Citrus Sinensis ID: 005528

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690--
METVEKKAAANANDVVIPIADAKDEYLSSRRSQLSTSKSSASPAHARGADLVEETTQLLTSPAANNNNNNKFTDSTGEVNLESYSDEDEDDVHKDKQKRKILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNPIQETIFHQYLIQTLSGPPLMEINEQVRSEAFGMSAGKEKYLIDVRKLKKIKRQKISAWTMKKLIDVARSSKLSVFSNQLEEFAEEEEDGEDGEIFKNANDKSDEELQMYKSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHWRPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPETQVGSAGSAASPVPQPAN
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHEEEEEccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccHHcHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccEEEEccEEEEEEEEEEEEEEEEEEcccEEEEEccccccccEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccccccccccccc
cccHHHHHcccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccEcHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHccccccEEccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHccccccEEEHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccEEEEcccEEEEEEEEEEEEEEEcccccEEEEccHHHccccEHcccccccccHccEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
METVEKKAAAnandvvipiadakdeylssrrsqlstskssaspahargaDLVEETTQLltspaannnnnnkftdstgevnlesysdededdvhKDKQKRKILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFrhgvkrskeTTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSfqskrffnpiQETIFHQYLIqtlsgpplmeinEQVRseafgmsagkeKYLIDVRKLKKIKRQKISAWTMKKLIDVARSSKLSVFSNQLEefaeeeedgedgeifknandksdEELQMYKSIKSEFEAKSAANYIFKNvadtgcdyigkeQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYvmhpfdvgdrciidGVQMVVEDIRILTTTLvrydnekvfypnsvlatkpitnfyrstgnmkdsvEFTIDASMSTVSIEALKSRIQDYlnskpehwrpqHKVVVKEIEDANKIRMALHVTHTinfqnygekssRRSKLVLQLKRIFEdlgigkyhvlpetqvgsagsaaspvpqpan
metvekkaaanandvvipiaDAKDEYLSSRRsqlstskssaspahaRGADLVEETTQLLtspaannnnnnkftdstGEVNLesysdededdvhkdkqkrkilkkpyVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLfrhgvkrskettkiLNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNPIQETIFHQYLIQTLSGPPLMEINEQVRSeafgmsagkekylidvrKLKKikrqkisawtmkKLIDVARSSKLSVFSNQLEEFaeeeedgedgeifknandksdEELQMYKSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTtlvrydnekvfypnsvlatkpiTNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLnskpehwrpqhKVVVKEIEDANKIRMALHVTHtinfqnygekssrRSKLVLQLKRIFEDLGIGKYHVLPETqvgsagsaaspvpqpan
METVEKKAAANANDVVIPIADAKDEYLssrrsqlstskssasPAHARGADLVEETTQLLTSPAAnnnnnnKFTDSTGEVNLESYSDEDEDDVHKDKQKRKILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNPIQETIFHQYLIQTLSGPPLMEINEQVRSEAFGMSAGKEKYLIDVRKLKKIKRQKISAWTMKKLIDVARSSKLSVFSNQLeefaeeeedgedgeIFKNANDKSDEELQMYKSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGivvvviiilwlilMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHWRPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPETQVGSAGSAASPVPQPAN
****************************************************************************************************ILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNPIQETIFHQYLIQTLSGPPLMEINEQVRSEAFGMSAGKEKYLIDVRKLKKIKRQKISAWTMKKLIDVAR**************************************************KSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHWRPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLP*******************
*********************************************************************************************KDKQKRKILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNPIQETIFHQYLIQTLSGPPL************************************************************EEFAEEEEDGEDGEIFKNA*******************AKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHWRPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPE******************
*********ANANDVVIPIADAKDEY*********************GADLVEETTQLLTSPAANNNNNNKFTDSTGEVNLE****************RKILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNPIQETIFHQYLIQTLSGPPLMEINEQVRSEAFGMSAGKEKYLIDVRKLKKIKRQKISAWTMKKLIDVARSSKLSVFSNQLE**********DGEIFKNANDKSDEELQMYKSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHWRPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPETQV***************
*************DVVIPI*******************************************************************EDEDDVHKDKQKRKILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNPIQETIFHQYLIQTLSGPPLMEINEQV************KYLIDVRKLKKIKRQKISAWTMKKLIDVARSSKLSVFSNQLEEFAEEEEDGEDGEIFKNANDKSDEELQMYKSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHWRPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPET*****************
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METVEKKAAANANDVVIPIADAKDEYLSSRRSQLSTSKSSASPAHARGADLVEETTQLLTSPAANNNNNNKFTDSTGEVNLESYSDEDEDDVHKDKQKRKILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNPIQETIFHQYLIQTLSGPPLMEINEQVRSEAFGMSAGKEKYLIDVRKLKKIKRQKISAWTMKKLIDVARSSKLSVFSNQLEEFAEEEEDGEDGEIFKNANDKSDEELQMYKSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHWRPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPETQVGSAGSAASPVPQPAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query692 2.2.26 [Sep-21-2011]
Q9LYG9734 Mechanosensitive ion chan yes no 0.859 0.810 0.448 1e-152
Q84M97742 Mechanosensitive ion chan no no 0.852 0.795 0.408 1e-134
F4IME2908 Mechanosensitive ion chan no no 0.800 0.610 0.372 1e-113
Q9LPG3881 Mechanosensitive ion chan no no 0.809 0.635 0.366 1e-111
Q9LH74881 Mechanosensitive ion chan no no 0.864 0.678 0.368 1e-110
Q9SYM1856 Mechanosensitive ion chan no no 0.822 0.664 0.366 1e-107
F4IME1849 Mechanosensitive ion chan no no 0.822 0.670 0.359 1e-103
O14050 840 Uncharacterized MscS fami yes no 0.5 0.411 0.220 3e-16
O74839 1011 Uncharacterized MscS fami no no 0.342 0.234 0.258 6e-16
O28726283 Uncharacterized MscS fami yes no 0.183 0.448 0.323 2e-05
>sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1 Back     alignment and function desciption
 Score =  540 bits (1392), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 282/629 (44%), Positives = 410/629 (65%), Gaps = 34/629 (5%)

