~A~~~~~~l~~~~i~~i-------EqP~~-~~d~~~~~~l~--~--~~PIa~dEs~~~~~~~~~~~~~-~~~d 201 (263)
T cd03320 137 GW--SLEEALAFLEALAAGRIEYI-------EQPLP-PDDLAELRRLA--A--GVPIALDESLRRLDDPLALAAA-GALG 201 (263)
T ss_pred CC--CHHHHHHHHHhhcccCCceE-------ECCCC-hHHHHHHHHhh--c--CCCeeeCCccccccCHHHHHhc-CCCC
Confidence 56 35789999999999888776 34332 34666666666 4 6999998889999999998886 6788
Q ss_pred EEEE
Q 005508 554 SCMI 557 (693)
Q Consensus 554 gVMI 557 (693)
.|++
T Consensus 202 ~v~~ 205 (263)
T cd03320 202 ALVL 205 (263)
T ss_pred EEEE
Confidence 8874
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.59 Score=51.37 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=57.9
Q ss_pred CCCEEEEecccccCccCCCccHHHHHHHHH-----Hc-CCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 493 GASAVTVHGRTRQQRYSKLADWDYIYQCAR-----KA-SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 493 G~daItVHgRtr~q~ytg~Adw~~I~~i~~-----~~-~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
|+..|-|-.|.-. +-..|.+...++.. .. +.++-+|+-+||.+++|+..+.. .|+|+|.||..++..|+
T Consensus 251 ga~iIGINNRdL~---Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~--~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 251 GVELIGINNRSLE---TFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQN--AGVKAVLVGESLVKQDD 325 (338)
T ss_pred CCCEEEEeCCCCC---cceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHH--CCCCEEEECHHHhCCCC
Confidence 7777777777543 23356777777766 33 23577899999999999998665 69999999999999998
Q ss_pred chhHHHh
Q 005508 567 IFTEIKE 573 (693)
Q Consensus 567 iF~eIke 573 (693)
.-..+++
T Consensus 326 p~~~l~~ 332 (338)
T PLN02460 326 PGKGIAG 332 (338)
T ss_pred HHHHHHH
Confidence 7666654
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.84 E-value=3 Score=45.03 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=93.9
Q ss_pred CCCeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe
Q 005508 393 SEDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 393 ~e~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi 471 (693)
...|+.++|=+. +.+...+|. .+||+-|-+- |.--.+.++-++..++++-... .++.|-.=+
T Consensus 73 ~~VPValHLDHg~~~e~i~~ai-----~~GFtSVM~D-----------gS~lp~eeNi~~T~evv~~Ah~-~gv~VEaEl 135 (286)
T PRK12738 73 YNMPLALHLDHHESLDDIRRKV-----HAGVRSAMID-----------GSHFPFAENVKLVKSVVDFCHS-QDCSVEAEL 135 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHH-----HcCCCeEeec-----------CCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEE
Confidence 356788888544 444444433 3588887774 3222345667777777776654 244444433
Q ss_pred c-C-CCCCC---------hhHHHHHHHHHHHcCCCEEEEecccccCccCCC--ccHHHHHHHHHHcCCCceEEEeCCCCC
Q 005508 472 R-T-GYFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL--ADWDYIYQCARKASDDLQVLGNGDIYS 538 (693)
Q Consensus 472 R-~-G~~d~---------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~--Adw~~I~~i~~~~~~~IPVIgNGdI~s 538 (693)
- + |..++ -.+..+..+.+++.|+|+|.|.-.|..+.|.+. .||+.+++|++.+ ++|++.-|+=-.
T Consensus 136 G~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~ 213 (286)
T PRK12738 136 GRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV--DVPLVLHGASDV 213 (286)
T ss_pred EeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCC
Confidence 2 1 11111 113445555567789999999888888888653 5899999999998 799998886655
Q ss_pred H-HHHHHHHhcCCCcCEEEEcHHHh
Q 005508 539 Y-LDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 539 ~-eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
+ +++.+++. .|+.=|=|++.+.
T Consensus 214 ~~e~~~kai~--~GI~KiNi~T~l~ 236 (286)
T PRK12738 214 PDEFVRRTIE--LGVTKVNVATELK 236 (286)
T ss_pred CHHHHHHHHH--cCCeEEEeCcHHH
Confidence 5 44555555 5777676665553
|
|
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=92.84 E-value=3 Score=45.29 Aligned_cols=129 Identities=12% Similarity=0.139 Sum_probs=87.7
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCC
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTG 474 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G 474 (693)
++...+...+++.+.+.++.+. ..||..|-|-.| | ..-.++|+++++.+ ++.|.|-.--+
T Consensus 123 ~~y~~~~~~~~~~~~~~a~~~~-~~Gf~~~KiKv~-~-----------------~~d~~~v~~vr~~~~~~~l~vDaN~~ 183 (324)
T TIGR01928 123 PAGAVSGLANDEQMLKQIESLK-ATGYKRIKLKIT-P-----------------QIMHQLVKLRRLRFPQIPLVIDANES 183 (324)
T ss_pred EEeEEcCCCCHHHHHHHHHHHH-HcCCcEEEEEeC-C-----------------chhHHHHHHHHHhCCCCcEEEECCCC
Confidence 4444455567788877777665 459999988643 1 11235677777766 33444444445
Q ss_pred CCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCE
Q 005508 475 YFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 554 (693)
Q Consensus 475 ~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDg 554 (693)
|+. ..+ ..++.|++.++.+|- |-. .+-||+-.+++++.. ++||.+.=.+++..++..++.. ..+|.
T Consensus 184 ~~~--~~a-~~~~~l~~~~~~~iE-------eP~-~~~~~~~~~~l~~~~--~~pia~dEs~~~~~~~~~~~~~-~~~dv 249 (324)
T TIGR01928 184 YDL--QDF-PRLKELDRYQLLYIE-------EPF-KIDDLSMLDELAKGT--ITPICLDESITSLDDARNLIEL-GNVKV 249 (324)
T ss_pred CCH--HHH-HHHHHHhhCCCcEEE-------CCC-ChhHHHHHHHHHhhc--CCCEeeCCCcCCHHHHHHHHHc-CCCCE
Confidence 643 333 567889988877763 222 234788889999988 6999998889999999998886 67888
Q ss_pred EEE
Q 005508 555 CMI 557 (693)
Q Consensus 555 VMI 557 (693)
+++
T Consensus 250 i~~ 252 (324)
T TIGR01928 250 INI 252 (324)
T ss_pred EEe
Confidence 863
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=3 Score=46.80 Aligned_cols=142 Identities=13% Similarity=0.014 Sum_probs=96.5
Q ss_pred cCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCc---ccccCCcccc--c--------------cCChHHHHHHHHHhccc
Q 005508 402 CGAYPDTLARTVELIDQQCTVDFIDINMGCPID---IVVNKGAGSC--L--------------LTKPMRMKGIIEATSGT 462 (693)
Q Consensus 402 ~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~---~v~k~G~Gsa--L--------------l~rp~~l~eIV~av~~~ 462 (693)
.+.+++.+.+-|+.+. ..||..|-|.+|-|-. .....+.|.. . ....+...+.|++|++.
T Consensus 124 ~~~~~~~~~~~a~~~~-~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~ 202 (404)
T PRK15072 124 NGRDIDELLDDVARHL-ELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK 202 (404)
T ss_pred CCCCHHHHHHHHHHHH-HcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence 4557777755555554 3599999998764310 0000000000 0 01124456889999998
Q ss_pred c--ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHH
Q 005508 463 V--DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL 540 (693)
Q Consensus 463 v--~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~e 540 (693)
+ ++.|.|-.--+|+ ..++.++++.|++.++..| +|-. ...+++-.+++++.. .+||.+.=.+++..
T Consensus 203 ~G~~~~l~vDaN~~w~--~~~A~~~~~~l~~~~l~~i-------EeP~-~~~d~~~~~~L~~~~--~iPIa~dEs~~~~~ 270 (404)
T PRK15072 203 FGFDLHLLHDVHHRLT--PIEAARLGKSLEPYRLFWL-------EDPT-PAENQEAFRLIRQHT--TTPLAVGEVFNSIW 270 (404)
T ss_pred hCCCceEEEECCCCCC--HHHHHHHHHhccccCCcEE-------ECCC-CccCHHHHHHHHhcC--CCCEEeCcCccCHH
Confidence 7 4566666665664 5789999999999888777 3333 345788889999987 69999888899999
Q ss_pred HHHHHHhcCCCcCEEEE
Q 005508 541 DWNKHKSDCPELASCMI 557 (693)
Q Consensus 541 Da~~~l~~~~gaDgVMI 557 (693)
++..++.. ..+|.|.+
T Consensus 271 ~~~~li~~-~a~dii~~ 286 (404)
T PRK15072 271 DCKQLIEE-QLIDYIRT 286 (404)
T ss_pred HHHHHHHc-CCCCEEec
Confidence 99999886 67898885
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.35 Score=55.57 Aligned_cols=70 Identities=4% Similarity=0.027 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+..+++..|.+.|++.|.|..-.+. ...-+++|++|++..| +++||+ |+|.|.+.+..++. .|||+|-||
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~--aGad~v~vg 296 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVE--AGADIVKVG 296 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHH--cCCCEEEEC
Confidence 5678889999999999998644333 2345789999999987 577664 99999999999876 699998755
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=3 Score=42.56 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=82.8
Q ss_pred eEEEEecCC----CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe
Q 005508 396 LFGVQICGA----YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 396 p~gvQL~G~----~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi 471 (693)
.+..|..-. +++...+.|+.+. .+|+.+|.++ . .+.++++++.+++||...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~a~a~~-~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~ 63 (221)
T PRK01130 8 IVSCQALPGEPLHSPEIMAAMALAAV-QGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGII 63 (221)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHH-HCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEE
Confidence 445666643 3566777777666 6788888873 0 3567777777899987554
Q ss_pred cCCCCC-C--hhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhc
Q 005508 472 RTGYFE-G--KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD 548 (693)
Q Consensus 472 R~G~~d-~--~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~ 548 (693)
+--+.. . .....+.++.+.++|+++|++-.+... ...+....+++..+++. + .+||+. ++.+.+++..+..
T Consensus 64 ~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~-~p~~~~~~~~i~~~~~~-~-~i~vi~--~v~t~ee~~~a~~- 137 (221)
T PRK01130 64 KRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRP-RPDGETLAELVKRIKEY-P-GQLLMA--DCSTLEEGLAAQK- 137 (221)
T ss_pred ecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCCCHHHHHHHHHhC-C-CCeEEE--eCCCHHHHHHHHH-
Confidence 411000 0 001234678889999999988654321 00112234667777764 3 688885 6789999987655
Q ss_pred CCCcCEEEEc
Q 005508 549 CPELASCMIA 558 (693)
Q Consensus 549 ~~gaDgVMIG 558 (693)
.|+|.+.++
T Consensus 138 -~G~d~i~~~ 146 (221)
T PRK01130 138 -LGFDFIGTT 146 (221)
T ss_pred -cCCCEEEcC
Confidence 689999774
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.1 Score=48.94 Aligned_cols=102 Identities=6% Similarity=-0.025 Sum_probs=69.0
Q ss_pred ccccC-ChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcC--CCEEEEecccccCccCCCccHHHHHH
Q 005508 443 SCLLT-KPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG--ASAVTVHGRTRQQRYSKLADWDYIYQ 519 (693)
Q Consensus 443 saLl~-rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG--~daItVHgRtr~q~ytg~Adw~~I~~ 519 (693)
+.+.+ +++...+.++.++.. .+ .|=+.+|..+ +..+.+..|.++| +|.|.+..- +.++. .-++.|+.
T Consensus 61 ~i~hK~~~E~~~sfvrk~k~~-~L--~v~~SvG~t~---e~~~r~~~lv~a~~~~d~i~~D~a---hg~s~-~~~~~i~~ 130 (321)
T TIGR01306 61 YIMHRFDEESRIPFIKDMQER-GL--FASISVGVKA---CEYEFVTQLAEEALTPEYITIDIA---HGHSN-SVINMIKH 130 (321)
T ss_pred EEEecCCHHHHHHHHHhcccc-cc--EEEEEcCCCH---HHHHHHHHHHhcCCCCCEEEEeCc---cCchH-HHHHHHHH
Confidence 34555 666666666665432 23 4445666543 3345666677778 699988522 12221 34678999
Q ss_pred HHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 520 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 520 i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+++.. +.|++..|.|.+++++..+++ .|||+|.+|
T Consensus 131 i~~~~--p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~ 165 (321)
T TIGR01306 131 IKTHL--PDSFVIAGNVGTPEAVRELEN--AGADATKVG 165 (321)
T ss_pred HHHhC--CCCEEEEecCCCHHHHHHHHH--cCcCEEEEC
Confidence 99988 478899999999999999776 699999877
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.42 Score=57.86 Aligned_cols=78 Identities=8% Similarity=0.006 Sum_probs=57.9
Q ss_pred HcCCCEEEEeccc---ccCccCCCccHHHHHHHHHHcCC-CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 491 TWGASAVTVHGRT---RQQRYSKLADWDYIYQCARKASD-DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 491 eaG~daItVHgRt---r~q~ytg~Adw~~I~~i~~~~~~-~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
++|+|+|.+-.-. .......+..|+.++++++.+.. .+||++-||| +++++.+++. .|++||.+-++++..++
T Consensus 126 ~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~--~Ga~giAvisai~~a~d 202 (755)
T PRK09517 126 VALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAA--TGIDGLCVVSAIMAAAN 202 (755)
T ss_pred CCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHH--cCCCEEEEehHhhCCCC
Confidence 3469999885421 12233345689999999988720 2999999999 8999998776 69999999999998777
Q ss_pred chhHH
Q 005508 567 IFTEI 571 (693)
Q Consensus 567 iF~eI 571 (693)
...-+
T Consensus 203 ~~~a~ 207 (755)
T PRK09517 203 PAAAA 207 (755)
T ss_pred HHHHH
Confidence 44333
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.61 E-value=2.9 Score=45.00 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=90.6
Q ss_pred CCeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 394 EDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 394 e~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
..|+.+.|=+. +.+...+|. .+||+-|-+- |.--.+.++-+...++++-.... ++.|-.=+-
T Consensus 74 ~VPValHLDH~~~~e~i~~ai-----~~GftSVMiD-----------gS~lp~eeNi~~T~~vv~~Ah~~-gvsVEaElG 136 (284)
T PRK12737 74 NIPLALHLDHHEDLDDIKKKV-----RAGIRSVMID-----------GSHLSFEENIAIVKEVVEFCHRY-DASVEAELG 136 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHH-----HcCCCeEEec-----------CCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEEe
Confidence 34666666433 333332222 2466666663 33223445666777777766542 444444332
Q ss_pred -C-CCCCC---------hhHHHHHHHHHHHcCCCEEEEecccccCccCCC--ccHHHHHHHHHHcCCCceEEEeCCCCCH
Q 005508 473 -T-GYFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL--ADWDYIYQCARKASDDLQVLGNGDIYSY 539 (693)
Q Consensus 473 -~-G~~d~---------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~--Adw~~I~~i~~~~~~~IPVIgNGdI~s~ 539 (693)
+ |..++ -.+..+..+.+++.|+|+|.|.-.|..+.|.+. .||+.+++|++.+ ++|++.-|+=-.+
T Consensus 137 ~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~ 214 (284)
T PRK12737 137 RLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV--SIPLVLHGASGVP 214 (284)
T ss_pred eccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCC
Confidence 1 21111 113345555566799999998877777778654 4899999999988 6999988876555
Q ss_pred H-HHHHHHhcCCCcCEEEEcHHHhh
Q 005508 540 L-DWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 540 e-Da~~~l~~~~gaDgVMIGRgaL~ 563 (693)
+ ++.+++. .|+.=|=|++.+..
T Consensus 215 ~e~~~kai~--~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 215 DEDVKKAIS--LGICKVNVATELKI 237 (284)
T ss_pred HHHHHHHHH--CCCeEEEeCcHHHH
Confidence 4 4556655 57888878877643
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.96 Score=49.67 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHH--cCCCEEEEecccccCccCCCccHHHHHHHHHHcCC
Q 005508 449 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT--WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD 526 (693)
Q Consensus 449 p~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~e--aG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~ 526 (693)
++.-.+.++.++.....-+.| ..|..+ ++ .+.+..|.+ +|+|+|+|.-- +.++. .-.+.|+.+++..|
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~--~d-~er~~~L~~~~~g~D~iviD~A---hGhs~-~~i~~ik~ik~~~P- 150 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSD--AD-FEKTKQILALSPALNFICIDVA---NGYSE-HFVQFVAKAREAWP- 150 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCH--HH-HHHHHHHHhcCCCCCEEEEECC---CCcHH-HHHHHHHHHHHhCC-
Confidence 455556666676443223334 444432 23 445555555 69999999532 22222 24578999999987
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 527 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+++| ..|.|-|++-+..++. .|||+|=||=|
T Consensus 151 ~~~v-IaGNV~T~e~a~~Li~--aGAD~vKVGIG 181 (346)
T PRK05096 151 DKTI-CAGNVVTGEMVEELIL--SGADIVKVGIG 181 (346)
T ss_pred CCcE-EEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 5665 5699999999999776 69999865533
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=92.43 E-value=1.6 Score=44.26 Aligned_cols=113 Identities=19% Similarity=0.043 Sum_probs=67.8
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEE--EEecCCCCC-ChhHHHHHH
Q 005508 410 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT--IKVRTGYFE-GKNRIDSLI 486 (693)
Q Consensus 410 ~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVt--VKiR~G~~d-~~~~~~~la 486 (693)
++.|+.+. ..|.-+|-+|- .+=|+++++.+++||. +|-.....+ ...-+.+=+
T Consensus 2 ~~mA~Aa~-~gGA~giR~~~-----------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev 57 (192)
T PF04131_consen 2 ARMAKAAE-EGGAVGIRANG-----------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEV 57 (192)
T ss_dssp HHHHHHHH-HCT-SEEEEES-----------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHH
T ss_pred HHHHHHHH-HCCceEEEcCC-----------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHH
Confidence 33444444 56888999982 1336778899999986 443221111 112245667
Q ss_pred HHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 487 ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 487 ~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
+.|.++|++.|.+.+-.|. |. ..-.+++.+|++.. ++.-.||.|.+++..+.. .|+|.|.
T Consensus 58 ~~l~~aGadIIAlDaT~R~-Rp--~~l~~li~~i~~~~-----~l~MADist~ee~~~A~~--~G~D~I~ 117 (192)
T PF04131_consen 58 DALAEAGADIIALDATDRP-RP--ETLEELIREIKEKY-----QLVMADISTLEEAINAAE--LGFDIIG 117 (192)
T ss_dssp HHHHHCT-SEEEEE-SSSS--S--S-HHHHHHHHHHCT-----SEEEEE-SSHHHHHHHHH--TT-SEEE
T ss_pred HHHHHcCCCEEEEecCCCC-CC--cCHHHHHHHHHHhC-----cEEeeecCCHHHHHHHHH--cCCCEEE
Confidence 7888999999999875443 22 34567899998854 445579999999999876 5899875
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=92.42 E-value=3.5 Score=45.09 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=84.9
Q ss_pred eEEEEecCCCH-HHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc-cCEEEEecC
Q 005508 396 LFGVQICGAYP-DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD-KPITIKVRT 473 (693)
Q Consensus 396 p~gvQL~G~~p-e~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~-iPVtVKiR~ 473 (693)
++...+...++ +.+.+.++.+. +.||..|-|..| +..-.+.|++|++.++ +.|.+-..-
T Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~~-~~Gf~~~KiKv~------------------~~~d~~~l~~vr~~~g~~~l~lDaN~ 187 (354)
T cd03317 127 PVGVSIGIQDDVEQLLKQIERYL-EEGYKRIKLKIK------------------PGWDVEPLKAVRERFPDIPLMADANS 187 (354)
T ss_pred EeeEEEeCCCcHHHHHHHHHHHH-HcCCcEEEEecC------------------hHHHHHHHHHHHHHCCCCeEEEECCC
Confidence 33333433333 66666666655 359999988653 1223456777777763 333333334
Q ss_pred CCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 474 G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 553 (693)
+|+. .++ .+++.|++.++.+| +|-. .+.||+-.+++++.. .+||.+.=.+++.+++..++.. ..+|
T Consensus 188 ~~~~--~~a-~~~~~l~~~~i~~i-------EeP~-~~~d~~~~~~l~~~~--~~pia~dEs~~~~~~~~~~~~~-~~~d 253 (354)
T cd03317 188 AYTL--ADI-PLLKRLDEYGLLMI-------EQPL-AADDLIDHAELQKLL--KTPICLDESIQSAEDARKAIEL-GACK 253 (354)
T ss_pred CCCH--HHH-HHHHHhhcCCccEE-------ECCC-ChhHHHHHHHHHhhc--CCCEEeCCccCCHHHHHHHHHc-CCCC
Confidence 5643 445 47888888887766 2322 335788888898887 6999988889999999998876 6788
Q ss_pred EEEE
Q 005508 554 SCMI 557 (693)
Q Consensus 554 gVMI 557 (693)
.|.+
T Consensus 254 ~~~i 257 (354)
T cd03317 254 IINI 257 (354)
T ss_pred EEEe
Confidence 8875
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=92.38 E-value=2.5 Score=45.18 Aligned_cols=133 Identities=14% Similarity=0.186 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
|.+.+.+-++.+. ..|+++|=++.. .|-...-..+.-.++++.+.+.+ .+||.+-+ +. +..++
T Consensus 19 D~~~l~~l~~~l~-~~Gv~gi~v~Gs----------tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv--~~--~t~~~ 83 (289)
T cd00951 19 DEDAYRAHVEWLL-SYGAAALFAAGG----------TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGA--GY--GTATA 83 (289)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHhCCCCCEEEec--CC--CHHHH
Confidence 6778888888877 579999988741 22222223333344555544444 57888865 32 45788
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCC---ccHHHHHHHHHHcCCCceEEE---eCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARKASDDLQVLG---NGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~---Adw~~I~~i~~~~~~~IPVIg---NGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
.++++.++++|+++|.+..- .|..+ .-.+|+..|.+.+ ++||+. .|--.+++.+.++..++..+-||=
T Consensus 84 i~~a~~a~~~Gad~v~~~pP----~y~~~~~~~i~~~f~~v~~~~--~~pi~lYn~~g~~l~~~~l~~L~~~~pnivgiK 157 (289)
T cd00951 84 IAYAQAAEKAGADGILLLPP----YLTEAPQEGLYAHVEAVCKST--DLGVIVYNRANAVLTADSLARLAERCPNLVGFK 157 (289)
T ss_pred HHHHHHHHHhCCCEEEECCC----CCCCCCHHHHHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHhcCCCEEEEE
Confidence 99999999999999988532 23222 2367788888877 578663 243457777777654235555554
Q ss_pred Ec
Q 005508 557 IA 558 (693)
Q Consensus 557 IG 558 (693)
-.
T Consensus 158 ds 159 (289)
T cd00951 158 DG 159 (289)
T ss_pred eC
Confidence 33
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.33 E-value=3.8 Score=44.18 Aligned_cols=148 Identities=11% Similarity=0.070 Sum_probs=91.3
Q ss_pred CCeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 394 EDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 394 e~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
..|+.++|=+. +.+...+|. .+||+-|-+- |.--.+.++-++..++++-... .++.|-.=+-
T Consensus 74 ~VPValHLDH~~~~e~i~~ai-----~~GftSVM~D-----------gS~lp~eeNi~~T~~vv~~Ah~-~gvsVEaElG 136 (284)
T PRK12857 74 SVPVALHLDHGTDFEQVMKCI-----RNGFTSVMID-----------GSKLPLEENIALTKKVVEIAHA-VGVSVEAELG 136 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHH-----HcCCCeEEEe-----------CCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEee
Confidence 45677777443 444333322 2477777663 3333455667777777776643 3444444332
Q ss_pred -CC-CCCC---------hhHHHHHHHHHHHcCCCEEEEecccccCccCCC--ccHHHHHHHHHHcCCCceEEEeCCCCCH
Q 005508 473 -TG-YFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL--ADWDYIYQCARKASDDLQVLGNGDIYSY 539 (693)
Q Consensus 473 -~G-~~d~---------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~--Adw~~I~~i~~~~~~~IPVIgNGdI~s~ 539 (693)
+| ..+. -.+..+..+.+++.|+|+|.|.-.|..+.|.+. .||+.+++|++.+ ++|++.-|+=-.+
T Consensus 137 ~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~ 214 (284)
T PRK12857 137 KIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV--NIPIVLHGSSGVP 214 (284)
T ss_pred ecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCC
Confidence 11 1111 113344445557789999998888877788653 5899999999998 6999988876555
Q ss_pred H-HHHHHHhcCCCcCEEEEcHHHh
Q 005508 540 L-DWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 540 e-Da~~~l~~~~gaDgVMIGRgaL 562 (693)
+ ++.+++. .|+.=|=|++.+.
T Consensus 215 ~e~~~~ai~--~Gi~KiNi~T~~~ 236 (284)
T PRK12857 215 DEAIRKAIS--LGVRKVNIDTNIR 236 (284)
T ss_pred HHHHHHHHH--cCCeEEEeCcHHH
Confidence 4 4555655 5777777776654
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.5 Score=46.59 Aligned_cols=83 Identities=8% Similarity=0.089 Sum_probs=56.0
Q ss_pred HHHHHhccccc--cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEE
Q 005508 454 GIIEATSGTVD--KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL 531 (693)
Q Consensus 454 eIV~av~~~v~--iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVI 531 (693)
.-++.+++.++ .+|.|=++. .+=+..+.++|+|+|-+-. ...+.++++.+.+...+||+
T Consensus 166 ~av~~~r~~~~~~~~Igvev~t---------~eea~~A~~~gaDyI~ld~----------~~~e~lk~~v~~~~~~ipi~ 226 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEVES---------LEEAEEAAEAGADIIMLDN----------MKPEEIKEAVQLLKGRVLLE 226 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEeCC---------HHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhcCCCcEE
Confidence 34555555552 444443332 2234455689999998843 33366777776653348999
Q ss_pred EeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 532 GNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 532 gNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+.||| +.+.+.++.. +|||+|.+|
T Consensus 227 AsGGI-~~~ni~~~a~--~Gvd~Isvg 250 (265)
T TIGR00078 227 ASGGI-TLDNLEEYAE--TGVDVISSG 250 (265)
T ss_pred EECCC-CHHHHHHHHH--cCCCEEEeC
Confidence 99999 7999988765 799999994
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.30 E-value=3.1 Score=42.63 Aligned_cols=172 Identities=13% Similarity=0.208 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCc------cccccC--ChHHHHHHHHHhccc-cccCEEEEecCCC
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGA------GSCLLT--KPMRMKGIIEATSGT-VDKPITIKVRTGY 475 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~------GsaLl~--rp~~l~eIV~av~~~-v~iPVtVKiR~G~ 475 (693)
+.++-+++.+-++ .+|.|.||| |-|..--..+|- --+|++ ....+.++|+.++.. +.+|+.. +|+
T Consensus 30 ~v~~T~kilkglq-~gG~dIIEL--GvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiL---mgY 103 (268)
T KOG4175|consen 30 DVSTTAKILKGLQ-SGGSDIIEL--GVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIIL---MGY 103 (268)
T ss_pred cHHHHHHHHHHHh-cCCcCeEEe--cCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceee---eec
Confidence 4566777777777 689999998 556654433432 123444 345677777777665 5778766 444
Q ss_pred CCC---------------------------hhHHHHHHHHHHHcCCCEEEEeccc-ccC-------------------cc
Q 005508 476 FEG---------------------------KNRIDSLIADIGTWGASAVTVHGRT-RQQ-------------------RY 508 (693)
Q Consensus 476 ~d~---------------------------~~~~~~la~~L~eaG~daItVHgRt-r~q-------------------~y 508 (693)
... .+++..+-..+.+.|++.|-+..-+ ... +.
T Consensus 104 YNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvVSrmG~ 183 (268)
T KOG4175|consen 104 YNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVVSRMGV 183 (268)
T ss_pred ccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEEEeccc
Confidence 331 1233333333444455554443221 000 01
Q ss_pred CCC------ccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCCHH
Q 005508 509 SKL------ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSG 582 (693)
Q Consensus 509 tg~------Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s~~ 582 (693)
+|. .--+.+.++++... +.|+-..=||.++|.+... . .-+|||.||..+.. |.- +-.+.
T Consensus 184 TG~~~svn~~l~~L~qrvrk~t~-dtPlAVGFGvst~EHf~qV-g--svaDGVvvGSkiv~---l~g--------~ae~g 248 (268)
T KOG4175|consen 184 TGTRESVNEKLQSLLQRVRKATG-DTPLAVGFGVSTPEHFKQV-G--SVADGVVVGSKIVK---LLG--------EAESG 248 (268)
T ss_pred cccHHHHHHHHHHHHHHHHHhcC-CCceeEeeccCCHHHHHhh-h--hhccceEecHHHHH---Hhc--------cCCCc
Confidence 111 11246778888775 7899888899999999874 3 35999999987642 111 12245
Q ss_pred HHHHHHHHHHHHHHH
Q 005508 583 ERLNIMKDFARFGLE 597 (693)
Q Consensus 583 Erl~il~~~~~~~le 597 (693)
++..+.++|+.+.+.
T Consensus 249 ~~~~v~~Ey~~~~lk 263 (268)
T KOG4175|consen 249 EQGLVELEYFTKSLK 263 (268)
T ss_pred cchhHHHHHHHHHhh
Confidence 777777888887654
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.43 Score=54.34 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
...+-+..|.++|++.|.|.... +.+ ..-++.|+++++..+ ++|||+ |+|.|.+++..++. .|||+|-+|
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~---g~~-~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~--aGad~i~vg 293 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSH---GHS-IYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALID--AGADGLRVG 293 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCC---CcH-hHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHH--hCCCEEEEC
Confidence 45677788899999999985432 111 235788999999876 699988 99999999999876 699999755
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.69 Score=53.24 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=57.0
Q ss_pred HHHHHHcCCCEEEEe---c-ccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC---EEEEc
Q 005508 486 IADIGTWGASAVTVH---G-RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA---SCMIA 558 (693)
Q Consensus 486 a~~L~eaG~daItVH---g-Rtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD---gVMIG 558 (693)
+....+.|+|+|.+- . .+.. . ..+..|+.++++.+.. .+||++-||| +++.+.+++. .|++ +|.++
T Consensus 403 ~~~a~~~gadyi~~gpif~t~tk~-~-~~~~g~~~~~~~~~~~--~~Pv~aiGGI-~~~~~~~~~~--~G~~~~~gvav~ 475 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPTNTKA-N-NKTIGLDGLREVCEAS--KLPVVAIGGI-SASNAASVME--SGAPNLKGVAVV 475 (502)
T ss_pred HHHHhhcCCCEEEECCeecCCCCC-C-CCCCCHHHHHHHHHcC--CCCEEEECCC-CHHHHHHHHH--cCCCcCceEEEE
Confidence 345567899999852 2 2222 2 2456799999998876 6999999999 5899988776 5788 99999
Q ss_pred HHHhhCCCchh
Q 005508 559 RGALIKPWIFT 569 (693)
Q Consensus 559 RgaL~nPwiF~ 569 (693)
++++..+....
T Consensus 476 ~~i~~~~d~~~ 486 (502)
T PLN02898 476 SALFDQEDVLK 486 (502)
T ss_pred eHHhcCCCHHH
Confidence 99986544333
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.3 Score=48.55 Aligned_cols=97 Identities=7% Similarity=-0.014 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHc--CCCEEEEecccccCccCCCccHHHHHHHHHHcCC
Q 005508 449 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW--GASAVTVHGRTRQQRYSKLADWDYIYQCARKASD 526 (693)
Q Consensus 449 p~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ea--G~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~ 526 (693)
++...+.++.+......-+.| ..|.. ++..+.++.|.++ |+|+|+|.-- +.++. .-.+.|+.+++..|
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~---~~d~er~~~L~~a~~~~d~iviD~A---hGhs~-~~i~~ik~ir~~~p- 149 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSS---DNDLEKMTSILEAVPQLKFICLDVA---NGYSE-HFVEFVKLVREAFP- 149 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccC---HHHHHHHHHHHhcCCCCCEEEEECC---CCcHH-HHHHHHHHHHhhCC-
Confidence 444445555443333223334 44443 2335666677766 5999999532 22222 23578899999885
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 527 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
-+.|..|.|.+++++..++. .|||+|-||
T Consensus 150 -~~~viaGNV~T~e~a~~Li~--aGAD~ikVg 178 (343)
T TIGR01305 150 -EHTIMAGNVVTGEMVEELIL--SGADIVKVG 178 (343)
T ss_pred -CCeEEEecccCHHHHHHHHH--cCCCEEEEc
Confidence 46777899999999999876 699999877
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=92.08 E-value=3.7 Score=43.77 Aligned_cols=129 Identities=11% Similarity=0.036 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHH
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRID 483 (693)
Q Consensus 404 ~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~ 483 (693)
-+.+.+.+-++.+. ..|+|+|=++. ..|-...-..+.-.++++.+.+.++ +|.+-+-. .+..++.
T Consensus 17 iD~~~~~~li~~l~-~~Gv~Gl~~~G----------stGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg~---~~~~~ai 81 (279)
T cd00953 17 IDKEKFKKHCENLI-SKGIDYVFVAG----------TTGLGPSLSFQEKLELLKAYSDITD-KVIFQVGS---LNLEESI 81 (279)
T ss_pred cCHHHHHHHHHHHH-HcCCcEEEEcc----------cCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeCc---CCHHHHH
Confidence 47788989898887 57999998874 2233333344444555555555443 35543332 2457899
Q ss_pred HHHHHHHHcCCCEEEEecccccCccCCC----ccHHHHHHHHHHcCCCceEE------EeCCCCCHHHHHHHHhcCCCcC
Q 005508 484 SLIADIGTWGASAVTVHGRTRQQRYSKL----ADWDYIYQCARKASDDLQVL------GNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 484 ~la~~L~eaG~daItVHgRtr~q~ytg~----Adw~~I~~i~~~~~~~IPVI------gNGdI~s~eDa~~~l~~~~gaD 553 (693)
++++.++++|+|+|-+..= .|..+ .-.+|+..+.+ ++||+ ..|--.+++.+.++.+.+..+-
T Consensus 82 ~~a~~a~~~Gad~v~v~~P----~y~~~~~~~~i~~yf~~v~~----~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vv 153 (279)
T cd00953 82 ELARAAKSFGIYAIASLPP----YYFPGIPEEWLIKYFTDISS----PYPTFIYNYPKATGYDINARMAKEIKKAGGDII 153 (279)
T ss_pred HHHHHHHHcCCCEEEEeCC----cCCCCCCHHHHHHHHHHHHh----cCCEEEEeCccccCCCCCHHHHHHHHhcCCCEE
Confidence 9999999999999998642 23221 23466777776 26665 3465667888877654324444
Q ss_pred EE
Q 005508 554 SC 555 (693)
Q Consensus 554 gV 555 (693)
||
T Consensus 154 gi 155 (279)
T cd00953 154 GV 155 (279)
T ss_pred EE
Confidence 44
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.6 Score=47.10 Aligned_cols=92 Identities=12% Similarity=0.222 Sum_probs=58.6
Q ss_pred HHHHHHHhccccc--cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHH----cC
Q 005508 452 MKGIIEATSGTVD--KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARK----AS 525 (693)
Q Consensus 452 l~eIV~av~~~v~--iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~----~~ 525 (693)
+.+.|+.+++... .+|.|-++. ..++. .+.++|+|.|-+-. ...+.++++.+. .+
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~t--------leea~-eA~~~GaD~I~LDn----------~~~e~l~~av~~~~~~~~ 242 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETET--------LEQVQ-EALEYGADIIMLDN----------MPVDLMQQAVQLIRQQNP 242 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC--------HHHHH-HHHHcCCCEEEECC----------CCHHHHHHHHHHHHhcCC
Confidence 4455666666553 334442222 22333 34479999998862 222344444432 33
Q ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 526 DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 526 ~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
++||.+.|+| +.+.+.++.. +|+|+|.+|+....-||
T Consensus 243 -~i~leAsGGI-t~~ni~~ya~--tGvD~Isvgsl~~sa~~ 279 (288)
T PRK07428 243 -RVKIEASGNI-TLETIRAVAE--TGVDYISSSAPITRSPW 279 (288)
T ss_pred -CeEEEEECCC-CHHHHHHHHH--cCCCEEEEchhhhCCCc
Confidence 7999999999 7999988765 79999999987664554
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=5 Score=43.24 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=84.4
Q ss_pred CCeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 394 EDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 394 e~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
..|+.+.|=+. +.+...+|. ..||+.|-|- |.--.+.++-++..++++-.. ..+++|-..+-
T Consensus 68 ~vPV~lHLDHg~~~e~i~~ai-----~~Gf~SVM~D-----------~S~l~~eeNi~~t~~vv~~a~-~~gv~vE~ElG 130 (283)
T PRK08185 68 PVPFVIHLDHGATIEDVMRAI-----RCGFTSVMID-----------GSLLPYEENVALTKEVVELAH-KVGVSVEGELG 130 (283)
T ss_pred CCCEEEECCCCCCHHHHHHHH-----HcCCCEEEEe-----------CCCCCHHHHHHHHHHHHHHHH-HcCCeEEEEEe
Confidence 34566666433 444433332 2466666553 222223344555566665443 23666655542
Q ss_pred -CCCCC-C---------hhHHHHHHHHHHHcCCCEEEEecccccCccC----CCccHHHHHHHHHHcCCCceEEEeCCCC
Q 005508 473 -TGYFE-G---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYS----KLADWDYIYQCARKASDDLQVLGNGDIY 537 (693)
Q Consensus 473 -~G~~d-~---------~~~~~~la~~L~eaG~daItVHgRtr~q~yt----g~Adw~~I~~i~~~~~~~IPVIgNGdI~ 537 (693)
+|..+ . -.+..+..+.++..|+|+|.+.-+|..+.|. ...+|+.++++++.+ ++|++.-|++.
T Consensus 131 ~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg 208 (283)
T PRK08185 131 TIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSA 208 (283)
T ss_pred eccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCC
Confidence 22111 0 0133344555566799999994444444453 235899999999988 79999999996
Q ss_pred CH-HHHHHHHhcCCCcCEEEEcHHHh
Q 005508 538 SY-LDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 538 s~-eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
.+ +++.+++. .|+.=|=|++.+.
T Consensus 209 ~~~e~~~~ai~--~GI~KiNi~T~l~ 232 (283)
T PRK08185 209 NPDAEIAESVQ--LGVGKINISSDMK 232 (283)
T ss_pred CCHHHHHHHHH--CCCeEEEeChHHH
Confidence 65 44555655 4777777776654
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.88 Score=51.99 Aligned_cols=162 Identities=12% Similarity=0.119 Sum_probs=106.0
Q ss_pred chhccCChhhhhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHH
Q 005508 375 TNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKG 454 (693)
Q Consensus 375 ~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~e 454 (693)
..+..|....+..++.+- .-|+..-=|=-++.+..+|. .+|+|+|=|-. ++|. ++.+.+
T Consensus 92 ~~~F~Gs~~~l~~vr~~v-~~PvLrKDFiid~~QI~ea~-----~~GADavLLI~--------------~~L~-~~~l~~ 150 (454)
T PRK09427 92 EKYFQGSFDFLPIVRAIV-TQPILCKDFIIDPYQIYLAR-----YYGADAILLML--------------SVLD-DEQYRQ 150 (454)
T ss_pred cCcCCCCHHHHHHHHHhC-CCCEEeccccCCHHHHHHHH-----HcCCCchhHHH--------------HhCC-HHHHHH
Confidence 345566666555554432 23433211122555555543 35889888753 2232 456677
Q ss_pred HHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeC
Q 005508 455 IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 534 (693)
Q Consensus 455 IV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG 534 (693)
+++...+ +++-..|=++. .. + +.+..++|+..|-|..|.-. +-..|.+...++....|.++.+|+-+
T Consensus 151 l~~~a~~-lGl~~lvEvh~-----~~---E-l~~al~~~a~iiGiNnRdL~---t~~vd~~~~~~l~~~ip~~~~~vseS 217 (454)
T PRK09427 151 LAAVAHS-LNMGVLTEVSN-----EE---E-LERAIALGAKVIGINNRNLR---DLSIDLNRTRELAPLIPADVIVISES 217 (454)
T ss_pred HHHHHHH-cCCcEEEEECC-----HH---H-HHHHHhCCCCEEEEeCCCCc---cceECHHHHHHHHhhCCCCcEEEEeC
Confidence 7765533 45555554453 12 2 23345679999999988644 33467788888888887778999999
Q ss_pred CCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 535 DIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 535 dI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
||.+++|+..+ .. ++|+|.||..+|..|+.-..+++
T Consensus 218 GI~t~~d~~~~-~~--~~davLiG~~lm~~~d~~~~~~~ 253 (454)
T PRK09427 218 GIYTHAQVREL-SP--FANGFLIGSSLMAEDDLELAVRK 253 (454)
T ss_pred CCCCHHHHHHH-Hh--cCCEEEECHHHcCCCCHHHHHHH
Confidence 99999999885 43 59999999999999987666554
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=30 Score=40.30 Aligned_cols=134 Identities=12% Similarity=0.096 Sum_probs=79.9
Q ss_pred CHHHHHHH-HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccC-EEEEecCCCCCChhHH
Q 005508 405 YPDTLART-VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKP-ITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~A-A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iP-VtVKiR~G~~d~~~~~ 482 (693)
.|+.+.+. .+.+. .+|+|.|-| .+| +++.+.+...++++++.-..- ..+-+..+...+.+..
T Consensus 94 y~ddvv~~fv~~a~-~~Gidi~RI--fd~-------------lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~ 157 (499)
T PRK12330 94 YEDEVVDRFVEKSA-ENGMDVFRV--FDA-------------LNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGF 157 (499)
T ss_pred cchhHHHHHHHHHH-HcCCCEEEE--Eec-------------CChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHH
Confidence 35444333 33333 569999777 333 355577788888887654322 2333344555667789
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCC---HHHHHHHHhcCCCcCEEEEc
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS---YLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s---~eDa~~~l~~~~gaDgVMIG 558 (693)
.++++.+.++||+.|.|-.-. +..+...-.++|..+++.++.++||-.-.--.. ...+..+++ .|||.|=.+
T Consensus 158 ~~~a~~l~~~Gad~I~IkDta--Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAie--AGad~vDta 232 (499)
T PRK12330 158 VEQAKRLLDMGADSICIKDMA--ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIE--AGVDVVDTA 232 (499)
T ss_pred HHHHHHHHHcCCCEEEeCCCc--cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHH--cCCCEEEee
Confidence 999999999999999885432 112222346788888888742488754332111 222344455 588877433
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.52 Score=50.51 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=53.0
Q ss_pred HHHHHHcCCCEEEEecc----cccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHH
Q 005508 486 IADIGTWGASAVTVHGR----TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 486 a~~L~eaG~daItVHgR----tr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 561 (693)
+..+.+.|+|+|.+..- |... ..+..++.++++++.. ++||++-||| +.+++.+++. .|++||.+-+++
T Consensus 239 ~~~a~~~~~dyi~~gpvf~t~tk~~--~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~--~g~~gva~i~~~ 311 (312)
T PRK08999 239 LARAQRLGVDFAVLSPVQPTASHPG--AAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEARE--HGAQGIAGIRGL 311 (312)
T ss_pred HHHHHhcCCCEEEECCCcCCCCCCC--CCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHH--hCCCEEEEEEEe
Confidence 34556789999988542 3222 2345788999998887 7999999999 9999998776 699999887654
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.4 Score=48.91 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=36.4
Q ss_pred CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 510 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 510 g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
...+|+.|+.+++.. ++|||. .+|.+++|+..+++ .|||+|.+.
T Consensus 208 ~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~--~GvD~I~vs 251 (364)
T PLN02535 208 ASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVE--VGVAGIIVS 251 (364)
T ss_pred CCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHh--cCCCEEEEe
Confidence 446899999999987 699876 56789999998776 699999774
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=2.8 Score=46.49 Aligned_cols=106 Identities=16% Similarity=0.070 Sum_probs=72.9
Q ss_pred cccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEE-ecccc--cCccC-CCccHHHH
Q 005508 442 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV-HGRTR--QQRYS-KLADWDYI 517 (693)
Q Consensus 442 GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItV-HgRtr--~q~yt-g~Adw~~I 517 (693)
||..+++..++.++- .+++||.+|.-+. .+.++....+..+...|..-|.+ |-++| ...|. ...||..|
T Consensus 191 ga~~~~n~~LL~~va-----~t~kPVllk~G~~--~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai 263 (352)
T PRK13396 191 GARNMQNFSLLKKVG-----AQDKPVLLKRGMA--ATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVI 263 (352)
T ss_pred CcccccCHHHHHHHH-----ccCCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHH
Confidence 677888877755443 2589999988775 34677888888999999865555 54332 32454 45799999
Q ss_pred HHHHHHcCCCceEEEeC----CCC--CHHHHHHHHhcCCCcCEEEEc
Q 005508 518 YQCARKASDDLQVLGNG----DIY--SYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 518 ~~i~~~~~~~IPVIgNG----dI~--s~eDa~~~l~~~~gaDgVMIG 558 (693)
..+++.. ++|||.+- |.. .+.-+..++. .||||+||=
T Consensus 264 ~~lk~~~--~lPVi~DpsH~~G~sd~~~~~a~AAva--~GAdGliIE 306 (352)
T PRK13396 264 PVLRSLT--HLPIMIDPSHGTGKSEYVPSMAMAAIA--AGTDSLMIE 306 (352)
T ss_pred HHHHHhh--CCCEEECCcccCCcHHHHHHHHHHHHh--hCCCeEEEE
Confidence 9999887 69998762 111 2333444454 599999986
|
|
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.4 Score=46.86 Aligned_cols=62 Identities=6% Similarity=0.040 Sum_probs=48.0
Q ss_pred HHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 486 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+..+.++|+|+|-+-. ...+.++++.+....++||++.||| +.+.+.++.. +|+|+|.+|.-
T Consensus 195 a~~A~~~gaDyI~ld~----------~~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~--~Gvd~Iav~sl 256 (268)
T cd01572 195 LKEALEAGADIIMLDN----------MSPEELREAVALLKGRVLLEASGGI-TLENIRAYAE--TGVDYISVGAL 256 (268)
T ss_pred HHHHHHcCCCEEEECC----------cCHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHH--cCCCEEEEEee
Confidence 4445679999998843 3357788877766335999999999 7899988765 79999999963
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=91.73 E-value=6.2 Score=41.90 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=47.8
Q ss_pred EEEecCCC-HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCC
Q 005508 398 GVQICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF 476 (693)
Q Consensus 398 gvQL~G~~-pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~ 476 (693)
.|+|||-. ++++..|+ ++|+|+|-+.+-.+.+.. -.++.+.+|++.+....-.+|.|-..
T Consensus 48 ~VKICGit~~eda~~a~-----~~GaD~iGfIf~~~SpR~----------Vs~e~a~~I~~~l~~~~~~~VgVfv~---- 108 (256)
T PLN02363 48 LVKMCGITSARDAAMAV-----EAGADFIGMILWPKSKRS----------ISLSVAKEISQVAREGGAKPVGVFVD---- 108 (256)
T ss_pred eEEECCCCcHHHHHHHH-----HcCCCEEEEecCCCCCCc----------CCHHHHHHHHHhccccCccEEEEEeC----
Confidence 58999964 55544433 468999988753322211 24667777777664321112333222
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecc
Q 005508 477 EGKNRIDSLIADIGTWGASAVTVHGR 502 (693)
Q Consensus 477 d~~~~~~~la~~L~eaG~daItVHgR 502 (693)
....+++..+++.|++.|.+||-
T Consensus 109 ---~~~~~I~~~~~~~~ld~VQLHG~ 131 (256)
T PLN02363 109 ---DDANTILRAADSSDLELVQLHGN 131 (256)
T ss_pred ---CCHHHHHHHHHhcCCCEEEECCC
Confidence 12345666677788888888873
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.69 Score=52.06 Aligned_cols=71 Identities=8% Similarity=-0.031 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+++.+.++.|.++|+|.|+|..-.. + +..-++.|+++++.+| +++ +..|+|.|++++..++. .|||+|.+|
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g---~-~~~~~~~v~~ik~~~p-~~~-vi~g~V~T~e~a~~l~~--aGaD~I~vG 222 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHG---H-STRIIELVKKIKTKYP-NLD-LIAGNIVTKEAALDLIS--VGADCLKVG 222 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC---C-ChhHHHHHHHHHhhCC-CCc-EEEEecCCHHHHHHHHH--cCCCEEEEC
Confidence 3467899999999999999864432 1 2234678999999886 566 45699999999999776 699999887
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=91.68 E-value=4.8 Score=43.24 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=96.2
Q ss_pred CCCeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe
Q 005508 393 SEDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 393 ~e~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi 471 (693)
...|+.++|=+. +.+...+|. .+||+-|.+- |..-.+.++.+...++++-.+.. ++.|-.=+
T Consensus 68 ~~VPV~lHLDH~~~~~~i~~ai-----~~GftSVMiD-----------~S~l~~eeNi~~t~~vv~~ah~~-gv~VEaEl 130 (276)
T cd00947 68 ASVPVALHLDHGSSFELIKRAI-----RAGFSSVMID-----------GSHLPFEENVAKTKEVVELAHAY-GVSVEAEL 130 (276)
T ss_pred CCCCEEEECCCCCCHHHHHHHH-----HhCCCEEEeC-----------CCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 356888888654 555555443 3588888874 33333456667777777766543 44444433
Q ss_pred c-C-CCCCC-------hhHHHHHHHHHHHcCCCEEEEecccccCccCC---CccHHHHHHHHHHcCCCceEEEeCCCCCH
Q 005508 472 R-T-GYFEG-------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSK---LADWDYIYQCARKASDDLQVLGNGDIYSY 539 (693)
Q Consensus 472 R-~-G~~d~-------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg---~Adw~~I~~i~~~~~~~IPVIgNGdI~s~ 539 (693)
- + |..+. -.+..+....+++.|+|+|.+.-.|..+.|.+ ..||+.+++|.+.+ ++|++.-|+=-.+
T Consensus 131 G~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~ 208 (276)
T cd00947 131 GRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIP 208 (276)
T ss_pred eeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCC
Confidence 2 1 11111 11234445556678999999877777777754 35899999999999 6999998887766
Q ss_pred HH-HHHHHhcCCCcCEEEEcHHHh
Q 005508 540 LD-WNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 540 eD-a~~~l~~~~gaDgVMIGRgaL 562 (693)
++ +.+++. .|+.=|=|++.+.
T Consensus 209 ~e~~~~ai~--~Gi~KiNi~T~l~ 230 (276)
T cd00947 209 DEQIRKAIK--LGVCKININTDLR 230 (276)
T ss_pred HHHHHHHHH--cCCeEEEeChHHH
Confidence 44 666665 5787777777654
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=22 Score=38.30 Aligned_cols=149 Identities=11% Similarity=-0.013 Sum_probs=91.0
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe
Q 005508 392 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 392 ~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi 471 (693)
....|+++++.+ +..+..+.++.+. .+|+|+|-+- -|.-. .-..+-+.+-.+++.+++++||.+--
T Consensus 74 ~~~~pvi~gv~~-~t~~~i~~~~~a~-~~Gadav~~~--pP~y~----------~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 74 AGRVPVIAGAGG-GTAQAIEYAQAAE-RAGADGILLL--PPYLT----------EAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred CCCCcEEEecCC-CHHHHHHHHHHHH-HhCCCEEEEC--CCCCC----------CCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 345688899975 7888888888887 6899999883 23211 11356677888888888899999987
Q ss_pred cCCCCCChhHHHHHHHHHH-Hc-CCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHH-HHHHHhc
Q 005508 472 RTGYFEGKNRIDSLIADIG-TW-GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD-WNKHKSD 548 (693)
Q Consensus 472 R~G~~d~~~~~~~la~~L~-ea-G~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eD-a~~~l~~ 548 (693)
++|..-. .+++.+|. +. .+.+|-- + ..|+..+.++.+.++.++.| .+|.= +.+. +...+.
T Consensus 140 ~~g~~l~----~~~l~~L~~~~pni~giK~---------s-~~d~~~~~~~~~~~~~~f~v-l~G~d-~~e~~~~~~~~- 202 (303)
T PRK03620 140 RDNAVLT----ADTLARLAERCPNLVGFKD---------G-VGDIELMQRIVRALGDRLLY-LGGLP-TAEVFAAAYLA- 202 (303)
T ss_pred CCCCCCC----HHHHHHHHhhCCCEEEEEe---------C-CCCHHHHHHHHHHcCCCeEE-EeCCC-cchhhHHHHHh-
Confidence 7765322 33444443 32 2223221 1 24677888887766534544 45531 1122 223333
Q ss_pred CCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 549 CPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 549 ~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
.|++|.+.|-+-+ -|.++.++-+
T Consensus 203 -~G~~G~is~~an~-~P~~~~~l~~ 225 (303)
T PRK03620 203 -LGVPTYSSAVFNF-VPEIALAFYR 225 (303)
T ss_pred -CCCCEEEecHHhh-hHHHHHHHHH
Confidence 5899998775543 4666666654
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=91.62 E-value=2 Score=45.68 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=44.8
Q ss_pred HHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCC--CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 489 IGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASD--DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 489 L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~--~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
..++|+|.|-+-.- .-+.++++.+.+.. ++||.+.||| +++.+.++.. +|||+|.+|.-....|+
T Consensus 197 A~~~gaD~I~ld~~----------~~e~l~~~v~~i~~~~~i~i~asGGI-t~~ni~~~a~--~Gad~Isvgal~~s~~~ 263 (269)
T cd01568 197 ALEAGADIIMLDNM----------SPEELKEAVKLLKGLPRVLLEASGGI-TLENIRAYAE--TGVDVISTGALTHSAPA 263 (269)
T ss_pred HHHcCCCEEEECCC----------CHHHHHHHHHHhccCCCeEEEEECCC-CHHHHHHHHH--cCCCEEEEcHHHcCCCc
Confidence 34689999988432 22444544443321 6899999999 7888888765 79999999754444444
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.1 Score=47.74 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=72.1
Q ss_pred CCCeEEEEecCCCHH-HHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCC---hHHHHHHHHHhccc-c-ccC
Q 005508 393 SEDLFGVQICGAYPD-TLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTK---PMRMKGIIEATSGT-V-DKP 466 (693)
Q Consensus 393 ~e~p~gvQL~G~~pe-~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~r---p~~l~eIV~av~~~-v-~iP 466 (693)
.+.|++.=+++.||- .+..-.+.+. +.||.+|. |+ |.--.....+...|... .++=.++|+..++. + .+|
T Consensus 80 ~~tPViaGv~atDP~~~~~~fl~~lk-~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~ 155 (268)
T PF09370_consen 80 KDTPVIAGVCATDPFRDMDRFLDELK-ELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTA 155 (268)
T ss_dssp SSS-EEEEE-TT-TT--HHHHHHHHH-HHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--
T ss_pred cCCCEEEEecCcCCCCcHHHHHHHHH-HhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeee
Confidence 357999999999983 3444455565 56999985 66 53221111111222111 12223444444332 1 344
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCC---cc----HHHHHHHHHH----cCCCceEEEeCC
Q 005508 467 ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL---AD----WDYIYQCARK----ASDDLQVLGNGD 535 (693)
Q Consensus 467 VtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~---Ad----w~~I~~i~~~----~~~~IPVIgNGd 535 (693)
+.. +. +=|+.+.++|+|.|.+|-........+. .. .+.+.++.++ .++-|-++--|-
T Consensus 156 yvf--------~~----e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGP 223 (268)
T PF09370_consen 156 YVF--------NE----EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGP 223 (268)
T ss_dssp EE---------SH----HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTT
T ss_pred eec--------CH----HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 433 22 3355566899999999976433332221 11 2233444332 233366677788
Q ss_pred CCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 536 IYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 536 I~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
|.+++|++.++....+++|..-|.
T Consensus 224 I~~p~D~~~~l~~t~~~~Gf~G~S 247 (268)
T PF09370_consen 224 IATPEDAQYVLRNTKGIHGFIGAS 247 (268)
T ss_dssp B-SHHHHHHHHHH-TTEEEEEEST
T ss_pred CCCHHHHHHHHhcCCCCCEEeccc
Confidence 999999999999845599987664
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.2 Score=48.89 Aligned_cols=102 Identities=8% Similarity=0.049 Sum_probs=66.3
Q ss_pred ccccC-ChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCC--CEEEEecccccCccCCCccHHHHHH
Q 005508 443 SCLLT-KPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGA--SAVTVHGRTRQQRYSKLADWDYIYQ 519 (693)
Q Consensus 443 saLl~-rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~--daItVHgRtr~q~ytg~Adw~~I~~ 519 (693)
+.+.+ +++.....++.++. ..+.|-+..|.. .+..+-+..|.++|+ |+|.|..-. .+ ...-.+.|++
T Consensus 64 ~~~~k~~~e~~~~~~r~~~~---~~l~v~~~vg~~---~~~~~~~~~Lv~ag~~~d~i~iD~a~---gh-~~~~~e~I~~ 133 (326)
T PRK05458 64 YIMHRFDPEARIPFIKDMHE---QGLIASISVGVK---DDEYDFVDQLAAEGLTPEYITIDIAH---GH-SDSVINMIQH 133 (326)
T ss_pred EEEecCCHHHHHHHHHhccc---cccEEEEEecCC---HHHHHHHHHHHhcCCCCCEEEEECCC---Cc-hHHHHHHHHH
Confidence 34555 67666666655532 234555555543 234566777788855 999993322 11 1123567999
Q ss_pred HHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 520 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 520 i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+++..| ++|| ..|+|.|.+++..+++ .|||+|.+|
T Consensus 134 ir~~~p-~~~v-i~g~V~t~e~a~~l~~--aGad~i~vg 168 (326)
T PRK05458 134 IKKHLP-ETFV-IAGNVGTPEAVRELEN--AGADATKVG 168 (326)
T ss_pred HHhhCC-CCeE-EEEecCCHHHHHHHHH--cCcCEEEEC
Confidence 999885 4554 5588999999988765 699999977
|
|
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=91.55 E-value=3.4 Score=47.13 Aligned_cols=123 Identities=10% Similarity=0.052 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRID 483 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~ 483 (693)
+++.+++-|+....+.||..|-|-.|-+ +++.-.+.|++|++++ ++.|.|-.-.+|+ ..++.
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDAN~~wt--~~~Ai 242 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL---------------RGEEEIEAVTALAKRFPQARITLDPNGAWS--LDEAI 242 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCC--HHHHH
Confidence 5777766665443235999998865421 2344567788888776 4556555555663 46799
Q ss_pred HHHHHHHHcCCCEEEEecccccCccCCCcc----HHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 484 SLIADIGTWGASAVTVHGRTRQQRYSKLAD----WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 484 ~la~~L~eaG~daItVHgRtr~q~ytg~Ad----w~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
.+++.|++. +.+| +|-. .+-| ++-.+++++.. ++||.+.=.++++.++..++.. ..+|.++
T Consensus 243 ~~~~~Le~~-~~~i-------EePv-~~~d~~~~~~~la~Lr~~~--~iPIa~dEs~~~~~~~~~li~~-~avdi~~ 307 (441)
T TIGR03247 243 ALCKDLKGV-LAYA-------EDPC-GAEQGYSGREVMAEFRRAT--GLPTATNMIATDWRQMGHALQL-QAVDIPL 307 (441)
T ss_pred HHHHHhhhh-hceE-------eCCC-CcccccchHHHHHHHHHhC--CCCEEcCCccCCHHHHHHHHHh-CCCCEEe
Confidence 999999886 5543 4433 2234 77889999888 6999988888999999998886 6788765
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=2.1 Score=45.95 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=47.0
Q ss_pred HHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHH
Q 005508 486 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRga 561 (693)
+..+.++|+|.|-+- ....+.++++.+..+.++||++.||| +.+.+.++.. +|+|+|.+|.--
T Consensus 202 a~eA~~~gaD~I~LD----------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~--tGvD~Isvg~lt 264 (277)
T PRK05742 202 LRQALAAGADIVMLD----------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAE--TGVDYISIGAMT 264 (277)
T ss_pred HHHHHHcCCCEEEEC----------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHH--cCCCEEEEChhh
Confidence 444558899999773 23455667666655336999999999 7999988765 799999999633
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=91.52 E-value=2.4 Score=45.10 Aligned_cols=131 Identities=21% Similarity=0.200 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
+.+.+.+-++.+. ..|+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++
T Consensus 20 d~~~~~~~i~~l~-~~Gv~gl~~~G----------stGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~---~st~~~ 85 (289)
T PF00701_consen 20 DEDALKRLIDFLI-EAGVDGLVVLG----------STGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA---NSTEEA 85 (289)
T ss_dssp -HHHHHHHHHHHH-HTTSSEEEESS----------TTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES---SSHHHH
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHccCceEEEecCcc---hhHHHH
Confidence 5678888888877 56999998863 122222223333345555555544 5788886554 256789
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCCc---cHHHHHHHHHHcCCCceEE-Ee-----CCCCCHHHHHHHHhcCCCcC
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKLA---DWDYIYQCARKASDDLQVL-GN-----GDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~A---dw~~I~~i~~~~~~~IPVI-gN-----GdI~s~eDa~~~l~~~~gaD 553 (693)
+++++.+++.|+|++-|..- .|..+. -.+|+..|++.+ ++||| .| |--.+++.+.++.. ...+-
T Consensus 86 i~~a~~a~~~Gad~v~v~~P----~~~~~s~~~l~~y~~~ia~~~--~~pi~iYn~P~~tg~~ls~~~l~~L~~-~~nv~ 158 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIPP----YYFKPSQEELIDYFRAIADAT--DLPIIIYNNPARTGNDLSPETLARLAK-IPNVV 158 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEES----TSSSCCHHHHHHHHHHHHHHS--SSEEEEEEBHHHHSSTSHHHHHHHHHT-STTEE
T ss_pred HHHHHHHhhcCceEEEEecc----ccccchhhHHHHHHHHHHhhc--CCCEEEEECCCccccCCCHHHHHHHhc-CCcEE
Confidence 99999999999999988642 222222 357888888776 57766 23 55667777777554 35554
Q ss_pred EEE
Q 005508 554 SCM 556 (693)
Q Consensus 554 gVM 556 (693)
|+=
T Consensus 159 giK 161 (289)
T PF00701_consen 159 GIK 161 (289)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=6 Score=43.12 Aligned_cols=133 Identities=7% Similarity=0.018 Sum_probs=81.7
Q ss_pred CeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec-
Q 005508 395 DLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR- 472 (693)
Q Consensus 395 ~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR- 472 (693)
.|+.+.|=+. +.+...+|. .+||+-|-+- |.--.+.++-+...++++-... .++.|-.=+-
T Consensus 75 VPValHLDHg~~~e~i~~ai-----~~GftSVM~D-----------gS~l~~eeNi~~T~~vve~Ah~-~gv~VEaElG~ 137 (307)
T PRK05835 75 IPVALHLDHGTTFESCEKAV-----KAGFTSVMID-----------ASHHAFEENLELTSKVVKMAHN-AGVSVEAELGR 137 (307)
T ss_pred CeEEEECCCCCCHHHHHHHH-----HcCCCEEEEe-----------CCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecc
Confidence 4677766443 444433322 3577776663 3222344566667777765543 3454444332
Q ss_pred C-CCCCC---------hhHHHHHHHHHHHcCCCEEEEecccccCccC--C--CccHHHHHHHHHHcCCCceEEEeCCCCC
Q 005508 473 T-GYFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYS--K--LADWDYIYQCARKASDDLQVLGNGDIYS 538 (693)
Q Consensus 473 ~-G~~d~---------~~~~~~la~~L~eaG~daItVHgRtr~q~yt--g--~Adw~~I~~i~~~~~~~IPVIgNGdI~s 538 (693)
+ |..+. -.+..+....+++.|+|+|.|.-.|..+.|. + ..||+.+++|++.+ ++|++.-|+=-.
T Consensus 138 vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGi 215 (307)
T PRK05835 138 LMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAI 215 (307)
T ss_pred cCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCC
Confidence 1 11111 1123455555678899999998888777886 4 35899999999998 799999998888
Q ss_pred HHHHHHHH
Q 005508 539 YLDWNKHK 546 (693)
Q Consensus 539 ~eDa~~~l 546 (693)
++++.+.+
T Consensus 216 p~e~~~~~ 223 (307)
T PRK05835 216 PDDVRKSY 223 (307)
T ss_pred chHHhhhh
Confidence 88644333
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=91.45 E-value=7.3 Score=42.14 Aligned_cols=204 Identities=15% Similarity=0.121 Sum_probs=118.3
Q ss_pred cCcEEEccCCCCCcHHHHHHHHHcCCCEEEecccccc-hhccCChh----hhh-hh---h--ccCCCCeEEEEec---CC
Q 005508 339 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCT-NLLQGQAS----EWA-LL---R--RHSSEDLFGVQIC---GA 404 (693)
Q Consensus 339 knriiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~-~ll~g~~~----e~~-ll---~--~h~~e~p~gvQL~---G~ 404 (693)
.+.++++| ++-|.-=-+++.+.|++.++|--.... .+ |.+. .+. ++ + .....-|+++-+= |+
T Consensus 13 ~~~~~~~p--g~~D~lSAri~e~aGf~ai~~ss~~va~sl--G~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~ 88 (290)
T TIGR02321 13 SGRLFTAM--AAHNPLVAKLAEQAGFGGIWGSGFELSASY--AVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGN 88 (290)
T ss_pred CCCCEEec--cccCHHHHHHHHHcCCCEEEECHHHHHHHC--CCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCC
Confidence 34567777 444654456777889887776543222 22 3221 111 11 1 1223568887773 55
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCC-CCcccccC-CccccccCChHHHHHHHHHhccc-cccCEEEEecCCCC---CC
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGC-PIDIVVNK-GAGSCLLTKPMRMKGIIEATSGT-VDKPITIKVRTGYF---EG 478 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GC-P~~~v~k~-G~GsaLl~rp~~l~eIV~av~~~-v~iPVtVKiR~G~~---d~ 478 (693)
.+ .+.+.++.+. .+|+.+|.|-=+. |-. +.. ..|..-+-.++...+-|++++++ .+.++.|=-|+... ..
T Consensus 89 ~~-~v~~tV~~~~-~aGvagi~IEDq~~pk~--cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g 164 (290)
T TIGR02321 89 AV-NVHYVVPQYE-AAGASAIVMEDKTFPKD--TSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLG 164 (290)
T ss_pred cH-HHHHHHHHHH-HcCCeEEEEeCCCCCcc--cccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCC
Confidence 55 5788888887 6899999995432 211 100 01212233455555555555544 35567776676322 23
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeC---CCCCHHHHHHHHhcCCCcCEE
Q 005508 479 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG---DIYSYLDWNKHKSDCPELASC 555 (693)
Q Consensus 479 ~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG---dI~s~eDa~~~l~~~~gaDgV 555 (693)
.+++++=++...++|+|.|-+++.. .+-+.|.++.+.++.++||+.+. ...+.+++.++ +++..|
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifv~~~~--------~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~l----g~~~~v 232 (290)
T TIGR02321 165 QQEAVRRGQAYEEAGADAILIHSRQ--------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAAL----SKVGIV 232 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCC--------CCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHh----cCCcEE
Confidence 4677777888899999999998631 34567888888775447886543 44555565441 236668
Q ss_pred EEcHHHh
Q 005508 556 MIARGAL 562 (693)
Q Consensus 556 MIGRgaL 562 (693)
..|-.++
T Consensus 233 ~~g~~~~ 239 (290)
T TIGR02321 233 IYGNHAI 239 (290)
T ss_pred EEChHHH
Confidence 8884443
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.055 Score=55.80 Aligned_cols=37 Identities=22% Similarity=0.553 Sum_probs=28.6
Q ss_pred ccccCChhhhccCCCCCCCCCCCCCCCCChhhhhhcCCCCC
Q 005508 99 SASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDL 139 (693)
Q Consensus 99 ~~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~~yl~~K~~di 139 (693)
-+.-.|.-|..+ .|.-|+.|+|+|++++-...-.+||
T Consensus 83 pK~~vcalF~~~----~c~kg~~ckF~h~~ee~r~~eK~DL 119 (299)
T COG5252 83 PKTVVCALFLNK----TCAKGDACKFAHGKEEARKTEKPDL 119 (299)
T ss_pred chhHHHHHhccC----ccccCchhhhhcchHHHhhhcccch
Confidence 456789999887 6999999999999887666444443
|
|
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=4.4 Score=44.02 Aligned_cols=123 Identities=7% Similarity=0.012 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHHH
Q 005508 406 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRID 483 (693)
Q Consensus 406 pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~~ 483 (693)
++.+.+.++.+. ..||..|-|-.|- ..++.-.+.|++|++++ ++.+.|-.--+|+ ..++.
T Consensus 119 ~~~~~~~a~~~~-~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~--~~~A~ 180 (320)
T PRK02714 119 GEAALQQWQTLW-QQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANGGLS--LEEAK 180 (320)
T ss_pred CHHHHHHHHHHH-HcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCCCCC--HHHHH
Confidence 455666666554 3599888884431 23455567788888876 4566665555663 46788
Q ss_pred HHHHHHHH---cCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 484 SLIADIGT---WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 484 ~la~~L~e---aG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
++++.|++ .++.+| +|-. ...+++-.+.+++.. ++||.+.=.+.++.|+..++.. ..+|.|.+
T Consensus 181 ~~~~~l~~l~~~~i~~i-------EqP~-~~~~~~~~~~l~~~~--~~Pia~DEs~~~~~d~~~~~~~-~a~d~v~i 246 (320)
T PRK02714 181 RWLQLCDRRLSGKIEFI-------EQPL-PPDQFDEMLQLSQDY--QTPIALDESVANLAQLQQCYQQ-GWRGIFVI 246 (320)
T ss_pred HHHHHHhhccCCCccEE-------ECCC-CcccHHHHHHHHHhC--CCCEEECCccCCHHHHHHHHHc-CCCCEEEE
Confidence 99999987 566665 3433 234788888898887 6999999999999999998875 56777653
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.54 Score=53.99 Aligned_cols=71 Identities=6% Similarity=0.004 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
.+..+++..|.++|++.|.|..-. .++ ..-.+.|+.|++..+ ++|||+ |.+.|.+.+..++. .|||+|-||
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~---g~~-~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~--~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH---GHQ-VKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLE--AGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC---CCc-HHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHH--hCCCEEEEC
Confidence 356788999999999999984322 111 234578999999876 799999 88999999999776 699998755
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.6 Score=48.51 Aligned_cols=151 Identities=15% Similarity=0.092 Sum_probs=87.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEE-----------eCCCCCHHHHHHHH
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLG-----------NGDIYSYLDWNKHK 546 (693)
Q Consensus 478 ~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIg-----------NGdI~s~eDa~~~l 546 (693)
+.+++.+.|+.+.+.|+..|.+.+........-..-.++++.+++..+ .+.+.+ +.|+.+.+.+.+ |
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~-~i~i~a~s~~ei~~~~~~~G~~~~e~l~~-L 169 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFP-DIHLHAFSPMEVYFAAREDGLSYEEVLKA-L 169 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCC-CcceeeCCHHHHHHHHhhcCCCHHHHHHH-H
Confidence 346788999999999999999986532211100011245666666554 566766 567777666666 4
Q ss_pred hcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhCC-
Q 005508 547 SDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIP- 625 (693)
Q Consensus 547 ~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls~~~ryip- 625 (693)
.+ .|+|.+--+-.-+-++.++..+. +-..|..+|++.++...+.+++.--.--.|+..+.....+.+-++.+.-+
T Consensus 170 ke-AGld~~~~t~~e~l~~~vr~~i~---p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~ 245 (371)
T PRK07360 170 KD-AGLDSMPGTAAEILVDEVRRIIC---PEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQQE 245 (371)
T ss_pred HH-cCCCcCCCcchhhccHHHHHhhC---CCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhchh
Confidence 44 79999852111222444443332 11347789999999998888764322234555555555555555444321
Q ss_pred -Ccccccccc
Q 005508 626 -VGLLDVIPQ 634 (693)
Q Consensus 626 -~glle~~p~ 634 (693)
.|+...+|.
T Consensus 246 ~~g~~~fIp~ 255 (371)
T PRK07360 246 TGGITEFVPL 255 (371)
T ss_pred hCCeeEEEec
Confidence 334444453
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.24 E-value=1.9 Score=47.53 Aligned_cols=138 Identities=9% Similarity=0.088 Sum_probs=78.5
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCcccc----c-cCChHHHHHHHHHhccccccCEEEEe--c-CCC--CC-----
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSC----L-LTKPMRMKGIIEATSGTVDKPITIKV--R-TGY--FE----- 477 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~Gsa----L-l~rp~~l~eIV~av~~~v~iPVtVKi--R-~G~--~d----- 477 (693)
++.+. +.|.|+|-+++ -+|+. + ......+.+|.+..++ .++|+.+=+ . .|- .+
T Consensus 112 ve~a~-~~GAdAVk~lv----------~~~~d~~~~~~~~~~~~l~rv~~ec~~-~giPlllE~l~y~~~~~~~~~~~~a 179 (340)
T PRK12858 112 VRRIK-EAGADAVKLLL----------YYRPDEDDAINDRKHAFVERVGAECRA-NDIPFFLEPLTYDGKGSDKKAEEFA 179 (340)
T ss_pred HHHHH-HcCCCEEEEEE----------EeCCCcchHHHHHHHHHHHHHHHHHHH-cCCceEEEEeccCCCcccccccccc
Confidence 34444 56899888764 11111 0 0122234455544432 389987742 1 111 11
Q ss_pred --ChhHHHHHHHHHHH--cCCCEEEEecc----cc------cCccCCCccHHHHHHHHHHcCCCceEEE-eCCCCCHHHH
Q 005508 478 --GKNRIDSLIADIGT--WGASAVTVHGR----TR------QQRYSKLADWDYIYQCARKASDDLQVLG-NGDIYSYLDW 542 (693)
Q Consensus 478 --~~~~~~~la~~L~e--aG~daItVHgR----tr------~q~ytg~Adw~~I~~i~~~~~~~IPVIg-NGdI~s~eDa 542 (693)
....+...++.+.+ .|||.|-+--- .. +--|+...-.++++++.+.. ++|+|. .|++ +.+++
T Consensus 180 ~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f 256 (340)
T PRK12858 180 KVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELF 256 (340)
T ss_pred ccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHH
Confidence 12345666777774 99999977311 11 11233333346778888877 578765 7777 76776
Q ss_pred HHHHhc--CCCc--CEEEEcHHHhhCC
Q 005508 543 NKHKSD--CPEL--ASCMIARGALIKP 565 (693)
Q Consensus 543 ~~~l~~--~~ga--DgVMIGRgaL~nP 565 (693)
.+.+.. ..|+ .||++||....++
T Consensus 257 ~~~l~~A~~aGa~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 257 RRTLEFACEAGADFSGVLCGRATWQDG 283 (340)
T ss_pred HHHHHHHHHcCCCccchhhhHHHHhhh
Confidence 655431 1688 9999999987765
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.21 E-value=2.5 Score=46.57 Aligned_cols=107 Identities=11% Similarity=-0.010 Sum_probs=73.7
Q ss_pred cccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEE-ecccccC-cc-CCCccHHHHH
Q 005508 442 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV-HGRTRQQ-RY-SKLADWDYIY 518 (693)
Q Consensus 442 GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItV-HgRtr~q-~y-tg~Adw~~I~ 518 (693)
||..+++..++.++- .+++||.+|..+. .+.++....+..+...|..-|++ |-.++.- .| ....|+..|.
T Consensus 183 gAr~~~N~~LL~~va-----~~~kPViLk~G~~--~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~ 255 (335)
T PRK08673 183 GARNMQNFDLLKEVG-----KTNKPVLLKRGMS--ATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVP 255 (335)
T ss_pred CcccccCHHHHHHHH-----cCCCcEEEeCCCC--CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHH
Confidence 678889988877654 3589999998774 24567788888888999866555 5323222 33 2346899999
Q ss_pred HHHHHcCCCceEEEeCCCCC------HHHHHHHHhcCCCcCEEEEcH
Q 005508 519 QCARKASDDLQVLGNGDIYS------YLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 519 ~i~~~~~~~IPVIgNGdI~s------~eDa~~~l~~~~gaDgVMIGR 559 (693)
.+++.. ++|||+.=+=.. +..+..++. .||||+||=.
T Consensus 256 ~lk~~~--~lPVi~d~sH~~G~~~~v~~~a~AAvA--~GAdGliIE~ 298 (335)
T PRK08673 256 VIKKLT--HLPVIVDPSHATGKRDLVEPLALAAVA--AGADGLIVEV 298 (335)
T ss_pred HHHHhc--CCCEEEeCCCCCccccchHHHHHHHHH--hCCCEEEEEe
Confidence 999887 699987532222 234455554 5999999873
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=91.20 E-value=23 Score=37.55 Aligned_cols=147 Identities=11% Similarity=0.052 Sum_probs=90.5
Q ss_pred CCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 393 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 393 ~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
...++++++.+.+.++..+-|+.+. ++|+|+|-+-. |.- .....+-+.+-.+.|.+.+++||.+---
T Consensus 68 ~~~~vi~gv~~~~~~~~~~~a~~a~-~~G~d~v~~~~--P~~----------~~~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 68 GRVPVIAGTGSNNTAEAIELTKRAE-KAGADAALVVT--PYY----------NKPSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred CCCcEEeccCCccHHHHHHHHHHHH-HcCCCEEEEcc--ccc----------CCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 4568899999999999999999887 68999998842 321 1123456667777777777899987643
Q ss_pred ---CCCCCChhHHHHHHHHHHHc-CCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhc
Q 005508 473 ---TGYFEGKNRIDSLIADIGTW-GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD 548 (693)
Q Consensus 473 ---~G~~d~~~~~~~la~~L~ea-G~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~ 548 (693)
+|..-+ .+++.+|.+. .+.+|-. + ..++..+.++.+..+.++.|+...|- .+...+.
T Consensus 135 P~~~g~~ls----~~~~~~L~~~p~v~giK~---------s-~~~~~~~~~~~~~~~~~~~v~~G~d~----~~~~~~~- 195 (284)
T cd00950 135 PGRTGVNIE----PETVLRLAEHPNIVGIKE---------A-TGDLDRVSELIALCPDDFAVLSGDDA----LTLPFLA- 195 (284)
T ss_pred hhHhCCCCC----HHHHHHHhcCCCEEEEEE---------C-CCCHHHHHHHHHhCCCCeEEEeCChH----hHHHHHH-
Confidence 333222 3344444332 2222221 1 23666777777666435655544432 1233344
Q ss_pred CCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 549 CPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 549 ~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
.|++|++.|.+.+ =|.++.++-+
T Consensus 196 -~G~~G~~s~~~n~-~p~~~~~~~~ 218 (284)
T cd00950 196 -LGGVGVISVAANV-APKLMAEMVR 218 (284)
T ss_pred -CCCCEEEehHHHh-hHHHHHHHHH
Confidence 5899999998753 3666666554
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=4.3 Score=44.46 Aligned_cols=136 Identities=9% Similarity=0.078 Sum_probs=81.3
Q ss_pred CeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC
Q 005508 395 DLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 473 (693)
Q Consensus 395 ~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~ 473 (693)
.|+.+.|=+. +.+.+.+|. .+||+-|-+- |.--.+.++-+...++++-... .++.|-.=+-.
T Consensus 86 VPV~lHLDHg~~~e~i~~ai-----~~GftSVMiD-----------~S~lp~eeNI~~T~evv~~Ah~-~GvsVEaElG~ 148 (321)
T PRK07084 86 IPIVLHLDHGDSFELCKDCI-----DSGFSSVMID-----------GSHLPYEENVALTKKVVEYAHQ-FDVTVEGELGV 148 (321)
T ss_pred CcEEEECCCCCCHHHHHHHH-----HcCCCEEEee-----------CCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEee
Confidence 4666666433 333332221 2466666663 2222344556666777765543 34444443321
Q ss_pred --CCCCC-------hhHHHHHHHHHHHcCCCEEEEecccccCccCC-------CccHHHHHHHHHHcCCCceEEEeCCCC
Q 005508 474 --GYFEG-------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSK-------LADWDYIYQCARKASDDLQVLGNGDIY 537 (693)
Q Consensus 474 --G~~d~-------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg-------~Adw~~I~~i~~~~~~~IPVIgNGdI~ 537 (693)
|..+. -.+..+....+++.|+|+|.+.-+|..+.|.+ ..||+.+++|++.++ ++|++.-|+=-
T Consensus 149 igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg 227 (321)
T PRK07084 149 LAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSS 227 (321)
T ss_pred ecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCC
Confidence 11111 11344455556678999999887777777754 358999999999984 59999999887
Q ss_pred CHHHHHHHHhc
Q 005508 538 SYLDWNKHKSD 548 (693)
Q Consensus 538 s~eDa~~~l~~ 548 (693)
.++++.+.+..
T Consensus 228 ~~~~~~~~~~~ 238 (321)
T PRK07084 228 VPQEYVKTINE 238 (321)
T ss_pred CcHHHHHHHHH
Confidence 77666555554
|
|
| >COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.16 E-value=2.7 Score=44.54 Aligned_cols=155 Identities=16% Similarity=0.230 Sum_probs=89.2
Q ss_pred CCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhhh----h-------hhccCCCCeEEEEe----cCCCHHHHHH
Q 005508 347 LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA----L-------LRRHSSEDLFGVQI----CGAYPDTLAR 411 (693)
Q Consensus 347 Mt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~----l-------l~~h~~e~p~gvQL----~G~~pe~~~~ 411 (693)
|.|.-|.||-+++...|+|++.-.-... ..+.|..++.. . +++......+++-+ ...++++..+
T Consensus 19 ~lTAYD~~~A~~~d~agvd~lLVGDSlg-mvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv~DmPF~sy~~s~~~a~~ 97 (268)
T COG0413 19 MLTAYDYPFAKLFDQAGVDVLLVGDSLG-MVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVVADLPFGSYEVSPEQALK 97 (268)
T ss_pred EEeccccHHHhhhhhcCCcEEEEeccHH-HHHcCCCCcceecHHHHHHHHHHHHhcCCCeeEEeCCCCcccCCCHHHHHH
Confidence 3466699999999999999764321110 11233333211 0 12222222222222 2335666655
Q ss_pred HHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC---------CCC------
Q 005508 412 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT---------GYF------ 476 (693)
Q Consensus 412 AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~---------G~~------ 476 (693)
.|-++.+++|.|+|-|-. | ..+.++|+.+.+. +|||.-=+-+ |+.
T Consensus 98 nA~r~~ke~gA~aVKlEG------------G-------~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~GGykvqGr~~ 157 (268)
T COG0413 98 NAARLMKEAGADAVKLEG------------G-------EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLGGYKVQGRTE 157 (268)
T ss_pred HHHHHHHHhCCCEEEEcC------------C-------HHHHHHHHHHHHc-CCceEEEecCChhhhhccCCeeeecCCH
Confidence 555554478999999842 2 2345555555432 7888765543 111
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeC
Q 005508 477 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 534 (693)
Q Consensus 477 d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG 534 (693)
+......+-++.|+++|+-+|.|-+- --+..++|.+.+ +||+||-|
T Consensus 158 ~~a~~l~~dA~ale~AGaf~ivlE~V----------p~~lA~~IT~~l--siPtIGIG 203 (268)
T COG0413 158 ESAEKLLEDAKALEEAGAFALVLECV----------PAELAKEITEKL--SIPTIGIG 203 (268)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEecc----------HHHHHHHHHhcC--CCCEEeec
Confidence 11234555678899999999998532 125678888888 79999877
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=91.15 E-value=2 Score=47.76 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=36.4
Q ss_pred CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 510 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 510 g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+...|+.|+.+++.. ++|||.-| |.+.+|+..+++ .|||+|.|+
T Consensus 208 ~~ltW~dl~wlr~~~--~~PvivKg-V~~~~dA~~a~~--~Gvd~I~Vs 251 (366)
T PLN02979 208 RTLSWKDVQWLQTIT--KLPILVKG-VLTGEDARIAIQ--AGAAGIIVS 251 (366)
T ss_pred CCCCHHHHHHHHhcc--CCCEEeec-CCCHHHHHHHHh--cCCCEEEEC
Confidence 446899999999987 69988755 679999999876 699999774
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.6 Score=46.74 Aligned_cols=42 Identities=19% Similarity=0.023 Sum_probs=36.5
Q ss_pred CccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 511 LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 511 ~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
...|+.+..+++.. ++||+.-| |.+++|+..+++ .|||+|.|
T Consensus 207 ~~~~~~l~~lr~~~--~~PvivKg-v~~~~dA~~a~~--~G~d~I~v 248 (351)
T cd04737 207 KLSPADIEFIAKIS--GLPVIVKG-IQSPEDADVAIN--AGADGIWV 248 (351)
T ss_pred CCCHHHHHHHHHHh--CCcEEEec-CCCHHHHHHHHH--cCCCEEEE
Confidence 35899999999988 69999886 899999988776 69999988
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=6.9 Score=43.33 Aligned_cols=84 Identities=17% Similarity=0.083 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCEEEEecc-------------cccCccCC---CccHHHHHHHHHHc-CCCceEEEeCCCC-CHHHHH
Q 005508 482 IDSLIADIGTWGASAVTVHGR-------------TRQQRYSK---LADWDYIYQCARKA-SDDLQVLGNGDIY-SYLDWN 543 (693)
Q Consensus 482 ~~~la~~L~eaG~daItVHgR-------------tr~q~ytg---~Adw~~I~~i~~~~-~~~IPVIgNGdI~-s~eDa~ 543 (693)
+...++...+.|+|.|-+--- +..-.|.+ ...-+.++.+.+.+ ..++||+..||=. +.+++.
T Consensus 219 Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L 298 (348)
T PRK09250 219 TGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLL 298 (348)
T ss_pred HHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHH
Confidence 333445557999999976321 11111211 11223445555554 1248999888877 444444
Q ss_pred HHHhc-----CCCcCEEEEcHHHhhCC
Q 005508 544 KHKSD-----CPELASCMIARGALIKP 565 (693)
Q Consensus 544 ~~l~~-----~~gaDgVMIGRgaL~nP 565 (693)
+++.. ..|+.||++||=+...|
T Consensus 299 ~~v~~a~~~i~aGa~Gv~iGRNIfQ~~ 325 (348)
T PRK09250 299 DAVRTAVINKRAGGMGLIIGRKAFQRP 325 (348)
T ss_pred HHHHHHHHhhhcCCcchhhchhhhcCC
Confidence 43322 16999999999776554
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.05 E-value=21 Score=38.63 Aligned_cols=198 Identities=18% Similarity=0.077 Sum_probs=116.6
Q ss_pred cEEEccCCCCCcHHHHHHHHHcCCCEEEecccccc-hhcc--CChhhhhhh----h--ccCCCCeEEEEe---cCCCHHH
Q 005508 341 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCT-NLLQ--GQASEWALL----R--RHSSEDLFGVQI---CGAYPDT 408 (693)
Q Consensus 341 riiLAPMt~v~dlpFRrl~~~~Gadl~~TEM~~a~-~ll~--g~~~e~~ll----~--~h~~e~p~gvQL---~G~~pe~ 408 (693)
.+++.| ++=|..--++..+.|...+|+--..+. .+.. ++..+|..+ + ....+-|+.|-+ +|+ +..