Query: 61  SPAANNNNNNKFTDSTGEVNLESY---SDEDEDDVHKDKQKRKILKK--PYVLIELAAFG 115
           S A+ NN +N+   S   V         DEDE+   K K  R++  K     LIE A F 
Sbjct: 117 SRASPNNKSNRSVGSPAPVTPSKVVVEKDEDEEIYKKVKLNREMRSKISTLALIESAFFV 176

Query: 116 CIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLR 175
            I++ L+ SLT+  L++H  W  ++WKWCV ++VI S  LVT   +  ++FLIE N  LR
Sbjct: 177 VILSALVASLTINVLKHHTFWGLEVWKWCVLVMVIFSGMLVTNWFMRLIVFLIETNFLLR 236

Query: 176 QRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAA 235
           ++ +Y+VHGL+  ++VF+WL L L+  I LF H VKRS   TK+L  +TR L S L GA 
Sbjct: 237 RKVLYFVHGLKKSVQVFIWLCLILVAWILLFNHDVKRSPAATKVLKCITRTLISILTGAF 296

Query: 236 LWCLKSFSVLLLAVSFQSKRFFNPIQETIFHQYLIQTLSGPPLMEINEQVRSE------- 288
            W +K+  + +LA +F    FF+ IQ+++FHQY++QTLSG PLME  E+V  E       
Sbjct: 297 FWLVKTLLLKILAANFNVNNFFDRIQDSVFHQYVLQTLSGLPLMEEAERVGREPSTGHLS 356

Query: 289 -AFGMSAG--KEKYLIDVRKLKKIKRQKISAWTMKKLIDVARSSKLSVFSNQLEEFAEEE 345
            A  +  G  KEK +ID+ K+ K+KR+K+SAWTM+ L++  R+S LS  S+ L+E A   
Sbjct: 357 FATVVKKGTVKEKKVIDMGKVHKMKREKVSAWTMRVLMEAVRTSGLSTISDTLDETA--- 413

Query: 346 EDGEDGEIFKNANDKSDEELQMYKSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFL 405
                   +    +++D E      I SE EA +AA ++F+NVA    +YI +E L RF+
Sbjct: 414 --------YGEGKEQADRE------ITSEMEALAAAYHVFRNVAQPFFNYIEEEDLLRFM 459

Query: 406 IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTG 465
           I EEV L+   F+GAA+T +I    F +WV+KVY  R+AL+H +  +K A ++LN+L T 
Sbjct: 460 IKEEVDLVFPLFDGAAETGRITRKAFTEWVVKVYTSRRALAHSLNDTKTAVKQLNKLVTA 519

Query: 466 IVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGD 525
           I++VV +++WL+L+   TT+ L+F ++QLV  AF+ G+T KN+FESI+F++VMHP+DVGD
Sbjct: 520 ILMVVTVVIWLLLLEVATTKVLLFFSTQLVALAFIIGSTCKNLFESIVFVFVMHPYDVGD 579

Query: 526 RCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTID 585
           RC++DGV M+VE++ +LTT  ++ +NEKV+YPN+VLATKPI+N++RS  NM ++VEF+I 
Sbjct: 580 RCVVDGVAMLVEEMNLLTTVFLKLNNEKVYYPNAVLATKPISNYFRSP-NMGETVEFSIS 638

Query: 586 ASMSTVSIEALKSRIQDYLNSKPEHWRPQHKVVVKEIEDANKIRMALHVTHTINFQNYGE 645
            S     I  LK RI +YL   P+HW P H VVVKEIE+ NK++MAL+  HTI FQ   E
Sbjct: 639 FSTPVSKIAHLKERIAEYLEQNPQHWAPVHSVVVKEIENMNKLKMALYSDHTITFQENRE 698

Query: 646 KSSRRSKLVLQLKRIFEDLGIGKYHVLPE 674
           ++ RR++L L +KR+ EDL I  Y +LP+
Sbjct: 699 RNLRRTELSLAIKRMLEDLHID-YTLLPQ 726
Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84M97|MSL9_ARATH Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=2 SV=1 Back     alignment and function description
>sp|F4IME2|MSL8_ARATH Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2 Back     alignment and function description
>sp|Q9LPG3|MSL4_ARATH Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1 Back     alignment and function description
>sp|Q9LH74|MSL5_ARATH Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYM1|MSL6_ARATH Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1 Back     alignment and function description
>sp|F4IME1|MSL7_ARATH Mechanosensitive ion channel protein 7 OS=Arabidopsis thaliana GN=MSL7 PE=3 SV=1 Back     alignment and function description
>sp|O14050|YEYH_SCHPO Uncharacterized MscS family protein C2C4.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.17c PE=3 SV=1 Back     alignment and function description
>sp|O74839|YC1B_SCHPO Uncharacterized MscS family protein C1183.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.11 PE=1 SV=1 Back     alignment and function description
>sp|O28726|Y1546_ARCFU Uncharacterized MscS family protein AF_1546 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1546 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query692
225444788772 PREDICTED: uncharacterized protein At5g1 0.911 0.817 0.505 1e-179
297738590644 unnamed protein product [Vitis vinifera] 0.839 0.902 0.529 1e-178
356558409 878 PREDICTED: uncharacterized protein At5g1 0.901 0.710 0.500 1e-176
449452751762 PREDICTED: mechanosensitive ion channel 0.854 0.775 0.515 1e-175
224068408684 predicted protein [Populus trichocarpa] 0.916 0.926 0.491 1e-171
356532770789 PREDICTED: uncharacterized protein At5g1 0.901 0.790 0.496 1e-171
225444790772 PREDICTED: uncharacterized protein At5g1 0.907 0.813 0.488 1e-167
255546009753 conserved hypothetical protein [Ricinus 0.898 0.826 0.469 1e-164
297811331732 mechanosensitive ion channel domain-cont 0.855 0.808 0.449 1e-153
15239859734 mechanosensitive channel of small conduc 0.859 0.810 0.448 1e-151
>gi|225444788|ref|XP_002278293.1| PREDICTED: uncharacterized protein At5g12080-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 340/673 (50%), Positives = 453/673 (67%), Gaps = 42/673 (6%)