T Consensus 18 ~~~~~p--g~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~n 94 (289)
T COG2513 18 DPLVLP--GAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGE-ALN 94 (289)
T ss_pred CCEEec--CCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCc-HHH
Confidence 344444 344666667888899877665543322 2221 222223211 1 122456788877 355 778
Q ss_pred HHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCC--CCChhHHHHH
Q 005508 409 LARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY--FEGKNRIDSL 485 (693)
Q Consensus 409 ~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~--~d~~~~~~~l 485 (693)
.++.++.+. .+|+.+|.|-=- -.++.+..-.|-.|. .++.+.+-|++++++. +.++.+=-|+.. .+..+++++=
T Consensus 95 vartV~~~~-~aG~agi~iEDq-~~pk~cgh~~gk~l~-~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~R 171 (289)
T COG2513 95 VARTVRELE-QAGAAGIHIEDQ-VGPKRCGHLPGKELV-SIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIER 171 (289)
T ss_pred HHHHHHHHH-HcCcceeeeeec-ccchhcCCCCCCCcC-CHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHH
Confidence 888888887 689988887300 001111111233333 4444444455555544 667777777621 1234677888
Q ss_pred HHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEe----CC--CCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 486 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGN----GD--IYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgN----Gd--I~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
++...++|+|+|-.++.+ +.+.|.++.+.+ ++|+.+| |. ..|.++. .. -|+..|..|=
T Consensus 172 a~AY~eAGAD~if~~al~---------~~e~i~~f~~av--~~pl~~N~t~~g~tp~~~~~~L----~~-~Gv~~V~~~~ 235 (289)
T COG2513 172 AQAYVEAGADAIFPEALT---------DLEEIRAFAEAV--PVPLPANITEFGKTPLLTVAEL----AE-LGVKRVSYGL 235 (289)
T ss_pred HHHHHHcCCcEEccccCC---------CHHHHHHHHHhc--CCCeeeEeeccCCCCCcCHHHH----Hh-cCceEEEECc
Confidence 888899999999988653 467889999988 4666655 33 4565554 33 5899998873
Q ss_pred H
Q 005508 560 G 560 (693)
Q Consensus 560 g 560 (693)
.
T Consensus 236 ~ 236 (289)
T COG2513 236 T 236 (289)
T ss_pred H
Confidence 3
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.69 Score=53.53 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
++.+.++.|.++|+|.|.|. + ...++. .-.+.|+.+++..+ .--.|+.|.|.+++++..++. .|||+|.||.
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd--~-a~g~~~-~~~~~i~~ir~~~~-~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~ 313 (502)
T PRK07107 242 DYAERVPALVEAGADVLCID--S-SEGYSE-WQKRTLDWIREKYG-DSVKVGAGNVVDREGFRYLAE--AGADFVKVGI 313 (502)
T ss_pred hHHHHHHHHHHhCCCeEeec--C-cccccH-HHHHHHHHHHHhCC-CCceEEeccccCHHHHHHHHH--cCCCEEEECC
Confidence 56788899999999999885 1 122211 12578899998874 213567899999999999886 6999998854
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=90.95 E-value=2.6 Score=47.23 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=63.8
Q ss_pred HHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEE-----eccc-ccCccCCCccHHHHH----HHHHHc
Q 005508 456 IEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV-----HGRT-RQQRYSKLADWDYIY----QCARKA 524 (693)
Q Consensus 456 V~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItV-----HgRt-r~q~ytg~Adw~~I~----~i~~~~ 524 (693)
++.+++.. ++||.+=|--+. +..+..+++++++++|+|+|.| |+-. +..+-.-..+.++++ .|++.+
T Consensus 104 i~~~k~~~~~~pvIaSi~~~~--s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~ 181 (385)
T PLN02495 104 FKQLKEEYPDRILIASIMEEY--NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA 181 (385)
T ss_pred HHHHHhhCCCCcEEEEccCCC--CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh
Confidence 45565555 679998553222 4578899999999999999998 3311 111000012345554 445555
Q ss_pred CCCceEE--EeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 525 SDDLQVL--GNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 525 ~~~IPVI--gNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
++||+ ..-++.+..+..+.+.. .|||||.+-
T Consensus 182 --~iPv~vKLsPn~t~i~~ia~aa~~-~Gadgi~li 214 (385)
T PLN02495 182 --TVPVWAKMTPNITDITQPARVALK-SGCEGVAAI 214 (385)
T ss_pred --cCceEEEeCCChhhHHHHHHHHHH-hCCCEEEEe
Confidence 58887 56778788888776776 799999653
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=90.72 E-value=1.5 Score=48.32 Aligned_cols=88 Identities=13% Similarity=0.217 Sum_probs=63.0
Q ss_pred ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccc-------cC------------------------------
Q 005508 464 DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-------QQ------------------------------ 506 (693)
Q Consensus 464 ~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr-------~q------------------------------ 506 (693)
+.|+.+-+-.. .+...+.+++++++.+|+++|.||--+. ..
T Consensus 117 ~~~~w~Qly~~--~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (344)
T cd02922 117 DQPLFFQLYVN--KDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSG 194 (344)
T ss_pred CCcEEEEEeec--CCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhh
Confidence 35666544443 2446678899999999999999973221 00
Q ss_pred ccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 507 RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 507 ~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
.+.+...|+.|+.+++.. ++|||.- +|.+.+|+..+.+ .|||+|.|.
T Consensus 195 ~~~~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~--~G~d~I~vs 241 (344)
T cd02922 195 FIDPTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAE--YGVDGIVLS 241 (344)
T ss_pred ccCCCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHH--cCCCEEEEE
Confidence 011235799999999988 6999887 6789999988765 699998754
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=90.67 E-value=25 Score=37.09 Aligned_cols=150 Identities=11% Similarity=0.025 Sum_probs=94.9
Q ss_pred CCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 393 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 393 ~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
...|+++++.+.+..+..+.|+.++ ++|+|+|-+- -|.-. .-..+-+.+-.++|.+.+++||.+---
T Consensus 65 ~~~~vi~gv~~~~~~~~i~~a~~a~-~~Gad~v~v~--pP~y~----------~~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 65 GRVPVIAGVGANSTREAIELARHAE-EAGADGVLVV--PPYYN----------KPSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred CCCeEEEecCCccHHHHHHHHHHHH-HcCCCEEEEC--CCcCC----------CCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 4578999999999998999998887 6899999994 24311 123566777788888878999998754
Q ss_pred CCCCCChhHHHHHHHHHHH-cCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCC
Q 005508 473 TGYFEGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 551 (693)
Q Consensus 473 ~G~~d~~~~~~~la~~L~e-aG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g 551 (693)
.+.... .-..+++.+|.+ -.+.+|- ++. .|+..+.++.+..+.++.| .+|+ + ..+...+. .|
T Consensus 132 P~~tg~-~l~~~~~~~L~~~~~v~giK---------~s~-~d~~~~~~~~~~~~~~~~v-~~G~--d-~~~~~~l~--~G 194 (281)
T cd00408 132 PGRTGV-DLSPETIARLAEHPNIVGIK---------DSS-GDLDRLTRLIALLGPDFAV-LSGD--D-DLLLPALA--LG 194 (281)
T ss_pred ccccCC-CCCHHHHHHHhcCCCEEEEE---------eCC-CCHHHHHHHHHhcCCCeEE-EEcc--h-HHHHHHHH--cC
Confidence 432111 112345555543 1222221 222 5778888887776434444 4565 2 23334444 58
Q ss_pred cCEEEEcHHHhhCCCchhHHHh
Q 005508 552 LASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 552 aDgVMIGRgaL~nPwiF~eIke 573 (693)
++|++.|-+.+ -|+++.++-+
T Consensus 195 ~~G~i~~~~n~-~p~~~~~~~~ 215 (281)
T cd00408 195 ADGAISGAANV-APKLAVALYE 215 (281)
T ss_pred CCEEEehHHhh-CHHHHHHHHH
Confidence 99999886543 4777777754
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=90.52 E-value=9.9 Score=37.82 Aligned_cols=121 Identities=15% Similarity=0.040 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccc-cccCEEE--EecCCCCCCh
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT-VDKPITI--KVRTGYFEGK 479 (693)
Q Consensus 403 G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~-v~iPVtV--KiR~G~~d~~ 479 (693)
-.++++..+.++.+. .. ++.|+++. |. ....| .+.++.+++. .++||.+ |+...
T Consensus 9 ~~~~~~~~~~~~~l~-~~-i~~ieig~--~~--~~~~g------------~~~i~~i~~~~~~~~i~~~~~v~~~----- 65 (202)
T cd04726 9 LLDLEEALELAKKVP-DG-VDIIEAGT--PL--IKSEG------------MEAVRALREAFPDKIIVADLKTADA----- 65 (202)
T ss_pred CCCHHHHHHHHHHhh-hc-CCEEEcCC--HH--HHHhC------------HHHHHHHHHHCCCCEEEEEEEeccc-----
Confidence 346788888888887 44 99999942 22 21111 3566666664 3778776 44421
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEe-CCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGN-GDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgN-GdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
...+++.+.++|++.|++|+.+.. ...-+++..+++ . +++++.. =...|++++.+++. .++|.|.+.
T Consensus 66 --~~~~~~~~~~aGad~i~~h~~~~~-----~~~~~~i~~~~~-~--g~~~~v~~~~~~t~~e~~~~~~--~~~d~v~~~ 133 (202)
T cd04726 66 --GALEAEMAFKAGADIVTVLGAAPL-----STIKKAVKAAKK-Y--GKEVQVDLIGVEDPEKRAKLLK--LGVDIVILH 133 (202)
T ss_pred --cHHHHHHHHhcCCCEEEEEeeCCH-----HHHHHHHHHHHH-c--CCeEEEEEeCCCCHHHHHHHHH--CCCCEEEEc
Confidence 124568889999999999976421 011234555554 3 4676653 66778888888554 589999885
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=90.52 E-value=2.2 Score=47.59 Aligned_cols=51 Identities=16% Similarity=-0.035 Sum_probs=39.8
Q ss_pred CccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc----HHHhhCCC
Q 005508 511 LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA----RGALIKPW 566 (693)
Q Consensus 511 ~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG----RgaL~nPw 566 (693)
..+|+.|+.+++.. ++|||.=| |.+.+|+..+.+ .|||+|.|+ |.+...|.
T Consensus 214 ~~~w~~i~~l~~~~--~~PvivKG-v~~~eda~~a~~--~Gvd~I~VS~HGGrq~~~~~a 268 (367)
T TIGR02708 214 KLSPRDIEEIAGYS--GLPVYVKG-PQCPEDADRALK--AGASGIWVTNHGGRQLDGGPA 268 (367)
T ss_pred CCCHHHHHHHHHhc--CCCEEEeC-CCCHHHHHHHHH--cCcCEEEECCcCccCCCCCCc
Confidence 45899999999988 69999775 889999999776 699998663 44444443
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=90.52 E-value=1.3 Score=46.82 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=66.0
Q ss_pred ccCEE--EEec---CCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCC
Q 005508 464 DKPIT--IKVR---TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS 538 (693)
Q Consensus 464 ~iPVt--VKiR---~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s 538 (693)
.+||. +|-+ .||-....+..++|+..+++|+++|.|..- ..|.+ -+++.+..+++.+ ++||+.--=|.+
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte---~~~f~-g~~~~l~~v~~~v--~iPvl~kdfi~~ 122 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTD---ERFFQ-GSLEYLRAARAAV--SLPVLRKDFIID 122 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecc---cccCC-CCHHHHHHHHHhc--CCCEEeeeecCC
Confidence 35664 4542 255444456789999999999999988632 23322 3488999999988 799998776777
Q ss_pred HHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 539 YLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 539 ~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
+.++.+... .|||+|.+.=.+|.
T Consensus 123 ~~qi~~a~~--~GAD~VlLi~~~l~ 145 (260)
T PRK00278 123 PYQIYEARA--AGADAILLIVAALD 145 (260)
T ss_pred HHHHHHHHH--cCCCEEEEEeccCC
Confidence 778877665 69999977655553
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.94 Score=48.65 Aligned_cols=86 Identities=12% Similarity=0.056 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecccccCcc-CCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH---hcCCCcCE
Q 005508 479 KNRIDSLIADIGTWGASAVTVHGRTRQQRY-SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK---SDCPELAS 554 (693)
Q Consensus 479 ~~~~~~la~~L~eaG~daItVHgRtr~q~y-tg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l---~~~~gaDg 554 (693)
.....++++.+.+.|+++|.+-|-|.+..+ +..-..+.++.+.+.+..++|||+.=+-.+.+++.++. ++ .|||+
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~-~Gad~ 98 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEE-AGADA 98 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHH-cCCCE
Confidence 456788999999999999999998876543 22223556666777666579998555556666654432 34 69999
Q ss_pred EEEcHHHhhCC
Q 005508 555 CMIARGALIKP 565 (693)
Q Consensus 555 VMIGRgaL~nP 565 (693)
||+.-..+..|
T Consensus 99 v~v~pP~y~~~ 109 (294)
T TIGR02313 99 AMVIVPYYNKP 109 (294)
T ss_pred EEEcCccCCCC
Confidence 99999888777
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=90.43 E-value=4 Score=43.52 Aligned_cols=137 Identities=19% Similarity=0.141 Sum_probs=79.3
Q ss_pred HHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccc-------cccCEEEEecCCCCCChhHHHH
Q 005508 412 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT-------VDKPITIKVRTGYFEGKNRIDS 484 (693)
Q Consensus 412 AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~-------v~iPVtVKiR~G~~d~~~~~~~ 484 (693)
.|+++. .+|||.|=+ |-...++ --|+-+.+--..+.+...+++|++. +++|++ ++. +.+++..
T Consensus 27 sA~i~~-~aG~d~ilv--GdSlgm~-~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~-----sy~-~~e~a~~ 96 (263)
T TIGR00222 27 FAKLFA-DAGVDVILV--GDSLGMV-VLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFM-----SYA-TPEQALK 96 (263)
T ss_pred HHHHHH-HcCCCEEEE--CccHhHH-hcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcC-----CCC-CHHHHHH
Confidence 344554 689999875 3222211 2355555555677788888888887 466665 443 3566666
Q ss_pred HHHHH-HHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEE---------Ee--CCCC----CHHHHHHHH--
Q 005508 485 LIADI-GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL---------GN--GDIY----SYLDWNKHK-- 546 (693)
Q Consensus 485 la~~L-~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVI---------gN--GdI~----s~eDa~~~l-- 546 (693)
-+.+| +++|+++|.|-|. ....+.|+.+.+. .|||+ ++ ||.. +.+.+.+++
T Consensus 97 na~rl~~eaGa~aVkiEgg--------~~~~~~i~~l~~~---gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~ 165 (263)
T TIGR00222 97 NAARVMQETGANAVKLEGG--------EWLVETVQMLTER---GVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLED 165 (263)
T ss_pred HHHHHHHHhCCeEEEEcCc--------HhHHHHHHHHHHC---CCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHH
Confidence 66665 4599999999874 1122444444443 58998 44 5442 444433332
Q ss_pred ----hcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 547 ----SDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 547 ----~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
++ .||+++.+= .+- +.+.++|-+
T Consensus 166 A~a~e~-AGA~~ivlE--~vp-~~~a~~It~ 192 (263)
T TIGR00222 166 ALALEE-AGAQLLVLE--CVP-VELAAKITE 192 (263)
T ss_pred HHHHHH-cCCCEEEEc--CCc-HHHHHHHHH
Confidence 34 689988653 111 345555544
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.75 Score=52.90 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+..+.++.|.++|++.|++-.-.. . . ..-++.+..+++..+ ++|||+ |+|.|.+++..+++ .|||+|-+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g--~-~-~~vl~~i~~i~~~~p-~~~vi~-g~v~t~e~a~~l~~--aGad~i~vg 297 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHG--H-S-EGVLDRVREIKAKYP-DVQIIA-GNVATAEAARALIE--AGADAVKVG 297 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCC--c-c-hhHHHHHHHHHhhCC-CCCEEE-eccCCHHHHHHHHH--cCCCEEEEC
Confidence 457889999999999998742211 1 1 124577888988876 689888 99999999999776 699999775
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=2.6 Score=43.88 Aligned_cols=107 Identities=13% Similarity=-0.002 Sum_probs=76.0
Q ss_pred CEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCc--eEEEeCCCCCHHHHH
Q 005508 466 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL--QVLGNGDIYSYLDWN 543 (693)
Q Consensus 466 PVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~I--PVIgNGdI~s~eDa~ 543 (693)
+|..=+|. ++.+++..+++.|.+.|+..|-|.-|+ +...+.|+++++...... -+||.|-|.|.++++
T Consensus 16 ~vi~Vvr~---~~~~~a~~~~~al~~gGi~~iEiT~~t-------p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~ 85 (222)
T PRK07114 16 GMVPVFYH---ADVEVAKKVIKACYDGGARVFEFTNRG-------DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAA 85 (222)
T ss_pred CEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCC-------CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHH
Confidence 55555775 456889999999999999999998665 344566777754321112 389999999999999
Q ss_pred HHHhcCCCcCEEEEcHHHhhCCCchhHHHhccC----CCCCHHHHHHH
Q 005508 544 KHKSDCPELASCMIARGALIKPWIFTEIKEQRH----WDITSGERLNI 587 (693)
Q Consensus 544 ~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~----~d~s~~Erl~i 587 (693)
.+++ .||+.+|-= -.+|.+.+..++... --.|++|-..-
T Consensus 86 ~a~~--aGA~FiVsP---~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A 128 (222)
T PRK07114 86 LYIQ--LGANFIVTP---LFNPDIAKVCNRRKVPYSPGCGSLSEIGYA 128 (222)
T ss_pred HHHH--cCCCEEECC---CCCHHHHHHHHHcCCCEeCCCCCHHHHHHH
Confidence 9887 589988742 257777777665432 14577776544
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=90.22 E-value=2.1 Score=42.82 Aligned_cols=92 Identities=12% Similarity=0.152 Sum_probs=69.8
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
.|+..=+|. .+..++..+++.+.+.|++.|.|.-++ +...+.++.+++..+ -..||.|.|.+.+++..
T Consensus 4 ~~~~~i~r~---~~~~~~~~~~~~l~~~G~~~vev~~~~-------~~~~~~i~~l~~~~~--~~~iGag~v~~~~~~~~ 71 (190)
T cd00452 4 QPLVAVLRG---DDAEDALALAEALIEGGIRAIEITLRT-------PGALEAIRALRKEFP--EALIGAGTVLTPEQADA 71 (190)
T ss_pred CcEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCC-------hhHHHHHHHHHHHCC--CCEEEEEeCCCHHHHHH
Confidence 355555675 346788999999999999999997543 235568899988874 35789999999999999
Q ss_pred HHhcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 545 HKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
+++ .|+|+|+++- .+|.+....+.
T Consensus 72 a~~--~Ga~~i~~p~---~~~~~~~~~~~ 95 (190)
T cd00452 72 AIA--AGAQFIVSPG---LDPEVVKAANR 95 (190)
T ss_pred HHH--cCCCEEEcCC---CCHHHHHHHHH
Confidence 887 5999998762 35566655554
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=90.14 E-value=7.5 Score=42.04 Aligned_cols=127 Identities=6% Similarity=0.050 Sum_probs=86.3
Q ss_pred EEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc--cCEEEEecCCC
Q 005508 398 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGY 475 (693)
Q Consensus 398 gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~--iPVtVKiR~G~ 475 (693)
...|...+++.+.+.+.. ..||..|-|-.| . .+++.-.+.|++|++.++ +.|.|-.--+|
T Consensus 104 ~~~l~~~~~~~~~~~~~~---~~Gf~~~KiKvG----------~-----~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w 165 (307)
T TIGR01927 104 VALLPAGDPALLLLRSAK---AEGFRTFKWKVG----------V-----GELAREGMLVNLLLEALPDKAELRLDANGGL 165 (307)
T ss_pred eeeccCCCHHHHHHHHHH---hCCCCEEEEEeC----------C-----CChHHHHHHHHHHHHHcCCCCeEEEeCCCCC
Confidence 344555678877665543 358988888542 1 145556777888888763 33444333455
Q ss_pred CCChhHHHHHHHHHHH---cCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCc
Q 005508 476 FEGKNRIDSLIADIGT---WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 552 (693)
Q Consensus 476 ~d~~~~~~~la~~L~e---aG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~ga 552 (693)
+..++.++++.|++ .++.+| +|-. ..++..+.+++.. ++||.+.=.+.+..|+..++.. ..+
T Consensus 166 --~~~~A~~~~~~l~~~~~~~i~~i-------EqP~---~~~~~~~~l~~~~--~~Pia~dEs~~~~~d~~~~~~~-~~~ 230 (307)
T TIGR01927 166 --SPDEAQQFLKALDPNLRGRIAFL-------EEPL---PDADEMSAFSEAT--GTAIALDESLWELPQLADEYGP-GWR 230 (307)
T ss_pred --CHHHHHHHHHhcccccCCCceEE-------eCCC---CCHHHHHHHHHhC--CCCEEeCCCcCChHHHHHHHhc-CCC
Confidence 34679999999987 677766 3332 2336677888887 6999999999999999998875 556
Q ss_pred CEEEE
Q 005508 553 ASCMI 557 (693)
Q Consensus 553 DgVMI 557 (693)
|.|.+
T Consensus 231 d~i~i 235 (307)
T TIGR01927 231 GALVI 235 (307)
T ss_pred ceEEE
Confidence 77763
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.12 E-value=7.5 Score=39.89 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=76.0
Q ss_pred EEEecCCC-HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCC
Q 005508 398 GVQICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF 476 (693)
Q Consensus 398 gvQL~G~~-pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~ 476 (693)
.++|||-. ++++..|+ .+|+|+|-+.+-...+.. -.++.+.+|.+.+...+ .+|.|-..
T Consensus 4 ~vKICGi~~~eda~~~~-----~~Gad~iGfI~~~~S~R~----------V~~~~a~~i~~~~~~~i-~~VgVf~~---- 63 (210)
T PRK01222 4 RVKICGITTPEDAEAAA-----ELGADAIGFVFYPKSPRY----------VSPEQAAELAAALPPFV-KVVGVFVN---- 63 (210)
T ss_pred eEEECCCCcHHHHHHHH-----HcCCCEEEEccCCCCCCc----------CCHHHHHHHHHhCCCCC-CEEEEEeC----
Confidence 48999964 55543333 468898888643222211 24677778877765322 23444222
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 477 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 477 d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
.....+...+++.+++.|.+||- .+.+++..+++.. +++||-.=.|.+..+...+......||.++
T Consensus 64 ---~~~~~i~~~~~~~~~d~vQLHg~---------e~~~~~~~l~~~~--~~~iik~i~v~~~~~l~~~~~~~~~~d~~L 129 (210)
T PRK01222 64 ---ASDEEIDEIVETVPLDLLQLHGD---------ETPEFCRQLKRRY--GLPVIKALRVRSAGDLEAAAAYYGDADGLL 129 (210)
T ss_pred ---CCHHHHHHHHHhcCCCEEEECCC---------CCHHHHHHHHhhc--CCcEEEEEecCCHHHHHHHHhhhccCCEEE
Confidence 22456677788999999999972 3456788888765 466665445545444444333224678887
Q ss_pred Ec
Q 005508 557 IA 558 (693)
Q Consensus 557 IG 558 (693)
+=
T Consensus 130 ~D 131 (210)
T PRK01222 130 LD 131 (210)
T ss_pred Ec
Confidence 64
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=2.4 Score=43.47 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=78.6
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
.||..=+|. ++.+++..+++.|.+.|+..|-|.-|+ +.-.+.|+++++..+ --+||.|-|.|.+++++
T Consensus 4 ~~vv~Vir~---~~~~~a~~ia~al~~gGi~~iEit~~t-------p~a~~~I~~l~~~~~--~~~vGAGTVl~~e~a~~ 71 (201)
T PRK06015 4 QPVIPVLLI---DDVEHAVPLARALAAGGLPAIEITLRT-------PAALDAIRAVAAEVE--EAIVGAGTILNAKQFED 71 (201)
T ss_pred CCEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHCC--CCEEeeEeCcCHHHHHH
Confidence 355555775 456889999999999999999998654 345678999998875 36799999999999999
Q ss_pred HHhcCCCcCEEEEcHHHhhCCCchhHHHhccC----CCCCHHHHHHHH
Q 005508 545 HKSDCPELASCMIARGALIKPWIFTEIKEQRH----WDITSGERLNIM 588 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~----~d~s~~Erl~il 588 (693)
+++ .|++.+|-= -.+|.+.+..++... --.|++|-+.-+
T Consensus 72 ai~--aGA~FivSP---~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~ 114 (201)
T PRK06015 72 AAK--AGSRFIVSP---GTTQELLAAANDSDVPLLPGAATPSEVMALR 114 (201)
T ss_pred HHH--cCCCEEECC---CCCHHHHHHHHHcCCCEeCCCCCHHHHHHHH
Confidence 887 589988642 245666666555432 145777765543
|
|
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=89.84 E-value=3.9 Score=44.38 Aligned_cols=138 Identities=9% Similarity=-0.043 Sum_probs=80.3
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHc
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 492 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ea 492 (693)
++.+. ++|++.|.+|+=. .+.++..-... ...+...+.++.+++ .++++.+-+=.|..++.++..+++..+.+.
T Consensus 155 l~~Lk-eaG~~~v~~~lEt-s~~~~~~i~~~---~t~~~~i~~i~~a~~-~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l 228 (336)
T PRK06256 155 AERLK-EAGVDRYNHNLET-SRSYFPNVVTT---HTYEDRIDTCEMVKA-AGIEPCSGGIIGMGESLEDRVEHAFFLKEL 228 (336)
T ss_pred HHHHH-HhCCCEEecCCcc-CHHHHhhcCCC---CCHHHHHHHHHHHHH-cCCeeccCeEEeCCCCHHHHHHHHHHHHhC
Confidence 34455 6799999887655 44333211111 234445555555544 356555444445556778889999999999
Q ss_pred CCCEEEEeccc-----ccCccCCCccHHHHHHH---HHHcCCCceEEEeCCC-CCHHHHHHHHhcCCCcCEEEEcH
Q 005508 493 GASAVTVHGRT-----RQQRYSKLADWDYIYQC---ARKASDDLQVLGNGDI-YSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 493 G~daItVHgRt-----r~q~ytg~Adw~~I~~i---~~~~~~~IPVIgNGdI-~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
|++.|.++.-+ .-........+++++.+ +-..| +..|...|+= ....+...+.. .||+++|+|=
T Consensus 229 ~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p-~~~I~~~~gr~~~~~~~~~~~~--~g~~~~~~g~ 301 (336)
T PRK06256 229 DADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINP-DKEIRIAGGREVNLRSLQPLGL--GGANSVIVGN 301 (336)
T ss_pred CCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCeeEecCchhhhchhhHHHHh--ccCceeeECC
Confidence 99999887432 21111222344544433 33445 5666555554 56666665443 4999999993
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.82 E-value=31 Score=36.82 Aligned_cols=148 Identities=11% Similarity=0.048 Sum_probs=91.1
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe
Q 005508 392 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 392 ~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi 471 (693)
....|+++++.+.+.++..+.|+.++ ++|+|+|-+-. |.- ..-..+-+.+-.+.|.+++++||.+--
T Consensus 68 ~~~~~vi~gv~~~~~~~~i~~a~~a~-~~G~d~v~~~p--P~~----------~~~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 68 NGRVPVIAGTGSNSTAEAIELTKFAE-KAGADGALVVT--PYY----------NKPTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred CCCCcEEeecCCchHHHHHHHHHHHH-HcCCCEEEECC--CcC----------CCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34468999999999999999999987 68999998842 321 011346677777777777789998864
Q ss_pred c---CCCCCChhHHHHHHHHHHHcC-CCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh
Q 005508 472 R---TGYFEGKNRIDSLIADIGTWG-ASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 547 (693)
Q Consensus 472 R---~G~~d~~~~~~~la~~L~eaG-~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~ 547 (693)
- +|..- ..+++.+|.+.+ +-+|- ++ ..|...+.++.+..+.++.|+...|-. +...+.
T Consensus 135 ~P~~~g~~l----~~~~~~~L~~~p~v~giK---------~s-~~d~~~~~~~~~~~~~~~~v~~G~d~~----~~~~l~ 196 (292)
T PRK03170 135 VPGRTGVDI----LPETVARLAEHPNIVGIK---------EA-TGDLERVSELIELVPDDFAVYSGDDAL----ALPFLA 196 (292)
T ss_pred CccccCCCC----CHHHHHHHHcCCCEEEEE---------EC-CCCHHHHHHHHHhCCCCeEEEECChHh----HHHHHH
Confidence 3 33321 234555554332 22221 11 236677777776654334444332221 223343
Q ss_pred cCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 548 DCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 548 ~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
.|++|++.|.+.+ -|.++.++-+
T Consensus 197 --~G~~G~is~~~n~-~P~~~~~l~~ 219 (292)
T PRK03170 197 --LGGVGVISVAANV-APKEMAEMCD 219 (292)
T ss_pred --cCCCEEEEhHHhh-hHHHHHHHHH
Confidence 5899999887763 4777777654
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.73 E-value=3.6 Score=42.42 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=76.5
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCC-ceEEEeCCCCCHHHHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDD-LQVLGNGDIYSYLDWN 543 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~-IPVIgNGdI~s~eDa~ 543 (693)
.+|..=+|. ++.+++..+++.|.+.|+..|-|.-|+ +.-.+.|+++++..+.. --+||.|-|.|.+++.
T Consensus 13 ~~vi~vir~---~~~~~a~~~~~al~~~Gi~~iEit~~~-------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~ 82 (213)
T PRK06552 13 NGVVAVVRG---ESKEEALKISLAVIKGGIKAIEVTYTN-------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTAR 82 (213)
T ss_pred CCEEEEEEC---CCHHHHHHHHHHHHHCCCCEEEEECCC-------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHH
Confidence 466666786 356889999999999999999998664 34567899998877310 2479999999999999
Q ss_pred HHHhcCCCcCEEEEcHHHhhCCCchhHHHhcc-CC---CCCHHHHHHHH
Q 005508 544 KHKSDCPELASCMIARGALIKPWIFTEIKEQR-HW---DITSGERLNIM 588 (693)
Q Consensus 544 ~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~-~~---d~s~~Erl~il 588 (693)
.+++ .|++.+|- =-.+|.+.+-.++.. .+ -.|.+|-...+
T Consensus 83 ~a~~--aGA~Fivs---P~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~ 126 (213)
T PRK06552 83 LAIL--AGAQFIVS---PSFNRETAKICNLYQIPYLPGCMTVTEIVTAL 126 (213)
T ss_pred HHHH--cCCCEEEC---CCCCHHHHHHHHHcCCCEECCcCCHHHHHHHH
Confidence 9887 59999882 123455555444432 11 34566654443
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=89.72 E-value=2.7 Score=43.19 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=78.8
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
.+|..=+|. ++.+++..+++.|.+.|+..|-|.-|+ +.-++.|+++++..+ + -+||.|-|.|.++++.
T Consensus 8 ~~liaVlr~---~~~e~a~~~~~al~~~Gi~~iEit~~t-------~~a~~~i~~l~~~~~-~-~~vGAGTVl~~~~a~~ 75 (204)
T TIGR01182 8 AKIVPVIRI---DDVDDALPLAKALIEGGLRVLEVTLRT-------PVALDAIRLLRKEVP-D-ALIGAGTVLNPEQLRQ 75 (204)
T ss_pred CCEEEEEec---CCHHHHHHHHHHHHHcCCCEEEEeCCC-------ccHHHHHHHHHHHCC-C-CEEEEEeCCCHHHHHH
Confidence 466666786 456889999999999999999997654 345678999998875 3 5799999999999999
Q ss_pred HHhcCCCcCEEEEcHHHhhCCCchhHHHhccC-C---CCCHHHHHHH
Q 005508 545 HKSDCPELASCMIARGALIKPWIFTEIKEQRH-W---DITSGERLNI 587 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~-~---d~s~~Erl~i 587 (693)
+++ .||+.++- =+ .+|.+.+..++... + -.|++|-..-
T Consensus 76 a~~--aGA~Fivs-P~--~~~~v~~~~~~~~i~~iPG~~TptEi~~A 117 (204)
T TIGR01182 76 AVD--AGAQFIVS-PG--LTPELAKHAQDHGIPIIPGVATPSEIMLA 117 (204)
T ss_pred HHH--cCCCEEEC-CC--CCHHHHHHHHHcCCcEECCCCCHHHHHHH
Confidence 887 59998853 22 27777776665432 1 3567775543
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.70 E-value=8.6 Score=41.04 Aligned_cols=182 Identities=13% Similarity=0.137 Sum_probs=102.4
Q ss_pred cCCCCCcH--HHHHHHHHcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCCC---HHHH----HHHHHHH
Q 005508 346 PLTTVGNL--PFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAY---PDTL----ARTVELI 416 (693)
Q Consensus 346 PMt~v~dl--pFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~~---pe~~----~~AA~~~ 416 (693)
|..+.-|. -+|.+. +.|++.+-+-.-++..+.. ....+.|++++|.+++ ++.+ .-..+-+
T Consensus 38 p~~gl~d~e~~v~~v~-~~g~dav~~~~G~~~~~~~----------~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~a 106 (265)
T COG1830 38 PIEGLEDPENIVAKVA-EAGADAVAMTPGIARSVHR----------GYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDA 106 (265)
T ss_pred CcccccCHHHHHHHHH-hcCCCEEEecHhHHhhcCc----------cccCCcCEEEEeccccccCCCcccceeeeeHHHH
Confidence 55555553 355544 5688877554333332211 1223668888888762 2111 1111222
Q ss_pred hhhCCCcEE--EEcCCCCCcccccCCccccccCChHHHHHHHHHhccc--cccCEEEE--ecCCCC----CChhHHHHH-
Q 005508 417 DQQCTVDFI--DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT--VDKPITIK--VRTGYF----EGKNRIDSL- 485 (693)
Q Consensus 417 ~~~aG~D~I--DLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~--v~iPVtVK--iR~G~~----d~~~~~~~l- 485 (693)
. ..|+|+| -||.|.... .+.++++.+.+..+ .++|+.+= .|.-.. +...+....
T Consensus 107 i-~lgadAV~~~Vy~Gse~e--------------~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~a 171 (265)
T COG1830 107 I-RLGADAVGATVYVGSETE--------------REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYA 171 (265)
T ss_pred H-hCCCcEEEEEEecCCcch--------------HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHH
Confidence 2 3467754 556655432 44444444444333 38887762 232111 112233443
Q ss_pred HHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCC--HHHHH----HHHhcCCCcCEEEEcH
Q 005508 486 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS--YLDWN----KHKSDCPELASCMIAR 559 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s--~eDa~----~~l~~~~gaDgVMIGR 559 (693)
++...+.|+|.|-+ .|++. -+-++++.+.+ .+||+..||=.. .+++. .+++ .|+.|+.+||
T Consensus 172 aRlaaelGADIiK~-------~ytg~--~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~--aGa~G~~~GR 238 (265)
T COG1830 172 ARLAAELGADIIKT-------KYTGD--PESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIE--AGAMGVAVGR 238 (265)
T ss_pred HHHHHHhcCCeEee-------cCCCC--hHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHH--ccCcchhhhh
Confidence 44457899999854 56653 37788888888 499999998876 33333 3333 5999999999
Q ss_pred HHhhCCC
Q 005508 560 GALIKPW 566 (693)
Q Consensus 560 gaL~nPw 566 (693)
=+...|.
T Consensus 239 NifQ~~~ 245 (265)
T COG1830 239 NIFQHED 245 (265)
T ss_pred hhhccCC
Confidence 8876654
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.51 E-value=2.7 Score=43.38 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=76.4
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
.||.-=+|. ++.+++..+++.|.+.|+.+|-|.=|| +.-.+.|+.+++.++ =-+||.|=|.+++++.+
T Consensus 13 ~~vI~Vlr~---~~~e~a~~~a~Ali~gGi~~IEITl~s-------p~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~ 80 (211)
T COG0800 13 QPVVPVIRG---DDVEEALPLAKALIEGGIPAIEITLRT-------PAALEAIRALAKEFP--EALIGAGTVLNPEQARQ 80 (211)
T ss_pred CCeeEEEEe---CCHHHHHHHHHHHHHcCCCeEEEecCC-------CCHHHHHHHHHHhCc--ccEEccccccCHHHHHH
Confidence 355555676 456889999999999999999998654 456789999999985 56999999999999999
Q ss_pred HHhcCCCcCEEEEcHHHhhCCCchhHHHhc----c-CC---CCCHHHHHHHH
Q 005508 545 HKSDCPELASCMIARGALIKPWIFTEIKEQ----R-HW---DITSGERLNIM 588 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRgaL~nPwiF~eIke~----~-~~---d~s~~Erl~il 588 (693)
+.. .|++.+. -|.+=.++.+. . ++ -.|++|-+.-+
T Consensus 81 a~~--aGa~fiV-------sP~~~~ev~~~a~~~~ip~~PG~~TptEi~~Al 123 (211)
T COG0800 81 AIA--AGAQFIV-------SPGLNPEVAKAANRYGIPYIPGVATPTEIMAAL 123 (211)
T ss_pred HHH--cCCCEEE-------CCCCCHHHHHHHHhCCCcccCCCCCHHHHHHHH
Confidence 877 5888764 35555444432 1 12 34777865543
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=89.41 E-value=2.4 Score=43.31 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=73.2
Q ss_pred CEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH
Q 005508 466 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 545 (693)
Q Consensus 466 PVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~ 545 (693)
+|..=+|. ++.+++..+++.|.+.|+..|-|.-|+ +.-++.|+.+++..+ + -+||.|-|.|.++++.+
T Consensus 9 ~iiaVir~---~~~~~a~~~~~al~~gGi~~iEiT~~t-------~~a~~~I~~l~~~~p-~-~~vGAGTV~~~e~a~~a 76 (196)
T PF01081_consen 9 KIIAVIRG---DDPEDAVPIAEALIEGGIRAIEITLRT-------PNALEAIEALRKEFP-D-LLVGAGTVLTAEQAEAA 76 (196)
T ss_dssp SEEEEETT---SSGGGHHHHHHHHHHTT--EEEEETTS-------TTHHHHHHHHHHHHT-T-SEEEEES--SHHHHHHH
T ss_pred CEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHHCC-C-CeeEEEeccCHHHHHHH
Confidence 56666776 456789999999999999999998765 334688999998886 3 57899999999999999
Q ss_pred HhcCCCcCEEEEcHHHhhCCCchhHHHhccC-C---CCCHHHHHHHH
Q 005508 546 KSDCPELASCMIARGALIKPWIFTEIKEQRH-W---DITSGERLNIM 588 (693)
Q Consensus 546 l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~-~---d~s~~Erl~il 588 (693)
++ .||+.++-= -.+|.+.+..++... + -.|++|-...+
T Consensus 77 ~~--aGA~FivSP---~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~ 118 (196)
T PF01081_consen 77 IA--AGAQFIVSP---GFDPEVIEYAREYGIPYIPGVMTPTEIMQAL 118 (196)
T ss_dssp HH--HT-SEEEES---S--HHHHHHHHHHTSEEEEEESSHHHHHHHH
T ss_pred HH--cCCCEEECC---CCCHHHHHHHHHcCCcccCCcCCHHHHHHHH
Confidence 88 489988742 245666666555432 1 34777765543
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.75 Score=50.17 Aligned_cols=73 Identities=7% Similarity=0.041 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
..+.+|.+.+++.|+.-|-+..-...+...+ .|.++|+.++..+ .||||++-+--.++..++.++. +.||+..
T Consensus 441 igv~ELtrAcEalGAGEiLLNCiD~DGsn~G-yDieLv~lvkdsV--~IPVIASSGAG~P~HFeEvF~k-T~adAaL 513 (541)
T KOG0623|consen 441 IGVFELTRACEALGAGEILLNCIDCDGSNKG-YDIELVKLVKDSV--GIPVIASSGAGTPDHFEEVFEK-TNADAAL 513 (541)
T ss_pred cchhhHHHHHHHhCcchheeeeeccCCCCCC-cchhHHHHhhccc--CCceEecCCCCCcHHHHHHHHh-cCchhhh
Confidence 3578999999999999998876654444333 7899999999999 7999999999999999999987 8998764
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=89.15 E-value=5.8 Score=40.70 Aligned_cols=127 Identities=11% Similarity=0.229 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHH
Q 005508 406 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSL 485 (693)
Q Consensus 406 pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~l 485 (693)
.+.|.+-++.+. +.|+|+|-+- | ...+|. -|.+.+.+++++.. +.|+|. -|. + |...+..+-
T Consensus 71 ~~~M~~dI~~~~-~~GadG~VfG--~----L~~dg~-----iD~~~~~~Li~~a~---~~~~tF-HRA-f-D~~~d~~~a 132 (201)
T PF03932_consen 71 IEIMKEDIRMLR-ELGADGFVFG--A----LTEDGE-----IDEEALEELIEAAG---GMPVTF-HRA-F-DEVPDPEEA 132 (201)
T ss_dssp HHHHHHHHHHHH-HTT-SEEEE--------BETTSS-----B-HHHHHHHHHHHT---TSEEEE--GG-G-GGSSTHHHH
T ss_pred HHHHHHHHHHHH-HcCCCeeEEE--e----ECCCCC-----cCHHHHHHHHHhcC---CCeEEE-eCc-H-HHhCCHHHH
Confidence 456667777776 6899999874 3 222231 36778888888765 678888 443 2 223345666
Q ss_pred HHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 486 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 486 a~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
+..|.+.|++.|--||... +-....+.++++.+....+|-|+..||| +.+.+..+++. +|+..|=
T Consensus 133 l~~L~~lG~~rVLTSGg~~----~a~~g~~~L~~lv~~a~~~i~Im~GgGv-~~~nv~~l~~~-tg~~~~H 197 (201)
T PF03932_consen 133 LEQLIELGFDRVLTSGGAP----TALEGIENLKELVEQAKGRIEIMPGGGV-RAENVPELVEE-TGVREIH 197 (201)
T ss_dssp HHHHHHHT-SEEEESTTSS----STTTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHHH-HT-SEEE
T ss_pred HHHHHhcCCCEEECCCCCC----CHHHHHHHHHHHHHHcCCCcEEEecCCC-CHHHHHHHHHh-hCCeEEe
Confidence 7788888999997776542 1223466777776665447999999999 55667777775 7777664
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=4.7 Score=41.61 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=71.3
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
.+|..=+|. ++.+++..+++.|.+.|++.|-|.-+ .+.-.+.|+++++..+ --+||.|-|.+.+++..
T Consensus 15 ~~~iaV~r~---~~~~~a~~i~~al~~~Gi~~iEitl~-------~~~~~~~I~~l~~~~p--~~~IGAGTVl~~~~a~~ 82 (212)
T PRK05718 15 GPVVPVIVI---NKLEDAVPLAKALVAGGLPVLEVTLR-------TPAALEAIRLIAKEVP--EALIGAGTVLNPEQLAQ 82 (212)
T ss_pred CCEEEEEEc---CCHHHHHHHHHHHHHcCCCEEEEecC-------CccHHHHHHHHHHHCC--CCEEEEeeccCHHHHHH
Confidence 466666785 45688999999999999999999733 3445678999998885 36799999999999999
Q ss_pred HHhcCCCcCEEEEcHHHhhCCCchhHHHhc
Q 005508 545 HKSDCPELASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRgaL~nPwiF~eIke~ 574 (693)
+++ .||+.++.= -.+|.+.+..++.
T Consensus 83 a~~--aGA~FivsP---~~~~~vi~~a~~~ 107 (212)
T PRK05718 83 AIE--AGAQFIVSP---GLTPPLLKAAQEG 107 (212)
T ss_pred HHH--cCCCEEECC---CCCHHHHHHHHHc
Confidence 887 599988742 2455666655553
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.88 E-value=4.4 Score=45.50 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=37.5
Q ss_pred CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 510 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 510 g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
...+|+.|+.+++.. ++|||.- +|.+.+|+..+++ .|||+|.|.
T Consensus 238 ~~~tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~--~G~d~I~vs 281 (383)
T cd03332 238 PSLTWEDLAFLREWT--DLPIVLK-GILHPDDARRAVE--AGVDGVVVS 281 (383)
T ss_pred CCCCHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHH--CCCCEEEEc
Confidence 446899999999988 6898876 6789999999876 699999864
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.87 E-value=3.3 Score=42.45 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=69.5
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
.+|..=+|. .+.+++..++..+.+.|+..|-|.-++ +...+.|+.+++..+ .--+||.|-|.+.+++..
T Consensus 10 ~~~~~v~r~---~~~~~~~~~~~a~~~gGi~~iEvt~~~-------~~~~~~i~~l~~~~~-~~~~iGaGTV~~~~~~~~ 78 (206)
T PRK09140 10 LPLIAILRG---ITPDEALAHVGALIEAGFRAIEIPLNS-------PDPFDSIAALVKALG-DRALIGAGTVLSPEQVDR 78 (206)
T ss_pred CCEEEEEeC---CCHHHHHHHHHHHHHCCCCEEEEeCCC-------ccHHHHHHHHHHHcC-CCcEEeEEecCCHHHHHH
Confidence 466666786 356789999999999999999986443 334568889988874 224899999999999999
Q ss_pred HHhcCCCcCEEEEcHHHhhCCCchhHHH
Q 005508 545 HKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRgaL~nPwiF~eIk 572 (693)
+++ .|+|+++.+- .++.+.+...
T Consensus 79 a~~--aGA~fivsp~---~~~~v~~~~~ 101 (206)
T PRK09140 79 LAD--AGGRLIVTPN---TDPEVIRRAV 101 (206)
T ss_pred HHH--cCCCEEECCC---CCHHHHHHHH
Confidence 887 5999999852 3444444443
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=88.80 E-value=11 Score=40.62 Aligned_cols=148 Identities=11% Similarity=0.070 Sum_probs=89.9
Q ss_pred CCeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 394 EDLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 394 e~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
..|+.++|=+. +.+...+|. ++||+-|-+- |.--.+..+-+...++++-... .+++|-.=|.
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai-----~~GftSVMiD-----------gS~lp~eeNi~~T~~vv~~Ah~-~gv~VEaElG 139 (288)
T TIGR00167 77 GVPVALHLDHGASEEDCAQAV-----KAGFSSVMID-----------GSHEPFEENIELTKKVVERAHK-MGVSVEAELG 139 (288)
T ss_pred CCcEEEECCCCCCHHHHHHHH-----HcCCCEEEec-----------CCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEEe
Confidence 34566666433 333333322 2466666553 3333345566677777765543 2555544332
Q ss_pred -C-CCCCC---------hhHHHHHHHHHHHcCCCEEEEecccccCccCC-C--ccHHHHHHHHHHcCCCceEEEeCCCCC
Q 005508 473 -T-GYFEG---------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSK-L--ADWDYIYQCARKASDDLQVLGNGDIYS 538 (693)
Q Consensus 473 -~-G~~d~---------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg-~--Adw~~I~~i~~~~~~~IPVIgNGdI~s 538 (693)
+ |..+. -.+..+....+++.|+|+|.|.-+|..+.|.+ + .||+.+++|.+.+ ++|++.-|+=-.
T Consensus 140 ~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~ 217 (288)
T TIGR00167 140 TLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV--NLPLVLHGGSGI 217 (288)
T ss_pred eccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCC
Confidence 1 11111 11234445556778999999988887777853 3 5899999999998 799999998776
Q ss_pred H-HHHHHHHhcCCCcCEEEEcHHHh
Q 005508 539 Y-LDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 539 ~-eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
+ +++.+++. .|+.=|=|++.+.
T Consensus 218 ~~e~~~~ai~--~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 218 PDEEIKKAIS--LGVVKVNIDTELQ 240 (288)
T ss_pred CHHHHHHHHH--cCCeEEEcChHHH
Confidence 6 46666665 5777777776654
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=88.77 E-value=2.1 Score=45.67 Aligned_cols=61 Identities=8% Similarity=0.035 Sum_probs=41.7
Q ss_pred HHHcCCCEEEEecccccCccCCCccHH-HHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHH
Q 005508 489 IGTWGASAVTVHGRTRQQRYSKLADWD-YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 489 L~eaG~daItVHgRtr~q~ytg~Adw~-~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRg 560 (693)
+.++|+|.|-+-.-.. .++. ++..++...+ ++|+++.||| +.+.+.++.. +|+|+|++|.-
T Consensus 199 A~~~gaD~I~ld~~~p-------~~l~~~~~~~~~~~~-~i~i~AsGGI-~~~ni~~~~~--~Gvd~I~vsai 260 (272)
T cd01573 199 AAEAGADILQLDKFSP-------EELAELVPKLRSLAP-PVLLAAAGGI-NIENAAAYAA--AGADILVTSAP 260 (272)
T ss_pred HHHcCCCEEEECCCCH-------HHHHHHHHHHhccCC-CceEEEECCC-CHHHHHHHHH--cCCcEEEEChh
Confidence 4579999998853321 1222 3333433323 6999999999 8899988776 79999977743
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=88.71 E-value=10 Score=39.28 Aligned_cols=75 Identities=8% Similarity=-0.113 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHH-----------HHHHHHhcC
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL-----------DWNKHKSDC 549 (693)
Q Consensus 481 ~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~e-----------Da~~~l~~~ 549 (693)
....+++...+.|++.+.+.+ ..+..+++..+ .-.++..+||. ++ ...+++.
T Consensus 136 ~v~~~a~~a~~~g~dgvv~~~-------------~~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~-- 198 (230)
T PRK00230 136 QVLRLAKLAQEAGLDGVVCSA-------------QEAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIA-- 198 (230)
T ss_pred HHHHHHHHHHHcCCeEEEeCh-------------HHHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHH--
Confidence 344566777889999887642 12455555543 33456678885 33 4556664
Q ss_pred CCcCEEEEcHHHhhCCCchhHHH
Q 005508 550 PELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 550 ~gaDgVMIGRgaL~nPwiF~eIk 572 (693)
.|+|+|+|||++...++-...++
T Consensus 199 ~Gad~iVvGR~I~~a~dP~~~a~ 221 (230)
T PRK00230 199 AGSDYIVVGRPITQAADPAAAYE 221 (230)
T ss_pred cCCCEEEECCcccCCCCHHHHHH
Confidence 59999999999998877655543
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=88.71 E-value=2 Score=47.08 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEE-----------eCCCCCHHHHHHHH
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLG-----------NGDIYSYLDWNKHK 546 (693)
Q Consensus 478 ~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIg-----------NGdI~s~eDa~~~l 546 (693)
+.+++.+.++.+.+.|+..|.+.|..... +....-.+.+..+++..+ ++.+.+ +-|+.+.+.+.++.
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~-~~~~~~~~i~~~Ik~~~~-~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPD-LDGDFYLDILRAVKEEVP-GMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCC-CCHHHHHHHHHHHHHHCC-CceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34678888888999999999998653211 111111356777777754 577665 45777888777755
Q ss_pred hcCCCcCEEEEcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhh
Q 005508 547 SDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTC 621 (693)
Q Consensus 547 ~~~~gaDgVMIGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls~~~ 621 (693)
+ .|+|.+..+..-..+|.++.+|..+ ..+..++++.++...+.++.....--.|+..+...+.+.+.++.
T Consensus 149 e--AGl~~i~~~~~E~~~~~v~~~i~~~---~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr 218 (343)
T TIGR03551 149 E--AGLDSMPGTAAEILDDEVRKVICPD---KLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILR 218 (343)
T ss_pred H--hCcccccCcchhhcCHHHHHhcCCC---CCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHH
Confidence 4 6999887332234456666665321 24678999999988888876433223444444444444444433
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=88.66 E-value=8.1 Score=41.21 Aligned_cols=101 Identities=9% Similarity=-0.089 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHH
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 405 ~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~ 482 (693)
|.+.+.+-++.+. ..|+++|=++. ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++
T Consensus 20 D~~~~~~~i~~l~-~~Gv~Gi~~~G----------stGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~---~~t~~~ 85 (280)
T PLN02417 20 DLEAYDSLVNMQI-ENGAEGLIVGG----------TTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS---NSTREA 85 (280)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECc----------cCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC---ccHHHH
Confidence 6778888888776 46999998873 223223333444445555554444 4788875543 245789
Q ss_pred HHHHHHHHHcCCCEEEEecccccCccCCC---ccHHHHHHHHHH
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQRYSKL---ADWDYIYQCARK 523 (693)
Q Consensus 483 ~~la~~L~eaG~daItVHgRtr~q~ytg~---Adw~~I~~i~~~ 523 (693)
.++++.++++|+|+|.+..-. |..+ .-.+|+..+.+.
T Consensus 86 i~~a~~a~~~Gadav~~~~P~----y~~~~~~~i~~~f~~va~~ 125 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPY----YGKTSQEGLIKHFETVLDM 125 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCc----cCCCCHHHHHHHHHHHHhh
Confidence 999999999999999987432 2222 224555666553
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=88.63 E-value=13 Score=41.04 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=60.2
Q ss_pred cccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCC---EEEEecccccCccCCCccHHHHH
Q 005508 442 GSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGAS---AVTVHGRTRQQRYSKLADWDYIY 518 (693)
Q Consensus 442 GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~d---aItVHgRtr~q~ytg~Adw~~I~ 518 (693)
||.-+.+..+++.+-+ .++||.++..+. +..+....+..+.+.|.. .+.+|.-+...-.....|+..|.
T Consensus 116 aS~~~~n~pLL~~~A~-----~gkPvilStGma---tl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~ 187 (329)
T TIGR03569 116 PSGEITNAPLLKKIAR-----FGKPVILSTGMA---TLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMD 187 (329)
T ss_pred CcccccCHHHHHHHHh-----cCCcEEEECCCC---CHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHH
Confidence 5666778777776543 489999987774 457778888888899985 66778654222122346899999
Q ss_pred HHHHHcCCCceEEEeCC
Q 005508 519 QCARKASDDLQVLGNGD 535 (693)
Q Consensus 519 ~i~~~~~~~IPVIgNGd 535 (693)
.+++.+ ++||...+=
T Consensus 188 ~Lk~~f--~~pVG~SdH 202 (329)
T TIGR03569 188 TLKEAF--DLPVGYSDH 202 (329)
T ss_pred HHHHHh--CCCEEECCC
Confidence 999988 689987643
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.58 E-value=5.6 Score=44.04 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCccCC---C----ccHHHHHHHHHHcCCCceEEEeCCCCCHHHH
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRYSK---L----ADWDYIYQCARKASDDLQVLGNGDIYSYLDW 542 (693)
Q Consensus 482 ~~~la~~L~eaG~daItVHgRtr~q~ytg---~----Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa 542 (693)
..+..+.+++.|+|+|.|.-.|..+.|.+ + .||+.+++|++.++ ++|++.-|+=-.++|.
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~ 241 (347)
T PRK09196 175 PEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQEL 241 (347)
T ss_pred HHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHH
Confidence 45555666789999998877776667754 3 68999999999984 5999998877554443
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.5 Score=47.27 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=62.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecccccCccCCC-ccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH---HHhcCCCcC
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL-ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK---HKSDCPELA 553 (693)
Q Consensus 478 ~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~-Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~---~l~~~~gaD 553 (693)
+.+.+.++++.+.+.|+++|.+-|-|.+..+-.. -..+.+..+++.+..++|||+.-+-.+.+++.+ +.++ .|+|
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~-~Gad 101 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEK-LGAD 101 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHh-cCCC
Confidence 3456788999999999999999988866543222 234566777777765698886444444444433 2334 6999
Q ss_pred EEEEcHHHhhCCC
Q 005508 554 SCMIARGALIKPW 566 (693)
Q Consensus 554 gVMIGRgaL~nPw 566 (693)
++|+--..+.+|.
T Consensus 102 ~il~v~PyY~k~~ 114 (299)
T COG0329 102 GILVVPPYYNKPS 114 (299)
T ss_pred EEEEeCCCCcCCC
Confidence 9999999999886
|
|
| >KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.2 Score=57.18 Aligned_cols=63 Identities=29% Similarity=0.502 Sum_probs=47.9
Q ss_pred hhhhhh-ccccCChhhhccCCCCCCCCCCCCCCCCChhhhhhcCCCCCCCCCCCcCcccccCCCCCcccccC
Q 005508 93 RQQEKK-SASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGT 163 (693)
Q Consensus 93 r~~~~~-~~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~~yl~~K~~di~~~Cp~f~~~G~Cp~G~~CRF~~s 163 (693)
|+-|.+ ..---|+.|-+| .|.-||.|.|.|.+=|..-+-...-+..|.-- |+|+. .-|-|+.+
T Consensus 227 RDPRkyhYs~tpCPefrkG----~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R-rvCfFAH~ 290 (528)
T KOG1595|consen 227 RDPRKYHYSSTPCPEFRKG----SCERGDSCEYAHGVFECWLHPARYRTRKCKDG---GYCPR-RVCFFAHS 290 (528)
T ss_pred CCcccccccCccCcccccC----CCCCCCccccccceehhhcCHHHhccccccCC---CCCcc-ceEeeecC
Confidence 443433 556789999996 69999999999999887665444456678644 99999 88999744
|
|
| >PRK14567 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.42 E-value=2.2 Score=45.20 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=39.0
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 527 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
+++|+.-|.| +++.+.+++.. ..+||+.||++.| +|.-|.+|-+
T Consensus 202 ~v~IlYGGSV-~~~N~~~l~~~-~diDG~LVGgasL-~~~~F~~Ii~ 245 (253)
T PRK14567 202 NIKIVYGGSL-KAENAKDILSL-PDVDGGLIGGASL-KAAEFNEIIN 245 (253)
T ss_pred cceEEEcCcC-CHHHHHHHHcC-CCCCEEEeehhhh-cHHHHHHHHH
Confidence 5899999999 99999998876 8899999999998 8888888754
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=88.37 E-value=6.5 Score=45.64 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 407 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 407 e~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
+.+.+-|+.+. ..|+|.||||++...+ .++.+..+|+++++.+++||+|-..
T Consensus 165 ~~i~~~A~~~~-~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT~ 216 (499)
T TIGR00284 165 DGIEGLAARME-RDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADTP 216 (499)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeCC
Confidence 44444454444 4699999999765432 2446889999998887899999553
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=88.18 E-value=40 Score=36.06 Aligned_cols=149 Identities=11% Similarity=-0.036 Sum_probs=93.4
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe
Q 005508 392 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 392 ~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi 471 (693)
....|+++++.. +..+..+.++.++ .+|+|+|-+ --|.-. .-..+-+.+-.+.|.+++++||.+--
T Consensus 67 ~~~~pvi~gv~~-~t~~~i~~a~~a~-~~Gad~v~~--~pP~y~----------~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 67 AGRVPVLAGAGY-GTATAIAYAQAAE-KAGADGILL--LPPYLT----------EAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred CCCCCEEEecCC-CHHHHHHHHHHHH-HhCCCEEEE--CCCCCC----------CCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 345688999976 7788888888887 689999987 234311 12456777888888888899999988
Q ss_pred cCCCCCChhHHHHHHHHHHH-c-CCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHH-HHHHHhc
Q 005508 472 RTGYFEGKNRIDSLIADIGT-W-GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD-WNKHKSD 548 (693)
Q Consensus 472 R~G~~d~~~~~~~la~~L~e-a-G~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eD-a~~~l~~ 548 (693)
++|..-. .+++.+|.+ . .+-+| .++ ..|+..+.++.+..+.++ .+.+|. .+.+. +...+.
T Consensus 133 ~~g~~l~----~~~l~~L~~~~pnivgi---------Kds-~~d~~~~~~~~~~~~~~~-~v~~G~-~~~d~~~~~~l~- 195 (289)
T cd00951 133 RANAVLT----ADSLARLAERCPNLVGF---------KDG-VGDIELMRRIVAKLGDRL-LYLGGL-PTAEVFALAYLA- 195 (289)
T ss_pred CCCCCCC----HHHHHHHHhcCCCEEEE---------EeC-CCCHHHHHHHHHhcCCCe-EEEeCC-CcchHhHHHHHH-
Confidence 7775322 344445543 2 22222 122 247888888877664334 444553 11222 234444
Q ss_pred CCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 549 CPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 549 ~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
.|++|++.|-+.+ -|.++.++-+
T Consensus 196 -~Ga~G~is~~~n~-~P~~~~~l~~ 218 (289)
T cd00951 196 -MGVPTYSSAVFNF-VPEIALAFYA 218 (289)
T ss_pred -CCCCEEEechhhh-hHHHHHHHHH
Confidence 5899998776554 4777776654
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=88.17 E-value=15 Score=39.61 Aligned_cols=115 Identities=12% Similarity=0.077 Sum_probs=74.4
Q ss_pred ccCChHHHHHHHHHhccccccCEEEEec-CC-CCCC----------hhHHHHHHHHHHHcCCCEEEEecccccCccCC--
Q 005508 445 LLTKPMRMKGIIEATSGTVDKPITIKVR-TG-YFEG----------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSK-- 510 (693)
Q Consensus 445 Ll~rp~~l~eIV~av~~~v~iPVtVKiR-~G-~~d~----------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg-- 510 (693)
+.++-+...++++-.+. .++.|-.=+- +| ..+. -.+..+..+.+++.|+|+|.|.-+|..+.|.+
T Consensus 109 ~eeNi~~T~~vv~~ah~-~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~ 187 (287)
T PF01116_consen 109 FEENIAITREVVEYAHA-YGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGK 187 (287)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSS
T ss_pred HHHHHHHHHHHHHhhhh-hCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCC
Confidence 34455666666665543 3555555442 22 1110 02345556667889999999988888888877
Q ss_pred C--ccHHHHHHHHHHcCCCceEEEeCCCCCHH-HHHHHHhcCCCcCEEEEcHHHhh
Q 005508 511 L--ADWDYIYQCARKASDDLQVLGNGDIYSYL-DWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 511 ~--Adw~~I~~i~~~~~~~IPVIgNGdI~s~e-Da~~~l~~~~gaDgVMIGRgaL~ 563 (693)
. .|++.+++|++.++ ++|++.-|+=-.++ ++.+++. .|+.=|=|++.+..
T Consensus 188 ~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~--~Gi~KiNi~T~~~~ 240 (287)
T PF01116_consen 188 KPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIK--NGISKINIGTELRR 240 (287)
T ss_dssp STC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHH--TTEEEEEESHHHHH
T ss_pred CcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHH--cCceEEEEehHHHH
Confidence 4 47899999999984 49999999877665 6667665 57877778776653
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=88.14 E-value=16 Score=37.68 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=85.8
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC
Q 005508 394 EDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 473 (693)
Q Consensus 394 e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~ 473 (693)
+.++.+|+.|.+.+.+.+.|+.+....+--.|.| |... .| .+.++.+++. ++++.+-.
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~-----~g----------l~ai~~L~~~-gi~v~~T~-- 108 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE-----DG----------LKAIKKLSEE-GIKTNVTA-- 108 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH-----hH----------HHHHHHHHHc-CCceeeEE--
Confidence 4578999999999999999998874435445555 3221 11 2334444332 55555522
Q ss_pred CCCCChhHHHHHHHHHHHcCCCEEEEe-cccccCccCCCccHHHHHHHHHHcCC-Cc-eEEEeCCCCCHHHHHHHHhcCC
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVH-GRTRQQRYSKLADWDYIYQCARKASD-DL-QVLGNGDIYSYLDWNKHKSDCP 550 (693)
Q Consensus 474 G~~d~~~~~~~la~~L~eaG~daItVH-gRtr~q~ytg~Adw~~I~~i~~~~~~-~I-PVIgNGdI~s~eDa~~~l~~~~ 550 (693)
... ..=+....++|++.|+.+ ||....+. .-+..+.++.+.+.. ++ .=|...++.++.++.+++. .
T Consensus 109 -V~s-----~~Qa~~Aa~AGA~yvsP~vgR~~~~g~---dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~--~ 177 (211)
T cd00956 109 -IFS-----AAQALLAAKAGATYVSPFVGRIDDLGG---DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAAL--A 177 (211)
T ss_pred -ecC-----HHHHHHHHHcCCCEEEEecChHhhcCC---CHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHH--c
Confidence 111 223344567899998875 55544333 234555555443310 22 2445678999999999776 6
Q ss_pred CcCEEEEcHHHhhCCCchhHHHh
Q 005508 551 ELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 551 gaDgVMIGRgaL~nPwiF~eIke 573 (693)
|||.|-+. |.+|.++..
T Consensus 178 Gad~vTv~------~~vl~~l~~ 194 (211)
T cd00956 178 GADAITLP------PDVLEQLLK 194 (211)
T ss_pred CCCEEEeC------HHHHHHHhc
Confidence 99999987 666776644
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=88.12 E-value=3.2 Score=46.44 Aligned_cols=126 Identities=9% Similarity=0.084 Sum_probs=79.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 478 ~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
+.+++.+.|+.+.+.|+..|++..-.+.+ ...+..++++.++.+.+. ..+.|..+-|+.+.+.+.++.+ .|+|.+.
T Consensus 117 s~EeIl~~a~~~~~~G~~~~~ivts~rg~-~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~Lke--AGld~~~ 193 (379)
T PLN02389 117 SKDDVLEAAKRAKEAGSTRFCMGAAWRDT-VGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKE--AGLTAYN 193 (379)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecccCC-CCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHH--cCCCEEE
Confidence 45678888998899999998774221111 122234555544443321 1477888888999999988654 6999998
Q ss_pred EcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Q 005508 557 IARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHF 612 (693)
Q Consensus 557 IGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrf 612 (693)
+. +=..|.+|.++.. ..+..+|++.++...+.++.-...--.|+..++..
T Consensus 194 ~~--LeTs~~~y~~i~~----~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~ed 243 (379)
T PLN02389 194 HN--LDTSREYYPNVIT----TRSYDDRLETLEAVREAGISVCSGGIIGLGEAEED 243 (379)
T ss_pred ee--ecCChHHhCCcCC----CCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHH
Confidence 83 1112667766642 33778999999999888775433223344444433
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=88.12 E-value=41 Score=36.09 Aligned_cols=147 Identities=9% Similarity=-0.037 Sum_probs=89.5
Q ss_pred CCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEe
Q 005508 393 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKV 471 (693)
Q Consensus 393 ~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKi 471 (693)
...|+++++.+.+.++..+.|+.+. ++|+|+|=+- =|.-. -...+-+.+-.+.|.+++ ++||.+--
T Consensus 69 ~~~pvi~gv~~~~t~~~i~la~~a~-~~Gad~v~v~--~P~y~----------~~~~~~i~~yf~~v~~~~~~lpv~lYn 135 (290)
T TIGR00683 69 DQIALIAQVGSVNLKEAVELGKYAT-ELGYDCLSAV--TPFYY----------KFSFPEIKHYYDTIIAETGGLNMIVYS 135 (290)
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHH-HhCCCEEEEe--CCcCC----------CCCHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 4468899999999999999999887 6899999983 24321 113456666677775555 78988764
Q ss_pred ---cCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhc
Q 005508 472 ---RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD 548 (693)
Q Consensus 472 ---R~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~ 548 (693)
++|..-. .+++.+|.+.+ ..+-|- ++ ..|+..+.++.+..+ ++-| .+|.= +.+...+.
T Consensus 136 ~P~~tg~~l~----~~~i~~L~~~p-nv~giK-------~s-~~d~~~~~~~~~~~~-~~~v-~~G~d---~~~~~~l~- 196 (290)
T TIGR00683 136 IPFLTGVNMG----IEQFGELYKNP-KVLGVK-------FT-AGDFYLLERLKKAYP-NHLI-WAGFD---EMMLPAAS- 196 (290)
T ss_pred CccccccCcC----HHHHHHHhcCC-CEEEEE-------eC-CCCHHHHHHHHHhCC-CCEE-EECch---HHHHHHHH-
Confidence 3343222 34444444322 112121 11 236777888877665 4544 45541 22334444
Q ss_pred CCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 549 CPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 549 ~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
.|++|++.|-+.+. |.++.++-+
T Consensus 197 -~G~~G~i~~~~n~~-P~~~~~i~~ 219 (290)
T TIGR00683 197 -LGVDGAIGSTFNVN-GVRARQIFE 219 (290)
T ss_pred -CCCCEEEecHHHhC-HHHHHHHHH
Confidence 58999998765543 766666654
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=87.93 E-value=13 Score=37.23 Aligned_cols=123 Identities=14% Similarity=0.022 Sum_probs=72.1
Q ss_pred EecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-c--cCEEEEecCCCC
Q 005508 400 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-D--KPITIKVRTGYF 476 (693)
Q Consensus 400 QL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~--iPVtVKiR~G~~ 476 (693)
-|=..+++...+.++.+. .|++.|++.. |. . ...-.++|+.+++.. + +.+.+|+- +.
T Consensus 5 alD~~~~~~a~~~~~~l~--~~v~~iev~~--~l--~------------~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~- 64 (206)
T TIGR03128 5 ALDLLDIEEALELAEKVA--DYVDIIEIGT--PL--I------------KNEGIEAVKEMKEAFPDRKVLADLKTM-DA- 64 (206)
T ss_pred EecCCCHHHHHHHHHHcc--cCeeEEEeCC--HH--H------------HHhCHHHHHHHHHHCCCCEEEEEEeec-cc-
Confidence 334667888889998883 5899999942 11 1 111234566665543 3 33344443 11
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecccccCccCCCcc-HHHHHHHHHHcCCCceEEEe-CCCCC-HHHHHHHHhcCCCcC
Q 005508 477 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLAD-WDYIYQCARKASDDLQVLGN-GDIYS-YLDWNKHKSDCPELA 553 (693)
Q Consensus 477 d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Ad-w~~I~~i~~~~~~~IPVIgN-GdI~s-~eDa~~~l~~~~gaD 553 (693)
.+ ..++.+.++|+++|++|+-+. ... -+.+..+++ . +++++.. =+..+ .+++..+++ .|+|
T Consensus 65 ---~~--~~~~~~~~~Gad~i~vh~~~~------~~~~~~~i~~~~~-~--g~~~~~~~~~~~t~~~~~~~~~~--~g~d 128 (206)
T TIGR03128 65 ---GE--YEAEQAFAAGADIVTVLGVAD------DATIKGAVKAAKK-H--GKEVQVDLINVKDKVKRAKELKE--LGAD 128 (206)
T ss_pred ---hH--HHHHHHHHcCCCEEEEeccCC------HHHHHHHHHHHHH-c--CCEEEEEecCCCChHHHHHHHHH--cCCC
Confidence 11 247788899999999996531 112 244555554 3 5787753 23333 467766654 4899
Q ss_pred EEEEc
Q 005508 554 SCMIA 558 (693)
Q Consensus 554 gVMIG 558 (693)
.|.+.
T Consensus 129 ~v~~~ 133 (206)
T TIGR03128 129 YIGVH 133 (206)
T ss_pred EEEEc
Confidence 98774
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.9 Score=45.92 Aligned_cols=86 Identities=17% Similarity=0.051 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecccccCcc-CCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH---hcCCCcCE
Q 005508 479 KNRIDSLIADIGTWGASAVTVHGRTRQQRY-SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK---SDCPELAS 554 (693)
Q Consensus 479 ~~~~~~la~~L~eaG~daItVHgRtr~q~y-tg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l---~~~~gaDg 554 (693)
.....++++.+.+.|+++|.+-|-+.+... +..-....++.+.+.+..++|||+.=+-.+.+++.++. +. .|||+
T Consensus 21 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~-~Gada 99 (280)
T PLN02417 21 LEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFA-VGMHA 99 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHH-cCCCE
Confidence 456888999999999999999988765443 22223445666666665568988544444555554432 34 69999
Q ss_pred EEEcHHHhhCC
Q 005508 555 CMIARGALIKP 565 (693)
Q Consensus 555 VMIGRgaL~nP 565 (693)
||+.-..+..|
T Consensus 100 v~~~~P~y~~~ 110 (280)
T PLN02417 100 ALHINPYYGKT 110 (280)
T ss_pred EEEcCCccCCC
Confidence 99987776665
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.71 E-value=1.8 Score=46.23 Aligned_cols=87 Identities=9% Similarity=-0.008 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHH-cCCCEEEEecccccCcc-CCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHH---HhcCCCcC
Q 005508 479 KNRIDSLIADIGT-WGASAVTVHGRTRQQRY-SKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH---KSDCPELA 553 (693)
Q Consensus 479 ~~~~~~la~~L~e-aG~daItVHgRtr~q~y-tg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~---l~~~~gaD 553 (693)
......+++.+.+ .|++.|.+-|-+.+... +..-....++.+++.+..++|||+.=+-.+.+++.++ .++ .|||
T Consensus 23 ~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~-~Gad 101 (293)
T PRK04147 23 EQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATE-LGYD 101 (293)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHH-cCCC
Confidence 4567889999999 99999999987765432 3323455667777777657898865555566666443 334 6999
Q ss_pred EEEEcHHHhhCCC
Q 005508 554 SCMIARGALIKPW 566 (693)
Q Consensus 554 gVMIGRgaL~nPw 566 (693)
+||+--+.+.+|.
T Consensus 102 ~v~v~~P~y~~~~ 114 (293)
T PRK04147 102 AISAVTPFYYPFS 114 (293)
T ss_pred EEEEeCCcCCCCC
Confidence 9999988887773
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=87.68 E-value=6.6 Score=43.15 Aligned_cols=150 Identities=14% Similarity=0.160 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEc-------CCCCCcccccCCccccccCChH----HHHHHHHHhcc-ccccCEEEEecC
Q 005508 406 PDTLARTVELIDQQCTVDFIDIN-------MGCPIDIVVNKGAGSCLLTKPM----RMKGIIEATSG-TVDKPITIKVRT 473 (693)
Q Consensus 406 pe~~~~AA~~~~~~aG~D~IDLN-------~GCP~~~v~k~G~GsaLl~rp~----~l~eIV~av~~-~v~iPVtVKiR~ 473 (693)
.+...++.+.+. ..||.+|.+- -|-|.+.+.+.-...++++..- -+...++.++. ..+.||.|=+..
T Consensus 65 ~~~~~~~~~~~~-~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i~vsi~~ 143 (335)
T TIGR01036 65 FDKDGEAIDALG-AMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARYKGPIGINIGK 143 (335)
T ss_pred cCCCHHHHHHHH-hcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccCCCcEEEEEeC
Confidence 334445555555 4699999994 3445444443221233444322 23444444433 235666664422
Q ss_pred C----CCCChhHHHHHHHHHHHcCCCEEEEe--ccc-ccCccC--CCccHHHHHHHHHHcC-----CCceEEE--eCCCC
Q 005508 474 G----YFEGKNRIDSLIADIGTWGASAVTVH--GRT-RQQRYS--KLADWDYIYQCARKAS-----DDLQVLG--NGDIY 537 (693)
Q Consensus 474 G----~~d~~~~~~~la~~L~eaG~daItVH--gRt-r~q~yt--g~Adw~~I~~i~~~~~-----~~IPVIg--NGdI~ 537 (693)
. .....++..++++.+.+ .+|+|.|- .-. ...+.. ...-.+.++.|++.+. .++||+. .-++.
T Consensus 144 ~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~ 222 (335)
T TIGR01036 144 NKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLT 222 (335)
T ss_pred CCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCC
Confidence 1 01123456666666655 39999883 111 111110 1112344555655541 0278773 44554
Q ss_pred --CHHHHHHHHhcCCCcCEEEEc
Q 005508 538 --SYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 538 --s~eDa~~~l~~~~gaDgVMIG 558 (693)
+..++.+.+.+ .|||||.+.
T Consensus 223 ~~~i~~ia~~~~~-~GadGi~l~ 244 (335)
T TIGR01036 223 ESDLEDIADSLVE-LGIDGVIAT 244 (335)
T ss_pred HHHHHHHHHHHHH-hCCcEEEEE
Confidence 35555565555 799999653
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=87.33 E-value=2.2 Score=45.31 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 403 G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
..+.+...+-|+... +.|+|.||||++-+ ....++.+..+|+.+++.+++||+|-..
T Consensus 21 ~~d~~~i~~~A~~~~-~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~~~~plsIDT~ 77 (261)
T PRK07535 21 AKDAAFIQKLALKQA-EAGADYLDVNAGTA------------VEEEPETMEWLVETVQEVVDVPLCIDSP 77 (261)
T ss_pred cCCHHHHHHHHHHHH-HCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 345666666666655 57999999998722 1345778999999998888999988443
|
|
| >PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 | Back alignment and domain information |
|---|
Probab=87.33 E-value=4.1 Score=41.69 Aligned_cols=90 Identities=14% Similarity=0.234 Sum_probs=64.9
Q ss_pred EEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCC----
Q 005508 399 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTG---- 474 (693)
Q Consensus 399 vQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G---- 474 (693)
|.|.+.+.+++.+.++.+. ..|+|.|||-+-+= .. .....+.+.+..++..+++||.+=+|.-
T Consensus 2 v~l~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l---------~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG 68 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAE-SSGADAVELRLDYL---------EN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGG 68 (224)
T ss_dssp EEE--SSHHHHHHHHHHHH-HTTTSEEEEEGGGS---------TT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTS
T ss_pred EeeCCCCHHHHHHHHHHHH-hcCCCEEEEEeccc---------cc---cChHHHHHHHHHHHHhCCCCEEEEecccccCC
Confidence 6788999999988888776 34899999975221 11 4667788888888887889988888862
Q ss_pred -CCCChhHHHHHHHHHHHcCCCEEEEec
Q 005508 475 -YFEGKNRIDSLIADIGTWGASAVTVHG 501 (693)
Q Consensus 475 -~~d~~~~~~~la~~L~eaG~daItVHg 501 (693)
+..+.....++...+.+.|+++|.|--
T Consensus 69 ~~~~~~~~~~~ll~~~~~~~~d~iDiE~ 96 (224)
T PF01487_consen 69 RFQGSEEEYLELLERAIRLGPDYIDIEL 96 (224)
T ss_dssp SBSS-HHHHHHHHHHHHHHTSSEEEEEG
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 222346788899999999999999953
|
2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A .... |
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=87.28 E-value=15 Score=38.96 Aligned_cols=139 Identities=9% Similarity=-0.006 Sum_probs=76.2
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHH
Q 005508 411 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 490 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ 490 (693)
+.++.+. ++|++.|-+++= -.+.+.+.-.+ -.+.+...+.++.+++. +++|.+-+=.|..++..+..+++..+.
T Consensus 124 e~l~~Lk-~aG~~~v~i~~E-~~~~~~~~i~~---~~s~~~~~~ai~~l~~~-Gi~v~~~~i~Gl~et~~d~~~~~~~l~ 197 (296)
T TIGR00433 124 EQAKRLK-DAGLDYYNHNLD-TSQEFYSNIIS---THTYDDRVDTLENAKKA-GLKVCSGGIFGLGETVEDRIGLALALA 197 (296)
T ss_pred HHHHHHH-HcCCCEEEEccc-CCHHHHhhccC---CCCHHHHHHHHHHHHHc-CCEEEEeEEEeCCCCHHHHHHHHHHHH
Confidence 3344565 689998777643 12222221111 12445555555555443 677666554566667788889999999
Q ss_pred HcCCCEEEEeccc-----ccCccCCCccHHHHHHHH---HHcCCCceEEEeCCC-CCHHHHHH--HHhcCCCcCEEEEc
Q 005508 491 TWGASAVTVHGRT-----RQQRYSKLADWDYIYQCA---RKASDDLQVLGNGDI-YSYLDWNK--HKSDCPELASCMIA 558 (693)
Q Consensus 491 eaG~daItVHgRt-----r~q~ytg~Adw~~I~~i~---~~~~~~IPVIgNGdI-~s~eDa~~--~l~~~~gaDgVMIG 558 (693)
+.|++.+.+|.-+ .-..+..+...+++..++ ...| ...|...|+= ....+... .+. .||+++|+|
T Consensus 198 ~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp-~~~i~~~~~~~~~~~~~~~~~~l~--~G~n~i~~g 273 (296)
T TIGR00433 198 NLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMP-KAEIRLAGGREVNMRELQQAMCFM--AGANSIFVG 273 (296)
T ss_pred hCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCC-cceEEEeCCcchhhhhhHHHHHHH--hcCceEEEc
Confidence 9999998876543 222333333334444433 3444 2223333333 23334432 344 689999986
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=87.25 E-value=13 Score=39.77 Aligned_cols=104 Identities=8% Similarity=0.061 Sum_probs=63.7
Q ss_pred hHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcC--CCEEEEecccc--cC---ccCCCc--cHHHHHH
Q 005508 449 PMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG--ASAVTVHGRTR--QQ---RYSKLA--DWDYIYQ 519 (693)
Q Consensus 449 p~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG--~daItVHgRtr--~q---~ytg~A--dw~~I~~ 519 (693)
.+...+.++......+.||.|=+.. .+.++..++++.+++++ +++|.|--... .. .|-... -++.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g---~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~ 151 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG---SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKA 151 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec---CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHH
Confidence 3444444444444557798887753 24567889999999874 99999853322 11 111111 2566777
Q ss_pred HHHHcCCCceEEEeC--CCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 520 CARKASDDLQVLGNG--DIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 520 i~~~~~~~IPVIgNG--dI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+++.+ ++||+.=- ++.+..++.+.+++ .|+|++.+.
T Consensus 152 vr~~~--~~pv~vKi~~~~~~~~~~a~~l~~-~G~d~i~v~ 189 (300)
T TIGR01037 152 VKDKT--DVPVFAKLSPNVTDITEIAKAAEE-AGADGLTLI 189 (300)
T ss_pred HHHhc--CCCEEEECCCChhhHHHHHHHHHH-cCCCEEEEE
Confidence 77776 57877543 34444455555666 799999873
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=87.21 E-value=9.2 Score=42.09 Aligned_cols=148 Identities=10% Similarity=0.071 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhhCCCcEEEEc-------CCCCCcccccCCccccccCChHH----HHHHHHHhccc-cccCEEEEecCC-
Q 005508 408 TLARTVELIDQQCTVDFIDIN-------MGCPIDIVVNKGAGSCLLTKPMR----MKGIIEATSGT-VDKPITIKVRTG- 474 (693)
Q Consensus 408 ~~~~AA~~~~~~aG~D~IDLN-------~GCP~~~v~k~G~GsaLl~rp~~----l~eIV~av~~~-v~iPVtVKiR~G- 474 (693)
...+..+.+. .+|+.+|.+- -|-|.+.+..-....++++...+ +..+++.+++. .++||.|=|--.
T Consensus 70 ~~~~~~~~~~-~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~ 148 (344)
T PRK05286 70 KNGEAIDALG-ALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNK 148 (344)
T ss_pred CChHHHHHHH-HcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 3445555555 5799999984 34455554432211234443222 34444444333 578888866321
Q ss_pred C---CCChhHHHHHHHHHHHcCCCEEEEecccc---cCc--cCCCccHHHHHHHHHHcCC---CceEEE--eCCCC--CH
Q 005508 475 Y---FEGKNRIDSLIADIGTWGASAVTVHGRTR---QQR--YSKLADWDYIYQCARKASD---DLQVLG--NGDIY--SY 539 (693)
Q Consensus 475 ~---~d~~~~~~~la~~L~eaG~daItVHgRtr---~q~--ytg~Adw~~I~~i~~~~~~---~IPVIg--NGdI~--s~ 539 (693)
. .....++.++++.+.+ ++|+|.+---.. ..+ ..+..-.+.++.+++.+.. ++||+. +-++. ..
T Consensus 149 ~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~ 227 (344)
T PRK05286 149 DTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEEL 227 (344)
T ss_pred CCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHH
Confidence 0 1133566677777755 599998742111 111 0111123566777777630 178773 33443 24
Q ss_pred HHHHHHHhcCCCcCEEEEc
Q 005508 540 LDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 540 eDa~~~l~~~~gaDgVMIG 558 (693)
.++.+.+.+ .|||+|.+-
T Consensus 228 ~~ia~~l~~-~Gadgi~~~ 245 (344)
T PRK05286 228 DDIADLALE-HGIDGVIAT 245 (344)
T ss_pred HHHHHHHHH-hCCcEEEEe
Confidence 445555665 799999654
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=87.20 E-value=12 Score=37.59 Aligned_cols=124 Identities=18% Similarity=0.246 Sum_probs=68.0
Q ss_pred EEecCCC-HHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCC
Q 005508 399 VQICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYF 476 (693)
Q Consensus 399 vQL~G~~-pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~ 476 (693)
++|||-. +++...|+ ..|+|+|-+-+--+.+. .-.++.+.+|.+.+...+ .++|+|.
T Consensus 1 vKiCGi~~~ed~~~a~-----~~Gvd~ig~i~~~~s~R----------~v~~~~a~~l~~~~~~~~~~V~v~vn------ 59 (203)
T cd00405 1 VKICGITTLEDALAAA-----EAGADAIGFIFAPKSPR----------YVSPEQAREIVAALPPFVKRVGVFVN------ 59 (203)
T ss_pred CEECCCCCHHHHHHHH-----HcCCCEEEEecCCCCCC----------CCCHHHHHHHHHhCCCCCcEEEEEeC------
Confidence 4678855 44433332 46899999965322111 124566667666665422 4455441
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEE
Q 005508 477 EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 477 d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVM 556 (693)
++ ..++...+.+.|++.|++|+-. +-+++..+++.+ ..++|-.=++.+..+.........++|.++
T Consensus 60 ~~---~~~i~~ia~~~~~d~Vqlhg~e---------~~~~~~~l~~~~--~~~~i~~i~~~~~~~~~~~~~~~~~aD~il 125 (203)
T cd00405 60 ED---LEEILEIAEELGLDVVQLHGDE---------SPEYCAQLRARL--GLPVIKAIRVKDEEDLEKAAAYAGEVDAIL 125 (203)
T ss_pred CC---HHHHHHHHHhcCCCEEEECCCC---------CHHHHHHHHhhc--CCcEEEEEecCChhhHHHhhhccccCCEEE
Confidence 22 3455566778899999999642 235677777765 244442112334444332122125889986
Q ss_pred E
Q 005508 557 I 557 (693)
Q Consensus 557 I 557 (693)
+
T Consensus 126 ~ 126 (203)
T cd00405 126 L 126 (203)
T ss_pred E
Confidence 5
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=4.8 Score=40.50 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=61.9
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~ 544 (693)
.||..=+|. .+.+++..+++.+.+.|+..|-|--++ +...+.+..+++.. .+-.++.|-+.+.+++..
T Consensus 12 ~~~~~v~r~---~~~~~~~~~~~~~~~~Gv~~vqlr~k~-------~~~~e~~~~~~~~~--~~~~~g~gtvl~~d~~~~ 79 (187)
T PRK07455 12 HRAIAVIRA---PDLELGLQMAEAVAAGGMRLIEITWNS-------DQPAELISQLREKL--PECIIGTGTILTLEDLEE 79 (187)
T ss_pred CCEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCC-------CCHHHHHHHHHHhC--CCcEEeEEEEEcHHHHHH
Confidence 356665776 356789999999999999999885443 23456777777766 355688999999999998
Q ss_pred HHhcCCCcCEEEEc
Q 005508 545 HKSDCPELASCMIA 558 (693)
Q Consensus 545 ~l~~~~gaDgVMIG 558 (693)
+++ .|||+|+++
T Consensus 80 A~~--~gAdgv~~p 91 (187)
T PRK07455 80 AIA--AGAQFCFTP 91 (187)
T ss_pred HHH--cCCCEEECC
Confidence 887 599999876
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=87.15 E-value=2 Score=46.58 Aligned_cols=86 Identities=9% Similarity=0.075 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecccccCccCCC-ccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH---hcCCCcCE
Q 005508 479 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL-ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK---SDCPELAS 554 (693)
Q Consensus 479 ~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~-Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l---~~~~gaDg 554 (693)
.+....+++.+.+.||++|.+-|-|.+..+-.. -.-+.++.+++.+..++|||+.=+-.+.+++.++. ++ .|||+
T Consensus 28 ~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~-~Gad~ 106 (309)
T cd00952 28 LDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLD-LGADG 106 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHH-hCCCE
Confidence 456788999999999999999888766443222 23445666676666579988555544555554433 34 69999
Q ss_pred EEEcHHHhhCC
Q 005508 555 CMIARGALIKP 565 (693)
Q Consensus 555 VMIGRgaL~nP 565 (693)
|||--..+..|
T Consensus 107 vlv~~P~y~~~ 117 (309)
T cd00952 107 TMLGRPMWLPL 117 (309)
T ss_pred EEECCCcCCCC
Confidence 99998877666
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=87.09 E-value=18 Score=39.82 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=65.7
Q ss_pred HHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcC
Q 005508 414 ELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG 493 (693)
Q Consensus 414 ~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG 493 (693)
+.+. ..|++++-| ||.-+.+..+++.+-+ .++||.+|.-++ +..+....+..+.+.|
T Consensus 104 d~l~-~~~v~~~KI--------------~S~~~~n~~LL~~va~-----~gkPvilstG~~---t~~Ei~~Av~~i~~~g 160 (327)
T TIGR03586 104 DFLE-SLDVPAYKI--------------ASFEITDLPLIRYVAK-----TGKPIIMSTGIA---TLEEIQEAVEACREAG 160 (327)
T ss_pred HHHH-HcCCCEEEE--------------CCccccCHHHHHHHHh-----cCCcEEEECCCC---CHHHHHHHHHHHHHCC
Confidence 4444 356666666 4556677777777544 488999987774 4677888888889999
Q ss_pred C-CEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeC
Q 005508 494 A-SAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG 534 (693)
Q Consensus 494 ~-daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG 534 (693)
. +.+.+|+-+.-.......|+..|..+++.. ++||..++
T Consensus 161 ~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~SD 200 (327)
T TIGR03586 161 CKDLVLLKCTSSYPAPLEDANLRTIPDLAERF--NVPVGLSD 200 (327)
T ss_pred CCcEEEEecCCCCCCCcccCCHHHHHHHHHHh--CCCEEeeC
Confidence 8 566678533211112235889999999988 68996664
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=87.08 E-value=24 Score=36.40 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=75.6
Q ss_pred eEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCC
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY 475 (693)
Q Consensus 396 p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~ 475 (693)
.+...+...++..+.+..+.+. ..|++.|-|.. .+|. +..+..+--++++.+++.++.|+.|-+=+.
T Consensus 9 ~i~~s~~~~~~~~l~~~l~~~~-~~g~~~ihld~--------~d~~---f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~- 75 (229)
T PLN02334 9 IIAPSILSADFANLAEEAKRVL-DAGADWLHVDV--------MDGH---FVPNLTIGPPVVKALRKHTDAPLDCHLMVT- 75 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHH-HcCCCEEEEec--------ccCC---cCCccccCHHHHHHHHhcCCCcEEEEeccC-
Confidence 4566777777777888888776 57999988842 1111 111111112566777766666655544431
Q ss_pred CCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEE
Q 005508 476 FEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC 555 (693)
Q Consensus 476 ~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgV 555 (693)
+....+..+.++|++.|++|... .... .....++.+++.-- .+=+..|- -+..+.+...+.. .++|.|
T Consensus 76 -----~p~d~~~~~~~~gad~v~vH~~q---~~~d-~~~~~~~~i~~~g~-~iGls~~~-~t~~~~~~~~~~~-~~~Dyi 143 (229)
T PLN02334 76 -----NPEDYVPDFAKAGASIFTFHIEQ---ASTI-HLHRLIQQIKSAGM-KAGVVLNP-GTPVEAVEPVVEK-GLVDMV 143 (229)
T ss_pred -----CHHHHHHHHHHcCCCEEEEeecc---ccch-hHHHHHHHHHHCCC-eEEEEECC-CCCHHHHHHHHhc-cCCCEE
Confidence 12345666788999999999762 0001 11245555554320 11222221 1234455554432 239999
Q ss_pred EEc
Q 005508 556 MIA 558 (693)
Q Consensus 556 MIG 558 (693)
+++
T Consensus 144 ~~~ 146 (229)
T PLN02334 144 LVM 146 (229)
T ss_pred EEE
Confidence 885
|
|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.99 E-value=0.26 Score=49.90 Aligned_cols=30 Identities=37% Similarity=0.907 Sum_probs=23.0
Q ss_pred cccCChhhhccCCCCCCCCCCCCCCCCChhhhh
Q 005508 100 ASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFK 132 (693)
Q Consensus 100 ~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~~yl 132 (693)
....|.-+-.+| -|-|||.|+|+||-..|.
T Consensus 140 qpdVCKdyk~TG---YCGYGDsCKflH~R~D~K 169 (259)
T COG5152 140 QPDVCKDYKETG---YCGYGDSCKFLHDRSDFK 169 (259)
T ss_pred Ccccccchhhcc---cccCCchhhhhhhhhhhh
Confidence 345688887777 788888888888877664
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.99 E-value=4.6 Score=44.47 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhhCCCcEEEEc-------CCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCCh
Q 005508 407 DTLARTVELIDQQCTVDFIDIN-------MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGK 479 (693)
Q Consensus 407 e~~~~AA~~~~~~aG~D~IDLN-------~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~ 479 (693)
..+-++|..+...+--..|+|+ .+||-+-.+ .+ .+...+.++...-++ ..
T Consensus 30 ~~L~~aA~~~R~~~~g~~V~l~~ii~iktg~c~edC~y----C~---------------qS~~~~~~~~~~~l~----~~ 86 (335)
T COG0502 30 ELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAY----CS---------------QSARYKTGVKARKLM----EV 86 (335)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEEEeecCCCCCCCCC----cc---------------ccccCcCCCchhhcC----CH
Confidence 4677888888655434567774 356776432 11 111113333333333 35
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
+++++-|+++.+.|+....+-.--+.-.+....-.+.|..|++.. +++|.+|=|+.+.+.++++.+ .|+|.+=.-
T Consensus 87 eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~--~le~c~slG~l~~eq~~~L~~--aGvd~ynhN- 161 (335)
T COG0502 87 EEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEEL--GLEVCASLGMLTEEQAEKLAD--AGVDRYNHN- 161 (335)
T ss_pred HHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhc--CcHHhhccCCCCHHHHHHHHH--cChhheecc-
Confidence 678999999999996665553222221122223356677777777 699999988999999999654 688887542
Q ss_pred HHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Q 005508 560 GALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHF 612 (693)
Q Consensus 560 gaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrf 612 (693)
+=.+|.+|.+|.-.+ |..+|++.++.--+.+++---..--|+..+..-
T Consensus 162 -LeTs~~~y~~I~tt~----t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eD 209 (335)
T COG0502 162 -LETSPEFYENIITTR----TYEDRLNTLENVREAGIEVCSGGIVGLGETVED 209 (335)
T ss_pred -cccCHHHHcccCCCC----CHHHHHHHHHHHHHcCCccccceEecCCCCHHH
Confidence 223788888886654 457999999988888876543334455444443
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=86.75 E-value=7.5 Score=38.72 Aligned_cols=93 Identities=10% Similarity=0.132 Sum_probs=56.7
Q ss_pred HHHHHHHhcccc-ccC-EEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHH---HcCC
Q 005508 452 MKGIIEATSGTV-DKP-ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR---KASD 526 (693)
Q Consensus 452 l~eIV~av~~~v-~iP-VtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~---~~~~ 526 (693)
+.+.++++++.. ..+ |.|-.+. .+ -+..+.++|+|.|-+..-+ .+.++++.+ ....
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~-----~e----e~~ea~~~g~d~I~lD~~~----------~~~~~~~v~~l~~~~~ 126 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVEN-----LE----EAEEALEAGADIIMLDNMS----------PEDLKEAVEELRELNP 126 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESS-----HH----HHHHHHHTT-SEEEEES-C----------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCceEEEEcCC-----HH----HHHHHHHhCCCEEEecCcC----------HHHHHHHHHHHhhcCC
Confidence 456666666655 333 6665553 22 2344556999999887432 233444333 3333
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 527 ~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
++-|.++||| +.+.+.++.. +|+|.+.+|.-...=|+
T Consensus 127 ~v~ie~SGGI-~~~ni~~ya~--~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 127 RVKIEASGGI-TLENIAEYAK--TGVDVISVGSLTHSAPP 163 (169)
T ss_dssp TSEEEEESSS-STTTHHHHHH--TT-SEEEECHHHHSBE-
T ss_pred cEEEEEECCC-CHHHHHHHHh--cCCCEEEcChhhcCCcc
Confidence 6999999999 7788888665 79999999976554443
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
|---|
Probab=86.63 E-value=5.5 Score=43.64 Aligned_cols=117 Identities=13% Similarity=0.032 Sum_probs=63.5
Q ss_pred HHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCC
Q 005508 415 LIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGA 494 (693)
Q Consensus 415 ~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~ 494 (693)
+..+++|+|+|+||+-..-+.. --.-++.+.++|+.|.+++++||.|=..... ..+..-|-..|+.++=
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~--------~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~---~kD~evleaale~~~g 151 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNG--------KDKSPEEAAKTVEEVLQAVDVPLIIGGSGNP---EKDAEVLEKVAEAAEG 151 (319)
T ss_pred HHHHHhCCCEEEEECCCCCccc--------ccchHHHHHHHHHHHHHhCCCCEEEecCCCC---CCCHHHHHHHHHHhCC
Confidence 3333679999999952111100 0123556788999998889999987333211 1223333333443331
Q ss_pred CEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeC--CCCCHHHHHHHHhcCCCc
Q 005508 495 SAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG--DIYSYLDWNKHKSDCPEL 552 (693)
Q Consensus 495 daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNG--dI~s~eDa~~~l~~~~ga 552 (693)
....|.+-+ ..+|+.+..++... +.|||+-. ||.-.......+.+ .|+
T Consensus 152 ~~pLInSat-------~en~~~i~~lA~~y--~~~Vva~s~~Dln~ak~L~~~l~~-~Gi 201 (319)
T PRK04452 152 ERCLLGSAE-------EDNYKKIAAAAMAY--GHAVIAWSPLDINLAKQLNILLTE-LGV 201 (319)
T ss_pred CCCEEEECC-------HHHHHHHHHHHHHh--CCeEEEEcHHHHHHHHHHHHHHHH-cCC
Confidence 212233222 12578788888777 68888775 44444444444444 344
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.59 E-value=6 Score=42.21 Aligned_cols=184 Identities=15% Similarity=0.142 Sum_probs=105.7
Q ss_pred EEEc-cCCCCCcHHHHHHH---HHcCCCEEEecccccc--hh-ccCCh-hhhhhhh--ccCCCCeEEEEecCCCHHHHHH
Q 005508 342 LYLA-PLTTVGNLPFRRVC---KVLGADVTCGEMAMCT--NL-LQGQA-SEWALLR--RHSSEDLFGVQICGAYPDTLAR 411 (693)
Q Consensus 342 iiLA-PMt~v~dlpFRrl~---~~~Gadl~~TEM~~a~--~l-l~g~~-~e~~ll~--~h~~e~p~gvQL~G~~pe~~~~ 411 (693)
+++| |-+--+..-.+..+ +..||+++.....--. |. .||.. .-..+++ .+..+-|++.-+. ++.++..
T Consensus 47 ~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm--~~~~~e~ 124 (286)
T COG2876 47 RVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVM--DVRDVEA 124 (286)
T ss_pred EEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEec--CHHHHHH
Confidence 4555 54433444445544 3468887655433211 11 12221 1122332 3455667766664 4444433
Q ss_pred HHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHH
Q 005508 412 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT 491 (693)
Q Consensus 412 AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~e 491 (693)
+++. +|.|.| |+..|++..+|.++ -..++||..|=.++ .+.++.+.-|..+..
T Consensus 125 ~~~y------~Dilqv--------------GARNMQNF~LLke~-----G~~~kPvLLKRg~~--aTieEwL~AAEYI~s 177 (286)
T COG2876 125 AAEY------ADILQV--------------GARNMQNFALLKEV-----GRQNKPVLLKRGLS--ATIEEWLNAAEYILS 177 (286)
T ss_pred HHhh------hhHHHh--------------cccchhhhHHHHHh-----cccCCCeEEecCcc--ccHHHHHHHHHHHHh
Confidence 3321 233333 56677787776553 24589999997775 356778888888999
Q ss_pred cCCCEEEEecccc--cCccCC-CccHHHHHHHHHHcCCCceEEEeCCC----CCHH--HHHHHHhcCCCcCEEEEc
Q 005508 492 WGASAVTVHGRTR--QQRYSK-LADWDYIYQCARKASDDLQVLGNGDI----YSYL--DWNKHKSDCPELASCMIA 558 (693)
Q Consensus 492 aG~daItVHgRtr--~q~ytg-~Adw~~I~~i~~~~~~~IPVIgNGdI----~s~e--Da~~~l~~~~gaDgVMIG 558 (693)
.|-..|++--|-- -..+++ ..|...|..+++.. ++|||++=.= .++- -+..++. .||||+||=
T Consensus 178 ~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPVivDpSH~~Grr~lv~pla~AA~A--aGAdglmiE 249 (286)
T COG2876 178 HGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVIVDPSHATGRRDLVEPLAKAAIA--AGADGLMIE 249 (286)
T ss_pred CCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEEECCCCcccchhhHHHHHHHHHh--ccCCeeEEE
Confidence 9999998865521 111222 35889999999988 8999975221 1221 1333343 699999985
|
|
| >PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type | Back alignment and domain information |
|---|
Probab=86.54 E-value=0.38 Score=30.96 Aligned_cols=12 Identities=50% Similarity=1.146 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCC
Q 005508 115 SCPYKDKCRFSH 126 (693)
Q Consensus 115 ~C~~Gd~Crf~H 126 (693)
.|++|++|.|+|
T Consensus 7 ~C~~~~~C~f~H 18 (19)
T PF14608_consen 7 NCTNGDNCPFSH 18 (19)
T ss_pred CCCCCCcCccCC
Confidence 499999999999
|
|
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.35 E-value=26 Score=38.52 Aligned_cols=126 Identities=8% Similarity=0.065 Sum_probs=84.5
Q ss_pred cCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc--cCEEEEecCCCCCCh
Q 005508 402 CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVRTGYFEGK 479 (693)
Q Consensus 402 ~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~--iPVtVKiR~G~~d~~ 479 (693)
....++.+.+.++.. .|+..+-|..|=+ | .+++.-.+.|++|++.++ +-|.|-.--+| +.
T Consensus 86 ~~~~~e~~~~~~~~~---~G~~~~KvKVg~~---------~----~~~~~Di~rv~avRe~lGpd~~LrvDAN~~w--s~ 147 (327)
T PRK02901 86 PAVDAAQVPEVLARF---PGCRTAKVKVAEP---------G----QTLADDVARVNAVRDALGPDGRVRVDANGGW--SV 147 (327)
T ss_pred CCCCHHHHHHHHHHh---CCCCEEEEEECCC---------C----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCC--CH
Confidence 334566544433321 3777777765411 1 245566677788888773 44444444456 35
Q ss_pred hHHHHHHHHH-HHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 480 NRIDSLIADI-GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 480 ~~~~~la~~L-~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
.++..+++.| ++.++.+|- |-. .+++..+++++.+ ++||.+.=.+++..|+..++.. ..+|.+++=
T Consensus 148 ~~Ai~~~~~L~e~~~l~~iE-------qP~---~~~~~la~Lr~~~--~vPIA~DEs~~~~~d~~~l~~~-~a~dvi~ik 214 (327)
T PRK02901 148 DEAVAAARALDADGPLEYVE-------QPC---ATVEELAELRRRV--GVPIAADESIRRAEDPLRVARA-GAADVAVLK 214 (327)
T ss_pred HHHHHHHHHhhhccCceEEe-------cCC---CCHHHHHHHHHhC--CCCEEeCCCCCCHHHHHHHHHc-CCCCEEEeC
Confidence 7799999999 677777763 222 2367778888888 6999887789999999998886 789988754
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=86.20 E-value=17 Score=40.34 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=79.5
Q ss_pred CeEEEEecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC
Q 005508 395 DLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 473 (693)
Q Consensus 395 ~p~gvQL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~ 473 (693)
.|+.+.|=+. +.+...+| + .+||+-|-+-.+- .+ .+.-...+..+-+...++|+-... .++.|-.=+-.
T Consensus 74 VPValHLDHg~~~e~i~~A---i--~~GFtSVMiDgS~-l~---~~~~~~p~eENI~~Tkevve~Ah~-~GvsVEaELG~ 143 (347)
T TIGR01521 74 IPVVMHQDHGNSPATCQRA---I--QLGFTSVMMDGSL-RE---DAKTPADYDYNVRVTAEVVAFAHA-VGASVEGELGC 143 (347)
T ss_pred CcEEEECCCCCCHHHHHHH---H--HcCCCEEeecCcC-Cc---ccCCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 4677777433 45444333 2 3577777774221 00 000011234566666777665543 24444333221
Q ss_pred -C-CC-------CC------------hhHHHHHHHHHHHcCCCEEEEecccccCccCC---C----ccHHHHHHHHHHcC
Q 005508 474 -G-YF-------EG------------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSK---L----ADWDYIYQCARKAS 525 (693)
Q Consensus 474 -G-~~-------d~------------~~~~~~la~~L~eaG~daItVHgRtr~q~ytg---~----Adw~~I~~i~~~~~ 525 (693)
| .. +. -.+..+..+.+++.|||+|.+.-+|..+.|.+ + .+|+.+++|++.++
T Consensus 144 igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~ 223 (347)
T TIGR01521 144 LGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP 223 (347)
T ss_pred cccccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC
Confidence 1 10 10 11334555556778999998877777777764 3 68999999999884
Q ss_pred CCceEEEeCCCCCHHHHHH
Q 005508 526 DDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 526 ~~IPVIgNGdI~s~eDa~~ 544 (693)
++|++.-|+=-.++++.+
T Consensus 224 -~vPLVLHGgSG~p~~~~~ 241 (347)
T TIGR01521 224 -DTHLVMHGSSSVPQEWLD 241 (347)
T ss_pred -CCCEEEeCCCCCchHhhH
Confidence 599999998776644333
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=86.14 E-value=7.7 Score=43.34 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=36.3
Q ss_pred CCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 510 KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 510 g~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
...+|+.|+.+++.. ++|||.=| |.+.+|+..+++ .|||+|.|+
T Consensus 209 ~~~tW~di~wlr~~~--~~PiivKg-V~~~~dA~~a~~--~Gvd~I~Vs 252 (367)
T PLN02493 209 RTLSWKDVQWLQTIT--KLPILVKG-VLTGEDARIAIQ--AGAAGIIVS 252 (367)
T ss_pred CCCCHHHHHHHHhcc--CCCEEeec-CCCHHHHHHHHH--cCCCEEEEC
Confidence 446899999999987 69988754 579999999876 699999774
|
|
| >PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=86.07 E-value=26 Score=37.12 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=78.3
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC
Q 005508 394 EDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 473 (693)
Q Consensus 394 e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~ 473 (693)
+..+++-+.-.+|. +++++. .+|||+|=|-+= .| . -+.+.+..++++++. .+++..|++..
T Consensus 18 ~~~~g~~~~~~sp~----~~e~~a-~~G~D~v~iD~E--------Hg--~---~~~~~~~~~i~a~~~-~g~~~lVRvp~ 78 (256)
T PRK10558 18 QVQIGCWSALANPI----TTEVLG-LAGFDWLVLDGE--------HA--P---NDVSTFIPQLMALKG-SASAPVVRVPT 78 (256)
T ss_pred CceEEEEEcCCCcH----HHHHHH-hcCCCEEEEccc--------cC--C---CCHHHHHHHHHHHhh-cCCCcEEECCC
Confidence 44566666556663 455554 579999888651 11 1 256677888888754 46677775543
Q ss_pred CCCCChhHHHHHHHHHHHcCCCEEEE-ecccc-------------------------cCccCCCccHHHHHHHHHHcCCC
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTV-HGRTR-------------------------QQRYSKLADWDYIYQCARKASDD 527 (693)
Q Consensus 474 G~~d~~~~~~~la~~L~eaG~daItV-HgRtr-------------------------~q~ytg~Adw~~I~~i~~~~~~~ 527 (693)
.+ ...++++.+.|++.|.+ |-+|. ..+|.. .-+|++..-+ .
T Consensus 79 --~~-----~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~--~~~y~~~an~----~ 145 (256)
T PRK10558 79 --NE-----PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGT--VPDYFAQSNK----N 145 (256)
T ss_pred --CC-----HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCC--hHHHHHHhcc----c
Confidence 22 35677888999999977 22221 112221 1145554433 2
Q ss_pred ceEEEe-CCCCCHHHHHHHHhcCCCcCEEEEcHHHhh
Q 005508 528 LQVLGN-GDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 528 IPVIgN-GdI~s~eDa~~~l~~~~gaDgVMIGRgaL~ 563 (693)
+.|+.. =...-.+.+.+++.. .|+|+|+||.+=|.
T Consensus 146 ~~vi~~IEt~~av~ni~eI~av-~gvd~l~iG~~DLs 181 (256)
T PRK10558 146 ITVLVQIESQQGVDNVDAIAAT-EGVDGIFVGPSDLA 181 (256)
T ss_pred cEEEEEECCHHHHHHHHHHhCC-CCCcEEEECHHHHH
Confidence 334432 222223344555553 78999999988554
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=86.03 E-value=7 Score=43.55 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=37.2
Q ss_pred CccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 511 LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 511 ~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
...|+.|+.+++.. +.|||.-| |.+++|+..+++ .|||+|.|+
T Consensus 222 ~~~w~~i~~ir~~~--~~pviiKg-V~~~eda~~a~~--~G~d~I~VS 264 (361)
T cd04736 222 SFNWQDLRWLRDLW--PHKLLVKG-IVTAEDAKRCIE--LGADGVILS 264 (361)
T ss_pred cCCHHHHHHHHHhC--CCCEEEec-CCCHHHHHHHHH--CCcCEEEEC
Confidence 35799999999998 58999886 999999999887 699999764
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=86.03 E-value=51 Score=35.06 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=92.0
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe
Q 005508 392 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 392 ~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi 471 (693)
....|+++++.+.+.++..+.|+.+. .+|+|+|-+-. |.- +--..+-+.+-.+.|.+++++||.+--
T Consensus 65 ~~~~~vi~gv~~~s~~~~i~~a~~a~-~~Gad~v~v~p--P~y----------~~~~~~~i~~~~~~i~~~~~~pi~lYn 131 (285)
T TIGR00674 65 NGRVPVIAGTGSNATEEAISLTKFAE-DVGADGFLVVT--PYY----------NKPTQEGLYQHFKAIAEEVDLPIILYN 131 (285)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHHHH-HcCCCEEEEcC--CcC----------CCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34568999999999999999998887 68999998842 431 111356677777788777789988764
Q ss_pred ---cCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhc
Q 005508 472 ---RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSD 548 (693)
Q Consensus 472 ---R~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~ 548 (693)
++|..-+ .+++.+|.+.+ ..+-+ .++ ..|+..+.++.+..+.++.|+...| ..+...+.
T Consensus 132 ~P~~tg~~l~----~~~l~~L~~~~-~v~gi-------K~s-~~d~~~~~~l~~~~~~~~~v~~G~d----~~~~~~~~- 193 (285)
T TIGR00674 132 VPSRTGVSLY----PETVKRLAEEP-NIVAI-------KEA-TGNLERISEIKAIAPDDFVVLSGDD----ALTLPMMA- 193 (285)
T ss_pred CcHHhcCCCC----HHHHHHHHcCC-CEEEE-------EeC-CCCHHHHHHHHHhcCCCeEEEECch----HHHHHHHH-
Confidence 3343222 34445554433 21211 111 2467778888776653455555444 22334444
Q ss_pred CCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 549 CPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 549 ~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
.|+||++.|-+.+ -|.++.++-+
T Consensus 194 -~G~~G~i~~~~~~-~P~~~~~l~~ 216 (285)
T TIGR00674 194 -LGGKGVISVTANV-APKLMKEMVN 216 (285)
T ss_pred -cCCCEEEehHHHh-hHHHHHHHHH
Confidence 5899999876653 4556666543
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=85.97 E-value=44 Score=35.74 Aligned_cols=140 Identities=15% Similarity=0.180 Sum_probs=78.4
Q ss_pred CCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 393 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 393 ~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
.+..++.-+.-.+|. +++++. .+|||+|=|-+ .-|. -+.+.+..+++++. ..+.+..|++.
T Consensus 16 G~~~~G~~~~~~sp~----~~E~~a-~~GfD~v~iD~----------EHg~---~~~~~l~~~i~a~~-~~g~~~lVRvp 76 (267)
T PRK10128 16 GEVQIGLWLSSTTSY----MAEIAA-TSGYDWLLIDG----------EHAP---NTIQDLYHQLQAIA-PYASQPVIRPV 76 (267)
T ss_pred CCceEEEEecCCCcH----HHHHHH-HcCCCEEEEcc----------ccCC---CCHHHHHHHHHHHH-hcCCCeEEECC
Confidence 345577766666663 444454 57999998865 1111 24566777888875 34666677544
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCEEEE-eccccc--------Ccc----------C--CCccH----HHHHHHHHHcCCC
Q 005508 473 TGYFEGKNRIDSLIADIGTWGASAVTV-HGRTRQ--------QRY----------S--KLADW----DYIYQCARKASDD 527 (693)
Q Consensus 473 ~G~~d~~~~~~~la~~L~eaG~daItV-HgRtr~--------q~y----------t--g~Adw----~~I~~i~~~~~~~ 527 (693)
. .+ ..+++++.+.|++.|.+ |-.|.+ -+| . ....| +|+...-+.+
T Consensus 77 ~--~~-----~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~--- 146 (267)
T PRK10128 77 E--GS-----KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSL--- 146 (267)
T ss_pred C--CC-----HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhcccc---
Confidence 3 22 36778899999999987 222211 011 0 00111 4544443322
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 528 LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 528 IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
+.++-.=...-.+.+.+++.. .|+|++++|.+=|
T Consensus 147 ~vi~qiEt~~a~~n~~~I~~~-~gvd~i~~G~~Dl 180 (267)
T PRK10128 147 CLLVQVESKTALDNLDEILDV-EGIDGVFIGPADL 180 (267)
T ss_pred EEEEEECCHHHHHhHHHHhCC-CCCCEEEECHHHH
Confidence 223322333334445565554 8999999998844
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=85.86 E-value=14 Score=41.37 Aligned_cols=141 Identities=10% Similarity=0.038 Sum_probs=78.9
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHH
Q 005508 411 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 490 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ 490 (693)
+.++.+. ++|+|.+.+|+=. .+..+.+-.+. ...+...+.++.+++ .++++..-+=.|..++.++..+++..|.
T Consensus 179 E~l~~Lk-eAGld~~~~~LeT-s~~~y~~i~~~---~s~e~rl~ti~~a~~-~Gi~v~sg~IiGlgEt~edrv~~l~~Lr 252 (379)
T PLN02389 179 EQAAQLK-EAGLTAYNHNLDT-SREYYPNVITT---RSYDDRLETLEAVRE-AGISVCSGGIIGLGEAEEDRVGLLHTLA 252 (379)
T ss_pred HHHHHHH-HcCCCEEEeeecC-ChHHhCCcCCC---CCHHHHHHHHHHHHH-cCCeEeEEEEECCCCCHHHHHHHHHHHH
Confidence 4455666 6899999988743 22222211111 245555566666644 3677765555566667778888888888
Q ss_pred Hc--CCCEEEEec-----ccccCccCCCccHHHHHHHH---HHcCCCceEEEeCCCCCHHH-HHHHHhcCCCcCEEEEcH
Q 005508 491 TW--GASAVTVHG-----RTRQQRYSKLADWDYIYQCA---RKASDDLQVLGNGDIYSYLD-WNKHKSDCPELASCMIAR 559 (693)
Q Consensus 491 ea--G~daItVHg-----Rtr~q~ytg~Adw~~I~~i~---~~~~~~IPVIgNGdI~s~eD-a~~~l~~~~gaDgVMIGR 559 (693)
+. .++.|.++. .|.-........+++++.++ -..|..+.-|..|-+.-..+ ....+. .||+++|+|=
T Consensus 253 ~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~--~GAN~~~~g~ 330 (379)
T PLN02389 253 TLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFL--AGANSIFTGD 330 (379)
T ss_pred hcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHH--hCCCEEEECC
Confidence 77 567776643 33221112223445444333 33543334455555444444 444454 6999999993
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.81 E-value=3.9 Score=43.64 Aligned_cols=139 Identities=9% Similarity=0.033 Sum_probs=83.7
Q ss_pred HHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEe-----------------cccccCccCCCccH
Q 005508 452 MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH-----------------GRTRQQRYSKLADW 514 (693)
Q Consensus 452 l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVH-----------------gRtr~q~ytg~Adw 514 (693)
+.+..+.++..-..-+..-+-.|+ .+.+++.++++.|.+.|+|+|-|- -|--.++++....|
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~Gd-P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~l 82 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGD-PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTL 82 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCC-CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHH
Confidence 344444444443333444556776 467789999999999999999882 22233455555568
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCC-----HHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHHhccC------C-CCCHH
Q 005508 515 DYIYQCARKASDDLQVLGNGDIYS-----YLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRH------W-DITSG 582 (693)
Q Consensus 515 ~~I~~i~~~~~~~IPVIgNGdI~s-----~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIke~~~------~-d~s~~ 582 (693)
++++++++.-. .+|++.=+=.+- .+...+.+.+ .|+||++|.==-+....-|.+..+..- . +.+..
T Consensus 83 el~~~~r~~~~-~~Pivlm~Y~Npi~~~Gie~F~~~~~~-~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~ 160 (265)
T COG0159 83 ELVEEIRAKGV-KVPIVLMTYYNPIFNYGIEKFLRRAKE-AGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD 160 (265)
T ss_pred HHHHHHHhcCC-CCCEEEEEeccHHHHhhHHHHHHHHHH-cCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 88889886643 688876654322 3444445555 799999985322222222222222111 1 33566
Q ss_pred HHHHHHHHHHH
Q 005508 583 ERLNIMKDFAR 593 (693)
Q Consensus 583 Erl~il~~~~~ 593 (693)
+|++.+.++.+
T Consensus 161 ~rl~~i~~~a~ 171 (265)
T COG0159 161 ERLKKIAEAAS 171 (265)
T ss_pred HHHHHHHHhCC
Confidence 89988887774
|
|
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.80 E-value=5.5 Score=44.74 Aligned_cols=118 Identities=9% Similarity=-0.003 Sum_probs=82.1
Q ss_pred hCCCcEEEEcCC-CCCcccccCCccccccCChHHHHHHHHHhcccc--ccCEEEEecCCCCCChhHHHHHHHHHHHcCCC
Q 005508 419 QCTVDFIDINMG-CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRIDSLIADIGTWGAS 495 (693)
Q Consensus 419 ~aG~D~IDLN~G-CP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~d 495 (693)
+.||..+-|.+| -|. .| ...++.-.+.|++||+++ ++.|.|-.-.+|+ ..++.++++.|++.|+.
T Consensus 170 ~~Gf~~~Kik~~~g~~-----~g-----~~~~~~di~~v~avReavG~d~~l~vDaN~~~~--~~~Ai~~~~~le~~~l~ 237 (394)
T PRK15440 170 EMGFIGGKMPLHHGPA-----DG-----DAGLRKNAAMVADMREKVGDDFWLMLDCWMSLD--VNYATKLAHACAPYGLK 237 (394)
T ss_pred hCCCCEEEEcCCcCcc-----cc-----hHHHHHHHHHHHHHHHhhCCCCeEEEECCCCCC--HHHHHHHHHHhhhcCCc
Confidence 459999988753 110 01 123466678889999888 5778877776773 57899999999999988
Q ss_pred EEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 496 AVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 496 aItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
+| +|-. .+-|++-.+++++.++.+|||.+.=.+++..++..+++. ..+|.|++
T Consensus 238 wi-------EEPl-~~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~-~a~Divq~ 290 (394)
T PRK15440 238 WI-------EECL-PPDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEM-GCIDIIQP 290 (394)
T ss_pred ce-------eCCC-CcccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHc-CCCCEEeC
Confidence 77 2332 345788888999887312444333357789999998886 67888874
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=85.78 E-value=13 Score=39.02 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=77.3
Q ss_pred cCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHH
Q 005508 438 NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI 517 (693)
Q Consensus 438 k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I 517 (693)
+...|-.+..+.+.+..+++.+++. ++.|++=|-+. .+-++...+.|++.|-+|...-...+........+
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~-gI~VSLFiDPd--------~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el 168 (234)
T cd00003 98 TTEGGLDVAGQAEKLKPIIERLKDA-GIRVSLFIDPD--------PEQIEAAKEVGADRVELHTGPYANAYDKAEREAEL 168 (234)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHC-CCEEEEEeCCC--------HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHH
Confidence 3556778888999999999998764 77787766542 24455667789999999976533333222212223
Q ss_pred HHHH------HHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 518 YQCA------RKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 518 ~~i~------~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
.+++ ... ++-|=+..|+ +++.+..+.. .++..-|-||..++.+-
T Consensus 169 ~~i~~aa~~a~~~--GL~VnAGHgL-ny~Nv~~i~~-ip~i~ElnIGHsiia~A 218 (234)
T cd00003 169 ERIAKAAKLAREL--GLGVNAGHGL-NYENVKPIAK-IPGIAELNIGHAIISRA 218 (234)
T ss_pred HHHHHHHHHHHHc--CCEEecCCCC-CHHHHHHHHh-CCCCeEEccCHHHHHHH
Confidence 3222 233 4667666676 7888877655 48899999999887653
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase | Back alignment and domain information |
|---|
Probab=85.63 E-value=29 Score=36.63 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=51.2
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecC
Q 005508 394 EDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 473 (693)
Q Consensus 394 e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~ 473 (693)
+..+++-+.-.+|. +++++. .+|||+|=|-+= .| .-+.+-+..+++++.. .+++..|++..
T Consensus 11 ~~~~G~~~~~~sp~----~~e~~a-~~G~D~v~iD~E--------Hg-----~~~~~~~~~~~~a~~~-~g~~~~VRvp~ 71 (249)
T TIGR03239 11 ETLIGCWSALGNPI----TTEVLG-LAGFDWLLLDGE--------HA-----PNDVLTFIPQLMALKG-SASAPVVRPPW 71 (249)
T ss_pred CceEEEEEcCCCcH----HHHHHH-hcCCCEEEEecc--------cC-----CCCHHHHHHHHHHHhh-cCCCcEEECCC
Confidence 44567666555663 445554 579999888651 11 1245677888887753 46677775433
Q ss_pred CCCCChhHHHHHHHHHHHcCCCEEEE
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTV 499 (693)
Q Consensus 474 G~~d~~~~~~~la~~L~eaG~daItV 499 (693)
.+ ...++++.+.|++.|.+
T Consensus 72 --~~-----~~~i~r~LD~Ga~gIiv 90 (249)
T TIGR03239 72 --NE-----PVIIKRLLDIGFYNFLI 90 (249)
T ss_pred --CC-----HHHHHHHhcCCCCEEEe
Confidence 22 35678888999999987
|
In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which |
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=85.52 E-value=8.8 Score=41.31 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=56.9
Q ss_pred HHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHc-----C
Q 005508 452 MKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKA-----S 525 (693)
Q Consensus 452 l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~-----~ 525 (693)
+.+.|+.+++.. ..+|.|=.+. .+-+..+.++|+|.|-+..-+ -+-++++.+.+ +
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~~---------leea~~a~~agaDiI~LDn~~----------~e~l~~~v~~l~~~~~~ 229 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVES---------LEDALKAAKAGADIIMLDNMT----------PEEIREVIEALKREGLR 229 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCC---------HHHHHHHHHcCcCEEEECCCC----------HHHHHHHHHHHHhcCcC
Confidence 444555555543 4566665443 233444557999999887543 22333333322 1
Q ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHh
Q 005508 526 DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 526 ~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL 562 (693)
.++.+.++|+| +.+.+.++.. +|+|.+.+|.--.
T Consensus 230 ~~~~leaSGGI-~~~ni~~yA~--tGvD~Is~galt~ 263 (278)
T PRK08385 230 ERVKIEVSGGI-TPENIEEYAK--LDVDVISLGALTH 263 (278)
T ss_pred CCEEEEEECCC-CHHHHHHHHH--cCCCEEEeChhhc
Confidence 26889999999 8999988765 7999999996443
|
|
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=85.37 E-value=2.1 Score=43.07 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=61.6
Q ss_pred HHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHc
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 492 (693)
Q Consensus 413 A~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ea 492 (693)
|++++ ++|.-+|-.=---|.+. +...|-+=|.||..+.+|.++| .+||..|.|+|- .-=|+.|+..
T Consensus 27 AkIAE-~AGA~AVMaLervPadi--R~~GGVaRMsDP~~I~eI~~aV----sIPVMAK~RIGH-------fvEAqiLeal 92 (208)
T PF01680_consen 27 AKIAE-EAGAVAVMALERVPADI--RAAGGVARMSDPKMIKEIMDAV----SIPVMAKVRIGH-------FVEAQILEAL 92 (208)
T ss_dssp HHHHH-HHT-SEEEE-SS-HHHH--HHTTS---S--HHHHHHHHHH-----SSEEEEEEETT--------HHHHHHHHHT
T ss_pred HHHHH-HhCCeEEEEeccCCHhH--HhcCCccccCCHHHHHHHHHhe----Eeceeeccccce-------eehhhhHHHh
Confidence 44444 56755554322234442 3345678899999988887765 799999999984 2336889999
Q ss_pred CCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEE
Q 005508 493 GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC 555 (693)
Q Consensus 493 G~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgV 555 (693)
|+|+|.=+- -. .+||..+ .--+..+ ++|++. |..+.-++.+-+.+ ||..+
T Consensus 93 gVD~IDESE-----VL-TpAD~~~-HI~K~~F--~vPFVc--GarnLGEALRRI~E--GAaMI 142 (208)
T PF01680_consen 93 GVDYIDESE-----VL-TPADEEN-HIDKHNF--KVPFVC--GARNLGEALRRIAE--GAAMI 142 (208)
T ss_dssp T-SEEEEET-----TS---S-SS-----GGG---SS-EEE--EESSHHHHHHHHHT--T-SEE
T ss_pred CCceecccc-----cc-ccccccc-cccchhC--CCCeEe--cCCCHHHHHhhHHh--hhhhh
Confidence 999997542 22 3466544 1223344 688875 34577777776664 56544
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.22 E-value=13 Score=39.06 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=69.1
Q ss_pred hCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEE
Q 005508 419 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVT 498 (693)
Q Consensus 419 ~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daIt 498 (693)
.+|+|.||+-= |. .| +-=-..|..+.+|++.+... .||+..|---..+ ..++..-+..+..+|+|+|-
T Consensus 18 ~~GaDiIDvK~--P~-----~G--aLGA~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~-p~~~~~aa~~~a~~GvDyVK 85 (238)
T PRK02227 18 AGGADIIDVKN--PK-----EG--SLGANFPWVIREIVAAVPGR--KPVSATIGDVPYK-PGTISLAALGAAATGADYVK 85 (238)
T ss_pred hcCCCEEEccC--CC-----CC--CCCCCCHHHHHHHHHHhCCC--CCceeeccCCCCC-chHHHHHHHHHHhhCCCEEE
Confidence 36999999931 21 22 11124577778888777643 6888865422211 23444445556779999997
Q ss_pred EecccccCccCCCccHHHHHHH----HHHcCCCceEEEeC--CCC-----CHHHHHHHHhcCCCcCEEEEc
Q 005508 499 VHGRTRQQRYSKLADWDYIYQC----ARKASDDLQVLGNG--DIY-----SYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 499 VHgRtr~q~ytg~Adw~~I~~i----~~~~~~~IPVIgNG--dI~-----s~eDa~~~l~~~~gaDgVMIG 558 (693)
|- ......+ ....+.+..+ +...+ +..||+++ |-. ++.++-.+..+ .|++++||=
T Consensus 86 vG-l~~~~~~--~~~~~~~~~v~~a~~~~~~-~~~vVav~yaD~~r~~~~~~~~l~~~a~~-aGf~g~MlD 151 (238)
T PRK02227 86 VG-LYGGKTA--EEAVEVMKAVVRAVKDLDP-GKIVVAAGYADAHRVGSVSPLSLPAIAAD-AGFDGAMLD 151 (238)
T ss_pred Ec-CCCCCcH--HHHHHHHHHHHHhhhhcCC-CCeEEEEEecccccccCCChHHHHHHHHH-cCCCEEEEe
Confidence 62 1100000 1112333332 22222 56777776 322 66677777776 799999994
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=84.92 E-value=58 Score=34.73 Aligned_cols=148 Identities=11% Similarity=-0.019 Sum_probs=91.2
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEE
Q 005508 392 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIK 470 (693)
Q Consensus 392 ~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVK 470 (693)
....++++++.+.+..+..+.|+.++ ++|+|+|=+- -|.-. --..+-+.+-.+.|.+++ ++||.+-
T Consensus 68 ~~~~~viagv~~~~~~~ai~~a~~a~-~~Gad~v~~~--~P~y~----------~~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 68 KGKVTLIAHVGSLNLKESQELAKHAE-ELGYDAISAI--TPFYY----------KFSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred CCCCeEEeccCCCCHHHHHHHHHHHH-HcCCCEEEEe--CCCCC----------CCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 34468899999999999999999887 7899999874 34321 123466777778887788 8999885
Q ss_pred e---cCCCCCChhHHHHHHHHHHHc-CCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHH
Q 005508 471 V---RTGYFEGKNRIDSLIADIGTW-GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK 546 (693)
Q Consensus 471 i---R~G~~d~~~~~~~la~~L~ea-G~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l 546 (693)
- ++|..- ..+++.+|.+. .+-+|-. + ..|+..+.++.+..+.++.|+...|- .+...+
T Consensus 135 n~P~~tg~~l----~~~~~~~L~~~pnivgiK~---------s-~~d~~~~~~~~~~~~~~~~v~~G~d~----~~~~~~ 196 (288)
T cd00954 135 HIPALTGVNL----TLEQFLELFEIPNVIGVKF---------T-ATDLYDLERIRAASPEDKLVLNGFDE----MLLSAL 196 (288)
T ss_pred eCccccCCCC----CHHHHHHHhcCCCEEEEEe---------C-CCCHHHHHHHHHhCCCCcEEEEechH----HHHHHH
Confidence 3 334322 23444455432 1222211 1 23667777777766434555543332 123334
Q ss_pred hcCCCcCEEEEcHHHhhCCCchhHHHh
Q 005508 547 SDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 547 ~~~~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
. .|++|++.|-+.+ -|+++.++-+
T Consensus 197 ~--~G~~G~i~~~~n~-~P~~~~~l~~ 220 (288)
T cd00954 197 A--LGADGAIGSTYNV-NGKRYRKIFE 220 (288)
T ss_pred H--cCCCEEEeChhhh-CHHHHHHHHH
Confidence 4 5899998875543 4777776654
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.88 E-value=17 Score=38.24 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=76.4
Q ss_pred cCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHH
Q 005508 438 NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI 517 (693)
Q Consensus 438 k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I 517 (693)
+...|-.+..+.+++..+++.+++ .++.|++=|-+ . .+-++...+.|++.|-+|...-...+.. .....+
T Consensus 101 TTegGldv~~~~~~l~~~i~~L~~-~gIrVSLFidP-----~---~~qi~~A~~~GAd~VELhTG~yA~a~~~-~~~~el 170 (239)
T PRK05265 101 TTEGGLDVAGQFDKLKPAIARLKD-AGIRVSLFIDP-----D---PEQIEAAAEVGADRIELHTGPYADAKTE-AEAAEL 170 (239)
T ss_pred cCCccchhhcCHHHHHHHHHHHHH-CCCEEEEEeCC-----C---HHHHHHHHHhCcCEEEEechhhhcCCCc-chHHHH
Confidence 345677888899999999999965 47777776643 1 2345556678999999997653333322 222223
Q ss_pred HHHH------HHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCC
Q 005508 518 YQCA------RKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 518 ~~i~------~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nP 565 (693)
.+++ ... .+-|=+..|+ +++.+..+ ...+++.=|-||..++.+-
T Consensus 171 ~~~~~aa~~a~~l--GL~VnAGHgL-ny~Nv~~i-~~ip~i~EvnIGHsiia~A 220 (239)
T PRK05265 171 ERIAKAAKLAASL--GLGVNAGHGL-NYHNVKPI-AAIPGIEELNIGHAIIARA 220 (239)
T ss_pred HHHHHHHHHHHHc--CCEEecCCCC-CHHhHHHH-hhCCCCeEEccCHHHHHHH
Confidence 3332 233 5777777777 78888775 4458899999999887653
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.78 E-value=14 Score=41.73 Aligned_cols=122 Identities=13% Similarity=0.082 Sum_probs=83.8
Q ss_pred HHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHH
Q 005508 412 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIG 490 (693)
Q Consensus 412 AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~ 490 (693)
-++++. +-|+|.+-|= .-|+|++.+..-++++++.- ..-.++=..++.-.+.+..+++++.|.
T Consensus 103 Fv~ka~-~nGidvfRiF---------------DAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~ 166 (472)
T COG5016 103 FVEKAA-ENGIDVFRIF---------------DALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELL 166 (472)
T ss_pred HHHHHH-hcCCcEEEec---------------hhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHH
Confidence 344444 3488887771 23789999999999887653 233334344444556778999999999
Q ss_pred HcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCC---HHHHHHHHhcCCCcCEE
Q 005508 491 TWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYS---YLDWNKHKSDCPELASC 555 (693)
Q Consensus 491 eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s---~eDa~~~l~~~~gaDgV 555 (693)
+.|+|.|++-.-+ +-.+....++.|+.+++.+ ++||..---..+ .-.+.++++ .|||++
T Consensus 167 ~~g~DSIciKDma--GlltP~~ayelVk~iK~~~--~~pv~lHtH~TsG~a~m~ylkAvE--AGvD~i 228 (472)
T COG5016 167 EMGVDSICIKDMA--GLLTPYEAYELVKAIKKEL--PVPVELHTHATSGMAEMTYLKAVE--AGVDGI 228 (472)
T ss_pred HcCCCEEEeeccc--ccCChHHHHHHHHHHHHhc--CCeeEEecccccchHHHHHHHHHH--hCcchh
Confidence 9999999996432 3345556789999999999 599886544433 233445565 588877
|
|
| >KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.70 E-value=0.57 Score=48.12 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=20.9
Q ss_pred CCCCCcCcccccCCCCCcccccCccccc
Q 005508 141 GECPFLSSEGPCPYGLACRFSGTHRDVV 168 (693)
Q Consensus 141 ~~Cp~f~~~G~Cp~G~~CRF~~sH~~~~ 168 (693)
..|.+|. .|.|. ...|||+.-|..+.
T Consensus 262 pacryfl-lgkcn-npncryvhihysen 287 (377)
T KOG1492|consen 262 PACRYFL-LGKCN-NPNCRYVHIHYSEN 287 (377)
T ss_pred chhhhhh-hccCC-CCCceEEEEeecCC
Confidence 4688886 88896 46899999998765
|
|
| >TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917 | Back alignment and domain information |
|---|
Probab=84.53 E-value=10 Score=39.48 Aligned_cols=155 Identities=17% Similarity=0.285 Sum_probs=96.2
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccc-cCCccccccCChHHHHHHHHHhccccccCEEEEecC
Q 005508 395 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVV-NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 473 (693)
Q Consensus 395 ~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~-k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~ 473 (693)
..+.|=|.+.+|.+|..+|+++. ......| | .+. .-|+--++|... ..+|.++..=++.|=.|||.+
T Consensus 56 ~avSVGLGaGdp~Q~~~Va~Ia~-~~~P~HV--N------QvFtgag~sr~~Lg~~---~T~vN~LvsPTG~~G~VkIST 123 (236)
T TIGR03581 56 NAVSVGLGAGDPNQSAMVADISA-HTQPQHI--N------QVFTGVGTSRALLGQA---DTVINGLVSPTGTPGLVNIST 123 (236)
T ss_pred CceEEecCCCCHHHHHHHHHHHH-HcCCccc--c------ccccchHHHHHHhCCc---cceEEEeecCCCccceEEecc
Confidence 34788899999999999999886 3332222 2 121 123333444332 235666666668899999999
Q ss_pred CCCCCh-----hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCC--CHHHHHHHH
Q 005508 474 GYFEGK-----NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY--SYLDWNKHK 546 (693)
Q Consensus 474 G~~d~~-----~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~--s~eDa~~~l 546 (693)
|..... -.....+.+|.+.|++.|-+..-. +......+.++++..... ++++==.|||. +++.+.+..
T Consensus 124 Gp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~---Gl~~leE~~avA~aca~~--g~~lEPTGGIdl~Nf~~I~~i~ 198 (236)
T TIGR03581 124 GPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMG---GLKHLEEYAAVAKACAKH--GFYLEPTGGIDLDNFEEIVQIA 198 (236)
T ss_pred CcccccCCCceeeHHHHHHHHHHcCCCeeeEeecC---CcccHHHHHHHHHHHHHc--CCccCCCCCccHHhHHHHHHHH
Confidence 954321 245567788899999999886432 111222334444433333 57777788882 344444444
Q ss_pred hcCCCcCEEEEcHHHhhCCCchhHHHhcc
Q 005508 547 SDCPELASCMIARGALIKPWIFTEIKEQR 575 (693)
Q Consensus 547 ~~~~gaDgVMIGRgaL~nPwiF~eIke~~ 575 (693)
.+ .|+.-|| |.||..|-+..
T Consensus 199 ld-aGv~kvi--------PHIYssiIDk~ 218 (236)
T TIGR03581 199 LD-AGVEKVI--------PHVYSSIIDKE 218 (236)
T ss_pred HH-cCCCeec--------cccceeccccc
Confidence 44 6888888 99999987543
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. |
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.42 E-value=6 Score=43.62 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcC-CCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 479 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 479 ~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~-~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
.+++.+.|+.+.+.|+..|++.+-.... ....++|+.++.+.+. ..+.++.+=+..+.+.+.++.+ .|+|.+-+
T Consensus 78 ~eEI~~~a~~~~~~G~~~i~i~~~g~~p---~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~Lke--AGld~~n~ 152 (345)
T PRK15108 78 VEQVLESARKAKAAGSTRFCMGAAWKNP---HERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLAN--AGLDYYNH 152 (345)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCCC---CcchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHH--cCCCEEee
Confidence 4678888998999999999774322111 1124566655543321 1466665555667888877554 79999887
Q ss_pred cHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 005508 558 ARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLS 618 (693)
Q Consensus 558 GRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls 618 (693)
.=-. .|..|.+|.. .-+..+|++.++.-.+.++.-.-.--.|+..+...+.+.+.
T Consensus 153 ~leT--~p~~f~~I~~----~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~ 207 (345)
T PRK15108 153 NLDT--SPEFYGNIIT----TRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLL 207 (345)
T ss_pred cccc--ChHhcCCCCC----CCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHH
Confidence 6433 6888887753 23678999999998877763321113455555555444433
|
|
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=84.38 E-value=1.6 Score=44.07 Aligned_cols=131 Identities=10% Similarity=0.163 Sum_probs=74.1
Q ss_pred EecCC-CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCC
Q 005508 400 QICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG 478 (693)
Q Consensus 400 QL~G~-~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~ 478 (693)
=++.+ +++.+.+ ++. .+++|.|.||.- .+... ++.++. ++|+.-.++....-+
T Consensus 53 gVf~~~~~~~I~~---~~~-~~~ld~vQLHG~-----------------e~~e~---~~~l~~--~~~vi~~~~v~~~~~ 106 (197)
T PF00697_consen 53 GVFVNQSPEEILE---IVE-ELGLDVVQLHGD-----------------ESPEY---IKLLRA--GLPVIKAIHVDKDID 106 (197)
T ss_dssp EEESSS-HHHHHH---HHH-HCTESEEEE-SG-----------------G-HHH---HHHHHT--TSEEEEEEEESSCHS
T ss_pred EEEcCCCHHHHHH---HHH-HcCCCEEEECCC-----------------CCHHH---HHHhhc--CceEEEEEEeCCccc
Confidence 33433 4444544 444 578999999831 12222 233332 467777777653211
Q ss_pred hhHHHHHHHHHHHcC-CCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 479 KNRIDSLIADIGTWG-ASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 479 ~~~~~~la~~L~eaG-~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
.+..+.... ++++-++++. ++-....||+.+..+.+... +.|+|..||| +++.+.+++.. .+..||=+
T Consensus 107 ------~~~~~~~~~~~d~~LlD~~~--GgtG~~~dw~~~~~~~~~~~-~~p~iLAGGl-~p~NV~~ai~~-~~p~gvDv 175 (197)
T PF00697_consen 107 ------LLDYLERYESVDYFLLDSGS--GGTGKTFDWSLLKKIVESYS-PKPVILAGGL-NPENVREAIRQ-VRPYGVDV 175 (197)
T ss_dssp ------CCHHCHCSTT-SEEEEESSS--TSSSS---GGGGCCCHHT-G-TSTEEEESS---TTTHHHHHHH-C--SEEEE
T ss_pred ------hHHHHHhcccccEEeEccCC--CcCCcccCHHHhhhhhhhcc-cCcEEEEcCC-ChHHHHHHHHh-cCceEEEe
Confidence 222333333 3999998332 22233579999999888533 5899999999 77888888886 78899999
Q ss_pred cHHHhhCCCc
Q 005508 558 ARGALIKPWI 567 (693)
Q Consensus 558 GRgaL~nPwi 567 (693)
..|.=.+|-+
T Consensus 176 sSGvE~~pG~ 185 (197)
T PF00697_consen 176 SSGVETSPGV 185 (197)
T ss_dssp SGGGEEETTE
T ss_pred CCccccCCCC
Confidence 9888666644
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >PRK14565 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=84.33 E-value=5.2 Score=42.03 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=41.9
Q ss_pred CccHHHHHHH----HHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCCchhHHH
Q 005508 511 LADWDYIYQC----ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 511 ~Adw~~I~~i----~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPwiF~eIk 572 (693)
.|.-++|.++ ++... +++|+.-|.| +++.+.+++.. .++||+.|||+.| +|.-|.+|-
T Consensus 170 ~a~~e~i~~~~~~Ir~~~~-~~~IlYGGSV-~~~N~~~l~~~-~~iDG~LvG~asl-~~~~f~~ii 231 (237)
T PRK14565 170 IPSNDAIAEAFEIIRSYDS-KSHIIYGGSV-NQENIRDLKSI-NQLSGVLVGSASL-DVDSFCKII 231 (237)
T ss_pred CCCHHHHHHHHHHHHHhCC-CceEEEcCcc-CHhhHHHHhcC-CCCCEEEEechhh-cHHHHHHHH
Confidence 3555555444 33332 6899999998 66777776664 8999999999998 777787764
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.30 E-value=4.6 Score=43.04 Aligned_cols=131 Identities=14% Similarity=0.097 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHH----HHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcC
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIY----QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 478 ~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~----~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaD 553 (693)
+.+++.+.|+.+.+.|+..+.+..... .+.. ..++|+. .+++..+ .+.+.++-+..+.+.+.++.+ .|+|
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv~sg~--~~~~-~~~e~~~ei~~~ik~~~p-~l~i~~s~G~~~~e~l~~Lk~--aGld 114 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLVTSGR--GLDD-KKLEYVAEAAKAVKKEVP-GLHLIACNGTASVEQLKELKK--AGIF 114 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccC--CCCc-ccHHHHHHHHHHHHhhCC-CcEEEecCCCCCHHHHHHHHH--cCCC
Confidence 346778888888889999987732111 1222 2455554 4444443 577777778889998888655 6999
Q ss_pred EEEEcHHHhhCCCchhHHHhccCCCCCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHh
Q 005508 554 SCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYT 620 (693)
Q Consensus 554 gVMIGRgaL~nPwiF~eIke~~~~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~e~ls~~ 620 (693)
.+-++=-. .+.+|.++.. ..+..+|++.++...+.+++-...--.|+..+...+.+.+.++
T Consensus 115 ~~~~~lEt--~~~~~~~i~~----~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~l 175 (279)
T PRK08508 115 SYNHNLET--SKEFFPKICT----THTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSL 175 (279)
T ss_pred EEcccccc--hHHHhcCCCC----CCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHH
Confidence 99875222 2445555432 2346788888887767666533222345555555555444444
|
|
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=84.28 E-value=5.8 Score=40.58 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcc-ccccCEEEEecCCCCCChhHHHHH
Q 005508 407 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG-TVDKPITIKVRTGYFEGKNRIDSL 485 (693)
Q Consensus 407 e~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~-~v~iPVtVKiR~G~~d~~~~~~~l 485 (693)
+.+.+-|.... +.|+|.||||.+.-.+.. .........+++..+|+.+++ ..++||+|-..- .+.
T Consensus 19 ~~a~~~a~~~~-~~GAdiIDIg~~st~p~~----~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~---------~~v 84 (210)
T PF00809_consen 19 DEAVKRAREQV-EAGADIIDIGAESTRPGA----TPVSEEEEMERLVPVLQAIREENPDVPLSIDTFN---------PEV 84 (210)
T ss_dssp HHHHHHHHHHH-HTT-SEEEEESSTSSTTS----SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESS---------HHH
T ss_pred HHHHHHHHHHH-HhcCCEEEecccccCCCC----CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCC---------HHH
Confidence 33444455444 579999999987632211 111223456678888888876 558999996543 233
Q ss_pred HHHHHHcCCCEEEE
Q 005508 486 IADIGTWGASAVTV 499 (693)
Q Consensus 486 a~~L~eaG~daItV 499 (693)
++...++|++.|.=
T Consensus 85 ~~~aL~~g~~~ind 98 (210)
T PF00809_consen 85 AEAALKAGADIIND 98 (210)
T ss_dssp HHHHHHHTSSEEEE
T ss_pred HHHHHHcCcceEEe
Confidence 34443448887653
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=84.25 E-value=8 Score=42.30 Aligned_cols=99 Identities=9% Similarity=0.160 Sum_probs=61.7
Q ss_pred CCeEEEEec-------CCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccC
Q 005508 394 EDLFGVQIC-------GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKP 466 (693)
Q Consensus 394 e~p~gvQL~-------G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iP 466 (693)
+-++++=|. |.+++++.+.++.+. ++|+|+|+|..|...........-......+....++.+.+++.+++|
T Consensus 216 d~~v~vris~~~~~~~g~~~eea~~ia~~Le-~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 294 (338)
T cd04733 216 GFPVGIKLNSADFQRGGFTEEDALEVVEALE-EAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTP 294 (338)
T ss_pred CCeEEEEEcHHHcCCCCCCHHHHHHHHHHHH-HcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCC
Confidence 346776664 568888889999887 689999999988643222110000011122333456777788888999
Q ss_pred EEEEecCCCCCChhHHHHHHHHHHHcCCCEEEE
Q 005508 467 ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV 499 (693)
Q Consensus 467 VtVKiR~G~~d~~~~~~~la~~L~eaG~daItV 499 (693)
|.+==++ .+...+.+.|++.++|+|.+
T Consensus 295 Vi~~G~i------~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 295 LMVTGGF------RTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred EEEeCCC------CCHHHHHHHHHcCCCCeeee
Confidence 9884333 22345556666667898865
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.19 E-value=19 Score=37.98 Aligned_cols=136 Identities=13% Similarity=0.092 Sum_probs=74.6
Q ss_pred eEEEEec-CCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc--cCEEEEec
Q 005508 396 LFGVQIC-GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD--KPITIKVR 472 (693)
Q Consensus 396 p~gvQL~-G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~--iPVtVKiR 472 (693)
++++-+= +-=|..+..+++.+. ..|+|.|.+|. +++ .+-+...+++....-. +-||+=..
T Consensus 64 ~VflDlK~~DIpnT~~~~~~~~~-~~g~d~vtvH~-----------~~G-----~~~~~~~~e~~~~~~~~vl~vT~lts 126 (240)
T COG0284 64 KVFLDLKLADIPNTVALAAKAAA-DLGADAVTVHA-----------FGG-----FDMLRAAKEALEAGGPFVLAVTSLTS 126 (240)
T ss_pred ceEEeeecccchHHHHHHHHHhh-hcCCcEEEEeC-----------cCC-----HHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 5555553 334778888888876 67999999983 332 1122333333322111 12222222
Q ss_pred CCCC---------CChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceE----EEe------
Q 005508 473 TGYF---------EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQV----LGN------ 533 (693)
Q Consensus 473 ~G~~---------d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPV----IgN------ 533 (693)
++.. .-.+...++++....+|.+++.+. + ..+..+++..+.+.++ |+-
T Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~----------~---~e~~~ir~~~g~~~~iltPGIg~~~~~gd 193 (240)
T COG0284 127 MGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCS----------A---EEVAAIREILGPDFLILTPGIGAGSQGGD 193 (240)
T ss_pred chhhhhhhccccchHHHHHHHHHHHhccCCceEEEcC----------H---HHHHHHHHhcCCCcEEECCCcCcCcCCCC
Confidence 2221 012356667777777888888753 2 2334444443212232 222
Q ss_pred -CCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 534 -GDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 534 -GdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
+++.++.++.. .|+|.+.|||+++..+.
T Consensus 194 Q~~~~t~~~A~~-----~Gad~ivVGR~I~~a~~ 222 (240)
T COG0284 194 QGRVMTPGEAVR-----AGADYIVVGRPITQAGD 222 (240)
T ss_pred cccccCHHHHHh-----cCCCEEEEChhhhcCCC
Confidence 45666666643 58999999999998754
|
|
| >COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.09 E-value=0.87 Score=48.89 Aligned_cols=57 Identities=26% Similarity=0.539 Sum_probs=47.1
Q ss_pred ccccCChhhhccCCCCCCCCCCCCCCCCChhhhhhcCCCCCCCCCCCcCcccccCCCCCcccccCc
Q 005508 99 SASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTH 164 (693)
Q Consensus 99 ~~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~~yl~~K~~di~~~Cp~f~~~G~Cp~G~~CRF~~sH 164 (693)
...-.|..|..+ .|+-|+.|-|+|+.. -.+ + ....|.+|...|.|..|..|.+..-|
T Consensus 102 ~s~V~c~~~~~g----~c~s~~~c~~lh~~d---~~~-s-~~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 102 SSSVVCKFFLRG----LCKSGFSCEFLHEYD---LRS-S-QGPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred cCCcccchhccc----cCcCCCccccccCCC---ccc-c-cCCCcccccccceeccCCCCCccccC
Confidence 456789999887 699999999999876 112 2 56789999999999999999987766
|
|
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=83.98 E-value=8.3 Score=39.49 Aligned_cols=92 Identities=10% Similarity=0.100 Sum_probs=69.0
Q ss_pred HHHHHHhcccc--ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceE
Q 005508 453 KGIIEATSGTV--DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQV 530 (693)
Q Consensus 453 ~eIV~av~~~v--~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPV 530 (693)
.+.|+++++.+ ++.+.+-...+|+ .+++.++++.|.+.++.+|- |-. .+.||+..+++++.. .+||
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~--~~~a~~~~~~l~~~~i~~iE-------eP~-~~~d~~~~~~L~~~~--~~pI 148 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWT--PKEAIRLIRALEKYGLAWIE-------EPC-APDDLEGYAALRRRT--GIPI 148 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCC--HHHHHHHHHHhhhcCCCeEE-------CCC-CccCHHHHHHHHhhC--CCCE
Confidence 67778888776 4566666666664 57899999999988877773 332 335788888998877 6999
Q ss_pred EEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 531 LGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 531 IgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
.+.=.+.+..+...++.. ..+|.|.+
T Consensus 149 a~dEs~~~~~~~~~~~~~-~~~d~~~~ 174 (229)
T cd00308 149 AADESVTTVDDALEALEL-GAVDILQI 174 (229)
T ss_pred EeCCCCCCHHHHHHHHHc-CCCCEEec
Confidence 986668899999887776 67888764
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=83.98 E-value=54 Score=33.59 Aligned_cols=176 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred CCCCCcHHHHHHHHHcCCCEEEecccccchhccCChhhhh--hhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcE
Q 005508 347 LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA--LLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDF 424 (693)
Q Consensus 347 Mt~v~dlpFRrl~~~~Gadl~~TEM~~a~~ll~g~~~e~~--ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~ 424 (693)
+.|.++.-=-++|.++|||++ .++....--+.-..+.+ +.+.-+.....+.=+...+++.+.+.++ .+++|.
T Consensus 5 ICGit~~eda~~~~~~GaD~i--GfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~----~~~~d~ 78 (207)
T PRK13958 5 FCGFTTIKDVTAASQLPIDAI--GFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILS----NTSINT 78 (207)
T ss_pred EcCCCcHHHHHHHHHcCCCEE--EEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHH----hCCCCE
Q ss_pred EEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEeccc
Q 005508 425 IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRT 503 (693)
Q Consensus 425 IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRt 503 (693)
|.||..-+. +.++.++... .+++.--++.+ ......+...... ++++-+....
T Consensus 79 vQLHG~e~~--------------------~~~~~l~~~~~~~~iika~~~~-----~~~~~~~~~~~~~-~d~~LlDs~~ 132 (207)
T PRK13958 79 IQLHGTESI--------------------DFIQEIKKKYSSIKIIKALPAD-----ENIIQNINKYKGF-VDLFIIDTPS 132 (207)
T ss_pred EEECCCCCH--------------------HHHHHHhhcCCCceEEEEeccc-----HHHHHHHHHHHhh-CCEEEEcCCC
Q ss_pred ccCccCCCc-cHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHh-cCCCcCEEEEcHHH
Q 005508 504 RQQRYSKLA-DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS-DCPELASCMIARGA 561 (693)
Q Consensus 504 r~q~ytg~A-dw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~-~~~gaDgVMIGRga 561 (693)
...+-+|.. ||+.+..+ . ..|+|..||| +++.+.+++. . .+..||=+..|.
T Consensus 133 ~~~GGtG~~~dw~~~~~~---~--~~p~iLAGGL-~peNV~~a~~~~-~~p~gVDvsSGV 185 (207)
T PRK13958 133 VSYGGTGQTYDWTILKHI---K--DIPYLIAGGI-NSENIQTVEQLK-LSHQGYDIASGI 185 (207)
T ss_pred CCCCcCCcEeChHHhhhc---c--CCCEEEECCC-CHHHHHHHHhcC-CCCCEEEccccc
|
|
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=83.98 E-value=19 Score=37.94 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=75.1
Q ss_pred cCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHH
Q 005508 438 NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYI 517 (693)
Q Consensus 438 k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I 517 (693)
+...|-.+..+.+++.++++.+++ .++.|++=|-+. .+-++...+.|++.|-+|...-...+........+
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~-~gI~VSLFiDP~--------~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el 168 (237)
T TIGR00559 98 TTEGGLDVARLKDKLCELVKRFHA-AGIEVSLFIDAD--------KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEEL 168 (237)
T ss_pred cCCcCchhhhCHHHHHHHHHHHHH-CCCEEEEEeCCC--------HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHH
Confidence 345677788899999999999965 477777765541 23455667789999999976533333221111122
Q ss_pred HHHH------HHcCCCceEEEeCCCCCHHHHHHHHhcCCC-cCEEEEcHHHhhCC
Q 005508 518 YQCA------RKASDDLQVLGNGDIYSYLDWNKHKSDCPE-LASCMIARGALIKP 565 (693)
Q Consensus 518 ~~i~------~~~~~~IPVIgNGdI~s~eDa~~~l~~~~g-aDgVMIGRgaL~nP 565 (693)
.+++ ... ++-|-+..|+ +++.+..+... .+ .+-|-||..++.+-
T Consensus 169 ~~i~~aa~~A~~l--GL~VnAGHgL-ny~Nv~~i~~~-~~~i~EvnIGHsiia~A 219 (237)
T TIGR00559 169 QRIVKASVHAHSL--GLKVNAGHGL-NYHNVKYFAEI-LPYLDELNIGHAIIADA 219 (237)
T ss_pred HHHHHHHHHHHHc--CCEEecCCCC-CHHhHHHHHhC-CCCceEEecCHHHHHHH
Confidence 2222 233 4777776776 78888776554 45 89999999887654
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=83.88 E-value=8.6 Score=41.75 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCC
Q 005508 448 KPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDD 527 (693)
Q Consensus 448 rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~ 527 (693)
.++.+.+-|+.+++.++.|+.|-+..-. +...+.++.+.+.|++.|.+++.. . .+++.++++. .
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~----~~~~~~~~~~~~~~v~~v~~~~g~--------p-~~~i~~lk~~---g 109 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLS----PFVDELVDLVIEEKVPVVTTGAGN--------P-GKYIPRLKEN---G 109 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCC----CCHHHHHHHHHhCCCCEEEEcCCC--------c-HHHHHHHHHc---C
Confidence 5888999999999888899988765421 234567777888999999886431 1 3578888875 4
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 528 LQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 528 IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
+.|++ +|.|.+.+.++.+ .|+|.|.+
T Consensus 110 ~~v~~--~v~s~~~a~~a~~--~GaD~Ivv 135 (307)
T TIGR03151 110 VKVIP--VVASVALAKRMEK--AGADAVIA 135 (307)
T ss_pred CEEEE--EcCCHHHHHHHHH--cCCCEEEE
Confidence 78874 8899999988665 69999986
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=83.78 E-value=4 Score=43.31 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
.+..++++.++++|+++|.|-.- ...|.| .++++..+++.+ ++||...-=|.++..+.+... .|||+|.+=-
T Consensus 68 ~d~~~~a~~y~~~GA~aiSVlTe--~~~F~G--s~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~--~GADaVLLI~ 139 (254)
T PF00218_consen 68 FDPAEIAKAYEEAGAAAISVLTE--PKFFGG--SLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARA--AGADAVLLIA 139 (254)
T ss_dssp -SHHHHHHHHHHTT-SEEEEE----SCCCHH--HHHHHHHHHHHS--SS-EEEES---SHHHHHHHHH--TT-SEEEEEG
T ss_pred CCHHHHHHHHHhcCCCEEEEECC--CCCCCC--CHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHH--cCCCEeehhH
Confidence 46789999999999999999732 223333 678999999998 799999999999999998876 6999997665
Q ss_pred HHhhC
Q 005508 560 GALIK 564 (693)
Q Consensus 560 gaL~n 564 (693)
++|.+
T Consensus 140 ~~L~~ 144 (254)
T PF00218_consen 140 AILSD 144 (254)
T ss_dssp GGSGH
T ss_pred HhCCH
Confidence 55554
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=83.74 E-value=4.3 Score=38.89 Aligned_cols=91 Identities=15% Similarity=0.068 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHH----HHhcCCCcCEE
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK----HKSDCPELASC 555 (693)
Q Consensus 480 ~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~----~l~~~~gaDgV 555 (693)
....++++.+.+.|+++|.+..+...........+..+..+.... ++|++++.-+.+..++.. .+.. .|+|+|
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~-~g~d~v 88 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARA-AGADGV 88 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHH-cCCCEE
Confidence 356889999999999999987765444433333334567777766 689999988877776542 3444 699999
Q ss_pred EEcHHHhh----CCCchhHHHh
Q 005508 556 MIARGALI----KPWIFTEIKE 573 (693)
Q Consensus 556 MIGRgaL~----nPwiF~eIke 573 (693)
.|.=+... -+.++.++++
T Consensus 89 ~l~~~~~~~~~~~~~~~~~i~~ 110 (200)
T cd04722 89 EIHGAVGYLAREDLELIRELRE 110 (200)
T ss_pred EEeccCCcHHHHHHHHHHHHHH
Confidence 98855532 2335555554
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=83.67 E-value=4.5 Score=44.85 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 512 ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 512 Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
..|+.|+.+++.. ++|||.=|= .+.+|+..+.+ .|||+|.|+
T Consensus 212 ~~w~~i~~~~~~~--~~pvivKgv-~~~~da~~~~~--~G~~~i~vs 253 (356)
T PF01070_consen 212 LTWDDIEWIRKQW--KLPVIVKGV-LSPEDAKRAVD--AGVDGIDVS 253 (356)
T ss_dssp -SHHHHHHHHHHC--SSEEEEEEE--SHHHHHHHHH--TT-SEEEEE
T ss_pred CCHHHHHHHhccc--CCceEEEec-ccHHHHHHHHh--cCCCEEEec
Confidence 4799999999998 799998774 89999999776 699999886
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.49 E-value=12 Score=40.00 Aligned_cols=140 Identities=6% Similarity=-0.025 Sum_probs=80.0
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHHHHH
Q 005508 411 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG 490 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~~L~ 490 (693)
+.++.+. ++|+|.+.+|.-.- ...+.+-..+ .+++...+.++.+++ .+++++.-+=.|.-++.++..+++..|.
T Consensus 103 e~l~~Lk-~aGld~~~~~lEt~-~~~~~~i~~~---~~~~~~l~~i~~a~~-~Gi~v~sg~I~GlGEt~ed~~~~l~~lr 176 (279)
T PRK08508 103 EQLKELK-KAGIFSYNHNLETS-KEFFPKICTT---HTWEERFQTCENAKE-AGLGLCSGGIFGLGESWEDRISFLKSLA 176 (279)
T ss_pred HHHHHHH-HcCCCEEcccccch-HHHhcCCCCC---CCHHHHHHHHHHHHH-cCCeecceeEEecCCCHHHHHHHHHHHH
Confidence 4455565 68999999886431 2222211110 244555555555543 4677766555666677888999999999
Q ss_pred HcCCCEEEEecccccCcc----CCCccHHHHHHH---HHHcCCCceEEEeCCC-CCHHHHHHHHhcCCCcCEEEEc
Q 005508 491 TWGASAVTVHGRTRQQRY----SKLADWDYIYQC---ARKASDDLQVLGNGDI-YSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 491 eaG~daItVHgRtr~q~y----tg~Adw~~I~~i---~~~~~~~IPVIgNGdI-~s~eDa~~~l~~~~gaDgVMIG 558 (693)
+.+.+.|-+|--....++ .....+++++-+ +-..| +.-|-..||- ....+....... .||+++|+|
T Consensus 177 ~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp-~~~i~~~~gr~~~~~~~~~~~~~-~g~n~~~~g 250 (279)
T PRK08508 177 SLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALP-NARLMVAGGREVVFGERQYEIFE-AGANAIVIG 250 (279)
T ss_pred cCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CceeeecCChhhhchhhHHHHHh-cCCcceeec
Confidence 999998888642221111 111223333332 22344 4455556655 334455544444 799999998
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.14 E-value=20 Score=38.58 Aligned_cols=138 Identities=12% Similarity=0.037 Sum_probs=73.2
Q ss_pred HHHHHHhhhCCCcEEEEcC-------CCCCcccccCCccccccCC-------hHHHHHHHHHhccc---cccCEEEEecC
Q 005508 411 RTVELIDQQCTVDFIDINM-------GCPIDIVVNKGAGSCLLTK-------PMRMKGIIEATSGT---VDKPITIKVRT 473 (693)
Q Consensus 411 ~AA~~~~~~aG~D~IDLN~-------GCP~~~v~k~G~GsaLl~r-------p~~l~eIV~av~~~---v~iPVtVKiR~ 473 (693)
+....+. ..|+-+|.+-- |-|.+.+.+.. .++++. .+...+-++.+++. .+.||.+=|-.
T Consensus 24 e~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~--~~~~N~~G~~n~g~~~~~~~i~~~~~~~~~~~~pvivsi~g 100 (294)
T cd04741 24 EDLLELA-ASSTGAVTTRSSTLAGRPGNPEPRYYAFP--LGSINSLGLPNLGLDYYLEYIRTISDGLPGSAKPFFISVTG 100 (294)
T ss_pred HHHHHHH-HcCCcEEEeCcccCCCCCCCCCCcEEecC--ccccccccCCCcCHHHHHHHHHHHhhhccccCCeEEEECCC
Confidence 3344444 35888888852 44444444332 223443 34444444444443 47898885532
Q ss_pred CCCCChhHHHHHHHHHHHc---CCCEEEEeccccc--CccCCCccHH----HHHHHHHHcCCCceEEE----eCCCCCHH
Q 005508 474 GYFEGKNRIDSLIADIGTW---GASAVTVHGRTRQ--QRYSKLADWD----YIYQCARKASDDLQVLG----NGDIYSYL 540 (693)
Q Consensus 474 G~~d~~~~~~~la~~L~ea---G~daItVHgRtr~--q~ytg~Adw~----~I~~i~~~~~~~IPVIg----NGdI~s~e 540 (693)
. .++..++++.+++. |+|+|.|--.... ..-.-..+.+ .++.+++.+ ++||+. +-|+.+..
T Consensus 101 --~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~--~iPv~vKl~p~~~~~~~~ 174 (294)
T cd04741 101 --S--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY--SIPVGVKTPPYTDPAQFD 174 (294)
T ss_pred --C--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCHHHHH
Confidence 2 56788888888875 7999998432211 0000112344 445555555 588774 22322333
Q ss_pred HHHHHHhcCC-CcCEEEE
Q 005508 541 DWNKHKSDCP-ELASCMI 557 (693)
Q Consensus 541 Da~~~l~~~~-gaDgVMI 557 (693)
++.+.+...+ |+|+|.+
T Consensus 175 ~~a~~l~~~~~G~~gi~~ 192 (294)
T cd04741 175 TLAEALNAFACPISFITA 192 (294)
T ss_pred HHHHHHhccccCCcEEEE
Confidence 4444444522 8998875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=83.09 E-value=71 Score=34.28 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=90.6
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEe
Q 005508 392 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 392 ~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKi 471 (693)
....|+++++.+ +.++..+.|+.+. .+|+|+|=+- -|.-. --..+-+.+-.+.|.+++++||.+--
T Consensus 72 ~g~~pvi~gv~~-~t~~ai~~a~~a~-~~Gadav~~~--pP~y~----------~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 72 KGKVPVYTGVGG-NTSDAIEIARLAE-KAGADGYLLL--PPYLI----------NGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred CCCCcEEEecCc-cHHHHHHHHHHHH-HhCCCEEEEC--CCCCC----------CCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 345688999965 6888888888887 6899999773 34321 11346667777777777899999877
Q ss_pred cCCCCCChhHHHHHHHHHHH--cCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcC
Q 005508 472 RTGYFEGKNRIDSLIADIGT--WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDC 549 (693)
Q Consensus 472 R~G~~d~~~~~~~la~~L~e--aG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~ 549 (693)
|+|..-. .+++.+|.+ -.+.+|-- + ..|+..+.++.+..+.++.|+...|..+. .+...+.
T Consensus 138 ~~g~~l~----~~~~~~La~~~~nvvgiKd---------s-~~d~~~~~~~~~~~~~~~~v~~G~~~~d~-~~~~~~~-- 200 (296)
T TIGR03249 138 RDNAVLN----ADTLERLADRCPNLVGFKD---------G-IGDMEQMIEITQRLGDRLGYLGGMPTAEV-TAPAYLP-- 200 (296)
T ss_pred CCCCCCC----HHHHHHHHhhCCCEEEEEe---------C-CCCHHHHHHHHHHcCCCeEEEeCCCcchh-hHHHHHh--
Confidence 7775332 344444433 23333321 1 24777788887766434544433233221 1233344
Q ss_pred CCcCEEEEcHHHhhCCCchhHHHh
Q 005508 550 PELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 550 ~gaDgVMIGRgaL~nPwiF~eIke 573 (693)
.|++|++.|-+-+ -|.++.++-+
T Consensus 201 ~Ga~G~is~~~n~-~P~~~~~~~~ 223 (296)
T TIGR03249 201 LGVTSYSSAIFNF-IPHIARAFYE 223 (296)
T ss_pred CCCCEEEecHHHh-hHHHHHHHHH
Confidence 4899999885443 4766655543
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=83.05 E-value=25 Score=39.26 Aligned_cols=150 Identities=14% Similarity=0.114 Sum_probs=87.0
Q ss_pred hhhhhhhccCCCCeEEEEec----CCCHHHHHHHHHHHhhhCCCcEEEEc--CCCCCcccccCCccccccCChHHHHHHH
Q 005508 383 SEWALLRRHSSEDLFGVQIC----GAYPDTLARTVELIDQQCTVDFIDIN--MGCPIDIVVNKGAGSCLLTKPMRMKGII 456 (693)
Q Consensus 383 ~e~~ll~~h~~e~p~gvQL~----G~~pe~~~~AA~~~~~~aG~D~IDLN--~GCP~~~v~k~G~GsaLl~rp~~l~eIV 456 (693)
..++++..+ ++|+++-++ |-+++.+++.+..+. ..|+|+|=.. +|-+. =..+.+|.+.+.+.+
T Consensus 120 g~R~~~gv~--~rPli~Ti~kp~~gld~~~la~~~~~l~-~gGvD~Ikdde~~ge~~--------~~~~eER~~~v~~av 188 (367)
T cd08205 120 GLRRLLGVH--DRPLLGTIIKPSIGLSPEELAELAYELA-LGGIDLIKDDELLADQP--------YAPFEERVRACMEAV 188 (367)
T ss_pred hHHHHhCCC--CCCeeeeeeCCCCCCCHHHHHHHHHHHH-hcCCCeeeccccccCcc--------cCCHHHHHHHHHHHH
Confidence 345555443 567766654 567999999999887 5799998442 22111 112334556666666
Q ss_pred HHhcccc-ccC-EEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEe-
Q 005508 457 EATSGTV-DKP-ITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGN- 533 (693)
Q Consensus 457 ~av~~~v-~iP-VtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgN- 533 (693)
+.+.+.+ ..+ +.+-+. ....++.+.++.++++|+++|-|-.= +.+ +..+..+++.. ++||++-
T Consensus 189 ~~a~~~TG~~~~y~~nit----~~~~e~i~~a~~a~~~Gad~vmv~~~-----~~g---~~~~~~l~~~~--~lpi~~H~ 254 (367)
T cd08205 189 RRANEETGRKTLYAPNIT----GDPDELRRRADRAVEAGANALLINPN-----LVG---LDALRALAEDP--DLPIMAHP 254 (367)
T ss_pred HHHHHhhCCcceEEEEcC----CCHHHHHHHHHHHHHcCCCEEEEecc-----ccc---ccHHHHHHhcC--CCeEEEcc
Confidence 6666555 333 333222 23478899999999999999988532 112 22344444443 4666531
Q ss_pred ---CC-------CCCHHHHHHHHhcCCCcCEEEEc
Q 005508 534 ---GD-------IYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 534 ---Gd-------I~s~eDa~~~l~~~~gaDgVMIG 558 (693)
|- +.+..-+-++... .|+|.+.++
T Consensus 255 a~~ga~~~~~~~g~~~~~~~kl~Rl-aGad~~~~~ 288 (367)
T cd08205 255 AFAGALSRSPDYGSHFLLLGKLMRL-AGADAVIFP 288 (367)
T ss_pred CcccccccCCCCcCCHHHHHHHHHH-cCCCccccC
Confidence 11 2344444444443 678877654
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.91 E-value=28 Score=38.66 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCCEEEEecccccCccCC---C----ccHHHHHHHHHHcCCCceEEEeCCCCCHHHH
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRYSK---L----ADWDYIYQCARKASDDLQVLGNGDIYSYLDW 542 (693)
Q Consensus 482 ~~~la~~L~eaG~daItVHgRtr~q~ytg---~----Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa 542 (693)
..+....+++.|+|+|.+.-.|..+.|.+ + .+|+.+++|++.++ ++|++.-|+=-.+.++
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~ 241 (347)
T PRK13399 175 PDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQEL 241 (347)
T ss_pred HHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHH
Confidence 44455556678999998877776677754 2 68999999999984 5999999987666443
|
|
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=82.77 E-value=34 Score=38.24 Aligned_cols=149 Identities=14% Similarity=0.051 Sum_probs=90.3
Q ss_pred hhhhhhhccCCCCeEEEEe---cCCCHHHHHHHHHHHhhhCCCcEEEE--cCCCCCcccccCCccccccCChHHHHHHHH
Q 005508 383 SEWALLRRHSSEDLFGVQI---CGAYPDTLARTVELIDQQCTVDFIDI--NMGCPIDIVVNKGAGSCLLTKPMRMKGIIE 457 (693)
Q Consensus 383 ~e~~ll~~h~~e~p~gvQL---~G~~pe~~~~AA~~~~~~aG~D~IDL--N~GCP~~~v~k~G~GsaLl~rp~~l~eIV~ 457 (693)
..++++..+ ++|+..-+ .|-+++.+++.+..+. ..|+|+|-. |+|.+.- +.+.+|-+.+.+.++
T Consensus 116 g~R~~lgv~--~rPl~~tiiKP~GL~~~~~a~~~~~~~-~gGvD~IKdDe~l~~~~~--------~p~~eRv~~v~~av~ 184 (364)
T cd08210 116 GLRALLGIP--ERPLLCSALKPQGLSAAELAELAYAFA-LGGIDIIKDDHGLADQPF--------APFEERVKACQEAVA 184 (364)
T ss_pred HHHHHhCCC--CCceEEEEeccccCCHHHHHHHHHHHH-hcCCCeeecCccccCccC--------CCHHHHHHHHHHHHH
Confidence 345555443 56664333 2889999999998887 579999933 3332211 122345555666666
Q ss_pred Hhccccc--cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCC-ceEEEe-
Q 005508 458 ATSGTVD--KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDD-LQVLGN- 533 (693)
Q Consensus 458 av~~~v~--iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~-IPVIgN- 533 (693)
.+.+.++ +++.+=|.- ...+..+.++.++++|++++-|..- ..-|+.+..+++.. . +||.+-
T Consensus 185 ~a~~eTG~~~~y~~Nita----~~~em~~ra~~a~~~Ga~~vMv~~~--------~~G~~~~~~l~~~~--~~l~i~aHr 250 (364)
T cd08210 185 EANAETGGRTLYAPNVTG----PPTQLLERARFAKEAGAGGVLIAPG--------LTGLDTFRELAEDF--DFLPILAHP 250 (364)
T ss_pred HHHhhcCCcceEEEecCC----CHHHHHHHHHHHHHcCCCEEEeecc--------cchHHHHHHHHhcC--CCcEEEEcc
Confidence 6665553 456554432 3458888999999999999987521 23356666777654 5 787765
Q ss_pred ---CCC------CCHH-HHHHHHhcCCCcCEEEE
Q 005508 534 ---GDI------YSYL-DWNKHKSDCPELASCMI 557 (693)
Q Consensus 534 ---GdI------~s~e-Da~~~l~~~~gaDgVMI 557 (693)
|-+ .|+. -+.++.. ..|+|.+++
T Consensus 251 a~~ga~~~~~~~is~~~~~~kl~R-laGad~~~~ 283 (364)
T cd08210 251 AFAGAFVSSGDGISHALLFGTLFR-LAGADAVIF 283 (364)
T ss_pred ccccccccCCCcccHHHHHHHHHH-HhCCCEEEe
Confidence 221 3332 2344333 378998754
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=82.66 E-value=13 Score=40.31 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=45.3
Q ss_pred HHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcH
Q 005508 485 LIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 485 la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGR 559 (693)
-+..+.++|+|.|-+..-+ .+-++++.+.+..++.+.++|+| +.+.+.++.. +|+|.+.+|.
T Consensus 209 ea~~a~~agaDiImLDnms----------pe~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~--tGVD~Is~ga 270 (290)
T PRK06559 209 AAEEAAAAGADIIMLDNMS----------LEQIEQAITLIAGRSRIECSGNI-DMTTISRFRG--LAIDYVSSGS 270 (290)
T ss_pred HHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhcCceEEEEECCC-CHHHHHHHHh--cCCCEEEeCc
Confidence 3444557999999886432 34455555554446889999999 7888888654 7999999996
|
|
| >cd00740 MeTr MeTr subgroup of pterin binding enzymes | Back alignment and domain information |
|---|
Probab=82.61 E-value=9.8 Score=40.23 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccccCEEEEec
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 404 ~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR 472 (693)
.+++...+-|.... +.|+|.||||++ |. .....+.+.+++..+...+++||+|-..