Query: 31  RSQLSTSKS----SASPAHARGADLVEETTQLLTSPAANNNNNNKFTDSTGEVNLESYSD 86
           ++QL  S S    SASP H+  A    +  +  T+PA              E + + Y  
Sbjct: 123 KTQLLPSNSPIADSASPVHSLTATTPRDNVR--TAPATPRTPL-VLDGEDEEEDDDVYKT 179

Query: 87  EDEDDVHKDKQKRKILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVF 146
            +  ++ K+ ++ + +    + +E  AF CIM  LI SLTV +L + +IW  ++WKW V 
Sbjct: 180 SNSPEIEKNSKRLRFV----LWVEWIAFVCIMGCLIASLTVHRLLHTLIWGLEIWKWSVL 235

Query: 147 LLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFLF 206
           +LVI   RLVT+  IN ++F+IERN  LR++ +Y+V+GL+  + VF+WL L LL    L 
Sbjct: 236 VLVIFCGRLVTEWCINIVVFMIERNFLLRKKVLYFVYGLKKSVLVFIWLGLILLAWGLLI 295

Query: 207 RHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNPIQETIFH 266
             GVKRS++ T+ILNYVTR LAS L+GAA+W  K+  V +LA SF   RFF+ IQE+IFH
Sbjct: 296 NRGVKRSRKATRILNYVTRALASCLIGAAIWLAKTLLVKILASSFHVTRFFDRIQESIFH 355

Query: 267 QYLIQTLSGPPLMEINEQV----------RSEAFGMSAGKEKYLIDVRKLKKIKRQKISA 316
           QY++QTLSGPPLM + E V          RS   G    KE+ +IDV KL KIK++K+SA
Sbjct: 356 QYVLQTLSGPPLMAMAEMVGSVNSAQLSFRSTKRGKGGEKEE-VIDVGKLHKIKQEKVSA 414

Query: 317 WTMKKLIDVARSSKLSVFSNQLEEFAEEEEDGEDGEIFKNANDKSDEELQMYKSIKSEFE 376
           WTMK LI V R S L+  SN L++      D + GE             Q  K I +E+E
Sbjct: 415 WTMKGLIQVIRGSGLTTISNALDDSV----DDDGGE-------------QKDKEITNEWE 457

Query: 377 AKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVL 436
           A++AA+ IF NVA     +I +E L RF+  EEV  +L  FEGA++T KI+    KKWV+
Sbjct: 458 ARNAASRIFMNVAKPCTKHIDEEDLLRFMKKEEVDNVLPLFEGASETRKIKRSSLKKWVV 517

Query: 437 KVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVL 496
            VY ERK+L+H +  +K A +ELN++ +G++++VIII+WL+LMGF TT  LVFI+SQL+L
Sbjct: 518 NVYLERKSLAHSLNDTKTAIEELNKIASGVMLIVIIIVWLLLMGFATTNVLVFISSQLLL 577

Query: 497 AAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFY 556
            AFMFGNT K +FE+IIF++VMHPFDVGDRC+IDGVQMVVE++ ILTT  +RYDNEK+FY
Sbjct: 578 VAFMFGNTCKTVFEAIIFVFVMHPFDVGDRCVIDGVQMVVEEMNILTTIFLRYDNEKIFY 637

Query: 557 PNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHWRPQHK 616
           PNSVLATKPI+NFYRS   M DSVEF +D S S  +I ALK+RI+ YL SKP+HWRP H 
Sbjct: 638 PNSVLATKPISNFYRSP-EMSDSVEFAVDFSTSMETIAALKARIKTYLESKPQHWRPGHS 696

Query: 617 VVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLP-ET 675
           V+VK+I D N++ M L+VTHTINFQNYG+KSSRRS+LV++LK+IFE+L I KYH+LP E 
Sbjct: 697 VLVKDIVDVNQMNMGLYVTHTINFQNYGDKSSRRSELVIELKKIFEELNI-KYHLLPQEV 755