T Consensus 23 ~~~d~~~~~A~~~~-~~GAdiIDIG~~-~~-----------~~~~~ee~~r~v~~i~~~~~~piSIDT~ 78 (252)
T cd00740 23 EDYDEALDVARQQV-EGGAQILDLNVD-YG-----------GLDGVSAMKWLLNLLATEPTVPLMLDST 78 (252)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCC-CC-----------CCCHHHHHHHHHHHHHHhcCCcEEeeCC
Confidence 56677777676665 469999999975 21 1233556777777777667899988443
|
This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=82.56 E-value=43 Score=34.51 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=83.6
Q ss_pred hhhhhccCCCCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhccccc
Q 005508 385 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVD 464 (693)
Q Consensus 385 ~~ll~~h~~e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v~ 464 (693)
.+.++.+-.+.++.+-|--.++..+..-+ +. ++|+|.|-+|..+. .+-+.+.++++++ .+
T Consensus 47 i~~lk~~~~~~~v~~DLK~~Di~~~v~~~--~~-~~Gad~vTvH~~a~----------------~~~i~~~~~~~~~-~g 106 (216)
T PRK13306 47 VRVLRALYPDKIIVADTKIADAGKILAKM--AF-EAGADWVTVICAAH----------------IPTIKAALKVAKE-FN 106 (216)
T ss_pred HHHHHHHCCCCEEEEEEeecCCcHHHHHH--HH-HCCCCEEEEeCCCC----------------HHHHHHHHHHHHH-cC
Confidence 33344443455677777777776554433 33 57999999985322 3345556665543 23
Q ss_pred cCEEEEecCCCCCChhHHHHHHHHHHHcCCCEEEEecccccCccCC----CccHHHHHHHHHHcCCCceEEEeCCCCCHH
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSK----LADWDYIYQCARKASDDLQVLGNGDIYSYL 540 (693)
Q Consensus 465 iPVtVKiR~G~~d~~~~~~~la~~L~eaG~daItVHgRtr~q~ytg----~Adw~~I~~i~~~~~~~IPVIgNGdI~s~e 540 (693)
.-+.|=+-+++. .+ .+ +.+.+.|++-+.+|--...| ..| +...+.|+++.. .+.-+...|||. ++
T Consensus 107 ~~~~V~llts~~--~~---~l-~~~~~~~~~~~vl~~a~~~~-~~G~v~s~~~~~~ir~~~~---~~~~i~V~gGI~-~~ 175 (216)
T PRK13306 107 GEIQIELYGNWT--WE---QA-QQWRDAGISQVIYHRSRDAQ-LAGVAWGEKDLNKVKKLSD---MGFKVSVTGGLV-VE 175 (216)
T ss_pred CEEEEEECCCCC--HH---HH-HHHHcCChhhhhhhhhhhhh-hcCCCCCHHHHHHHHHHhc---CCCeEEEcCCCC-Hh
Confidence 333333344331 11 22 34556677777776433222 222 123334444433 244588999995 45
Q ss_pred HHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 541 DWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 541 Da~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
.+... .+ .++|.+.+||++...++
T Consensus 176 ~~~~~-~~-~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 176 DLKLF-KG-IPVKTFIAGRAIRGAAD 199 (216)
T ss_pred hHHHH-hc-CCCCEEEECCcccCCCC
Confidence 55443 44 48999999999887776
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=82.28 E-value=23 Score=36.55 Aligned_cols=138 Identities=18% Similarity=0.165 Sum_probs=80.6
Q ss_pred EEecCC--CHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEecCCC
Q 005508 399 VQICGA--YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY 475 (693)
Q Consensus 399 vQL~G~--~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR~G~ 475 (693)
.|..+. +.++..+.++.+. .+|++.||+-.+.|.+.+ -++.+ ..++++.+++.. +.++.+=+|.+
T Consensus 9 ~q~~~~~~s~e~~~~i~~~L~-~~GV~~IEvg~~~~~~~~-------p~~~~---~~~~i~~l~~~~~~~~~~~l~~~~- 76 (265)
T cd03174 9 LQSEGATFSTEDKLEIAEALD-EAGVDSIEVGSGASPKAV-------PQMED---DWEVLRAIRKLVPNVKLQALVRNR- 76 (265)
T ss_pred ccCCCCCCCHHHHHHHHHHHH-HcCCCEEEeccCcCcccc-------ccCCC---HHHHHHHHHhccCCcEEEEEccCc-
Confidence 344443 5788888888887 689999999877765433 23333 345566665554 55665545543
Q ss_pred CCChhHHHHHHHHHHHcCCCEEEEecccccC----ccCCCc--c----HHHHHHHHHHcCCCceEEEeC-CCCC----HH
Q 005508 476 FEGKNRIDSLIADIGTWGASAVTVHGRTRQQ----RYSKLA--D----WDYIYQCARKASDDLQVLGNG-DIYS----YL 540 (693)
Q Consensus 476 ~d~~~~~~~la~~L~eaG~daItVHgRtr~q----~ytg~A--d----w~~I~~i~~~~~~~IPVIgNG-dI~s----~e 540 (693)
.+.++.+.++|++.|.+..-.... .+.... . .+.++.+++. .+.|..+- +++. ++
T Consensus 77 -------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~---G~~v~~~~~~~~~~~~~~~ 146 (265)
T cd03174 77 -------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEA---GLEVEGSLEDAFGCKTDPE 146 (265)
T ss_pred -------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC---CCeEEEEEEeecCCCCCHH
Confidence 467888889999999886432210 000111 2 2334444432 46666666 5555 33
Q ss_pred HH---HHHHhcCCCcCEEEEcH
Q 005508 541 DW---NKHKSDCPELASCMIAR 559 (693)
Q Consensus 541 Da---~~~l~~~~gaDgVMIGR 559 (693)
.+ .+.+.+ .|+|.|.+..
T Consensus 147 ~l~~~~~~~~~-~g~~~i~l~D 167 (265)
T cd03174 147 YVLEVAKALEE-AGADEISLKD 167 (265)
T ss_pred HHHHHHHHHHH-cCCCEEEech
Confidence 33 233344 5899988763
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >KOG2494 consensus C3H1-type Zn-finger protein [Transcription] | Back alignment and domain information |
|---|
Probab=82.22 E-value=0.59 Score=50.66 Aligned_cols=57 Identities=19% Similarity=0.488 Sum_probs=39.6
Q ss_pred cccCChhhhccCCCCCCCCCCC-CCCCCChhhhhhcCCCCCCCCCCCcCcccccCCCCCcccccCc
Q 005508 100 ASHLCPEVAKSGDVSSCPYKDK-CRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTH 164 (693)
Q Consensus 100 ~~~LC~~~~~~~~~~~C~~Gd~-Crf~Hd~~~yl~~K~~di~~~Cp~f~~~G~Cp~G~~CRF~~sH 164 (693)
....|+.|.++ .|..||+ |||.|--..-=-++-.- --|.-|. .|.|-.-- |||+..=
T Consensus 36 ~~eVCReF~rn----~C~R~d~~CkfaHP~~~~~V~~g~v--~aC~Ds~-kgrCsR~n-CkylHpp 93 (331)
T KOG2494|consen 36 TLEVCREFLRN----TCSRGDRECKFAHPPKNCQVSNGRV--IACFDSQ-KGRCSREN-CKYLHPP 93 (331)
T ss_pred HHHHHHHHHhc----cccCCCccccccCCCCCCCccCCeE--EEEeccc-cCccCccc-ceecCCC
Confidence 46789999998 7999999 99999543100011111 1587776 88998765 9997653
|
|
| >PLN02489 homocysteine S-methyltransferase | Back alignment and domain information |
|---|
Probab=82.02 E-value=20 Score=39.51 Aligned_cols=116 Identities=21% Similarity=0.170 Sum_probs=68.3
Q ss_pred HcCCCEEEecccccchhccCChhhhhhhhccCCCCeEEEEecCC------CHHHHHHHHHHHhhhCCCcEEEEcCCCCCc
Q 005508 361 VLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGA------YPDTLARTVELIDQQCTVDFIDINMGCPID 434 (693)
Q Consensus 361 ~~Gadl~~TEM~~a~~ll~g~~~e~~ll~~h~~e~p~gvQL~G~------~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~ 434 (693)
+.|+|+++-|.+....-+..- ...++....+.|+.+++.-. +-..+.+++..+....++++|=|||. .
T Consensus 178 ~~gvD~i~~ET~~~l~E~~a~---~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~-~-- 251 (335)
T PLN02489 178 EAGPDLIAFETIPNKLEAQAY---VELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCT-P-- 251 (335)
T ss_pred hCCCCEEEEeccCChHHHHHH---HHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCC-C--
Confidence 458999998876544322211 11223222356777777521 12345566666543347899999993 2
Q ss_pred ccccCCccccccCChHHHHHHHHHhccccccCEEEEecCCCC--C-----------ChhHHHHHHHHHHHcCCCE
Q 005508 435 IVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF--E-----------GKNRIDSLIADIGTWGASA 496 (693)
Q Consensus 435 ~v~k~G~GsaLl~rp~~l~eIV~av~~~v~iPVtVKiR~G~~--d-----------~~~~~~~la~~L~eaG~da 496 (693)
|+.+..+|+.++..+++||.|+=-.|.. . ..+...++++...+.|+..
T Consensus 252 --------------p~~~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~i 312 (335)
T PLN02489 252 --------------PRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASL 312 (335)
T ss_pred --------------HHHHHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcE
Confidence 5667788888888778899998765521 0 1123455555556666643
|
|
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.93 E-value=7.1 Score=40.54 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=59.0
Q ss_pred HHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEcHHHhhCCC
Q 005508 487 ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 487 ~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIGRgaL~nPw 566 (693)
+++.+.|+..|-|..|.-. +-..|+.....+.+..+.++-+++-.||+|++|+...-. .|+.+|.+|-.++..-+
T Consensus 200 ~raleiGakvvGvNNRnL~---sFeVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~--~GV~avLVGEslmk~sD 274 (289)
T KOG4201|consen 200 QRALEIGAKVVGVNNRNLH---SFEVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQK--AGVKAVLVGESLMKQSD 274 (289)
T ss_pred HHHHHhCcEEEeecCCccc---eeeechhhHHHHHhhCccceEEEeccCCCCHHHHHHHHH--cCceEEEecHHHHhccC
Confidence 3344459999999888643 334677778888888777788999999999999988654 69999999999987433
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=81.84 E-value=2 Score=43.10 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHcCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEEc
Q 005508 479 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 479 ~~~~~~la~~L~eaG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMIG 558 (693)
......-.+.+++...|+|-|-+. .--..+.++++.+ ++|||+.|=|.+.+|+.++|. .||++|.-.
T Consensus 103 S~al~~~~~~i~~~~PD~vEilPg---------~~p~vi~~i~~~~--~~PiIAGGLI~~~e~v~~al~--aGa~aVSTS 169 (175)
T PF04309_consen 103 SSALETGIKQIEQSKPDAVEILPG---------VMPKVIKKIREET--NIPIIAGGLIRTKEDVEEALK--AGADAVSTS 169 (175)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEESC---------CHHHHHCCCCCCC--SS-EEEESS--SHHHHHHHCC--TTCEEEEE-
T ss_pred HHHHHHHHHHHhhcCCCEEEEchH---------HHHHHHHHHHHhc--CCCEEeecccCCHHHHHHHHH--cCCEEEEcC
Confidence 344556677788899999988632 1224677777777 699999999999999999987 699999988
Q ss_pred HHHhh
Q 005508 559 RGALI 563 (693)
Q Consensus 559 RgaL~ 563 (693)
.--|+
T Consensus 170 ~~~LW 174 (175)
T PF04309_consen 170 NKELW 174 (175)
T ss_dssp -HHHC
T ss_pred ChHhc
Confidence 77664
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=81.84 E-value=13 Score=39.75 Aligned_cols=123 Identities=18% Similarity=0.176 Sum_probs=73.2
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHhhhCCCcEEEEcCCCCCcccccCCccccccCChHHHHHHHHHhcccc-ccCEEEEec
Q 005508 394 EDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVR 472 (693)
Q Consensus 394 e~p~gvQL~G~~pe~~~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl~rp~~l~eIV~av~~~v-~iPVtVKiR 472 (693)
+.++ +.|...+. -.|.++. .+|+|.|=+ |=...++. .|+.+.+--..+.+...+++|++.. +.-|.+-+-
T Consensus 15 g~ki-~~lTaYD~----~~A~~~d-~agvD~iLV--GDSlgmv~-~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmP 85 (261)
T PF02548_consen 15 GEKI-VMLTAYDY----PSARIAD-EAGVDIILV--GDSLGMVV-LGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMP 85 (261)
T ss_dssp T--E-EEEE--SH----HHHHHHH-HTT-SEEEE---TTHHHHT-T--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--
T ss_pred CCcE-EEEecccH----HHHHHHH-HcCCCEEEe--CCcHHHhe-eCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCC
Confidence 4443 57777665 3445554 689999876 43333332 4666777777888888899998877 445666676
Q ss_pred CCCC-CChhHHHHHHHHHHH-cCCCEEEEecccccCccCCCccHHHHHHHHHHcCCCceEEEeCCC
Q 005508 473 TGYF-EGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDI 536 (693)
Q Consensus 473 ~G~~-d~~~~~~~la~~L~e-aG~daItVHgRtr~q~ytg~Adw~~I~~i~~~~~~~IPVIgNGdI 536 (693)
.+.. .+.+.+++-|.+|.. +|+|+|-+-|.. ...+.|+.+.+. .|||+|-=|+
T Consensus 86 f~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~--------~~~~~i~~l~~~---GIPV~gHiGL 140 (261)
T PF02548_consen 86 FGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA--------EIAETIKALVDA---GIPVMGHIGL 140 (261)
T ss_dssp TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG--------GGHHHHHHHHHT---T--EEEEEES
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEeccch--------hHHHHHHHHHHC---CCcEEEEecC
Confidence 6655 567788888877755 999999998753 234667777765 5999986554
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.63 E-value=29 Score=38.31 Aligned_cols=144 Identities=10% Similarity=0.036 Sum_probs=77.5
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCcccccCCcccccc--CChHHHHHHHHHhccccccCEEEEecCCCCCChhHHHHHHH
Q 005508 410 ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLL--TKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIA 487 (693)
Q Consensus 410 ~~AA~~~~~~aG~D~IDLN~GCP~~~v~k~G~GsaLl--~rp~~l~eIV~av~~~v~iPVtVKiR~G~~d~~~~~~~la~ 487 (693)
.+.++.+. ++|+|.+.+|+=. .+ +.+..+. ...+...++++.+.+ .++++..-+=.|.-+..++..+++.
T Consensus 136 ~e~l~~Lk-eAGld~~n~~leT-~p-----~~f~~I~~~~~~~~rl~~i~~a~~-~G~~v~sg~i~GlgEt~ed~v~~~~ 207 (345)
T PRK15108 136 ESQAQRLA-NAGLDYYNHNLDT-SP-----EFYGNIITTRTYQERLDTLEKVRD-AGIKVCSGGIVGLGETVKDRAGLLL 207 (345)
T ss_pred HHHHHHHH-HcCCCEEeecccc-Ch-----HhcCCCCCCCCHHHHHHHHHHHHH-cCCceeeEEEEeCCCCHHHHHHHHH
Confidence 34455566 6899999998744 22 1222221 133344444444432 3666666555566677788899999
Q ss_pred HHHHc--CCCEEEEec-----ccccCccCCCccHHHHHHHH---HHcCCCceEEEeCCCCCHHHHHHHHhcCCCcCEEEE
Q 005508 488 DIGTW--GASAVTVHG-----RTRQQRYSKLADWDYIYQCA---RKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 488 ~L~ea--G~daItVHg-----Rtr~q~ytg~Adw~~I~~i~---~~~~~~IPVIgNGdI~s~eDa~~~l~~~~gaDgVMI 557 (693)
.|.+. .++.|.+.- .|.-........+++++.++ =..|..+.-|..|-..-..+....... .||+++|+
T Consensus 208 ~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~-~Gan~~~~ 286 (345)
T PRK15108 208 QLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFM-AGANSIFY 286 (345)
T ss_pred HHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhChhhHHHHHH-cCCcEEEE
Confidence 99888 566666532 22211111112344444333 334522444555553333444333333 79999999
Q ss_pred cHHHh
Q 005508 558 ARGAL 562 (693)
Q Consensus 558 GRgaL 562 (693)
|==+|
T Consensus 287 g~~~l 291 (345)
T PRK15108 287 GCKLL 291 (345)
T ss_pred CCccc
Confidence 94344
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 693 | ||||
| 1vhn_A | 318 | Crystal Structure Of A Putative Flavin Oxidoreducta | 2e-19 | ||
| 3b0p_A | 350 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 5e-10 | ||
| 3b0v_C | 363 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 2e-08 |
| >pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With Flavin Length = 318 | Back alignment and structure |
|
| >pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350 | Back alignment and structure |
|
| >pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In Complex With Trna Length = 363 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 2e-65
Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 37/290 (12%)
Query: 336 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 395
+ K+ LAP+ + FR + GAD EM L LL E
Sbjct: 1 MSLEVKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLP-QPHER 59
Query: 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455
VQI G+ P+ L+ ++ ++ +ID+N GCP+ VV +GAG LL + I
Sbjct: 60 NVAVQIFGSEPNELSEAARILSEKY--KWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYI 117
Query: 456 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG-TWGASAVTVHGRTRQQRYSKLADW 514
+ +V ++K R G +E + I I G V +H RT Q ++ A+W
Sbjct: 118 VRELRKSVSGKFSVKTRLG-WEKNEVEE--IYRILVEEGVDEVFIHTRTVVQSFTGRAEW 174
Query: 515 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS-------C---MIARGALIK 564
+ + +GDI++ PE A C ++ARGA+ +
Sbjct: 175 KAL----SVLEKRIPTFVSGDIFT-----------PEDAKRALEESGCDGLLVARGAIGR 219
Query: 565 PWIFTEIKE----QRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTR 610
PWIF +IK+ ++ + + E L + ++ G ++K V R
Sbjct: 220 PWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKG-ERKAVVEMR 268
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 16/253 (6%)
Query: 370 EMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINM 429
EM + +L+G LL E +Q+ G+ P +LA + + D I++N+
Sbjct: 35 EMTVDQAVLRGNRER--LLAFRPEEHPIALQLAGSDPKSLAEAARIG-EAFGYDEINLNL 91
Query: 430 GCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY--FEGKNRIDSLIA 487
GCP + G G+CLL R++ I++A V P+T+K+R G E + +
Sbjct: 92 GCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVE 151
Query: 488 DIGTWGASAVTVHGR-------TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL 540
+ G VH R T+ R D++++ L + NG I S
Sbjct: 152 AMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFP-QLTFVTNGGIRSLE 210
Query: 541 DWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWG 600
+ H M+ R P++ E + RL + + + E
Sbjct: 211 EALFHLKRV---DGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVL 267
Query: 601 SDKKGVETTRHFL 613
RH L
Sbjct: 268 KGTPPWAVLRHML 280
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 1e-10
Identities = 89/611 (14%), Positives = 170/611 (27%), Gaps = 197/611 (32%)
Query: 154 YG-LACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLG 212
Y L R S T + + L D Q K + L
Sbjct: 91 YKFLMSPIKTEQRQ-----PSMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQ-PYLKL- 140
Query: 213 LLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVND 272
+ ++E + + V+ +G + G+G + + +
Sbjct: 141 -------RQALLELRPAKNVL-------IDG---VLGSGKTWVALD----------VCLS 173
Query: 273 RPLKKAKSENV-----ENCCSVEGDNGVSVLEE-DTRNNTADTQPAAKIDDILPETDGSL 326
++ + +NC S E +VLE D ++ D ++ L
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPE-----TVLEMLQKLLYQIDPNWTSRSD---HSSNIKL 225
Query: 327 KTHSREKKLID-FREKLY---LAPLTTVGNL----PFRRVCKVLGADVTCGEMAMCTNLL 378
+ HS + +L + K Y L L V N F CK+L +T + L
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLS 282
Query: 379 QGQASEWAL------LRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCP 432
+ +L L + L + P L R + T +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPR------EVLTTN--------- 326
Query: 433 IDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE--GKNRIDSLIADIG 490
P R+ I E+ D T ++ +++ ++I
Sbjct: 327 ----------------PRRLSIIAESIR---DGLATWD----NWKHVNCDKLTTIIE--- 360
Query: 491 TWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDD----LQVLGNGDIYSYLDWNKHK 546
+S + ++ + +L+ ++ +L + W
Sbjct: 361 ---SSLNVLEPAEYRKMFDRLS----VFP------PSAHIPTILLS---LI----WFDVI 400
Query: 547 SDCPELASCMIARGALIKPW----------IFTEIKEQR------HWDITSGERLNIMKD 590
+ + + +L++ I+ E+K + H I + NI K
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--DHYNIPKT 458
Query: 591 FARFGL----------EHWG-------SDKKGVETTRHFL-LEWLSYTCRY------IPV 626
F L H G ++ FL +L R+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 627 GLLDVIPQRLNWRP------PAYSGR-DDL-------ETLMASDSAADWIRISEMLLGKV 672
+L+ + Q ++P P Y + + E + D +RI+ M
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM----A 574
Query: 673 PDGFTFAPKHK 683
D F HK
Sbjct: 575 EDEAIFEEAHK 585
|
| >1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-09
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 103 LCPEVAKSGDVSSCPYKDKCRFSHDLDG--FKAQKPDDLEGECPFLSSEGPCPYGLACRF 160
LC ++SG C Y KC+F+H L + P C +G CPYG C F
Sbjct: 14 LCRTYSESG---RCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHF 70
Query: 161 S 161
Sbjct: 71 I 71
|
| >2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 4e-04
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 12/47 (25%)
Query: 115 SCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFS 161
C + C + H C + G C G C FS
Sbjct: 23 FCARAENCPYMHGDF------------PCKLYHTTGNCINGDDCMFS 57
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 693 | ||||
| d1vhna_ | 305 | c.1.4.1 (A:) Putative flavin oxidoreducatase TM009 | 7e-31 | |
| d1ep3a_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 7e-07 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Score = 120 bits (302), Expect = 7e-31
Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 14/277 (5%)
Query: 341 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQ 400
K+ LAP+ + FR + GAD EM L LL E VQ
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQ 60
Query: 401 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS 460
I G+ P+ L+ ++ +ID+N GCP+ VV +GAG LL + I+
Sbjct: 61 IFGSEPNELSEAARIL--SEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELR 118
Query: 461 GTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 520
+V ++K R G+ + + + G V +H RT Q ++ A+W +
Sbjct: 119 KSVSGKFSVKTRLGWEKNEVEEI--YRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVL 176
Query: 521 ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF----TEIKEQRH 576
+ +GDI++ D + + ++ARGA+ +PWIF ++ ++
Sbjct: 177 ----EKRIPTFVSGDIFTPEDAKRAL-EESGCDGLLVARGAIGRPWIFKQIKDFLRSGKY 231
Query: 577 WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFL 613
+ + E L + ++ G K VE +
Sbjct: 232 SEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLA 268
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 49.2 bits (116), Expect = 7e-07
Identities = 30/208 (14%), Positives = 61/208 (29%), Gaps = 28/208 (13%)
Query: 385 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSC 444
L + E + G+ I V I++N+ CP G
Sbjct: 89 LPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK----HGGQA 144
Query: 445 LLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG--------KNRIDSLIADIGTWGASA 496
T P +++A P+ +K+ + D L I T
Sbjct: 145 FGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTM-INTLMGVR 203
Query: 497 VTVHGR---------TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD-WNKHK 546
+ R K I+Q A+ D+ ++G G + + D +
Sbjct: 204 FDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQD--VDIPIIGMGGVANAQDVLEMYM 261
Query: 547 SDCPELASCMIARGALIKPWIFTEIKEQ 574
+ ++ + P++ +I ++
Sbjct: 262 AGA---SAVAVGTANFADPFVCPKIIDK 286
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 693 | |||
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 100.0 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 100.0 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 100.0 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 100.0 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.97 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 99.97 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 99.97 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.97 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 99.96 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.95 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.95 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.86 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.81 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.81 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.8 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.78 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.5 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 99.35 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 99.3 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.26 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 99.08 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 99.07 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.03 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.01 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.99 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 98.86 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 98.84 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 98.84 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.83 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.81 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 98.8 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 98.77 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.77 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.66 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 98.48 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.45 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 98.2 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.17 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.12 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 97.99 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 97.99 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 97.92 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 97.87 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 97.81 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 97.74 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.62 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.6 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 97.58 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.49 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 97.46 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.45 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.43 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 97.39 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 97.39 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.29 | |
| d1m9oa_ | 40 | Tristetraproline (ttp, tis11, nup475) {Mouse (Mus | 97.26 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 97.21 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 97.17 | |
| d1rgoa2 | 34 | Butyrate response factor 2 (Tis11D) {Human (Homo s | 97.15 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 97.06 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.06 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 97.05 | |
| d1rgoa1 | 36 | Butyrate response factor 2 (Tis11D) {Human (Homo s | 97.03 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.03 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 96.99 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 96.88 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 96.79 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 96.79 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 96.71 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 96.64 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 96.37 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.35 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 96.29 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 96.22 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 95.81 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 95.73 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 95.68 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 95.68 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 95.67 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 95.58 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 95.56 | |
| d1m9oa_ | 40 | Tristetraproline (ttp, tis11, nup475) {Mouse (Mus | 95.43 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 95.26 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 95.21 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 95.17 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 95.09 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 95.02 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 94.99 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 94.95 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 94.88 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 94.85 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 94.81 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 94.8 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 94.78 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 94.66 | |
| d1rgoa2 | 34 | Butyrate response factor 2 (Tis11D) {Human (Homo s | 94.63 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 94.63 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 94.19 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 94.14 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 94.05 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 93.99 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 93.88 | |
| d1rgoa1 | 36 | Butyrate response factor 2 (Tis11D) {Human (Homo s | 93.87 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 93.82 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 93.65 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 93.61 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 93.47 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 93.33 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 93.18 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 93.13 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 93.09 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 92.79 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 92.6 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 92.57 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 92.52 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 92.24 | |
| d1n55a_ | 249 | Triosephosphate isomerase {Leishmania mexicana [Ta | 92.19 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 92.12 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 92.01 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 91.88 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 91.83 | |
| d1mo0a_ | 257 | Triosephosphate isomerase {Nematode (Caenorhabditi | 91.79 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 91.71 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 91.56 | |
| d2cqea1 | 56 | Zinc finger CCCH domain-containing protein C19orf7 | 91.44 | |
| d1r2ra_ | 246 | Triosephosphate isomerase {Rabbit (Oryctolagus cun | 91.34 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 91.16 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 90.9 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 90.47 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 89.99 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 89.77 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 89.74 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 89.57 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 89.52 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 88.99 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 88.8 | |
| d1neya_ | 247 | Triosephosphate isomerase {Baker's yeast (Saccharo | 88.59 | |
| d2cqea2 | 29 | Zinc finger CCCH domain-containing protein C19orf7 | 88.05 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 87.4 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 85.12 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 85.05 | |
| d1kv5a_ | 249 | Triosephosphate isomerase {Trypanosoma brucei [Tax | 84.29 | |
| d1b9ba_ | 252 | Triosephosphate isomerase {Thermotoga maritima [Ta | 84.17 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 84.12 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 84.03 | |
| d1o5xa_ | 246 | Triosephosphate isomerase {Plasmodium falciparum [ | 83.32 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 83.17 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 82.62 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 82.28 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 80.28 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=505.88 Aligned_cols=297 Identities=24% Similarity=0.394 Sum_probs=269.5
Q ss_pred CEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf 38875698979399999999909998991651000000288234453302679991999905888999999999976518
Q 005508 341 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQC 420 (693)
Q Consensus 341 rl~LAPMt~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~a 420 (693)
|++||||+++||+|||++|+.+|+|++||||+++..++++....+.++ .++.|.|+++||+|++|+.|++||+++. .
T Consensus 2 ki~LAPM~g~td~~fR~l~~~~g~~~~~Temi~~~~~~~~~~~~~~~~-~~~~e~p~~~Ql~g~~p~~~~~aa~~~~-~- 78 (305)
T d1vhna_ 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIFGSEPNELSEAARILS-E- 78 (305)
T ss_dssp EEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEECSCHHHHHHHHHHHT-T-
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCEEEECCEEECHHHHCCHHHHHHC-CCCCCCCEEEEEECCCHHHHHHHHHHHH-H-
T ss_conf 299977689806999999999790999989999514662986568641-4877787489995262666541111002-1-
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98699983889974311277430013793899999998406544577998458998994689999999997598789996
Q 005508 421 TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 500 (693)
Q Consensus 421 G~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIH 500 (693)
|+|+||||||||+++|.++|+||+||++|+++.+||+++++++++|||||+|+||++. ...++++.++++|+++||||
T Consensus 79 ~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~--~~~~~~~~l~~~G~~~itvH 156 (305)
T d1vhna_ 79 KYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKN--EVEEIYRILVEEGVDEVFIH 156 (305)
T ss_dssp TCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSC--CHHHHHHHHHHTTCCEEEEE
T ss_pred HEEEEEEEEEECCHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--HHHHHHHHHHHHCCCEEEEC
T ss_conf 1036668987442022144533121258899998866666411333334544476531--12478899998297278730
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHC----CC
Q ss_conf 34456866787649999999998299944999298789887999871399967897717876289703678740----68
Q 005508 501 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ----RH 576 (693)
Q Consensus 501 gRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~----~~ 576 (693)
|||+.|+|++++||++|.++++ ++|||+||||.|++|+.++++. +||||||||||+|.|||||.+|++. ..
T Consensus 157 ~Rt~~q~~~~~a~~~~i~~~~~----~ipvi~NGdI~s~~d~~~~l~~-tg~dgVMiGRgal~nP~if~~i~~~l~~~~~ 231 (305)
T d1vhna_ 157 TRTVVQSFTGRAEWKALSVLEK----RIPTFVSGDIFTPEDAKRALEE-SGCDGLLVARGAIGRPWIFKQIKDFLRSGKY 231 (305)
T ss_dssp SSCTTTTTSSCCCGGGGGGSCC----SSCEEEESSCCSHHHHHHHHHH-HCCSEEEESGGGTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHH----HHHHHCCCCCCCHHHHHHHHHH-CCCCEEEHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1245421332003467776633----3321035543658789999984-0999671367998755676664665337984
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 99997899999999999999861597213799999999999976500788643446543479999999985576874279
Q 005508 577 WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASD 656 (693)
Q Consensus 577 ~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~ewls~~~ryiP~glle~~p~~~n~rpp~~~~R~~letL~~s~ 656 (693)
.+++..|+++++.+|+++..++||. ..++..+|+|+. +|.+++|.+ ...| ..|+.+.
T Consensus 232 ~~~~~~e~~~~~~~~~~~~~~~~g~-~~~l~~~rkhl~----~~~kg~p~a---------------k~~R---~~l~~~~ 288 (305)
T d1vhna_ 232 SEPSREEILRTFERHLELLIKTKGE-RKAVVEMRKFLA----GYTKDLKGA---------------RRFR---EKVMKIE 288 (305)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHH----HHTTTCTTH---------------HHHH---HHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH----HHHCCCCCH---------------HHHH---HHHHHCC
T ss_conf 4212588987699999999985595-159999999999----997279868---------------9999---9998489
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 98999999998629
Q 005508 657 SAADWIRISEMLLG 670 (693)
Q Consensus 657 ~~~dw~ki~e~~lg 670 (693)
+..+...+.+.|+.
T Consensus 289 ~~~el~~~l~~~~~ 302 (305)
T d1vhna_ 289 EVQILKEMFYNFIK 302 (305)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999999
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.1e-33 Score=236.96 Aligned_cols=249 Identities=12% Similarity=0.088 Sum_probs=205.4
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCC---------CCHHHHHHHHH--CCCCEEEECCCCCCHHCCCCHH-----------H
Q ss_conf 767644478211693887569897---------93999999999--0999899165100000028823-----------4
Q 005508 327 KTHSREKKLIDFREKLYLAPLTTV---------GNLPFRRVCKV--LGADVTCGEMAMCTNLLQGQAS-----------E 384 (693)
Q Consensus 327 ~~~p~ekk~l~l~nrl~LAPMt~v---------tdlpFRrl~~~--~Gadl~~TEMv~a~~L~~g~~~-----------e 384 (693)
-|.|.+++++.|+||+++|||++. ++..++++..+ .|+++++||.+.+.+-..+... .
T Consensus 4 LF~P~~ig~~~lkNRiv~aPm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~~~~~~~~d~~i~~ 83 (337)
T d1z41a1 4 LFTPITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEG 83 (337)
T ss_dssp GGSCEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHH
T ss_pred CCCCCEECCEEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 99981489988888878673579756789999999999999998768960999785887423156668653263787778
Q ss_pred HHHH--HCCCCCCEEEEEECCCC-----------------------------------HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 4533--02679991999905888-----------------------------------9999999999765189869998
Q 005508 385 WALL--RRHSSEDLFGVQICGAY-----------------------------------PDTLARTVELIDQQCTVDFIDI 427 (693)
Q Consensus 385 ~~ll--~~h~~e~pigvQL~G~~-----------------------------------pe~~a~AAe~l~~~aG~D~IDL 427 (693)
|+.+ ..|..+.++++||++.. .+.|+.||+++. ++|||+|+|
T Consensus 84 ~k~l~~avh~~G~~i~~QL~h~Gr~~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~-~AGfDGVEi 162 (337)
T d1z41a1 84 FAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAK-EAGFDVIEI 162 (337)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHH-HTTCSEEEE
T ss_pred HHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEE
T ss_conf 8999998631343200233208875445688789865556558998700699999999999999999999-839985886
Q ss_pred CCC---------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCC----CCHHHHHHHHHHHHHCCC
Q ss_conf 388---------9974311277430013793899999998406544577998458998----994689999999997598
Q 005508 428 NMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF----EGKNRIDSLIADIGTWGA 494 (693)
Q Consensus 428 N~G---------CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~----e~~~~a~~la~~L~e~Gv 494 (693)
|++ +|..+.+++.||++|.+|.+++.+||++|+++++.|+.|+++.... .+.++...+++.|+++|+
T Consensus 163 H~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~ 242 (337)
T d1z41a1 163 HAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGV 242 (337)
T ss_dssp EECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTC
T ss_pred ECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 43675221032277433445444515653026899999877665035634885342234676410446899999998498
Q ss_pred CEEEEECCCCCC--C-CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHH
Q ss_conf 789996344568--6-6787649999999998299944999298789887999871399967897717876289703678
Q 005508 495 SAVTVHGRTRQQ--R-YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 571 (693)
Q Consensus 495 daItIHgRtr~q--r-yt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eI 571 (693)
+++.++...... . ......+.+...+++.+ ++|||++|+|.++++++++++. ..+|.|++||++|.||+|+.++
T Consensus 243 d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~-g~~D~V~~gR~~iadPd~~~k~ 319 (337)
T d1z41a1 243 DLIDCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAVGMITDGSMAEEILQN-GRADLIFIGRELLRDPFFARTA 319 (337)
T ss_dssp CEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEECSSCCSHHHHHHHHHT-TSCSEEEECHHHHHCTTHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHC-CCCCEEHHHHHHHHCCHHHHHH
T ss_conf 620122123445554568740078999999866--9308996891999999999987-9956506659988693699999
Q ss_pred HHCCCCCC
Q ss_conf 74068999
Q 005508 572 KEQRHWDI 579 (693)
Q Consensus 572 k~~~~~d~ 579 (693)
++++..++
T Consensus 320 ~~~~~~~i 327 (337)
T d1z41a1 320 AKQLNTEI 327 (337)
T ss_dssp HHHTTCCC
T ss_pred HHHCCCCC
T ss_conf 72188999
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-33 Score=234.53 Aligned_cols=247 Identities=12% Similarity=0.015 Sum_probs=195.9
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCC-------CHHHHHHHH--HCCCCEEEECCCCCCHHCCCCH-----------HHH
Q ss_conf 77676444782116938875698979-------399999999--9099989916510000002882-----------344
Q 005508 326 LKTHSREKKLIDFREKLYLAPLTTVG-------NLPFRRVCK--VLGADVTCGEMAMCTNLLQGQA-----------SEW 385 (693)
Q Consensus 326 ~~~~p~ekk~l~l~nrl~LAPMt~vt-------dlpFRrl~~--~~Gadl~~TEMv~a~~L~~g~~-----------~e~ 385 (693)
.-|.|.+++++.|+||+++|||++.. +....++.. +.|+++++||++.+.+...+.. ..|
T Consensus 4 ~LF~P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~ 83 (330)
T d1ps9a1 4 SLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHH 83 (330)
T ss_dssp TTTCCEECSSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHH
T ss_pred HHCCCCCCCCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 22998128999858983838878875789998699999999997078378998205886776666788666773324321
Q ss_pred HHH--HCCCCCCEEEEEECCCC----------------------------------HHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 533--02679991999905888----------------------------------999999999976518986999838
Q 005508 386 ALL--RRHSSEDLFGVQICGAY----------------------------------PDTLARTVELIDQQCTVDFIDINM 429 (693)
Q Consensus 386 ~ll--~~h~~e~pigvQL~G~~----------------------------------pe~~a~AAe~l~~~aG~D~IDLN~ 429 (693)
+.+ ..|..+..+++||++.. .++|+.||+++. ++|||+||||+
T Consensus 84 k~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~aA~ra~-~AGfDgVEIh~ 162 (330)
T d1ps9a1 84 RTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAR-EAGYDGVEVMG 162 (330)
T ss_dssp HHHHHHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHH-HTTCSEEEEEE
T ss_pred CCCEEEEECCCCEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHH-HHCCCEEEECC
T ss_conf 01123542389851045665288534576668855556556888710373577789999999999999-84967564100
Q ss_pred C---------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCC------CHHHHHHHHHHHHHCCC
Q ss_conf 8---------99743112774300137938999999984065445779984589989------94689999999997598
Q 005508 430 G---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE------GKNRIDSLIADIGTWGA 494 (693)
Q Consensus 430 G---------CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e------~~~~a~~la~~L~e~Gv 494 (693)
+ +|..+.+++.||+++.+|.+++.+||++|+++++.++.|.+|+++.+ +.+++.++++.|+++|+
T Consensus 163 ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~ 242 (330)
T d1ps9a1 163 SEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGA 242 (330)
T ss_dssp CBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 36777788887524544566772476644779999999999738876057515610014688888999999999998500
Q ss_pred CEEEEECCCCCCC---CCC----CCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCC
Q ss_conf 7899963445686---678----764999999999829994499929878988799987139996789771787628970
Q 005508 495 SAVTVHGRTRQQR---YSK----LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 567 (693)
Q Consensus 495 daItIHgRtr~qr---yt~----~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwi 567 (693)
+++.+........ +.. .....+..++++.+ ++|||++|+|++++++++++++ ..+|.|++||++|.||+|
T Consensus 243 d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~-g~~D~V~~gR~~iadP~~ 319 (330)
T d1ps9a1 243 TIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV--SLPLVTTNRINDPQVADDILSR-GDADMVSMARPFLADAEL 319 (330)
T ss_dssp SEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC--SSCEEECSSCCSHHHHHHHHHT-TSCSEEEESTHHHHCTTH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHC-CCCCHHHHHHHHHHCHHH
T ss_conf 0221124654443233477776206799999998647--9619996998989999999987-996615762999869129
Q ss_pred HHHHHHCCC
Q ss_conf 367874068
Q 005508 568 FTEIKEQRH 576 (693)
Q Consensus 568 F~eIk~~~~ 576 (693)
+.++++++.
T Consensus 320 ~~k~~~G~~ 328 (330)
T d1ps9a1 320 LSKAQSGRA 328 (330)
T ss_dssp HHHHHTTCG
T ss_pred HHHHHCCCC
T ss_conf 999875686
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=100.00 E-value=2e-32 Score=228.68 Aligned_cols=248 Identities=11% Similarity=0.047 Sum_probs=191.4
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCC--C-----HHHHHHHHHCCCCEEEECCCCCCHHCCCC------------HHHH
Q ss_conf 877676444782116938875698979--3-----99999999909998991651000000288------------2344
Q 005508 325 SLKTHSREKKLIDFREKLYLAPLTTVG--N-----LPFRRVCKVLGADVTCGEMAMCTNLLQGQ------------ASEW 385 (693)
Q Consensus 325 ~~~~~p~ekk~l~l~nrl~LAPMt~vt--d-----lpFRrl~~~~Gadl~~TEMv~a~~L~~g~------------~~e~ 385 (693)
..-|+|.+++++.|+||+++|||+... + ..++....+.|+++++||++.+.+...+. ...|
T Consensus 7 ~~LF~P~~ig~~~l~NRiv~apm~~~~~~~~~~~~~~~~~~rA~gG~gliite~~~v~~~~~~~~~~~~~~~~d~~i~~~ 86 (340)
T d1djqa1 7 DILFEPIQIGPKTLRNRFYQVPHAIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNL 86 (340)
T ss_dssp GGGGSCEEETTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHH
T ss_pred HHCCCCCEECCEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEECCHH
T ss_conf 22399742998888887573889887789997799999999963690799997778544324677777341410001012
Q ss_pred HHH--HCCCCCCEEEEEECCCC---------------------------------------HHHHHHHHHHHHHHCCCCE
Q ss_conf 533--02679991999905888---------------------------------------9999999999765189869
Q 005508 386 ALL--RRHSSEDLFGVQICGAY---------------------------------------PDTLARTVELIDQQCTVDF 424 (693)
Q Consensus 386 ~ll--~~h~~e~pigvQL~G~~---------------------------------------pe~~a~AAe~l~~~aG~D~ 424 (693)
+.+ ..|..+..+++||++.. .+.|+.||+++. ++|||+
T Consensus 87 ~~l~~~vh~~g~~i~~Ql~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA~~a~-~aGfDg 165 (340)
T d1djqa1 87 KAMTDEVHKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSR-DAGFDI 165 (340)
T ss_dssp HHHHHHHHHTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHH-HHTCSE
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHCCCE
T ss_conf 2367876415560667653044310102567764433454544467788866999999999999888899998-705240
Q ss_pred EEECCC---------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEECCCCC-----CCHHHHHHHHHH
Q ss_conf 998388---------997431127743001379389999999840654--4577998458998-----994689999999
Q 005508 425 IDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYF-----EGKNRIDSLIAD 488 (693)
Q Consensus 425 IDLN~G---------CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR~G~~-----e~~~~a~~la~~ 488 (693)
||||++ +|..+.+++.||++|.+|.+++.+|+++|++++ ++||.+|+..... ...+.....+..
T Consensus 166 VEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~ 245 (340)
T d1djqa1 166 VYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVE 245 (340)
T ss_dssp EEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 00003564011001320155345334546776357899999988888755300115345000355777734466899988
Q ss_pred HHHCCCCEEEEECCCCC---------CCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECH
Q ss_conf 99759878999634456---------866787649999999998299944999298789887999871399967897717
Q 005508 489 IGTWGASAVTVHGRTRQ---------QRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 489 L~e~GvdaItIHgRtr~---------qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGR 559 (693)
+.+.|++++.|+...-. ..+.....+.++..+++.+ ++|||++|+|++++++.+++++ ..+|+|++||
T Consensus 246 l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~G~i~~~~~a~~~l~~-G~aDlV~~gR 322 (340)
T d1djqa1 246 MADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS--KKPVLGVGRYTDPEKMIEIVTK-GYADIIGCAR 322 (340)
T ss_dssp HHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC--SSCEEECSCCCCHHHHHHHHHT-TSCSBEEESH
T ss_pred HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHC-CCCCCHHHHH
T ss_conf 776314644233144012345555555578654578999999875--9809998998999999999987-9941114589
Q ss_pred HHHHCCCCHHHHHHCCC
Q ss_conf 87628970367874068
Q 005508 560 GALIKPWIFTEIKEQRH 576 (693)
Q Consensus 560 GaL~nPwiF~eIk~~~~ 576 (693)
++|.||+|+.++++++.
T Consensus 323 ~~iadPdl~~k~~~Gr~ 339 (340)
T d1djqa1 323 PSIADPFLPQKVEQGRY 339 (340)
T ss_dssp HHHHCTTHHHHHHTTCG
T ss_pred HHHHCCCHHHHHHCCCC
T ss_conf 99979019999980699
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.97 E-value=3.1e-31 Score=220.88 Aligned_cols=233 Identities=14% Similarity=0.159 Sum_probs=182.6
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHH---------------------CCCCHHHH--
Q ss_conf 7644478211693887569897939999999990999899165100000---------------------02882344--
Q 005508 329 HSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNL---------------------LQGQASEW-- 385 (693)
Q Consensus 329 ~p~ekk~l~l~nrl~LAPMt~vtdlpFRrl~~~~Gadl~~TEMv~a~~L---------------------~~g~~~e~-- 385 (693)
...+..+++|+||+++|-....++..+..++...|++.+++..+...+- .......|
T Consensus 7 L~~~~~Gl~l~nPi~~aAG~~~~~~~~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~~~~g~~~~~~ 86 (311)
T d1ep3a_ 7 LSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMT 86 (311)
T ss_dssp TCEEETTEEESSSEEECTTSSTTSTTGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHHHH
T ss_pred CEEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 10788998849976788788787899998556648227997047524667899971764025653333445233787754
Q ss_pred ---HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf ---53302679991999905888999999999976518986999838899743112774300137938999999984065
Q 005508 386 ---ALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGT 462 (693)
Q Consensus 386 ---~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~ 462 (693)
..++.+..+.|+++||+++.++.+.++++.+.+.+|+|+||||+|||... +.+..+..++.++.+++.+++.+
T Consensus 87 ~~~~~~~~~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~----~~~~~~~~~~~~~~~~~~~v~~~ 162 (311)
T d1ep3a_ 87 EKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK----HGGQAFGTDPEVAAALVKACKAV 162 (311)
T ss_dssp THHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGG----GTTEEGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 34433311367886321100000247999987775235644011366798500----14433346989999999999851
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC----------------CCC----CCCHHHHHHHHH
Q ss_conf 445779984589989946899999999975987899963445686----------------678----764999999999
Q 005508 463 VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR----------------YSK----LADWDYIYQCAR 522 (693)
Q Consensus 463 v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qr----------------yt~----~Adw~~I~~i~~ 522 (693)
+++|+++|++.++.+ ...+++.+.+.|+++++++.++.... +++ +..|++++++++
T Consensus 163 ~~~p~~vkl~~~~~~----~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~ 238 (311)
T d1ep3a_ 163 SKVPLYVKLSPNVTD----IVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQ 238 (311)
T ss_dssp CSSCEEEEECSCSSC----SHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCC----HHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 278734420221020----5889999998652036888521433101025664325667787887564025789999864
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 829994499929878988799987139996789771787628970367874
Q 005508 523 KASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 523 ~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
.+ ++||||||||.|++|+.+++. .|||+||||||++.+||+|.+|.+
T Consensus 239 ~~--~ipIig~GGI~s~~Da~~~i~--~GAd~V~ig~~~~~~P~i~~~I~~ 285 (311)
T d1ep3a_ 239 DV--DIPIIGMGGVANAQDVLEMYM--AGASAVAVGTANFADPFVCPKIID 285 (311)
T ss_dssp TC--SSCEEECSSCCSHHHHHHHHH--HTCSEEEECTHHHHCTTHHHHHHH
T ss_pred HC--CEEEEEECCCCCHHHHHHHHH--CCCCEEEECHHHHCCCHHHHHHHH
T ss_conf 14--644897089699999999998--099999963887739829999999
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=99.97 E-value=1.3e-28 Score=203.61 Aligned_cols=247 Identities=13% Similarity=0.168 Sum_probs=191.7
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCC---------CCHHHHHHHHHCCCCEEEECCCCCCHHCCCCHH-----------HH
Q ss_conf 7767644478211693887569897---------939999999990999899165100000028823-----------44
Q 005508 326 LKTHSREKKLIDFREKLYLAPLTTV---------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS-----------EW 385 (693)
Q Consensus 326 ~~~~p~ekk~l~l~nrl~LAPMt~v---------tdlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~-----------e~ 385 (693)
--|.|.+++++.++||+++|||++. ++....++..+.|+|+++||.+.+.+-.++... .|
T Consensus 3 ~LF~P~~ig~~~lkNRiv~apm~~~~a~~~g~~~~~~~~~yy~~ra~~Glii~e~~~V~~~~~~~~~~~~l~~d~~i~~~ 82 (363)
T d1vyra_ 3 KLFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAW 82 (363)
T ss_dssp STTSCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHH
T ss_pred CCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHCCCC
T ss_conf 04798368998978873876346876779899898999999999708697998126888533579998743773550320
Q ss_pred HHH--HCCCCCCEEEEEECCCC------------------------------------------------------HHHH
Q ss_conf 533--02679991999905888------------------------------------------------------9999
Q 005508 386 ALL--RRHSSEDLFGVQICGAY------------------------------------------------------PDTL 409 (693)
Q Consensus 386 ~ll--~~h~~e~pigvQL~G~~------------------------------------------------------pe~~ 409 (693)
+.+ ..|..+.++++||++.. .+.|
T Consensus 83 k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f 162 (363)
T d1vyra_ 83 KKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDF 162 (363)
T ss_dssp HHHHHHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 03344565269704664412676545443678763010122355555534476666455787776456677799999999
Q ss_pred HHHHHHHHHHCCCCEEEECCC---------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCC-CCC-
Q ss_conf 999999765189869998388---------997431127743001379389999999840654-45779984589-989-
Q 005508 410 ARTVELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTG-YFE- 477 (693)
Q Consensus 410 a~AAe~l~~~aG~D~IDLN~G---------CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G-~~e- 477 (693)
+.||+++. ++|||+|+||++ .|..|.++|.||++|.+|.+++.+||++|++++ .-+|.+++... ..+
T Consensus 163 ~~AA~rA~-~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~ 241 (363)
T d1vyra_ 163 RQAVANAR-EAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQN 241 (363)
T ss_dssp HHHHHHHH-HTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTT
T ss_pred HHHHHHHH-HHCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCC
T ss_conf 99999999-75134034514671031114467665666544640334447678887655530478874123113233111
Q ss_pred ------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf ------94689999999997598789996344568667876499999999982999449992987898879998713999
Q 005508 478 ------GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 551 (693)
Q Consensus 478 ------~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~g 551 (693)
...++..+++.|.+.|+++|.+....-. ...+....+...+++.+ ++||+++| ++|++.+++++++ ..
T Consensus 242 ~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~--~~~~~~~~~~~~~~~~~--~~~vi~~G-~~t~~~ae~~l~~-G~ 315 (363)
T d1vyra_ 242 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLA--GGKPYSEAFRQKVRERF--HGVIIGAG-AYTAEKAEDLIGK-GL 315 (363)
T ss_dssp BCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTT--BCCCCCHHHHHHHHHHC--CSEEEEES-SCCHHHHHHHHHT-TS
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCC--CCCCCCHHHHHHHHHHC--CCEEEECC-CCCHHHHHHHHHC-CC
T ss_conf 0001330688999999877429806620347766--78653288899989865--85399668-9999999999987-99
Q ss_pred CCEEEECHHHHHCCCCHHHHHHCCCCCC
Q ss_conf 6789771787628970367874068999
Q 005508 552 LASCMIARGALIKPWIFTEIKEQRHWDI 579 (693)
Q Consensus 552 aDgVMIGRGaL~nPwiF~eIk~~~~~d~ 579 (693)
+|.|.+||++|.+|.|+.++++++...+
T Consensus 316 ~DlV~~gR~liadP~~~~K~~~g~~~~~ 343 (363)
T d1vyra_ 316 IDAVAFGRDYIANPDLVARLQKKAELNP 343 (363)
T ss_dssp CSEEEESHHHHHCTTHHHHHHHTCCCCC
T ss_pred CCEEHHHHHHHHCCCHHHHHHHCCCCCC
T ss_conf 6511554999879219999983899999
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.97 E-value=1.1e-28 Score=204.00 Aligned_cols=246 Identities=10% Similarity=0.078 Sum_probs=188.9
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCC-------CCHHHHHHHHHCCCCEEEECCCCCCHHCCCCHH-----------HHHH
Q ss_conf 7767644478211693887569897-------939999999990999899165100000028823-----------4453
Q 005508 326 LKTHSREKKLIDFREKLYLAPLTTV-------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS-----------EWAL 387 (693)
Q Consensus 326 ~~~~p~ekk~l~l~nrl~LAPMt~v-------tdlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~-----------e~~l 387 (693)
.-|+|.+++++.|+||+++|||++. ++....++..+.+.|++++|.+.+.+..++... .|+.
T Consensus 7 ~LF~Pl~Ig~~~lkNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~gGlii~e~~~V~~~~~~~~~~~~i~~d~~i~~~k~ 86 (374)
T d1gwja_ 7 GLFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKG 86 (374)
T ss_dssp CTTSCEEETTEEESCSEEECCCCCCCCSSSCCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCBTTCCBCSSHHHHHHHHH
T ss_pred CCCCCEEECCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99998418998978875874458988999998799999999984878799974798886578889873555554156666
Q ss_pred H--HCCCCCCEEEEEECCCC-------------------------------------------------------HHHHH
Q ss_conf 3--02679991999905888-------------------------------------------------------99999
Q 005508 388 L--RRHSSEDLFGVQICGAY-------------------------------------------------------PDTLA 410 (693)
Q Consensus 388 l--~~h~~e~pigvQL~G~~-------------------------------------------------------pe~~a 410 (693)
+ ..|..+.++++||++.. .+.|+
T Consensus 87 l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 166 (374)
T d1gwja_ 87 VVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPGIVEDYR 166 (374)
T ss_dssp HHHHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 89998605862676554168655545588887100035556667655443565544567878860049999999999999
Q ss_pred HHHHHHHHHCCCCEEEECCC---------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECC-----CC
Q ss_conf 99999765189869998388---------997431127743001379389999999840654-4577998458-----99
Q 005508 411 RTVELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRT-----GY 475 (693)
Q Consensus 411 ~AAe~l~~~aG~D~IDLN~G---------CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~-----G~ 475 (693)
.||+++. ++|||+|+||++ .|..|.++|.||++|.+|.+++.+||++|++++ +..|.+++.. |.
T Consensus 167 ~AA~rA~-~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~ 245 (374)
T d1gwja_ 167 QAAQRAK-RAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGL 245 (374)
T ss_dssp HHHHHHH-HTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTC
T ss_pred HHHHHHH-HHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf 9999999-809988873222034677888753576445434312110056788999899883875322555310023687
Q ss_pred CCC--HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 899--468999999999759878999634456866787649999999998299944999298789887999871399967
Q 005508 476 FEG--KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 476 ~e~--~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaD 553 (693)
.+. ...+..++..|...|+++++++........ ......+...+++.+ ++|||++|+| +++.+++++++ ..+|
T Consensus 246 ~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~--~~pvi~~G~i-~~~~ae~~l~~-g~aD 320 (374)
T d1gwja_ 246 TDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD-ITYPEGFREQMRQRF--KGGLIYCGNY-DAGRAQARLDD-NTAD 320 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBC-CCCCTTHHHHHHHHC--CSEEEEESSC-CHHHHHHHHHT-TSCS
T ss_pred CCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHC--CCCEEEECCC-CHHHHHHHHHC-CCCC
T ss_conf 65324788887641311047227775157645788-652499999999873--8878997895-99999999986-9974
Q ss_pred EEEECHHHHHCCCCHHHHHHCCCC
Q ss_conf 897717876289703678740689
Q 005508 554 SCMIARGALIKPWIFTEIKEQRHW 577 (693)
Q Consensus 554 gVMIGRGaL~nPwiF~eIk~~~~~ 577 (693)
.|++||++|.+|.|..++++++.+
T Consensus 321 lV~~gR~~iadPd~~~K~~~G~~l 344 (374)
T d1gwja_ 321 AVAFGRPFIANPDLPERFRLGAAL 344 (374)
T ss_dssp EEEESHHHHHCTTHHHHHHHTCCC
T ss_pred EEHHHHHHHHCCCHHHHHHCCCCC
T ss_conf 844669998792299999759988
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=99.97 E-value=1.4e-28 Score=203.33 Aligned_cols=254 Identities=11% Similarity=0.064 Sum_probs=191.5
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCC-------CCHHHHHHHHHC-CCCEEEECCCCCCHHCCCCHH-----------
Q ss_conf 7887767644478211693887569897-------939999999990-999899165100000028823-----------
Q 005508 323 DGSLKTHSREKKLIDFREKLYLAPLTTV-------GNLPFRRVCKVL-GADVTCGEMAMCTNLLQGQAS----------- 383 (693)
Q Consensus 323 ~~~~~~~p~ekk~l~l~nrl~LAPMt~v-------tdlpFRrl~~~~-Gadl~~TEMv~a~~L~~g~~~----------- 383 (693)
|..+-|.|.+++++.|+||+++|||++. ++..+.++.++. |.++++||.+.+.+...+...
T Consensus 3 ~~~pLFsP~~ig~~~LkNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gGgliite~~~V~~~g~~~~~~~~l~~d~~i~ 82 (364)
T d1icpa_ 3 DKIPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQVE 82 (364)
T ss_dssp CCCGGGSCEEETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHHHH
T ss_pred CCCCCCCCCEECCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCEECHHHHHH
T ss_conf 89889997248999967842752448985899979799999999998396499971078887335799985313434445
Q ss_pred HHHHH--HCCCCCCEEEEEECCCC--------------------------------------------------HHHHHH
Q ss_conf 44533--02679991999905888--------------------------------------------------999999
Q 005508 384 EWALL--RRHSSEDLFGVQICGAY--------------------------------------------------PDTLAR 411 (693)
Q Consensus 384 e~~ll--~~h~~e~pigvQL~G~~--------------------------------------------------pe~~a~ 411 (693)
.|+.+ ..|..+.++++||++.. .+.|+.
T Consensus 83 ~~k~l~~~ih~~g~~~~~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~ 162 (364)
T d1icpa_ 83 AWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRV 162 (364)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 67788888623788257764047755455444578887532345653111234656567888731106679999998899
Q ss_pred HHHHHHHHCCCCEEEECCC---------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCC-----
Q ss_conf 9999765189869998388---------997431127743001379389999999840654-4577998458998-----
Q 005508 412 TVELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYF----- 476 (693)
Q Consensus 412 AAe~l~~~aG~D~IDLN~G---------CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G~~----- 476 (693)
||+++. ++|||+|+||++ .|..+.|+|.||++|.+|.+++.+||++|++++ +.++.+++....+
T Consensus 163 aA~rA~-~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g 241 (364)
T d1icpa_ 163 AARNAI-EAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAG 241 (364)
T ss_dssp HHHHHH-HTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCC
T ss_pred HHHHHH-HHCCCEEEEECCCCCHHHCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
T ss_conf 999999-8399868983057621312001100776754442043201678987654201248864668860432246776
Q ss_pred --CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf --994689999999997598789996344568667876499999999982999449992987898879998713999678
Q 005508 477 --EGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELAS 554 (693)
Q Consensus 477 --e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDg 554 (693)
+.......++..+..++++.+++........+.....+++...+++.+ ++|||++|++ +++++.+.+.+ .++|.
T Consensus 242 ~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~vi~~g~~-~~~~ae~~l~~-g~aD~ 317 (364)
T d1icpa_ 242 DTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAY--KGTFIVAGGY-DREDGNRALIE-DRADL 317 (364)
T ss_dssp CSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHC--CSCEEEESSC-CHHHHHHHHHT-TSCSE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC--CCCEEEECCC-CHHHHHHHHHC-CCCCE
T ss_conf 75167778899877520322456651586554554554478899999864--7878997898-99999999986-99765
Q ss_pred EEECHHHHHCCCCHHHHHHCCCCCCCH
Q ss_conf 977178762897036787406899997
Q 005508 555 CMIARGALIKPWIFTEIKEQRHWDITS 581 (693)
Q Consensus 555 VMIGRGaL~nPwiF~eIk~~~~~d~s~ 581 (693)
|++||++|.||+|..++++++.+.+..
T Consensus 318 V~~gR~~iadPd~~~k~~~g~pi~~~~ 344 (364)
T d1icpa_ 318 VAYGRLFISNPDLPKRFELNAPLNKYN 344 (364)
T ss_dssp EEESHHHHHCTTHHHHHHHTCCCCCCC
T ss_pred EHHHHHHHHCCCHHHHHHCCCCCCCCC
T ss_conf 056799997904999997099989886
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=99.96 E-value=7.3e-28 Score=198.62 Aligned_cols=248 Identities=9% Similarity=0.041 Sum_probs=178.4
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCC----------CHHHHHHHHH--CCCCEEEECCCCCCHHCCCCHH----------
Q ss_conf 77676444782116938875698979----------3999999999--0999899165100000028823----------
Q 005508 326 LKTHSREKKLIDFREKLYLAPLTTVG----------NLPFRRVCKV--LGADVTCGEMAMCTNLLQGQAS---------- 383 (693)
Q Consensus 326 ~~~~p~ekk~l~l~nrl~LAPMt~vt----------dlpFRrl~~~--~Gadl~~TEMv~a~~L~~g~~~---------- 383 (693)
--|.|.+++++.|+||+++|||++.. +...+++..+ .|+++++||.+.+.+...+...
T Consensus 15 ~LFsP~~Ig~~~lkNRiv~apm~~~~a~~~G~~~~~d~~i~yy~~rA~GG~GlIi~e~~~V~~~g~~~~~~~~l~~d~~i 94 (399)
T d1oyaa_ 15 NLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSEEQM 94 (399)
T ss_dssp GGGSCEEETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEEEEEEESSGGGCCCTTSCBSSSHHHH
T ss_pred CCCCCEEECCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEECCCCCCCCCCCCCCCHHHH
T ss_conf 99997328998863766877766775789989798799999999997289079996437777654778998745787998
Q ss_pred -HHHHH--HCCCCCCEEEEEECCCC--------------------------------------------------HHHHH
Q ss_conf -44533--02679991999905888--------------------------------------------------99999
Q 005508 384 -EWALL--RRHSSEDLFGVQICGAY--------------------------------------------------PDTLA 410 (693)
Q Consensus 384 -e~~ll--~~h~~e~pigvQL~G~~--------------------------------------------------pe~~a 410 (693)
.|+.+ ..|..+.++++||++.. .++|+
T Consensus 95 ~~~k~l~~~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 174 (399)
T d1oyaa_ 95 VEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYV 174 (399)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCEEESCSSCCSCHHHHHHHHHTTCCEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 88869999997520122123322023457421133444566754356677777766656788752015677888888999
Q ss_pred HHHHHHHHHCCCCEEEECCC---------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCC-CCCC-
Q ss_conf 99999765189869998388---------997431127743001379389999999840654-45779984589-9899-
Q 005508 411 RTVELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTG-YFEG- 478 (693)
Q Consensus 411 ~AAe~l~~~aG~D~IDLN~G---------CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G-~~e~- 478 (693)
.||+++. ++|||+||||++ .|..|.|+|.||++|.+|.+++.+||++|++++ +.||.|+|... +.++
T Consensus 175 ~AA~rA~-~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~~~~ 253 (399)
T d1oyaa_ 175 QAAKNSI-AAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSM 253 (399)
T ss_dssp HHHHHHH-HTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTC
T ss_pred HHHHHHH-HHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCEEEECHHHCCCCC
T ss_conf 9999999-809756761243777899864130356652247656654577999987543402225744785302202566
Q ss_pred --------HHHHHHHHHHHHHCC-----CCEEEEECCCCCCCC----CCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf --------468999999999759-----878999634456866----787649999999998299944999298789887
Q 005508 479 --------KNRIDSLIADIGTWG-----ASAVTVHGRTRQQRY----SKLADWDYIYQCARKASDDLQVLGNGDIYSYLD 541 (693)
Q Consensus 479 --------~~~a~~la~~L~e~G-----vdaItIHgRtr~qry----t~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eD 541 (693)
......++..+...+ .+.+++....-...+ .+.....+...+++.+ ++|||++|+|.+.++
T Consensus 254 ~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~PVi~~G~i~~~~~ 331 (399)
T d1oyaa_ 254 SGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIW--KGPVIRAGNFALHPE 331 (399)
T ss_dssp CGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHC--CSCEEEESSCTTCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH--CCCEEEECCCCCHHH
T ss_conf 774100057789999988987432454344112214667775545443211126899999982--998899789898699
Q ss_pred HHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHCCCC
Q ss_conf 999871399967897717876289703678740689
Q 005508 542 WNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHW 577 (693)
Q Consensus 542 a~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~~~~ 577 (693)
+.+.+.. .++|.|.+||++|.||.|..++++++.+
T Consensus 332 ~~~~i~~-~~aDlV~~gR~liaDP~l~~K~~~G~~l 366 (399)
T d1oyaa_ 332 VVREEVK-DKRTLIGYGRFFISNPDLVDRLEKGLPL 366 (399)
T ss_dssp HHHHHTT-STTEEEECCHHHHHCTTHHHHHHHTCCC
T ss_pred HHHHHHC-CCCEEHHHHHHHHHCCCHHHHHHCCCCC
T ss_conf 9999975-9981848879999791299999729998
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.95 E-value=1.2e-25 Score=183.96 Aligned_cols=235 Identities=14% Similarity=0.136 Sum_probs=180.0
Q ss_pred CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCCC-----------------------------
Q ss_conf 444782116938875698979399999999909998991651000000288-----------------------------
Q 005508 331 REKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQ----------------------------- 381 (693)
Q Consensus 331 ~ekk~l~l~nrl~LAPMt~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~~g~----------------------------- 381 (693)
.+..++.|+||+++|....-.+....+.+...|++.+++..+...+...++
T Consensus 3 v~~~Gl~l~nPi~~Asg~~~~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~~n~~g~~ 82 (312)
T d1gtea2 3 VEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELIS 82 (312)
T ss_dssp EEETTEEESSSEEECSSGGGSSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCSC
T ss_pred EEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89898871897578876899899999999976995899824058752348998767733677652110112221100002
Q ss_pred ---HHHHH-HH---H-CCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ---23445-33---0-2679991999905888999999999976518986999838899743112774300137938999
Q 005508 382 ---ASEWA-LL---R-RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMK 453 (693)
Q Consensus 382 ---~~e~~-ll---~-~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~ 453 (693)
...|. .+ + ..+...+++..+.+.+++++..+++.+. .+|+|+|+||++||+... ..+.|..+..+++.+.
T Consensus 83 ~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~-~~gad~lelN~scPn~~~-~~~~~~~~~~~~~~~~ 160 (312)
T d1gtea2 83 EKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAE-ASGADALELNLSCPHGMG-ERGMGLACGQDPELVR 160 (312)
T ss_dssp SSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHH-HTTCSEEEEECCCBCCCC------SBGGGCHHHHH
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCCCCC-CCCCCHHHHHHHHHHH
T ss_conf 34215665320020100124654332233321268899988753-577774764168887423-3321013445699999
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC----------------------CCCCCC
Q ss_conf 9999840654457799845899899468999999999759878999634456----------------------866787
Q 005508 454 GIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ----------------------QRYSKL 511 (693)
Q Consensus 454 eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~----------------------qryt~~ 511 (693)
++++++++.+++||+||++..+. +...++..+.+.|+++|+++.+... ..++|+
T Consensus 161 ~i~~~v~~~~~~pv~vKl~~~~~----~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~ 236 (312)
T d1gtea2 161 NICRWVRQAVQIPFFAKLTPNVT----DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGT 236 (312)
T ss_dssp HHHHHHHHHCSSCEEEEECSCSS----CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESG
T ss_pred HHHHHHHHCCCCCEEECCCCCCH----HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99998753358865632464300----48999999987355614999613452110245540244442012245654675
Q ss_pred C----CHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHC-CCCHHHHHHC
Q ss_conf 6----4999999999829994499929878988799987139996789771787628-9703678740
Q 005508 512 A----DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKEQ 574 (693)
Q Consensus 512 A----dw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~n-PwiF~eIk~~ 574 (693)
+ .+++++++++..+ .+||||+|||.|++|+.+++. .|||+|||+++++.+ |.++.+|.++
T Consensus 237 ~i~~~al~~v~~~~~~~~-~ipIi~~GGI~~~~d~~~~l~--aGA~~Vqv~ta~~~~G~~~i~~i~~~ 301 (312)
T d1gtea2 237 AIRPIALRAVTTIARALP-GFPILATGGIDSAESGLQFLH--SGASVLQVCSAVQNQDFTVIQDYCTG 301 (312)
T ss_dssp GGHHHHHHHHHHHHHHST-TCCEEEESSCCSHHHHHHHHH--TTCSEEEESHHHHTSCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHH--CCCCEEEECHHHHCCCHHHHHHHHHH
T ss_conf 750345999999999748-983999868799999999998--39990477786661591999999999
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=99.95 E-value=9.7e-26 Score=184.56 Aligned_cols=248 Identities=10% Similarity=0.001 Sum_probs=177.7
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCC-------CCCHHHHHHHHHC-CCCEEEECCCCCCHHCCCCHH-----------HH
Q ss_conf 8776764447821169388756989-------7939999999990-999899165100000028823-----------44
Q 005508 325 SLKTHSREKKLIDFREKLYLAPLTT-------VGNLPFRRVCKVL-GADVTCGEMAMCTNLLQGQAS-----------EW 385 (693)
Q Consensus 325 ~~~~~p~ekk~l~l~nrl~LAPMt~-------vtdlpFRrl~~~~-Gadl~~TEMv~a~~L~~g~~~-----------e~ 385 (693)
++-|+|.+++++.|+||+++|||++ .++...+++.++. |.++++||.+++.+...+... .|
T Consensus 3 ~~LF~P~~ig~~~lkNRiv~~pm~~~~~~~G~p~~~~~~~y~~rA~Ggglii~~~~~V~~~~~~~~~~~~~~~d~~i~~~ 82 (380)
T d1q45a_ 3 ETLFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGFPHVPGIYSDEQVEAW 82 (380)
T ss_dssp CCTTSCEEETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHTCCTTCEEEEEEEESSTTCCCSTTCCBCSSHHHHHHH
T ss_pred CCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 63589811899985687588443888388997999999999999849779997450887775789998621777998899
Q ss_pred HHH--HCCCCCCEEEEEECCCC-----------------------------------------------------HHHHH
Q ss_conf 533--02679991999905888-----------------------------------------------------99999
Q 005508 386 ALL--RRHSSEDLFGVQICGAY-----------------------------------------------------PDTLA 410 (693)
Q Consensus 386 ~ll--~~h~~e~pigvQL~G~~-----------------------------------------------------pe~~a 410 (693)
+.+ ..|..+.++++||++.. .+.|+
T Consensus 83 k~l~~~vh~~g~~~~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~ 162 (380)
T d1q45a_ 83 KQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDYC 162 (380)
T ss_dssp HHHHHHHHHTTCEEEEEEECCTTSCCGGGSGGGCCCEESSSCCCCTTTCCEECTTSCEECCCCCEECCGGGHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 99999987357625887530786666554556778766655766667722426775556899884378788999999999
Q ss_pred HHHHHHHHHCCCCEEEECCC---------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCC----
Q ss_conf 99999765189869998388---------99743112774300137938999999984065445779984589989----
Q 005508 411 RTVELIDQQCTVDFIDINMG---------CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFE---- 477 (693)
Q Consensus 411 ~AAe~l~~~aG~D~IDLN~G---------CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e---- 477 (693)
.||+++. ++|||+|+||++ .|..|.|+|.||+++.+|.+++.+||++++++++-.+.+-.|....+
T Consensus 163 ~aA~~A~-~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~~ 241 (380)
T d1q45a_ 163 LSALNAI-RAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDA 241 (380)
T ss_dssp HHHHHHH-HHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGC
T ss_pred HHHHHHH-HHCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf 9999999-828653660002113676541653355766557642310366777799888870156722787520223664
Q ss_pred ----CHHHHHHHHH------HHHHCCCCEEEEECCCCC-------CCCCCCCC-HHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf ----9468999999------999759878999634456-------86678764-99999999982999449992987898
Q 005508 478 ----GKNRIDSLIA------DIGTWGASAVTVHGRTRQ-------QRYSKLAD-WDYIYQCARKASDDLQVLGNGDIYSY 539 (693)
Q Consensus 478 ----~~~~a~~la~------~L~e~GvdaItIHgRtr~-------qryt~~Ad-w~~I~~i~~~~~~~IPVIgNGdI~S~ 539 (693)
.......++. .+...+++++.+....-. .+...... ..++..++..+ ++||+++|++ ++
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pv~~~Gg~-~~ 318 (380)
T d1q45a_ 242 TDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAY--NGTFMSSGGF-NK 318 (380)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHS--CSCEEEESSC-CH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEECCCC-CH
T ss_conf 21331233332102566766531356324774167544333345665676256678899886524--8858967998-99
Q ss_pred HHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHCCCC
Q ss_conf 87999871399967897717876289703678740689
Q 005508 540 LDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHW 577 (693)
Q Consensus 540 eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~~~~ 577 (693)
+.+++++++ ..+|.|.+||++|.+|+|..+++.+...
T Consensus 319 ~~ae~~l~~-G~~DlV~~gR~liaDPdlv~K~~~g~~l 355 (380)
T d1q45a_ 319 ELGMQAVQQ-GDADLVSYGRLFIANPDLVSRFKIDGEL 355 (380)
T ss_dssp HHHHHHHHT-TSCSEEEESHHHHHCTTHHHHHHTTCCC
T ss_pred HHHHHHHHC-CCCCCHHHHHHHHHCCCHHHHHHCCCCC
T ss_conf 999999986-9963245529988792499999629998
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.86 E-value=2.2e-19 Score=142.61 Aligned_cols=235 Identities=12% Similarity=0.052 Sum_probs=171.2
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHC---------------C------CCHHHH---
Q ss_conf 6444782116938875698979399999999909998991651000000---------------2------882344---
Q 005508 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL---------------Q------GQASEW--- 385 (693)
Q Consensus 330 p~ekk~l~l~nrl~LAPMt~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~---------------~------g~~~e~--- 385 (693)
..+..+++|+||+++|-.....+...-+.+...|+|.+++..+...+-. + .....|
T Consensus 3 s~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~~~G~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g~~~~~~~ 82 (311)
T d1juba_ 3 NTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDY 82 (311)
T ss_dssp CEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHH
T ss_pred EEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHCCCHHHHHHHH
T ss_conf 59989986489777897888899999999997797489997882044437999869975431010044427206889987
Q ss_pred --HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf --533026799919999058889999999999765189869998388997431127743001379389999999840654
Q 005508 386 --ALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 463 (693)
Q Consensus 386 --~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v 463 (693)
...+....+.|+++.|.+.....+...++.+....+.|+|+||+.||.... +..+..++..+.++++.++..+
T Consensus 83 ~~~~~~~~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~-----~~~~~~~~~~~~~~~~~v~~~~ 157 (311)
T d1juba_ 83 VLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPG-----EPQLAYDFEATEKLLKEVFTFF 157 (311)
T ss_dssp HHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSS-----CCCGGGCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCC-----CCCCCCCHHHHHHHHHHHHCCC
T ss_conf 77764313567870440146554125899988741554554662133556666-----3200023899999998753024
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-------------------CCCCCCC----CHHHHHHH
Q ss_conf 457799845899899468999999999759878999634456-------------------8667876----49999999
Q 005508 464 DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQ-------------------QRYSKLA----DWDYIYQC 520 (693)
Q Consensus 464 ~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~-------------------qryt~~A----dw~~I~~i 520 (693)
++|+.||+...+. ......++..+.+.|+++++....... ..+++.+ ....+.++
T Consensus 158 ~~pv~vKl~p~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i 235 (311)
T d1juba_ 158 TKPLGVKLPPYFD--LVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAF 235 (311)
T ss_dssp CSCEEEEECCCCS--HHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHH
T ss_pred CCCEEECCCCCCH--HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 5642312444302--56788899998751543674134445522322344443345644457765643570679999999
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHC-CCCHHHHHH
Q ss_conf 99829994499929878988799987139996789771787628-970367874
Q 005508 521 ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK-PWIFTEIKE 573 (693)
Q Consensus 521 ~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~n-PwiF~eIk~ 573 (693)
++....++||||+|||.|++|+.+++. .|||.|+|+++++.+ |+++.+|.+
T Consensus 236 ~~~~~~~~~Iig~GGI~s~~Da~~~i~--aGA~~Vql~tal~~~Gp~~i~~i~~ 287 (311)
T d1juba_ 236 YTRLKPEIQIIGTGGIETGQDAFEHLL--CGATMLQIGTALHKEGPAIFDRIIK 287 (311)
T ss_dssp HTTSCTTSEEEEESSCCSHHHHHHHHH--HTCSEEEECHHHHHHCTHHHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHH--CCCCCEEEEHHHHHCCHHHHHHHHH
T ss_conf 974189736885178389999999998--4999036517567409199999999
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=9.9e-18 Score=131.67 Aligned_cols=235 Identities=14% Similarity=0.124 Sum_probs=159.2
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHC-----------------------CCCHH
Q ss_conf 7676444782116938875698979399999999909998991651000000-----------------------28823
Q 005508 327 KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL-----------------------QGQAS 383 (693)
Q Consensus 327 ~~~p~ekk~l~l~nrl~LAPMt~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~-----------------------~g~~~ 383 (693)
+-.+.+..++.|+|++++|.=.+-.....+ .+...|+|.+++.-+...+.. .....
T Consensus 43 ~~L~v~~~Gl~~~NPiglAsG~~~~~e~i~-~~~~~G~G~vv~ktit~~p~~gnp~pr~~~~~~~~~~iN~~gl~n~g~~ 121 (336)
T d1f76a_ 43 PAKPVNCMGLTFKNPLGLAAGLDKDGECID-ALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVD 121 (336)
T ss_dssp CCCCEEETTEEESSSEEECTTSSTTCCCHH-HHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHH
T ss_pred CCCCEEECCEECCCCCEECCCCCCCHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHH
T ss_conf 788867898616997776864677718899-9974243110355223555679987432235543212011367630078
Q ss_pred HHH-HHHCCCCCCEEEEEECCCC-------HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 445-3302679991999905888-------99999999997651898699983889974311277430013793899999
Q 005508 384 EWA-LLRRHSSEDLFGVQICGAY-------PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455 (693)
Q Consensus 384 e~~-ll~~h~~e~pigvQL~G~~-------pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eI 455 (693)
.|. .+.....+.++++.|.++. .+++..+.+.+. .++|+|+||++||... |...+.....+...
T Consensus 122 ~~~~~~~~~~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~--~~ad~iElNiScPN~~------g~~~~~~~~~l~~~ 193 (336)
T d1f76a_ 122 NLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIY--AYAGYIAINISSPNTP------GLRTLQYGEALDDL 193 (336)
T ss_dssp HHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHG--GGCSEEEEECCCSSST------TGGGGGSHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH--CCCCEEEECCCCHHHH------CCCCCCCCHHHCCC
T ss_conf 999974103566158999932677604778999999999741--1120332110203232------00111342000000
Q ss_pred HHH---------HCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-------------CCCCCCCC-
Q ss_conf 998---------4065445779984589989946899999999975987899963445-------------68667876-
Q 005508 456 IEA---------TSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-------------QQRYSKLA- 512 (693)
Q Consensus 456 ika---------i~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr-------------~qryt~~A- 512 (693)
+.. .....++||.+|+.... +.....+++..+.+.|++++++...+. ..+++|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~Pv~vKlsp~~--~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i 271 (336)
T d1f76a_ 194 LTAIKNKQNDLQAMHHKYVPIAVKIAPDL--SEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPL 271 (336)
T ss_dssp HHHHHHHHHHHHHHHTSCCCEEEECCSCC--CHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGG
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 01233234556552057677402331023--4333466677888638530210001100230014432345542333205
Q ss_pred ---CHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHH-HHCCCCHHHHHHC
Q ss_conf ---4999999999829994499929878988799987139996789771787-6289703678740
Q 005508 513 ---DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA-LIKPWIFTEIKEQ 574 (693)
Q Consensus 513 ---dw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGa-L~nPwiF~eIk~~ 574 (693)
....++++++.++.++||||.|||.|++|+.+++. .||+.|+|+.++ +..|.++.+|.+.
T Consensus 272 ~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~--aGAsaVQv~Tal~~~Gp~ii~~I~~e 335 (336)
T d1f76a_ 272 QLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIA--AGASLVQIYSGFIFKGPPLIKEIVTH 335 (336)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHH--HTCSEEEESHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH--CCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 89999999999998089972999899799999999998--09969999789995293899999830
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.81 E-value=2.9e-17 Score=128.56 Aligned_cols=235 Identities=15% Similarity=0.119 Sum_probs=160.5
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCCCH------------------------
Q ss_conf 76764447821169388756989793999999999099989916510000002882------------------------
Q 005508 327 KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQA------------------------ 382 (693)
Q Consensus 327 ~~~p~ekk~l~l~nrl~LAPMt~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~------------------------ 382 (693)
+..+.+..++.|+|++.||.-.+-.-..++.+ ..+|+|.+.+.-+...+-. |++
T Consensus 49 ~~L~~~v~Gl~f~NPiglAAG~dk~~~~i~~~-~~lGfG~ve~gTvT~~p~~-GNp~PR~~r~~~~~~liN~~Gl~n~G~ 126 (409)
T d1tv5a1 49 IYACTNIKHLDFINPFGVAAGFDKNGVCIDSI-LKLGFSFIEIGTITPRGQT-GNAKPRIFRDVESRSIINSCGFNNMGC 126 (409)
T ss_dssp GGGCEEETTEEESSSEEECTTTTTTCSSHHHH-HTTTCSEEEEEEECSSCBC-CSCSCCEEEETTTTEEEECCCSCBSCH
T ss_pred CCCCEEECCEECCCCCEECCCCCCCHHHHHHH-HHCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 44466788764489687560668788999999-8668876995102303564-789732234543332102467776358
Q ss_pred HHH-H-HH--------HCCCCCCEEEEEECCCC----HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 344-5-33--------02679991999905888----9999999999765189869998388997431127743001379
Q 005508 383 SEW-A-LL--------RRHSSEDLFGVQICGAY----PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTK 448 (693)
Q Consensus 383 ~e~-~-ll--------~~h~~e~pigvQL~G~~----pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~r 448 (693)
... . +. .......++++.+..+. .......+.... ..++|+++||.+||... |..-+.+
T Consensus 127 ~~~~~~l~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~~~~-~~~aD~~elNiScPNt~------glr~~~~ 199 (409)
T d1tv5a1 127 DKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKI-GRYADYIAINVSSPNTP------GLRDNQE 199 (409)
T ss_dssp HHHHHHHHHHHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHH-GGGCSEEEEECCCTTST------TGGGGGS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEECCCCCCCC------CCCCCCC
T ss_conf 9999987777654430566654300231454420157888779999988-50143100010265433------4424568
Q ss_pred HHHHHHHHHHHCCCC---------------------------------------------------CCCEEEEECCCCCC
Q ss_conf 389999999840654---------------------------------------------------45779984589989
Q 005508 449 PMRMKGIIEATSGTV---------------------------------------------------DKPITIKVRTGYFE 477 (693)
Q Consensus 449 p~~l~eIikai~~~v---------------------------------------------------~iPVTVKiR~G~~e 477 (693)
+..+.++++++++.. ..||.||+....
T Consensus 200 ~~~L~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~-- 277 (409)
T d1tv5a1 200 AGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDL-- 277 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------------------------------CCCCSSSSSCCEEEEEECSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCC--
T ss_conf 899999999999998753012222211111110011110001122222211000000011012356786599858998--
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCC-----------CCCCCCC----CHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 9468999999999759878999634456-----------8667876----499999999982999449992987898879
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHGRTRQ-----------QRYSKLA----DWDYIYQCARKASDDLQVLGNGDIYSYLDW 542 (693)
Q Consensus 478 ~~~~a~~la~~L~e~GvdaItIHgRtr~-----------qryt~~A----dw~~I~~i~~~~~~~IPVIgNGdI~S~eDa 542 (693)
+..++.+++..+.+.|+++|++...+.. +.++|++ -...++++++.+...+||||+|||+|++|+
T Consensus 278 ~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da 357 (409)
T d1tv5a1 278 NQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDA 357 (409)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
T ss_conf 70246889999886065410113222255553342346776431017889999999999970899609998997999999
Q ss_pred HHHHHCCCCCCEEEECHHHHH-CCCCHHHHHHC
Q ss_conf 998713999678977178762-89703678740
Q 005508 543 NKHKSDCPELASCMIARGALI-KPWIFTEIKEQ 574 (693)
Q Consensus 543 ~~~l~~~~gaDgVMIGRGaL~-nPwiF~eIk~~ 574 (693)
.+++. .||+.|+|+.+++. .|.++.+|.++
T Consensus 358 ~e~i~--AGAs~VQv~T~li~~Gp~~v~~I~~~ 388 (409)
T d1tv5a1 358 LEKIE--AGASVCQLYSCLVFNGMKSAVQIKRE 388 (409)
T ss_dssp HHHHH--TTEEEEEESHHHHHHGGGHHHHHHHH
T ss_pred HHHHH--CCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99998--49978763067871192899999999
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.80 E-value=7.2e-17 Score=125.95 Aligned_cols=235 Identities=12% Similarity=0.077 Sum_probs=157.7
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHH---------------------CCCCHHHH-HH
Q ss_conf 644478211693887569897939999999990999899165100000---------------------02882344-53
Q 005508 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNL---------------------LQGQASEW-AL 387 (693)
Q Consensus 330 p~ekk~l~l~nrl~LAPMt~vtdlpFRrl~~~~Gadl~~TEMv~a~~L---------------------~~g~~~e~-~l 387 (693)
..+..++.|+||+++|.-.--.+...-+.+...|++.+++.-+...+- -......| ..
T Consensus 3 ~v~~~Gl~l~nPi~~aaG~~~~~~~~~~~~~~~g~g~vv~ktit~~p~~gnp~Pr~~~~~~~~~N~~G~~n~G~~~~~~~ 82 (312)
T d2b4ga1 3 KVNILGHEFSNPFMNAAGVLCTTEEDLRRMTESESGSLIGKSCTLAPRTGNPEPRYFGLPLGSINSMGLPNLGVDFYLSY 82 (312)
T ss_dssp CEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHH
T ss_pred CEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCHHEECCCCCCCHHHHHHHH
T ss_conf 37989987799868676888989999999997698789938536567789999808964710010366676019999998
Q ss_pred HHC-C-CCCCEEEEEECCCCHHHHHHHHHHHHH--HCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 302-6-799919999058889999999999765--189869998388997431127743001379389999999840654
Q 005508 388 LRR-H-SSEDLFGVQICGAYPDTLARTVELIDQ--QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV 463 (693)
Q Consensus 388 l~~-h-~~e~pigvQL~G~~pe~~a~AAe~l~~--~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v 463 (693)
+.. + ....|+++.|.|...+.+.+.++.+.+ ..++|+|+||++||... + +..+-.+++.+.++++++++.+
T Consensus 83 l~~~~~~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~----~-~~~~~~~~~~~~~i~~~v~~~~ 157 (312)
T d2b4ga1 83 AAQTHDYSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVP----G-KPQVGYDFDTTRTYLQKVSEAY 157 (312)
T ss_dssp HHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCST----T-CCCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCC----C-CHHHHCCHHHHHHHHHHHHCCC
T ss_conf 7775203554110132355332189999998776530265123203467867----6-1132204899999999863025
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCC-CCEEEEECC----------C---------CCCCCCCCC----CHHHHHH
Q ss_conf 457799845899899468999999999759-878999634----------4---------568667876----4999999
Q 005508 464 DKPITIKVRTGYFEGKNRIDSLIADIGTWG-ASAVTVHGR----------T---------RQQRYSKLA----DWDYIYQ 519 (693)
Q Consensus 464 ~iPVTVKiR~G~~e~~~~a~~la~~L~e~G-vdaItIHgR----------t---------r~qryt~~A----dw~~I~~ 519 (693)
.+|+.+|+..... ......++..+.+.+ ++.++.... + ....++|++ -..++.+
T Consensus 158 ~~pi~vKl~p~~~--~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~ 235 (312)
T d2b4ga1 158 GLPFGVKMPPYFD--IAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNA 235 (312)
T ss_dssp CSCEEEEECCCCC--HHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHH
T ss_pred CCCCEECCCCCCC--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 5641001243343--66799999998752123445430344565201025777533464334576544434023399999
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHH-CCCCHHHHHHC
Q ss_conf 99982999449992987898879998713999678977178762-89703678740
Q 005508 520 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI-KPWIFTEIKEQ 574 (693)
Q Consensus 520 i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~-nPwiF~eIk~~ 574 (693)
+++..+ ..||||+|+|.|++|+.+++. .||+.|+|+.+++. .|+++.+|.++
T Consensus 236 ~~~~~~-~~~Iig~GGI~s~~Da~e~i~--aGAs~Vqv~Tal~~~Gp~~i~~i~~~ 288 (312)
T d2b4ga1 236 FFRRCP-DKLVFGCGGVYSGEEAFLHIL--AGASMVQVGTALHDEGPIIFARLNKE 288 (312)
T ss_dssp HHHHCT-TSEEEEESSCCSHHHHHHHHH--HTEEEEEESHHHHHHCTTHHHHHHHH
T ss_pred HHHHCC-CCCEEECCCCCCHHHHHHHHH--CCCCHHEEEHHHHHCCCHHHHHHHHH
T ss_conf 999758-870664578478999999998--49985044155674091899999999
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3.3e-17 Score=128.24 Aligned_cols=239 Identities=11% Similarity=0.049 Sum_probs=156.2
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCC-----------------------CHHHH
Q ss_conf 7644478211693887569897939999999990999899165100000028-----------------------82344
Q 005508 329 HSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG-----------------------QASEW 385 (693)
Q Consensus 329 ~p~ekk~l~l~nrl~LAPMt~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~~g-----------------------~~~e~ 385 (693)
...+..++.|+||+++|.=..-....++. +..+|+|.+++.-+...+-... ....|
T Consensus 50 L~v~~~Gl~~~nPi~lAsG~~~~~~~i~~-~~~~G~G~vv~kTit~~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~ 128 (367)
T d1d3ga_ 50 LEVRVLGHKFRNPVGIAAGFDKHGEAVDG-LYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVV 128 (367)
T ss_dssp GCEEETTEEESSSEEECTTSSTTSSSHHH-HHHHTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHH
T ss_pred CCEEECCEECCCCCEECCCCCCCHHHHHH-HHHCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 75688998669986768487878999999-86358747861342466324577603221021112112247677546999
Q ss_pred H-HH--------HCCCCCCEEEEEECCCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC-CCCCCCHH
Q ss_conf 5-33--------02679991999905888-----9999999999765189869998388997431127743-00137938
Q 005508 386 A-LL--------RRHSSEDLFGVQICGAY-----PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAG-SCLLTKPM 450 (693)
Q Consensus 386 ~-ll--------~~h~~e~pigvQL~G~~-----pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~G-saLl~rp~ 450 (693)
. .+ +......|+++.|.++. .++...+.+.+ ..++|+++||+.||....-..... ..+.....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~~~~~~~~~~~~~~--~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~ 206 (367)
T d1d3ga_ 129 EHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVL--GPLADYLVVNVSSPNTAGLRSLQGKAELRRLLT 206 (367)
T ss_dssp HHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHH--GGGCSEEEEESCCTTSTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 988888754113434368638998346545078888887777776--531440024500032112221011110125788
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-------------CCCCCCCC----C
Q ss_conf 999999984065445779984589989946899999999975987899963445-------------68667876----4
Q 005508 451 RMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR-------------QQRYSKLA----D 513 (693)
Q Consensus 451 ~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr-------------~qryt~~A----d 513 (693)
...+.+..+...+++|+.+|+.... +..+...++..+.++|+++|++...+. ...++|++ -
T Consensus 207 ~~~~~~~~~~~~~~~Pv~vKlsP~~--~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~ 284 (367)
T d1d3ga_ 207 KVLQERDGLRRVHRPAVLVKIAPDL--TSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLS 284 (367)
T ss_dssp HHHHHHHTSCGGGCCEEEEEECSCC--CHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 8887653202245776301247641--00013446788876543102113332234454344211244321121110230
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHH-HHCCCCHHHHHHC
Q ss_conf 999999999829994499929878988799987139996789771787-6289703678740
Q 005508 514 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA-LIKPWIFTEIKEQ 574 (693)
Q Consensus 514 w~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGa-L~nPwiF~eIk~~ 574 (693)
...++.+++....++||||+|||.|++|+.+++. .|||.|+|+.++ +..|.++.+|.++
T Consensus 285 l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~--aGAs~VQi~Ta~~~~Gp~ii~~I~~~ 344 (367)
T d1d3ga_ 285 TQTIREMYALTQGRVPIIGVGGVSSGQDALEKIR--AGASLVQLYTALTFWGPPVVGKVKRE 344 (367)
T ss_dssp HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH--HTCSEEEESHHHHHHCTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH--CCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 8899999997389951999889799999999998--39978874177882390799999999
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.50 E-value=1.8e-11 Score=90.28 Aligned_cols=245 Identities=13% Similarity=0.140 Sum_probs=144.0
Q ss_pred CCCCCCCCCCCEEECCCCCCCC-------HHHHHHHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 4447821169388756989793-------999999999099989916510000002882344533026799919999058
Q 005508 331 REKKLIDFREKLYLAPLTTVGN-------LPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG 403 (693)
Q Consensus 331 ~ekk~l~l~nrl~LAPMt~vtd-------lpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G 403 (693)
.++.+.++..|++.|||++.+. ...-+.+...|.-+..+++...... ..........+.........+++..
T Consensus 27 t~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (329)
T d1p0ka_ 27 TKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKD-PSERLSYEIVRKENPNGLIFANLGS 105 (329)
T ss_dssp EEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTC-HHHHHHHHHHHHHCSSSCEEEEEET
T ss_pred EEECCEECCCCEEECCHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 798999848966988877765541379999999999982997203654212066-9998666567640776338885044
Q ss_pred CC-HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 88-99999999997651898699983889974311277430013793899999998406544577998458998994689
Q 005508 404 AY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 404 ~~-pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a 482 (693)
.. .+...+ .+. ..+++++.+|..||.......+. .....+.+.++.+++....|+.+|.=.... +
T Consensus 106 ~~~~~~~~~---~~~-~~g~~ai~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~i~~~~~~~vivk~v~~~~-~---- 171 (329)
T d1p0ka_ 106 EATAAQAKE---AVE-MIGANALQIHLNVIQEIVMPEGD-----RSFSGALKRIEQICSRVSVPVIVKEVGFGM-S---- 171 (329)
T ss_dssp TCCHHHHHH---HHH-HTTCSEEEEEECTTTTC-------------CTTHHHHHHHHHHHCSSCEEEEEESSCC-C----
T ss_pred CHHHHHHHH---HHH-HCCCCEEEECCCCCCHHHHCCCC-----CCCCCHHHHHHHHHHHCCCCCEEEECCCCC-H----
T ss_conf 304899999---999-76998898314443010001466-----432356999999999758985788637763-2----
Q ss_pred HHHHHHHHHCCCCEEEEECCCC----------CCC------CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 9999999975987899963445----------686------678764999999999829994499929878988799987
Q 005508 483 DSLIADIGTWGASAVTVHGRTR----------QQR------YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHK 546 (693)
Q Consensus 483 ~~la~~L~e~GvdaItIHgRtr----------~qr------yt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l 546 (693)
.+.+.++.++|+|+|.|.+.-- .+. -.+.+....+.++....+ ++|||+-|+|.+..|+.+++
T Consensus 172 ~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~-~v~viadGGIr~g~Dv~KAl 250 (329)
T d1p0ka_ 172 KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFP-ASTMIASGGLQDALDVAKAI 250 (329)
T ss_dssp HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHH
T ss_conf 99999999647999997678988754551112036766406768999999999984158-91699738846399999999
Q ss_pred HCCCCCCEEEECHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1399967897717876289703678740689999789999999999999986159
Q 005508 547 SDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601 (693)
Q Consensus 547 ~~~~gaDgVMIGRGaL~nPwiF~eIk~~~~~d~s~~Erl~il~~~~~~~le~~gs 601 (693)
. .|||+|||||.+|. .-...+.. -...-+++++.-+.-.+...|.
T Consensus 251 a--lGAdaV~iGr~~l~-----al~~~G~~---gv~~~l~~l~~el~~~m~~~G~ 295 (329)
T d1p0ka_ 251 A--LGASCTGMAGHFLK-----ALTDSGEE---GLLEEIQLILEELKLIMTVLGA 295 (329)
T ss_dssp H--TTCSEEEECHHHHH-----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHTC
T ss_pred H--CCCCCHHCCHHHHH-----HHCCCCHH---HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8--29993202478888-----76147799---9999999999999999998689
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=99.35 E-value=4e-11 Score=88.04 Aligned_cols=217 Identities=12% Similarity=0.048 Sum_probs=131.4
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCHHH------HHHHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 64447821169388756989793999------999999099989916510000002882344533026799919999058
Q 005508 330 SREKKLIDFREKLYLAPLTTVGNLPF------RRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG 403 (693)
Q Consensus 330 p~ekk~l~l~nrl~LAPMt~vtdlpF------Rrl~~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G 403 (693)
..+.-+..+++|+++|||++.+.... -+.+...|..+..++..... .......|-.++......++.+|+..
T Consensus 27 st~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (310)
T d1vcfa1 27 TTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILL--ERPEALRSFRVRKVAPKALLIANLGL 104 (310)
T ss_dssp CEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHH--HCTTTHHHHCCTTTCSSSCEEEEEEG
T ss_pred CEEECCEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHCC--HHHHHHCCCCHHHHCCCCCEEEEECC
T ss_conf 7478999868987986800101125589999999999839976743430130--33545213055975677435631013
Q ss_pred CCHHHHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 8899999-999997651898699983889974311277430013793899999998406544577998458998994689
Q 005508 404 AYPDTLA-RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRI 482 (693)
Q Consensus 404 ~~pe~~a-~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a 482 (693)
....... .....+.+..+++++.+|..||........ .......++...+. ....|+.+|.-.+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~p~~~k~v~~~~~----- 172 (310)
T d1vcfa1 105 AQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGD------TDFRGLVERLAELL-PLPFPVMVKEVGHGLS----- 172 (310)
T ss_dssp GGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSC------CCCTTHHHHHHHHC-SCSSCEEEECSSSCCC-----
T ss_pred CCHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCC------CCCCCHHHHHHHHH-HCCCCCEEEEECCCCC-----
T ss_conf 43035547888877775188752044454344302565------11166799999976-4168812445347652-----
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCC-------C-----------CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
Q ss_conf 999999997598789996344568-------6-----------6787649999999998299944999298789887999
Q 005508 483 DSLIADIGTWGASAVTVHGRTRQQ-------R-----------YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 483 ~~la~~L~e~GvdaItIHgRtr~q-------r-----------yt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~ 544 (693)
.+.+.++.++|+++|.|.++-..+ + ..+.+-.+.+..+.+... ++|||+.|||.+..|+.+
T Consensus 173 ~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~-~i~Ii~dGGIr~g~Dv~K 251 (310)
T d1vcfa1 173 REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP-HLPLVASGGVYTGTDGAK 251 (310)
T ss_dssp HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS-SSCEEEESSCCSHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHH
T ss_conf 9999999985998898246555542004000025730112232113689999999986358-981775899785699999
Q ss_pred HHHCCCCCCEEEECHHHHH
Q ss_conf 8713999678977178762
Q 005508 545 HKSDCPELASCMIARGALI 563 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRGaL~ 563 (693)
++. .|||+|||||++|.
T Consensus 252 ALa--lGAdaV~iGr~~l~ 268 (310)
T d1vcfa1 252 ALA--LGADLLAVARPLLR 268 (310)
T ss_dssp HHH--HTCSEEEECGGGHH
T ss_pred HHH--HCCCEEEEHHHHHH
T ss_conf 999--39997447489999
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=4.9e-10 Score=80.84 Aligned_cols=214 Identities=10% Similarity=-0.004 Sum_probs=145.1
Q ss_pred CCCCCCCCCCCCEEECCCCCCC------CHHHHHHHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 6444782116938875698979------3999999999099989916510000002882344533026799919999058
Q 005508 330 SREKKLIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG 403 (693)
Q Consensus 330 p~ekk~l~l~nrl~LAPMt~vt------dlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G 403 (693)
..+.-+..|.-|++.|||++.+ +...-+.+.++|..++.+.+..+.. .+ +.....+.+...|+..
T Consensus 60 st~~lG~~l~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~------e~---v~~~~~~~~~~~ql~~ 130 (349)
T d1tb3a1 60 RTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSL------ED---IVAAAPEGFRWFQLYM 130 (349)
T ss_dssp CEEETTEEESSSEEECCCSCGGGTCTTTHHHHHHHHHHHTCCEEECTTCSSCH------HH---HHHHSTTCCEEEECCC
T ss_pred CEEECCCCCCCEEEECCHHCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC------HH---HHHHCCCCCEEEEEEC
T ss_conf 54489817244279752001455564046677776642245134225454430------24---4665357871664103
Q ss_pred CCHH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCC----CCC----------------------CCCCCCCHHHHHHHH
Q ss_conf 8899-9999999976518986999838899743112----774----------------------300137938999999
Q 005508 404 AYPD-TLARTVELIDQQCTVDFIDINMGCPIDIVVN----KGA----------------------GSCLLTKPMRMKGII 456 (693)
Q Consensus 404 ~~pe-~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~----~G~----------------------GsaLl~rp~~l~eIi 456 (693)
.... ......+++. .+|+..+-+....|..-.+. .+. ...-...+.+.-+-+
T Consensus 131 ~~~~~~~~~~i~~~~-~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 209 (349)
T d1tb3a1 131 KSDWDFNKQMVQRAE-ALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDL 209 (349)
T ss_dssp CSCTTHHHHHHHHHH-HHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-------------CCCCHHHH
T ss_pred CCCHHHHHHHHHHHH-HCCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 368898999999998-6398632244574554010255541356785424556665532011122321266778898999
Q ss_pred HHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 98406544577998458998994689999999997598789996344568667876499999999982999449992987
Q 005508 457 EATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDI 536 (693)
Q Consensus 457 kai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI 536 (693)
..+++..+.|+.+|--.+. +-+..+.+.|+++|.|.+.-..|--..++-.+.+.++++.+..++|||+.|||
T Consensus 210 ~~l~~~~~~pii~Kgi~~~--------~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGI 281 (349)
T d1tb3a1 210 SLLQSITRLPIILKGILTK--------EDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGV 281 (349)
T ss_dssp HHHHTTCCSCEEEEEECSH--------HHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSC
T ss_pred HHHHHHCCCCCCCCHHHHH--------HHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHCCEEEECCCCCEEEEECCCC
T ss_conf 9999854788300010006--------88999998512100110211000024653122121022015787568860676
Q ss_pred CCHHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf 898879998713999678977178762
Q 005508 537 YSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 537 ~S~eDa~~~l~~~~gaDgVMIGRGaL~ 563 (693)
.+..|+.++|. -|||.|+|||.+|.
T Consensus 282 R~G~Dv~KALA--LGA~~V~igrp~L~ 306 (349)
T d1tb3a1 282 RTGTDVLKALA--LGARCIFLGRPILW 306 (349)
T ss_dssp CSHHHHHHHHH--TTCSCEEESHHHHH
T ss_pred CCHHHHHHHHH--CCCCEEEECHHHHH
T ss_conf 75778999998--58998998769999
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.26 E-value=9.1e-11 Score=85.64 Aligned_cols=125 Identities=10% Similarity=0.154 Sum_probs=86.3
Q ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 189869998388997431127743001379389999999840654-4577998458998994689999999997598789
Q 005508 419 QCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAV 497 (693)
Q Consensus 419 ~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaI 497 (693)
.+|+|.|.+++.++... ... +.++++..+... ...+...... ..-+.++.+.|+++|
T Consensus 86 ~agad~v~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~~v~~~~~t---------~~~a~~~~~~g~d~i 143 (222)
T d1y0ea_ 86 ESQCEVIALDATLQQRP----------KET---LDELVSYIRTHAPNVEIMADIAT---------VEEAKNAARLGFDYI 143 (222)
T ss_dssp HHTCSEEEEECSCSCCS----------SSC---HHHHHHHHHHHCTTSEEEEECSS---------HHHHHHHHHTTCSEE
T ss_pred HCCCCEEEEECCCCCCC----------CCH---HHHHHHHHHHHCCCEEEEECCCC---------HHHHHHHHHCCCCEE
T ss_conf 74998999651026652----------020---99999999972885278606798---------999999997089868
Q ss_pred EEECC----CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHH
Q ss_conf 99634----45686678764999999999829994499929878988799987139996789771787628970367
Q 005508 498 TVHGR----TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 570 (693)
Q Consensus 498 tIHgR----tr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~e 570 (693)
.+..+ +..+......+|+.+.++++.+ +||||++|||.|.+|+.++++ .|||+||||+ +|.+||.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~iPVia~GGI~t~~d~~~~~~--~GAdgV~iGs-Ai~rp~~~~~ 215 (222)
T d1y0ea_ 144 GTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGNVITPDMYKRVMD--LGVHCSVVGG-AITRPKEITK 215 (222)
T ss_dssp ECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESSCCSHHHHHHHHH--TTCSEEEECH-HHHCHHHHHH
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHH--CCCCEEEECH-HHCCHHHHHH
T ss_conf 8834677534667651164899999997357--885898689899999999998--6999999831-1169999999
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.08 E-value=2.2e-08 Score=69.90 Aligned_cols=211 Identities=12% Similarity=0.027 Sum_probs=140.1
Q ss_pred CCCCCCCCCCCCEEECCCCCCC------CHHHHHHHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 6444782116938875698979------3999999999099989916510000002882344533026799919999058
Q 005508 330 SREKKLIDFREKLYLAPLTTVG------NLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG 403 (693)
Q Consensus 330 p~ekk~l~l~nrl~LAPMt~vt------dlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G 403 (693)
.++.-+.+|.-|++.+|||+.+ +....+.+..+|..+..+.+..... .+.. . .....+..|...
T Consensus 60 st~~lGk~ls~Pi~Iapmtgg~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~~~------~e~~---~-~~~~~~~~~~~~ 129 (353)
T d1p4ca_ 60 QAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSI------EDLA---R-QCDGDLWFQLYV 129 (353)
T ss_dssp CEEETTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTCSSCH------HHHH---H-HCCSCEEEEECC
T ss_pred CEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC------HHHH---H-HCCCCEEEEECC
T ss_conf 55789817367545424344553231025789988887411223456321220------5678---8-569962552034
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC---------------------------CCC---CCCCC---CCCHH
Q ss_conf 8899999999997651898699983889974311---------------------------277---43001---37938
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVV---------------------------NKG---AGSCL---LTKPM 450 (693)
Q Consensus 404 ~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~---------------------------~~G---~GsaL---l~rp~ 450 (693)
.++.......+.+. .+|+..+-++..-|..-.+ ... ....+ .-.+.
T Consensus 130 ~~~~~~~~l~~~~~-~~g~~~l~~~vd~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (353)
T d1p4ca_ 130 IHREIAQGMVLKAL-HTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDAS 208 (353)
T ss_dssp SSHHHHHHHHHHHH-HTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTT
T ss_pred CCHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 32899998699999-80986304521652467536665410015312331002332235554333102578887335777
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 99999998406544577998458998994689999999997598789996344568667876499999999982999449
Q 005508 451 RMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQV 530 (693)
Q Consensus 451 ~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPV 530 (693)
+..+-++.++...+.|+.+|--.++ .-+..+.+.|++++.+...-..+-.+.+.-++.+.+++... ++||
T Consensus 209 ~~~~~i~~l~~~~~~~i~~kgv~~~--------~~~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~--~~~v 278 (353)
T d1p4ca_ 209 FNWEALRWLRDLWPHKLLVKGLLSA--------EDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT--GKPV 278 (353)
T ss_dssp CCHHHHHHHHHHCCSEEEEEEECCH--------HHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH--CSCE
T ss_pred CCHHHHHHHHHCCCCCHHHHCCHHH--------HHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHCCCCHHCCC--CCCE
T ss_conf 7899999998624652223200345--------66777776388613201333223356554001053021134--5433
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf 992987898879998713999678977178762
Q 005508 531 LGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 531 IgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~ 563 (693)
|+.|||.+.-|+.++|. -|||.|++||.+|.
T Consensus 279 iasGGIR~G~Dv~KALa--LGAd~vgigrp~L~ 309 (353)
T d1p4ca_ 279 LIDSGFRRGSDIVKALA--LGAEAVLLGRATLY 309 (353)
T ss_dssp EECSSCCSHHHHHHHHH--TTCSCEEESHHHHH
T ss_pred EECCCCCCHHHHHHHHH--CCCCEEEECHHHHH
T ss_conf 64477676678999998--58998987689999
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.07 E-value=5.6e-08 Score=67.20 Aligned_cols=216 Identities=14% Similarity=0.026 Sum_probs=143.6
Q ss_pred CCCCCCCCCCCCEEECCCCCC------CCHHHHHHHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 644478211693887569897------93999999999099989916510000002882344533026799919999058
Q 005508 330 SREKKLIDFREKLYLAPLTTV------GNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG 403 (693)
Q Consensus 330 p~ekk~l~l~nrl~LAPMt~v------tdlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G 403 (693)
..+.-+..|.-|++.+|||+. ++....+.+..+|..+..+-+..... .+.+ ...+.+...|+..
T Consensus 61 st~~lG~~~~~P~~IspMtgg~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~------~~~~----~~~~~~~~~~~~~ 130 (359)
T d1goxa_ 61 TTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSV------EEVA----STGPGIRFFQLYV 130 (359)
T ss_dssp CEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCH------HHHH----TTCCCCEEEEECC
T ss_pred CEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC------HHHH----HHCCCCCCCCCCC
T ss_conf 55678835578615265323466778647876566886297223345545650------2367----7469984112222
Q ss_pred CCH-HHHHHHHHHHHHHCCCCEEEECCCCCCCCCC----CCCCCC-------CCC----C------------------CH
Q ss_conf 889-9999999997651898699983889974311----277430-------013----7------------------93
Q 005508 404 AYP-DTLARTVELIDQQCTVDFIDINMGCPIDIVV----NKGAGS-------CLL----T------------------KP 449 (693)
Q Consensus 404 ~~p-e~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~----~~G~Gs-------aLl----~------------------rp 449 (693)
... .......+.+. .++++.+-++..-|+...+ +.+... .+. . ++
T Consensus 131 ~~~~~~~~~l~~~~~-~a~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (359)
T d1goxa_ 131 YKDRNVVAQLVRRAE-RAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDR 209 (359)
T ss_dssp BSSHHHHHHHHHHHH-HTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCT
T ss_pred CHHHHHHHHHHHHHH-HHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 106778999999888-7540334422241022234441244235785331456655303667655641179999851378
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 89999999840654457799845899899468999999999759878999634456866787649999999998299944
Q 005508 450 MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ 529 (693)
Q Consensus 450 ~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IP 529 (693)
....+-++.+++..+.|+.+|-=.++ .-+..+.+.|++.+.+...-..+....+.-.+.+..+++.+..++|
T Consensus 210 ~~~~~~v~~l~~~~~~~~~~kg~~~~--------~da~~a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~ 281 (359)
T d1goxa_ 210 SLSWKDVAWLQTITSLPILVKGVITA--------EDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIP 281 (359)
T ss_dssp TCCHHHHHHHHHHCCSCEEEECCCSH--------HHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSC
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCH--------HHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHCHHHHHCCCCCCC
T ss_conf 89999999998615665322002446--------8889998706653220321110000000025445566503478621
Q ss_pred EEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCC
Q ss_conf 9992987898879998713999678977178762897
Q 005508 530 VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 530 VIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPw 566 (693)
||+.|||.+.-|+.++|. -|||.|+|||.+|.-+.
T Consensus 282 iiadGGIR~G~Di~KALa--LGAd~vgigrp~L~~la 316 (359)
T d1goxa_ 282 VFLDGGVRRGTDVFKALA--LGAAGVFIGRPVVFSLA 316 (359)
T ss_dssp EEEESSCCSHHHHHHHHH--HTCSEEEECHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH--CCCCEEEECHHHHHHHH
T ss_conf 465057575778999998--48998987689999998
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.03 E-value=2.4e-09 Score=76.25 Aligned_cols=127 Identities=12% Similarity=0.064 Sum_probs=80.2
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99976518986999838899743112774300137938999999984065445779984589989946899999999975
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW 492 (693)
Q Consensus 413 Ae~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~ 492 (693)
...+. .+|+|.+-+...-.. . .....+.+.++.+.......+...--. ..+-+.++.++
T Consensus 91 ~~~~~-~~gad~i~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~~~v~~~v~--------t~~~a~~a~~~ 149 (230)
T d1yxya1 91 VDQLA-ALNIAVIAMDCTKRD--------R----HDGLDIASFIRQVKEKYPNQLLMADIS--------TFDEGLVAHQA 149 (230)
T ss_dssp HHHHH-TTTCSEEEEECCSSC--------C----TTCCCHHHHHHHHHHHCTTCEEEEECS--------SHHHHHHHHHT
T ss_pred HHHHH-HCCCCEEEEECCCCC--------C----CCHHHHHHHHHHHHHCCCCCEEECCCC--------CHHHHHHHHHC
T ss_conf 98888-649989998503565--------3----104449999999984189846734779--------89999999860
Q ss_pred CCCEEEEECCCCCCCCCC--CCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCC
Q ss_conf 987899963445686678--76499999999982999449992987898879998713999678977178762897
Q 005508 493 GASAVTVHGRTRQQRYSK--LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 493 GvdaItIHgRtr~qryt~--~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPw 566 (693)
|+++|.+++|...+.... ...+. +..+.... ++|||++|||.|++|+.++++ .|+|+||||++ +.+|.
T Consensus 150 Gad~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~ipvia~GGI~t~~d~~~al~--~GAd~V~vGsA-i~~p~ 219 (230)
T d1yxya1 150 GIDFVGTTLSGYTPYSRQEAGPDVA-LIEALCKA--GIAVIAEGKIHSPEEAKKIND--LGVAGIVVGGA-ITRPK 219 (230)
T ss_dssp TCSEEECTTTTSSTTSCCSSSCCHH-HHHHHHHT--TCCEEEESCCCSHHHHHHHHT--TCCSEEEECHH-HHCHH
T ss_pred CCCEEEEECCCCCCCCCCCCHHHHH-HHHHHHCC--CCEEEEECCCCCHHHHHHHHH--CCCCEEEECHH-HCCHH
T ss_conf 8888986253442355234568888-99987337--982997489999999999998--69999998924-34989
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=4.7e-08 Score=67.70 Aligned_cols=197 Identities=20% Similarity=0.213 Sum_probs=123.3
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHCC-CCEEEECCCCCCHHCCCCHHHHH-HH-HCCCCCCEEEEEECCCCHHHHH
Q ss_conf 782116938875698979399999999909-99899165100000028823445-33-0267999199990588899999
Q 005508 334 KLIDFREKLYLAPLTTVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWA-LL-RRHSSEDLFGVQICGAYPDTLA 410 (693)
Q Consensus 334 k~l~l~nrl~LAPMt~vtdlpFRrl~~~~G-adl~~TEMv~a~~L~~g~~~e~~-ll-~~h~~e~pigvQL~G~~pe~~a 410 (693)
+.+.|+-|++.|||.+|++..+-....++| .+++...+ ...++. .+ ........+++-+ |-+|+.+.
T Consensus 32 ~~l~~~iPIIaa~MdtV~~~~mA~als~~GGlGvi~r~~---------~~e~~~~~i~~vk~~~~~v~~~v-gv~~~~~e 101 (330)
T d1vrda1 32 RQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNL---------TPDEQARQVSIVKKTRLLVGAAV-GTSPETME 101 (330)
T ss_dssp SSCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSS---------CHHHHHHHHHHHHTCCBCCEEEE-CSSTTHHH
T ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCC---------CHHHHHHHHHHHHHHCCEEEEEE-ECCHHHHH
T ss_conf 574668888968988748999999999789917860355---------62566779998754164799998-14889999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99999765189869998388997431127743001379389999999840654-45779984589989946899999999
Q 005508 411 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADI 489 (693)
Q Consensus 411 ~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G~~e~~~~a~~la~~L 489 (693)
++..++ ++|+|.|-|..+. | .+..+.+.++.++... ++||.+.-=. +.+.+..|
T Consensus 102 ~~~~li--~agvd~ivId~A~--------G-------~~~~~~~~ik~ik~~~~~~~viaGnV~--------t~~~a~~l 156 (330)
T d1vrda1 102 RVEKLV--KAGVDVIVIDTAH--------G-------HSRRVIETLEMIKADYPDLPVVAGNVA--------TPEGTEAL 156 (330)
T ss_dssp HHHHHH--HTTCSEEEECCSC--------C-------SSHHHHHHHHHHHHHCTTSCEEEEEEC--------SHHHHHHH
T ss_pred HHHHHH--HCCCCEEEEECCC--------C-------CCHHHHHHHHHHHHHCCCCCEEEECHH--------HHHHHHHH
T ss_conf 999999--8799889994688--------7-------733377999998875899878950306--------89999999
Q ss_pred HHCCCCEEEEEC------CCCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHH
Q ss_conf 975987899963------445686678764999999999829-9944999298789887999871399967897717876
Q 005508 490 GTWGASAVTVHG------RTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 490 ~e~GvdaItIHg------Rtr~qryt~~Adw~~I~~i~~~~~-~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL 562 (693)
.++|+|+|.|-. -||...-.+...+..+.+|.+... ..+|||+.|+|.+..|+.++|. .|||+||+|.-+.
T Consensus 157 ~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla--~GAd~Vm~Gs~fa 234 (330)
T d1vrda1 157 IKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALA--AGAESVMVGSIFA 234 (330)
T ss_dssp HHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHH--TTCSEEEESHHHH
T ss_pred HHCCCCEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHEEEE--CCCCEEEECCHHE
T ss_conf 98389988405326734465013321125420577899999755966993277145875310101--0476346332100
Q ss_pred HCCCC
Q ss_conf 28970
Q 005508 563 IKPWI 567 (693)
Q Consensus 563 ~nPwi 567 (693)
.-.--
T Consensus 235 ~~~E~ 239 (330)
T d1vrda1 235 GTEEA 239 (330)
T ss_dssp TBTTS
T ss_pred EECCC
T ss_conf 11125
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.99 E-value=2.4e-08 Score=69.64 Aligned_cols=206 Identities=12% Similarity=0.037 Sum_probs=127.4
Q ss_pred HHHHCCCCEEEECCCCCC-HHCCCCHHHHHHHHCCCCCCEEEEEECCCC--HH--------HHHHHHHHHHHHCCCCEEE
Q ss_conf 999909998991651000-000288234453302679991999905888--99--------9999999976518986999
Q 005508 358 VCKVLGADVTCGEMAMCT-NLLQGQASEWALLRRHSSEDLFGVQICGAY--PD--------TLARTVELIDQQCTVDFID 426 (693)
Q Consensus 358 l~~~~Gadl~~TEMv~a~-~L~~g~~~e~~ll~~h~~e~pigvQL~G~~--pe--------~~a~AAe~l~~~aG~D~ID 426 (693)
.....|||-++---+.+. .-......-+.+++.-..+..+-+|++|+- .+ .+..|.+++. +|+|-|=
T Consensus 56 ~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~--~GadKVv 133 (323)
T d1jvna1 56 KYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR--SGADKVS 133 (323)
T ss_dssp HHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH--HTCSEEE
T ss_pred HHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHH--CCCCEEE
T ss_conf 99987999899997868877767774079999863025664699845746388853100002689999997--4987687
Q ss_pred ECCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCEEEEE--------------------------------
Q ss_conf 8388997--4311277430013793899999998406-5445779984--------------------------------
Q 005508 427 INMGCPI--DIVVNKGAGSCLLTKPMRMKGIIEATSG-TVDKPITIKV-------------------------------- 471 (693)
Q Consensus 427 LN~GCP~--~~v~~~G~GsaLl~rp~~l~eIikai~~-~v~iPVTVKi-------------------------------- 471 (693)
||-..-. ..+.. =+.+..+|.++.++++..-. .+-+-+-+|-
T Consensus 134 I~T~ai~~p~~~~e---~~~~~~n~~li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~ 210 (323)
T d1jvna1 134 IGTDAVYAAEKYYE---LGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCT 210 (323)
T ss_dssp ECHHHHHHHHHHHH---TTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEE
T ss_pred ECHHHHHCHHHHHH---HHHHCCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 25377608477788---775034311599999973984089999987425665443333311123456777654049999
Q ss_pred CCCCCCC-HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 5899899-468999999999759878999634456866787649999999998299944999298789887999871399
Q 005508 472 RTGYFEG-KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCP 550 (693)
Q Consensus 472 R~G~~e~-~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~ 550 (693)
--||.+. .-...+++..+++.|+..|.++...+++..+| .|.+.+.++.+.+ ++|||++|||.+++|+.+++.. .
T Consensus 211 ~~gg~~~t~~~l~~~i~~~~~~G~GEIlltdIdrDGt~~G-~D~el~~~i~~~~--~iPiIasGGi~s~~di~~ll~~-~ 286 (323)
T d1jvna1 211 IKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSG-YDLELIEHVKDAV--KIPVIASSGAGVPEHFEEAFLK-T 286 (323)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSC-CCHHHHHHHHHHC--SSCEEECSCCCSHHHHHHHHHH-S
T ss_pred ECCCEEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCC-CCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHH-C
T ss_conf 7098573273388776554125742367775136655343-1116789999748--9899998999999999999986-8
Q ss_pred CCCEEEECHHHHHCCCCHHHHH
Q ss_conf 9678977178762897036787
Q 005508 551 ELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 551 gaDgVMIGRGaL~nPwiF~eIk 572 (693)
+++||.+|+.+.-+-.=+.+++
T Consensus 287 ~v~gv~~gs~~~~~~~si~elK 308 (323)
T d1jvna1 287 RADACLGAGMFHRGEFTVNDVK 308 (323)
T ss_dssp CCSEEEESHHHHTTSCCHHHHH
T ss_pred CCEEEEEHHHHHCCCCCHHHHH
T ss_conf 9849978037776998999999
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.86 E-value=7.5e-08 Score=66.40 Aligned_cols=198 Identities=14% Similarity=0.087 Sum_probs=120.6
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHC-CCCEEEECCCCCCHHCCCCHHHHHHHHCCCC----------CCEEEEEEC
Q ss_conf 78211693887569897939999999990-9998991651000000288234453302679----------991999905
Q 005508 334 KLIDFREKLYLAPLTTVGNLPFRRVCKVL-GADVTCGEMAMCTNLLQGQASEWALLRRHSS----------EDLFGVQIC 402 (693)
Q Consensus 334 k~l~l~nrl~LAPMt~vtdlpFRrl~~~~-Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~----------e~pigvQL~ 402 (693)
+.+.|+-|++.|||.+|+...+-....++ |.+++-..+ ..... ..+...++.+.. .-.+++-+
T Consensus 41 ~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~~-~~e~~----~~ev~~v~~~~~~p~~~~~~~~~l~v~aav- 114 (378)
T d1jr1a1 41 KKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNC-TPEFQ----ANEVRKVKKYEQYPLASKDAKKQLLCGAAI- 114 (378)
T ss_dssp SSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECCSS-CHHHH----HHHHHHHHTSCCCTTCCBCTTSCBCCEEEE-
T ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCC-CHHHH----HHHHHEEHHHHHCCCCCCCCCCCEEEEEEE-
T ss_conf 785689987979998738899999999789946976999-99999----988764110432764333554678999995-
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCHHH
Q ss_conf 8889999999999765189869998388997431127743001379389999999840654-457799845899899468
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 403 G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G~~e~~~~ 481 (693)
|-.++....+.. +. .+|+|.|-|....+. ...+.+.++.++... ++|+.+.-=.
T Consensus 115 g~~~~~~~~~~~-l~-~agv~vi~id~a~g~---------------~~~~~~~i~~ik~~~~~~~iIaGnVa-------- 169 (378)
T d1jr1a1 115 GTHEDDKYRLDL-LA-LAGVDVVVLDSSQGN---------------SIFQINMIKYMKEKYPNLQVIGGNVV-------- 169 (378)
T ss_dssp CSSTHHHHHHHH-HH-HHTCCEEEECCSSCC---------------SHHHHHHHHHHHHHSTTCEEEEEEEC--------
T ss_pred CCCHHHHHHHHH-HH-HHCCCEEEEECCCCC---------------CHHHHHHHHHHHHHCCCCCEEECCCC--------
T ss_conf 668778999999-97-515555764036762---------------02357999999987899725302201--------
Q ss_pred HHHHHHHHHHCCCCEEEEECCC------CCCCCCCCCCHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 9999999997598789996344------5686678764999999999829-99449992987898879998713999678
Q 005508 482 IDSLIADIGTWGASAVTVHGRT------RQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELAS 554 (693)
Q Consensus 482 a~~la~~L~e~GvdaItIHgRt------r~qryt~~Adw~~I~~i~~~~~-~~IPVIgNGdI~S~eDa~~~l~~~~gaDg 554 (693)
+.+-+..|.++|+|+|.|-... |...-.+.+.+..+..|.+... ..+|||+-|||.+..|+-++|. .|||+
T Consensus 170 T~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla--~GAd~ 247 (378)
T d1jr1a1 170 TAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALA--LGAST 247 (378)
T ss_dssp SHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH--TTCSE
T ss_pred CHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEE--EECCE
T ss_conf 2999999998299978603313544445422234766520256788751156985342533354773246888--60543
Q ss_pred EEECHHHHHC
Q ss_conf 9771787628
Q 005508 555 CMIARGALIK 564 (693)
Q Consensus 555 VMIGRGaL~n 564 (693)
||+|.-+..-
T Consensus 248 VMmGs~fAgt 257 (378)
T d1jr1a1 248 VMMGSLLAAT 257 (378)
T ss_dssp EEESTTTTTB
T ss_pred EEECCEEEEE
T ss_conf 5532321342
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.84 E-value=4.2e-07 Score=61.47 Aligned_cols=198 Identities=17% Similarity=0.133 Sum_probs=120.3
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHCC-CCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 782116938875698979399999999909-9989916510000002882344533026799919999058889999999
Q 005508 334 KLIDFREKLYLAPLTTVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLART 412 (693)
Q Consensus 334 k~l~l~nrl~LAPMt~vtdlpFRrl~~~~G-adl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~A 412 (693)
+.+.|.-|++.|||-+|++..+-....++| .+++.-.+..... ...............+++-+ |-.++.+.++
T Consensus 39 ~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~e~-----~~~~~~~~~~~~~~~v~aav-Gv~~~~~er~ 112 (365)
T d1zfja1 39 DNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSITEQ-----AEEVRKVKRSEGRLLVAAAV-GVTSDTFERA 112 (365)
T ss_dssp TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHH-----HHHHHHHHHHTSCBCCEEEE-CSSTTHHHHH
T ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHH-----HHHHHHHHHCCCCEEEEEEE-CCCCHHHHHH
T ss_conf 89526898897898876888999999977991697486678998-----87766544303756999994-4681277899
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999765189869998388997431127743001379389999999840654-4577998458998994689999999997
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGT 491 (693)
Q Consensus 413 Ae~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G~~e~~~~a~~la~~L~e 491 (693)
..++ ++|+|.|=|... .| ....+.+.++.++... ++|+.+.-=. +.+-+..|.+
T Consensus 113 ~~l~--~agvd~ivID~A--------~G-------~s~~~~~~i~~ik~~~~~~~iIaGNV~--------T~e~a~~L~~ 167 (365)
T d1zfja1 113 EALF--EAGADAIVIDTA--------HG-------HSAGVLRKIAEIRAHFPNRTLIAGNIA--------TAEGARALYD 167 (365)
T ss_dssp HHHH--HHTCSEEEECCS--------CT-------TCHHHHHHHHHHHHHCSSSCEEEEEEC--------SHHHHHHHHH
T ss_pred HHHH--HCCCCEEEEECC--------CC-------CCCCHHHHHHHHHHHCCCCCEEECCCC--------CHHHHHHHHH
T ss_conf 9999--869988999788--------65-------543214788999865887644411343--------4899999986
Q ss_pred CCCCEEEEECC------CCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHC
Q ss_conf 59878999634------45686678764999999999829-994499929878988799987139996789771787628
Q 005508 492 WGASAVTVHGR------TRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 564 (693)
Q Consensus 492 ~GvdaItIHgR------tr~qryt~~Adw~~I~~i~~~~~-~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~n 564 (693)
+|+|+|-|-.. ||.+.-.+.+-+..|.+|++... ..+|||+-|+|.+.-|+-++|. .|||+||+|.-+-.-
T Consensus 168 aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla--~GAd~VMlG~~lAg~ 245 (365)
T d1zfja1 168 AGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALA--AGGNAVMLGSMFAGT 245 (365)
T ss_dssp TTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHH--TTCSEEEESTTTTTB
T ss_pred CCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHH--CCCCEEEECCHHCCC
T ss_conf 697637864025644567630134224213899999999757956980588476206665532--158789864221046
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=98.84 E-value=9.3e-08 Score=65.76 Aligned_cols=204 Identities=17% Similarity=0.160 Sum_probs=123.6
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHC-CCCEEEECCCCCCH------H--------C--CC----CHHHH-------
Q ss_conf 78211693887569897939999999990-99989916510000------0--------0--28----82344-------
Q 005508 334 KLIDFREKLYLAPLTTVGNLPFRRVCKVL-GADVTCGEMAMCTN------L--------L--QG----QASEW------- 385 (693)
Q Consensus 334 k~l~l~nrl~LAPMt~vtdlpFRrl~~~~-Gadl~~TEMv~a~~------L--------~--~g----~~~e~------- 385 (693)
+++.|.-|++-|||-+|++..+-....++ |.+++.-.|-.-.- + + .+ ...++
T Consensus 35 ~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~~ie~q~~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~ 114 (388)
T d1eepa_ 35 KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHL 114 (388)
T ss_dssp SSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHHHHHHHHHTCC-------------------------
T ss_pred CCEECCCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 87766998771698887889999999987988999089999999999998623004452003676331022330055442
Q ss_pred ------HHH---HCCC------CC-CEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf ------533---0267------99-9199990588899999999997651898699983889974311277430013793
Q 005508 386 ------ALL---RRHS------SE-DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKP 449 (693)
Q Consensus 386 ------~ll---~~h~------~e-~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp 449 (693)
..+ ...+ .+ -.+++-+ |..++...++..++ ++|+|.|=|.... | ..
T Consensus 115 ~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAv-g~~~~~~~ra~~L~--~aG~D~ivID~Ah--------G-------~s 176 (388)
T d1eepa_ 115 EKSDAYKNAEHKEDFPNACKDLNNKLRVGAAV-SIDIDTIERVEELV--KAHVDILVIDSAH--------G-------HS 176 (388)
T ss_dssp -------------CCTTCCBCTTSCBCCEEEE-CSCTTHHHHHHHHH--HTTCSEEEECCSC--------C-------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCCHHHHHHHHHHH--HHCCCEEEEECCC--------C-------CH
T ss_conf 25478771888765067776552241012205-89789999999877--5125454310366--------3-------16
Q ss_pred HHHHHHHHHHCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEC------CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 89999999840654-45779984589989946899999999975987899963------445686678764999999999
Q 005508 450 MRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHG------RTRQQRYSKLADWDYIYQCAR 522 (693)
Q Consensus 450 ~~l~eIikai~~~v-~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHg------Rtr~qryt~~Adw~~I~~i~~ 522 (693)
..+.++++.++... ++||.+.-=. +.+-+..|.++|+|+|-|-- .||...-.+.+-+..+..|.+
T Consensus 177 ~~~~~~i~~ik~~~~~v~vIaGNV~--------T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~ 248 (388)
T d1eepa_ 177 TRIIELIKKIKTKYPNLDLIAGNIV--------TKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYE 248 (388)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEEC--------SHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEECCCC--------CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 7799999999987899866500126--------79999999862977554312223234565423667423889999999
Q ss_pred HCCC-CCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCC
Q ss_conf 8299-944999298789887999871399967897717876289
Q 005508 523 KASD-DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 523 ~~~~-~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nP 565 (693)
.... .+|||+-|||.+.-|+-++|. .|||.||+|..+-.--
T Consensus 249 ~~~~~~vpiIADGGi~~~Gdi~KAla--~GAd~VMlG~~lAg~~ 290 (388)
T d1eepa_ 249 ACNNTNICIIADGGIRFSGDVVKAIA--AGADSVMIGNLFAGTK 290 (388)
T ss_dssp HHTTSSCEEEEESCCCSHHHHHHHHH--HTCSEEEECHHHHTBT
T ss_pred HHCCCCCEEEECCCCCCCCCEEEEEE--ECCCEEECCHHHHCCC
T ss_conf 86157715785366673773013678--5155034053654136
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.83 E-value=9.2e-08 Score=65.78 Aligned_cols=192 Identities=14% Similarity=0.125 Sum_probs=128.1
Q ss_pred HHHHHCCCCEEE-ECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 999990999899-1651000000288234453302679991999905888999999999976518986999838899743
Q 005508 357 RVCKVLGADVTC-GEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI 435 (693)
Q Consensus 357 rl~~~~Gadl~~-TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~ 435 (693)
+.....|++.++ .-.-.+. .+......+++.-.....+-+|+.|. ...+..+-.++ ..|++-|=||
T Consensus 37 ~~~~~~g~dei~iiDl~~~~---~~~~~~~~~i~~i~~~~~~pi~vgGG-Irs~e~~~~ll--~~Ga~kVii~------- 103 (251)
T d1ka9f_ 37 RAYDEAGADELVFLDISATH---EERAILLDVVARVAERVFIPLTVGGG-VRSLEDARKLL--LSGADKVSVN------- 103 (251)
T ss_dssp HHHHHHTCSCEEEEECCSST---TCHHHHHHHHHHHHTTCCSCEEEESS-CCSHHHHHHHH--HHTCSEEEEC-------
T ss_pred HHHHHCCCCEEEEEECCCCC---CCCHHHHHHHHHHHHCCCCCHHEECC-CCCHHHHHHHH--HCCCCEEEEC-------
T ss_conf 99998699989998444521---23316789999888604851210115-34788888999--7489779989-------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCEEEEEC--------CCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 112774300137938999999984065-4457799845--------8998994-68999999999759878999634456
Q 005508 436 VVNKGAGSCLLTKPMRMKGIIEATSGT-VDKPITIKVR--------TGYFEGK-NRIDSLIADIGTWGASAVTVHGRTRQ 505 (693)
Q Consensus 436 v~~~G~GsaLl~rp~~l~eIikai~~~-v~iPVTVKiR--------~G~~e~~-~~a~~la~~L~e~GvdaItIHgRtr~ 505 (693)
+.++++|+++.++.+..-.. +-.-+.++.+ -||.+.. ....+++..+.+.|+..|.++.-.++
T Consensus 104 -------s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~d 176 (251)
T d1ka9f_ 104 -------SAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRD 176 (251)
T ss_dssp -------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTT
T ss_pred -------CHHHHCHHHHHHHHHHHCCCCCCCCCCHHHCCCCEEEEECCCEECCCCCHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf -------4454387899999876202332211020002210279951451207866999998777559988999854345
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 86678764999999999829994499929878988799987139996789771787628970367874
Q 005508 506 QRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 506 qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
+...| .|++.+.++.+.. ++|+|+.|||.+.+|..+.+. .|++||++|+.++..-.-..++++
T Consensus 177 G~~~G-~d~~l~~~i~~~~--~~pii~~GGv~~~~dl~~l~~--~g~~gviig~al~~g~~~~~~~k~ 239 (251)
T d1ka9f_ 177 GTKEG-YDLRLTRMVAEAV--GVPVIASGGAGRMEHFLEAFQ--AGAEAALAASVFHFGEIPIPKLKR 239 (251)
T ss_dssp TTCSC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHH--TTCSEEEESHHHHTTSSCHHHHHH
T ss_pred CCCCC-CCHHHHHHHHHHC--CEEEEEECCCCCHHHHHHHHH--CCCCEEEEHHHHHCCCCCHHHHHH
T ss_conf 76678-5256777898631--402999658899999999997--899799984797869999999999
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.81 E-value=1.9e-07 Score=63.67 Aligned_cols=189 Identities=13% Similarity=0.095 Sum_probs=125.6
Q ss_pred HHHCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 99909998991651000000288234453302679991999905888999999999976518986999838899743112
Q 005508 359 CKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVN 438 (693)
Q Consensus 359 ~~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~ 438 (693)
....|++.++-=- ......+....+.++..-..+..+-+|+.|. ...+..+..++ ..|++-|=|
T Consensus 39 ~~~~g~dei~ivD--ld~~~~~~~~~~~~i~~i~~~~~~pi~vgGG-Ir~~e~i~~~l--~~Ga~kvii----------- 102 (253)
T d1thfd_ 39 YSEIGIDELVFLD--ITASVEKRKTMLELVEKVAEQIDIPFTVGGG-IHDFETASELI--LRGADKVSI----------- 102 (253)
T ss_dssp HHHTTCCEEEEEE--SSCSSSHHHHHHHHHHHHHTTCCSCEEEESS-CCSHHHHHHHH--HTTCSEEEE-----------
T ss_pred HHHCCCCEEEEEE--ECCCCCCCCCHHHHHHHHHHCCCCCCEEECC-CCCCHHHHHHH--HCCCCEEEE-----------
T ss_conf 9986999899975--2132247634799999998415730024303-00012446678--628989998-----------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCC-CC--CCCEE-------EEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 77430013793899999998406-54--45779-------984589989-946899999999975987899963445686
Q 005508 439 KGAGSCLLTKPMRMKGIIEATSG-TV--DKPIT-------IKVRTGYFE-GKNRIDSLIADIGTWGASAVTVHGRTRQQR 507 (693)
Q Consensus 439 ~G~GsaLl~rp~~l~eIikai~~-~v--~iPVT-------VKiR~G~~e-~~~~a~~la~~L~e~GvdaItIHgRtr~qr 507 (693)
|+.++++|+++.++++..-. .+ .+++. +... +|.. ......+++..+.+.|+..|.++.-.+++.
T Consensus 103 ---gs~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt 178 (253)
T d1thfd_ 103 ---NTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTY-SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 178 (253)
T ss_dssp ---SHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEET-TTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTS
T ss_pred ---CHHHHHCHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEE-ECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf ---74885094999989998098149975531013781366543-11455422288999999755598799998624576
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHH
Q ss_conf 67876499999999982999449992987898879998713999678977178762897036787
Q 005508 508 YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 508 yt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk 572 (693)
..| .|++.+..+++.. ++|||+.|||.+.+|..+.+. .|+++|.+|+.++.+--=..+++
T Consensus 179 ~~G-~d~~ll~~i~~~~--~~pvi~~GGv~s~~di~~l~~--~g~~gvivgsal~~~~~~~~~~k 238 (253)
T d1thfd_ 179 KSG-YDTEMIRFVRPLT--TLPIIASGGAGKMEHFLEAFL--AGADAALAASVFHFREIDVRELK 238 (253)
T ss_dssp CSC-CCHHHHHHHGGGC--CSCEEEESCCCSHHHHHHHHH--TTCSEEEESHHHHTTCSCHHHHH
T ss_pred CCC-CCCCCCCCCCCCC--CCEEEEECCCCCHHHHHHHHH--CCCCEEEECHHHHCCCCCHHHHH
T ss_conf 677-5411111102454--660798448899999999997--89979998148776999999999
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.80 E-value=2.4e-06 Score=56.50 Aligned_cols=244 Identities=15% Similarity=0.133 Sum_probs=132.9
Q ss_pred CCCCCCCCCCCCEEECCCCCCC-------CHHHHHHHHH--CCCCEEEECCCCCCHHCCCCHHHHHHHHCCC-CCCEEEE
Q ss_conf 6444782116938875698979-------3999999999--0999899165100000028823445330267-9991999
Q 005508 330 SREKKLIDFREKLYLAPLTTVG-------NLPFRRVCKV--LGADVTCGEMAMCTNLLQGQASEWALLRRHS-SEDLFGV 399 (693)
Q Consensus 330 p~ekk~l~l~nrl~LAPMt~vt-------dlpFRrl~~~--~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~-~e~pigv 399 (693)
..+.-+..|.-|++++||++.+ +.....-+.. .|..+..+..... ...+ .....+ ...+...
T Consensus 83 st~~lG~~l~~P~~Isp~g~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~------~~~~--~~~~a~~~~~~~~~ 154 (414)
T d1kbia1 83 STDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASC------SPEE--IIEAAPSDKQIQWY 154 (414)
T ss_dssp CEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSS------CHHH--HHHTCCCSSCCEEE
T ss_pred CEEECCCCCCCCEEECHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC------CHHH--HHHHHCCCCCCHHH
T ss_conf 534898417888788745640456822367887764777641365322322346------5688--99872177541011
Q ss_pred EECCCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCCC-------------------------CCCCCCCCCCC--CCHHH
Q ss_conf 905888-999999999976518986999838899743-------------------------11277430013--79389
Q 005508 400 QICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDI-------------------------VVNKGAGSCLL--TKPMR 451 (693)
Q Consensus 400 QL~G~~-pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~-------------------------v~~~G~GsaLl--~rp~~ 451 (693)
|+.... ........+++. .+|++++-++...|..- ....+.+..+- -.+.+
T Consensus 155 q~y~~~~~~~~~~l~~ra~-~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 233 (414)
T d1kbia1 155 QLYVNSDRKITDDLVKNVE-KLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSL 233 (414)
T ss_dssp EECCCSSHHHHHHHHHHHH-HHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTC
T ss_pred CCCCCCCHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 0211245888999999998-718851012334432465178787255665433144420355455327789998506689
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCHHHHHHHHHH-----CC
Q ss_conf 99999984065445779984589989946899999999975987899963445686-6787649999999998-----29
Q 005508 452 MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR-YSKLADWDYIYQCARK-----AS 525 (693)
Q Consensus 452 l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qr-yt~~Adw~~I~~i~~~-----~~ 525 (693)
.-+.|+.++...+.|+.+|--.. ..-+..+.+.|++++.+......|. ......|. +.++... +.
T Consensus 234 ~~~~i~~i~~~~~~~~i~kgi~~--------~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~-l~~i~~~~~~~~v~ 304 (414)
T d1kbia1 234 TWKDIEELKKKTKLPIVIKGVQR--------TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEV-LAETMPILEQRNLK 304 (414)
T ss_dssp CHHHHHHHHHHCSSCEEEEEECS--------HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHH-HHHHHHHHHTTTCB
T ss_pred CHHHHHHHHCCCCCEEEEECCCH--------HHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCC
T ss_conf 99999998615775277520000--------6777788743886245223211111112200000-02466666411148
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9944999298789887999871399967897717876289703678740689999789999999999999986159
Q 005508 526 DDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601 (693)
Q Consensus 526 ~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~~~~d~s~~Erl~il~~~~~~~le~~gs 601 (693)
.++|||+.|||.+.-|+.+++. -|||.|+|||.+|.-...-.+ + ...+.+++++.-++-.+-..|.
T Consensus 305 ~~~~viadGGIR~G~DVaKALA--LGAdaVgigrp~L~~la~~G~--e------gv~~~l~~l~~EL~~~M~l~G~ 370 (414)
T d1kbia1 305 DKLEVFVDGGVRRGTDVLKALC--LGAKGVGLGRPFLYANSCYGR--N------GVEKAIEILRDEIEMSMRLLGV 370 (414)
T ss_dssp TTBEEEEESSCCSHHHHHHHHH--HTCSEEEECHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHH--CCCCEEEECHHHHHHHHHCCH--H------HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8513885388676789999997--589988776899999984469--9------9999999999999999998589
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=98.77 E-value=1.8e-07 Score=63.87 Aligned_cols=199 Identities=13% Similarity=0.010 Sum_probs=118.0
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCC-CCEEEECCCCCCHHCCCCHHHHHH-H-HCCCCCCEEEEEEC
Q ss_conf 77676444782116938875698979399999999909-998991651000000288234453-3-02679991999905
Q 005508 326 LKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWAL-L-RRHSSEDLFGVQIC 402 (693)
Q Consensus 326 ~~~~p~ekk~l~l~nrl~LAPMt~vtdlpFRrl~~~~G-adl~~TEMv~a~~L~~g~~~e~~l-l-~~h~~e~pigvQL~ 402 (693)
++|...+...+.|.-|++-|||-+|++..+-....++| .+++ .-.. ...++.. . ........++..+.
T Consensus 37 ~~~~~~~~~~i~l~iPIIsAnMDTVt~~~mA~~la~~Gglgvi-hR~~--------~ie~~~~~~~~~~~~~~~~~~~~~ 107 (362)
T d1pvna1 37 VKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFI-FGSQ--------SIESQAAMVHAVKNFRYLVGAGIN 107 (362)
T ss_dssp SCEETTSCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEE-CCSS--------CHHHHHHHHHHHHTCCCCCEEEEC
T ss_pred EEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEE-EECC--------CHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7402455666356984784688876899999999988897799-5059--------999999986423320232212110
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCHH
Q ss_conf 8889999999999765189869998388997431127743001379389999999840654--45779984589989946
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKN 480 (693)
Q Consensus 403 G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR~G~~e~~~ 480 (693)
-.+ ...++.. +. .+|+|.|=|... .|+. ..+.++++.+++.. .+||.+.-=.
T Consensus 108 ~~~--~~~~~~~-L~-~ag~d~i~IDvA--------hG~~-------~~v~~~i~~ir~~~~~~~~IiAGNVa------- 161 (362)
T d1pvna1 108 TRD--FRERVPA-LV-EAGADVLCIDSS--------DGFS-------EWQKITIGWIREKYGDKVKVGAGNIV------- 161 (362)
T ss_dssp SSS--HHHHHHH-HH-HHTCSEEEECCS--------CCCB-------HHHHHHHHHHHHHHGGGSCEEEEEEC-------
T ss_pred HHH--HHHHHHH-HH-HCCCEEEEECHH--------CCCH-------HHHHHHHHHHHHHHCCCEEEECCCCC-------
T ss_conf 135--6777777-76-418547753000--------0101-------57889999998865331034212446-------
Q ss_pred HHHHHHHHHHHCCCCEEEEEC------CCCCCCCCCCCCHHHHHHHHHHCC-------CCCEEEEECCCCCHHHHHHHHH
Q ss_conf 899999999975987899963------445686678764999999999829-------9944999298789887999871
Q 005508 481 RIDSLIADIGTWGASAVTVHG------RTRQQRYSKLADWDYIYQCARKAS-------DDLQVLGNGDIYSYLDWNKHKS 547 (693)
Q Consensus 481 ~a~~la~~L~e~GvdaItIHg------Rtr~qryt~~Adw~~I~~i~~~~~-------~~IPVIgNGdI~S~eDa~~~l~ 547 (693)
+.+.++.|.++|+|+|-|-- -||...=.+.+-+..|.+|+.... ..+|||+-|+|.++-|+-++|.
T Consensus 162 -T~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla 240 (362)
T d1pvna1 162 -DGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA 240 (362)
T ss_dssp -SHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH
T ss_pred -CHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE
T ss_conf -7889999997297579844303434343655503771677999999999875332036875353323474662357888
Q ss_pred CCCCCCEEEECHHHH
Q ss_conf 399967897717876
Q 005508 548 DCPELASCMIARGAL 562 (693)
Q Consensus 548 ~~~gaDgVMIGRGaL 562 (693)
.|||+||+|.-+-
T Consensus 241 --~GAd~VM~G~~lA 253 (362)
T d1pvna1 241 --MGADFIMLGRYFA 253 (362)
T ss_dssp --TTCSEEEESHHHH
T ss_pred --EECCCEEEHHHHH
T ss_conf --7134002111540
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.77 E-value=1.3e-07 Score=64.84 Aligned_cols=189 Identities=12% Similarity=0.169 Sum_probs=127.3
Q ss_pred HHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 99990999899165100000028823445330267999199990588899999999997651898699983889974311
Q 005508 358 VCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVV 437 (693)
Q Consensus 358 l~~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~ 437 (693)
.....|++.++--...+.. +......++..-.....+-+|+.|. ...+..+.+++. .|+|-|-||
T Consensus 39 ~~~~~ga~~l~i~DLd~~~---~~~~~~~~i~~i~~~~~~pi~vGGG-Irs~~~~~~ll~--~Ga~kVvi~--------- 103 (239)
T d1vzwa1 39 AWQRSGAEWLHLVDLDAAF---GTGDNRALIAEVAQAMDIKVELSGG-IRDDDTLAAALA--TGCTRVNLG--------- 103 (239)
T ss_dssp HHHHTTCSEEEEEEHHHHH---TSCCCHHHHHHHHHHCSSEEEEESS-CCSHHHHHHHHH--TTCSEEEEC---------
T ss_pred HHHHCCCCEEEEEEECCCC---CCCCHHHHHHHHHHHCCCCEEEECC-CCCCHHHHHHHC--CCCCCCHHH---------
T ss_conf 9998699889997300222---3440089999887640860676300-134301210001--266411356---------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC------CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 27743001379389999999840654457799845------899899468999999999759878999634456866787
Q 005508 438 NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR------TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL 511 (693)
Q Consensus 438 ~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR------~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~ 511 (693)
+.+..+|.++.++++.....+- +.+..+ -||.........++.++.+.|+..|.++.-.+.+...|
T Consensus 104 -----s~~~~~~~~~~~~~~~~g~~~v--v~~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~G- 175 (239)
T d1vzwa1 104 -----TAALETPEWVAKVIAEHGDKIA--VGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQG- 175 (239)
T ss_dssp -----HHHHHCHHHHHHHHHHHGGGEE--EEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------C-
T ss_pred -----HHHHHCCCCCHHHHCCCCCEEE--EEECCCEEEECCCCCEEECCCCCHHHHHHHHCCCCEEEEEEECCCCEECC-
T ss_conf -----7763301100111115771566--53011103424766333013220011344541651899886123543237-
Q ss_pred CCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH--HHCCCCCCEEEECHHHHHCCCCHHHHH
Q ss_conf 6499999999982999449992987898879998--713999678977178762897036787
Q 005508 512 ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH--KSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 512 Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~--l~~~~gaDgVMIGRGaL~nPwiF~eIk 572 (693)
.|++.+..+.+.. ++|||+.|||.|.+|..+. +.. .|++||.+|++++.+--=+.|..
T Consensus 176 ~d~~l~~~i~~~~--~~pvi~sGGv~s~~Di~~l~~l~~-~g~~gvivg~al~~g~i~~~e~~ 235 (239)
T d1vzwa1 176 PNLELLKNVCAAT--DRPVVASGGVSSLDDLRAIAGLVP-AGVEGAIVGKALYAKAFTLEEAL 235 (239)
T ss_dssp CCHHHHHHHHHTC--SSCEEEESCCCSHHHHHHHHTTGG-GTEEEEEECHHHHTTSSCHHHHH
T ss_pred CCCHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHH-CCCCEEEEHHHHHCCCCCHHHHH
T ss_conf 7502110113234--752999779999999999976535-89317657388887998999999
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.66 E-value=1.1e-06 Score=58.73 Aligned_cols=188 Identities=14% Similarity=0.143 Sum_probs=123.7
Q ss_pred HHHCCCCEE-EECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 999099989-9165100000028823445330267999199990588899999999997651898699983889974311
Q 005508 359 CKVLGADVT-CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVV 437 (693)
Q Consensus 359 ~~~~Gadl~-~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~ 437 (693)
....|++.+ +.-.-.+ ..+....+.+++.-.....+-+|+.|. ...+..+-.++ .+|++-|-||
T Consensus 41 ~~~~gadei~ivDl~~~---~~~~~~~~~~i~~i~~~~~~pi~~gGG-Ir~~e~~~~ll--~~G~~kVii~--------- 105 (252)
T d1h5ya_ 41 YEEEGADEIAILDITAA---PEGRATFIDSVKRVAEAVSIPVLVGGG-VRSLEDATTLF--RAGADKVSVN--------- 105 (252)
T ss_dssp HHHTTCSCEEEEECCCC---TTTHHHHHHHHHHHHHHCSSCEEEESS-CCSHHHHHHHH--HHTCSEEEES---------
T ss_pred HHHCCCCEEEEEECCCC---CCCCCCHHHHHHHHHHHCCCCCEEECC-CCHHHHHHHHH--HCCCCEEEEC---------
T ss_conf 99879998999713343---224540899999887504886313045-21145556675--2488079834---------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCC-CCCCCEEEEEC--------CCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 277430013793899999998406-54457799845--------8998994-6899999999975987899963445686
Q 005508 438 NKGAGSCLLTKPMRMKGIIEATSG-TVDKPITIKVR--------TGYFEGK-NRIDSLIADIGTWGASAVTVHGRTRQQR 507 (693)
Q Consensus 438 ~~G~GsaLl~rp~~l~eIikai~~-~v~iPVTVKiR--------~G~~e~~-~~a~~la~~L~e~GvdaItIHgRtr~qr 507 (693)
+.+..+|+++.++.+..-. .+-+.+.+|.. -||.+.. -...++++.+.+.|+..|.++.-.+++.
T Consensus 106 -----s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~ 180 (252)
T d1h5ya_ 106 -----TAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT 180 (252)
T ss_dssp -----HHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTT
T ss_pred -----CCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEECCEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf -----544579616789998628785899999997699379999699686898899999999856999899972545676
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHH
Q ss_conf 6787649999999998299944999298789887999871399967897717876289703678
Q 005508 508 YSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 571 (693)
Q Consensus 508 yt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eI 571 (693)
..| .|++.+.++++.. ++|||+.|||.+.+|..++.. .|++||.+|+.++.+--=..++
T Consensus 181 ~~G-~d~~~~~~i~~~~--~~pii~~GGv~~~~di~~l~~--~g~~gv~~gs~l~~~~~~~~~l 239 (252)
T d1h5ya_ 181 GLG-YDVELIRRVADSV--RIPVIASGGAGRVEHFYEAAA--AGADAVLAASLFHFRVLSIAQV 239 (252)
T ss_dssp CSC-CCHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHH--TTCSEEEESHHHHTTSSCHHHH
T ss_pred CCC-CCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHH--CCCCEEEEHHHHHCCCCCHHHH
T ss_conf 687-6999999999863--987797438899999999987--8998999805878599999999
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.48 E-value=2.5e-06 Score=56.27 Aligned_cols=194 Identities=16% Similarity=0.102 Sum_probs=113.6
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHCC-CCEEEECCCCCCHHCCCCHHHHHHHHCC--------CCCCEEEEEECCC
Q ss_conf 782116938875698979399999999909-9989916510000002882344533026--------7999199990588
Q 005508 334 KLIDFREKLYLAPLTTVGNLPFRRVCKVLG-ADVTCGEMAMCTNLLQGQASEWALLRRH--------SSEDLFGVQICGA 404 (693)
Q Consensus 334 k~l~l~nrl~LAPMt~vtdlpFRrl~~~~G-adl~~TEMv~a~~L~~g~~~e~~ll~~h--------~~e~pigvQL~G~ 404 (693)
+++.|.-|++-|||-+|++..+-....++| .+++.-.+ ..... ..+...++.. .....+.+-+ +-
T Consensus 40 ~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~-~~e~~----~~~v~~v~~~e~~~~~~~d~~~~~~v~~-~~ 113 (368)
T d2cu0a1 40 PNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNM-GIEEQ----VEQVKRVKRAEKYKNAVRDENGELLVAA-AV 113 (368)
T ss_dssp TTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSS-CHHHH----HHHHHHHHTCCCCTTCCBCTTSCBCCEE-EE
T ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCC-CHHHH----HHHHHHHHHHHHCCCCCCCCCCCEEEEE-CC
T ss_conf 883148898957987768889999999789965750648-98999----9988743344432410136676379993-25
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 89999999999765189869998388997431127743001379389999999840654457799845899899468999
Q 005508 405 YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDS 484 (693)
Q Consensus 405 ~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~ 484 (693)
.++.+.++..++ .+|+|.|-|...... ...+.+.++.++...++||.+.--. +.+.
T Consensus 114 ~~~~~~r~~~l~--~aGvd~ivID~A~Gh---------------~~~~i~~lK~ir~~~~~~vIaGNVa----T~e~--- 169 (368)
T d2cu0a1 114 SPFDIKRAIELD--KAGVDVIVVDTAHAH---------------NLKAIKSMKEMRQKVDADFIVGNIA----NPKA--- 169 (368)
T ss_dssp CTTCHHHHHHHH--HTTCSEEEEECSCCC---------------CHHHHHHHHHHHHTCCSEEEEEEEC----CHHH---
T ss_pred CHHHHHHHHHHH--HCCCCEEEECCCCCC---------------HHHHHHHHHHHHHHCCCCEEECCCC----CHHH---
T ss_conf 727789999999--839987984375420---------------1245666655412104313221136----7999---
Q ss_pred HHHHHHHCCCCEEEEEC------CCCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 99999975987899963------445686678764999999999829-99449992987898879998713999678977
Q 005508 485 LIADIGTWGASAVTVHG------RTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 485 la~~L~e~GvdaItIHg------Rtr~qryt~~Adw~~I~~i~~~~~-~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMI 557 (693)
+ +..+|+|+|-|-- .||.+.-.+.+-+..|.+|++... ..+|||+-|+|.+.-|+-++|. .|||.||+
T Consensus 170 -~--~~l~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla--~GAd~VMl 244 (368)
T d2cu0a1 170 -V--DDLTFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIA--AGADAVML 244 (368)
T ss_dssp -H--TTCTTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHH--TTCSEEEE
T ss_pred -H--HHHHCCCCEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEEE--ECCCEEEC
T ss_conf -9--765227621444567555533211242343478999999987524970684588786772113566--41323530
Q ss_pred CHHHH
Q ss_conf 17876
Q 005508 558 ARGAL 562 (693)
Q Consensus 558 GRGaL 562 (693)
|.-+=
T Consensus 245 G~~lA 249 (368)
T d2cu0a1 245 GNLLA 249 (368)
T ss_dssp STTTT
T ss_pred CCHHC
T ss_conf 53111
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=98.45 E-value=4.3e-06 Score=54.79 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=107.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC-----
Q ss_conf 999058889999999999765189869998388997431127743001379389999999840654457799845-----
Q 005508 398 GVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR----- 472 (693)
Q Consensus 398 gvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR----- 472 (693)
-+|+.|.- .....+-.++ ..|+|-|-+| +++.++|.++..+.+ ... .+.+++-++
T Consensus 75 pl~~gGGI-~s~~~~~~~~--~~Ga~kVvi~--------------s~~~~~~~~~~~~~~-~~~--~~~v~iD~~~~~~~ 134 (241)
T d1qo2a_ 75 HIQIGGGI-RSLDYAEKLR--KLGYRRQIVS--------------SKVLEDPSFLKSLRE-IDV--EPVFSLDTRGGRVA 134 (241)
T ss_dssp GEEEESSC-CSHHHHHHHH--HTTCCEEEEC--------------HHHHHCTTHHHHHHT-TTC--EEEEEEEEETTEEC
T ss_pred CHHHHHHH-HHHHHHHHCC--CCCCCEEECC--------------CCCCCCCHHHHHHCC-CCC--CEEEECCCCCCCCC
T ss_conf 43532321-0000011112--3333268427--------------523357122122203-565--21440222124322
Q ss_pred -CCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH---
Q ss_conf -8998994-68999999999759878999634456866787649999999998299944999298789887999871---
Q 005508 473 -TGYFEGK-NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS--- 547 (693)
Q Consensus 473 -~G~~e~~-~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~--- 547 (693)
-||.+.. ....++++++.+.|+..|.++.-.+.+...| .|++.+..+.+.. ++|||+.|||.+.+|..++..
T Consensus 135 ~~g~~~~~~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G-~d~~l~~~i~~~~--~~pvi~~GGv~s~~di~~l~~ig~ 211 (241)
T d1qo2a_ 135 FKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQE-HDFSLTKKIAIEA--EVKVLAAGGISSENSLKTAQKVHT 211 (241)
T ss_dssp CTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCC-CCHHHHHHHHHHH--TCEEEEESSCCSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEHHHHHHHHHCCCCCEEEEEEHHHHHHCCC-CCHHHHHHHHCCC--CCEEEEECCCCCHHHHHHHHHCCC
T ss_conf 3676322033114778875412554388743134443034-2113445553258--964999889999999999997365
Q ss_pred -CCCCCCEEEECHHHHHCCCCHHHHH
Q ss_conf -3999678977178762897036787
Q 005508 548 -DCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 548 -~~~gaDgVMIGRGaL~nPwiF~eIk 572 (693)
...+++||.+|++++.+---+.+++
T Consensus 212 ~~~~~~~gvivG~al~~g~l~~~~~k 237 (241)
T d1qo2a_ 212 ETNGLLKGVIVGRAFLEGILTVEVMK 237 (241)
T ss_dssp HTTTSEEEEEECHHHHTTSSCHHHHH
T ss_pred CCCCCEEEEEEHHHHHCCCCCHHHHH
T ss_conf 54587816778779888998999999
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=98.20 E-value=3.1e-05 Score=49.08 Aligned_cols=202 Identities=12% Similarity=0.103 Sum_probs=118.9
Q ss_pred CCCCEEECCCCC--CCCHHHHHHHH---HCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECC----CCHHH
Q ss_conf 169388756989--79399999999---9099989916510000002882344533026799919999058----88999
Q 005508 338 FREKLYLAPLTT--VGNLPFRRVCK---VLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG----AYPDT 408 (693)
Q Consensus 338 l~nrl~LAPMt~--vtdlpFRrl~~---~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G----~~pe~ 408 (693)
+-.|+..+.|-= ++.-+.+.|.. ..|+-...+|-.......+.... ...-.-.+.|++. -+++.
T Consensus 427 I~k~f~isaMSfGALS~~A~~aLa~ga~~~g~~~ntGEGG~~~~~~~~~~~-------~~~~~~~i~q~asgrfG~~~~~ 499 (771)
T d1ea0a2 427 IRKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKN-------GDNWNSAIKQVASGRFGVTAEY 499 (771)
T ss_dssp HHTTEEEEECCBTTBCHHHHHHHHHHHHHTTCEEECCTTCCCGGGSSBCTT-------SCBCCCSEEEECSSCTTCCHHH
T ss_pred HHEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHCCCCCC-------CCCCCCCCCEECCCCCCCCHHH
T ss_conf 100302365345555799999999999961976563799988555012689-------8643321004557767769788
Q ss_pred HHHHHHHHHHHCCCCEEEECCCC----------CCCCC-------CCCCCCCCC--------CCCHHHHHHHHHHHCCCC
Q ss_conf 99999997651898699983889----------97431-------127743001--------379389999999840654
Q 005508 409 LARTVELIDQQCTVDFIDINMGC----------PIDIV-------VNKGAGSCL--------LTKPMRMKGIIEATSGTV 463 (693)
Q Consensus 409 ~a~AAe~l~~~aG~D~IDLN~GC----------P~~~v-------~~~G~GsaL--------l~rp~~l~eIikai~~~v 463 (693)
+ ..+++|+|-+|= |-.+| +.-.-|-.+ ...++-+.+.|..++.+.
T Consensus 500 -------l---~~~~~ieIK~~QGAKpG~GG~Lpg~KVt~~IA~~R~~~~G~~~iSP~~h~di~siedL~~~I~~Lr~~~ 569 (771)
T d1ea0a2 500 -------L---NQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQIN 569 (771)
T ss_dssp -------H---TSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHC
T ss_pred -------H---CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf -------4---333116776403455565430340227899997638999988557877888999999999999999627
Q ss_pred -CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC--------CCCCCCHHHHHHHHHH-----CCCCCE
Q ss_conf -45779984589989946899999999975987899963445686--------6787649999999998-----299944
Q 005508 464 -DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQR--------YSKLADWDYIYQCARK-----ASDDLQ 529 (693)
Q Consensus 464 -~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qr--------yt~~Adw~~I~~i~~~-----~~~~IP 529 (693)
+.||.||+-.+. ....++..+.++|+|.|+|.|...... +.|.+--..+.++.+. ....|.
T Consensus 570 ~~~pv~vKl~~~~-----~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V~ 644 (771)
T d1ea0a2 570 PDAKVTVKLVSRS-----GIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVR 644 (771)
T ss_dssp TTCEEEEEEECCT-----THHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSE
T ss_pred CCCCEEEEECCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 9998799987767-----48999999873589889971688766666677760687379999999999999769987539
Q ss_pred EEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf 9992987898879998713999678977178762
Q 005508 530 VLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 530 VIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~ 563 (693)
||+.|++.++.|+..++. -|||.|.+||++|.
T Consensus 645 l~a~Ggl~t~~Dv~ka~a--LGAD~v~~gt~~m~ 676 (771)
T d1ea0a2 645 LRTDGGLKTGRDIVIAAM--LGAEEFGIGTASLI 676 (771)
T ss_dssp EEEESSCCSHHHHHHHHH--TTCSEEECCHHHHH
T ss_pred EEEECCCCCHHHHHHHHH--HCCCCHHHHHHHHH
T ss_conf 997089888999999998--37891677699999
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.17 E-value=0.00018 Score=44.06 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=106.7
Q ss_pred CCEEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEC--CCCCCC--CCCCCCCCCCCC--CCHHHHHHHHHHHCCCCCC
Q ss_conf 99199990588--899999999997651898699983--889974--311277430013--7938999999984065445
Q 005508 394 EDLFGVQICGA--YPDTLARTVELIDQQCTVDFIDIN--MGCPID--IVVNKGAGSCLL--TKPMRMKGIIEATSGTVDK 465 (693)
Q Consensus 394 e~pigvQL~G~--~pe~~a~AAe~l~~~aG~D~IDLN--~GCP~~--~v~~~G~GsaLl--~rp~~l~eIikai~~~v~i 465 (693)
..-|+.=|.++ +.+.+.++++.+. .+|+|.|||- +.-|+- -+.+.-.--+|. -..+.+.++++.++...++
T Consensus 16 ~~~li~y~~aG~P~~~~~~~~l~~l~-~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~ 94 (261)
T d1rd5a_ 16 KTAFIPYITAGDPDLATTAEALRLLD-GCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSC 94 (261)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHH-HTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSS
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 97699998586898789999999999-75999999778888867678603552132324684225666665302545567
Q ss_pred CEEEEE------CCC--------C------CCCHHHHHHHHHHHHHCCCCEEEEECC-CCCCC------------C----
Q ss_conf 779984------589--------9------899468999999999759878999634-45686------------6----
Q 005508 466 PITIKV------RTG--------Y------FEGKNRIDSLIADIGTWGASAVTVHGR-TRQQR------------Y---- 508 (693)
Q Consensus 466 PVTVKi------R~G--------~------~e~~~~a~~la~~L~e~GvdaItIHgR-tr~qr------------y---- 508 (693)
|+.+=. +.| + +-..++...+...+.+.|++.|-+-.- |...| |
T Consensus 95 p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~ 174 (261)
T d1rd5a_ 95 PVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSV 174 (261)
T ss_dssp CEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECS
T ss_pred CEEEEEEECCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHC
T ss_conf 50344212451267788887559205420576077777888887434653698745677236788888509645321111
Q ss_pred ---CC------CCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHCCCCCC
Q ss_conf ---78------764999999999829994499929878988799987139996789771787628970367874068999
Q 005508 509 ---SK------LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDI 579 (693)
Q Consensus 509 ---t~------~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~~~~d~ 579 (693)
|| ...-+++.++++.. ++||+.--||.+++++.++.. .|+|||.||..++ +.+.+. .
T Consensus 175 ~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pi~vGFGI~~~e~v~~~~~--~gaDGvIVGSaiv------~~i~~~----~ 240 (261)
T d1rd5a_ 175 NGVTGPRANVNPRVESLIQEVKKVT--NKPVAVGFGISKPEHVKQIAQ--WGADGVIIGSAMV------RQLGEA----A 240 (261)
T ss_dssp SCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHH--TTCSEEEECHHHH------HHHHSS----S
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHH--CCCCEEEECHHHH------HHHHHC----C
T ss_conf 3765322221157999998762036--787699817799999999986--5999999888999------999975----7
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 978999999999999998
Q 005508 580 TSGERLNIMKDFARFGLE 597 (693)
Q Consensus 580 s~~Erl~il~~~~~~~le 597 (693)
+..+-++.+.+|++-.-+
T Consensus 241 ~~~~~~~~~~~~~~~lk~ 258 (261)
T d1rd5a_ 241 SPKQGLRRLEEYARGMKN 258 (261)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 878999999999999998
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.12 E-value=2.2e-05 Score=50.14 Aligned_cols=69 Identities=12% Similarity=0.007 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 49999999998299944999298789887999871399967897717876289703678740689999789999999999
Q 005508 513 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFA 592 (693)
Q Consensus 513 dw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~~~~d~s~~Erl~il~~~~ 592 (693)
--+++.++++.. ++||+.--||.+++++.+.+. .++|||.||.+++. .|.+.. .+..+.++-+..|+
T Consensus 193 ~~~~i~~ik~~t--~~Pv~vGFGI~~~e~v~~~~~--~~ADGvIVGSAivk------~i~~~~---~~~~~~~~~i~~~v 259 (267)
T d1qopa_ 193 LHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVR--AGAAGAISGSAIVK------IIEKNL---ASPKQMLAELRSFV 259 (267)
T ss_dssp CHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHH--TTCSEEEECHHHHH------HHHHTT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCCCEEECCCCCHHHHHHHHH--CCCCEEEECHHHHH------HHHHCC---CCHHHHHHHHHHHH
T ss_conf 789998876523--687312016599999999986--48999998889999------998624---17899999999999
Q ss_pred HH
Q ss_conf 99
Q 005508 593 RF 594 (693)
Q Consensus 593 ~~ 594 (693)
+-
T Consensus 260 ~~ 261 (267)
T d1qopa_ 260 SA 261 (267)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=97.99 E-value=0.00046 Score=41.39 Aligned_cols=198 Identities=12% Similarity=0.024 Sum_probs=124.8
Q ss_pred EEECCCCCCCCHHHHHHHH---HCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEEC---C-CCHHHHHHHHH
Q ss_conf 8875698979399999999---909998991651000000288234453302679991999905---8-88999999999
Q 005508 342 LYLAPLTTVGNLPFRRVCK---VLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQIC---G-AYPDTLARTVE 414 (693)
Q Consensus 342 l~LAPMt~vtdlpFRrl~~---~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~---G-~~pe~~a~AAe 414 (693)
-.|.|.. |..-.+++|. ++|+..+|..-..+. +.. + ++ ++.++..=+. | ...+.-..-++
T Consensus 11 TlL~~~~--t~~~i~~lc~~A~~~~~~aVcV~P~~v~-~a~----~--~l----~~vkv~tVigFP~G~~~~~~K~~E~~ 77 (225)
T d1mzha_ 11 AALKPHL--SEKEIEEFVLKSEELGIYAVCVNPYHVK-LAS----S--IA----KKVKVCCVIGFPLGLNKTSVKVKEAV 77 (225)
T ss_dssp EECCTTC--CHHHHHHHHHHHHHTTCSEEEECGGGHH-HHH----H--HC----SSSEEEEEESTTTCCSCHHHHHHHHH
T ss_pred CCCCCCC--CHHHHHHHHHHHHHHCCCEEEECHHHHH-HHH----H--HC----CCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 0689989--9999999999999859968998889999-888----6--32----57744788435877771899999999
Q ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9765189869998388997431127743001379389999999840654-457799845899899468999999999759
Q 005508 415 LIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWG 493 (693)
Q Consensus 415 ~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G~~e~~~~a~~la~~L~e~G 493 (693)
.+. ..|+|.||+=+ .+|...-.+.+.+.+-+++++... +.++-|-+-++.- +.++....++.+.++|
T Consensus 78 ~Ai-~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L-~~~ei~~a~~~a~~aG 145 (225)
T d1mzha_ 78 EAV-RDGAQELDIVW----------NLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYL-NEEEIKKAVEICIEAG 145 (225)
T ss_dssp HHH-HTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGC-CHHHHHHHHHHHHHHT
T ss_pred HHH-HCCCCEEEEEE----------CHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCC-CHHHHHHHHHHHHHCC
T ss_conf 999-83898588740----------46656256679999999999986568604211321347-8799999999999804
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 87899963445686678764999999999829994499929878988799987139996789771787628970367874
Q 005508 494 ASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 494 vdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
+|+|--... ...+.+..+-|+.+++.++..+.|=+.|||.|.+++.++++ .|++-+....+. .|+++.++
T Consensus 146 adfiKTSTG----~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~--~Ga~RiGtSs~~----~i~~e~~~ 215 (225)
T d1mzha_ 146 ADFIKTSTG----FAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIE--AGADRIGTSSGI----SIAEEFLK 215 (225)
T ss_dssp CSEEECCCS----CSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH--TTCSEEEESCHH----HHHHHHHH
T ss_pred CCEEEECCC----CCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH--HCHHHEECCCHH----HHHHHHHH
T ss_conf 351764688----78898889999999998587844877179899999999998--452642147589----99999996
Q ss_pred C
Q ss_conf 0
Q 005508 574 Q 574 (693)
Q Consensus 574 ~ 574 (693)
+
T Consensus 216 ~ 216 (225)
T d1mzha_ 216 R 216 (225)
T ss_dssp H
T ss_pred C
T ss_conf 2
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.99 E-value=0.0002 Score=43.72 Aligned_cols=144 Identities=12% Similarity=0.067 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEECC
Q ss_conf 88999999999976518986999838899743--------1127743001379389999999840654--4577998458
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDI--------VVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT 473 (693)
Q Consensus 404 ~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~--------v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR~ 473 (693)
.+|+.+++.|+.+. ..||+.|-++.+.+... ..+...|.-..++++.-.+.|+++++++ ++.+.|..-.