Query: 676 QVGSAGSAASPVP 688
            V S  SA    P
Sbjct: 756 HVRSVDSAPPVFP 768

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738590|emb|CBI27835.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558409|ref|XP_003547499.1| PREDICTED: uncharacterized protein At5g12080-like [Glycine max] Back     alignment and taxonomy information
>gi|449452751|ref|XP_004144122.1| PREDICTED: mechanosensitive ion channel protein 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224068408|ref|XP_002326113.1| predicted protein [Populus trichocarpa] gi|222833306|gb|EEE71783.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356532770|ref|XP_003534944.1| PREDICTED: uncharacterized protein At5g12080-like [Glycine max] Back     alignment and taxonomy information
>gi|225444790|ref|XP_002278315.1| PREDICTED: uncharacterized protein At5g12080 [Vitis vinifera] gi|297738591|emb|CBI27836.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546009|ref|XP_002514064.1| conserved hypothetical protein [Ricinus communis] gi|223546520|gb|EEF48018.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297811331|ref|XP_002873549.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319386|gb|EFH49808.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15239859|ref|NP_196769.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|30683939|ref|NP_850810.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|186522320|ref|NP_001119212.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|75181076|sp|Q9LYG9.1|MSL10_ARATH RecName: Full=Mechanosensitive ion channel protein 10; AltName: Full=Mechanosensitive channel of small conductance-like 10; AltName: Full=MscS-Like protein 10; Short=AtMSL10 gi|7573373|emb|CAB87679.1| putative protein [Arabidopsis thaliana] gi|9759375|dbj|BAB10026.1| unnamed protein product [Arabidopsis thaliana] gi|18700073|gb|AAL77649.1| AT5g12080/MXC9_3 [Arabidopsis thaliana] gi|25090179|gb|AAN72247.1| At5g12080/MXC9_3 [Arabidopsis thaliana] gi|227204347|dbj|BAH57025.1| AT5G12080 [Arabidopsis thaliana] gi|332004376|gb|AED91759.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|332004377|gb|AED91760.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|332004378|gb|AED91761.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query692
TAIR|locus:2143069734 MSL10 "mechanosensitive channe 0.823 0.776 0.444 1.7e-130
TAIR|locus:2180811742 MSL9 "mechanosensitive channel 0.823 0.768 0.411 1.5e-119
TAIR|locus:2099382881 MSL5 "mechanosensitive channel 0.475 0.373 0.420 1.5e-106
TAIR|locus:2024927881 MSL4 "mechanosensitive channel 0.471 0.370 0.412 1.7e-103
TAIR|locus:2202965856 MSL6 "mechanosensitive channel 0.434 0.351 0.438 4.1e-102
TAIR|locus:2827671849 AT2G17000 "AT2G17000" [Arabido 0.463 0.378 0.410 1.3e-101
DICTYBASE|DDB_G0277253870 DDB_G0277253 "mechanosensitive 0.362 0.288 0.236 1.8e-24
UNIPROTKB|G4NH50 952 MGG_03937 "Serine/threonine pr 0.723 0.526 0.245 9.5e-22
ASPGD|ASPL0000007479 943 AN6053 [Emericella nidulans (t 0.365 0.268 0.273 5.1e-19
ASPGD|ASPL0000069490 944 AN7571 [Emericella nidulans (t 0.447 0.328 0.208 6.4e-16
TAIR|locus:2143069 MSL10 "mechanosensitive channel of small conductance-like 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
 Identities = 267/601 (44%), Positives = 386/601 (64%)

Query:    86 DEDEDDVHKDKQKRKILKK--PYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKW 143
             DEDE+   K K  R++  K     LIE A F  I++ L+ SLT+  L++H  W  ++WKW
Sbjct:   145 DEDEEIYKKVKLNREMRSKISTLALIESAFFVVILSALVASLTINVLKHHTFWGLEVWKW 204

Query:   144 CVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRI 203
             CV ++VI S  LVT   +  ++FLIE N  LR++ +Y+VHGL+  ++VF+WL L L+  I
Sbjct:   205 CVLVMVIFSGMLVTNWFMRLIVFLIETNFLLRRKVLYFVHGLKKSVQVFIWLCLILVAWI 264

Query:   204 FLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNPIQET 263
              LF H VKRS   TK+L  +TR L S L GA  W +K+  + +LA +F    FF+ IQ++
Sbjct:   265 LLFNHDVKRSPAATKVLKCITRTLISILTGAFFWLVKTLLLKILAANFNVNNFFDRIQDS 324

Query:   264 IFHQYLIQTLSGPPLMEINEQVRSE------AFG--MSAG--KEKYLIDVRKLKKIKRQK 313
             +FHQY++QTLSG PLME  E+V  E      +F   +  G  KEK +ID+ K+ K+KR+K
Sbjct:   325 VFHQYVLQTLSGLPLMEEAERVGREPSTGHLSFATVVKKGTVKEKKVIDMGKVHKMKREK 384

Query:   314 ISAWTMKKLIDVARSSKLSVFSNQLXXXXXXXXXXXXXXIFKNANDKSDEELQMYKSIKS 373
             +SAWTM+ L++  R+S LS  S+ L               +    +++D E      I S
Sbjct:   385 VSAWTMRVLMEAVRTSGLSTISDTLDETA-----------YGEGKEQADRE------ITS 427

Query:   374 EFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKK 433
             E EA +AA ++F+NVA    +YI +E L RF+I EEV L+   F+GAA+T +I    F +
Sbjct:   428 EMEALAAAYHVFRNVAQPFFNYIEEEDLLRFMIKEEVDLVFPLFDGAAETGRITRKAFTE 487

Query:   434 WVLKVYNERKALSHFIKQSKAATQELNRLFTGXXXXXXXXXXXXXMGFLTTQALVFITSQ 493
             WV+KVY  R+AL+H +  +K A ++LN+L T              +   TT+ L+F ++Q
Sbjct:   488 WVVKVYTSRRALAHSLNDTKTAVKQLNKLVTAILMVVTVVIWLLLLEVATTKVLLFFSTQ 547

Query:   494 LVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEK 553
             LV  AF+ G+T KN+FESI+F++VMHP+DVGDRC++DGV M+VE++ +LTT  ++ +NEK
Sbjct:   548 LVALAFIIGSTCKNLFESIVFVFVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNEK 607

Query:   554 VFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHWRP 613
             V+YPN+VLATKPI+N++RS  NM ++VEF+I  S     I  LK RI +YL   P+HW P
Sbjct:   608 VYYPNAVLATKPISNYFRSP-NMGETVEFSISFSTPVSKIAHLKERIAEYLEQNPQHWAP 666