T Consensus 25 ~tPe~~~~~a~~~~-~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~vG~~~~l~vDan~ 103 (278)
T d2gl5a1 25 VTPEEYAEAARAAL-DDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHS 103 (278)
T ss_dssp CSHHHHHHHHHHHH-HTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 99999999999999-75999899816667766542112454544344432778999999999999870665412101244
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 99899468999999999759878999634456866787649999999998299944999298789887999871399967
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 474 G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaD 553 (693)
+| +..++.++++.|++.++.++ ++-. .+-+++-.+++++.. ++||.+.-.+++..++.++++. ..+|
T Consensus 104 ~~--~~~~Ai~~~~~L~~~~l~wi-------EePi-~~~d~~~~~~L~~~~--~ipIa~gE~~~~~~~~~~~i~~-~a~d 170 (278)
T d2gl5a1 104 LL--GTNSAIQFAKAIEKYRIFLY-------EEPI-HPLNSDNMQKVSRST--TIPIATGERSYTRWGYRELLEK-QSIA 170 (278)
T ss_dssp CS--CHHHHHHHHHHHGGGCEEEE-------ECSS-CSSCHHHHHHHHHHC--SSCEEECTTCCTTHHHHHHHHT-TCCS
T ss_pred CC--CCHHHHHHHHHHCCCCCCEE-------CCCC-CCCCHHHHHHHCCCC--CCCEECCCCCCCHHHHHHHHCC-CCCE
T ss_conf 65--51156778877513432100-------3663-223535554301032--4533225554785787654203-5412
Q ss_pred EEEECHHH
Q ss_conf 89771787
Q 005508 554 SCMIARGA 561 (693)
Q Consensus 554 gVMIGRGa 561 (693)
.+++--+-
T Consensus 171 i~~~d~~~ 178 (278)
T d2gl5a1 171 VAQPDLCL 178 (278)
T ss_dssp EECCCTTT
T ss_pred EEEECCCC
T ss_conf 67531210
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=97.92 E-value=0.00012 Score=45.19 Aligned_cols=212 Identities=14% Similarity=0.145 Sum_probs=117.4
Q ss_pred CCCCEEECCCCC--CCCHHHHHHHH---HCCCCEEEECCCCCCHHCCC--------CHHHHH---HHHCCCCCCEEEEEE
Q ss_conf 169388756989--79399999999---90999899165100000028--------823445---330267999199990
Q 005508 338 FREKLYLAPLTT--VGNLPFRRVCK---VLGADVTCGEMAMCTNLLQG--------QASEWA---LLRRHSSEDLFGVQI 401 (693)
Q Consensus 338 l~nrl~LAPMt~--vtdlpFRrl~~---~~Gadl~~TEMv~a~~L~~g--------~~~e~~---ll~~h~~e~pigvQL 401 (693)
+--|++.+-|-= ++.-+.+.|.. +.|+-..-+|-.....-.+. ...... -++....-.-.+.|+
T Consensus 436 I~k~f~~~aMS~GslS~~a~~ala~aa~~~G~~~ntGEGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~i~q~ 515 (809)
T d1ofda2 436 IVKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQI 515 (809)
T ss_dssp HHTTEECCCBCTTTSCHHHHHHHHHHHHHHTCBCEECTTCCCGGGGSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEEEE
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 21220245555445568999999999997186533788888845653267643325765432234655788773456752
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCC----------CCCCC-------CCCCCCCCCC--------CCHHHHHHHH
Q ss_conf 588899999999997651898699983889----------97431-------1277430013--------7938999999
Q 005508 402 CGAYPDTLARTVELIDQQCTVDFIDINMGC----------PIDIV-------VNKGAGSCLL--------TKPMRMKGII 456 (693)
Q Consensus 402 ~G~~pe~~a~AAe~l~~~aG~D~IDLN~GC----------P~~~v-------~~~G~GsaLl--------~rp~~l~eIi 456 (693)
+... |.-.++.+. . ++.|+|-+|= |-.+| +.---|..|. ..++-+.+.|
T Consensus 516 asgr---fGv~~~~l~-~--~~~ieIK~~QGAKPG~GG~Lpg~KVt~~IA~~R~~~~G~~liSP~~h~diysiedL~q~I 589 (809)
T d1ofda2 516 ASGR---FGVTPEYLM-S--GKQLEIKMAQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLI 589 (809)
T ss_dssp CTTC---TTCCHHHHH-H--CSEEEEECCCTTSTTSCCEECGGGCCHHHHHHHTSCTTCCEECCSSCTTCSSHHHHHHHH
T ss_pred HHCC---CCCCHHHHC-C--CCEEEEEEECCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 2002---587755522-5--432789872145566552134310478888111789998878988788888999999999
Q ss_pred HHHCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC----------HHH-HHHHHHH-
Q ss_conf 9840654-45779984589989946899999999975987899963445686678764----------999-9999998-
Q 005508 457 EATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLAD----------WDY-IYQCARK- 523 (693)
Q Consensus 457 kai~~~v-~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Ad----------w~~-I~~i~~~- 523 (693)
..++... ..||.||+-... ....++..+..+|+|.|+|.|.... ||.+- |.+ +.++.+.
T Consensus 590 ~~Lr~~~~~~pv~vKl~~~~-----g~~~ia~~vaka~aD~I~IdG~eGG---TGAap~~~~~~~GlP~~~gl~~a~~~L 661 (809)
T d1ofda2 590 YDLHQINPEAQVSVKLVAEI-----GIGTIAAGVAKANADIIQISGHDGG---TGASPLSSIKHAGSPWELGVTEVHRVL 661 (809)
T ss_dssp HHHHHHCTTSEEEEEEECST-----THHHHHHHHHHTTCSEEEEECTTCC---CSSEEHHHHHHBCCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEEEEEEC-----CHHHHHHHHHHCCCCEEEEECCCCC---CCCCCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99997179996599995543-----7089998776347988998378876---654667788608854899999999999
Q ss_pred ----CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCC
Q ss_conf ----299944999298789887999871399967897717876289
Q 005508 524 ----ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 524 ----~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nP 565 (693)
....|.+|+.|++.|+.|+..++. -|||.|.+||++|.--
T Consensus 662 ~~~glR~~V~Lia~Ggl~t~~Dv~ka~a--LGAD~v~~gt~~l~al 705 (809)
T d1ofda2 662 MENQLRDRVLLRADGGLKTGWDVVMAAL--MGAEEYGFGSIAMIAE 705 (809)
T ss_dssp HHTTCGGGCEEEEESSCCSHHHHHHHHH--TTCSEEECSHHHHHHT
T ss_pred HHCCCCCCEEEEEECCCCCHHHHHHHHH--HCCCCHHHHHHHHHHH
T ss_conf 9769987449998189888999999998--2889266748999998
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=97.87 E-value=0.00076 Score=39.94 Aligned_cols=190 Identities=15% Similarity=0.068 Sum_probs=119.4
Q ss_pred EECCCCCCCCHHHHHHHH---HCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEEC----CCCHHHHHHHHHH
Q ss_conf 875698979399999999---909998991651000000288234453302679991999905----8889999999999
Q 005508 343 YLAPLTTVGNLPFRRVCK---VLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQIC----GAYPDTLARTVEL 415 (693)
Q Consensus 343 ~LAPMt~vtdlpFRrl~~---~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~----G~~pe~~a~AAe~ 415 (693)
.|.|-+ |.--.+.+|. ++|+.-+|..-..+. +. . .++. .+...+..=+. ....+.-..-++.
T Consensus 10 lL~~~~--T~~~i~~lc~~A~~~~~~aVcV~P~~v~-~a----~--~~l~--~s~v~v~~VigFP~G~~~~~~k~~e~~~ 78 (211)
T d1ub3a_ 10 LLKPTA--TLEEVAKAAEEALEYGFYGLCIPPSYVA-WV----R--ARYP--HAPFRLVTVVGFPLGYQEKEVKALEAAL 78 (211)
T ss_dssp CCCTTC--CHHHHHHHHHHHHHHTCSEEECCGGGHH-HH----H--HHCT--TCSSEEEEEESTTTCCSCHHHHHHHHHH
T ss_pred CCCCCC--CHHHHHHHHHHHHHHCCEEEEECHHHHH-HH----H--HHCC--CCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 799999--9999999999998749829998889999-99----9--9805--8997237898236665738899999999
Q ss_pred HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 765189869998388997431127743001379389999999840654-4577998458998994689999999997598
Q 005508 416 IDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWGA 494 (693)
Q Consensus 416 l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G~~e~~~~a~~la~~L~e~Gv 494 (693)
+. ..|+|.||+=+ .+|..+-.+.+.+.+-++.++++. +.++-|-+-++.- +.++....++...++|+
T Consensus 79 ai-~~GA~EiD~V~----------n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L-~~~ei~~a~~~a~~aGa 146 (211)
T d1ub3a_ 79 AC-ARGADEVDMVL----------HLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYF-SPEEIARLAEAAIRGGA 146 (211)
T ss_dssp HH-HTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGS-CHHHHHHHHHHHHHHTC
T ss_pred HH-HCCCCEEEEEE----------CCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHHHHHHHCC
T ss_conf 99-80898699863----------35333368888999999999986467726888502538-99999999999998163
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 7899963445686678764999999999829994499929878988799987139996789771787
Q 005508 495 SAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 495 daItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGa 561 (693)
++|--... ...+.+..+-+..+++.++..+.|=+.|||.|++++.++++ .|++-+-..+|.
T Consensus 147 dfiKTSTG----~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~--aGa~riGtSs~~ 207 (211)
T d1ub3a_ 147 DFLKTSTG----FGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLK--AGASRLGTSSGV 207 (211)
T ss_dssp SEEECCCS----SSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH--TTCSEEEETTHH
T ss_pred CEEEECCC----CCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH--HHHHHHCCCCHH
T ss_conf 43883688----78899878999999998677854977079799999999999--851671138377
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.81 E-value=0.00028 Score=42.84 Aligned_cols=45 Identities=7% Similarity=-0.004 Sum_probs=39.4
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHH
Q ss_conf 9999999998299944999298789887999871399967897717876
Q 005508 514 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL 562 (693)
Q Consensus 514 w~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL 562 (693)
-+++.++++.. ++||+.--||.+++++.+++. .++|||.||.+.+
T Consensus 180 ~~~v~~vk~~t--~~Pv~vGFGI~~~e~v~~~~~--~~ADGvIVGSaiv 224 (248)
T d1geqa_ 180 YDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLK--EGANGVVVGSALV 224 (248)
T ss_dssp HHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHH--TTCSEEEECHHHH
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHH--CCCCEEEECHHHH
T ss_conf 78888876503--641466136499999999986--5999999888999
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=97.74 E-value=0.0012 Score=38.67 Aligned_cols=205 Identities=13% Similarity=0.051 Sum_probs=129.2
Q ss_pred CCCCCCCCCCEEECCCCCC-CCHHHHHHHHHCCCCEEEECCCCCCHHCC-CCHHHHHHHHCCCCCCEEEEEECC-CCHHH
Q ss_conf 4478211693887569897-93999999999099989916510000002-882344533026799919999058-88999
Q 005508 332 EKKLIDFREKLYLAPLTTV-GNLPFRRVCKVLGADVTCGEMAMCTNLLQ-GQASEWALLRRHSSEDLFGVQICG-AYPDT 408 (693)
Q Consensus 332 ekk~l~l~nrl~LAPMt~v-tdlpFRrl~~~~Gadl~~TEMv~a~~L~~-g~~~e~~ll~~h~~e~pigvQL~G-~~pe~ 408 (693)
++.+..|..|+++-- ..+ +..-++......|++++---+-. ..+.+ +...-|.+++ +..-.+-..-+| .+.++
T Consensus 4 ~I~g~~f~SRLilGT-gkY~s~~~~~~ai~aSgaeiVTVAlRR-~~~~~~~~~~~l~~i~--~~~~~lLPNTAGc~tA~E 79 (251)
T d1xm3a_ 4 TIGGKSFQSRLLLGT-GKYPSFDIQKEAVAVSESDILTFAVRR-MNIFEASQPNFLEQLD--LSKYTLLPNTAGASTAEE 79 (251)
T ss_dssp EETTEEESCCEEEEC-SCSSCHHHHHHHHHHHTCSEEEEETTS-STTC-------CTTCC--GGGSEEEEECTTCSSHHH
T ss_pred EECCEEEECCEEEEC-CCCCCHHHHHHHHHHHCCCEEEEEEEE-ECCCCCCCCCHHHHCC--CCCEEECCCHHHHHHHHH
T ss_conf 999999885358874-899999999999998699879999863-1376788864144315--554597254298750999
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 99999997651898699983889974311277430013793899999998406544577998458998994689999999
Q 005508 409 LARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIAD 488 (693)
Q Consensus 409 ~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~ 488 (693)
.++.|+++.+..+-++|-|-. ..+. -.|+-++-.+.+-.+.+.+. ++-|..-+.- + ..++++
T Consensus 80 Avr~A~lARE~~~t~~IKLEV-------i~D~--~~L~PD~~etl~Aae~Lv~e-GF~VlpY~~~----D----~v~ak~ 141 (251)
T d1xm3a_ 80 AVRIARLAKASGLCDMIKVEV-------IGCS--RSLLPDPVETLKASEQLLEE-GFIVLPYTSD----D----VVLARK 141 (251)
T ss_dssp HHHHHHHHHHTTCCSSEEECC-------BCCT--TTCCBCHHHHHHHHHHHHHT-TCCEEEEECS----C----HHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEE-------ECCC--CCCCCCHHHHHHHHHHHHHC-CCEEEEECCC----C----HHHHHH
T ss_conf 999999999815896689997-------3488--77688877999999999868-9679996178----9----899999
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf 997598789996344568667876499999999982999449992987898879998713999678977178762
Q 005508 489 IGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 489 L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~ 563 (693)
|++.|+.+|---|-. -+.-.|..+...++.+.+.. ++|||.-+||-++.|+-++++ -|+|+|++..+.-.
T Consensus 142 Le~~Gc~avMPlgsP-IGSg~Gl~n~~~l~~i~~~~--~vPvIvDAGIG~pSdAa~AME--lG~daVLvNTAIA~ 211 (251)
T d1xm3a_ 142 LEELGVHAIMPGASP-IGSGQGILNPLNLSFIIEQA--KVPVIVDAGIGSPKDAAYAME--LGADGVLLNTAVSG 211 (251)
T ss_dssp HHHHTCSCBEECSSS-TTCCCCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHH--TTCSEEEESHHHHT
T ss_pred HHHCCCHHHHHHHHH-HHCCCCCCCHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHH--CCCCEEEECHHHHC
T ss_conf 987487138876645-41488757867999998618--966897358898899999997--03999994436561
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=97.62 E-value=5e-05 Score=47.72 Aligned_cols=89 Identities=16% Similarity=0.080 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHH-----------HHHHHH
Q ss_conf 899999999975987899963--4456866787649999999998299944999298789887-----------999871
Q 005508 481 RIDSLIADIGTWGASAVTVHG--RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD-----------WNKHKS 547 (693)
Q Consensus 481 ~a~~la~~L~e~GvdaItIHg--Rtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eD-----------a~~~l~ 547 (693)
+..++|+.+.++|++.|++-. +++...+....+++.|.++++.+ .+||..-|||.|.+| |.+.+.
T Consensus 49 dP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~--~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~ 126 (323)
T d1jvna1 49 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV--FVPLTVGGGIKDIVDVDGTKIPALEVASLYFR 126 (323)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC--CSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCC--CEEEEEECCCCCHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999879998999978688777677740799998630256--64699845746388853100002689999997
Q ss_pred CCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 39996789771787628970367874
Q 005508 548 DCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 548 ~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
.|||=|.|+..|+.+|.++.++..
T Consensus 127 --~GadKVvI~T~ai~~p~~~~e~~~ 150 (323)
T d1jvna1 127 --SGADKVSIGTDAVYAAEKYYELGN 150 (323)
T ss_dssp --HTCSEEEECHHHHHHHHHHHHTTS
T ss_pred --CCCCEEEECHHHHHCHHHHHHHHH
T ss_conf --498768725377608477788775
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.60 E-value=0.00018 Score=44.09 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHH
Q ss_conf 89999999997598789996344568667876499999999982999449992987898879998713999678977178
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRG 560 (693)
+..++++.+.++|++.|+|-.-..... ....+++.+.++...+ .+|+...|+|.+.+++...+. .|++-|.++..
T Consensus 33 dP~~~a~~~~~~gadei~ivDl~~~~~-~~~~~~~~i~~i~~~~--~~pi~~gGGIr~~e~~~~ll~--~G~~kVii~s~ 107 (252)
T d1h5ya_ 33 DPVEMAVRYEEEGADEIAILDITAAPE-GRATFIDSVKRVAEAV--SIPVLVGGGVRSLEDATTLFR--AGADKVSVNTA 107 (252)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTT-THHHHHHHHHHHHHHC--SSCEEEESSCCSHHHHHHHHH--HTCSEEEESHH
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHC--CCCCEEECCCCHHHHHHHHHH--CCCCEEEECCC
T ss_conf 999999999987999899971334322-4540899999887504--886313045211455566752--48807983454
Q ss_pred HHHCCCCHHHHHH
Q ss_conf 7628970367874
Q 005508 561 ALIKPWIFTEIKE 573 (693)
Q Consensus 561 aL~nPwiF~eIk~ 573 (693)
++.+|.++.++.+
T Consensus 108 ~~~~~~~~~~~~~ 120 (252)
T d1h5ya_ 108 AVRNPQLVALLAR 120 (252)
T ss_dssp HHHCTHHHHHHHH
T ss_pred CCCCCCHHHHHHH
T ss_conf 4579616789998
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=97.58 E-value=0.002 Score=37.09 Aligned_cols=198 Identities=15% Similarity=0.063 Sum_probs=122.1
Q ss_pred EEECCCCCCCCHHHHHHHH---HCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEEC---C-CCHHHHHHHHH
Q ss_conf 8875698979399999999---909998991651000000288234453302679991999905---8-88999999999
Q 005508 342 LYLAPLTTVGNLPFRRVCK---VLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQIC---G-AYPDTLARTVE 414 (693)
Q Consensus 342 l~LAPMt~vtdlpFRrl~~---~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~---G-~~pe~~a~AAe 414 (693)
-.|.|-++ .--.+.+|. +||+..+|.--..+.-. -.+++ .+...+..=+. | +..+.-..-++
T Consensus 42 TlL~p~~t--~e~i~~lc~~A~~~~~aaVcV~P~~v~~a-------~~~L~--gs~v~v~tVigFP~G~~~~~~K~~Ea~ 110 (251)
T d1o0ya_ 42 TNLKPFAT--PDDIKKLCLEARENRFHGVCVNPCYVKLA-------REELE--GTDVKVVTVVGFPLGANETRTKAHEAI 110 (251)
T ss_dssp EECCTTCC--HHHHHHHHHHHHHHTCSEEEECGGGHHHH-------HHHHT--TSCCEEEEEESTTTCCSCHHHHHHHHH
T ss_pred CCCCCCCC--HHHHHHHHHHHHHCCCEEEEECHHHHHHH-------HHHHC--CCCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 37898899--99999999998516962999899999999-------99815--888427765267877773999999999
Q ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9765189869998388997431127743001379389999999840654-457799845899899468999999999759
Q 005508 415 LIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWG 493 (693)
Q Consensus 415 ~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G~~e~~~~a~~la~~L~e~G 493 (693)
.+. ..|+|.||+=+ .+|..+-.+.+.+.+-+++++++. +.++-|-+-++.-. .+.....+....++|
T Consensus 111 ~Ai-~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~-~~e~~~a~~ia~~aG 178 (251)
T d1o0ya_ 111 FAV-ESGADEIDMVI----------NVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLD-TEEKIAACVISKLAG 178 (251)
T ss_dssp HHH-HHTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCC-HHHHHHHHHHHHHTT
T ss_pred HHH-HCCCCEEEEEE----------CCCHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHHHHHC
T ss_conf 999-84995699973----------235001577899999999999984533214431212368-189999999999828
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHH
Q ss_conf 8789996344568667876499999999982999449992987898879998713999678977178762897036787
Q 005508 494 ASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 494 vdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk 572 (693)
+++|--... ...+.+..+-+..+++.++..+-|=+.|||.|++++.+++. .|++-+-...+. .|+++.+
T Consensus 179 adfvKTSTG----f~~~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~--aGa~riGtSs~~----~i~~~~~ 247 (251)
T d1o0ya_ 179 AHFVKTSTG----FGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIM--YGADRIGTSSGV----KIVQGGE 247 (251)
T ss_dssp CSEEECCCS----SSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH--TTCSEEEESCHH----HHHHHHH
T ss_pred CCEEECCCC----CCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH--HHHHHHCCCCHH----HHHHHHH
T ss_conf 542542688----77888678999999998677764846389599999999999--852774787479----9962676
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.49 E-value=0.0014 Score=38.15 Aligned_cols=66 Identities=5% Similarity=0.000 Sum_probs=43.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 568667876499999999982---9994499929878988799987139996789771787628970367874
Q 005508 504 RQQRYSKLADWDYIYQCARKA---SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 504 r~qryt~~Adw~~I~~i~~~~---~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
..|.+.. .-++.|.++++.. ..+++|..-||| +.+.+..+.+ .|||.+.+|++++..+.+-..+.+
T Consensus 143 ~Gq~f~~-~~~~ki~~l~~~~~~~~~~~~I~vDGGI-n~~~i~~l~~--aGad~~V~Gsaif~~~d~~~~i~~ 211 (217)
T d2flia1 143 GGQAFIP-ECLEKVATVAKWRDEKGLSFDIEVDGGV-DNKTIRACYE--AGANVFVAGSYLFKASDLVSQVQT 211 (217)
T ss_dssp SSCCCCG-GGHHHHHHHHHHHHHTTCCCEEEEESSC-CTTTHHHHHH--HTCCEEEESHHHHTSSCHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHHHHHHHCCCCEEEEEECCC-CHHHHHHHHH--CCCCEEEECHHHHCCCCHHHHHHH
T ss_conf 5442100-2478898888888750997489992787-8888999998--799999974488579999999999
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.46 E-value=0.0029 Score=36.08 Aligned_cols=209 Identities=11% Similarity=0.021 Sum_probs=127.8
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCC-CEEEEEECC-CCHH
Q ss_conf 64447821169388756989793999999999099989916510000002882344533026799-919999058-8899
Q 005508 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE-DLFGVQICG-AYPD 407 (693)
Q Consensus 330 p~ekk~l~l~nrl~LAPMt~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e-~pigvQL~G-~~pe 407 (693)
|..+.+..|..||++.-----+...........|+.++-.- +.-..+.+ ...+-.++..-... -.+-..-+| ..++
T Consensus 2 Pl~I~~~~f~SRLilGTGky~s~~~~~~ai~aSgaeiVTVA-vRR~~~~~-~~~~~~l~~~i~~~~~~~LPNTAGc~tae 79 (243)
T d1wv2a_ 2 PFVIAGRTYGSRLLVGTGKYKDLDETRRAIEASGAEIVTVA-VRRTNIGQ-NPDEPNLLDVIPPDRYTILPNTAGCYDAV 79 (243)
T ss_dssp CEEETTEEESCCEEECCSCSSSHHHHHHHHHHSCCSEEEEE-GGGCCC--------------CTTTSEEEEECTTCCSHH
T ss_pred CEEECCEEEECCEEEECCCCCCHHHHHHHHHHHCCCEEEEE-CCCCCCCC-CCCCCHHHHHCCCCCEEECCCCCCCCCHH
T ss_conf 84999898881157871789999999999998699789997-13516677-76540177760235703336520231599
Q ss_pred HHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 9999999976518-986999838899743112774300137938999999984065445779984589989946899999
Q 005508 408 TLARTVELIDQQC-TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLI 486 (693)
Q Consensus 408 ~~a~AAe~l~~~a-G~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la 486 (693)
+..++|+++.+.. +-++|.|.. ..+ --.|+-++-.+.+..+.+.+. ++-|..-+.. + ..++
T Consensus 80 eAv~~A~larE~~~~~~~iKLEV-------i~d--~~~L~Pd~~etl~Aa~~Lv~e-gF~Vlpy~~~----D----~v~a 141 (243)
T d1wv2a_ 80 EAVRTCRLARELLDGHNLVKLEV-------LAD--QKTLFPNVVETLKAAEQLVKD-GFDVMVYTSD----D----PIIA 141 (243)
T ss_dssp HHHHHHHHHHTTTTSCCEEEECC-------BSC--TTTCCBCHHHHHHHHHHHHTT-TCEEEEEECS----C----HHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEEE-------ECC--CCCCCCCHHHHHHHHHHHHCC-CEEEEECCCC----C----HHHH
T ss_conf 99999999999707982578765-------156--434488588889988876137-6678750687----8----8987
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf 99997598789996344568667876499999999982999449992987898879998713999678977178762
Q 005508 487 ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 487 ~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~ 563 (693)
++|++.|+.++---|-. -+.-.|..+...+..+.+.. ++|||.-+||-++.|+-.+++- |+|+|++..+.-.
T Consensus 142 k~le~~Gc~~vMplgsP-IGsg~Gi~n~~~l~~i~~~~--~vpvivdAGIg~psdaa~AMEl--G~dgVLvnsaIa~ 213 (243)
T d1wv2a_ 142 RQLAEIGCIAVMPLAGL-IGSGLGICNPYNLRIILEEA--KVPVLVDAGVGTASDAAIAMEL--GCEAVLMNTAIAH 213 (243)
T ss_dssp HHHHHSCCSEEEECSSS-TTCCCCCSCHHHHHHHHHHC--SSCBEEESCCCSHHHHHHHHHH--TCSEEEESHHHHT
T ss_pred HHHHHCCCEEEEECCCC-CCCCCCCCCHHHHHHCCCCC--CCCEEEECCCCCHHHHHHHHHC--CCCEEEECHHHHC
T ss_conf 67887175046632652-22463203678887600157--8336852466877779999974--5989986547663
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=0.00037 Score=41.95 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHH
Q ss_conf 89999999997598789996344568667876499999999982999449992987898879998713999678977178
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRG 560 (693)
+..++++.+.++|++.|+|-.-.+. ......+++.+.++.+.. .+|+..-|+|.+.+++...+. .|++-|.||..
T Consensus 31 dP~~~a~~~~~~g~dei~ivDld~~-~~~~~~~~~~i~~i~~~~--~~pi~vgGGIr~~e~i~~~l~--~Ga~kviigs~ 105 (253)
T d1thfd_ 31 DPVELGKFYSEIGIDELVFLDITAS-VEKRKTMLELVEKVAEQI--DIPFTVGGGIHDFETASELIL--RGADKVSINTA 105 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCS-SSHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHH--TTCSEEEESHH
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCC-CCCCCCHHHHHHHHHHCC--CCCCEEECCCCCCHHHHHHHH--CCCCEEEECHH
T ss_conf 9999999999869998999752132-247634799999998415--730024303000124466786--28989998748
Q ss_pred HHHCCCCHHHHHHC
Q ss_conf 76289703678740
Q 005508 561 ALIKPWIFTEIKEQ 574 (693)
Q Consensus 561 aL~nPwiF~eIk~~ 574 (693)
++.+|.++.++.+.
T Consensus 106 ~~~n~~~l~~~~~~ 119 (253)
T d1thfd_ 106 AVENPSLITQIAQT 119 (253)
T ss_dssp HHHCTHHHHHHHHH
T ss_pred HHHCHHHHHHHHHH
T ss_conf 85094999989998
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.43 E-value=0.00031 Score=42.52 Aligned_cols=111 Identities=12% Similarity=0.034 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHH
Q ss_conf 89999999997598789996344568667876499999999982999449992987898879998713999678977178
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRG 560 (693)
+..++++.+.++|++.|+|-.-...... ...+++.+..+.+.+ .+|+..-|||.|.+++...+. .|++-|.+|..
T Consensus 31 dP~~~a~~~~~~g~dei~iiDl~~~~~~-~~~~~~~i~~i~~~~--~~pi~vgGGIrs~e~~~~ll~--~Ga~kVii~s~ 105 (251)
T d1ka9f_ 31 DPVEAARAYDEAGADELVFLDISATHEE-RAILLDVVARVAERV--FIPLTVGGGVRSLEDARKLLL--SGADKVSVNSA 105 (251)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCSSTTC-HHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHHH--HTCSEEEECHH
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCC-CHHHHHHHHHHHHCC--CCCHHEECCCCCHHHHHHHHH--CCCCEEEECCH
T ss_conf 9999999999869998999844452123-316789999888604--851210115347888889997--48977998944
Q ss_pred HHHCCCCHHHHHHCC-----------------------CC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 762897036787406-----------------------89-9997899999999999999
Q 005508 561 ALIKPWIFTEIKEQR-----------------------HW-DITSGERLNIMKDFARFGL 596 (693)
Q Consensus 561 aL~nPwiF~eIk~~~-----------------------~~-d~s~~Erl~il~~~~~~~l 596 (693)
++.+|.++.++.+.. -| ..+.-+-.++++++.+++.
T Consensus 106 ~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 165 (251)
T d1ka9f_ 106 AVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGA 165 (251)
T ss_dssp HHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTC
T ss_pred HHHCHHHHHHHHHHHCCCCCCCCCCHHHCCCCEEEEECCCEECCCCCHHHHHHHHHHCCC
T ss_conf 543878999998762023322110200022102799514512078669999987775599
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=97.39 E-value=0.0035 Score=35.57 Aligned_cols=140 Identities=6% Similarity=0.024 Sum_probs=102.7
Q ss_pred CCEEEEEECCCCHHHHH-HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEE
Q ss_conf 99199990588899999-99999765189869998388997431127743001379389999999840654--4577998
Q 005508 394 EDLFGVQICGAYPDTLA-RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIK 470 (693)
Q Consensus 394 e~pigvQL~G~~pe~~a-~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVK 470 (693)
.-|+...++..+++... ++.+.+. .-||..+=|-+|-. .++.-.+.|+++++.+ ++.+.|.
T Consensus 5 ~ipv~~~~~~~~~~~~~~~~~~~~~-~~G~~~~KiKvG~~---------------~~~~Di~~i~~ir~~~g~~~~l~vD 68 (242)
T d1muca1 5 SLEVAWTLASGDTARDIAEARHMLE-IRRHRVFKLKIGAN---------------PVEQDLKHVVTIKRELGDSASVRVD 68 (242)
T ss_dssp EEEBCEEECCSCHHHHHHHHHHHHH-TTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEE
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHH-HCCCCEEEEEECCC---------------CHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5788899617991999999999999-78997799997999---------------9799999999999985899879874
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 45899899468999999999759878999634456866787649999999998299944999298789887999871399
Q 005508 471 VRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCP 550 (693)
Q Consensus 471 iR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~ 550 (693)
.--+| +..++.++++.|++.++.+| +|-. .+-|++..+++++.. ++||.+...+++..++..+++. .
T Consensus 69 aN~~~--~~~~A~~~~~~l~~~~i~~i-------EeP~-~~~d~~~~~~L~~~~--~~pIa~~E~~~~~~~~~~~i~~-~ 135 (242)
T d1muca1 69 VNQYW--DESQAIRACQVLGDNGIDLI-------EQPI-SRINRGGQVRLNQRT--PAPIMADESIESVEDAFSLAAD-G 135 (242)
T ss_dssp CTTCB--CHHHHHHHHHHHHHTTCCCE-------ECCB-CTTCHHHHHHHHHHC--SSCEEESTTCSSHHHHHHHHHH-T
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHHH-------HCCH-HHHHHHHHHHHHHHH--HHEEECCCCCCCCCCHHHHHHC-C
T ss_conf 69788--67888998888643258776-------0640-000144566664312--2023213432001221333320-2
Q ss_pred CCCEEEECHHHH
Q ss_conf 967897717876
Q 005508 551 ELASCMIARGAL 562 (693)
Q Consensus 551 gaDgVMIGRGaL 562 (693)
.+|.+++-=..+
T Consensus 136 ~~d~~~~d~~~~ 147 (242)
T d1muca1 136 AASIFALKIAKN 147 (242)
T ss_dssp CCSEEEECHHHH
T ss_pred CCCCCCCCCCCC
T ss_conf 122235553321
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=97.39 E-value=0.00088 Score=39.50 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 49999999998299944999298789887999871399967897717876289703678740689999789999999999
Q 005508 513 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFA 592 (693)
Q Consensus 513 dw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~~~~d~s~~Erl~il~~~~ 592 (693)
--+++.++++.. ++||+.-=||.+++++.. + .++|||.||.+.+ ..|.++. +....+.-+++++
T Consensus 190 ~~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~~-~---~~ADGvIVGSAiV------~~i~e~~----~~~~~~~~i~~~l 253 (271)
T d1ujpa_ 190 VKDLVRRIKART--ALPVAVGFGVSGKATAAQ-A---AVADGVVVGSALV------RALEEGR----SLAPLLQEIRQGL 253 (271)
T ss_dssp CHHHHHHHHTTC--CSCEEEESCCCSHHHHHH-H---TTSSEEEECHHHH------HHHHTTC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC--CCCEEEECCCCCHHHHHH-H---CCCCEEEECHHHH------HHHHHCC----CHHHHHHHHHHHH
T ss_conf 999987651156--687587478798899987-3---7799899868999------9998489----8999999999999
Q ss_pred H
Q ss_conf 9
Q 005508 593 R 593 (693)
Q Consensus 593 ~ 593 (693)
+
T Consensus 254 ~ 254 (271)
T d1ujpa_ 254 Q 254 (271)
T ss_dssp B
T ss_pred H
T ss_conf 9
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.29 E-value=0.00098 Score=39.20 Aligned_cols=109 Identities=14% Similarity=0.111 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHH
Q ss_conf 89999999997598789996344568667876499999999982999449992987898879998713999678977178
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRG 560 (693)
+...++..+.+.|++.|+|-.-.+.. .+..+++.+..++..+ .+||..-|||.|.+++.+.+. .|++-|.++..
T Consensus 32 dP~~~a~~~~~~ga~~l~i~DLd~~~--~~~~~~~~i~~i~~~~--~~pi~vGGGIrs~~~~~~ll~--~Ga~kVvi~s~ 105 (239)
T d1vzwa1 32 SPLEAALAWQRSGAEWLHLVDLDAAF--GTGDNRALIAEVAQAM--DIKVELSGGIRDDDTLAAALA--TGCTRVNLGTA 105 (239)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHH--TSCCCHHHHHHHHHHC--SSEEEEESSCCSHHHHHHHHH--TTCSEEEECHH
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCC--CCCCHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHC--CCCCCCHHHHH
T ss_conf 98999999998699889997300222--3440089999887640--860676300134301210001--26641135677
Q ss_pred HHHCCCCHHHHHHC------------------CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 76289703678740------------------689999789999999999999
Q 005508 561 ALIKPWIFTEIKEQ------------------RHWDITSGERLNIMKDFARFG 595 (693)
Q Consensus 561 aL~nPwiF~eIk~~------------------~~~d~s~~Erl~il~~~~~~~ 595 (693)
++.+|.++.++.+. .-|........+.++++.+++
T Consensus 106 ~~~~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~g 158 (239)
T d1vzwa1 106 ALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEG 158 (239)
T ss_dssp HHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHCCCCCEEEEEECCCEEEECCCCCEEECCCCCHHHHHHHHCC
T ss_conf 63301100111115771566530111034247663330132200113445416
|
| >d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: CCCH zinc finger superfamily: CCCH zinc finger family: CCCH zinc finger domain: Tristetraproline (ttp, tis11, nup475) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.26 E-value=6.4e-05 Score=47.00 Aligned_cols=34 Identities=32% Similarity=0.803 Sum_probs=28.6
Q ss_pred HHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 1000158824360699889998999978789345520
Q 005508 97 KKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKA 133 (693)
Q Consensus 97 ~~~~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~~yl~ 133 (693)
.+.+++||+.|..+| .|+||++|+|+|+.++...
T Consensus 5 ~~yKT~lC~~~~~~g---~C~~G~~C~FAHg~~ELr~ 38 (40)
T d1m9oa_ 5 SRYKTELCRTYSESG---RCRYGAKCQFAHGLGELRQ 38 (40)
T ss_dssp SCCCSCCCSGGGGTS---CCTTTTTCSSCSSSCCGGG
T ss_pred CCCCCCCCHHHHCCC---CCCCCCCCCCCCCHHHHCC
T ss_conf 764121175133588---3799897778788777257
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=97.21 E-value=0.0055 Score=34.25 Aligned_cols=148 Identities=10% Similarity=0.116 Sum_probs=107.7
Q ss_pred CEEEEEECCCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEE
Q ss_conf 91999905888-9999999999765189869998388997431127743001379389999999840654--45779984
Q 005508 395 DLFGVQICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKV 471 (693)
Q Consensus 395 ~pigvQL~G~~-pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKi 471 (693)
-|+...++..+ ++.+.++++.+. ..||..+-|.+|- ..++.=.+.|+++++++ ++.+.|..
T Consensus 6 vP~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~~KiKvG~---------------~~~~~D~~~v~~ir~~~g~~~~l~vDa 69 (244)
T d2chra1 6 IPIAWTLASGDTKRDLDSAVEMIE-RRRHNRFKVKLGF---------------RSPQDDLIHMEALSNSLGSKAYLRVDV 69 (244)
T ss_dssp EEBEEEECSSCHHHHHHHHHHHHH-TTSCCEEEEECSS---------------SCHHHHHHHHHHHHHHTTTTSEEEEEC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHH-HCCCCEEEEECCC---------------CCHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 878999738993999999999999-5799979998399---------------998999999999998467886699918
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 58998994689999999997598789996344568667876499999999982999449992987898879998713999
Q 005508 472 RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 551 (693)
Q Consensus 472 R~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~g 551 (693)
--+|+ ..++..+++.|++.++.++ +|-. .+-||+-.+++++.. ++||.+.-.+++..++.+++.. ..
T Consensus 70 N~~~~--~~~A~~~~~~l~~~~i~~i-------EeP~-~~~d~~~~~~l~~~~--~ipia~~E~~~~~~~~~~~i~~-~~ 136 (244)
T d2chra1 70 NQAWD--EQVASVYIPELEALGVELI-------EQPV-GRENTQALRRLSDNN--RVAIMADESLSTLASAFDLARD-RS 136 (244)
T ss_dssp TTCCC--THHHHHHHHHHHTTTCCEE-------ECCS-CSSCHHHHHHHHHHC--SSEEEESSSCCSHHHHHHHHTT-TC
T ss_pred CCCCC--HHHHHHHHHHHHHHHHHHH-------HHHH-HHCCCHHHHHHCCCE--EEEEEECCCCCCCCHHHHHHHC-CE
T ss_conf 98850--5778888988754068887-------2012-002411334414220--3566403444321013333101-22
Q ss_pred CCEEEECHHHHHCCCCHHHH
Q ss_conf 67897717876289703678
Q 005508 552 LASCMIARGALIKPWIFTEI 571 (693)
Q Consensus 552 aDgVMIGRGaL~nPwiF~eI 571 (693)
+|.|++--.-++-..-+.++
T Consensus 137 ~d~v~~d~~~~GGit~~~~i 156 (244)
T d2chra1 137 VDVFSLKLCNMGGVSATQKI 156 (244)
T ss_dssp CSEECCCHHHHTSHHHHHHH
T ss_pred EEEEEECCCCCCCHHHHHHH
T ss_conf 57873123445456889999
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=97.17 E-value=0.006 Score=33.99 Aligned_cols=140 Identities=11% Similarity=0.160 Sum_probs=102.1
Q ss_pred CEEEEEECCCCHHHH-HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEE
Q ss_conf 919999058889999-999999765189869998388997431127743001379389999999840654--45779984
Q 005508 395 DLFGVQICGAYPDTL-ARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKV 471 (693)
Q Consensus 395 ~pigvQL~G~~pe~~-a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKi 471 (693)
-|+...+++.+++.. .++++.+. ..||..+-|-.|- ..+..-.+.|+++++++ ++.+.|..
T Consensus 6 ipv~~~~~~~~~~~~~~e~~~~~~-~~G~~~~KiKvG~---------------~~~~~Di~~v~~ir~~~g~~~~l~vDa 69 (243)
T d1nu5a1 6 IPIAWTLASGDTARDIDSALEMIE-TRRHNRFKVKLGA---------------RTPAQDLEHIRSIVKAVGDRASVRVDV 69 (243)
T ss_dssp EEBCEEECSSCHHHHHHHHHHHHH-TTSCSEEEEECSS---------------SCHHHHHHHHHHHHHHHGGGCEEEEEC
T ss_pred EEEEEEECCCCHHHHHHHHHHHHH-HCCCCEEEEEECC---------------CCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 578999748991999999999999-6799979999299---------------997999999999999848666658877
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 58998994689999999997598789996344568667876499999999982999449992987898879998713999
Q 005508 472 RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 551 (693)
Q Consensus 472 R~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~g 551 (693)
--+| +.+++.++++.|.+.++.++ +|-. .+.+|+..+++++.. ++||.+.-.+++..++..+++. ..
T Consensus 70 N~~~--~~~~A~~~~~~l~~~~~~~i-------EeP~-~~~~~~~~~~l~~~~--~ipIa~gE~~~~~~~~~~~i~~-~~ 136 (243)
T d1nu5a1 70 NQGW--DEQTASIWIPRLEEAGVELV-------EQPV-PRANFGALRRLTEQN--GVAILADESLSSLSSAFELARD-HA 136 (243)
T ss_dssp TTCC--CHHHHHHHHHHHHHHTCCEE-------ECCS-CTTCHHHHHHHHHHC--SSEEEESTTCCSHHHHHHHHHT-TC
T ss_pred CCCC--CCHHHHHHHHHHCCHHHHHH-------HHHH-HHCCCCCCCCCHHCC--CCCCCCCCCCCCCHHHHHCCCC-CC
T ss_conf 8876--01158888887430046655-------3343-210112211000000--1110122333210001110244-54
Q ss_pred CCEEEECHHHHH
Q ss_conf 678977178762
Q 005508 552 LASCMIARGALI 563 (693)
Q Consensus 552 aDgVMIGRGaL~ 563 (693)
+|.+++--+-.+
T Consensus 137 ~d~~~~d~~~~G 148 (243)
T d1nu5a1 137 VDAFSLKLCNMG 148 (243)
T ss_dssp CSEEEECHHHHT
T ss_pred CCCCCCCCCCCC
T ss_conf 553221212466
|
| >d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: CCCH zinc finger superfamily: CCCH zinc finger family: CCCH zinc finger domain: Butyrate response factor 2 (Tis11D) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=4.4e-05 Score=48.10 Aligned_cols=30 Identities=37% Similarity=0.830 Sum_probs=26.3
Q ss_pred HCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 000158824360699889998999978789345
Q 005508 98 KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDG 130 (693)
Q Consensus 98 ~~~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~~ 130 (693)
+.+++||+.|..+| .|+||++|+|+|+.++
T Consensus 5 kyKT~lC~~f~~~g---~C~yG~~C~FaHg~~E 34 (34)
T d1rgoa2 5 KYKTELCRTFHTIG---FCPYGPRCHFIHNADE 34 (34)
T ss_dssp TTTCSBCHHHHHHS---CCTTGGGCSSBCCSCC
T ss_pred CCCCHHCCCCCCCC---CCCCCCCCCCCCCCCC
T ss_conf 73140061647877---0798995417688879
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.06 E-value=0.0076 Score=33.30 Aligned_cols=145 Identities=11% Similarity=-0.032 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCHHH
Q ss_conf 889999999999765189869998388997431127743001379389999999840654--457799845899899468
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 404 ~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR~G~~e~~~~ 481 (693)
..|+.+++.|+.+.+ .||..|-|..|.+-.. . ..+++.-.+.|+++++.+ ++.+.|..--+| +..+
T Consensus 22 ~tpe~~~~~a~~~~~-~Gf~~~Kik~g~~~~~-----~----~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~--~~~~ 89 (255)
T d1rvka1 22 ATPEDYGRFAETLVK-RGYKGIKLHTWMPPVS-----W----APDVKMDLKACAAVREAVGPDIRLMIDAFHWY--SRTD 89 (255)
T ss_dssp SSHHHHHHHHHHHHH-HTCSEEEEECCCTTST-----T----CCCHHHHHHHHHHHHHHHCTTSEEEEECCTTC--CHHH
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECCCCCCCC-----C----CCCHHHHHHHHHHHHHHCCCCCCEECCCCCCC--CCCH
T ss_conf 999999999999997-6999899817878666-----6----64899999999999987077644102444233--2101
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHH-HHHHHHHCCCCCCEEEECHH
Q ss_conf 99999999975987899963445686678764999999999829994499929878988-79998713999678977178
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL-DWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 482 a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~e-Da~~~l~~~~gaDgVMIGRG 560 (693)
+.++++.|++.++.+|- |-. .+-|++-.+++++.. ++||.+-..+++.. +...+++. ..+|.+++--+
T Consensus 90 A~~~~~~l~~~~l~~iE-------eP~-~~~d~~~~~~l~~~~--~~pI~~~E~~~~~~~~~~~~i~~-~~~dii~~d~~ 158 (255)
T d1rvka1 90 ALALGRGLEKLGFDWIE-------EPM-DEQSLSSYKWLSDNL--DIPVVGPESAAGKHWHRAEWIKA-GACDILRTGVN 158 (255)
T ss_dssp HHHHHHHHHTTTCSEEE-------CCS-CTTCHHHHHHHHHHC--SSCEEECSSCSSHHHHHHHHHHT-TCCSEEEECHH
T ss_pred HHHHHHHCCCCHHHHHC-------CCC-CCCCHHHHHHHHHHC--CCCEEEHHHCCCCHHHHHHHHHH-CHHHHCCCCCC
T ss_conf 34443101332045542-------885-310278999998850--31000012103404566665430-42343034434
Q ss_pred HHHCCCCHHHH
Q ss_conf 76289703678
Q 005508 561 ALIKPWIFTEI 571 (693)
Q Consensus 561 aL~nPwiF~eI 571 (693)
-++-..=..++
T Consensus 159 ~~GGit~~~~i 169 (255)
T d1rvka1 159 DVGGITPALKT 169 (255)
T ss_dssp HHTSHHHHHHH
T ss_pred CCCCCHHHHHH
T ss_conf 35440699999
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.06 E-value=0.004 Score=35.19 Aligned_cols=78 Identities=6% Similarity=0.033 Sum_probs=60.5
Q ss_pred HHHHHHCCCCEEEEECCC--CCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf 999997598789996344--568667876499999999982999449992987898879998713999678977178762
Q 005508 486 IADIGTWGASAVTVHGRT--RQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 486 a~~L~e~GvdaItIHgRt--r~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~ 563 (693)
+......|+|++.+..-- .......+..|+.+.++++.. ++||++-||| +.+++.+++. .|++||.+.++.+.
T Consensus 112 ~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~--~~Pv~AiGGI-~~~ni~~~~~--~Ga~gvAvis~I~~ 186 (206)
T d1xi3a_ 112 ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGI-NKDNAREVLK--TGVDGIAVISAVMG 186 (206)
T ss_dssp HHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSC-CTTTHHHHHT--TTCSEEEESHHHHT
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC--CCCEEEECCC-CHHHHHHHHH--HCCCEEEEHHHHHC
T ss_conf 99888669887985223345566545422379999988726--8988997799-9999999998--39989997599777
Q ss_pred CCCCH
Q ss_conf 89703
Q 005508 564 KPWIF 568 (693)
Q Consensus 564 nPwiF 568 (693)
.+..-
T Consensus 187 ~~dp~ 191 (206)
T d1xi3a_ 187 AEDVR 191 (206)
T ss_dssp SSSHH
T ss_pred CCCHH
T ss_conf 99999
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.05 E-value=0.0079 Score=33.21 Aligned_cols=180 Identities=12% Similarity=0.101 Sum_probs=102.3
Q ss_pred HHCCCCEE---EECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 99099989---916510000002882344533026799919999058889999999999765189869998388997431
Q 005508 360 KVLGADVT---CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIV 436 (693)
Q Consensus 360 ~~~Gadl~---~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v 436 (693)
...|++++ +.-...+..+..+. .....++.. ...++-+-|...+|+.+... .. .+|+|.|-+|.-.-.
T Consensus 24 ~~~~~d~iHiDimDg~Fvpn~t~~~-~~i~~i~~~-~~~~~dvHLMv~~p~~~i~~---~~-~~g~~~I~~H~E~~~--- 94 (220)
T d1h1ya_ 24 VRLGADWLHMDIMDGHFVPNLTIGA-PVIQSLRKH-TKAYLDCHLMVTNPSDYVEP---LA-KAGASGFTFHIEVSR--- 94 (220)
T ss_dssp HHTTCSEEEEEEEBSSSSSCBCBCH-HHHHHHHTT-CCSEEEEEEESSCGGGGHHH---HH-HHTCSEEEEEGGGCT---
T ss_pred HHCCCCEEEEEEECCCCCCCCCCCC-HHHHHHHHH-CCHHHHHHHHHCCHHHHHHH---HH-HCCCCEEEECCCCCC---
T ss_conf 9759998999620694466545583-666566542-45013438875105455577---65-302341564001010---
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC-CCCEEEEECC---CCCCCCCCCC
Q ss_conf 12774300137938999999984065445779984589989946899999999975-9878999634---4568667876
Q 005508 437 VNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW-GASAVTVHGR---TRQQRYSKLA 512 (693)
Q Consensus 437 ~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~-GvdaItIHgR---tr~qryt~~A 512 (693)
.. +.+++..+++. ++-+.+-+..+. ..+. +...+... -++.|.+-+- ...|.+.. .
T Consensus 95 ----------~~---~~~~i~~i~~~-g~~~Glal~p~t--~~~~---~~~~l~~~~~~d~vlim~v~PG~~GQ~f~~-~ 154 (220)
T d1h1ya_ 95 ----------DN---WQELIQSIKAK-GMRPGVSLRPGT--PVEE---VFPLVEAENPVELVLVMTVEPGFGGQKFMP-E 154 (220)
T ss_dssp ----------TT---HHHHHHHHHHT-TCEEEEEECTTS--CGGG---GHHHHHSSSCCSEEEEESSCTTCSSCCCCG-G
T ss_pred ----------HH---HHHHHHHHHHC-CCCCCEEECCCC--CHHH---HHHHHHCCCCCCEEEEEECCCCCCCCCCCH-H
T ss_conf ----------12---88999999974-977232421342--1567---877774235665688871479986444300-4
Q ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHH
Q ss_conf 499999999982999449992987898879998713999678977178762897036787
Q 005508 513 DWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 513 dw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk 572 (693)
-++-|.++++..+ ++.|..-||| +.+.+..+.+ .|||.+.+|++++.++..-..+.
T Consensus 155 ~l~kI~~l~~~~~-~~~I~VDGGI-n~~~i~~l~~--aGad~~V~GS~if~~~d~~~~i~ 210 (220)
T d1h1ya_ 155 MMEKVRALRKKYP-SLDIEVDGGL-GPSTIDVAAS--AGANCIVAGSSIFGAAEPGEVIS 210 (220)
T ss_dssp GHHHHHHHHHHCT-TSEEEEESSC-STTTHHHHHH--HTCCEEEESHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHCCC-CCEEEEEECC-CHHHHHHHHH--CCCCEEEECHHHHCCCCHHHHHH
T ss_conf 6679999986289-7629999257-9999999998--79999997879978999999999
|
| >d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: CCCH zinc finger superfamily: CCCH zinc finger family: CCCH zinc finger domain: Butyrate response factor 2 (Tis11D) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=8.4e-05 Score=46.23 Aligned_cols=32 Identities=31% Similarity=0.885 Sum_probs=27.7
Q ss_pred HCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 00015882436069988999899997878934552
Q 005508 98 KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFK 132 (693)
Q Consensus 98 ~~~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd~~~yl 132 (693)
+.+++||+.|...| .|+||++|+|+|+.++..
T Consensus 3 kyKT~lC~~~~~~g---~C~~G~~C~FAHg~~ELr 34 (36)
T d1rgoa1 3 RYKTELCRPFEESG---TCKYGEKCQFAHGFHELR 34 (36)
T ss_dssp TTTSSBCHHHHHHS---CCTTGGGCSSBSSGGGCC
T ss_pred CCCHHHCCCHHCCC---CCCCCCCCCCCCCHHHCC
T ss_conf 76530275332288---479999677868887804
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.03 E-value=0.0081 Score=33.12 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=85.0
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99997651898699983889974311277430013793899999998406544577998458998994689999999997
Q 005508 412 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT 491 (693)
Q Consensus 412 AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e 491 (693)
-|.+++ .+|.-.|--==--|.+ +++.| |-+-|.+|..+.+|++++ .+|+..|.|+|-. -=++.|++
T Consensus 13 qA~iAe-~aGAvaVmaLervpad-iR~~G-GvaRm~dp~~i~ei~~~v----sipvmak~righ~-------~eaqiLe~ 78 (254)
T d1znna1 13 QAKIAE-AAGAVAVMALERVPAD-IRAAG-GVARMADPTVIEEVMNAV----SIPVMAKVRIGHY-------VEARVLEA 78 (254)
T ss_dssp HHHHHH-HHTCSEEEECC----------C-CCCCCCCHHHHHHHHHHC----SSCEEEEEETTCH-------HHHHHHHH
T ss_pred HHHHHH-CCCCEEEEEECCCCHH-HHHCC-CCCCCCCHHHHHHHHHHC----CCCCCCCCCCCCH-------HHHHHHHH
T ss_conf 988864-0586367431247888-87238-836679989999999735----6442354577736-------77774886
Q ss_pred CCCCEEEEEC------------------------CC---------------CCCCCCCC---------------------
Q ss_conf 5987899963------------------------44---------------56866787---------------------
Q 005508 492 WGASAVTVHG------------------------RT---------------RQQRYSKL--------------------- 511 (693)
Q Consensus 492 ~GvdaItIHg------------------------Rt---------------r~qryt~~--------------------- 511 (693)
.|++++.-.- |+ |..+..+.
T Consensus 79 ~~vd~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~~~ 158 (254)
T d1znna1 79 LGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVV 158 (254)
T ss_dssp HTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHCCCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 17885307676010467876166533543457977655568999999999870896477748999999999999999997
Q ss_pred ---------------CCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCC
Q ss_conf ---------------6499999999982999449992987898879998713999678977178762897
Q 005508 512 ---------------ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 512 ---------------Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPw 566 (693)
+-.+++.++++.-..++|+|.-|||-++.|+-.+++ -|+|||.+|.|...-..
T Consensus 159 ~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~Me--lG~dgV~v~s~I~~s~d 226 (254)
T d1znna1 159 NMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMH--LGADGVFVGSGIFKSEN 226 (254)
T ss_dssp HSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHH--TTCSEEEECGGGGGSSC
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH--CCCCEEEECCHHHCCCC
T ss_conf 599889999998628946999999985787841771278787456999997--37988987504304899
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=96.99 E-value=0.0089 Score=32.87 Aligned_cols=127 Identities=7% Similarity=0.022 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCHH
Q ss_conf 8889999999999765189869998388997431127743001379389999999840654--45779984589989946
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKN 480 (693)
Q Consensus 403 G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR~G~~e~~~ 480 (693)
|.+|+.+++-|+.+. ..||..+-|..|. +++.-.+.|+++++.+ ++.|.|..-.+| +..
T Consensus 13 ~~s~ee~~~~a~~~~-~~Gf~~~KikvG~----------------~~~~di~~v~~vr~~~g~~~~l~vDaN~~~--~~~ 73 (252)
T d1yeya1 13 GYSDEKLVRLAKEAV-ADGFRTIKLKVGA----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRW--DVG 73 (252)
T ss_dssp ---CHHHHHHHHHHH-HTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCC--CHH
T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEEECCC----------------CHHHHHHHHHHHHHHHCCCCEEEECCCCCC--CHH
T ss_conf 999999999999999-8099989998999----------------989999999999998589951740345676--527
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEC
Q ss_conf 899999999975987899963445686678764999999999829994499929878988799987139996789771
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 481 ~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIG 558 (693)
++..+++.|.+.++.+|- |-. .+.|+....++.+... ++||.+.-.+++..++.++++. ..+|.+++-
T Consensus 74 ~A~~~~~~l~~~~~~~iE-------eP~-~~~d~~~~~~~~~~~~-~ipia~gE~~~~~~~~~~~i~~-~a~d~~~~d 141 (252)
T d1yeya1 74 PAIDWMRQLAEFDIAWIE-------EPT-SPDDVLGHAAIRQGIT-PVPVSTGEHTQNRVVFKQLLQA-GAVDLIQID 141 (252)
T ss_dssp HHHHHHHTTGGGCCSCEE-------CCS-CTTCHHHHHHHHHHST-TSCEECCTTCCSHHHHHHHHHH-TCCSEECCC
T ss_pred HHHHHHHHHHHCCCEEEC-------CCC-CHHHHHHHHHHHHCCC-CCCEECCCCCCCHHHHHHHHHC-CCCCEECCC
T ss_conf 788887766414863004-------776-6566899998753058-9851022102351246667662-640023023
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=96.88 E-value=0.011 Score=32.29 Aligned_cols=180 Identities=12% Similarity=0.079 Sum_probs=91.7
Q ss_pred HCCCCEEE---ECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 90999899---165100000028823445330267999199990588899999999997651898699983889974311
Q 005508 361 VLGADVTC---GEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVV 437 (693)
Q Consensus 361 ~~Gadl~~---TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~ 437 (693)
..|++.+. .-...+..+..+. .....++.. ...++-+-|.-.+|..+... +. .+|+|.|=+|.-|...
T Consensus 34 ~~g~d~iHiDImDG~Fvpn~t~~~-~~v~~i~~~-t~~~~dvHLMv~~P~~~i~~---~~-~~g~~~i~~H~E~~~~--- 104 (230)
T d1rpxa_ 34 QAGCDWIHVDVMDGRFVPNITIGP-LVVDSLRPI-TDLPLDVHLMIVEPDQRVPD---FI-KAGADIVSVHCEQSST--- 104 (230)
T ss_dssp HTTCCCEEEEEEBSSSSSCBCCCH-HHHHHHGGG-CCSCEEEEEESSSHHHHHHH---HH-HTTCSEEEEECSTTTC---
T ss_pred HCCCCEEEEECCCCCCCCCCCCCH-HHHHHHHHC-CCCEEEEEEEECCHHHHHHH---HH-HCCCCEEEEECCCCCC---
T ss_conf 749998999674697177655285-787665533-57506453332206666788---75-3256225773222353---
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCCCCCCCCCCH
Q ss_conf 27743001379389999999840654457799845899899468999999999759878999---634456866787649
Q 005508 438 NKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTV---HGRTRQQRYSKLADW 514 (693)
Q Consensus 438 ~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItI---HgRtr~qryt~~Adw 514 (693)
.+ +.++++.+++. ++.+.+=+..+. ..+.+..++. -+|.|.| ..+...|.|.. .-+
T Consensus 105 ---------~~---~~~~i~~ik~~-g~k~Gialnp~T--~~~~l~~~l~-----~vD~VllM~V~PGf~GQ~f~~-~~~ 163 (230)
T d1rpxa_ 105 ---------IH---LHRTINQIKSL-GAKAGVVLNPGT--PLTAIEYVLD-----AVDLVLIMSVNPGFGGQSFIE-SQV 163 (230)
T ss_dssp ---------SC---HHHHHHHHHHT-TSEEEEEECTTC--CGGGGTTTTT-----TCSEEEEESSCTTCSSCCCCT-THH
T ss_pred ---------CC---HHHHHHHHHHC-CCEEEEEECCCC--CHHHHHHHHH-----HCCEEEEEEECCCCCCCHHHH-HHH
T ss_conf ---------05---99999999986-985999967999--8799999996-----579899987368864200135-668
Q ss_pred HHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 9999999982---9994499929878988799987139996789771787628970367874
Q 005508 515 DYIYQCARKA---SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 515 ~~I~~i~~~~---~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
+.|.++++.. ..++.|..-||| +.+.+..+.+ .|||.+.+|++++.++.+-..|..
T Consensus 164 ~kI~~~~~~~~~~~~~~~I~vDGGI-n~~~i~~l~~--~Gad~~V~GS~if~~~d~~~~i~~ 222 (230)
T d1rpxa_ 164 KKISDLRKICAERGLNPWIEVDGGV-GPKNAYKVIE--AGANALVAGSAVFGAPDYAEAIKG 222 (230)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESSC-CTTTHHHHHH--HTCCEEEESHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCC-CHHHHHHHHH--CCCCEEEECHHHHCCCCHHHHHHH
T ss_conf 9999987777753773489998776-8999999997--699999988698789999999999
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=96.79 E-value=0.013 Score=31.83 Aligned_cols=141 Identities=11% Similarity=0.053 Sum_probs=103.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEECC
Q ss_conf 19999058889999999999765189869998388997431127743001379389999999840654--4577998458
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRT 473 (693)
Q Consensus 396 pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR~ 473 (693)
+...-+...+|+.+.+.|+.+. +.||+.+-|.+|.+ ++..-.+.|+++++++ ++.+.|-.--
T Consensus 6 ~~~~t~~~~~pe~~~~~a~~~~-~~G~~~~Kikig~~---------------~~~~d~~~i~~ir~~~g~~~~i~vD~N~ 69 (234)
T d1jpma1 6 ETDYTVSVNSPEEMAADAENYL-KQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDANQ 69 (234)
T ss_dssp EBCEEECCSCHHHHHHHHHHHH-HTTCCEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred EEEEEECCCCHHHHHHHHHHHH-HCCCCEEEEECCCC---------------CHHHHHHHHHHHHHHCCCHHHHHHHCCC
T ss_conf 6879975899999999999999-77999899989999---------------9899999999999873832444650433
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 99899468999999999759878999634456866787649999999998299944999298789887999871399967
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 474 G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaD 553 (693)
+| +..++..+++.|++.+....-+ +|-. .+-||+..+++++.. ++||.....+++..+..++++. ..+|
T Consensus 70 ~~--~~~~a~~~~~~le~~~~~i~~~-----EeP~-~~~d~~~~~~l~~~~--~~pia~gE~~~~~~~~~~~i~~-~~~d 138 (234)
T d1jpma1 70 GW--RPKEAVTAIRKMEDAGLGIELV-----EQPV-HKDDLAGLKKVTDAT--DTPIMADESVFTPRQAFEVLQT-RSAD 138 (234)
T ss_dssp CS--CHHHHHHHHHHHHHTTCCEEEE-----ECCS-CTTCHHHHHHHHHHC--SSCEEESTTCSSHHHHHHHHHT-TCCS
T ss_pred CC--CHHHHHHHHHHHHHCCCCEEEE-----CCCC-CCCCHHHHHHHHCCC--CCEEECCCCCCCCHHHHHHHCC-CCCC
T ss_conf 32--0377889999887606755530-----3774-325899998731143--2035235321010234334204-7767
Q ss_pred EEEECHHHHH
Q ss_conf 8977178762
Q 005508 554 SCMIARGALI 563 (693)
Q Consensus 554 gVMIGRGaL~ 563 (693)
.+++--..++
T Consensus 139 ~v~~d~~~~G 148 (234)
T d1jpma1 139 LINIKLMKAG 148 (234)
T ss_dssp EEEECHHHHT
T ss_pred EEEEEEECCC
T ss_conf 6888532378
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=96.79 E-value=0.013 Score=31.80 Aligned_cols=128 Identities=9% Similarity=-0.028 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCHH
Q ss_conf 8889999999999765189869998388997431127743001379389999999840654--45779984589989946
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKN 480 (693)
Q Consensus 403 G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR~G~~e~~~ 480 (693)
+.+++.+...++.+. ..||..+-|..|. ...+.-.+.|+++++.+ ++.|.+..-.+| +..
T Consensus 18 ~~~~~~~~~~~~~~~-~~Gf~~~Kikvg~---------------~~~~~di~~v~~vr~~~g~~~~l~vDan~~~--~~~ 79 (247)
T d1tzza1 18 GKGLSMLRGEMRGYL-DRGYNVVKMKIGG---------------APIEEDRMRIEAVLEEIGKDAQLAVDANGRF--NLE 79 (247)
T ss_dssp --CHHHHHHHHHHHH-TTTCSEEEEECSS---------------SCHHHHHHHHHHHHHHHTTTCEEEEECTTCC--CHH
T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEEECCC---------------CCHHHHHHHHHHHHHHCCCCCEEEECCCCCC--CCH
T ss_conf 969999999999999-8399989998999---------------9989999999999976068844874244355--413
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCC---CCCEEEE
Q ss_conf 8999999999759878999634456866787649999999998299944999298789887999871399---9678977
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCP---ELASCMI 557 (693)
Q Consensus 481 ~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~---gaDgVMI 557 (693)
++.++++.|++.++.+| +|-. .+-|++..+++++.. ++||.+.-.+++..++.++++... .+|.+++
T Consensus 80 ~Ai~~~~~l~~~~i~wi-------EeP~-~~~d~~~~~~l~~~~--~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~ 149 (247)
T d1tzza1 80 TGIAYAKMLRDYPLFWY-------EEVG-DPLDYALQAALAEFY--PGPMATGENLFSHQDARNLLRYGGMRPDRDWLQF 149 (247)
T ss_dssp HHHHHHHHHTTSCCSEE-------ECCS-CTTCHHHHHHHTTTC--CSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECC
T ss_pred HHHHHHHHCCHHHHHHH-------CCCC-CCCCCHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 67778763124466665-------0652-100210244454402--3320120243205779999982687676406762
Q ss_pred C
Q ss_conf 1
Q 005508 558 A 558 (693)
Q Consensus 558 G 558 (693)
.
T Consensus 150 d 150 (247)
T d1tzza1 150 D 150 (247)
T ss_dssp C
T ss_pred C
T ss_conf 2
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.71 E-value=0.015 Score=31.44 Aligned_cols=159 Identities=8% Similarity=0.069 Sum_probs=109.8
Q ss_pred HHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 00028823445330267999199990588899999999997651898699983889974311277430013793899999
Q 005508 376 NLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455 (693)
Q Consensus 376 ~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eI 455 (693)
....|....+..++.+ ..-|+...=|=-++.+..+|. .+|+|+|=|.++ ++ ..+.+.++
T Consensus 86 ~~F~Gs~~dl~~v~~~-~~~PiLrKDFIid~~QI~ea~-----~~GADaiLLI~~--------------~L-~~~~l~~l 144 (247)
T d1a53a_ 86 KYFNGSYETLRKIASS-VSIPILMKDFIVKESQIDDAY-----NLGADTVLLIVK--------------IL-TERELESL 144 (247)
T ss_dssp TTTCCCHHHHHHHHHH-CCSCEEEESCCCSHHHHHHHH-----HHTCSEEEEEGG--------------GS-CHHHHHHH
T ss_pred CCCCCCHHHHHHHHHC-CCCCEEECCCCCCHHHHHHHH-----HHHCCHHHHHHH--------------HC-CHHHHHHH
T ss_conf 5311134789999721-566613135325767899999-----703144455365--------------20-17888999
Q ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99840654457799845899899468999999999759878999634456866787649999999998299944999298
Q 005508 456 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD 535 (693)
Q Consensus 456 ikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGd 535 (693)
++..+. .++-+.|-+.. .. + +.+..+.|+..|-|-.|.-. +-..|.+-..++....|.++.+|+-+|
T Consensus 145 ~~~a~~-lgl~~LvEvh~-----~~---E-l~~a~~~~a~iIGINnRnL~---t~~vd~~~~~~L~~~ip~~~~~IaESG 211 (247)
T d1a53a_ 145 LEYARS-YGMEPLIEIND-----EN---D-LDIALRIGARFIGINSRDLE---TLEINKENQRKLISMIPSNVVKVAESG 211 (247)
T ss_dssp HHHHHT-TTCCCEEEECS-----HH---H-HHHHHHTTCSEEEEESBCTT---TCCBCHHHHHHHHHHSCTTSEEEEESC
T ss_pred HHHHHH-HHHHHHHHCCC-----HH---H-HHHHHHCCCCEEEEECCCHH---HHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 999999-86567761589-----99---9-99998179983766345756---543204689999852888986999638
Q ss_pred CCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHH
Q ss_conf 78988799987139996789771787628970367
Q 005508 536 IYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 570 (693)
Q Consensus 536 I~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~e 570 (693)
|.+.+|+..+.. .|+|+|.||.+++.+|....+
T Consensus 212 I~t~~dv~~l~~--~G~davLIGeaLmk~~d~~ke 244 (247)
T d1a53a_ 212 ISERNEIEELRK--LGVNAFLIGSSLMRNPEKIKE 244 (247)
T ss_dssp CCCHHHHHHHHH--TTCCEEEECHHHHHCTTHHHH
T ss_pred CCCHHHHHHHHH--CCCCEEEECHHHCCCCCHHHH
T ss_conf 999999999997--799999989887689966447
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=96.64 E-value=0.016 Score=31.14 Aligned_cols=148 Identities=9% Similarity=0.073 Sum_probs=95.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC-----CCC---CCC--CCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 199990588899999999997651898699983889974-----311---277--4300137938999999984065445
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPID-----IVV---NKG--AGSCLLTKPMRMKGIIEATSGTVDK 465 (693)
Q Consensus 396 pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~-----~v~---~~G--~GsaLl~rp~~l~eIikai~~~v~i 465 (693)
+++.=|.+.++++....++.+. ..|+..|||.+-+|.. .+. ..+ .|++-..+++.+.+.+.+= .
T Consensus 10 ~iipvlr~~~~~~a~~~~~al~-~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aG-----a 83 (202)
T d1wa3a1 10 KIVAVLRANSVEEAKEKALAVF-EGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESG-----A 83 (202)
T ss_dssp CEEEEECCSSHHHHHHHHHHHH-HTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHT-----C
T ss_pred CEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHC-----C
T ss_conf 9799997899999999999999-869988999558962899999999850898489851423378999998605-----6
Q ss_pred CEEEEECCCCCCC---------------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 7799845899899---------------4689999999997598789996344568667876499999999982999449
Q 005508 466 PITIKVRTGYFEG---------------KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQV 530 (693)
Q Consensus 466 PVTVKiR~G~~e~---------------~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPV 530 (693)
.+.| ..|++.+ -.+..++.. ..++|++.+-++.-. .+ | -.|++.++..+| .+|+
T Consensus 84 ~fiv--sP~~~~~v~~~~~~~~i~~iPGv~TpsEi~~-A~~~G~~~lK~fPa~---~~-G---~~~lk~l~~p~p-~i~~ 152 (202)
T d1wa3a1 84 EFIV--SPHLDEEISQFCKEKGVFYMPGVMTPTELVK-AMKLGHTILKLFPGE---VV-G---PQFVKAMKGPFP-NVKF 152 (202)
T ss_dssp SEEE--CSSCCHHHHHHHHHHTCEEECEECSHHHHHH-HHHTTCCEEEETTHH---HH-H---HHHHHHHHTTCT-TCEE
T ss_pred CEEE--CCCCCHHHHHHHHHCCCCEECCCCCHHHHHH-HHHCCCCEEEECCHH---HC-C---HHHHHHHHCCCC-CCCE
T ss_conf 4774--7877399999998659956178186889999-997799989754332---15-9---889999967224-7847
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCEEEECHHHHH
Q ss_conf 992987898879998713999678977178762
Q 005508 531 LGNGDIYSYLDWNKHKSDCPELASCMIARGALI 563 (693)
Q Consensus 531 IgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~ 563 (693)
+..||| +.+++.+.++ .|+.+|-+|..+..
T Consensus 153 iptGGI-~~~n~~~~l~--aga~avg~Gs~l~~ 182 (202)
T d1wa3a1 153 VPTGGV-NLDNVCEWFK--AGVLAVGVGSALVK 182 (202)
T ss_dssp EEBSSC-CTTTHHHHHH--HTCSCEEECHHHHC
T ss_pred EEECCC-CHHHHHHHHH--CCCEEEEECHHHCC
T ss_conf 865799-9888999997--89929998356248
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.37 E-value=0.016 Score=31.19 Aligned_cols=83 Identities=10% Similarity=-0.007 Sum_probs=58.8
Q ss_pred HHHHHHHCCCCEEEEECCCC---CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 99999975987899963445---686678764999999999829994499929878988799987139996789771787
Q 005508 485 LIADIGTWGASAVTVHGRTR---QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 485 la~~L~e~GvdaItIHgRtr---~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGa 561 (693)
-+....+.|+|+|.+-.--. ...+..+..++.+..++.... ++||++-||| +.+++.+++. +|++||.+.+++
T Consensus 127 e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~~-~~Pv~AiGGI-~~~ni~~l~~--~Ga~giAvis~I 202 (226)
T d2tpsa_ 127 EVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGI-SIPIVGIGGI-TIDNAAPVIQ--AGADGVSMISAI 202 (226)
T ss_dssp HHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTC-CCCEEEESSC-CTTTSHHHHH--TTCSEEEESHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCC-CCCEEEECCC-CHHHHHHHHH--HCCCEEEEHHHH
T ss_conf 99998857677698840211454321112355303678887447-8888982689-9999999999--499999973996
Q ss_pred HHCCCCHHHH
Q ss_conf 6289703678
Q 005508 562 LIKPWIFTEI 571 (693)
Q Consensus 562 L~nPwiF~eI 571 (693)
+..+.....+
T Consensus 203 ~~a~dp~~~~ 212 (226)
T d2tpsa_ 203 SQAEDPESAA 212 (226)
T ss_dssp HTSSCHHHHH
T ss_pred HCCCCHHHHH
T ss_conf 6699999999
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=96.35 E-value=0.0081 Score=33.14 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHH
Q ss_conf 89999999997598789996344568667876499999999982999449992987898879998713999678977178
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRG 560 (693)
+..++|+.+.+.|++.|+|-.-.... ..++.+...+..+++.. +||...|+|.|.+++.+.+. .|+|-|.++..
T Consensus 31 dP~~~a~~~~~~g~~~l~ivDLda~~-~~~~~~~~~~~~~~~~~---~pl~~gGGI~s~~~~~~~~~--~Ga~kVvi~s~ 104 (241)
T d1qo2a_ 31 DPVELVEKLIEEGFTLIHVVDLSNAI-ENSGENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRK--LGYRRQIVSSK 104 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEHHHHH-HCCCTTHHHHHHGGGGG---GGEEEESSCCSHHHHHHHHH--TTCCEEEECHH
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCCHHHEEHHCCCC---CCHHHHHHHHHHHHHHHCCC--CCCCEEECCCC
T ss_conf 99999999998799879999524520-14775022100001355---64353232100000111123--33326842752
Q ss_pred HHHCCCCHHHHHHC
Q ss_conf 76289703678740
Q 005508 561 ALIKPWIFTEIKEQ 574 (693)
Q Consensus 561 aL~nPwiF~eIk~~ 574 (693)
++.+|.+...+.+.
T Consensus 105 ~~~~~~~~~~~~~~ 118 (241)
T d1qo2a_ 105 VLEDPSFLKSLREI 118 (241)
T ss_dssp HHHCTTHHHHHHTT
T ss_pred CCCCCHHHHHHCCC
T ss_conf 33571221222035
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=96.29 E-value=0.026 Score=29.75 Aligned_cols=150 Identities=8% Similarity=0.038 Sum_probs=71.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 99919999058889999999999765189869998388997431127743001379389999999840654457799845
Q 005508 393 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 393 ~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR 472 (693)
...++-+-|...+|+.+.. .+. .+|+|.|=+|+-+-. .+. +.+++..+++. ++-+.+=+.
T Consensus 59 t~~~~dvHLMv~~P~~~i~---~~~-~~g~~~i~~H~E~~~--------------~~~-~~~~~~~i~~~-g~~~Gial~ 118 (221)
T d1tqja_ 59 TKKTLDVHLMIVEPEKYVE---DFA-KAGADIISVHVEHNA--------------SPH-LHRTLCQIREL-GKKAGAVLN 118 (221)
T ss_dssp CCSEEEEEEESSSGGGTHH---HHH-HHTCSEEEEECSTTT--------------CTT-HHHHHHHHHHT-TCEEEEEEC
T ss_pred CCCCEEEEEEEECHHHHHH---HHH-HCCCEEEEEEECCCC--------------CHH-HHHHHHHHHHC-CCCEEEEEC
T ss_conf 6762334678708889899---874-314527998622456--------------736-68999999977-997799964
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCCCCCCCCCHHHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHH
Q ss_conf 8998994689999999997598789996---344568667876499999999982---9994499929878988799987
Q 005508 473 TGYFEGKNRIDSLIADIGTWGASAVTVH---GRTRQQRYSKLADWDYIYQCARKA---SDDLQVLGNGDIYSYLDWNKHK 546 (693)
Q Consensus 473 ~G~~e~~~~a~~la~~L~e~GvdaItIH---gRtr~qryt~~Adw~~I~~i~~~~---~~~IPVIgNGdI~S~eDa~~~l 546 (693)
.+. ..+....++. -++.|.|= .....|.+.. .-++.|.++++.. ..++.|..-|||. .+.+..+.
T Consensus 119 p~T--~~~~l~~~l~-----~~d~vlvM~V~pG~~GQ~f~~-~~~~ki~~l~~~~~~~~~~~~I~VDGGIn-~~~i~~l~ 189 (221)
T d1tqja_ 119 PST--PLDFLEYVLP-----VCDLILIMSVNPGFGGQSFIP-EVLPKIRALRQMCDERGLDPWIEVDGGLK-PNNTWQVL 189 (221)
T ss_dssp TTC--CGGGGTTTGG-----GCSEEEEESSCC----CCCCG-GGHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTTHHHH
T ss_pred CCC--CHHHHHHHHH-----HHCEEEEEEECCCCCCCCCCH-HHHHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHH
T ss_conf 898--6889999973-----311899998647888742200-15799999886542036533799977768-89899999
Q ss_pred HCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 139996789771787628970367874
Q 005508 547 SDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 547 ~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
. .|||.+.+|++.+.++.+-..|..
T Consensus 190 ~--~Gad~~V~GS~if~~~d~~~~i~~ 214 (221)
T d1tqja_ 190 E--AGANAIVAGSAVFNAPNYAEAIAG 214 (221)
T ss_dssp H--HTCCEEEESHHHHTSSCHHHHHHH
T ss_pred H--CCCCEEEECHHHHCCCCHHHHHHH
T ss_conf 8--699999989588689999999999
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.029 Score=29.51 Aligned_cols=183 Identities=10% Similarity=-0.007 Sum_probs=96.4
Q ss_pred EEECCCCCCCCHHHHHHHHH---C--CCCEEEECCCCCCHHCCCCHHHHHHHHCCC-CCCEEEEEEC----CCCHHHHHH
Q ss_conf 88756989793999999999---0--999899165100000028823445330267-9991999905----888999999
Q 005508 342 LYLAPLTTVGNLPFRRVCKV---L--GADVTCGEMAMCTNLLQGQASEWALLRRHS-SEDLFGVQIC----GAYPDTLAR 411 (693)
Q Consensus 342 l~LAPMt~vtdlpFRrl~~~---~--Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~-~e~pigvQL~----G~~pe~~a~ 411 (693)
-.|.|-. |..-.+.+|.+ | ++..+|. .|..-... -.+++... +...+..=+. ....+.-..
T Consensus 18 T~L~~~~--T~~~i~~lc~~A~~~~~~~aaVCV-----~P~~v~~a--~~~l~~~~~~~v~v~tVigFP~G~~~~e~K~~ 88 (250)
T d1p1xa_ 18 TTLNDDD--TDEKVIALCHQAKTPVGNTAAICI-----YPRFIPIA--RKTLKEQGTPEIRIATVTNFPHGNDDIDIALA 88 (250)
T ss_dssp ECCCTTC--CHHHHHHHHHHTEETTEECSEEEC-----CGGGHHHH--HHHHHHTTCTTSEEEEEESTTTCCSCHHHHHH
T ss_pred CCCCCCC--CHHHHHHHHHHHHHHCCCEEEEEE-----CHHHHHHH--HHHHHHCCCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 7899889--999999999999753588689997-----86777999--99865127986228988256877860768899
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC---CCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 9999765189869998388997431127743001379389999999840654---4577998458998994689999999
Q 005508 412 TVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV---DKPITIKVRTGYFEGKNRIDSLIAD 488 (693)
Q Consensus 412 AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v---~iPVTVKiR~G~~e~~~~a~~la~~ 488 (693)
-++.+. ..|+|.||+=+ .+|.-+-.+.+.+.+-++.+++++ +.+|-|-+-++.-.+.+........
T Consensus 89 E~~~Ai-~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~i 157 (250)
T d1p1xa_ 89 ETRAAI-AYGADEVDVVF----------PYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEI 157 (250)
T ss_dssp HHHHHH-HHTCSEEEEEC----------CHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHH
T ss_pred HHHHHH-HCCCCEEEEEE----------CCHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999-81887688753----------3302105667899999999998614578538999714556869999999999
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHC-----CCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 997598789996344568667876499999999982-----999449992987898879998713
Q 005508 489 IGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKA-----SDDLQVLGNGDIYSYLDWNKHKSD 548 (693)
Q Consensus 489 L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~-----~~~IPVIgNGdI~S~eDa~~~l~~ 548 (693)
..++|+++|--... ...+.+..+-+..+.+.. +.++.|=+.|||.|++++.++++.
T Consensus 158 a~~aGadFvKTSTG----~~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ 218 (250)
T d1p1xa_ 158 SIKAGADFIKTSTG----KVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI 218 (250)
T ss_dssp HHHTTCSEEECCCS----CSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHH
T ss_pred HHHCCCCEEEECCC----CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99739673870688----68888888999999998554234764103745897999999999999
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=95.81 E-value=0.044 Score=28.29 Aligned_cols=128 Identities=9% Similarity=-0.015 Sum_probs=96.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCH
Q ss_conf 58889999999999765189869998388997431127743001379389999999840654--4577998458998994
Q 005508 402 CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGK 479 (693)
Q Consensus 402 ~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR~G~~e~~ 479 (693)
...+++.+.+-++.+. ..||..+-|..|-+ .++.-.+.|+++++.+ ++.+.|-.--+| +.
T Consensus 9 ~~d~~~~~~e~~~~~~-~~G~~~~KikvG~~---------------~~~~di~~i~~ir~~~g~~~~l~vDaN~~~--~~ 70 (227)
T d2mnra1 9 SLDGVKLATERAVTAA-ELGFRAVKTKIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYNQSL--DV 70 (227)
T ss_dssp CSCHHHHHHHHHHHHH-HTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSEEEEECTTCS--CH
T ss_pred CCCCHHHHHHHHHHHH-HCCCCEEEECCCCC---------------CHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CH
T ss_conf 8783999999999999-77999899816999---------------889999999999998599928998034368--82
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEC
Q ss_conf 6899999999975987899963445686678764999999999829994499929878988799987139996789771
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 480 ~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIG 558 (693)
.++..+++.|++.|+.++ +|-. .+-+++..+++++.. ++||.+.-.+++.++...+++. ..+|.+++-
T Consensus 71 ~~A~~~~~~l~~~~~~~i-------EeP~-~~~~~~~~~~l~~~~--~ipia~gE~~~~~~~~~~~~~~-~~~d~~~~d 138 (227)
T d2mnra1 71 PAAIKRSQALQQEGVTWI-------EEPT-LQHDYEGHQRIQSKL--NVPVQMGENWLGPEEMFKALSI-GACRLAMPD 138 (227)
T ss_dssp HHHHHHHHHHHHHTCSEE-------ECCS-CTTCHHHHHHHHHTC--SSCEEECTTCCSHHHHHHHHHT-TCCSEECCB
T ss_pred HHHHHHHHHHHHCHHHHH-------CCCC-CCCCHHHHHHHHHHC--CCCCCCCCEEEEECHHHHHHHC-CCEEEEECC
T ss_conf 777788887641204432-------3762-111134567999875--8860158556761113566751-741466324
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.73 E-value=0.047 Score=28.11 Aligned_cols=196 Identities=12% Similarity=0.071 Sum_probs=102.0
Q ss_pred EECCCCCCCCHHHHHHHH---HCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEE----CCCCHHHHHHHHHH
Q ss_conf 875698979399999999---90999899165100000028823445330267999199990----58889999999999
Q 005508 343 YLAPLTTVGNLPFRRVCK---VLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQI----CGAYPDTLARTVEL 415 (693)
Q Consensus 343 ~LAPMt~vtdlpFRrl~~---~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL----~G~~pe~~a~AAe~ 415 (693)
.|.|-. |..-.+.+|. +||+..+|--=..+ ++. . .++.. +...+..=+ .....+.-..-++.
T Consensus 28 lL~~~~--T~~~i~~lc~~A~~~~~~avcV~p~~v-~~a---~---~~l~~--s~v~v~tVigFP~G~~~~~~k~~E~~~ 96 (234)
T d1n7ka_ 28 LLSPRA--TEEDVRNLVREASDYGFRCAVLTPVYT-VKI---S---GLAEK--LGVKLCSVIGFPLGQAPLEVKLVEAQT 96 (234)
T ss_dssp CCCTTC--CHHHHHHHHHHHHHHTCSEEEECHHHH-HHH---H---HHHHH--HTCCEEEEESTTTCCSCHHHHHHHHHH
T ss_pred CCCCCC--CHHHHHHHHHHHHHHCCEEEEECCHHH-HHH---H---HHHHC--CCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 799899--999999999999983990999890869-999---9---98625--787458997127778839999999999
Q ss_pred HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 76518986999838899743112774300137938999999984065445779984589989946899999999975987
Q 005508 416 IDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGAS 495 (693)
Q Consensus 416 l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~Gvd 495 (693)
+. ..|+|.||+-+ + .|.......+.+.++++... ..+.++-|-+-++.. +.......+....++|++
T Consensus 97 Ai-~~GAdEID~Vi--------n--~~~~~~~~~~ev~~~~~~~~-~~g~~lKVIlEt~~L-~~~~i~~a~~~a~~aGad 163 (234)
T d1n7ka_ 97 VL-EAGATELDVVP--------H--LSLGPEAVYREVSGIVKLAK-SYGAVVKVILEAPLW-DDKTLSLLVDSSRRAGAD 163 (234)
T ss_dssp HH-HHTCCEEEECC--------C--GGGCHHHHHHHHHHHHHHHH-HTTCEEEEECCGGGS-CHHHHHHHHHHHHHTTCS
T ss_pred HH-HCCCCEEEEEE--------C--HHHHHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCC-CHHHHHHHHHHHHHHHHH
T ss_conf 99-86997699985--------1--23344453778999999874-158638999751336-467999999999886412
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHH
Q ss_conf 8999634456866787649999999998-2999449992987898879998713999678977178762897036787
Q 005508 496 AVTVHGRTRQQRYSKLADWDYIYQCARK-ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 496 aItIHgRtr~qryt~~Adw~~I~~i~~~-~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk 572 (693)
+|--.. +.+...+...-+..+.+. .+..+.|=+.|||.|++|+.++++ .|++-+-...+. -|+++++
T Consensus 164 FVKTST----G~~~~gat~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~--aGa~rIGtSs~~----~I~~e~~ 231 (234)
T d1n7ka_ 164 IVKTST----GVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVG--AGADIIGTSSAV----KVLESFK 231 (234)
T ss_dssp EEESCC----SSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHH--TTCSEEEETTHH----HHHHHHH
T ss_pred HEEECC----CCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH--CCCCEEECCHHH----HHHHHHH
T ss_conf 502266----6568998779999999986079971880479699999999998--067134216199----9999998
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=95.68 E-value=0.049 Score=27.99 Aligned_cols=197 Identities=10% Similarity=0.023 Sum_probs=118.0
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCCCHHHH-----------HHHHCCCCCCEEEEEE-C---CCCHHHHHHH
Q ss_conf 89793999999999099989916510000002882344-----------5330267999199990-5---8889999999
Q 005508 348 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEW-----------ALLRRHSSEDLFGVQI-C---GAYPDTLART 412 (693)
Q Consensus 348 t~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~e~-----------~ll~~h~~e~pigvQL-~---G~~pe~~a~A 412 (693)
.|.-|.+|-+++.+.|.|++....-+... ++|..++. ..+++......+++.+ + ....+...++
T Consensus 20 lTayd~~~A~~ae~agiDiilVGDSlgm~-~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~~~~~~~~~a 98 (260)
T d1o66a_ 20 LTAYESSFAALMDDAGVEMLLVGDSLGMA-VQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAA 98 (260)
T ss_dssp EECCSHHHHHHHHHTTCCEEEECTTHHHH-TTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHH
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCCHHE-ECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCHHHHHHHH
T ss_conf 96899999999998699899980774200-23777766440555443469987068640110244444300015789999
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC-----CC---------CCC
Q ss_conf 9997651898699983889974311277430013793899999998406544577998458-----99---------899
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT-----GY---------FEG 478 (693)
Q Consensus 413 Ae~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~-----G~---------~e~ 478 (693)
+.++. ++|+|+|-|-.|.- ..++|+++.+ .++||.--+.+ .| .+.
T Consensus 99 ~~~~~-~~gadavk~eg~~~-------------------~~~~i~~l~~-~gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e 157 (260)
T d1o66a_ 99 AAELM-AAGAHMVKLEGGVW-------------------MAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKVQGRGGK 157 (260)
T ss_dssp HHHHH-HTTCSEEEEECSGG-------------------GHHHHHHHHH-TTCCEEEEEESCGGGTTC-----------C
T ss_pred HHHHH-HHHHHHCCCCCHHH-------------------HHHHHHHHHH-CCCEEEEECCCCCCHHEECCCCEECCCCCH
T ss_conf 99987-74111110230244-------------------5688999997-497268651022101101376112043300
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEE-E
Q ss_conf 468999999999759878999634456866787649999999998299944999298789887999871399967897-7
Q 005508 479 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM-I 557 (693)
Q Consensus 479 ~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVM-I 557 (693)
.....+.+..|+++|+.+|.+-.- --+...++.+.+ +||+||-|.= .+|||-+ +
T Consensus 158 ~~~l~~~a~~le~AGa~~ivlE~V----------p~~va~~It~~~--~iptIgIGaG-------------~~cDGQvLv 212 (260)
T d1o66a_ 158 AQALLNDAKAHDDAGAAVVLMECV----------LAELAKKVTETV--SCPTIGIGAG-------------ADCDGQVLV 212 (260)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESC----------CHHHHHHHHHHC--SSCEEEESSC-------------SCSSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHEHHHHHC----------CHHHHHHHHHHH--CCEEEECCCC-------------CCCCEEEEE
T ss_conf 599999999999733233255440----------077899998642--5015542577-------------888736896
Q ss_pred CHHHHH-CCC-CHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 178762-897-0367874068999978999999999999
Q 005508 558 ARGALI-KPW-IFTEIKEQRHWDITSGERLNIMKDFARF 594 (693)
Q Consensus 558 GRGaL~-nPw-iF~eIk~~~~~d~s~~Erl~il~~~~~~ 594 (693)
.--+|+ .++ ...-.+. +.+. ..++.+-+++|.+.
T Consensus 213 ~~DllG~~~~~~Pkf~k~--y~n~-~~~~~~A~~~y~~d 248 (260)
T d1o66a_ 213 MHDMLGIFPGKTAKFVKN--FMQG-HDSVQAAVRAYVAE 248 (260)
T ss_dssp HHHHTTCSSSSCCTTCCC--SSTT-CSSHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCHHHH--HHHH-HHHHHHHHHHHHHH
T ss_conf 487447898999971998--8857-99999999999999
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.049 Score=27.98 Aligned_cols=197 Identities=15% Similarity=0.057 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCC--HHCCCCHH--HHH-HH---H--CCCCCCEEEEEEC---CCCHHHHHHHHHHH
Q ss_conf 79399999999909998991651000--00028823--445-33---0--2679991999905---88899999999997
Q 005508 350 VGNLPFRRVCKVLGADVTCGEMAMCT--NLLQGQAS--EWA-LL---R--RHSSEDLFGVQIC---GAYPDTLARTVELI 416 (693)
Q Consensus 350 vtdlpFRrl~~~~Gadl~~TEMv~a~--~L~~g~~~--e~~-ll---~--~h~~e~pigvQL~---G~~pe~~a~AAe~l 416 (693)
+-|..--++..+.|++.+|+--.... .+.....+ .+. ++ + .....-|+++-+- |+.+....+.++.+
T Consensus 23 ~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~v~~~v~~~ 102 (289)
T d1muma_ 23 TINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSM 102 (289)
T ss_dssp CSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 88889999999839999970289999776699988878768999999988603578846652222343123899999999
Q ss_pred HHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCC--CCHHHHHHHHHHHHHCCC
Q ss_conf 651898699983889974311277430013793899999998406544577998458998--994689999999997598
Q 005508 417 DQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF--EGKNRIDSLIADIGTWGA 494 (693)
Q Consensus 417 ~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~--e~~~~a~~la~~L~e~Gv 494 (693)
. .+|+.+|.|-=. ..++.+....|-.+...-+.+.+|-.++....+..+.+--|+... ...+++++=+....++|+
T Consensus 103 ~-~aGvagi~iEDq-~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~~aY~eAGA 180 (289)
T d1muma_ 103 I-KAGAAGLHIEDQ-VGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGA 180 (289)
T ss_dssp H-HHTCSEEEEECB-CCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTC
T ss_pred H-HCCCCEEEECCC-CCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9-779978986586-36655566665321069988789999997169962421123366320479999999997664599
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE---CCCCCHHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 789996344568667876499999999982999449992---9878988799987139996789771787
Q 005508 495 SAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGN---GDIYSYLDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 495 daItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgN---GdI~S~eDa~~~l~~~~gaDgVMIGRGa 561 (693)
|+|-+++. .+.+.+.++++.++ +|+..| |+....-++.+ |.+ -|+..|..+-.+
T Consensus 181 D~vf~~~~---------~~~~~~~~~~~~~~--~Pl~~~~~~~~~~p~~s~~e-L~~-~Gv~~v~~~~~~ 237 (289)
T d1muma_ 181 EMLFPEAI---------TELAMYRQFADAVQ--VPILANITEFGATPLFTTDE-LRS-AHVAMALYPLSA 237 (289)
T ss_dssp SEEEETTC---------CCHHHHHHHHHHHC--SCBEEECCSSSSSCCCCHHH-HHH-TTCSEEEESSHH
T ss_pred CEEEECCC---------CCHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHHH-HHH-HCCCEEEECHHH
T ss_conf 58984588---------99999999987359--98797625767786403999-997-105367753489
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=95.67 E-value=0.022 Score=30.28 Aligned_cols=120 Identities=16% Similarity=0.156 Sum_probs=50.2
Q ss_pred HHCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCC----CCCCC
Q ss_conf 99099989916510000002882344533026799919999058889999999999765189869998388----99743
Q 005508 360 KVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMG----CPIDI 435 (693)
Q Consensus 360 ~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~G----CP~~~ 435 (693)
.+.|+|+++-..+..+... .......++......++++ ||-. . .++|+.+. .+|+|+|=+-+| |-...
T Consensus 160 ~~aG~D~ivID~AhG~s~~--~~~~i~~ik~~~~~v~vIa---GNV~-T-~e~a~~L~-~~GaD~VkVGiGpGs~CtTr~ 231 (388)
T d1eepa_ 160 VKAHVDILVIDSAHGHSTR--IIELIKKIKTKYPNLDLIA---GNIV-T-KEAALDLI-SVGADCLKVGIGPGSICTTRI 231 (388)
T ss_dssp HHTTCSEEEECCSCCSSHH--HHHHHHHHHHHCTTCEEEE---EEEC-S-HHHHHHHH-TTTCSEEEECSSCSTTSHHHH
T ss_pred HHHCCCEEEEECCCCCHHH--HHHHHHHHHHHCCCCCEEE---CCCC-C-HHHHHHHH-HCCCCEEEECCCCCCCCCCCC
T ss_conf 7512545431036631677--9999999998789986650---0126-7-99999998-629775543122232345654
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 11277430013793899999998406544577998458998994689999999997598789996
Q 005508 436 VVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 500 (693)
Q Consensus 436 v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIH 500 (693)
+. |.|- -+..-+.++.++.. ...+||..- -|. .+.-.+++.| .+|+|++-+-
T Consensus 232 ~~--GvG~---pq~sai~~~~~~~~-~~~vpiIAD--GGi----~~~Gdi~KAl-a~GAd~VMlG 283 (388)
T d1eepa_ 232 VA--GVGV---PQITAICDVYEACN-NTNICIIAD--GGI----RFSGDVVKAI-AAGADSVMIG 283 (388)
T ss_dssp HH--CCCC---CHHHHHHHHHHHHT-TSSCEEEEE--SCC----CSHHHHHHHH-HHTCSEEEEC
T ss_pred CC--CCCC---CHHHHHHHHHHHHC-CCCCEEEEC--CCC----CCCCCEEEEE-EECCCEEECC
T ss_conf 23--6674---23889999999861-577157853--666----7377301367-8515503405
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=95.58 E-value=0.034 Score=29.01 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=76.6
Q ss_pred HHHHHHHCCCCEEEECCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999765189869998388-9974311277430013793899999998406544577998458998994689999999997
Q 005508 413 VELIDQQCTVDFIDINMG-CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGT 491 (693)
Q Consensus 413 Ae~l~~~aG~D~IDLN~G-CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e 491 (693)
++.+. .+|++++-|+-+ ... ...-+.+.+....+. ++.+.+-+ | + . .-+.....
T Consensus 78 ~~~l~-~~g~~~viigHsErR~--------------~~~e~~~~~~~~~~~-gl~~ivcv--g--e-~----~~~~~~~~ 132 (226)
T d1w0ma_ 78 LENIK-EAGGSGVILNHSEAPL--------------KLNDLARLVAKAKSL-GLDVVVCA--P--D-P----RTSLAAAA 132 (226)
T ss_dssp HHHHH-HHTCCEEEECCTTSCC--------------BHHHHHHHHHHHHHT-TCEEEEEE--S--S-H----HHHHHHHH
T ss_pred HHHHC-CCCCCEEEEECHHHHH--------------HCCCHHHHHHHHHHC-CCEEEEEC--C--C-H----HHHHHHHC
T ss_conf 76632-4444258850412233--------------020168999999986-99899955--8--4-1----77664102
Q ss_pred CCCCEEEEECCCCCCCCC--CCCCHH----HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCC
Q ss_conf 598789996344568667--876499----99999998299944999298789887999871399967897717876289
Q 005508 492 WGASAVTVHGRTRQQRYS--KLADWD----YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 492 ~GvdaItIHgRtr~qryt--~~Adw~----~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nP 565 (693)
.+.+.|.+-+...-+.-. .+.+-+ .++.+.+..+ ++||+.-|+|.+.++...++. .|+|||.||++.|.-+
T Consensus 133 ~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~-~i~vlygGgV~~~n~~~~~~~--~g~dGvLVGsA~l~a~ 209 (226)
T d1w0ma_ 133 LGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFP-EVSVITGAGIESGDDVAAALR--LGTRGVLLASAAVKAK 209 (226)
T ss_dssp TCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHH--TTCSEEEECHHHHTCS
T ss_pred CCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCEEEEECCCCCHHHHHHHHC--CCCCEEEECHHEECCC
T ss_conf 4651366435332037889880455576655543102478-822999437577679999743--8998899613100688
Q ss_pred CCHHHHHH
Q ss_conf 70367874
Q 005508 566 WIFTEIKE 573 (693)
Q Consensus 566 wiF~eIk~ 573 (693)
..|..|.+
T Consensus 210 d~~~~i~~ 217 (226)
T d1w0ma_ 210 DPYAKIVE 217 (226)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
T ss_conf 98999999
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.56 E-value=0.054 Score=27.68 Aligned_cols=180 Identities=16% Similarity=0.101 Sum_probs=99.5
Q ss_pred EEECCCCCCCCHHHHHHHH---HCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEEC---CCCHHHHH-HHHH
Q ss_conf 8875698979399999999---909998991651000000288234453302679991999905---88899999-9999
Q 005508 342 LYLAPLTTVGNLPFRRVCK---VLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQIC---GAYPDTLA-RTVE 414 (693)
Q Consensus 342 l~LAPMt~vtdlpFRrl~~---~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~---G~~pe~~a-~AAe 414 (693)
-.|.|..+ .--.+.+|. +||+..+|.-=..+. +.+..-++..+..=+. |..+.... ..++
T Consensus 8 TlL~p~~t--~~~i~~~~~~A~~~~~aavcV~P~~v~-----------~a~~~l~~~~v~tVigFP~G~~~~~~k~~e~~ 74 (226)
T d1vcva1 8 ALLKPYLT--VDEAVAGARKAEELGVAAYCVNPIYAP-----------VVRPLLRKVKLCVVADFPFGALPTASRIALVS 74 (226)
T ss_dssp ECCCTTCC--HHHHHHHHHHHHHHTCSEEEECGGGHH-----------HHGGGCSSSEEEEEESTTTCCSCHHHHHHHHH
T ss_pred CCCCCCCC--HHHHHHHHHHHHHHCCEEEEECHHHHH-----------HHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 58999999--999999999998869809998989999-----------99985368745899722766674899999999
Q ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9765189869998388997431127743001379389999999840654-457799845899899468999999999759
Q 005508 415 LIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGTWG 493 (693)
Q Consensus 415 ~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G~~e~~~~a~~la~~L~e~G 493 (693)
.+. .|+|.||+=+ .+|..+-.+.+.+.+-++.++.+. +.++-|-+-++.-. .++....+..+.++|
T Consensus 75 a~~--~GAdEID~Vi----------n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~-~~ei~~~~~~~~~aG 141 (226)
T d1vcva1 75 RLA--EVADEIDVVA----------PIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLR-DEERYTLYDIIAEAG 141 (226)
T ss_dssp HHT--TTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCC-HHHHHHHHHHHHHHT
T ss_pred HHH--CCCCEEEEEE----------CHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHHHHHHHCC
T ss_conf 998--0897168875----------589985788999999999998615898588873245467-799999999999719
Q ss_pred CCEEEE-ECCCC------CCCCCC--CCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 878999-63445------686678--7649999999998299944999298789887999871
Q 005508 494 ASAVTV-HGRTR------QQRYSK--LADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 547 (693)
Q Consensus 494 vdaItI-HgRtr------~qryt~--~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~ 547 (693)
+|+|-- +|-.. ...+.+ +.+...+.+..+....++-|=+.|||.|++++.++++
T Consensus 142 adFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~ 204 (226)
T d1vcva1 142 AHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVD 204 (226)
T ss_dssp CSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 661661466567765333467666759999999999998698626977689799999999998
|
| >d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: CCCH zinc finger superfamily: CCCH zinc finger family: CCCH zinc finger domain: Tristetraproline (ttp, tis11, nup475) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.43 E-value=0.0031 Score=35.84 Aligned_cols=29 Identities=28% Similarity=0.628 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88998857622369999853346766533
Q 005508 140 EGECPFLSSEGPCPYGLACRFSGTHRDVV 168 (693)
Q Consensus 140 ~~~Cp~f~~~G~Cp~G~~CrF~~sH~~~~ 168 (693)
+..|+.|...|+||||.+|+|+.+.-+..
T Consensus 9 T~lC~~~~~~g~C~~G~~C~FAHg~~ELr 37 (40)
T d1m9oa_ 9 TELCRTYSESGRCRYGAKCQFAHGLGELR 37 (40)
T ss_dssp SCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCHHHHC
T ss_conf 21175133588379989777878877725
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=95.26 E-value=0.068 Score=27.04 Aligned_cols=177 Identities=12% Similarity=0.049 Sum_probs=107.2
Q ss_pred HHHHCCCCEE--EECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 9999099989--91651000000288234453302679991999905888999999999976518986999838899743
Q 005508 358 VCKVLGADVT--CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDI 435 (693)
Q Consensus 358 l~~~~Gadl~--~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~ 435 (693)
.+...||..+ .|| .....|....+..++.. ..-|+-..=|=-++.+..+|. .+|+|+|=|..
T Consensus 73 ~y~~~GA~aiSVLTe----~~~F~Gs~~dl~~v~~~-~~iPvLrKDFIid~~QI~ea~-----~~GADaVLLIa------ 136 (254)
T d1vc4a_ 73 AYARGGARAVSVLTE----PHRFGGSLLDLKRVREA-VDLPLLRKDFVVDPFMLEEAR-----AFGASAALLIV------ 136 (254)
T ss_dssp HHHHTTCSEEEEECC----CSSSCCCHHHHHHHHHH-CCSCEEEESCCCSHHHHHHHH-----HTTCSEEEEEH------
T ss_pred HHHHCCCCEEEEECC----CCCCCCCHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHH-----HCCCHHHHHHH------
T ss_conf 997448846899757----66355668999999987-388722488344599998887-----60523899999------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHH
Q ss_conf 11277430013793899999998406544577998458998994689999999997598789996344568667876499
Q 005508 436 VVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWD 515 (693)
Q Consensus 436 v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~ 515 (693)
+++.+ .+.++++.. ..+++-+.|-+.. ..+ +.++.+.|+..|-|-.|.-...-+......
T Consensus 137 --------all~~--~l~~l~~~A-~~lgl~~LVEvh~-----~~E----l~~a~~~~a~iIGINnRdL~t~~vd~~~~~ 196 (254)
T d1vc4a_ 137 --------ALLGE--LTGAYLEEA-RRLGLEALVEVHT-----ERE----LEIALEAGAEVLGINNRDLATLHINLETAP 196 (254)
T ss_dssp --------HHHGG--GHHHHHHHH-HHHTCEEEEEECS-----HHH----HHHHHHHTCSEEEEESBCTTTCCBCTTHHH
T ss_pred --------HHHHH--HHHHHHHHH-HHHCCCEEEEECC-----HHH----HHHHHCCCCCEEEEECCCHHHHHCCHHHHH
T ss_conf --------99877--789999999-9839835887604-----988----746534898789995255466302468798
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 9999999829994499929878988799987139996789771787628970367874
Q 005508 516 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 516 ~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
-+..+....+.++.+|+.+||.+.+|+.. +. .|+|+|.||.++|..|..-..+++
T Consensus 197 ~l~~~i~~~~~~~i~IsESGI~~~~dv~~-l~--~g~davLIGesLm~~~d~~~~l~~ 251 (254)
T d1vc4a_ 197 RLGRLARKRGFGGVLVAESGYSRKEELKA-LE--GLFDAVLIGTSLMRAPDLEAALRE 251 (254)
T ss_dssp HHHHHHHHTTCCSEEEEESCCCSHHHHHT-TT--TTCSEEEECHHHHTSSCHHHHHHH
T ss_pred HHHHCCCCCCCCCEEEECCCCCCHHHHHH-HH--CCCCEEEECHHHCCCCCHHHHHHH
T ss_conf 86320112678988998469999999999-98--699999988364079999999998
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.21 E-value=0.07 Score=26.95 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=93.0
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCCCHHHH-----------HHHHCCCCCCEEEEEEC-C---CCHHHHHHH
Q ss_conf 89793999999999099989916510000002882344-----------53302679991999905-8---889999999
Q 005508 348 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEW-----------ALLRRHSSEDLFGVQIC-G---AYPDTLART 412 (693)
Q Consensus 348 t~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~e~-----------~ll~~h~~e~pigvQL~-G---~~pe~~a~A 412 (693)
.|.-|.+|-+++.+.|+|++...--+.. .++|..++. +.+++......+++-+- + .+++...+.
T Consensus 22 lTaYD~~~A~~~~~agiDiiLVGDSlgm-v~~G~~~T~~Vt~d~m~~H~~aV~rga~~~~iv~DmPf~s~~~s~~~a~~n 100 (262)
T d1oy0a_ 22 LTAYDYSTARIFDEAGIPVLLVGDSAAN-VVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAA 100 (262)
T ss_dssp EECCSHHHHHHHHTTTCCEEEECTTHHH-HTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHH
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCHHH-HHCCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCHHHHHHH
T ss_conf 9678999999998749989997474664-106887765642999988999987334131367421122013453889999
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCC---------C-----CC
Q ss_conf 999765189869998388997431127743001379389999999840654457799845899---------8-----99
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGY---------F-----EG 478 (693)
Q Consensus 413 Ae~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~---------~-----e~ 478 (693)
|.++..++|+|+|-|-.| . . ..++|+.+.+ .++||.--+.+-. . +.
T Consensus 101 A~r~~~~~ga~avkleg~------------~---~----~~~~I~~L~~-~gIPV~gHiGLtPQ~~~~~Gg~r~~Gk~~~ 160 (262)
T d1oy0a_ 101 ATRFLKDGGAHAVKLEGG------------E---R----VAEQIACLTA-AGIPVMAHIGFTPQSVNTLGGFRVQGRGDA 160 (262)
T ss_dssp HHHHHHTTCCSEEEEEBS------------G---G----GHHHHHHHHH-HTCCEEEEEECCC--------------CHH
T ss_pred HHHHHHCCCCCEEEECHH------------H---H----HHHHHHHHHH-CCCCEEEEEEECCEEEEECCCCCEECCCHH
T ss_conf 999986054301342113------------6---6----6999999986-699268763104032223376313121102
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 468999999999759878999634456866787649999999998299944999298
Q 005508 479 KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD 535 (693)
Q Consensus 479 ~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGd 535 (693)
......-+..|+++|+.+|.+-. .-.+...+|.+.+ +||+||-|.
T Consensus 161 ~~~l~~da~~le~AGa~~ivlE~----------Vp~~la~~It~~~--~IPtIGIGA 205 (262)
T d1oy0a_ 161 AEQTIADAIAVAEAGAFAVVMEM----------VPAELATQITGKL--TIPTVGIGA 205 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEES----------CCHHHHHHHHHHC--SSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEECCC----------CCHHHHHHHHHHC--CCEEEEECC
T ss_conf 66768999999868968985000----------6376789987407--714787415
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=95.17 E-value=0.055 Score=27.61 Aligned_cols=87 Identities=14% Similarity=0.034 Sum_probs=56.8
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCC--CCCCCCHH----HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999975987899963445686--67876499----999999982999449992987898879998713999678977
Q 005508 484 SLIADIGTWGASAVTVHGRTRQQR--YSKLADWD----YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 484 ~la~~L~e~GvdaItIHgRtr~qr--yt~~Adw~----~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMI 557 (693)
.....+...+...|.+-+...-+. -..+.+.+ .+..+++..+ ++||+.-|+|.+.+++..++. .|+|||.|
T Consensus 127 ~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~-~v~vlygGsV~~~n~~~~~~~--~g~dGvLV 203 (224)
T d1hg3a_ 127 AVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNP-EVKVLCGAGISTGEDVKKAIE--LGTVGVLL 203 (224)
T ss_dssp HHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCT-TSEEEEESSCCSHHHHHHHHH--TTCSEEEE
T ss_pred HHHHHHHHCCCCEEEECCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHH--CCCCEEEE
T ss_conf 888754201240688514676346667770356666665556553145-660698578698899999975--79989997
Q ss_pred CHHHHHCCCCHHHHHH
Q ss_conf 1787628970367874
Q 005508 558 ARGALIKPWIFTEIKE 573 (693)
Q Consensus 558 GRGaL~nPwiF~eIk~ 573 (693)
|.+.|.-+.....+++
T Consensus 204 GsAsl~a~d~~~~~~~ 219 (224)
T d1hg3a_ 204 ASGVTKAKDPEKAIWD 219 (224)
T ss_dssp SHHHHTCSSHHHHHHH
T ss_pred CCEEECCCCHHHHHHH
T ss_conf 2054348699999999
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.09 E-value=0.075 Score=26.73 Aligned_cols=78 Identities=17% Similarity=0.323 Sum_probs=35.4
Q ss_pred HHHHHHHHHCCCCEEEECCC----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 99999765189869998388----99743112774300137938999999984065445779984589989946899999
Q 005508 411 RTVELIDQQCTVDFIDINMG----CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLI 486 (693)
Q Consensus 411 ~AAe~l~~~aG~D~IDLN~G----CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la 486 (693)
++|+.+. .+|+|+|=+-.| |....+. |.|- -...-+.++..+. ...++||..- -|. .+.-.++
T Consensus 160 e~a~~L~-~aGaD~VkVGiG~Gs~CTTr~~t--GvGv---Pq~sai~~~~~~~-~~~~~~iIAD--GGi----~~~GDi~ 226 (365)
T d1zfja1 160 EGARALY-DAGVDVVKVGIGPGSICTTRVVA--GVGV---PQVTAIYDAAAVA-REYGKTIIAD--GGI----KYSGDIV 226 (365)
T ss_dssp HHHHHHH-HTTCSEEEECSSCCTTBCHHHHT--CCCC---CHHHHHHHHHHHH-HHTTCEEEEE--SCC----CSHHHHH
T ss_pred HHHHHHH-HCCCCEEEEEECCCCCCCCCCEE--EEEC---CCHHHHHHHHHHH-HHCCCEEEEC--CCC----CCCHHHH
T ss_conf 9999998-66976378640256445676301--3422---4213899999999-7579569805--884----7620666
Q ss_pred HHHHHCCCCEEEEECC
Q ss_conf 9999759878999634
Q 005508 487 ADIGTWGASAVTVHGR 502 (693)
Q Consensus 487 ~~L~e~GvdaItIHgR 502 (693)
+.| .+|+|+|.+-+.
T Consensus 227 KAl-a~GAd~VMlG~~ 241 (365)
T d1zfja1 227 KAL-AAGGNAVMLGSM 241 (365)
T ss_dssp HHH-HTTCSEEEESTT
T ss_pred HHH-HCCCCEEEECCH
T ss_conf 553-215878986422
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=95.02 E-value=0.079 Score=26.59 Aligned_cols=123 Identities=11% Similarity=0.052 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCHHHHHH
Q ss_conf 999999999765189869998388997431127743001379389999999840654--457799845899899468999
Q 005508 407 DTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNRIDS 484 (693)
Q Consensus 407 e~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR~G~~e~~~~a~~ 484 (693)
+.+++-++.+. ..||..+-|.+|- ..++.-.+.|+++++++ ++++.|..-.+| +..++.+
T Consensus 23 ~~~~~~~~~~~-~~Gf~~~Kikvg~---------------~~~~~di~~v~avr~~~G~~~~l~vDan~~~--~~~~A~~ 84 (256)
T d2gdqa1 23 SRSVSNVEAQL-KKGFEQIKVKIGG---------------TSFKEDVRHINALQHTAGSSITMILDANQSY--DAAAAFK 84 (256)
T ss_dssp HHHHHHHHHHH-TTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHCTTSEEEEECTTCC--CHHHHHT
T ss_pred HHHHHHHHHHH-HCCCCEEEEECCC---------------CCHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CHHHHHH
T ss_conf 99999999999-8799989997999---------------9999999999999997398728862455577--7788999
Q ss_pred HHHHHHHC-CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99999975-987899963445686678764999999999829994499929878988799987139996789771
Q 005508 485 LIADIGTW-GASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 485 la~~L~e~-GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIG 558 (693)
+++.|.+. ++.++ +|-. .+-|+.-.+++++.. ++||.+.-.+++.+++.++++. ..+|.|++-
T Consensus 85 ~~~~l~~~~~i~~~-------EeP~-~~~d~~~~~~l~~~~--~ipIa~gE~~~~~~~~~~~i~~-~a~di~~~d 148 (256)
T d2gdqa1 85 WERYFSEWTNIGWL-------EEPL-PFDQPQDYAMLRSRL--SVPVAGGENMKGPAQYVPLLSQ-RCLDIIQPD 148 (256)
T ss_dssp THHHHTTCSCEEEE-------ECCS-CSSCHHHHHHHHTTC--SSCEEECTTCCSHHHHHHHHHT-TCCSEECCC
T ss_pred HHHHHHHCCCEEEE-------CCCC-CCCHHHHHHHHHHCC--CCEEECCCCCCCHHHHHHHHHH-HCCEEEECC
T ss_conf 99998625852575-------2651-100688888776313--1113357643213668989875-234156014
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=94.99 E-value=0.081 Score=26.53 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=93.9
Q ss_pred EEEEEEC-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECC
Q ss_conf 1999905-8889999999999765189869998388997431127743001379389999999840654-4577998458
Q 005508 396 LFGVQIC-GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRT 473 (693)
Q Consensus 396 pigvQL~-G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~ 473 (693)
++.+.+. ..+++.+.+.++.+. ..||..+-|..|-- .+ .+.++++++.+ ++.+.+-.-.
T Consensus 6 ~~~~s~g~~~~~e~~~~~~~~~~-~~Gf~~~Kikvg~~--------------~D----~~~v~~ir~~~~~~~l~vDaN~ 66 (244)
T d1wufa1 6 KVGVSIGLQQNVETLLQLVNQYV-DQGYERVKLKIAPN--------------KD----IQFVEAVRKSFPKLSLMADANS 66 (244)
T ss_dssp EBCEEECCCSCHHHHHHHHHHHH-HHTCCEEEEECBTT--------------BS----HHHHHHHHTTCTTSEEEEECTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHH-HCCCCEEEEEECCC--------------HH----HHHHHHHHHHCCCHHHHHHHHC
T ss_conf 87379478899999999999999-77998799993771--------------79----9999999985541433201003
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 99899468999999999759878999634456866787649999999998299944999298789887999871399967
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 474 G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaD 553 (693)
+|+ ..++. +++.+.+.++.+| +|-. .+-|++-.+++++.. ++||++...++++.++.+++.. ..+|
T Consensus 67 ~~~--~~~a~-~~~~l~~~~~~wi-------EeP~-~~~d~~~~~~l~~~~--~~pia~dE~~~~~~~~~~~i~~-~a~d 132 (244)
T d1wufa1 67 AYN--REDFL-LLKELDQYDLEMI-------EQPF-GTKDFVDHAWLQKQL--KTRICLDENIRSVKDVEQAHSI-GSCR 132 (244)
T ss_dssp CCC--GGGHH-HHHTTGGGTCSEE-------ECCS-CSSCSHHHHHHHTTC--SSEEEECTTCCSHHHHHHHHHH-TCCS
T ss_pred CCC--CHHHH-HHHCCCCCCHHHH-------CCCC-CCCCHHHHHCCCCCC--CCCCCCCCCCCCHHHHHHHCCC-CCCC
T ss_conf 454--11234-3201010002445-------0752-322313431243210--0110257632100234542012-1155
Q ss_pred EEEEC
Q ss_conf 89771
Q 005508 554 SCMIA 558 (693)
Q Consensus 554 gVMIG 558 (693)
.+++-
T Consensus 133 ~v~~d 137 (244)
T d1wufa1 133 AINLK 137 (244)
T ss_dssp EEEEC
T ss_pred EEECC
T ss_conf 01002
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=94.95 E-value=0.083 Score=26.46 Aligned_cols=172 Identities=12% Similarity=0.053 Sum_probs=111.7
Q ss_pred CCCCEE--EECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf 099989--916510000002882344533026799919999058889999999999765189869998388997431127
Q 005508 362 LGADVT--CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNK 439 (693)
Q Consensus 362 ~Gadl~--~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~ 439 (693)
.||..+ .|| .....|.......++.. ..-|+.-.=|=-+|.+..+|. .+|+|+|=|-..+
T Consensus 72 ~GA~aiSVLTd----~~~F~Gs~~~l~~vr~~-~~~PiLrKDFIid~~QI~ea~-----~~GADaiLLI~~~-------- 133 (251)
T d1i4na_ 72 ELADAISILTE----KHYFKGDPAFVRAARNL-TCRPILAKDFYIDTVQVKLAS-----SVGADAILIIARI-------- 133 (251)
T ss_dssp HHCSEEEEECC----CSSSCCCTHHHHHHHTT-CCSCEEEECCCCSTHHHHHHH-----HTTCSEEEEEGGG--------
T ss_pred CCCCCEEEECC----CCCCCCCHHHHHHHHHC-CCCCHHHHHHHHCHHHHHHHH-----HHCCCEEEEECCC--------
T ss_conf 08762699514----47789978899987401-357403421552779998887-----6135557753311--------
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 74300137938999999984065445779984589989946899999999975987899963445686678764999999
Q 005508 440 GAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQ 519 (693)
Q Consensus 440 G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~ 519 (693)
+ ..+.+.++++... ..++-+.|-+.. ..++-+.+...|+..|-|-.|.-. +-..|.+...+
T Consensus 134 ------L-~~~~l~~l~~~a~-~lgle~LvEvh~--------~~El~~al~~~~a~iiGINnRdL~---t~~vd~~~~~~ 194 (251)
T d1i4na_ 134 ------L-TAEQIKEIYEAAE-ELGMDSLVEVHS--------REDLEKVFSVIRPKIIGINTRDLD---TFEIKKNVLWE 194 (251)
T ss_dssp ------S-CHHHHHHHHHHHH-TTTCEEEEEECS--------HHHHHHHHTTCCCSEEEEECBCTT---TCCBCTTHHHH
T ss_pred ------C-CHHHHHHHHHHHH-HHCCEEECCCCC--------HHHHHHHHCCCCCCEEEEEECCHH---CCCHHHHHHHH
T ss_conf ------6-4999999999999-829740024698--------999998861355513345402221---02014568999
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 999829994499929878988799987139996789771787628970367874
Q 005508 520 CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 520 i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
+....|.++.+|+-+||.+++|+.. +. .|+|+|.||.+++..+..-..+++
T Consensus 195 L~~~ip~~~~~IaESGI~~~~d~~~-l~--~G~davLIG~sLm~~~~p~~~l~~ 245 (251)
T d1i4na_ 195 LLPLVPDDTVVVAESGIKDPRELKD-LR--GKVNAVLVGTSIMKAENPRRFLEE 245 (251)
T ss_dssp HGGGSCTTSEEEEESCCCCGGGHHH-HT--TTCSEEEECHHHHHCSSHHHHHHH
T ss_pred HHHHCCCCCEEEECCCCCCHHHHHH-HH--HCCCEEEECHHHHCCCCHHHHHHH
T ss_conf 8840789997998279999999999-98--289999988687489999999999
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=94.88 E-value=0.086 Score=26.34 Aligned_cols=130 Identities=15% Similarity=0.025 Sum_probs=94.3
Q ss_pred EEEEEEC-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEEC
Q ss_conf 1999905-8889999999999765189869998388997431127743001379389999999840654--457799845
Q 005508 396 LFGVQIC-GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVR 472 (693)
Q Consensus 396 pigvQL~-G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR 472 (693)
|+-+.+. +.+|+.+.+.++... ..||..+=|..| | ..+. +.++++++++ ++.+.+..-
T Consensus 6 pvy~s~g~~~~~~~~~~~~~~~~-~~Gf~~~Kikvg-~-------------~~Di----~~i~~ir~~~g~~~~l~vDaN 66 (242)
T d1sjda1 6 PCGVSVGIMDTIPQLLDVVGGYL-DEGYVRIKLKIE-P-------------GWDV----EPVRAVRERFGDDVLLQVDAN 66 (242)
T ss_dssp EBEEEECCCSCHHHHHHHHHHHH-HHTCSEEEEECB-T-------------TBSH----HHHHHHHHHHCTTSEEEEECT
T ss_pred EEEEEECCCCCHHHHHHHHHHHH-HCCCCEEEEECC-C-------------HHHH----HHHHHHHHHHCCCEEEEECCC
T ss_conf 84489579899999999999999-869998999779-5-------------2689----999999987089813742232
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 89989946899999999975987899963445686678764999999999829994499929878988799987139996
Q 005508 473 TGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPEL 552 (693)
Q Consensus 473 ~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~ga 552 (693)
.+|+ ..++.++++ |++.++.+|- |-. .+.||...+++++.. ++||.+.-.+++..++.++++. ..+
T Consensus 67 ~~~~--~~~a~~~~~-l~~~~~~~iE-------eP~-~~~d~~~~~~l~~~~--~~pia~gE~~~~~~~~~~~~~~-~~~ 132 (242)
T d1sjda1 67 TAYT--LGDAPQLAR-LDPFGLLLIE-------QPL-EEEDVLGHAELARRI--QTPICLDESIVSARAAADAIKL-GAV 132 (242)
T ss_dssp TCCC--GGGHHHHHT-TGGGCCSEEE-------CCS-CTTCHHHHHHHHTTC--SSCEEESTTCCSHHHHHHHHHT-TCC
T ss_pred CCCC--HHHHHHHHH-HHHHHHHHHH-------HHH-HHHHHHHHHHHHHCC--CCCCCCCCCCCCCHHHHHHHHC-CCC
T ss_conf 1222--025667766-4012168887-------666-555479999997605--7553235234562145545204-766
Q ss_pred CEEEEC
Q ss_conf 789771
Q 005508 553 ASCMIA 558 (693)
Q Consensus 553 DgVMIG 558 (693)
|.+++-
T Consensus 133 d~~~~d 138 (242)
T d1sjda1 133 QIVNIK 138 (242)
T ss_dssp SEEEEC
T ss_pred CEEEEC
T ss_conf 789961
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.85 E-value=0.088 Score=26.30 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=91.2
Q ss_pred EEEEEEC-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECC
Q ss_conf 1999905-8889999999999765189869998388997431127743001379389999999840654-4577998458
Q 005508 396 LFGVQIC-GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRT 473 (693)
Q Consensus 396 pigvQL~-G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~ 473 (693)
++...+. ..+++.+.+.++.+. ..||+.+-|-.| | + .+. +.|+++++++ ++.+.|..-.
T Consensus 6 ~~y~s~g~~~~~e~~~~~~~~~~-~~G~~~~KiKvg-~---------~----~D~----~~v~~ir~~~~d~~l~vD~n~ 66 (243)
T d1r0ma1 6 EVGVSLGIQADEQATVDLVRRHV-EQGYRRIKLKIK-P---------G----WDV----QPVRATREAFPDIRLTVDANS 66 (243)
T ss_dssp EBCEEECCCSSHHHHHHHHHHHH-HTTCSCEEEECB-T---------T----BSH----HHHHHHHHHCTTSCEEEECTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHH-HCCCCEEEEECC-C---------C----HHH----HHHHHHHHHCCCCEEEEECCC
T ss_conf 85358388899999999999999-869998999758-6---------2----269----999999974569649872544
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 99899468999999999759878999634456866787649999999998299944999298789887999871399967
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 474 G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaD 553 (693)
+|+- .++..+ ..|.+.++.+|- |-. .+.+|+...++++.. ++||.+.-.+++..++.++++. ..+|
T Consensus 67 ~~~~--~~a~~~-~~l~~~~~~~iE-------eP~-~~~d~~~~~~l~~~~--~ipia~gE~~~~~~~~~~~i~~-~~~d 132 (243)
T d1r0ma1 67 AYTL--ADAGRL-RQLDEYDLTYIE-------QPL-AWDDLVDHAELARRI--RTPLCLDESVASASDARKALAL-GAGG 132 (243)
T ss_dssp CCCG--GGHHHH-HTTGGGCCSCEE-------CCS-CTTCSHHHHHHHHHC--SSCEEESTTCCSHHHHHHHHHH-TSCS
T ss_pred CCCH--HHHHHH-HHHHHCCCHHHH-------HHC-CCCCHHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHHHC-CCCC
T ss_conf 5765--777776-543212304454-------420-112447788873057--7540124201244566666650-5554
Q ss_pred EEEEC
Q ss_conf 89771
Q 005508 554 SCMIA 558 (693)
Q Consensus 554 gVMIG 558 (693)
.|++-
T Consensus 133 ~v~~d 137 (243)
T d1r0ma1 133 VINLK 137 (243)
T ss_dssp EEEEC
T ss_pred CEECC
T ss_conf 20004
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=94.81 E-value=0.09 Score=26.23 Aligned_cols=187 Identities=10% Similarity=-0.030 Sum_probs=104.9
Q ss_pred HHHHHHHHH---CCCCEEEECCCCCCHHCCCCHHHHHHH----HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999999999---099989916510000002882344533----0267999199990588899999999997651898699
Q 005508 353 LPFRRVCKV---LGADVTCGEMAMCTNLLQGQASEWALL----RRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFI 425 (693)
Q Consensus 353 lpFRrl~~~---~Gadl~~TEMv~a~~L~~g~~~e~~ll----~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~I 425 (693)
-.++++.+. .|++-++.-........-.......++ .......++++++.+.+..+..+.|+.+. ++|+|+|
T Consensus 24 ~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~-~~Gad~i 102 (292)
T d1xkya1 24 AKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKAT-EVGVDAV 102 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHH-HTTCSEE
T ss_pred HHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH-HCCCCEE
T ss_conf 999999999997799989977586516669899999999999998189851999357421999999999999-8499999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE---CCCCCCCHHHHHHHHHHHHH-CCCCEEEEEC
Q ss_conf 9838899743112774300137938999999984065445779984---58998994689999999997-5987899963
Q 005508 426 DINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV---RTGYFEGKNRIDSLIADIGT-WGASAVTVHG 501 (693)
Q Consensus 426 DLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKi---R~G~~e~~~~a~~la~~L~e-~GvdaItIHg 501 (693)
-+ ..|.... -..+-+.+-.+.+.+++++|+.+-- +.|..-.. +++.++.+ .++.+|-
T Consensus 103 lv--~pP~~~~----------~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~----~~~~~l~~~p~v~giK--- 163 (292)
T d1xkya1 103 ML--VAPYYNK----------PSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISV----DTVVRLSEIENIVAIK--- 163 (292)
T ss_dssp EE--ECCCSSC----------CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCH----HHHHHHHTSTTEEEEE---
T ss_pred EE--CCCCCCC----------CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCH----HHHHHHCCCCCEEEEE---
T ss_conf 97--8987889----------899999999999843689868998478645775698----9976540389989872---
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 445686678764999999999829994499929878988799987139996789771787628970367874
Q 005508 502 RTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 502 Rtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
++ ..+..+...+.+.......|++-+|- .+...+. .|++|++.|-+.+. |.++.++.+
T Consensus 164 ------~~-~~~~~~~~~~~~~~~~~~~v~~G~~~----~~~~~~~--~G~~G~~~~~~n~~-p~~~~~l~~ 221 (292)
T d1xkya1 164 ------DA-GGDVLTMTEIIEKTADDFAVYSGDDG----LTLPAMA--VGAKGIVSVASHVI-GNEMQEMIA 221 (292)
T ss_dssp ------EC-SSCHHHHHHHHHHSCTTCEEEESSGG----GHHHHHH--TTCCEEEESTHHHH-HHHHHHHHH
T ss_pred ------CC-CCCHHHHHEEEEECCCCCEEEECCCC----CCCHHHH--CCCCCCCCCHHHHH-HHHHHHHHH
T ss_conf ------25-42012222012104788879979765----6432987--59974005514677-999999887
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.09 Score=26.21 Aligned_cols=127 Identities=11% Similarity=0.038 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCHHH
Q ss_conf 8889999999999765189869998388997431127743001379389999999840654-457799845899899468
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 403 G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G~~e~~~~ 481 (693)
+.+|+.+++-|+.+.++.||..+-|..|- ..++.-.+.|+++++++ +..|.|-.-.+|. ..+
T Consensus 45 ~~~p~~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avr~~~pd~~l~vDaN~~~s--~~~ 107 (309)
T d1jdfa1 45 AMTPDAVVRLAEAAYEKYGFNDFKLKGGV---------------LAGEEEAESIVALAQRFPQARITLDPNGAWS--LNE 107 (309)
T ss_dssp BCSHHHHHHHHHHHHHHHCCSCEEEECSS---------------SCHHHHHHHHHHHHHHCTTSCEEEECTTBBC--HHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCC---------------CCHHHHHHHHHHHHHHCCCCEEEEECCCCCC--HHH
T ss_conf 49999999999999984498769997798---------------9979999999999997799869751638979--999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCC---CCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 9999999997598789996344568667---876499999999982999449992987898879998713999678977
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRYS---KLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 482 a~~la~~L~e~GvdaItIHgRtr~qryt---~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMI 557 (693)
+..+++.|+ .++.++- |-.. .....+..+++++.. ++||.+.-.+++..++.++++. ..+|.++.
T Consensus 108 Ai~~~~~le-~~l~w~E-------EPv~~~d~~~~~~~l~~lr~~~--~ipIa~gE~~~~~~~~~~~i~~-~a~di~~~ 175 (309)
T d1jdfa1 108 AIKIGKYLK-GSLAYAE-------DPCGAEQGFSGREVMAEFRRAT--GLPTATNMIATDWRQMGHTLSL-QSVDIPLA 175 (309)
T ss_dssp HHHHHHHTT-TTCSCEE-------SCBCCBTTBCHHHHHHHHHHHH--CCCEEESSSSSSHHHHHHHHHH-TCCSEEBC
T ss_pred HHHHHHHHH-HCCHHHH-------HHCCCCCCHHHHHHHHHHHCCC--CCCEECCCCCCHHHHHHHHHHH-CCCEEEEC
T ss_conf 999999976-2635334-------3036674246678888763043--4656347553004222245542-13125632
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=94.78 E-value=0.091 Score=26.19 Aligned_cols=49 Identities=22% Similarity=0.393 Sum_probs=20.3
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99999984065445779984589989946899999999975987899963
Q 005508 452 MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHG 501 (693)
Q Consensus 452 l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHg 501 (693)
+.+.++.|..++++||+|.+-.|+ .+..++...++.+.++|+.+|+|-.
T Consensus 64 ~~~~~~~I~~~~~lPv~~D~d~Gy-G~~~~v~~tv~~~~~aGaagi~iED 112 (275)
T d1s2wa_ 64 VVEVLEFMSDASDVPILLDADTGY-GNFNNARRLVRKLEDRGVAGACLED 112 (275)
T ss_dssp HHHHHHHHHHTCSSCEEEECCSSC-SSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEEECCCCC-CCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 899998663036775157316564-5402799999999972043457512
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.098 Score=25.99 Aligned_cols=161 Identities=11% Similarity=0.110 Sum_probs=109.2
Q ss_pred HHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 00028823445330267999199990588899999999997651898699983889974311277430013793899999
Q 005508 376 NLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455 (693)
Q Consensus 376 ~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eI 455 (693)
....|.......++.+ ..-|+--.=|=-++.+..+|. .+|+|+|=|-.++- .+..+.++
T Consensus 91 ~~F~Gs~~~l~~v~~~-~~~PiLrKDFIid~~QI~ear-----~~GADavLLI~~~L---------------~~~~l~~l 149 (254)
T d1piia2 91 KYFQGSFNFLPIVSQI-APQPILCKDFIIDPYQIYLAR-----YYQADACLLMLSVL---------------DDDQYRQL 149 (254)
T ss_dssp TTTCCCTTHHHHHHHH-CCSCEEEESCCCSHHHHHHHH-----HTTCSEEEEETTTC---------------CHHHHHHH
T ss_pred CCCCCCHHHHHHHHHC-CCCCCCHHCCCCCHHHHHHHH-----HHCCCHHHHHHHHH---------------CCCHHHHH
T ss_conf 6678889999888723-665410120007699998987-----50321433448651---------------41077899
Q ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99840654457799845899899468999999999759878999634456866787649999999998299944999298
Q 005508 456 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGD 535 (693)
Q Consensus 456 ikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGd 535 (693)
++... ..+.-+-|-+.. . .+ +.++.+.|+..|-|-.|.-.. -..|.+...++....|.++.+|+-+|
T Consensus 150 ~~~a~-~lgl~~LVEvh~-----~---~E-l~~a~~~~a~iIGINnRnL~t---f~vd~~~t~~L~~~ip~~~~~VsESG 216 (254)
T d1piia2 150 AAVAH-SLEMGVLTEVSN-----E---EE-QERAIALGAKVVGINNRDLRD---LSIDLNRTRELAPKLGHNVTVISESG 216 (254)
T ss_dssp HHHHH-HTTCEEEEEECS-----H---HH-HHHHHHTTCSEEEEESEETTT---TEECTHHHHHHHHHHCTTSEEEEESC
T ss_pred HHHHH-HHHHHHHHHHCC-----H---HH-HHHHHHHCCCCCCCCCCCHHH---HHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99999-985367886414-----9---99-978875141216765525323---12204799999975899988998179
Q ss_pred CCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 78988799987139996789771787628970367874
Q 005508 536 IYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 536 I~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
|.+++|+.. +. .|+|+|.||.+++..|..-..+++
T Consensus 217 I~~~~d~~~-l~--~g~davLiGeslm~~~dp~~~l~~ 251 (254)
T d1piia2 217 INTYAQVRE-LS--HFANGFLIGSALMAHDDLHAAVRR 251 (254)
T ss_dssp CCCHHHHHH-HT--TTCSEEEECHHHHTCSCHHHHHHH
T ss_pred CCCHHHHHH-HH--CCCCEEEECHHHHCCCCHHHHHHH
T ss_conf 999999999-98--489999989687679999999999
|
| >d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: CCCH zinc finger superfamily: CCCH zinc finger family: CCCH zinc finger domain: Butyrate response factor 2 (Tis11D) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0023 Score=36.73 Aligned_cols=29 Identities=31% Similarity=0.661 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998899885762236999985334676
Q 005508 136 PDDLEGECPFLSSEGPCPYGLACRFSGTH 164 (693)
Q Consensus 136 ~~di~~~Cp~f~~~G~Cp~G~~CrF~~sH 164 (693)
|.--+..|..|...|.||||.+|+|+.+-
T Consensus 4 pkyKT~lC~~f~~~g~C~yG~~C~FaHg~ 32 (34)
T d1rgoa2 4 PKYKTELCRTFHTIGFCPYGPRCHFIHNA 32 (34)
T ss_dssp TTTTCSBCHHHHHHSCCTTGGGCSSBCCS
T ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97314006164787707989954176888
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=94.63 E-value=0.099 Score=25.94 Aligned_cols=131 Identities=9% Similarity=0.016 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHCCCC-CCCEEEEECCCCCCCH
Q ss_conf 8899999999997651898699983889974311277430013793899999---99840654-4577998458998994
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI---IEATSGTV-DKPITIKVRTGYFEGK 479 (693)
Q Consensus 404 ~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eI---ikai~~~v-~iPVTVKiR~G~~e~~ 479 (693)
...+.-..-++.+. ..|+|.||+=+ .+|.-+-.+.+.+.+. +..++.+. +.++-|-+-++.-.+
T Consensus 82 ~~~~~K~~Ea~~Ai-~~GAdEID~Vi----------n~~~l~~g~~~~v~e~~~~i~~~~~~~~~~~lKVIlEt~~L~~- 149 (256)
T d2a4aa1 82 DSMEKVLNDTEKAL-DDGADEIDLVI----------NYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKT- 149 (256)
T ss_dssp SCHHHHHHHHHHHH-HHTCSEEEEEC----------CHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCS-
T ss_pred CHHHHHHHHHHHHH-HCCCCEEEEEC----------CHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCC-
T ss_conf 64889999999999-81997589832----------5999852768899999999999986246870676541021270-
Q ss_pred HHHHHHHH-HHHHCCCCEEE-EECCCCCCCCCCCCCHHHHHHHHHHC----------CCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 68999999-99975987899-96344568667876499999999982----------99944999298789887999871
Q 005508 480 NRIDSLIA-DIGTWGASAVT-VHGRTRQQRYSKLADWDYIYQCARKA----------SDDLQVLGNGDIYSYLDWNKHKS 547 (693)
Q Consensus 480 ~~a~~la~-~L~e~GvdaIt-IHgRtr~qryt~~Adw~~I~~i~~~~----------~~~IPVIgNGdI~S~eDa~~~l~ 547 (693)
++....+. ...++|+|+|- -+|. +.+.+..+-+..+++.+ ...+.|=+.|||.|++++.+++.
T Consensus 150 ~e~i~~~~~~~~~aGadFVKTSTG~-----~~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~ 224 (256)
T d2a4aa1 150 EDLIIKTTLAVLNGNADFIKTSTGK-----VQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYIL 224 (256)
T ss_dssp HHHHHHHHHHHHTTTCSEEECCCSC-----SSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHCCCC-----CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 8999999899985023898845677-----88899879999999999999862124588456881378798999999999
Q ss_pred CCCCCC
Q ss_conf 399967
Q 005508 548 DCPELA 553 (693)
Q Consensus 548 ~~~gaD 553 (693)
. |++
T Consensus 225 ~--g~~ 228 (256)
T d2a4aa1 225 L--ARR 228 (256)
T ss_dssp H--HHH
T ss_pred H--HHH
T ss_conf 9--987
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=94.19 E-value=0.12 Score=25.32 Aligned_cols=230 Identities=10% Similarity=-0.029 Sum_probs=113.8
Q ss_pred HHHHHHHHH---CCCC-EEEECCCCCCHHCCCCHHHHH-H----HHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999---0999-899165100000028823445-3----302679991999905888999999999976518986
Q 005508 353 LPFRRVCKV---LGAD-VTCGEMAMCTNLLQGQASEWA-L----LRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVD 423 (693)
Q Consensus 353 lpFRrl~~~---~Gad-l~~TEMv~a~~L~~g~~~e~~-l----l~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D 423 (693)
..+|+++.. .|++ +++.... ..... -...|.. + ........|+++++.+.+..+..+.|+.+. ++|+|
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~v~Gst-GE~~~-Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~-~~Gad 98 (295)
T d1o5ka_ 22 ESYERLVRYQLENGVNALIVLGTT-GESPT-VNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAE-KLGAN 98 (295)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGG-GTGGG-CCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHH-HHTCS
T ss_pred HHHHHHHHHHHHCCCCEEEECEEC-CCHHH-CCHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHH-HCCCC
T ss_conf 999999999997699999979015-34545-8999999986541002356786686156545999999999999-75999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC---CCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99983889974311277430013793899999998406544577998458---998994689999999997598789996
Q 005508 424 FIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT---GYFEGKNRIDSLIADIGTWGASAVTVH 500 (693)
Q Consensus 424 ~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~---G~~e~~~~a~~la~~L~e~GvdaItIH 500 (693)
+|-+ ..|.... -..+-+.+-.+.+.+++++|+.+--.. |..-..+ .+.+.+.+.+ ..+-+.
T Consensus 99 ~v~v--~pP~y~~----------~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~---~~~~l~~~~~-ni~~iK 162 (295)
T d1o5ka_ 99 GVLV--VTPYYNK----------PTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPE---TAARIAADLK-NVVGIK 162 (295)
T ss_dssp EEEE--ECCCSSC----------CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHH---HHHHHHHHCT-TEEEEE
T ss_pred EEEE--ECCCCCC----------CCHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCHHH---HHHHHHHHCC-CCCCEE
T ss_conf 9998--0898999----------8999999999999853699706875631110230268---9999886124-655323
Q ss_pred CCCCCCCCCCCCCHHHHHH----HHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHC-C
Q ss_conf 3445686678764999999----9998299944999298789887999871399967897717876289703678740-6
Q 005508 501 GRTRQQRYSKLADWDYIYQ----CARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ-R 575 (693)
Q Consensus 501 gRtr~qryt~~Adw~~I~~----i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~-~ 575 (693)
. ...+...... .....+ ...+.+..+.. +...+. .|++|++.|-+.+ -|.++.++-+. .
T Consensus 163 ~--------~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~~----~~~~~~--~Ga~G~i~~~~n~-~p~~~~~~~~~~~ 226 (295)
T d1o5ka_ 163 E--------ANPDIDQIDRTVSLTKQARS-DFMVWSGNDDR----TFYLLC--AGGDGVISVVSNV-APKQMVELCAEYF 226 (295)
T ss_dssp E--------CCCCHHHHHHHHHHHHHHCT-TCEEEESSGGG----HHHHHH--HTCCEEEESGGGT-CHHHHHHHHHHHH
T ss_pred C--------CCCCHHHHHHHHHHHHHCCC-CCEECCCCCCC----HHHHHH--CCCCCCCCCCCCC-CCCHHHHHHHHHH
T ss_conf 1--------78623334467777640588-62230443210----123441--5998524543442-1000037889988
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999978999999999999998615972137999999999999765007886
Q 005508 576 HWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVG 627 (693)
Q Consensus 576 ~~d~s~~Erl~il~~~~~~~le~~gsd~~gv~~~Rrfl~ewls~~~ryiP~g 627 (693)
.-+ ..+-.++..++..+. +.+.. ..+...+ |.. |. .++++.|
T Consensus 227 ~g~--~~~a~~l~~~l~~l~-~~~~~-~~~~~~~-K~~---l~--~~G~~~g 268 (295)
T d1o5ka_ 227 SGN--LEKSREVHRKLRPLM-KALFV-ETNPIPV-KAA---LN--LMGFIEN 268 (295)
T ss_dssp TTC--HHHHHHHHHHHHHHH-HHTTS-SSTTHHH-HHH---HH--HTTSSCC
T ss_pred CCC--CHHHHHHHHHHHHHH-HHHHC-CCCHHHH-HHH---HH--HCCCCCC
T ss_conf 388--368999999999999-99971-5878999-999---99--7599999
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.14 E-value=0.11 Score=25.53 Aligned_cols=56 Identities=9% Similarity=0.227 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 889999999999765189869998388997431127743001379389999999840654457799845
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 404 ~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR 472 (693)
.+.+...+-|+... ++|+|.||||+|-|. ....+.+..+++.+...+++|+++...
T Consensus 37 ~d~d~~~~~A~~qv-~~GA~iLDIn~~~~~------------~~e~~~m~~li~~l~~~~d~PlsIDT~ 92 (260)
T d3bofa1 37 GNEEIVIKEAKTQV-EKGAEVLDVNFGIES------------QIDVRYVEKIVQTLPYVSNVPLSLDIQ 92 (260)
T ss_dssp TCSHHHHHHHHHHH-HTTCSEEEEECSSGG------------GSCHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEECCCCH------------HHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 89899999999999-859988986248750------------555899999999988417998412689
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=94.05 E-value=0.13 Score=25.14 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 88899999999997651898699983889974311277430013793899999998406544577998458
Q 005508 403 GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 473 (693)
Q Consensus 403 G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~ 473 (693)
..+++...+-|+... +.|+|.||||. |.......+.+..++..+.+.+++|++|..+.
T Consensus 21 ~~d~~~~~~~A~~m~-~~GAdiIDIg~------------g~~~~~e~e~~~~vi~~l~~~~~vpiSIDT~~ 78 (262)
T d1f6ya_ 21 ERDPAPVQEWARRQE-EGGARALDLNV------------GPAVQDKVSAMEWLVEVTQEVSNLTLCLDSTN 78 (262)
T ss_dssp HTCHHHHHHHHHHHH-HHTCSEEEEBC------------C----CHHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEECC------------CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 689999999999999-87999899599------------98887999999999998888626885356886
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=93.99 E-value=0.13 Score=25.07 Aligned_cols=170 Identities=8% Similarity=0.097 Sum_probs=100.6
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCC-C-CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 679991999905888999999999976518986999838899-7-43112774300137938999999984065445779
Q 005508 391 HSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCP-I-DIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT 468 (693)
Q Consensus 391 h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP-~-~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVT 468 (693)
|..+.++.+ ....++- .|++++ .+||+.|=+-..+- . ..-.-|+ .+ -....+.+.++.|..++++||+
T Consensus 12 l~~~~~~~~-~~~~D~~----sA~~~e-~~Gf~a~~~sg~~~sa~~~G~pD~---~~-~~~~e~~~~~~~i~~a~~~Pvi 81 (289)
T d1muma_ 12 LTKENPLQI-VGTINAN----HALLAQ-RAGYQAIYLSGGGVAAGSLGLPDL---GI-STLDDVLTDIRRITDVCSLPLL 81 (289)
T ss_dssp HHHCSSEEE-EECSSHH----HHHHHH-HTTCSCEEECHHHHHHTTSCCCSS---SC-CCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHCCCCEEE-ECCCCHH----HHHHHH-HCCCCEEEHHHHHHHHHCCCCCCC---CC-CCHHHHHHHHHHHHCCCCCCEE
T ss_conf 817998896-0688889----999999-839999970289999776699988---87-8768999999988603578846
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC---CCCCCCCC---CHHHHHHHHHHC---C-CCCEEEEECCCCC
Q ss_conf 984589989946899999999975987899963445---68667876---499999999982---9-9944999298789
Q 005508 469 IKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR---QQRYSKLA---DWDYIYQCARKA---S-DDLQVLGNGDIYS 538 (693)
Q Consensus 469 VKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr---~qryt~~A---dw~~I~~i~~~~---~-~~IPVIgNGdI~S 538 (693)
|..-.|+-....++...++.+..+|+.+|+|-..+. ...+.+.. --+++.+++... . .++-||+--|.+.
T Consensus 82 ~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~ 161 (289)
T d1muma_ 82 VDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALA 161 (289)
T ss_dssp EECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHH
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCHHHEECCCCCC
T ss_conf 65222234312389999999997799789865863665556666532106998878999999716996242112336632
Q ss_pred HHHHHHHHH------CCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 887999871------39996789771787628970367874
Q 005508 539 YLDWNKHKS------DCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 539 ~eDa~~~l~------~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
...+.+++. + .|+|+|++- .+..+..+.++.+
T Consensus 162 ~~g~~eAi~R~~aY~e-AGAD~vf~~--~~~~~~~~~~~~~ 199 (289)
T d1muma_ 162 VEGLDAAIERAQAYVE-AGAEMLFPE--AITELAMYRQFAD 199 (289)
T ss_dssp HHCHHHHHHHHHHHHH-TTCSEEEET--TCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-CCCCEEEEC--CCCCHHHHHHHHH
T ss_conf 0479999999997664-599589845--8899999999987
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.88 E-value=0.14 Score=24.94 Aligned_cols=182 Identities=14% Similarity=0.111 Sum_probs=104.9
Q ss_pred HHCCCCEE---EECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 99099989---916510000002882344533026799919999058889999999999765189869998388997431
Q 005508 360 KVLGADVT---CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIV 436 (693)
Q Consensus 360 ~~~Gadl~---~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v 436 (693)
...|++.+ +.....+..+.-| ....+.++......++-+.|.-.+|+.+.. .+. .+|.+.|=++.
T Consensus 25 ~~~~~d~iHiDimDG~Fvpn~t~g-~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~---~~~-~~~~~~i~~~~------- 92 (221)
T d1tqxa_ 25 ESLGAEWIHLDVMDMHFVPNLSFG-PPVINNLKKYTKSIFFDVHLMVEYPEKYVP---LLK-TSNQLTFHFEA------- 92 (221)
T ss_dssp HHTTCSEEEEEEEBSSSSSCBCCC-HHHHHHHGGGCSSCEEEEEEESSCGGGGGG---GCT-TSSEEEEEGGG-------
T ss_pred HHCCCCEEEEECCCCCCCCCCCCC-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHH-HCCCEEEEEEH-------
T ss_conf 974999899977069476764608-288722231177466665677553144425---665-15852688512-------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEC---CCCCCCCCCCCC
Q ss_conf 12774300137938999999984065445779984589989946899999999975987899963---445686678764
Q 005508 437 VNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHG---RTRQQRYSKLAD 513 (693)
Q Consensus 437 ~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHg---Rtr~qryt~~Ad 513 (693)
.........++++.+++. ++-+.+-+.... . ...+...+....++.|.+-+ ....|.+.. .-
T Consensus 93 --------~~~~~~~~~~~i~~i~~~-g~~~Gial~p~t--~---~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~-~~ 157 (221)
T d1tqxa_ 93 --------LNEDTERCIQLAKEIRDN-NLWCGISIKPKT--D---VQKLVPILDTNLINTVLVMTVEPGFGGQSFMH-DM 157 (221)
T ss_dssp --------GTTCHHHHHHHHHHHHTT-TCEEEEEECTTS--C---GGGGHHHHTTTCCSEEEEESSCTTCSSCCCCG-GG
T ss_pred --------HCCCCCHHHHHHHHHHHC-CCEEEEEECCCC--C---CCCCHHHCCCCCCCEEEEEEECCCCCCCCCCC-CH
T ss_conf --------215420036778988755-973777512565--5---11102010004456899986313454312475-12
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHH
Q ss_conf 99999999982999449992987898879998713999678977178762897036787
Q 005508 514 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 514 w~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk 572 (693)
++-|.++++..+ ++.|..-||| +.+.+..+.. .|||.+.+|++.+..+..-..|.
T Consensus 158 l~KI~~lr~~~~-~~~I~VDGGI-n~~~i~~l~~--aGad~iV~GS~if~~~d~~~~i~ 212 (221)
T d1tqxa_ 158 MGKVSFLRKKYK-NLNIQVDGGL-NIETTEISAS--HGANIIVAGTSIFNAEDPKYVID 212 (221)
T ss_dssp HHHHHHHHHHCT-TCEEEEESSC-CHHHHHHHHH--HTCCEEEESHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHCC-CCCEEEECCC-CHHHHHHHHH--CCCCEEEECHHHHCCCCHHHHHH
T ss_conf 678889987367-8434897366-8876999997--69999997859878999999999
|
| >d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: CCCH zinc finger superfamily: CCCH zinc finger family: CCCH zinc finger domain: Butyrate response factor 2 (Tis11D) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.0037 Score=35.36 Aligned_cols=28 Identities=25% Similarity=0.692 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899885762236999985334676653
Q 005508 140 EGECPFLSSEGPCPYGLACRFSGTHRDV 167 (693)
Q Consensus 140 ~~~Cp~f~~~G~Cp~G~~CrF~~sH~~~ 167 (693)
+..|..|...|.||||.+|+|+.+.-+.
T Consensus 6 T~lC~~~~~~g~C~~G~~C~FAHg~~EL 33 (36)
T d1rgoa1 6 TELCRPFEESGTCKYGEKCQFAHGFHEL 33 (36)
T ss_dssp SSBCHHHHHHSCCTTGGGCSSBSSGGGC
T ss_pred HHHCCCHHCCCCCCCCCCCCCCCCHHHC
T ss_conf 3027533228847999967786888780
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.14 Score=24.86 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECH
Q ss_conf 9999999998299944999298789887999871399967897717
Q 005508 514 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 514 w~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGR 559 (693)
..|++.++.-++ .++++..||| +.+++.+.+. .|+.++.+|.
T Consensus 143 ~~~lkal~~p~p-~~~~~ptGGV-~~~n~~~yl~--~g~v~~~~Gs 184 (213)
T d1wbha1 143 VKALQAIAGPFS-QVRFCPTGGI-SPANYRDYLA--LKSVLCIGGS 184 (213)
T ss_dssp HHHHHHHHTTCT-TCEEEEBSSC-CTTTHHHHHT--STTBSCEEEG
T ss_pred HHHHHHHCCCCC-CCCEEEECCC-CHHHHHHHHH--CCCEEEEECH
T ss_conf 999998627365-7836534798-8888999995--8987999882
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.65 E-value=0.15 Score=24.67 Aligned_cols=143 Identities=13% Similarity=0.010 Sum_probs=72.3
Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 991999905888-9999999999765189869998388997431127743001379389999999840654457799845
Q 005508 394 EDLFGVQICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 394 e~pigvQL~G~~-pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR 472 (693)
+.++++-+=-.+ |.....+++.+. .+|+|.+-+|+-+.. +.++++++.... .+-..
T Consensus 51 ~~~if~DlK~~Di~~t~~~~~~~~~-~~gad~~Tvh~~~g~--------------------~~i~~~~~~~~~--~~~~~ 107 (206)
T d2czda1 51 GVEIIADLKLADIPNTNRLIARKVF-GAGADYVIVHTFVGR--------------------DSVMAVKELGEI--IMVVE 107 (206)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHH-HTTCSEEEEESTTCH--------------------HHHHHHHTTSEE--EEECC
T ss_pred CCEEEEEEEEEEECCCCHHEEHHHC-CCCCCEEEEEECCCH--------------------HHHHHHHHCCCC--EEEEE
T ss_conf 9828977545330463100001111-544417876400338--------------------888776522664--47873
Q ss_pred CCC---CC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHH
Q ss_conf 899---89-946899999999975987899963445686678764999999999829994499929878-9887999871
Q 005508 473 TGY---FE-GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIY-SYLDWNKHKS 547 (693)
Q Consensus 473 ~G~---~e-~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~-S~eDa~~~l~ 547 (693)
+.. .+ .......++....+++...+..++. ..+.+..+++..+..+.++.-| |. ...+..+++.
T Consensus 108 ~s~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~----------~~~~~~~~r~~~~~~~~i~~pG-I~~~~~~~~~ai~ 176 (206)
T d2czda1 108 MSHPGALEFINPLTDRFIEVANEIEPFGVIAPGT----------RPERIGYIRDRLKEGIKILAPG-IGAQGGKAKDAVK 176 (206)
T ss_dssp CCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCS----------STHHHHHHHHHSCTTCEEEECC-CCSSTTHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC----------CCHHHHHHHHHHCCCCEEECCC-CCCCCCCHHHHHH
T ss_conf 1577642101479999999997423345544445----------7136666665422565377787-1346899999998
Q ss_pred CCCCCCEEEECHHHHHCCCCHHHHH
Q ss_conf 3999678977178762897036787
Q 005508 548 DCPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 548 ~~~gaDgVMIGRGaL~nPwiF~eIk 572 (693)
.|+|.+.+||+...-+.-...++
T Consensus 177 --~Gad~iVvGR~I~~a~dP~~aa~ 199 (206)
T d2czda1 177 --AGADYIIVGRAIYNAPNPREAAK 199 (206)
T ss_dssp --HTCSEEEECHHHHTSSSHHHHHH
T ss_pred --HCCCEEEECHHHCCCCCHHHHHH
T ss_conf --09999998946615899999999
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=93.61 E-value=0.16 Score=24.63 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=14.9
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999829994499929878988799987139996789771
Q 005508 516 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 516 ~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIG 558 (693)
.+..+++..+ ++||| .|.|-+++-+..+.+ .|||+|-||
T Consensus 129 ~ik~ik~~~~-~~~vi-aGnV~t~~~a~~l~~--~GaD~v~VG 167 (330)
T d1vrda1 129 TLEMIKADYP-DLPVV-AGNVATPEGTEALIK--AGADAVKVG 167 (330)
T ss_dssp HHHHHHHHCT-TSCEE-EEEECSHHHHHHHHH--TTCSEEEEC
T ss_pred HHHHHHHHCC-CCCEE-EECHHHHHHHHHHHH--CCCCEEEEC
T ss_conf 9999887589-98789-503068999999998--389988405
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=93.47 E-value=0.17 Score=24.48 Aligned_cols=198 Identities=14% Similarity=0.149 Sum_probs=112.1
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCCCHHHHH-----------HHHCCCCCCEEEEEEC---CCCHHHHHHH
Q ss_conf 9897939999999990999899165100000028823445-----------3302679991999905---8889999999
Q 005508 347 LTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA-----------LLRRHSSEDLFGVQIC---GAYPDTLART 412 (693)
Q Consensus 347 Mt~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~e~~-----------ll~~h~~e~pigvQL~---G~~pe~~a~A 412 (693)
|.|.-|.++-+++.+.|+|++...--+.. .++|..++.. -+++......+++-+- -...+...++
T Consensus 19 ~lTayD~~~A~~~~~agvDiiLVGDSlgm-v~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~~~~~a~~~ 97 (262)
T d1m3ua_ 19 TITAYDYSFAKLFADEGLNVMLVGDSLGM-TVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFEN 97 (262)
T ss_dssp EEECCSHHHHHHHHHHTCCEEEECTTHHH-HTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHH
T ss_pred EEECCCHHHHHHHHHCCCCEEEECCCHHH-CCCCCCCCCEECHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 99758999999999779988998175786-00688775343157677889999842456216723322321016899999
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC---------CCC---CCH-
Q ss_conf 9997651898699983889974311277430013793899999998406544577998458---------998---994-
Q 005508 413 VELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT---------GYF---EGK- 479 (693)
Q Consensus 413 Ae~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~---------G~~---e~~- 479 (693)
|.++. ++|+|.|=|-.| .. ..++|+.+.+ .++||.--+.+ |+. .+.
T Consensus 98 a~~l~-~~GAdaVKlEgg------------~~-------~~~~I~~L~~-~gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ 156 (262)
T d1m3ua_ 98 AATVM-RAGANMVKIEGG------------EW-------LVETVQMLTE-RAVPVCGHLGLTPQSVNIFGGYKVQGRGDE 156 (262)
T ss_dssp HHHHH-HTTCSEEECCCS------------GG-------GHHHHHHHHH-TTCCEEEEEESCGGGHHHHTSSCCCCCSHH
T ss_pred HHHHH-HCCCCEEEECCC------------HH-------HHHHHHHHHH-CCCEEEEEHHHCHHHHHHCCCCCCCCCCHH
T ss_conf 99999-639737884263------------25-------7899999997-598378555322125534388632574389
Q ss_pred --HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE-E
Q ss_conf --6899999999975987899963445686678764999999999829994499929878988799987139996789-7
Q 005508 480 --NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC-M 556 (693)
Q Consensus 480 --~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgV-M 556 (693)
....+.++.|+++|+.+|.+-+- --+...++.+.+ +||+||-|.= .+|||- +
T Consensus 157 ea~~l~~~a~~le~AGaf~ivlE~v----------p~~va~~It~~~--~IPtIGIGAG-------------~~cDGQvl 211 (262)
T d1m3ua_ 157 AGDQLLSDALALEAAGAQLLVLECV----------PVELAKRITEAL--AIPVIGIGAG-------------NVTDGQIL 211 (262)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESC----------CHHHHHHHHHHC--SSCEEEESSC-------------TTSSEEEE
T ss_pred HHHHHHHHHHHHHHHCCEEEEEECC----------CHHHHHHHHHHH--CCEEEEECCC-------------CCCCCEEE
T ss_conf 9999999999998605517987423----------188999987400--2316765056-------------77861188
Q ss_pred ECHHHHH-CCC-CHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7178762-897-0367874068999978999999999999
Q 005508 557 IARGALI-KPW-IFTEIKEQRHWDITSGERLNIMKDFARF 594 (693)
Q Consensus 557 IGRGaL~-nPw-iF~eIk~~~~~d~s~~Erl~il~~~~~~ 594 (693)
+.--+|+ .++ ...-.+. +.+. ..+..+-+++|.+.
T Consensus 212 v~~DilG~~~~~~Pkf~k~--y~~~-~~~~~~a~~~y~~d 248 (262)
T d1m3ua_ 212 VMHDAFGITGGHIPKFAKN--FLAE-TGDIRAAVRQYMAE 248 (262)
T ss_dssp CHHHHTTCSCSSCCTTCCC--SSTT-TSSHHHHHHHHHHH
T ss_pred EHHHHHCCCCCCCCCHHHH--HHHH-HHHHHHHHHHHHHH
T ss_conf 6567447898989946988--7622-88999999999999
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.17 Score=24.33 Aligned_cols=130 Identities=9% Similarity=0.095 Sum_probs=88.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCC
Q ss_conf 9999058889999999999765189869998388997431127743001379389999999840654-457799845899
Q 005508 397 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGY 475 (693)
Q Consensus 397 igvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G~ 475 (693)
....|.-..|+.+++-|+.+. ..||..|=|.+|-. .-.+.++++++++ ++.+.+..--+|
T Consensus 8 ~~~tv~~~tpe~~~~~a~~~~-~~G~~~~KiKvg~~------------------~d~~~i~~ir~~~~d~~l~vDaN~~~ 68 (208)
T d1jpdx1 8 TAQTVVIGTPDQMANSASTLW-QAGAKLLKVKLDNH------------------LISERMVAIRTAVPDATLIVDANESW 68 (208)
T ss_dssp BCEEECSCCHHHHHHHHHHHH-HTTCSEEEEECCSS------------------CHHHHHHHHHHHCTTSEEEEECTTCC
T ss_pred EEEECCCCCHHHHHHHHHHHH-HCCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 556747899999999999999-77999899977998------------------37999999997453658998154320
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 89946899999999975987899963445686678764999999999829994499929878988799987139996789
Q 005508 476 FEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASC 555 (693)
Q Consensus 476 ~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgV 555 (693)
. ..++..+++.|++.++.+|- |-. ...|+....+++. .+||.+.-.+.+..++..+ . ..+|.+
T Consensus 69 s--~~~A~~~~~~l~~~~l~~iE-------eP~-~~~d~~~~~~l~~----~~pi~~~E~~~~~~~~~~l-~--~~~d~~ 131 (208)
T d1jpdx1 69 R--AEGLAARCQLLADLGVAMLE-------QPL-PAQDDAALENFIH----PLPICADESCHTRSNLKAL-K--GRYEMV 131 (208)
T ss_dssp C--STTHHHHHHHHHHTTCCEEE-------CCS-CTTSCGGGGSSCC----SSCEEESTTCSSGGGHHHH-B--TTBSEE
T ss_pred C--HHHHHHHHHHHHHCCCCCCC-------CCC-CCCCHHHHHHHHC----CCCEECCCCCCCHHHHHHH-H--HCCCEE
T ss_conf 0--16789999988742200257-------668-9537899986611----5603037886888898877-6--216889
Q ss_pred EECHHHH
Q ss_conf 7717876
Q 005508 556 MIARGAL 562 (693)
Q Consensus 556 MIGRGaL 562 (693)
++-=.-+
T Consensus 132 ~~d~~~~ 138 (208)
T d1jpdx1 132 NIKLDKT 138 (208)
T ss_dssp EECHHHH
T ss_pred EECCCCC
T ss_conf 9688323
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.059 Score=27.42 Aligned_cols=187 Identities=9% Similarity=-0.019 Sum_probs=104.8
Q ss_pred HHHHHHHHH---CCCC-EEEECCCCCCHHCCCCHHHHH-H----HHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999---0999-899165100000028823445-3----302679991999905888999999999976518986
Q 005508 353 LPFRRVCKV---LGAD-VTCGEMAMCTNLLQGQASEWA-L----LRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVD 423 (693)
Q Consensus 353 lpFRrl~~~---~Gad-l~~TEMv~a~~L~~g~~~e~~-l----l~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D 423 (693)
..+|+++.. .|++ +++.....--.. -...|+. + .+......++++.+.+.+..+..+.++.+. .+|+|
T Consensus 22 ~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~--Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~-~~Gad 98 (292)
T d2a6na1 22 ASLKKLIDYHVASGTSAIVSVGTTGESAT--LNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFN-DSGIV 98 (292)
T ss_dssp HHHHHHHHHHHHHTCCEEEESSTTTTGGG--SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTT-TSSCC
T ss_pred HHHHHHHHHHHHCCCCEEEECEECCCHHH--CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCHH-HCCCC
T ss_conf 99999999999769998997852543213--8999999985545433145312675045313899999741097-62985
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9998388997431127743001379389999999840654457799845---8998994689999999997598789996
Q 005508 424 FIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR---TGYFEGKNRIDSLIADIGTWGASAVTVH 500 (693)
Q Consensus 424 ~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR---~G~~e~~~~a~~la~~L~e~GvdaItIH 500 (693)
++=+-. |.... -..+-+.+-.+.+.+++++|+.+--- +|..-+. +++.+|.+.. ..+-+-
T Consensus 99 ~~~~~p--P~~~~----------~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~----e~~~~L~~~p-nv~giK 161 (292)
T d2a6na1 99 GCLTVT--PYYNR----------PSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLP----ETVGRLAKVK-NIIGIK 161 (292)
T ss_dssp EEEEEC--CCSSC----------CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCH----HHHHHHHTST-TEEEEE
T ss_pred CEECCC--CCCCC----------CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCH----HHHHHHHCCC-CEEEEE
T ss_conf 414068--87889----------899999999998764458868999702124786598----8989871589-989999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHC
Q ss_conf 34456866787649999999998299944999298789887999871399967897717876289703678740
Q 005508 501 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 501 gRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~ 574 (693)
++ ..++.++..+....+..+. +..|+- ..+...+. .|++|.+.+-+.+ -|.++.++-+.
T Consensus 162 -------~~-~~~~~~~~~~~~~~~~~~~-~~~g~~---~~~~~~~~--~G~~G~i~~~~~~-~p~~~~~i~~~ 220 (292)
T d2a6na1 162 -------EA-TGNLTRVNQIKELVSDDFV-LLSGDD---ASALDFMQ--LGGHGVISVTANV-AARDMAQMCKL 220 (292)
T ss_dssp -------EC-SCCTTHHHHHHTTSCTTSE-EEECCG---GGHHHHHH--TTCCEEEESGGGT-CHHHHHHHHHH
T ss_pred -------EC-CCCCHHHHHHHHHCCCCCE-EEECCH---HHHHHHHH--CCCEEEEEECCHH-HHHCHHHHHHH
T ss_conf -------25-6752034555640699607-953553---54105764--7945988411013-22110232017
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.19 Score=24.14 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=100.9
Q ss_pred HHHHHHHHH---CCCC-EEEECCCCCCHHCCCCHHHH-HHH----HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999---0999-89916510000002882344-533----02679991999905888999999999976518986
Q 005508 353 LPFRRVCKV---LGAD-VTCGEMAMCTNLLQGQASEW-ALL----RRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVD 423 (693)
Q Consensus 353 lpFRrl~~~---~Gad-l~~TEMv~a~~L~~g~~~e~-~ll----~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D 423 (693)
..+|+++.. .|++ +++...+ ..... -...|. .++ +......|+++.+.+.+.....+.|+.+. .+|+|
T Consensus 23 ~~l~~~i~~l~~~Gv~gi~~~G~t-GE~~~-Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~-~~Gad 99 (295)
T d1hl2a_ 23 ASLRRLVQFNIQQGIDGLYVGGST-GEAFV-QSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAK-RYGFD 99 (295)
T ss_dssp HHHHHHHHHHHHHTCSEEEESSGG-GTGGG-SCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHH-HHTCS
T ss_pred HHHHHHHHHHHHCCCCEEEECEEC-CCHHH-CCHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHH-HCCCC
T ss_conf 999999999997699989978576-56444-8999999998666775214431000121101457889887798-63973
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHC-CCCEEE
Q ss_conf 99983889974311277430013793899999998406-5445779984---589989946899999999975-987899
Q 005508 424 FIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG-TVDKPITIKV---RTGYFEGKNRIDSLIADIGTW-GASAVT 498 (693)
Q Consensus 424 ~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~-~v~iPVTVKi---R~G~~e~~~~a~~la~~L~e~-GvdaIt 498 (693)
+|-+- .|.... -..+-+.+-...+.+ +.++|+.+-- +.|..=. .+++.+|.+. .+.+|=
T Consensus 100 ~~~v~--~p~~~~----------~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~----~~~l~~L~~~pnvvgiK 163 (295)
T d1hl2a_ 100 AVSAV--TPFYYP----------FSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLT----LDQINTLVTLPGVGALK 163 (295)
T ss_dssp EEEEE--CCCSSC----------CCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCC----HHHHHHHHTSTTEEEEE
T ss_pred EEEEE--ECCCCC----------CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCHHHHC
T ss_conf 22221--023357----------773779999998750467675211122112466643----21000124574032102
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 963445686678764999999999829994499929878988799987139996789771787628970367874
Q 005508 499 VHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 499 IHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
. ...|+..+.++....+ ++.|++.+|- .+...+. .|++|+|.|-+.+. |.++.++-+
T Consensus 164 ~----------~~~~~~~~~~~~~~~~-~~~v~~g~~~----~~~~~~~--~G~~G~is~~~n~~-p~~~~~i~~ 220 (295)
T d1hl2a_ 164 Q----------TSGDLYQMEQIRREHP-DLVLYNGYDE----IFASGLL--AGADGGIGSTYNIM-GWRYQGIVK 220 (295)
T ss_dssp E----------CCCCHHHHHHHHHHCT-TCEEEECCGG----GHHHHHH--HTCCEEEETTHHHH-HHHHHHHHH
T ss_pred C----------CCCCHHHHHHHHHCCC-CCEEECCCHH----HHHHHHC--CCCCCEECCCHHCC-CHHHHHHHH
T ss_conf 4----------5444887777760488-7157236378----7755530--59773122200001-215678887
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=93.09 E-value=0.19 Score=24.10 Aligned_cols=177 Identities=10% Similarity=0.080 Sum_probs=93.6
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCC-CHHHHH-HHHCCCCCCEEEEEECC-CCHHHHHHHHHHHHHHCCCCE
Q ss_conf 897939999999990999899165100000028-823445-33026799919999058-889999999999765189869
Q 005508 348 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG-QASEWA-LLRRHSSEDLFGVQICG-AYPDTLARTVELIDQQCTVDF 424 (693)
Q Consensus 348 t~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~~g-~~~e~~-ll~~h~~e~pigvQL~G-~~pe~~a~AAe~l~~~aG~D~ 424 (693)
.|++++---++|..+|+|++ .++....--+. ...... +...-+.. ...|-++. .+++.....++ ..++|.
T Consensus 7 CGit~~~da~~~~~~gad~i--GfI~~~~SpR~Vs~~~a~~i~~~~~~~-~~~V~V~v~~~~~~i~~~~~----~~~~~~ 79 (205)
T d1nsja_ 7 CGITNLEDALFSVESGADAV--GFVFYPKSKRYISPEDARRISVELPPF-VFRVGVFVNEEPEKILDVAS----YVQLNA 79 (205)
T ss_dssp CCCCSHHHHHHHHHHTCSEE--EEECCTTCTTBCCHHHHHHHHHHSCSS-SEEEEEESSCCHHHHHHHHH----HHTCSE
T ss_pred CCCCCHHHHHHHHHCCCCEE--EEECCCCCCCCCCHHHHHHHHHHHCCC-CEEECCCCCCHHHHHHHHHH----HCCCCC
T ss_conf 28996999999996799989--675368999860889977777652223-32322224607777776544----202331
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 99838899743112774300137938999999984065445779984589989946899999999975987899963445
Q 005508 425 IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR 504 (693)
Q Consensus 425 IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr 504 (693)
|.||-.- .++... .++... ++...+.. .+.. .+ ......-.+.+.+.....
T Consensus 80 vQlhg~e----------------~~~~~~----~~~~~~--~~~~~~~~---~~~~---~~-~~~~~~~~~~~l~d~~~~ 130 (205)
T d1nsja_ 80 VQLHGEE----------------PIELCR----KIAERI--LVIKAVGV---SNER---DM-ERALNYREFPILLDTKTP 130 (205)
T ss_dssp EEECSCC----------------CHHHHH----HHHTTS--EEEEEEEE---SSHH---HH-HHHGGGTTSCEEEEESCS
T ss_pred HHCCCHH----------------HHHHHH----HCCCCE--EEEEECCC---CCHH---HH-HHHHHCCCCEEEECCCCC
T ss_conf 0002126----------------688875----101100--12330013---2167---77-787640210132113344
Q ss_pred C-CCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCC
Q ss_conf 6-866787649999999998299944999298789887999871399967897717876289
Q 005508 505 Q-QRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 505 ~-qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nP 565 (693)
+ +......||+.+..+.... .|++..||| +++.+.+++.. .+.+||=+..|.=..|
T Consensus 131 ~~GGtG~~~dw~~~~~~~~~~---~~~~LAGGl-~~~Nv~~ai~~-~~p~gvDvsSgvE~~~ 187 (205)
T d1nsja_ 131 EYGGSGKTFDWSLILPYRDRF---RYLVLSGGL-NPENVRSAIDV-VRPFAVDVSSGVEAFP 187 (205)
T ss_dssp SSSSCCSCCCGGGTGGGGGGS---SCEEEESSC-CTTTHHHHHHH-HCCSEEEESGGGEEET
T ss_pred CCCCCCCCCCHHHCCCCHHCC---CCEEEECCC-CHHHHHHHHHH-HCCCEEEECCCCCCCC
T ss_conf 579987621454323210114---633431678-98999999997-5899899818526789
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=92.79 E-value=0.21 Score=23.82 Aligned_cols=41 Identities=12% Similarity=0.013 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEC
Q ss_conf 999999999829994499929878988799987139996789771
Q 005508 514 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 514 w~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIG 558 (693)
..|++.++.-+| +++++..||| +.+++.+.+. .|+..+.+|
T Consensus 142 ~~~lkal~~p~p-~~~~~ptGGV-~~~N~~~yl~--~g~v~~~~G 182 (212)
T d1vhca_ 142 VKMIKALLGPYA-QLQIMPTGGI-GLHNIRDYLA--IPNIVACGG 182 (212)
T ss_dssp HHHHHHHHTTTT-TCEEEEBSSC-CTTTHHHHHT--STTBCCEEE
T ss_pred HHHHHHHHCCCC-CCEEEECCCC-CHHHHHHHHH--CCCEEEEEC
T ss_conf 899998756134-8728853898-8888999993--899799988
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.60 E-value=0.22 Score=23.66 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=69.5
Q ss_pred CCEEECCCCCCCCHHH--HHHHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 9388756989793999--99999909998991651000000288234453302679991999905888999999999976
Q 005508 340 EKLYLAPLTTVGNLPF--RRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELID 417 (693)
Q Consensus 340 nrl~LAPMt~vtdlpF--Rrl~~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~~h~~e~pigvQL~G~~pe~~a~AAe~l~ 417 (693)
.++.++.-.++..... -.+....|+++++...+........ .....++......+++ +|+-. -.++|+.+.