Query:   614 QHKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLP 673
              H VVVKEIE+ NK++MAL+  HTI FQ   E++ RR++L L +KR+ EDL I  Y +LP
Sbjct:   667 VHSVVVKEIENMNKLKMALYSDHTITFQENRERNLRRTELSLAIKRMLEDLHID-YTLLP 725

Query:   674 E 674
             +
Sbjct:   726 Q 726
GO:0005634 "nucleus" evidence=ISM
GO:0016020 "membrane" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0008381 "mechanically-gated ion channel activity" evidence=IDA;IMP
GO:0050982 "detection of mechanical stimulus" evidence=IMP
GO:0006820 "anion transport" evidence=IDA
TAIR|locus:2180811 MSL9 "mechanosensitive channel of small conductance-like 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099382 MSL5 "mechanosensitive channel of small conductance-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024927 MSL4 "mechanosensitive channel of small conductance-like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202965 MSL6 "mechanosensitive channel of small conductance-like 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827671 AT2G17000 "AT2G17000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277253 DDB_G0277253 "mechanosensitive ion channel domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4NH50 MGG_03937 "Serine/threonine protein kinase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007479 AN6053 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000069490 AN7571 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LYG9MSL10_ARATHNo assigned EC number0.44830.85980.8106yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query692
pfam00924202 pfam00924, MS_channel, Mechanosensitive ion channe 5e-20
COG0668316 COG0668, MscS, Small-conductance mechanosensitive 2e-16
>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel Back     alignment and domain information 
 Score = 88.4 bits (220), Expect = 5e-20
 Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 462 LFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPF 521
            +  IVV ++I+L  + +      A +     L L  F   + V N+   II L+   PF
Sbjct: 3   KYLIIVVGILIVLSYLGVNVSALLAGLGALG-LALG-FALQDLVSNLVSGIIILF-EKPF 59

Query: 522 DVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVE 581
            +GD   I  V+  VEDI I +TT+  +D   V  PNS + T  I N    +   +  V 
Sbjct: 60  KIGDWIEIGDVEGTVEDIGIRSTTIRTFDGRLVTIPNSKILTSNIIN-LSRSPTRRVEVS 118

Query: 582 FTIDASMSTVSIEALKSRIQDYLNSKPE-HWRPQHKVVVKEIEDANKIRMALHVTHTINF 640
             +  S     +E +   +++     P     P+  VV  E  D+        +   +  
Sbjct: 119 IGVAYSSDPKKLEKVIEILKEAAYEHPLVLKDPEPPVVFGEFGDS-------SLNFEVRV 171

Query: 641 ---QNYGEKSSRRSKLVLQLKRIFEDLGIG 667
                 GE  + RS+L L++K+  E+ GI 
Sbjct: 172 WVKTLPGEYFNVRSELNLRIKKALEENGIE 201

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202
>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 692
KOG4629714 consensus Predicted mechanosensitive ion channel [ 100.0
PRK10334286 mechanosensitive channel MscS; Provisional 100.0
PRK112811113 hypothetical protein; Provisional 100.0
PF00924206 MS_channel: Mechanosensitive ion channel; InterPro 100.0
PRK109291109 putative mechanosensitive channel protein; Provisi 100.0
PRK11465741 putative mechanosensitive channel protein; Provisi 99.97
COG0668316 MscS Small-conductance mechanosensitive channel [C 99.97
COG3264835 Small-conductance mechanosensitive channel [Cell e 99.96
smart0002796 EH Eps15 homology domain. Pair of EF hand motifs t 93.9
cd0005267 EH Eps15 homology domain; found in proteins implic 93.46
COG5126160 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S 93.04
cd0502289 S-100A13 S-100A13: S-100A13 domain found in protei 92.99
KOG0044193 consensus Ca2+ sensor (EF-Hand superfamily) [Signa 92.96
PF1349966 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 92.59
cd0502693 S-100Z S-100Z: S-100Z domain found in proteins sim 92.44
PF0003629 EF-hand_1: EF hand; InterPro: IPR018248 Many calci 92.36
cd0502988 S-100A6 S-100A6: S-100A6 domain found in proteins 91.64
cd0502592 S-100A1 S-100A1: S-100A1 domain found in proteins 90.9
cd0502389 S-100A11 S-100A11: S-100A11 domain found in protei 90.81
cd0021388 S-100 S-100: S-100 domain, which represents the la 90.07
cd0503088 calgranulins Calgranulins: S-100 domain found in p 89.53
PF1383354 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 88.6
cd0005163 EFh EF-hand, calcium binding motif; A diverse supe 87.8
cd0503194 S-100A10_like S-100A10_like: S-100A10 domain found 86.95
KOG0027151 consensus Calmodulin and related proteins (EF-Hand 86.85
PTZ00183158 centrin; Provisional 86.47
PRK12309391 transaldolase/EF-hand domain-containing protein; P 86.02
PTZ00184149 calmodulin; Provisional 84.82
KOG0034187 consensus Ca2+/calmodulin-dependent protein phosph 83.82
KOG0028172 consensus Ca2+-binding protein (centrin/caltractin 83.75
cd0502788 S-100B S-100B: S-100B domain found in proteins sim 82.29
PTZ00184149 calmodulin; Provisional 81.86
PLN02964 644 phosphatidylserine decarboxylase 81.44
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-96  Score=834.85  Aligned_cols=556  Identities=40%  Similarity=0.691  Sum_probs=517.4

Q ss_pred             HHhhhhccchHHHHHHHHHHHHHHHHhheeeeeccccceeeehhhHHHHHHHHHHHHHHHHHhHhhhhhhheeeeccccc
Q 005528           96 KQKRKILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLR  175 (692)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~i~~~~~~~~~~~~lw~w~~~~lv~~~g~lva~w~~~~~vfli~~~~~~~  175 (692)
                      +.++-++ ++..+++|+.+++++++++|++.|.......+|++..|+|++.++|.+||+|++.|.+.+++|+++.|++.+
T Consensus       140 ~~~~~~~-~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv~~~~~~~vvf~~~~n~~~r  218 (714)
T KOG4629|consen  140 ETRRSLL-SSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLVSSWFAALVVFLIESNFLRR  218 (714)
T ss_pred             hhhhccc-ccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHHHhhHHHHHHHHhhhhHHHH
Confidence            3344556 799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeehhhhhHHHHHHHHH-HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005528          176 QRFMYYVHGLRIIIRVFVWLS-LFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSK  254 (692)
Q Consensus       176 kk~ly~v~~l~~~~~~~~W~~-~~l~~~~~l~~~~~~~~~~~~~~~~~v~~vL~~~~v~~~~~l~~~~lvq~ia~sfH~~  254 (692)
                      ++|+||++|+++.+|.|+|++ +++++|..+|+..+.+..... .+.+++++ +|+++++..|++||+++|++|++||++
T Consensus       219 ~~~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~-~l~~~~~~-i~lli~~~~~lv~ti~~kv~as~f~~s  296 (714)
T KOG4629|consen  219 KKVLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAK-FLAFVTML-ITLLITEFMWLVKTILMKVIASSFHRS  296 (714)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhh-hhhhhhhh-hhhhHHHHHhhchhhhhHHHHHHHhHH
Confidence            999999999999999999999 999999999999887654444 88899999 999999999999999999999999999


Q ss_pred             hhhhhHHhhhhhHHHHHHhcCCCchhhhhhcccccc-------CCCccccccccchHHHHhhhhcccchhhHHHHHhhhh
Q 005528          255 RFFNPIQETIFHQYLIQTLSGPPLMEINEQVRSEAF-------GMSAGKEKYLIDVRKLKKIKRQKISAWTMKKLIDVAR  327 (692)
Q Consensus       255 ~~~~RI~es~~~~~~L~~L~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~l~~~~~~~~sa~~~~~l~~~v~  327 (692)
                      +|++||||++|+||+|++||++|..|   ..||...       +....++. .++++++|+++..+.|+|+|+++++.++
T Consensus       297 ~~~~rI~e~~f~q~~l~~Lsg~p~~e---~~gr~s~~~~~~s~~~~r~~s~-~i~~~~l~~~~~~~~sa~~~~~~~~~~~  372 (714)
T KOG4629|consen  297 TYFSRIQESVFTQEVLETLSGPPREE---DVGRESTFRAIFSPGLSRSGSA-KIGMDKLHKIKKKNVSAWNMRRLMTILA  372 (714)
T ss_pred             HHHhhcchhhhhHHHHHHhcCCcccc---cccccccceeeccccccchhhc-ccccchhhhhhHhhhcHhhhhHHHHHHh
Confidence            99999999999999999999999722   3555321       11112222 2788999999999999999999999999


Q ss_pred             ccccccchhhhhhhhcccccCCcccccccCCCchhHHHhhhccCCCHHHHHHHHHHHhhcccccCccccchhhHhhhcCH
Q 005528          328 SSKLSVFSNQLEEFAEEEEDGEDGEIFKNANDKSDEELQMYKSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIA  407 (692)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~i~s~~~A~~lAr~If~~~~~~g~~~l~~eDl~~f~~~  407 (692)
                      ..++++++........  .+.                  ...+++|+.+|+++|++||++++.||..++++||+.+|+++
T Consensus       373 ~~~~t~l~~~~~~s~~--~~~------------------~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~f~~~  432 (714)
T KOG4629|consen  373 AGGLTTLSPGFQLSTS--KDS------------------SIIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLRFMGD  432 (714)
T ss_pred             ccCcccCCcccccccc--ccc------------------hhhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhhcCCH
Confidence            9999998876544221  000                  13478999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHhhhHhhhcCcchhHHH
Q 005528          408 EEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQAL  487 (692)
Q Consensus       408 eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~~eRk~L~~sl~D~~t~v~~L~~il~~iv~ii~iii~L~ilgi~~t~lL  487 (692)
                      |+|+.+|++|++..+.+ |+++.+++|++++|+||++|+++++|+++++++|++++.+++.++++++++..+|+++++++
T Consensus       433 E~a~~~~slfe~~~~~~-Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l  511 (714)
T KOG4629|consen  433 EEAERAFSLFEGASDEN-ITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLL  511 (714)
T ss_pred             HHHHHHHHhhhhhcccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeee
Confidence            99999999999985666 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCcCCCCEEEECCeEEEEEEEEeeEEEEEeeCCcEEEEeCccccCCcEE
Q 005528          488 VFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPIT  567 (692)
Q Consensus       488 a~~gs~~LalsFafq~t~~n~f~S~IFLfv~hPFdVGDrV~Idg~~G~VeeI~Ll~Tvf~~~DG~~V~IPNS~L~t~~I~  567 (692)
                      +..+++.++++|+|+++++++|+|+||+|+.|||||||||.|||+++.|+||+|++|+|.++||+++++|||.|++++|.
T Consensus       512 ~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~  591 (714)
T KOG4629|consen  512 LVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAIS  591 (714)
T ss_pred             eeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEeceEEEEEEeccceEEEEEECCeEEEeecHHHHhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCceEEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCcCCCcEEEEEEeCCCceEEEEEEEEEeccccCcccHH
Q 005528          568 NFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHWRPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKS  647 (692)
Q Consensus       568 N~sRS~~~~~~~i~~~V~~~T~~ekI~~Lk~~I~~~l~~~~~~~~p~~~v~v~~i~d~~~l~l~v~v~~~~N~qn~~~~~  647 (692)
                      |++||+ .|.+.+++.++..|+++|+++|+++|.+|++++|.+|+|++.+.+.++++.|++.+.+|+.|++||||.+++|
T Consensus       592 N~rRS~-~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~~~p~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~  670 (714)
T KOG4629|consen  592 NYRRSP-DMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDDYYPDLMVVIEEIEDLNSVKICVVVQHKINFQDMKERW  670 (714)
T ss_pred             hhhcCc-cccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccccccchhhHHHhhhhcCcceEEEEEEeecchhhHHHHH
Confidence            999999 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCcCCCCcccc-cccCC
Q 005528          648 SRRSKLVLQLKRIFEDLGIGKYHVLPETQ-VGSAG  681 (692)
Q Consensus       648 ~rRs~l~~~I~~~l~e~gI~~y~~P~q~v-v~~~~  681 (692)
                      .||.+++.++.+.++|+|| +|.++|+++ +.+.+
T Consensus       671 ~Rr~~~~~~l~~~~~eLdI-~y~l~p~~in~~~~~  704 (714)
T KOG4629|consen  671 SRRTEFVSALTKIMRELDI-EYTLYPLDINLKNLP  704 (714)
T ss_pred             hhHHHHHHHHHHHHHHcCc-ceeecCcchhhhcCC
Confidence            9999999999999999999 999999999 77776