T Consensus 106 ~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~a~g~~~~~~--~~i~~ik~~~~~~~iI---aGnVa--T~e~a~~L~ 178 (378)
T d1jr1a1 106 KQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQI--NMIKYMKEKYPNLQVI---GGNVV--TAAQAKNLI 178 (378)
T ss_dssp SCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECCSSCCSHHHH--HHHHHHHHHSTTCEEE---EEEEC--SHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHH--HHHHHHHHHCCCCCEE---ECCCC--CHHHHHHHH
T ss_conf 6789999956687789999999751555576403676202357--9999999878997253---02201--299999999
Q ss_pred HHCCCCEEEECCC----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5189869998388----997431127743001379389999999840654457799845899899468999999999759
Q 005508 418 QQCTVDFIDINMG----CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG 493 (693)
Q Consensus 418 ~~aG~D~IDLN~G----CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~G 493 (693)
.+|+|+|=+-.| |+...+. |.|- -+..-+.++..+ ....++||..- -|.. +.-.+++.| .+|
T Consensus 179 -~aGAD~VkVGiG~Gs~ctTr~~t--GvG~---pq~sai~~~~~~-a~~~~vpIIAD--GGi~----~~gdiakAl-a~G 244 (378)
T d1jr1a1 179 -DAGVDALRVGMGCGSICITQEVL--ACGR---PQATAVYKVSEY-ARRFGVPVIAD--GGIQ----NVGHIAKAL-ALG 244 (378)
T ss_dssp -HHTCSEEEECSSCSTTBCHHHHH--CCCC---CHHHHHHHHHHH-HGGGTCCEEEE--SCCC----SHHHHHHHH-HTT
T ss_pred -HHCCCEEEECCCCCCCCCCCCCC--CCCC---CCCHHHHHHHHH-HCCCCCCEECC--CCCC----CCCCEEEEE-EEE
T ss_conf -82999786033135444454222--3476---652025678875-11569853425--3335----477324688-860
Q ss_pred CCEEEEECCC
Q ss_conf 8789996344
Q 005508 494 ASAVTVHGRT 503 (693)
Q Consensus 494 vdaItIHgRt 503 (693)
+|+|-+-++-
T Consensus 245 Ad~VMmGs~f 254 (378)
T d1jr1a1 245 ASTVMMGSLL 254 (378)
T ss_dssp CSEEEESTTT
T ss_pred CCEEEECCEE
T ss_conf 5435532321
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=92.57 E-value=0.22 Score=23.63 Aligned_cols=137 Identities=14% Similarity=0.098 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCHH
Q ss_conf 8899999999997651898699983889974311277430-01379389999999840654--45779984589989946
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGS-CLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKN 480 (693)
Q Consensus 404 ~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~Gs-aLl~rp~~l~eIikai~~~v--~iPVTVKiR~G~~e~~~ 480 (693)
-+.+.+.+-++.+. ..|+++|=++. ..|- ..|..-++ .++++.+.+.+ .+||.+.+-. .+..
T Consensus 19 iD~~~~~~~i~~l~-~~Gv~Gi~v~G----------stGE~~~Ls~~Er-~~~~~~~~~~~~~~~~vi~gv~~---~st~ 83 (295)
T d1o5ka_ 19 LDLESYERLVRYQL-ENGVNALIVLG----------TTGESPTVNEDER-EKLVSRTLEIVDGKIPVIVGAGT---NSTE 83 (295)
T ss_dssp ECHHHHHHHHHHHH-HTTCCEEEESS----------GGGTGGGCCHHHH-HHHHHHHHHHHTTSSCEEEECCC---SCHH
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECE----------ECCCHHHCCHHHH-HHHHHHHCCCCCCCCCEEEECCC---CCHH
T ss_conf 89999999999999-76999999790----------1534545899999-99865410023567866861565---4599
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE------ECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 8999999999759878999634456866787649999999998299944999------2987898879998713999678
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLG------NGDIYSYLDWNKHKSDCPELAS 554 (693)
Q Consensus 481 ~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIg------NGdI~S~eDa~~~l~~~~gaDg 554 (693)
++.++++.+++.|+++|.+....-. ..+...-++|...+++.+ ++||+. .|--.+.+...+.+.....+.+
T Consensus 84 ~ai~~a~~A~~~Gad~v~v~pP~y~-~~s~~~i~~~~~~ia~a~--~~pi~iYn~P~~~g~~~~~~~~~~l~~~~~ni~~ 160 (295)
T d1o5ka_ 84 KTLKLVKQAEKLGANGVLVVTPYYN-KPTQEGLYQHYKYISERT--DLGIVVYNVPGRTGVNVLPETAARIAADLKNVVG 160 (295)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCSS-CCCHHHHHHHHHHHHTTC--SSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHHHHHHCC--CCCEEEEECCCHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf 9999999999759999998089899-989999999999998536--9970687563111023026899998861246553
Q ss_pred EEEC
Q ss_conf 9771
Q 005508 555 CMIA 558 (693)
Q Consensus 555 VMIG 558 (693)
+=-+
T Consensus 161 iK~~ 164 (295)
T d1o5ka_ 161 IKEA 164 (295)
T ss_dssp EEEC
T ss_pred EECC
T ss_conf 2317
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.23 Score=23.59 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=77.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf 45779984589989946899999999975987899963445686678764999999999829994499929878988799
Q 005508 464 DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWN 543 (693)
Q Consensus 464 ~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~ 543 (693)
.-||..-+|. ++.+++..+++.|.+.|+..|-|.-|+ +.-.+.|..+++..+ ++ ++|.|-|.+.+++.
T Consensus 14 ~~~iipvlr~---~~~~~a~~~~~al~~~Gi~~iEitl~t-------p~a~~~I~~l~~~~p-~~-~vGaGTV~~~~~~~ 81 (213)
T d1wbha1 14 TGPVVPVIVV---KKLEHAVPMAKALVAGGVRVLNVTLRT-------ECAVDAIRAIAKEVP-EA-IVGAGTVLNPQQLA 81 (213)
T ss_dssp SCSEEEEECC---SSGGGHHHHHHHHHHTTCCEEEEESCS-------TTHHHHHHHHHHHCT-TS-EEEEESCCSHHHHH
T ss_pred HCCEEEEEEC---CCHHHHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHCC-CC-EEECCCCCCHHHHH
T ss_conf 4998999978---999999999999998799889993798-------259999999999789-87-15223046389999
Q ss_pred HHHHCCCCCCEEEECHHHHHCCCCHHHHHHCCC-C---CCCHHHHHHH
Q ss_conf 987139996789771787628970367874068-9---9997899999
Q 005508 544 KHKSDCPELASCMIARGALIKPWIFTEIKEQRH-W---DITSGERLNI 587 (693)
Q Consensus 544 ~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~~~-~---d~s~~Erl~i 587 (693)
.+++ .|++.++.= -.+|.+....++... + -.|.+|...-
T Consensus 82 ~a~~--aGa~FivSP---~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A 124 (213)
T d1wbha1 82 EVTE--AGAQFAISP---GLTEPLLKAATEGTIPLIPGISTVSELMLG 124 (213)
T ss_dssp HHHH--HTCSCEEES---SCCHHHHHHHHHSSSCEEEEESSHHHHHHH
T ss_pred HHHH--CCCCEEECC---CCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 9997--799299789---898899999985598755882877999999
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=92.24 E-value=0.24 Score=23.37 Aligned_cols=149 Identities=13% Similarity=0.010 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCHHH
Q ss_conf 889999999999765189869998388997431127743001379389999999840654--457799845899899468
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 404 ~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR~G~~e~~~~ 481 (693)
-+.+.+.+-++.+. ..|+++|=++. ..|-...-..+--.++++.+.+.+ .+|+.+.+-. .+..+
T Consensus 19 iD~~~~~~~i~~l~-~~Gv~Gl~~~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~---~s~~~ 84 (292)
T d2a6na1 19 VCRASLKKLIDYHV-ASGTSAIVSVG----------TTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGA---NATAE 84 (292)
T ss_dssp BCHHHHHHHHHHHH-HHTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC---SSHHH
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECE----------ECCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCC---CHHHH
T ss_conf 79999999999999-76999899785----------254321389999999855454331453126750453---13899
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE-EE-----CCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 99999999975987899963445686678764999999999829994499-92-----9878988799987139996789
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVL-GN-----GDIYSYLDWNKHKSDCPELASC 555 (693)
Q Consensus 482 a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVI-gN-----GdI~S~eDa~~~l~~~~gaDgV 555 (693)
+.++++.+++.|++++.+..-.- ...+...-.+|...+.+.+ ++||+ .| |--.+++.+.++.+ ..++-|+
T Consensus 85 ~i~~~~~a~~~Gad~~~~~pP~~-~~~~~~~i~~~f~~v~~~~--~~pi~iYn~P~~~g~~~~~e~~~~L~~-~pnv~gi 160 (292)
T d2a6na1 85 AISLTQRFNDSGIVGCLTVTPYY-NRPSQEGLYQHFKAIAEHT--DLPQILYNVPSATGCDLLPETVGRLAK-VKNIIGI 160 (292)
T ss_dssp HHHHHHTTTTSSCCEEEEECCCS-SCCCHHHHHHHHHHHHHTC--SSCEEEEECHHHHSCCCCHHHHHHHHT-STTEEEE
T ss_pred HHHHHCCHHHCCCCCEECCCCCC-CCCCHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCCCHHHHHHHHC-CCCEEEE
T ss_conf 99974109762985414068878-8989999999999876445--886899970212478659889898715-8998999
Q ss_pred EECHHHHHCCCCHHHHHH
Q ss_conf 771787628970367874
Q 005508 556 MIARGALIKPWIFTEIKE 573 (693)
Q Consensus 556 MIGRGaL~nPwiF~eIk~ 573 (693)
=-+. .+++.+..+..
T Consensus 161 K~~~---~~~~~~~~~~~ 175 (292)
T d2a6na1 161 KEAT---GNLTRVNQIKE 175 (292)
T ss_dssp EECS---CCTTHHHHHHT
T ss_pred EECC---CCCHHHHHHHH
T ss_conf 9256---75203455564
|
| >d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Leishmania mexicana [TaxId: 5665]
Probab=92.19 E-value=0.23 Score=23.57 Aligned_cols=43 Identities=19% Similarity=0.404 Sum_probs=36.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 94499929878988799987139996789771787628970367874
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 527 ~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
++||+.-|.| +++.+.+++.. .++||+.||++.|. |. |.+|-+
T Consensus 204 ~i~ilYGGSV-~~~N~~~i~~~-~~vdG~LVG~ASl~-~~-F~~Ii~ 246 (249)
T d1n55a_ 204 KLRILYGGSV-NAANAATLYAK-PDINGFLVGGASLK-PE-FRDIID 246 (249)
T ss_dssp HCEEEEESSC-CTTTHHHHHTS-TTCCEEEESGGGGS-TT-HHHHHH
T ss_pred CCCEEECCCC-CHHHHHHHHCC-CCCCEEEEEHHHCC-HH-HHHHHH
T ss_conf 6528971887-98699999568-89896995226558-99-999999
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=92.12 E-value=0.25 Score=23.27 Aligned_cols=215 Identities=15% Similarity=0.066 Sum_probs=122.4
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCCCHH-H---HH-HH---H--CCCCCCEEEEEECC
Q ss_conf 78211693887569897939999999990999899165100000028823-4---45-33---0--26799919999058
Q 005508 334 KLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQAS-E---WA-LL---R--RHSSEDLFGVQICG 403 (693)
Q Consensus 334 k~l~l~nrl~LAPMt~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~~g~~~-e---~~-ll---~--~h~~e~pigvQL~G 403 (693)
+.+.-.+.+++.| ++-|..--+++...|+..++|--..... ..|.+. + +. ++ + .....-|+++-+=.
T Consensus 9 r~l~~~~~~~~~p--~~~Da~SAr~~e~aGf~a~~~ss~~~aa-s~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~ 85 (275)
T d1s2wa_ 9 KQMLNSKDLEFIM--EAHNGLSARIVQEAGFKGIWGSGLSVSA-QLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADT 85 (275)
T ss_dssp HHHHHSSSCEEEE--EECSHHHHHHHHHHTCSCEEECCHHHHH-TC---------CHHHHHHHHHHHHTCSSCEEEECCS
T ss_pred HHHHHCCCCEEEE--CCCCHHHHHHHHHCCCCEEEHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 9997289978963--5768999999998499999732799999-769999786530068999986630367751573165
Q ss_pred --CCHHHHHHHHHHHHHHCCCCEEEECCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCC---C
Q ss_conf --889999999999765189869998388-9974311277430013793899999998406544577998458998---9
Q 005508 404 --AYPDTLARTVELIDQQCTVDFIDINMG-CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYF---E 477 (693)
Q Consensus 404 --~~pe~~a~AAe~l~~~aG~D~IDLN~G-CP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~---e 477 (693)
.+|....+.++.+. .+|+.+|.|-=. .|...-.-.|....+........++..++....+.++.+--|+... .
T Consensus 86 GyG~~~~v~~tv~~~~-~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~ 164 (275)
T d1s2wa_ 86 GYGNFNNARRLVRKLE-DRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGW 164 (275)
T ss_dssp SCSSHHHHHHHHHHHH-HTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTC
T ss_pred CCCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCC
T ss_conf 6454027999999999-720434575121135445422365433000999999987655413674105773101244169
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 94689999999997598789996344568667876499999999982999449992987898879998713999678977
Q 005508 478 GKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMI 557 (693)
Q Consensus 478 ~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMI 557 (693)
+.+++++=++++.++|+|.|-+++... +.+.+..+......++|+..|..-.....+.+ +.+ -|+.-|.+
T Consensus 165 gl~eai~R~~aY~eAGAD~vf~~~~~~--------~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~e-L~~-lGv~~v~~ 234 (275)
T d1s2wa_ 165 GLDEALKRAEAYRNAGADAILMHSKKA--------DPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDH-FRD-MGVSMVIW 234 (275)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCSS--------SSHHHHHHHHHHTTCSCEEECCSTTTTSCHHH-HHH-HTCCEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC--------CHHHHHHHHHHHCCCCCEEEECCCCCCCHHHH-HHH-CCCCEEEE
T ss_conf 999999999998742798256115668--------57889999875037778797225556507999-998-09999998
Q ss_pred CHHHH
Q ss_conf 17876
Q 005508 558 ARGAL 562 (693)
Q Consensus 558 GRGaL 562 (693)
|-.++
T Consensus 235 g~~~~ 239 (275)
T d1s2wa_ 235 ANHNL 239 (275)
T ss_dssp CSHHH
T ss_pred CHHHH
T ss_conf 51999
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=92.01 E-value=0.26 Score=23.19 Aligned_cols=115 Identities=16% Similarity=0.055 Sum_probs=80.3
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999840654457799845899899468999999999759878999634456866787649999999998299944999
Q 005508 453 KGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLG 532 (693)
Q Consensus 453 ~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIg 532 (693)
.++++.+.+ .++..-+|. ++.+++..+++.|.+.|+..|-|.-|+ +.-++.|..+++..+ + -++|
T Consensus 5 ~~~~~~l~~---~~iipvlr~---~~~~~~~~~~~al~~~Gi~~iEitl~~-------~~a~~~I~~l~~~~p-~-~~vG 69 (212)
T d1vhca_ 5 QQIIEKLRE---LKIVPVIAL---DNADDILPLADTLAKNGLSVAEITFRS-------EAAADAIRLLRANRP-D-FLIA 69 (212)
T ss_dssp HHHHHHHHH---HCEEEEECC---SSGGGHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHHHHHCT-T-CEEE
T ss_pred HHHHHHHHH---CCEEEEEEC---CCHHHHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHCCC-C-CEEE
T ss_conf 999999987---998999968---999999999999998799889995788-------158999999986288-7-3476
Q ss_pred ECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHCC-CC---CCCHHHHHHH
Q ss_conf 2987898879998713999678977178762897036787406-89---9997899999
Q 005508 533 NGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR-HW---DITSGERLNI 587 (693)
Q Consensus 533 NGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~~-~~---d~s~~Erl~i 587 (693)
.|-|.+.+++..+.+ .|++.++.= -.+|.++...++.. .+ -.|.+|...-
T Consensus 70 aGTV~~~~~~~~a~~--aGa~FivSP---~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A 123 (212)
T d1vhca_ 70 AGTVLTAEQVVLAKS--SGADFVVTP---GLNPKIVKLCQDLNFPITPGVNNPMAIEIA 123 (212)
T ss_dssp EESCCSHHHHHHHHH--HTCSEEECS---SCCHHHHHHHHHTTCCEECEECSHHHHHHH
T ss_pred EEECCCHHHHHHHHH--HCCCEEECC---CCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 631465899999986--178689778---887999999985599716886888999999
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=91.88 E-value=0.27 Score=23.10 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=37.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 77998458998994689999999997598789996344568667876499999999982999449992987898879998
Q 005508 466 PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKH 545 (693)
Q Consensus 466 PVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~ 545 (693)
||..-+|. ++.+++..+++.|.+.|+..|-|.-|+ +.-++.|..+++..+ . -++|.|-|.+.+++.++
T Consensus 18 ~iipvl~~---~~~~~a~~~~~al~~~Gi~~iEitl~~-------p~a~~~i~~l~~~~p-~-~~vGaGTV~~~~~~~~a 85 (216)
T d1mxsa_ 18 RILPVITI---AREEDILPLADALAAGGIRTLEVTLRS-------QHGLKAIQVLREQRP-E-LCVGAGTVLDRSMFAAV 85 (216)
T ss_dssp SEEEEECC---SCGGGHHHHHHHHHHTTCCEEEEESSS-------THHHHHHHHHHHHCT-T-SEEEEECCCSHHHHHHH
T ss_pred CEEEEEEC---CCHHHHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHCC-C-CCEEEEEEECHHHHHHH
T ss_conf 97999978---999999999999998799889996798-------069999999998489-7-52311001208889999
Q ss_pred HHCCCCCCEEE
Q ss_conf 71399967897
Q 005508 546 KSDCPELASCM 556 (693)
Q Consensus 546 l~~~~gaDgVM 556 (693)
.+ .|++.+|
T Consensus 86 ~~--aGa~Fiv 94 (216)
T d1mxsa_ 86 EA--AGAQFVV 94 (216)
T ss_dssp HH--HTCSSEE
T ss_pred HH--CCCCEEE
T ss_conf 86--7998997
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=91.83 E-value=0.27 Score=23.06 Aligned_cols=149 Identities=13% Similarity=0.039 Sum_probs=79.6
Q ss_pred CCCEEEEEEC--CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 9991999905--88899999999997651898699983889974311277430013793899999998406544577998
Q 005508 393 SEDLFGVQIC--GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIK 470 (693)
Q Consensus 393 ~e~pigvQL~--G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVK 470 (693)
.-.++++-|+ ..+++.+.+ ++ .+|+|.+=|||..-.. .......+.++.+....+.|+.+-
T Consensus 19 r~TKIIaTiGPas~~~~~l~~---li--~aGvdv~RiN~SHg~~------------e~~~~~i~~iR~~~~~~g~~v~i~ 81 (258)
T d1pkla2 19 RAARIICTIGPSTQSVEALKG---LI--QSGMSVARMNFSHGSH------------EYHQTTINNVRQAAAELGVNIAIA 81 (258)
T ss_dssp CCSEEEEECCGGGCSHHHHHH---HH--HHTEEEEEEETTSSCH------------HHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHH---HH--HCCCCEEEEECCCCCH------------HHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 777489851888699999999---99--8599889997997999------------999999999999999839981411
Q ss_pred ECC-CCCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHH---HHH
Q ss_conf 458-998994689999999997598789996-344568667876499999999982999449992987898879---998
Q 005508 471 VRT-GYFEGKNRIDSLIADIGTWGASAVTVH-GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDW---NKH 545 (693)
Q Consensus 471 iR~-G~~e~~~~a~~la~~L~e~GvdaItIH-gRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa---~~~ 545 (693)
+.+ |..--...-..-+....+.|+++|.+. -| ...|...++.+......++.||+ -|-+.+-. .+.
T Consensus 82 ~d~~gp~~~t~kd~~di~~a~~~~vD~ialSFVr-------s~~Dv~~ir~~l~~~~~~~~iia--KIE~~~al~nldeI 152 (258)
T d1pkla2 82 LDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFIR-------SAEQVGDVRKALGPKGRDIMIIC--KIENHQGVQNIDSI 152 (258)
T ss_dssp EECCCCCSSCHHHHHHHHHHHHHTCSEEEETTCC-------SHHHHHHHHHHHCGGGTTSEEEE--EECSHHHHHTHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC-------CHHHHHHHHHHHHHCCCCCCEEE--EECCCHHHHHHHHH
T ss_conf 0223211221328999998875499857873789-------89999999999997389873599--96573544310667
Q ss_pred HHCCCCCCEEEECHHHHHCCCCHHH
Q ss_conf 7139996789771787628970367
Q 005508 546 KSDCPELASCMIARGALIKPWIFTE 570 (693)
Q Consensus 546 l~~~~gaDgVMIGRGaL~nPwiF~e 570 (693)
+. .+|||||+||-|.-=-=+.+
T Consensus 153 ~~---~sDgImIaRGDLg~ei~~e~ 174 (258)
T d1pkla2 153 IE---ESDGIMVARGDLGVEIPAEK 174 (258)
T ss_dssp HH---HSSEEEECHHHHTTTSCHHH
T ss_pred HH---HCCEEEEECHHHHHHCCHHH
T ss_conf 76---27745674335665346545
|
| >d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.79 E-value=0.19 Score=24.07 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=35.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHC
Q ss_conf 944999298789887999871399967897717876289703678740
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 527 ~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~ 574 (693)
.+||+.-|.| +++.+.+++.. .++||+.||++.| +|. |.+|-+.
T Consensus 210 ~~~iLYGGSV-~~~N~~~i~~~-~~vDG~LVGgASL-~~~-F~~Ii~~ 253 (257)
T d1mo0a_ 210 ATRIIYGGSV-TADNAAELGKK-PDIDGFLVGGASL-KPD-FVKIINA 253 (257)
T ss_dssp HSCEEEESSC-CTTTHHHHTTS-TTCCEEEESGGGG-STH-HHHHHHH
T ss_pred CCCEEEECCC-CHHHHHHHHCC-CCCCEEEEEHHHC-CHH-HHHHHHH
T ss_conf 6658862885-98799999568-8988699514757-867-9999999
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=91.71 E-value=0.28 Score=22.97 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=74.2
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC--CCCCCC---HHHHHHHHHHHCCCC-CCCEEEEECCCCCCCHHHHHH
Q ss_conf 99999765189869998388997431127743--001379---389999999840654-457799845899899468999
Q 005508 411 RTVELIDQQCTVDFIDINMGCPIDIVVNKGAG--SCLLTK---PMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDS 484 (693)
Q Consensus 411 ~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~G--saLl~r---p~~l~eIikai~~~v-~iPVTVKiR~G~~e~~~~a~~ 484 (693)
-.|++++ .+|||+|=+-.+- .....|+. .+++.- -..+.++.+.+...+ ++||.+.+- |+. +..+...
T Consensus 31 lsAklae-~aGfdai~~~~~g---~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~~v~~iPviaD~d-G~g-~~~nv~r 104 (197)
T d2p10a1 31 LSAKSEE-AGDIDLIVIYNSG---RYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPVLAGVN-GTD-PFMVMST 104 (197)
T ss_dssp HHHHHHH-HTTCSEEEECHHH---HHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSSCEEEEEC-TTC-TTCCHHH
T ss_pred HHHHHHH-HCCCCEEEEECHH---HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECC-CCC-CCHHHHH
T ss_conf 9999999-8599899983379---99971785110346720779999999999997513686687027-898-5066999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCC-------------CCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 999999759878999634456866787-------------6499999999982999449992987898879998713999
Q 005508 485 LIADIGTWGASAVTVHGRTRQQRYSKL-------------ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPE 551 (693)
Q Consensus 485 la~~L~e~GvdaItIHgRtr~qryt~~-------------Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~g 551 (693)
.++.++++|+++|.+-.+. ..+.+. .+-+++-..+.. .+.. .|=-...+.+..+.+ .|
T Consensus 105 tv~~~~~aG~agI~~~pk~--g~~~g~~~~~~e~a~~~~~~~~d~liiARtd---a~~~--~g~~~Ai~Ra~ay~e--AG 175 (197)
T d2p10a1 105 FLRELKEIGFAGVQNFPTV--GLIDGLFRQNLEETGMSYAQEVEMIAEAHKL---DLLT--TPYVFSPEDAVAMAK--AG 175 (197)
T ss_dssp HHHHHHHHTCCEEEECSCG--GGCCHHHHHHHHHTTCCHHHHHHHHHHHHHT---TCEE--CCEECSHHHHHHHHH--HT
T ss_pred HHHHHHHCCCEEEECCCCC--CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH---HHHH--CCHHHHHHHHHHHHH--CC
T ss_conf 9999998298388436434--6765145520999988764684399989886---6633--368889999999998--69
Q ss_pred CCEEEE
Q ss_conf 678977
Q 005508 552 LASCMI 557 (693)
Q Consensus 552 aDgVMI 557 (693)
+|.+.+
T Consensus 176 AD~i~~ 181 (197)
T d2p10a1 176 ADILVC 181 (197)
T ss_dssp CSEEEE
T ss_pred CCEEEE
T ss_conf 999997
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.56 E-value=0.29 Score=22.87 Aligned_cols=184 Identities=11% Similarity=-0.032 Sum_probs=104.8
Q ss_pred HHHHHHHHH---CCCC-EEEECCCCCCHHCCCCHHHHH-H----HHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999---0999-899165100000028823445-3----302679991999905888999999999976518986
Q 005508 353 LPFRRVCKV---LGAD-VTCGEMAMCTNLLQGQASEWA-L----LRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVD 423 (693)
Q Consensus 353 lpFRrl~~~---~Gad-l~~TEMv~a~~L~~g~~~e~~-l----l~~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D 423 (693)
-.+|++... .|++ +++...+.--..+ ...|.. + ........|++++..+.+.++..+.|+.+. ..|+|
T Consensus 28 ~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~L--s~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~-~~Gad 104 (296)
T d1xxxa1 28 ATAARLANHLVDQGCDGLVVSGTTGESPTT--TDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACA-AEGAH 104 (296)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTTTTS--CHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHH-HHTCS
T ss_pred HHHHHHHHHHHHCCCCEEEECEECCCHHHC--CHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHH-HHCCC
T ss_conf 999999999997699989978556454348--999999999899998445662474056510678999988878-73378
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC---CCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99983889974311277430013793899999998406544577998458---998994689999999997598789996
Q 005508 424 FIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT---GYFEGKNRIDSLIADIGTWGASAVTVH 500 (693)
Q Consensus 424 ~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~---G~~e~~~~a~~la~~L~e~GvdaItIH 500 (693)
+|-| .-|.... -..+-+.+-.+.+.+++++||.+---. |..- ..+++.+|.+.+ ..+-+-
T Consensus 105 ~v~i--~~P~~~~----------~~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~~~----~~~~~~~L~~~p-~i~giK 167 (296)
T d1xxxa1 105 GLLV--VTPYYSK----------PPQRGLQAHFTAVADATELPMLLYDIPGRSAVPI----EPDTIRALASHP-NIVGVK 167 (296)
T ss_dssp EEEE--ECCCSSC----------CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCC----CHHHHHHHHTST-TEEEEE
T ss_pred EEEE--EECCCCC----------CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----CHHHHHHHCCCC-CEEEEC
T ss_conf 4999--7256789----------8999999999999972599789997864247777----788999855799-961431
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 3445686678764999999999829994499929878988799987139996789771787628970367874
Q 005508 501 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 501 gRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
++ ..||..+.+..... .+-++..++- -+...+. .|++|++.|-+.+. |+++.++-+
T Consensus 168 -------~~-s~d~~~~~~~~~~~--~~~~~~g~~~----~~~~~~~--~G~~G~is~~~n~~-P~~~~~i~~ 223 (296)
T d1xxxa1 168 -------DA-KADLHSGAQIMADT--GLAYYSGDDA----LNLPWLA--MGATGFISVIAHLA-AGQLRELLS 223 (296)
T ss_dssp -------EC-SCCHHHHHHHHHHH--CCEEEECSGG----GHHHHHH--HTCCEEEESTHHHH-HHHHHHHHH
T ss_pred -------CC-CCCHHHHHHHHCCC--CCCCCCCCCC----CCCHHHH--CCCCCCCCHHCCCH-HHHHHHHHH
T ss_conf -------36-43499987651136--6430167531----1124554--25330231000100-388888775
|
| >d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: CCCH zinc finger superfamily: CCCH zinc finger family: CCCH zinc finger domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.044 Score=28.25 Aligned_cols=20 Identities=35% Similarity=0.786 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q ss_conf 98857622369999853346
Q 005508 143 CPFLSSEGPCPYGLACRFSG 162 (693)
Q Consensus 143 Cp~f~~~G~Cp~G~~CrF~~ 162 (693)
|.+|.+.+.|--|.+|+|..
T Consensus 3 CK~yHtg~kCy~gd~C~FSH 22 (56)
T d2cqea1 3 CKLYHTTGNCINGDDCMFSH 22 (56)
T ss_dssp CSHHHHTSCCSSCTTCSSBC
T ss_pred CCEEECCCCCCCCCCCCCCC
T ss_conf 61454587204899640127
|
| >d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.34 E-value=0.29 Score=22.86 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=36.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 94499929878988799987139996789771787628970367874
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 527 ~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
++||+.-|.| +++.+.+++.. .++||+.||++.| +|. |.+|-+
T Consensus 201 ~i~ilYGGSV-~~~N~~~i~~~-~~vDG~LVGgASL-~~e-F~~Ii~ 243 (246)
T d1r2ra_ 201 STRIIYGGSV-TGATCKELASQ-PDVDGFLVGGASL-KPE-FVDIIN 243 (246)
T ss_dssp HCCEEECSCC-CTTTHHHHHTS-TTCCEEEESGGGG-STH-HHHHHT
T ss_pred CCCEEECCCC-CHHHHHHHHCC-CCCCEEEEEHHHC-CHH-HHHHHH
T ss_conf 6658860897-98799999568-8989688502648-879-999997
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.16 E-value=0.32 Score=22.61 Aligned_cols=137 Identities=14% Similarity=-0.013 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCHHH
Q ss_conf 889999999999765189869998388997431127743001379389999999840654--457799845899899468
Q 005508 404 AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV--DKPITIKVRTGYFEGKNR 481 (693)
Q Consensus 404 ~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v--~iPVTVKiR~G~~e~~~~ 481 (693)
-+.+.+.+-++.+. ..|+++|=++. ..|-...-..+--.++++.+.+.+ .+|+.+.+-. .+..+
T Consensus 25 iD~~~l~~~i~~li-~~Gv~Gi~v~G----------~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~---~s~~~ 90 (296)
T d1xxxa1 25 LDTATAARLANHLV-DQGCDGLVVSG----------TTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGT---YDTAH 90 (296)
T ss_dssp BCHHHHHHHHHHHH-HTTCSEEEESS----------TTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCC---SCHHH
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECE----------ECCCHHHCCHHHHHHHHHHHHHHHCCCCCEEECCCC---CHHHH
T ss_conf 29999999999999-76999899785----------564543489999999998999984456624740565---10678
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE------CCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 9999999997598789996344568667876499999999982999449992------9878988799987139996789
Q 005508 482 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGN------GDIYSYLDWNKHKSDCPELASC 555 (693)
Q Consensus 482 a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgN------GdI~S~eDa~~~l~~~~gaDgV 555 (693)
+.++++..++.|++++.|..-.-. ..+...-.+|+.++.+.. ++||+.= |-..+++.+.++.. ...+-++
T Consensus 91 ~i~~a~~a~~~Gad~v~i~~P~~~-~~~~~~l~~~~~~v~~~~--~~pi~lYn~p~~~g~~~~~~~~~~L~~-~p~i~gi 166 (296)
T d1xxxa1 91 SIRLAKACAAEGAHGLLVVTPYYS-KPPQRGLQAHFTAVADAT--ELPMLLYDIPGRSAVPIEPDTIRALAS-HPNIVGV 166 (296)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCSS-CCCHHHHHHHHHHHHTTC--SSCEEEEECHHHHSSCCCHHHHHHHHT-STTEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCHHHHHHHCC-CCCEEEE
T ss_conf 999988878733784999725678-989999999999999725--997899978642477777889998557-9996143
Q ss_pred EEC
Q ss_conf 771
Q 005508 556 MIA 558 (693)
Q Consensus 556 MIG 558 (693)
--+
T Consensus 167 K~~ 169 (296)
T d1xxxa1 167 KDA 169 (296)
T ss_dssp EEC
T ss_pred CCC
T ss_conf 136
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=90.90 E-value=0.34 Score=22.45 Aligned_cols=146 Identities=12% Similarity=0.063 Sum_probs=92.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEE
Q ss_conf 799919999058889999999999765189869998388997431127743001379389999999840654-4577998
Q 005508 392 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIK 470 (693)
Q Consensus 392 ~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVK 470 (693)
..-..+.|-|.+.+.+++...++.+. ..|+|.||+-+-+ ... ..+++.+.++++.++... ++|+.+-
T Consensus 13 ~g~pkIcv~l~~~~~~~~~~~~~~~~-~~~aD~vE~RlD~----l~~-------~~~~~~l~~~~~~lr~~~~~~PiI~T 80 (252)
T d1gqna_ 13 EGMPKIIVSLMGRDINSVKAEALAYR-EATFDILEWRVDH----FMD-------IASTQSVLTAARVIRDAMPDIPLLFT 80 (252)
T ss_dssp SSSCEEEEEECCSSHHHHHHHHHHHT-TSCCSEEEEEGGG----CSC-------TTCHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHH-HCCCCEEEEEECC----CCC-------CCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99987999967899999999999874-3699989998700----245-------69889999999999973579978999
Q ss_pred ECCCCC-----CCHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC-CCC---CHH
Q ss_conf 458998-----99468999999999759-87899963445686678764999999999829994499929-878---988
Q 005508 471 VRTGYF-----EGKNRIDSLIADIGTWG-ASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNG-DIY---SYL 540 (693)
Q Consensus 471 iR~G~~-----e~~~~a~~la~~L~e~G-vdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNG-dI~---S~e 540 (693)
+|..++ -+.+...++...+.+.| +++|.|--.... .....+.+.++.. ++.||++= |.. +.+
T Consensus 81 ~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~------~~~~~li~~a~~~--~~~vI~S~Hdf~~TP~~~ 152 (252)
T d1gqna_ 81 FRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGD------ADVKATVDYAHAH--NVYVVMSNHDFHQTPSAE 152 (252)
T ss_dssp CCBGGGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGGCH------HHHHHHHHHHHHT--TCEEEEEEEESSCCCCHH
T ss_pred EECHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCH------HHHHHHHHHHHCC--CCEEEEEECCCCCCCCHH
T ss_conf 83532178788999999999999997199735712022427------8999999986508--976999866899997999
Q ss_pred HHHHHHH---CCCCCCEEEEC
Q ss_conf 7999871---39996789771
Q 005508 541 DWNKHKS---DCPELASCMIA 558 (693)
Q Consensus 541 Da~~~l~---~~~gaDgVMIG 558 (693)
++...+. . .|+|.|=|+
T Consensus 153 ~l~~~~~~m~~-~gaDivKia 172 (252)
T d1gqna_ 153 EMVSRLRKMQA-LGADIPKIA 172 (252)
T ss_dssp HHHHHHHHHHH-TTCSEEEEE
T ss_pred HHHHHHHHHHH-HCCCEEEEE
T ss_conf 99999999997-389969999
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.47 E-value=0.37 Score=22.20 Aligned_cols=146 Identities=7% Similarity=-0.091 Sum_probs=77.1
Q ss_pred CEEEEEECCCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 91999905888-99999999997651898699983889974311277430013793899999998406544577998458
Q 005508 395 DLFGVQICGAY-PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 473 (693)
Q Consensus 395 ~pigvQL~G~~-pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~ 473 (693)
.++++-+=-.+ |......++.+. .+|+|++-+|..+.. +.+..++++..+. +..+.+-..+
T Consensus 55 ~~i~~D~K~~DIg~t~~~~~~~~~-~~gad~~TVh~~~g~----------------~~i~~~~~~a~~~-~~~~~~l~~~ 116 (212)
T d1km4a_ 55 CRIIADFAVADIPETNEKICRATF-KAGADAIIVHGFPGA----------------DSVRACLNVAEEM-GREVFLLTEM 116 (212)
T ss_dssp CEEEEEEEECSCHHHHHHHHHHHH-HTTCSEEEEESTTCH----------------HHHHHHHHHHHHH-TCEEEEECSC
T ss_pred CCEEHHHHHHCCCCHHHHHHHHHC-CCCCCEEEEECCCCH----------------HHHHHHHHHHHHC-CCCCCCCHHH
T ss_conf 426533356024438887676430-345547877411896----------------8899999999841-9743222000
Q ss_pred C---CCCC-HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHH-HHHHHHHC
Q ss_conf 9---9899-46899999999975987899963445686678764999999999829994499929878988-79998713
Q 005508 474 G---YFEG-KNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL-DWNKHKSD 548 (693)
Q Consensus 474 G---~~e~-~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~e-Da~~~l~~ 548 (693)
. .... ...+.+++....++|++.+.. +...-+.+..+++..+ .-.++..+||.... +..+.+
T Consensus 117 s~~~~~~~~~~~~~~~~~~~~~~g~~g~v~----------~~~~~~~i~~ir~~~~-~~~~~vtpGI~~~g~~~~d~~-- 183 (212)
T d1km4a_ 117 SHPGAEMFIQGAADEIARMGVDLGVKNYVG----------PSTRPERLSRLREIIG-QDSFLISPGVGAQGGDPGETL-- 183 (212)
T ss_dssp SSGGGGTTHHHHHHHHHHHHHHHTCCEEEC----------CTTCHHHHHHHHHHHC-SSSEEEECCBSTTSBCHHHHT--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCC----------CCCCHHHHHHHHHCCC-CCEEEECCCCCCCCCCHHHHH--
T ss_conf 120455433247899999998838764213----------4567777765654058-751687676335889988997--
Q ss_pred CCCCCEEEECHHHHHCCCCHHHHH
Q ss_conf 999678977178762897036787
Q 005508 549 CPELASCMIARGALIKPWIFTEIK 572 (693)
Q Consensus 549 ~~gaDgVMIGRGaL~nPwiF~eIk 572 (693)
.++|.+.|||+.+.-+.-...++
T Consensus 184 -~~ad~iIvGR~I~~a~dP~~aa~ 206 (212)
T d1km4a_ 184 -RFADAIIVGRSIYLADNPAAAAA 206 (212)
T ss_dssp -TTCSEEEECHHHHTSSSHHHHHH
T ss_pred -HHCCEEEECCHHCCCCCHHHHHH
T ss_conf -31999998902044989999999
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=89.99 E-value=0.28 Score=22.93 Aligned_cols=122 Identities=17% Similarity=0.193 Sum_probs=53.9
Q ss_pred HHCCCCEEEECCCCCCHHCCCCHHHHHHHH-CCCCCCEEE-EEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC--CC
Q ss_conf 990999899165100000028823445330-267999199-99058889999999999765189869998388997--43
Q 005508 360 KVLGADVTCGEMAMCTNLLQGQASEWALLR-RHSSEDLFG-VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPI--DI 435 (693)
Q Consensus 360 ~~~Gadl~~TEMv~a~~L~~g~~~e~~ll~-~h~~e~pig-vQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~--~~ 435 (693)
...|+++++-..+...... .......++ ......+++ -.++ .+ ++++.+. .+|+|+|-+-.|.=. ..
T Consensus 119 ~~ag~d~i~IDvAhG~~~~--v~~~i~~ir~~~~~~~~IiAGNVa--T~----e~~~~L~-~aGaD~vkVGIG~Gs~CTT 189 (362)
T d1pvna1 119 VEAGADVLCIDSSDGFSEW--QKITIGWIREKYGDKVKVGAGNIV--DG----EGFRYLA-DAGADFIKIGIGGGSICIT 189 (362)
T ss_dssp HHHTCSEEEECCSCCCBHH--HHHHHHHHHHHHGGGSCEEEEEEC--SH----HHHHHHH-HHTCSEEEECSSCSTTBCH
T ss_pred HHCCCEEEEECHHCCCHHH--HHHHHHHHHHHHCCCEEEECCCCC--CH----HHHHHHH-HHCCCEEEECCCCCCCCCC
T ss_conf 6418547753000010157--889999998865331034212446--78----8999999-7297579844303434343
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCC-----CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 112774300137938999999984065-----44577998458998994689999999997598789996
Q 005508 436 VVNKGAGSCLLTKPMRMKGIIEATSGT-----VDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 500 (693)
Q Consensus 436 v~~~G~GsaLl~rp~~l~eIikai~~~-----v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIH 500 (693)
....|.|- -+..-+.++..+.++. ..+||... -|. .+.-.+++.| .+|+|+|-+-
T Consensus 190 r~~tGvG~---Pq~sAv~e~a~~~~~~~~~~~~~v~iiaD--GGi----~~~gdi~KAl-a~GAd~VM~G 249 (362)
T d1pvna1 190 REQKGIGR---GQATAVIDVVAERNKYFEETGIYIPVCSD--GGI----VYDYHMTLAL-AMGADFIMLG 249 (362)
T ss_dssp HHHTCBCC---CHHHHHHHHHHHHHHHHHHHSEECCEEEE--SCC----CSHHHHHHHH-HTTCSEEEES
T ss_pred HHHHCCCC---CHHHHHHHHHHHHHHHHHHCCCCCCEEEC--CCC----CCCCCEEEEE-EEECCCEEEH
T ss_conf 65550377---16779999999998753320368753533--234----7466235788-8713400211
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=89.77 E-value=0.41 Score=21.84 Aligned_cols=75 Identities=12% Similarity=0.031 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHH
Q ss_conf 89999999997598789996344568667876499999999982999449992987898879998713999678977178
Q 005508 481 RIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560 (693)
Q Consensus 481 ~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRG 560 (693)
+..++++.+++.|+++|.|- .++.|-+ -+++++..+++.+ ++||+-.-=|.++-.+.+... .|||+|.+--+
T Consensus 66 dp~~~A~~y~~~GA~aiSVL---Te~~~F~-Gs~~dl~~v~~~~--~iPvLrKDFIid~~QI~ea~~--~GADaVLLIaa 137 (254)
T d1vc4a_ 66 DPVEAALAYARGGARAVSVL---TEPHRFG-GSLLDLKRVREAV--DLPLLRKDFVVDPFMLEEARA--FGASAALLIVA 137 (254)
T ss_dssp CHHHHHHHHHHTTCSEEEEE---CCCSSSC-CCHHHHHHHHHHC--CSCEEEESCCCSHHHHHHHHH--TTCSEEEEEHH
T ss_pred CHHHHHHHHHHCCCCEEEEE---CCCCCCC-CCHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHH--CCCHHHHHHHH
T ss_conf 99999999974488468997---5766355-6689999999873--887224883445999988876--05238999999
Q ss_pred HHH
Q ss_conf 762
Q 005508 561 ALI 563 (693)
Q Consensus 561 aL~ 563 (693)
++.
T Consensus 138 ll~ 140 (254)
T d1vc4a_ 138 LLG 140 (254)
T ss_dssp HHG
T ss_pred HHH
T ss_conf 987
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=89.74 E-value=0.42 Score=21.82 Aligned_cols=151 Identities=9% Similarity=0.003 Sum_probs=89.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 999199990588899999999997651898699983889-9743112774300137938999999984065445779984
Q 005508 393 SEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGC-PIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKV 471 (693)
Q Consensus 393 ~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GC-P~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKi 471 (693)
...|+..|.+++.++..-.+. . .+++.+- +.+- -+.... .-.|..+...++.+.+.|++++...+.-+.+.+
T Consensus 5 ~~VP~~g~~g~~~~~~~e~mI---~--~~a~~~~-~~~~~~lk~kv-G~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~i 77 (251)
T d1kkoa1 5 EAIPLFGQSGDDRYIAVDKMI---L--KGVDVLP-HALINNVEEKL-GFKGEKLREYVRWLSDRILSLRSSPRYHPTLHI 77 (251)
T ss_dssp CCCCEECCCTTCTTHHHHHHH---H--TTCSEEE-ETTCCCCCCCC-CTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCHHHHH---H--HHHHHHH-HHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 872621022899610218999---9--6557789-98899999994-777887188999999999999737587851232
Q ss_pred CC--------CCCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCCCC---CCCCCHHHHHHHHHHC---CCCCEEEEECCC
Q ss_conf 58--------99899468999999999759878-999634456866---7876499999999982---999449992987
Q 005508 472 RT--------GYFEGKNRIDSLIADIGTWGASA-VTVHGRTRQQRY---SKLADWDYIYQCARKA---SDDLQVLGNGDI 536 (693)
Q Consensus 472 R~--------G~~e~~~~a~~la~~L~e~Gvda-ItIHgRtr~qry---t~~Adw~~I~~i~~~~---~~~IPVIgNGdI 536 (693)
-. +| +...+.+++..|.+.+..+ |.| +|.. ..+.||+..+++.+.+ ..++||++.=.+
T Consensus 78 D~~~~~~~~~~~--~~~~ai~~l~~L~~~~~~~~l~I-----EqP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~~ 150 (251)
T d1kkoa1 78 DVYGTIGLIFDM--DPVRCAEYIASLEKEAQGLPLYI-----EGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWC 150 (251)
T ss_dssp ECTTHHHHHTTT--CHHHHHHHHHHTGGGGTTSCEEE-----ECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTC
T ss_pred CCCCCCCCCCCC--CHHHHHHHHHHHHHHCCCCCEEE-----CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCEE
T ss_conf 013200123589--99999999999998567885433-----37766555667899999999997516997237314600
Q ss_pred CCHHHHHHHHHCCCCCCEEEEC
Q ss_conf 8988799987139996789771
Q 005508 537 YSYLDWNKHKSDCPELASCMIA 558 (693)
Q Consensus 537 ~S~eDa~~~l~~~~gaDgVMIG 558 (693)
+|.+|+.++++. ..+|.|.|-
T Consensus 151 ~t~~d~~~~i~~-~a~d~v~iK 171 (251)
T d1kkoa1 151 NTYQDIVDFTDA-GSCHMVQIK 171 (251)
T ss_dssp CSHHHHHHHHHT-TCCSEEEEC
T ss_pred CCHHHHHHHHHH-CCCCCEECC
T ss_conf 789999999984-776621015
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=89.57 E-value=0.43 Score=21.74 Aligned_cols=152 Identities=13% Similarity=0.035 Sum_probs=82.3
Q ss_pred HHHHHHHCCCCCCEEEE-EECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 34453302679991999-90588899999999997651898699983889974311277430013793899999998406
Q 005508 383 SEWALLRRHSSEDLFGV-QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSG 461 (693)
Q Consensus 383 ~e~~ll~~h~~e~pigv-QL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~ 461 (693)
.....++......++.. -.....+..+.+++ . .+|+|.|-+|.-+ .++.+..+++..++
T Consensus 43 ~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~---~-~~gad~vtvh~~~----------------g~~~~~~~~~~~~~ 102 (213)
T d1q6oa_ 43 RAVRDLKALYPHKIVLADAKIADAGKILSRMC---F-EANADWVTVICCA----------------DINTAKGALDVAKE 102 (213)
T ss_dssp HHHHHHHHHCTTSEEEEEEEECSCHHHHHHHH---H-HTTCSEEEEETTS----------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH---H-HCCCCEEEEECCC----------------CCHHHHHHHHHHHH
T ss_conf 99999998545556046776145157888999---9-8099999980357----------------81689999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CCCCCHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 54457799845899899468999999999759878999634456866---787649999999998299944999298789
Q 005508 462 TVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRY---SKLADWDYIYQCARKASDDLQVLGNGDIYS 538 (693)
Q Consensus 462 ~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qry---t~~Adw~~I~~i~~~~~~~IPVIgNGdI~S 538 (693)
. +.-+.+-+-.. .+ ...+..+.+.+++.+.+|.....+.. .....+..+.+.... .+++..-|++ +
T Consensus 103 ~-~~~~~v~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~---~~~i~~~gGi-~ 171 (213)
T d1q6oa_ 103 F-NGDVQIELTGY--WT----WEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDM---GFKVTVTGGL-A 171 (213)
T ss_dssp T-TCEEEEEECSC--CC----HHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHT---TCEEEEESSC-C
T ss_pred C-CCCEECCCCCC--CC----HHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHCC---CCEEECCCCC-C
T ss_conf 1-98201265899--99----99999999867889898870246858865778899999986255---8618338886-8
Q ss_pred HHHHHHHHHCCCCCCEEEECHHHHHCCCC
Q ss_conf 88799987139996789771787628970
Q 005508 539 YLDWNKHKSDCPELASCMIARGALIKPWI 567 (693)
Q Consensus 539 ~eDa~~~l~~~~gaDgVMIGRGaL~nPwi 567 (693)
++++.+++. .|+|.+.|||+.......
T Consensus 172 ~~~~~~~~~--~Gad~iVVGr~I~~a~dp 198 (213)
T d1q6oa_ 172 LEDLPLFKG--IPIHVFIAGRSIRDAASP 198 (213)
T ss_dssp GGGGGGGTT--SCCSEEEESHHHHTSSCH
T ss_pred CCCHHHHHH--CCCCEEEECHHHCCCCCH
T ss_conf 589999998--699999988242689999
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=89.52 E-value=0.43 Score=21.71 Aligned_cols=74 Identities=7% Similarity=-0.032 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECH
Q ss_conf 68999999999759878999634456866787649999999998299944999298789887999871399967897717
Q 005508 480 NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIAR 559 (693)
Q Consensus 480 ~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGR 559 (693)
......+..-.-.+...+.+-+ +.. ..+-+.+..+++... ++||+.-+||.|++++.++. .++|||.||.
T Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~-tg~-----~~~~~~~~~v~~~~~-~~Pl~VGFGIst~e~a~~v~---~~ADgVVVGS 210 (229)
T d1viza_ 141 DDIVAYARVSELLQLPIFYLEY-SGV-----LGDIEAVKKTKAVLE-TSTLFYGGGIKDAETAKQYA---EHADVIVVGN 210 (229)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEC-TTS-----CCCHHHHHHHHHTCS-SSEEEEESSCCSHHHHHHHH---TTCSEEEECT
T ss_pred HHHHHHHHHCCCEEEEEEEEEC-CCC-----CCCCHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHH---CCCCEEEECH
T ss_conf 8999999620614489999843-676-----654106888876505-76247871639999999998---4799999997
Q ss_pred HHHH
Q ss_conf 8762
Q 005508 560 GALI 563 (693)
Q Consensus 560 GaL~ 563 (693)
+...
T Consensus 211 Aiv~ 214 (229)
T d1viza_ 211 AVYE 214 (229)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9982
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.99 E-value=0.47 Score=21.46 Aligned_cols=136 Identities=12% Similarity=0.108 Sum_probs=92.1
Q ss_pred EEEEEEC-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECC
Q ss_conf 1999905-8889999999999765189869998388997431127743001379389999999840654-4577998458
Q 005508 396 LFGVQIC-GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRT 473 (693)
Q Consensus 396 pigvQL~-G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~ 473 (693)
|+.+.+. +.+++.+++.++.+. ..||..|-|..| | ..+.+ .++++++.+ ++.+.|-.--
T Consensus 6 pv~~s~g~~~~~~~~~~~~~~~~-~~G~~~~Kikvg-~-------------~~D~~----~v~~ir~~~~d~~l~vDaN~ 66 (241)
T d1wuea1 6 PVGISLGIQEDLPQLLKQVQLAV-EKGYQRVKLKIR-P-------------GYDVE----PVALIRQHFPNLPLMVDANS 66 (241)
T ss_dssp ECCEEECCCSCHHHHHHHHHHHH-HTTCSCEEEECB-T-------------TBSHH----HHHHHHHHCTTSCEEEECTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHH-HCCCCEEEEECC-C-------------CHHHH----HHHHHHHHCCCCCEEECCCC
T ss_conf 99899478899999999999999-879998999748-6-------------27999----99999974552014522455
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 99899468999999999759878999634456866787649999999998299944999298789887999871399967
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA 553 (693)
Q Consensus 474 G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaD 553 (693)
+|. ..++..+ .++.+.++.+| +|-. ..-+|+-.+++++.. ++||.+.-.+++..++..+++. ..+|
T Consensus 67 ~~~--~~~a~~~-~~~~~~~i~~i-------EeP~-~~~~~~~~~~l~~~~--~~pIa~gE~~~~~~~~~~~i~~-~~~d 132 (241)
T d1wuea1 67 AYT--LADLPQL-QRLDHYQLAMI-------EQPF-AADDFLDHAQLQREL--KTRICLDENIRSLKDCQVALAL-GSCR 132 (241)
T ss_dssp CCC--GGGHHHH-HGGGGSCCSCE-------ECCS-CTTCSHHHHHHHTTC--SSCEEECTTCCSHHHHHHHHHH-TCCS
T ss_pred CCC--HHHHHHH-HHHHHHHHHHH-------CCCC-CCCCHHHHHHHHCCC--CCCCCCCCCCCCCHHHHHHHHH-HHHH
T ss_conf 677--7774321-21221013444-------4763-211335666652031--1222357544561255555555-5566
Q ss_pred EEEECHHHHHC
Q ss_conf 89771787628
Q 005508 554 SCMIARGALIK 564 (693)
Q Consensus 554 gVMIGRGaL~n 564 (693)
.+++--+-++-
T Consensus 133 ~i~~d~~~~GG 143 (241)
T d1wuea1 133 SINLKIPRVGG 143 (241)
T ss_dssp EEEECHHHHTS
T ss_pred HHCCCCCCCCC
T ss_conf 51212012567
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.80 E-value=0.49 Score=21.38 Aligned_cols=142 Identities=14% Similarity=0.061 Sum_probs=63.8
Q ss_pred CEEEEEECC--CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEE
Q ss_conf 919999058--889999999999765189869998388997431127743001379389999999840654-45779984
Q 005508 395 DLFGVQICG--AYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKV 471 (693)
Q Consensus 395 ~pigvQL~G--~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKi 471 (693)
+++++-|+- .+++.+.+ ++ .+|+|.+=|||..-.. .......+.++.+.+.. +.|+.+-+
T Consensus 21 TKIIaTiGPas~~~e~l~~---li--~aG~dv~RlN~SHg~~------------~~h~~~i~~iR~~~e~~~G~~v~i~~ 83 (265)
T d1a3xa2 21 TSIIGTIGPKTNNPETLVA---LR--KAGLNIVRMNFSHGSY------------EYHKSVIDNARKSEELYPGRPLAIAL 83 (265)
T ss_dssp SEEEEECCTTTCSHHHHHH---HH--HHTEEEEEEETTSCCH------------HHHHHHHHHHHHHHHHCCCSCCBCEE
T ss_pred CEEEEEECCCCCCHHHHHH---HH--HCCCCEEEEECCCCCH------------HHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 6079832788799999999---99--8699999997887999------------99999999999985204678421101
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHH---HHHHHHHC
Q ss_conf 589989946899999999975987899963445686678764999999999829994499929878988---79998713
Q 005508 472 RTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYL---DWNKHKSD 548 (693)
Q Consensus 472 R~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~e---Da~~~l~~ 548 (693)
.+....-.+.-..-+....+.|+++|.+.-- ....|...++.+......+++||+- |-+.+ +..+.+..
T Consensus 84 dl~~p~ltekD~~di~~a~~~~vD~ialSFV------rs~~Di~~~r~~l~~~~~~~~IiaK--IE~~~al~NldeIi~~ 155 (265)
T d1a3xa2 84 DTKGPALSEKDKEDLRFGVKNGVHMVFASFI------RTANDVLTIREVLGEQGKDVKIIVK--IENQQGVNNFDEILKV 155 (265)
T ss_dssp ECCCCSSCHHHHHHHHHHHHTTCCEECCTTC------CSHHHHHHHHHHHCGGGTTSCCEEE--ECSHHHHTTHHHHHHH
T ss_pred CCCCHHCCCCHHHHHHHHHHCCCCEEEECCC------CCHHHHHHHHHHHHHHCCCCEEEEE--CCCHHHHHCHHHHHHH
T ss_conf 2210110244499999865426516752567------9889999999999873579707763--1536777575888863
Q ss_pred CCCCCEEEECHHHHHC
Q ss_conf 9996789771787628
Q 005508 549 CPELASCMIARGALIK 564 (693)
Q Consensus 549 ~~gaDgVMIGRGaL~n 564 (693)
+|||||+||-|.-
T Consensus 156 ---sDgimIaRGDLgv 168 (265)
T d1a3xa2 156 ---TDGVMVARGDLGI 168 (265)
T ss_dssp ---CSEEEEEHHHHHH
T ss_pred ---CCEEEEECCCHHH
T ss_conf ---5515887243023
|
| >d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.59 E-value=0.33 Score=22.51 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=35.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHHC
Q ss_conf 944999298789887999871399967897717876289703678740
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 574 (693)
Q Consensus 527 ~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~ 574 (693)
.+||+.-|.| +++.+.+++.. .++||+.||++.| +|. |.+|-..
T Consensus 202 ~i~iLYGGSV-~~~N~~~i~~~-~~iDG~LVGgASL-~~e-F~~Ii~~ 245 (247)
T d1neya_ 202 ELRILYGGSA-NGSNAVTFKDK-ADVDGFLVGGASL-KPE-FVDIINS 245 (247)
T ss_dssp HCCEEEESSC-CTTTGGGGTTC-TTCCEEEESGGGG-STH-HHHHHTT
T ss_pred CCCEEEECCC-CHHHHHHHHCC-CCCCEEEEEHHHC-CHH-HHHHHHC
T ss_conf 6748980788-88899999668-8988699523758-868-9999862
|
| >d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: CCCH zinc finger superfamily: CCCH zinc finger family: CCCH zinc finger domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.05 E-value=0.12 Score=25.50 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=20.8
Q ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 0158824360699889998999978789
Q 005508 100 ASHLCPEVAKSGDVSSCPYKDKCRFSHD 127 (693)
Q Consensus 100 ~~~LC~~~~~~~~~~~C~~Gd~Crf~Hd 127 (693)
+..||.+++.| -|..||+|.|.|+
T Consensus 5 kkelCKfYvqG----yCtrgenC~ymH~ 28 (29)
T d2cqea2 5 KRELCKFYITG----FCARAENCPYMHG 28 (29)
T ss_dssp CCSBCTTTTTT----CCSCSTTCSSBSS
T ss_pred HHHHHHHHEEE----EECCCCCCCCCCC
T ss_conf 66666632021----3427767642257
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=87.40 E-value=0.59 Score=20.82 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=28.8
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCH---HHHHHHHHCCCCCCEEEECHHH
Q ss_conf 9999997598789996344568667876499999999982999449992987898---8799987139996789771787
Q 005508 485 LIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSY---LDWNKHKSDCPELASCMIARGA 561 (693)
Q Consensus 485 la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~---eDa~~~l~~~~gaDgVMIGRGa 561 (693)
-+....+.|+++|.+.=- ....|...++.+......+++||+- |-+. +++.+.+.. +|||||+||-
T Consensus 114 di~~a~~~~vD~ialSFV------rs~~DI~~~r~~l~~~g~~~~IiaK--IE~~~al~NldeIi~~---sDgIMIaRGD 182 (282)
T d2g50a2 114 DLKFGVEQDVDMVFASFI------RKAADVHEVRKILGEKGKNIKIISK--IENHEGVRRFDEILEA---SDGIMVARGD 182 (282)
T ss_dssp HHHHHHHTTCSEEEETTC------CSHHHHHHHHHHHTTTTTTSEEEEE--ECSHHHHHTHHHHHHH---SSEEEEEHHH
T ss_pred HHHHHHHCCCCCEEECCC------CCHHHHHHHHHHHHHCCCCCEEEEE--ECCHHHHHCCHHHCCC---CCEEEEECCC
T ss_conf 998766335664253466------9889999999999973998537875--3214555341223123---6604665230
Q ss_pred HH
Q ss_conf 62
Q 005508 562 LI 563 (693)
Q Consensus 562 L~ 563 (693)
|.
T Consensus 183 Lg 184 (282)
T d2g50a2 183 LG 184 (282)
T ss_dssp HH
T ss_pred CC
T ss_conf 00
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.12 E-value=0.77 Score=20.06 Aligned_cols=184 Identities=13% Similarity=0.063 Sum_probs=102.7
Q ss_pred HHHHHHHHH---CCCC-EEEECCCCCCHHCCCCHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 999999999---0999-899165100000028823445330-26799919999058889999999999765189869998
Q 005508 353 LPFRRVCKV---LGAD-VTCGEMAMCTNLLQGQASEWALLR-RHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDI 427 (693)
Q Consensus 353 lpFRrl~~~---~Gad-l~~TEMv~a~~L~~g~~~e~~ll~-~h~~e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDL 427 (693)
..+++++.. .|++ +++.... .....-.......+++ ......++++.+.+.+.++..+.++.+. .+|+|++-+
T Consensus 20 ~~~~~~i~~l~~~Gv~gi~~~Gtt-GE~~~Ls~~Er~~~~~~~~~~~~~~i~gv~~~st~~~i~~a~~a~-~~Ga~~~~~ 97 (293)
T d1w3ia_ 20 EKLKIHAENLIRKGIDKLFVNGTT-GLGPSLSPEEKLENLKAVYDVTNKIIFQVGGLNLDDAIRLAKLSK-DFDIVGIAS 97 (293)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTT-TTGGGSCHHHHHHHHHHHHTTCSCEEEECCCSCHHHHHHHHHHGG-GSCCSEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECEEC-HHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCCCCC
T ss_conf 999999999997699989977204-115458899999999998763211000122201245666425665-421323222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 388997431127743001379389999999840654457799845---89989946899999999975987899963445
Q 005508 428 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR---TGYFEGKNRIDSLIADIGTWGASAVTVHGRTR 504 (693)
Q Consensus 428 N~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR---~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr 504 (693)
- .|.... --..+-+.+-.+.+.+++++|+.+--- +|.+-.. +++..+ ..+.+ + +
T Consensus 98 ~--~P~~~~---------~~~~~~i~~~f~~Ia~a~~~pi~lYn~P~~~g~~l~~----~~~~~l--~ni~g--i----K 154 (293)
T d1w3ia_ 98 Y--APYYYP---------RMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDA----KVAKEI--GCFTG--V----K 154 (293)
T ss_dssp E--CCCSCS---------SCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCH----HHHHHH--CCEEE--E----E
T ss_pred C--CCCHHC---------CCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCH----HHHHHH--HHHHC--C----C
T ss_conf 3--320000---------0028889999999987431100233146652222203----667765--53210--0----1
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 686678764999999999829994499929878988799987139996789771787628970367874
Q 005508 505 QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 505 ~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
++ ..|+..+.++.+..+ ++.|+...|- .+...+. .|++|++.|-+.+ -|+++.++.+
T Consensus 155 ---~s-s~d~~~~~~~~~~~~-~~~v~~G~d~----~~~~~~~--~Ga~G~is~~~n~-~P~~~~~l~~ 211 (293)
T d1w3ia_ 155 ---DT-IENIIHTLDYKRLNP-NMLVYSGSDM----LIATVAS--TGLDGNVAAGSNY-LPEVTVTIKK 211 (293)
T ss_dssp ---EC-CSCHHHHHHHHHHCT-TSEEEECCST----THHHHHH--TTCCEEECGGGGT-CHHHHHHHHH
T ss_pred ---CC-CCCHHHHHHHHHHCC-CEECCCCCCC----CHHHHHC--CCCCEEEECCCCH-HHHHHHHHHH
T ss_conf ---13-566899988875044-3002344431----0103330--5776022021211-1234566789
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=85.05 E-value=0.78 Score=20.04 Aligned_cols=107 Identities=12% Similarity=0.039 Sum_probs=74.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
Q ss_conf 57799845899899468999999999759878999634456866787649999999998299944999298789887999
Q 005508 465 KPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNK 544 (693)
Q Consensus 465 iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~ 544 (693)
.|+..=+|. ++.+++..+++.|.+.|+..|-|.-|+ +.-++.|++++.... +--++|.|-|.+.+++..
T Consensus 9 ~~iipvlr~---~~~~~a~~~~~al~~~Gi~~iEitlr~-------p~a~~~i~~l~~~~~-~~~~vGaGTV~~~~~~~~ 77 (202)
T d1wa3a1 9 HKIVAVLRA---NSVEEAKEKALAVFEGGVHLIEITFTV-------PDADTVIKELSFLKE-KGAIIGAGTVTSVEQCRK 77 (202)
T ss_dssp HCEEEEECC---SSHHHHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHTHHHHH-TTCEEEEESCCSHHHHHH
T ss_pred CCEEEEEEC---CCHHHHHHHHHHHHHCCCCEEEEECCC-------CCHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHH
T ss_conf 997999978---999999999999998699889995589-------628999999998508-984898514233789999
Q ss_pred HHHCCCCCCEEEECHHHHHCCCCHHHHHHCC-CC---CCCHHHHHHH
Q ss_conf 8713999678977178762897036787406-89---9997899999
Q 005508 545 HKSDCPELASCMIARGALIKPWIFTEIKEQR-HW---DITSGERLNI 587 (693)
Q Consensus 545 ~l~~~~gaDgVMIGRGaL~nPwiF~eIk~~~-~~---d~s~~Erl~i 587 (693)
+++ .|++.++. --.+|.+.+...+.. .+ -.|.+|.+.-
T Consensus 78 a~~--aGa~fivs---P~~~~~v~~~~~~~~i~~iPGv~TpsEi~~A 119 (202)
T d1wa3a1 78 AVE--SGAEFIVS---PHLDEEISQFCKEKGVFYMPGVMTPTELVKA 119 (202)
T ss_dssp HHH--HTCSEEEC---SSCCHHHHHHHHHHTCEEECEECSHHHHHHH
T ss_pred HHH--HCCCEEEC---CCCCHHHHHHHHHCCCCEECCCCCHHHHHHH
T ss_conf 986--05647747---8773999999986599561781868899999
|
| >d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Trypanosoma brucei [TaxId: 5691]
Probab=84.29 E-value=0.84 Score=19.82 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=36.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 94499929878988799987139996789771787628970367874
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 527 ~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
++||+.-|.| +++.+.+++.. .++||+.||++.|. |. |.+|-+
T Consensus 204 ~~~ilYGGSV-~~~N~~~i~~~-~~vDG~LVGgASl~-~e-F~~Ii~ 246 (249)
T d1kv5a_ 204 ELRILYGGSV-NGKNARTLYQQ-RDVNGFLVGGASLK-PE-FVDIIK 246 (249)
T ss_dssp HCCEEEESSC-CTTTHHHHHTS-TTCCEEEESGGGGS-TT-HHHHHH
T ss_pred CCCEEECCCC-CHHHHHHHHCC-CCCCEEEECHHHCC-HH-HHHHHH
T ss_conf 7748971897-98699999668-89997895227569-89-999998
|
| >d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermotoga maritima [TaxId: 2336]
Probab=84.17 E-value=0.85 Score=19.79 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=35.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 94499929878988799987139996789771787628970367874
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 527 ~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
++||+.-|.| +++.+.+++.. .++||+.||++.|. |. |.+|-.
T Consensus 205 ~i~ilYGGSV-~~~N~~~i~~~-~~vDG~LVGgASL~-~~-F~~I~~ 247 (252)
T d1b9ba_ 205 SIRILYGGSI-KPDNFLGLIVQ-KDIDGGLVGGASLK-ES-FIELAR 247 (252)
T ss_dssp HSEEEEESSC-CHHHHTTTSSS-TTCCEEEESGGGTS-TH-HHHHHH
T ss_pred CCCEEECCCC-CHHHHHHHHCC-CCCCEEEEECHHCC-HH-HHHHHH
T ss_conf 6428971898-98799998567-79997996122088-78-999999
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=84.12 E-value=0.85 Score=19.78 Aligned_cols=125 Identities=9% Similarity=0.054 Sum_probs=72.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCEEEEECCC
Q ss_conf 19999058889999999999765189869998388997431127743001379389999999840654-45779984589
Q 005508 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTG 474 (693)
Q Consensus 396 pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v-~iPVTVKiR~G 474 (693)
+++.=|.+.++++....++.+. ..|+..|||-+--|. ..++++.+++.. + +.|..-+=
T Consensus 18 ~iipvl~~~~~~~a~~~~~al~-~~Gi~~iEitl~~p~------------------a~~~i~~l~~~~p~--~~vGaGTV 76 (216)
T d1mxsa_ 18 RILPVITIAREEDILPLADALA-AGGIRTLEVTLRSQH------------------GLKAIQVLREQRPE--LCVGAGTV 76 (216)
T ss_dssp SEEEEECCSCGGGHHHHHHHHH-HTTCCEEEEESSSTH------------------HHHHHHHHHHHCTT--SEEEEECC
T ss_pred CEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCHH------------------HHHHHHHHHHHCCC--CCEEEEEE
T ss_conf 9799997899999999999999-879988999679806------------------99999999984897--52311001
Q ss_pred CCCCHHHHHHHHHHHHH-----------------------------------------CCCCEEEEECCCCCCCCCCCCC
Q ss_conf 98994689999999997-----------------------------------------5987899963445686678764
Q 005508 475 YFEGKNRIDSLIADIGT-----------------------------------------WGASAVTVHGRTRQQRYSKLAD 513 (693)
Q Consensus 475 ~~e~~~~a~~la~~L~e-----------------------------------------~GvdaItIHgRtr~qryt~~Ad 513 (693)
. + .+-++.+.+ +|++.|-+.+-... --
T Consensus 77 ~--~----~~~~~~a~~aGa~FivsP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~------~g 144 (216)
T d1mxsa_ 77 L--D----RSMFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEIS------GG 144 (216)
T ss_dssp C--S----HHHHHHHHHHTCSSEECSSCCHHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCEEEETTHHHH------TH
T ss_pred E--C----HHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCC------CC
T ss_conf 2--0----8889999867998997899849999999865998648849889999999879997885153223------60
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 9999999998299944999298789887999871399967897
Q 005508 514 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCM 556 (693)
Q Consensus 514 w~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVM 556 (693)
-.|++.++.-+| .++++..||| +.+++.+.+.. .++-.|+
T Consensus 145 ~~~ikal~~p~p-~~~fiptGGV-~~~n~~~yl~~-~~v~avg 184 (216)
T d1mxsa_ 145 VAAIKAFGGPFG-DIRFCPTGGV-NPANVRNYMAL-PNVMCVG 184 (216)
T ss_dssp HHHHHHHHTTTT-TCEEEEBSSC-CTTTHHHHHHS-TTBCCEE
T ss_pred HHHHHHHHCCCC-CCCEECCCCC-CHHHHHHHHHC-CCEEEEE
T ss_conf 999998745124-6846213898-88889999956-8929998
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=84.03 E-value=0.86 Score=19.75 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=96.0
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCC-CHHHH-HHHHCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHCCCCE
Q ss_conf 897939999999990999899165100000028-82344-5330267999199990588-89999999999765189869
Q 005508 348 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG-QASEW-ALLRRHSSEDLFGVQICGA-YPDTLARTVELIDQQCTVDF 424 (693)
Q Consensus 348 t~vtdlpFRrl~~~~Gadl~~TEMv~a~~L~~g-~~~e~-~ll~~h~~e~pigvQL~G~-~pe~~a~AAe~l~~~aG~D~ 424 (693)
.|++++---++|..+|+|++ .|+.+..--+. ..... .+....+... ..|-++.+ +++...+ .+. .+++|.
T Consensus 6 CGit~~ed~~~~~~~gad~i--Gfif~~~SpR~vs~~~a~~i~~~~~~~~-~~V~Vf~~~~~~~i~~---~~~-~~~~d~ 78 (200)
T d1v5xa_ 6 CGITRLEDALLAEALGAFAL--GFVLAPGSRRRIAPEAARAIGEALGPFV-VRVGVFRDQPPEEVLR---LME-EARLQV 78 (200)
T ss_dssp CCCCCHHHHHHHHHHTCSEE--EEECCTTCTTBCCHHHHHHHHHHSCSSS-EEEEEESSCCHHHHHH---HHH-HTTCSE
T ss_pred CCCCCHHHHHHHHHCCCCEE--EEECCCCCCCCCCHHHHHHHHHHHCCCE-EEEEEEEECHHHHHHH---HHC-CCCCCC
T ss_conf 58995999999984799989--9972799998758899889998516750-4332034200666664---311-244443
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 99838899743112774300137938999999984065445779984589989946899999999975987899963445
Q 005508 425 IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTR 504 (693)
Q Consensus 425 IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr 504 (693)
|.||.. ..++.+ +.++. .+|+...++..-....+ .....++++.+.....
T Consensus 79 vQlHg~----------------e~~~~~----~~l~~--~~~iik~~~~~~~~~~~--------~~~~~~~~~L~D~~~~ 128 (200)
T d1v5xa_ 79 AQLHGE----------------EPPEWA----EAVGR--FYPVIKAFPLEGPARPE--------WADYPAQALLLDGKRP 128 (200)
T ss_dssp EEECSC----------------CCHHHH----HHHTT--TSCEEEEEECSSSCCGG--------GGGSSCSEEEEECSST
T ss_pred CCCCCC----------------CCHHHH----HHHHH--CCCCCEEECCCCHHHHH--------HHHCCHHHEEECCCCC
T ss_conf 233346----------------898999----98852--12322464147532587--------7411155336313446
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCC
Q ss_conf 6866787649999999998299944999298789887999871399967897717876289
Q 005508 505 QQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 505 ~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nP 565 (693)
... +..+|++....... ..|++..||| +++.+.+++. .+..||=|..|.=..|
T Consensus 129 g~g--~~~~~~~~~~~~~~---~~~~~LAGGl-~~~Nv~~~~~--~~p~gvDvsSGvE~~~ 181 (200)
T d1v5xa_ 129 GSG--EAYPRAWAKPLLAT---GRRVILAGGI-APENLEEVLA--LRPYALDLASGVEEAP 181 (200)
T ss_dssp TSC--CCCCGGGGHHHHHT---TSCEEECSSC-CSTTHHHHHH--HCCSEEEESGGGEEET
T ss_pred CCC--CCCCHHHHHHHHHC---CCCEEECCCC-CHHHHHHHHH--CCCCEEEECCCEECCC
T ss_conf 753--33664777655541---5744751788-7789999985--6998899758508789
|
| >d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Plasmodium falciparum [TaxId: 5833]
Probab=83.32 E-value=0.92 Score=19.56 Aligned_cols=43 Identities=12% Similarity=0.295 Sum_probs=35.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCCCHHHHHH
Q ss_conf 94499929878988799987139996789771787628970367874
Q 005508 527 DLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573 (693)
Q Consensus 527 ~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPwiF~eIk~ 573 (693)
++||+.-|.| +++.+.+.+.. .++||+.||++.|. +. |.+|-+
T Consensus 201 ~i~ilYGGSV-~~~N~~~i~~~-~~idG~LVG~ASL~-~~-F~~Ii~ 243 (246)
T d1o5xa_ 201 QIRILYGGSV-NTENCSSLIQQ-EDIDGFLVGNASLK-ES-FVDIIK 243 (246)
T ss_dssp HSEEEECSCC-CTTTHHHHHTS-TTCCEEEECGGGGS-TT-HHHHHH
T ss_pred CCCEEEECCC-CHHHHHHHHCC-CCCCEEEEECCCCC-HH-HHHHHH
T ss_conf 6428982898-97599999568-89897996232088-89-999999
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.17 E-value=0.93 Score=19.52 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=57.5
Q ss_pred HHHHHHHHCCCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCH-HHHHHHHHHCCCCC
Q ss_conf 999999840654--457799845899899468999999999759878999634456866787649-99999999829994
Q 005508 452 MKGIIEATSGTV--DKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW-DYIYQCARKASDDL 528 (693)
Q Consensus 452 l~eIikai~~~v--~iPVTVKiR~G~~e~~~~a~~la~~L~e~GvdaItIHgRtr~qryt~~Adw-~~I~~i~~~~~~~I 528 (693)
+.+.++.++... ..++.|-.+. .+-+..+.++|+|.|-+..-+.+ +. +.+..++...+ .+
T Consensus 64 ~~~~~~~~~~~~~~~~~I~VEv~~---------~~e~~~a~~~g~d~i~LDn~~pe-------~~k~~~~~lk~~~~-~i 126 (170)
T d1o4ua1 64 AERAVQEVRKIIPFTTKIEVEVEN---------LEDALRAVEAGADIVMLDNLSPE-------EVKDISRRIKDINP-NV 126 (170)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEESS---------HHHHHHHHHTTCSEEEEESCCHH-------HHHHHHHHHHHHCT-TS
T ss_pred HHHHHHHHHHHCCCCCEEEEEECC---------HHHHHHHHHCCCCEEEECCCCHH-------HHHHHHHHHHHHCC-CE
T ss_conf 788999988517988569997083---------99999988457559998575726-------67679999986089-67
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCCC
Q ss_conf 49992987898879998713999678977178762897
Q 005508 529 QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566 (693)
Q Consensus 529 PVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nPw 566 (693)
.+.++||| +.+.+.++ .. +|+|.+.+|.-...-||
T Consensus 127 ~lEaSGGI-~~~ni~~~-a~-~GVD~Is~g~lt~~a~~ 161 (170)
T d1o4ua1 127 IVEVSGGI-TEENVSLY-DF-ETVDVISSSRLTLQEVF 161 (170)
T ss_dssp EEEEEECC-CTTTGGGG-CC-TTCCEEEEGGGTSSCCC
T ss_pred EEEEECCC-CHHHHHHH-HH-CCCCEEECCCCCCCCCC
T ss_conf 99987899-99999999-97-59999986802269987
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=82.62 E-value=0.97 Score=19.39 Aligned_cols=171 Identities=12% Similarity=0.099 Sum_probs=86.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 99199990588899999999997651898699983889974311277430013793899999998406544577998458
Q 005508 394 EDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRT 473 (693)
Q Consensus 394 e~pigvQL~G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~ 473 (693)
+..+|+=+.-.++ ..++++. .+|||+|=|.+=. | .-+..-+..++.+++.......++=+|+
T Consensus 40 ~~~~G~~~~~~s~----~~~e~~a-~~g~D~v~iD~EH----------g---~~~~~~~~~~i~a~~~~~~~~~~~iVRv 101 (299)
T d1izca_ 40 KTLMGVAHGIPST----FVTKVLA-ATKPDFVWIDVEH----------G---MFNRLELHDAIHAAQHHSEGRSLVIVRV 101 (299)
T ss_dssp GCEEEEEECSCCH----HHHHHHH-HTCCSEEEEETTT----------S---CCCHHHHHHHHHHHHHHTTTCSEEEEEC
T ss_pred CCEEEEECCCCCH----HHHHHHH-CCCCCEEEECCCC----------C---CCCHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 8136420207988----9999997-4998999985788----------9---9999999999999998478999748968
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEC-CC-------------------------CCCCCCCCC----CHHHHHHHHHH
Q ss_conf 9989946899999999975987899963-44-------------------------568667876----49999999998
Q 005508 474 GYFEGKNRIDSLIADIGTWGASAVTVHG-RT-------------------------RQQRYSKLA----DWDYIYQCARK 523 (693)
Q Consensus 474 G~~e~~~~a~~la~~L~e~GvdaItIHg-Rt-------------------------r~qryt~~A----dw~~I~~i~~~ 523 (693)
.+.+ ..+++++.+.|++.|.+=- .| +...|.... +.+|+...-+.
T Consensus 102 p~~~-----~~~I~~~LD~Ga~GIivP~V~s~eea~~~v~~~rypP~G~Rg~~~~~~~~g~~~~~~~~~~~~y~~~~n~~ 176 (299)
T d1izca_ 102 PKHD-----EVSLSTALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNH 176 (299)
T ss_dssp CTTC-----HHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHHHH
T ss_pred CCCC-----HHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 9887-----67999999748684445610659999999984112238975546443100002332245434677640544
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHH----HCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 299944999298789887999871399967897717876----28970367874068999978999999999999998
Q 005508 524 ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGAL----IKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLE 597 (693)
Q Consensus 524 ~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL----~nPwiF~eIk~~~~~d~s~~Erl~il~~~~~~~le 597 (693)
. +-++--=...-.+.+.+++.- .|+|+|+||.+=| .-|.-. ...+....+.++.+.+.++-...
T Consensus 177 ~---~vi~qIEt~~av~nldeI~av-~GVD~ifiGp~DLs~slG~~~~~------~~g~~~~p~v~~ai~~i~~a~k~ 244 (299)
T d1izca_ 177 V---CIIPQIESVKGVENVDAIAAM-PEIHGLMFGPGDYMIDAGLDLNG------ALSGVPHPTFVEAMTKFSTAAQR 244 (299)
T ss_dssp C---EEEEEECSHHHHHTHHHHHTC-TTCCCEEECHHHHHHHTTCCTTC------CTTSCCCHHHHHHHHHHHHHHHH
T ss_pred C---EEEEECCCHHHHHHHHHHHCC-CCCCEEEECCHHHHHHCCCCCCC------CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2---033304789999989998613-56417997325777625898664------55666579999999999999998
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.28 E-value=1 Score=19.30 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=75.5
Q ss_pred CEEEEEEC--CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 91999905--8889999999999765189869998388997431127743001379389999999840654457799845
Q 005508 395 DLFGVQIC--GAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVR 472 (693)
Q Consensus 395 ~pigvQL~--G~~pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR 472 (693)
.++++-|+ ..+++.+.+ ++ .+|+|.+=|||..-.. .......+.++.+....+.|+.+-+-
T Consensus 4 TKIIaTiGPas~~~~~l~~---li--~aGvdv~RlN~SHg~~------------~~~~~~i~~ir~~~~~~~~~~~I~~D 66 (246)
T d1e0ta2 4 TKIVCTIGPKTESEEMLAK---ML--DAGMNVMRLNFSHGDY------------AEHGQRIQNLRNVMSKTGKTAAILLD 66 (246)
T ss_dssp SEEEEECCGGGCSHHHHHH---HH--HHTEEEEEEETTSSCH------------HHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHH---HH--HCCCCEEEEECCCCCH------------HHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7489835888699999999---99--8799999998888999------------99999999999999981999765334
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEECCCCCHH---HHHHHHH
Q ss_conf 8998994689999999997598789996-3445686678764999999999829-994499929878988---7999871
Q 005508 473 TGYFEGKNRIDSLIADIGTWGASAVTVH-GRTRQQRYSKLADWDYIYQCARKAS-DDLQVLGNGDIYSYL---DWNKHKS 547 (693)
Q Consensus 473 ~G~~e~~~~a~~la~~L~e~GvdaItIH-gRtr~qryt~~Adw~~I~~i~~~~~-~~IPVIgNGdI~S~e---Da~~~l~ 547 (693)
+--..-.+.-.+.+....+.|+|+|.+. -|+ ..|...++++..... .+++||+- |-+.+ +..+.+.
T Consensus 67 l~gp~ltekD~~~i~~a~~~~vD~ialSFVr~-------~~Dv~~~r~~l~~~~~~~~~iiaK--IE~~~al~nldeIi~ 137 (246)
T d1e0ta2 67 TKGPALAEKDKQDLIFGCEQGVDFVAASFIRK-------RSDVIEIREHLKAHGGENIHIISK--IENQEGLNNFDEILE 137 (246)
T ss_dssp CCCCSSCHHHHHHHHHHHHHTCSEEEESSCCS-------HHHHHHHHHHHHTTTCTTCEEEEE--ECSHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCC-------HHHHHHHHHHHHHHCCCCCEEEEE--ECCHHHHHCHHHHHH
T ss_conf 45444666731456689873999999848787-------787999999999727777327888--524655535077776
Q ss_pred CCCCCCEEEECHHHHHC
Q ss_conf 39996789771787628
Q 005508 548 DCPELASCMIARGALIK 564 (693)
Q Consensus 548 ~~~gaDgVMIGRGaL~n 564 (693)
. +|||||+||=|.-
T Consensus 138 ~---sDgImIaRGDLg~ 151 (246)
T d1e0ta2 138 A---SDGIMVARGDLGV 151 (246)
T ss_dssp H---SSEEEEEHHHHHH
T ss_pred H---CCEEEEECCCHHH
T ss_conf 4---6668997330111
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=80.28 E-value=1.2 Score=18.85 Aligned_cols=199 Identities=10% Similarity=0.031 Sum_probs=112.4
Q ss_pred EEECCCCCCCC------HHHHHHHHH----CCCC-EEEECCCCCCHHCCCCHHHH-HHH----HCCCCCCEEEEEECCCC
Q ss_conf 88756989793------999999999----0999-89916510000002882344-533----02679991999905888
Q 005508 342 LYLAPLTTVGN------LPFRRVCKV----LGAD-VTCGEMAMCTNLLQGQASEW-ALL----RRHSSEDLFGVQICGAY 405 (693)
Q Consensus 342 l~LAPMt~vtd------lpFRrl~~~----~Gad-l~~TEMv~a~~L~~g~~~e~-~ll----~~h~~e~pigvQL~G~~ 405 (693)
++.|++|-+++ ..+++++.. .|++ +++... ......- ...|. .++ .......++++.+.+.+
T Consensus 7 i~~~~~TPf~~dg~iD~~~l~~~i~~li~~~Gv~gi~v~Gt-tGE~~~L-s~~Er~~l~~~~~~~~~~~~~vi~gv~~~s 84 (293)
T d1f74a_ 7 IFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGS-TGENFML-STEEKKEIFRIAKDEAKDQIALIAQVGSVN 84 (293)
T ss_dssp EEEECCCCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSG-GGTGGGS-CHHHHHHHHHHHHHHHTTSSEEEEECCCSC
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC-CCCHHHC-CHHHHHHHHHEEECCCCCCCCCCCCCCCCC
T ss_conf 24747777989979699999999999998079999998950-7301028-999984443100002467555421245433
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99999999997651898699983889974311277430013793899999998406544577998458998994689999
Q 005508 406 PDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSL 485 (693)
Q Consensus 406 pe~~a~AAe~l~~~aG~D~IDLN~GCP~~~v~~~G~GsaLl~rp~~l~eIikai~~~v~iPVTVKiR~G~~e~~~~a~~l 485 (693)
..+..+.|+.+. .+|+|+|=+ .-|.... -..+-+.+-.+.+.+.+++|+.+---..+. +..-..++
T Consensus 85 ~~~~iela~~a~-~~Gad~i~~--~pP~~~~----------~s~~~~~~~~~~v~~~~~~pi~iYn~P~~t-g~~l~~~~ 150 (293)
T d1f74a_ 85 LKEAVELGKYAT-ELGYDCLSA--VTPFYYK----------FSFPEIKHYYDTIIAETGSNMIVYSIPFLT-GVNMGIEQ 150 (293)
T ss_dssp HHHHHHHHHHHH-HHTCSEEEC--CCCCSSC----------CCHHHHHHHHHHHHHHHCCCEEEECCSSCS-CHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCCEEEC--CCCCCCC----------CCHHHHHHHHHCCCCCCCCEEEEEEECCCE-ECCCCCHH
T ss_conf 788999999999-769997651--5763223----------321999988720234688548998520110-01233213
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHCC
Q ss_conf 99999759878999634456866787649999999998299944999298789887999871399967897717876289
Q 005508 486 IADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKP 565 (693)
Q Consensus 486 a~~L~e~GvdaItIHgRtr~qryt~~Adw~~I~~i~~~~~~~IPVIgNGdI~S~eDa~~~l~~~~gaDgVMIGRGaL~nP 565 (693)
+.+|.+.. ..+.+- . ...|+..+.++....+ +..|+..+|-. +...+. .|++|.+.|-+.+. |
T Consensus 151 l~~L~~~~-~v~giK-------~-~~~~~~~~~~~~~~~~-~~~v~~g~~~~----~~~~~~--~G~~G~i~~~~n~~-P 213 (293)
T d1f74a_ 151 FGELYKNP-KVLGVK-------F-TAGDFYLLERLKKAYP-NHLIWAGFDEM----MLPAAS--LGVDGAIGSTFNVN-G 213 (293)
T ss_dssp HHHHHTST-TEEEEE-------E-CCSCHHHHHHHHHHCT-TSEEEECCGGG----HHHHHH--TTCCEEEESTHHHH-H
T ss_pred HHHHHHCC-CCCCCC-------C-CCCCHHHHHHHHHCCC-CEEEEECCCCC----CCHHHH--CCCCCCCCCCCHHC-C
T ss_conf 55554214-411134-------5-7899999988750589-85999476212----324650--78763444330111-1
Q ss_pred CCHHHHHH
Q ss_conf 70367874
Q 005508 566 WIFTEIKE 573 (693)
Q Consensus 566 wiF~eIk~ 573 (693)
+++.++-+
T Consensus 214 ~~~~~~~~ 221 (293)
T d1f74a_ 214 VRARQIFE 221 (293)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 58999998
|