>PRK10334 mechanosensitive channel MscS; Provisional Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PRK11465 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>smart00027 EH Eps15 homology domain Back     alignment and domain information
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction Back     alignment and domain information
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only] Back     alignment and domain information
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13 Back     alignment and domain information
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms] Back     alignment and domain information
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E Back     alignment and domain information
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z Back     alignment and domain information
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand Back     alignment and domain information
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6 Back     alignment and domain information
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1 Back     alignment and domain information
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11 Back     alignment and domain information
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif Back     alignment and domain information
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 Back     alignment and domain information
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A Back     alignment and domain information
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands Back     alignment and domain information
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10 Back     alignment and domain information
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00183 centrin; Provisional Back     alignment and domain information
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional Back     alignment and domain information
>PTZ00184 calmodulin; Provisional Back     alignment and domain information
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B Back     alignment and domain information
>PTZ00184 calmodulin; Provisional Back     alignment and domain information
>PLN02964 phosphatidylserine decarboxylase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query692
2vv5_A286 MSCS, small-conductance mechanosensitive channel; 3e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286 Back     alignment and structure
 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 41/236 (17%), Positives = 92/236 (38%), Gaps = 17/236 (7%)

Query: 433 KWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITS 492
           + +       + +    K        L+ L    ++   +I  L  +G  T   +  + +
Sbjct: 46  RMISNAV--NRLMISR-KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA 102

Query: 493 QLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNE 552
             ++       ++ N   + + L +  PF  G+   + GV   V  ++I +TT+   D +
Sbjct: 103 AGLVVGLALQGSLSN-LAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGK 161

Query: 553 KVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPE-HW 611
            +  PN  +    I NF   +       EF I  +  +  I+ +K  + + + S+     
Sbjct: 162 IIVIPNGKIIAGNIINF---SREPVRRNEFIIGVAYDS-DIDQVKQILTNIIQSEDRILK 217

Query: 612 RPQHKVVVKEIEDANKIRMALHV-THTINFQNYGEKSSRRSKLVLQLKRIFEDLGI 666
             +  V + E+   + I   + V +++ + QN          ++ ++KR F+  GI
Sbjct: 218 DREMTVRLNELGA-SSINFVVRVWSNSGDLQNV------YWDVLERIKREFDAAGI 266
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 692
d2vv5a167 b.38.1.3 (A:113-179) Mechanosensitive channel prot 3e-15
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 68.6 bits (168), Expect = 3e-15
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 504 TVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLAT 563
           ++ N+  + + L +  PF  G+   + GV   V  ++I +TT+   D + +  PN  +  
Sbjct: 2   SLSNLA-AGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIA 60

Query: 564 KPITNF 569
             I NF
Sbjct: 61  GNIINF 66

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query692
d2vv5a167 Mechanosensitive channel protein MscS (YggB), midd 99.59
d2vv5a2101 Mechanosensitive channel protein MscS (YggB), C-te 98.98
d2vv5a386 Mechanosensitive channel protein MscS (YggB), tran 97.69
d1g8ia_187 Frequenin (neuronal calcium sensor 1) {Human (Homo 94.97
d1tiza_67 Calmodulin-related protein T21P5.17 {Thale cress ( 94.85
d1fpwa_190 Frequenin (neuronal calcium sensor 1) {Baker's yea 94.27
d1xo5a_180 Calcium- and integrin-binding protein, CIB {Human 93.78
d2sasa_185 Sarcoplasmic calcium-binding protein {Amphioxus (B 93.7
d1c7va_68 Calcium vector protein {Amphioxus (Branchiostoma l 93.48
d2scpa_174 Sarcoplasmic calcium-binding protein {Sandworm (Ne 93.42
d1qv0a_189 Calcium-regulated photoprotein {Hydrozoa (Obelia l 93.41
d1nyaa_176 Calerythrin {Saccharopolyspora erythraea [TaxId: 1 92.78
d1pvaa_109 Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} 92.66
d2pq3a173 Calmodulin {Rattus norvegicus [TaxId: 10116]} 92.56
d2opoa181 Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta 92.31
d1uhka1187 Calcium-regulated photoprotein {Jellyfish (Aequore 92.29
d1rroa_108 Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116 92.23
d1jfja_134 EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 92.06
d1bjfa_181 Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} 92.01
d1c07a_95 Eps15 {Human (Homo sapiens) [TaxId: 9606]} 91.87
d1s6ca_178 Kchip1, Kv4 potassium channel-interacting protein 91.83
d1fi6a_92 Reps1 {Mouse (Mus musculus) [TaxId: 10090]} 91.83
d2zfda1183 Calcineurin B-like protein 2 {Thale cress (Arabido 91.79
d1dtla_156 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 91.77
d5pala_109 Parvalbumin {Leopard shark (Triakis semifasciata) 91.68
d1oqpa_77 Caltractin (centrin 2) {Green algae (Chlamydomonas 91.52
d1fi5a_81 Troponin C {Chicken (Gallus gallus), cardiac isofo 91.38
d1qjta_99 Eps15 {Mouse (Mus musculus) [TaxId: 10090]} 91.37
d1exra_146 Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI 91.27
d1rwya_109 Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} 91.15
d1omra_201 Recoverin {Cow (Bos taurus) [TaxId: 9913]} 91.08
d1avsa_81 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 90.98
d1jc2a_75 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 90.7
d1g8ia_187 Frequenin (neuronal calcium sensor 1) {Human (Homo 90.61
d1jbaa_189 Guanylate cyclase activating protein 2, GCAP-2 {Co 90.52
d2jxca195 Eps15 {Human (Homo sapiens) [TaxId: 9606]} 90.3
d1omra_201 Recoverin {Cow (Bos taurus) [TaxId: 9913]} 90.2
d1lkja_146 Calmodulin {Baker's yeast (Saccharomyces cerevisia 89.92
d2pvba_107 Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} 89.76
d1m45a_146 Myosin Light Chain Mlc1p {Baker's yeast (Saccharom 89.65
d1iq3a_110 Pob1 {Human (Homo sapiens) [TaxId: 9606]} 89.55
d1bjfa_181 Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} 89.37
d1topa_162 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 89.28
d1f54a_77 Calmodulin {Baker's yeast (Saccharomyces cerevisia 88.73
d1jfja_134 EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 88.72
d1fw4a_65 Calmodulin {Cow (Bos taurus) [TaxId: 9913]} 88.65
d2obha1141 Calmodulin {Human (Homo sapiens) [TaxId: 9606]} 88.54
d2hf5a133 Troponin C {Human (Homo sapiens), cardiac isoform 88.32
d1auib_165 Calcineurin regulatory subunit (B-chain) {Human (H 87.99
d1wrka182 Troponin C {Human (Homo sapiens), cardiac isoform 87.74
d3c1va193 Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta 87.05
d1k94a_165 Grancalcin {Human (Homo sapiens) [TaxId: 9606]} 86.95
d1snla_99 Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax 86.79
d2mysb_145 Myosin Essential Chain {Chicken (Gallus gallus) [T 86.76
d1fpwa_190 Frequenin (neuronal calcium sensor 1) {Baker's yea 86.66
d1a4pa_92 Calcyclin (S100) {Human (Homo sapiens), P11 s100a1 86.65
d1ksoa_93 Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta 85.83
d1alva_173 Calpain small (regulatory) subunit (domain VI) {Pi 84.87
d2zfda1183 Calcineurin B-like protein 2 {Thale cress (Arabido 84.32
d1wdcc_152 Myosin Regulatory Chain {Bay scallop (Aequipecten 84.21
d1auib_165 Calcineurin regulatory subunit (B-chain) {Human (H 83.34
d2fcea161 Calmodulin {Cow (Bos taurus) [TaxId: 9913]} 83.25
d1s6ja_87 Calcium-dependent protein kinase sk5 CLD {Soybean 82.41
d1hqva_181 Apoptosis-linked protein alg-2 {Mouse (Mus musculu 82.37
d1y1xa_182 Programmed cell death 6 protein-like protein {Leis 81.98
d1s6ca_178 Kchip1, Kv4 potassium channel-interacting protein 81.64
d1wlza183 DJ-1-binding protein, DJBP {Human (Homo sapiens) [ 81.64
d1wdcb_142 Myosin Essential Chain {Bay scallop (Aequipecten i 81.45
d1yuta198 Calcyclin (S100) {Human (Homo sapiens), s100a13 [T 80.6
d1s6ia_182 Calcium-dependent protein kinase sk5 CLD {Soybean 80.09
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=7.8e-16  Score=120.89  Aligned_cols=67  Identities=25%  Similarity=0.449  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEEEEEEEEEEEEECCCEEEEECCCCCCCCEEEEC
Q ss_conf             67989998987875418847898899889589999997659999952890999858645577589312
Q 005528          503 NTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFY  570 (692)
Q Consensus       503 ~ti~nif~s~IFIfv~hPFdVGDrV~Idg~~G~VeeI~LlsT~f~~~dg~~V~IPNS~L~t~~I~N~s  570 (692)
                      ++++|++ |++++++++||++||||+++|..|+|++|+|++|++++.||+.+++||+.+.++.|.|||
T Consensus         1 GtlsN~~-sGi~i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           1 GSLSNLA-AGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHH-HHHHHHTTCSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             CCHHHHH-HHHHHEEECCCCCCCEEEECCEEEEEEEEECEEEEEECCCCCEEEEECHHHCCCCCEECC
T ss_conf             9479999-885610407832899999999899999995439999914998999988897088439795
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Back     information, alignment and structure
>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Back     information, alignment and structure
>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]} Back     information, alignment and structure
>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]} Back     information, alignment and structure
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]} Back     information, alignment and structure
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Back     information, alignment and structure
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]} Back     information, alignment and structure
>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]} Back     information, alignment and structure
>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]} Back     information, alignment and structure
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]} Back     information, alignment and structure
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Back     information, alignment and structure
>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]} Back     information, alignment and structure
>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Back     information, alignment and structure
>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]} Back     information, alignment and structure
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Back     information, alignment and structure
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Back     information, alignment and structure
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]} Back     information, alignment and structure
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]} Back     information, alignment and structure
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]} Back     information, alignment and structure
>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]} Back     information, alignment and structure
>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure