Citrus Sinensis ID: 005549

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-

MALLTSKNIWMRRQQCPCGDWKCYVSHEGDSEETSVASQLAKNDENSLNESMVAPYVGMVFKSDDDAFEYYGNFARKSGFSVRKERSRLSPQLGVYKRDFVCYRSGFAPMRKKPGGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRNFVQNRRRAVQENDALLTEKRETDTMELLDICKATNETDEYFVYDFTVDENNKVENIAWSFPGSIHAYAMLGDVVYFDTTYRSITYGLIFGAWLGIDSNGRTILFGVALLQDETLRSFAWALQTFVHFMKGRCPKTILTDLDPGLGDAIRSALPNTRHVISVCNILPKLSGWFSLLLGSQFSEFKSEFDALCHVESTEDFELQWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIFAAQTCLRSFFEQVGIFSNLQNQPRQEMQYMHMKTCIPIEEQARRTLTPFAFNAFQRELVLAMQYSASELANGTYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFESSGIPCRHAFRVFITKNYFQLPEKYFPSRWLRESSLAFFYDHDAQQNEEWIQEFHSLTERLFAESSITKERSDYIRKELTKELTRLLNEVRDMPESDGIAMDFTLSPTD

cccccccccHHHHHcccccccccccccccccccccHHHHccccccccccccccccccccEEccHHHHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEEccccccccccccccccccccccccccccEEEEEEEEEEccEEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHccHHHHHHccccccccHHHHHHHccccHHHHHHHHHHcccccccEEEEEEEcccccEEEEEEcccccHHHHHHccEEEEEEccccccccccEEEEEEEEEcccccHHHHHHHccccccHHHHHHHHHHHHHHccccccEEcccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEccccEEEEEEEEEcccEEEEEccccEEEEEEEEccccccccccHHHHHHHHccccccccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc

ccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccEEEEEcEEccccccEEEEEEEEccccccccccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEcccccccccHHHcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHcHHHcccHHHHHHcccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccHHHHHHHcccEEEEEccEEcccccccEEEEEEEcccccEEEEEHHHHccccHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccEEEEEcccccEEEEEcHHEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc

MALLTSKNIwmrrqqcpcgdwkcyvshegdseetSVASQLakndenslnesmvapyvgmvfksdDDAFEYYGNfarksgfsvrkersrlspqlgvykrdfvcyrsgfapmrkkpggehhrdrksvrcgcdakmYLSKEVVEGVSQWFVVQFSNvhnhellesdqvrFLPAYRKIQEADQERILLLSKAGFPIHRIVKVLElekgiqggqlpfleRDVRNFVQNRRRAVQENDALLTEKRETDTMELLDICKatnetdeyFVYDFtvdennkveniawsfpgsIHAYAMLGDVVYFDTTYRSITYGLIFGAwlgidsngrTILFGVALLQDETLRSFAWALQTFVHfmkgrcpktiltdldpglgdairsalpntrhviSVCNILPKLSGWFSLLLGSQFSEFKSEFDALCHVESTEDFELQWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIFAAQTCLRSFFEQVGifsnlqnqprqEMQYMHMKTCIPIEEQARRTLTPFAFNAFQRELVLAMQYSASELANGTYLVHHFKkmdgerrviwipddeqlhcsckefessgipcrhaFRVFITknyfqlpekyfpsrwlresslaffydhdaqQNEEWIQEFHSLTERLFAESSITKERSDYIRKELTKELTRLLNEVrdmpesdgiamdftlsptd

malltskniwmrrqqcpCGDWKCYVSHEGDSEETSVASQLAkndenslnesMVAPYVGMVFKSDDDAFEYYGNFarksgfsvrkersrlspqlgvykrdfVCYRSGfapmrkkpggehhrdrksvRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQERILLLSKAGFPIHRIVKVLELEKgiqggqlpflerDVRNFVQNRrravqendalltekretdtmeLLDICKATNETDEYFVYDFTVDENNKVENIAWSFPGSIHAYAMLGDVVYFDTTYRSITYGLIFGAWLGIDSNGRTILFGVALLQDETLRSFAWALQTFVHFMKGRCPKTILTDLDPGLGDAIRSALPNTRHVISVCNILPKLSGWFSLLLGSQFSEFKSEFDALCHVESTEDFELQWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIFAAQTCLRSFFEQVGIFSNLQNQPRQEMQYMHMKTCIPIEEQARRTLTPFAFNAFQRELVLAMQYSASELANGTYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFESSGIPCRHAFRVFITKNYFQLPEKYFPSRWLRESSLAFFYDHDAQQNEEWIQEFHSLTERLfaessitkersdyiRKELTKELTRLLnevrdmpesdgiamdftlsptd

******KNIWMRRQQCPCGDWKCYVS**************************VAPYVGMVFKSDDDAFEYYGNFARKSGFSV******LSPQLGVYKRDFVCYRSGFA****************VRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRNFVQNRRRAV****ALLT****TDTMELLDICKATNETDEYFVYDFTVDENNKVENIAWSFPGSIHAYAMLGDVVYFDTTYRSITYGLIFGAWLGIDSNGRTILFGVALLQDETLRSFAWALQTFVHFMKGRCPKTILTDLDPGLGDAIRSALPNTRHVISVCNILPKLSGWFSLLLGSQFSEFKSEFDALCHVESTEDFELQWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIFAAQTCLRSFFEQVGIFSNLQNQPRQEMQYMHMKTCIPIEEQARRTLTPFAFNAFQRELVLAMQYSASELANGTYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFESSGIPCRHAFRVFITKNYFQLPEKYFPSRWLRESSLAFFYDHDAQQNEEWIQEFHSLTERLFAESSI******YIR*********************************

***************************************************MVAPYVGMVFKSDDDAFEYYGNFARKSGFSVRKERSRLSPQLGVYKRDFVCYRSGF*******************CGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRNFVQNRRRAVQENDALLTEKRETDTMELLDICKATNETDEYFVYDFTVDENNKVENIAWSFPGSIHAYAMLGDVVYFDTTYRSITYGLIFGAWLGIDSNGRTILFGVALLQDETLRSFAWALQTFVHFMKGRCPKTILTDLDPGLGDAIRSALPNTRHVISVCNILPKLSGWFSLLLGSQFSEFKSEFDALCHVESTEDFELQWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIFAAQTCLRSFFEQVGIFSNLQNQPRQEMQYMHMKTCIPIEEQARRTLTPFAFNAFQRELVLAMQYSASELANGTYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFESSGIPCRHAFRVFITKNYFQLPEKYFPSRWLRESS****************QEFHSLTERLFAESSITKERSDYIRKELTKELTRL***********************

MALLTSKNIWMRRQQCPCGDWKCYVSH**************KNDENSLNESMVAPYVGMVFKSDDDAFEYYGNFARKSGFSVRKERSRLSPQLGVYKRDFVCYRSGFAPMR*************VRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRNFVQNRRRAVQENDALLTEKRETDTMELLDICKATNETDEYFVYDFTVDENNKVENIAWSFPGSIHAYAMLGDVVYFDTTYRSITYGLIFGAWLGIDSNGRTILFGVALLQDETLRSFAWALQTFVHFMKGRCPKTILTDLDPGLGDAIRSALPNTRHVISVCNILPKLSGWFSLLLGSQFSEFKSEFDALCHVESTEDFELQWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIFAAQTCLRSFFEQVGIFSNLQNQPRQEMQYMHMKTCIPIEEQARRTLTPFAFNAFQRELVLAMQYSASELANGTYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFESSGIPCRHAFRVFITKNYFQLPEKYFPSRWLRESSLAFFYDHDAQQNEEWIQEFHSLTERLFAESSITKERSDYIRKELTKELTRLLNEVRDMPESDGIAMDFTLSPTD

******KNIWMRRQQCPCGD******************************SMVAPYVGMVFKSDDDAFEYYGNFARKSGFSVRKERSRLSPQLGVYKRDFVCYRSGF*****************VRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRNFVQNRRRAVQENDALLTEKRETDTMELLDICKATNETDEYFVYDFTVDENNKVENIAWSFPGSIHAYAMLGDVVYFDTTYRSITYGLIFGAWLGIDSNGRTILFGVALLQDETLRSFAWALQTFVHFMKGRCPKTILTDLDPGLGDAIRSALPNTRHVISVCNILPKLSGWFSLLLGSQFSEFKSEFDALCHVESTEDFELQWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIFAAQTCLRSFFEQVGIFSNLQNQPRQEMQYMHMKTCIPIEEQARRTLTPFAFNAFQRELVLAMQYSASELANGTYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFESSGIPCRHAFRVFITKNYFQLPEKYFPSRWLRESSLA********QNEEWIQEFHSLTERLFAESSITKERSDYIRKELTKELTRLLNEVRDM****************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		691	2.2.26 [Sep-21-2011]
Q9LKR4		685	Putative protein FAR1-REL	yes	no	0.969	0.978	0.557	0.0
Q9SY66		680	Protein FAR1-RELATED SEQU	no	no	0.911	0.926	0.406	1e-150
Q9SZL8		788	Protein FAR1-RELATED SEQU	no	no	0.801	0.703	0.320	4e-67
Q9SWG3		827	Protein FAR-RED IMPAIRED	no	no	0.868	0.725	0.269	8e-57
Q9ZVC9		851	Protein FAR1-RELATED SEQU	no	no	0.801	0.650	0.260	6e-49
Q9LIE5		839	Protein FAR-RED ELONGATED	no	no	0.794	0.654	0.253	2e-46
Q9M8J3		764	Protein FAR1-RELATED SEQU	no	no	0.745	0.674	0.265	5e-45
Q6NQJ7		732	Protein FAR1-RELATED SEQU	no	no	0.850	0.803	0.254	9e-44
Q3E7I5		788	Protein FAR1-RELATED SEQU	no	no	0.733	0.643	0.263	4e-43
Q9SSQ4		703	Protein FAR1-RELATED SEQU	no	no	0.816	0.802	0.248	8e-36

>sp\|Q9LKR4\|FRS10_ARATH Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2	Back alignment and function desciption

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/675 (55%), Positives = 484/675 (71%), Gaps = 5/675 (0%)

Query: 1   MALLTSKNIWMRRQQCPCGDWKCYVSHEGDSEETSVASQLAKNDENSLNESMVAPYVGMV 60
           MAL    NIW+RRQQCPCGDWKCY+  E D    + +   +     S  +++  PYVG +
Sbjct: 1   MALKPLNNIWIRRQQCPCGDWKCYIRLEEDESTITKSEIESTPTPTSQYDTVFTPYVGQI 60

Query: 61  FKSDDDAFEYYGNFARKSGFSVRKERSRLSPQLGVYKRDFVCYRSGFAPMRKKPGGEHHR 120
           F +DD+AFEYY  FARKSGFS+RK RS  S  LGVY+RDFVCYRSGF   RKK   EH R
Sbjct: 61  FTTDDEAFEYYSTFARKSGFSIRKARSTESQNLGVYRRDFVCYRSGFNQPRKKANVEHPR 120

Query: 121 DRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQE 180
           +RKSVRCGCD K+YL+KEVV+GVS W+V QFSNVHNHELLE DQVR LPAYRKIQ++DQE
Sbjct: 121 ERKSVRCGCDGKLYLTKEVVDGVSHWYVSQFSNVHNHELLEDDQVRLLPAYRKIQQSDQE 180

Query: 181 RILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRNFVQNRRRAVQENDALLTEKRE 240
           RILLLSKAGFP++RIVK+LELEKG+  GQLPF+E+DVRNFV+  +++VQENDA +TEKRE
Sbjct: 181 RILLLSKAGFPVNRIVKLLELEKGVVSGQLPFIEKDVRNFVRACKKSVQENDAFMTEKRE 240

Query: 241 TDTMELLDICKATNETDEYFVYDFTVDENNKVENIAWSFPGSIHAYAMLGDVVYFDTTYR 300
           +DT+ELL+ CK   E D  FVYD T DEN KVENIAW++  S+  Y++ GDVV FDT+YR
Sbjct: 241 SDTLELLECCKGLAERDMDFVYDCTSDENQKVENIAWAYGDSVRGYSLFGDVVVFDTSYR 300

Query: 301 SITYGLIFGAWLGIDSNGRTILFGVALLQDETLRSFAWALQTFVHFMKGRCPKTILTDLD 360
           S+ YGL+ G + GID+NG+ +L G  LLQDE+ RSF WALQTFV FM+GR P+TILTD+D
Sbjct: 301 SVPYGLLLGVFFGIDNNGKAMLLGCVLLQDESCRSFTWALQTFVRFMRGRHPQTILTDID 360

Query: 361 PGLGDAIRSALPNTRHVISVCNILPKLSGWFSLLLGSQFSEFKSEFDALCHVESTEDFEL 420
            GL DAI   +PNT HV+ + +I+ KL+ WFS  LGS + EF++ FD LC   + ++FE 
Sbjct: 361 TGLKDAIGREMPNTNHVVFMSHIVSKLASWFSQTLGSHYEEFRAGFDMLCRAGNVDEFEQ 420

Query: 421 QWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIFAAQ 480
           QW  +V+ FGL  DRH ALLYS R SW    IR +F+A+  T  +  S+D+FLKR+    
Sbjct: 421 QWDLLVTRFGLVPDRHAALLYSCRASWLPCCIREHFVAQTMTSEFNLSIDSFLKRVVDGA 480

Query: 481 TCLRSFFE----QVGIFSNLQNQPRQEMQYMHMKTCIPIEEQARRTLTPFAFNAFQRELV 536
           TC++   E    QV   ++L  Q      Y  +KTC+P+E+ AR  LTP+AF+  Q E+V
Sbjct: 481 TCMQLLLEESALQVSAAASLAKQILPRFTYPSLKTCMPMEDHARGILTPYAFSVLQNEMV 540

Query: 537 LAMQYSASELANGTYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFESSGIPCRHAFRVFI 596
           L++QY+ +E+ANG ++VHH+KKM+GE  VIW P++E++ CSCKEFE SGI CRH  RV  
Sbjct: 541 LSVQYAVAEMANGPFIVHHYKKMEGECCVIWNPENEEIQCSCKEFEHSGILCRHTLRVLT 600

Query: 597 TKNYFQLPEKYFPSRWLRESSLAFFYDHDAQQ-NEEWIQEFHSLTERLFAESSITKERSD 655
            KN F +PE+YF  RW +ES      + + Q   ++  Q FHSLTE L  ES I+K+R D
Sbjct: 601 VKNCFHIPEQYFLLRWRQESPHVATENQNGQGIGDDSAQTFHSLTETLLTESMISKDRLD 660

Query: 656 YIRKELTKELTRLLN 670
           Y  +EL+  + R+ N
Sbjct: 661 YANQELSLLIDRVRN 675

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SY66\|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1	Back alignment and function description

>sp\|Q9SZL8\|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1	Back alignment and function description

>sp\|Q9SWG3\|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1	Back alignment and function description

>sp\|Q9ZVC9\|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2	Back alignment and function description

>sp\|Q9LIE5\|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1	Back alignment and function description

>sp\|Q9M8J3\|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1	Back alignment and function description

>sp\|Q6NQJ7\|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2	Back alignment and function description

>sp\|Q3E7I5\|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1	Back alignment and function description

>sp\|Q9SSQ4\|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		691
297736710		690	unnamed protein product [Vitis vinifera]	0.995	0.997	0.758	0.0
225469065		843	PREDICTED: putative protein FAR1-RELATED	0.972	0.797	0.762	0.0
449434406		692	PREDICTED: putative protein FAR1-RELATED	0.994	0.992	0.742	0.0
356532357		691	PREDICTED: putative protein FAR1-RELATED	0.994	0.994	0.732	0.0
224137232		683	predicted protein [Populus trichocarpa]	0.965	0.976	0.751	0.0
255568227		656	conserved hypothetical protein [Ricinus	0.947	0.998	0.754	0.0
147841966		633	hypothetical protein VITISV_001460 [Viti	0.913	0.996	0.766	0.0
359485832		1736	PREDICTED: putative pentatricopeptide re	0.992	0.395	0.640	0.0
296085025		1355	unnamed protein product [Vitis vinifera]	0.985	0.502	0.643	0.0
147860681		692	hypothetical protein VITISV_044035 [Viti	0.992	0.991	0.640	0.0

>gi\|297736710\|emb\|CBI25746.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1103 bits (2852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/691 (75%), Positives = 593/691 (85%), Gaps = 3/691 (0%)

Query: 1   MALLTSKNIWMRRQQCPCGDWKCYVSHEGDSEETSVASQLAKNDENSLNESMVAPYVGMV 60
           M    SK+IW RRQQCPCGDWKCY++HEGD EE S+ SQLAK +  S  E+MVAPYVGMV
Sbjct: 1   MNSAASKSIWYRRQQCPCGDWKCYITHEGDVEEPSMTSQLAKYNTMS-TEAMVAPYVGMV 59

Query: 61  FKSDDDAFEYYGNFARKSGFSVRKERSRLSPQLGVYKRDFVCYRSGFAPMRKKPGGEHHR 120
           FKSD+DAFEYYGNFARK+GFS+RKERSRLSPQLGVYKRDFVCYRSGFAP RKKP GEHHR
Sbjct: 60  FKSDEDAFEYYGNFARKNGFSIRKERSRLSPQLGVYKRDFVCYRSGFAPARKKPTGEHHR 119

Query: 121 DRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQE 180
           DRKSVRCGCDAKMYLSKEVV+GVSQWFVVQFSNVHNHELLE DQVR LPAYRKI E DQE
Sbjct: 120 DRKSVRCGCDAKMYLSKEVVDGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEVDQE 179

Query: 181 RILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRNFVQNRRRAVQENDALLTEKRE 240
           RILLLSKAGFP HRIVKVLE+EKGIQGGQLPFLERDVRNF+QNR+R VQENDALL+EKRE
Sbjct: 180 RILLLSKAGFPTHRIVKVLEMEKGIQGGQLPFLERDVRNFIQNRKRVVQENDALLSEKRE 239

Query: 241 TDTMELLDICKATNETDEYFVYDFTVDENNKVENIAWSFPGSIHAYAMLGDVVYFDTTYR 300
            DT ELL+ CKAT E DE FVYDFTVDE++KVENIAWS+  S+HAY +  DVVYFDTTYR
Sbjct: 240 NDTTELLEACKATKEADENFVYDFTVDESDKVENIAWSYGESVHAYNVFSDVVYFDTTYR 299

Query: 301 SITYGLIFGAWLGIDSNGRTILFGVALLQDETLRSFAWALQTFVHFMKGRCPKTILTDLD 360
           SITYG++FGAW GID++G+T+ FG  LLQDET RSFAWALQTFV FMKGR P+ I+TDLD
Sbjct: 300 SITYGMLFGAWFGIDNHGKTVFFGCVLLQDETHRSFAWALQTFVQFMKGRPPQAIITDLD 359

Query: 361 PGLGDAIRSALPNTRHVISVCNILPKLSGWFSLLLGSQFSEFKSEFDALCHVESTEDFEL 420
           PGL DAIRS LP T+HVISV NIL KLS WFSL LG Q++EFKSEF+AL  +E  ++F+L
Sbjct: 360 PGLRDAIRSELPTTKHVISVWNILAKLSSWFSLPLGLQYAEFKSEFEALYCLEVPDEFDL 419

Query: 421 QWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIFAAQ 480
           +W+QMVS FGL SD+HIALL+S+R SWAL++IRGYFLARM T  Y KSVD+FLK IF AQ
Sbjct: 420 RWNQMVSRFGLSSDKHIALLFSLRASWALAFIRGYFLARMTTELYAKSVDSFLKGIFNAQ 479

Query: 481 TCLRSFFEQVGIFSNLQNQPRQEMQYMHMKTCIPIEEQARRTLTPFAFNAFQRELVLAMQ 540
           TCLRSFFEQVGI SN QN   +EMQY+H KTCIPIEE AR TLTPFAF A Q ELVLAMQ
Sbjct: 480 TCLRSFFEQVGISSNFQNHEFEEMQYVHSKTCIPIEENARSTLTPFAFRALQHELVLAMQ 539

Query: 541 YSASELANGTYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFESSGIPCRHAFRVFITKNY 600
           Y+ASE++ G+Y+V HF KM+GER VIWIP++EQ+HCSCKEFE SGI CRHA R+ + KNY
Sbjct: 540 YAASEMSTGSYIVRHFSKMEGERLVIWIPEEEQIHCSCKEFEFSGILCRHALRILVMKNY 599

Query: 601 FQLPEKYFPSRWLRESSLAFFYDHDAQQ-NEEWIQEFHSLTERLFAESSITKERSDYIRK 659
           FQLPEKYFPSRW RES+L  + D + Q  ++EW QEFHSLT  LF ESS+TKERSD++R+
Sbjct: 600 FQLPEKYFPSRWRRESTLIPYDDRNTQNGDDEWFQEFHSLTATLFNESSMTKERSDHVRR 659

Query: 660 ELTKELTRLLNEVRDMPESDGIAMDFTLSPT 690
           ELTKE+TRLLNEVR MP S+ + MD TLSPT
Sbjct: 660 ELTKEITRLLNEVRGMPPSEEV-MDSTLSPT 689

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225469065\|ref\|XP_002268022.1\| PREDICTED: putative protein FAR1-RELATED SEQUENCE 10-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449434406\|ref\|XP_004134987.1\| PREDICTED: putative protein FAR1-RELATED SEQUENCE 10-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356532357\|ref\|XP_003534740.1\| PREDICTED: putative protein FAR1-RELATED SEQUENCE 10-like [Glycine max]	Back alignment and taxonomy information

>gi\|224137232\|ref\|XP_002322506.1\| predicted protein [Populus trichocarpa] gi\|222867136\|gb\|EEF04267.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255568227\|ref\|XP_002525089.1\| conserved hypothetical protein [Ricinus communis] gi\|223535670\|gb\|EEF37336.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|147841966\|emb\|CAN63133.1\| hypothetical protein VITISV_001460 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359485832\|ref\|XP_002268817.2\| PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296085025\|emb\|CBI28440.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147860681\|emb\|CAN79288.1\| hypothetical protein VITISV_044035 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		691
TAIR\|locus:2182778		685	FRS10 "FAR1-related sequence 1	0.968	0.976	0.560	9.5e-208
TAIR\|locus:2012828		680	FRS11 "FAR1-related sequence 1	0.911	0.926	0.407	1.4e-135
TAIR\|locus:2121060		788	FRS5 "FAR1-related sequence 5"	0.821	0.720	0.317	1.1e-66
TAIR\|locus:2129665		827	FAR1 "FAR-RED IMPAIRED RESPONS	0.878	0.733	0.272	1.3e-61
TAIR\|locus:2014639		732	FRS4 "FAR1-related sequence 4"	0.739	0.698	0.248	6.7e-48
TAIR\|locus:2082420		764	FRS7 "FAR1-related sequence 7"	0.596	0.539	0.279	3.5e-46
TAIR\|locus:2090394		839	FHY3 "far-red elongated hypoco	0.591	0.487	0.265	6.1e-46
TAIR\|locus:2059304		851	FRS3 "FAR1-related sequence 3"	0.610	0.495	0.289	3.1e-45
TAIR\|locus:2144930		788	FRS12 "FAR1-related sequence 1	0.594	0.521	0.276	5.1e-43
TAIR\|locus:2062606		807	FRS2 "FAR1-related sequence 2"	0.613	0.525	0.247	1.8e-40

TAIR\|locus:2182778 FRS10 "FAR1-related sequence 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2009 (712.3 bits), Expect = 9.5e-208, P = 9.5e-208
 Identities = 379/676 (56%), Positives = 486/676 (71%)

Query:     1 MALLTSKNIWMRRQQCPCGDWKCYVSHEGDSEETSVASQLAKNDE-NSLNESMVAPYVGM 59
             MAL    NIW+RRQQCPCGDWKCY+  E D E T   S++       S  +++  PYVG 
Sbjct:     1 MALKPLNNIWIRRQQCPCGDWKCYIRLEED-ESTITKSEIESTPTPTSQYDTVFTPYVGQ 59

Query:    60 VFKSDDDAFEYYGNFARKSGFSVRKERSRLSPQLGVYKRDFVCYRSGFAPMRKKPGGEHH 119
             +F +DD+AFEYY  FARKSGFS+RK RS  S  LGVY+RDFVCYRSGF   RKK   EH 
Sbjct:    60 IFTTDDEAFEYYSTFARKSGFSIRKARSTESQNLGVYRRDFVCYRSGFNQPRKKANVEHP 119

Query:   120 RDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQ 179
             R+RKSVRCGCD K+YL+KEVV+GVS W+V QFSNVHNHELLE DQVR LPAYRKIQ++DQ
Sbjct:   120 RERKSVRCGCDGKLYLTKEVVDGVSHWYVSQFSNVHNHELLEDDQVRLLPAYRKIQQSDQ 179

Query:   180 ERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRNFVQNRRRAVQENDALLTEKR 239
             ERILLLSKAGFP++RIVK+LELEKG+  GQLPF+E+DVRNFV+  +++VQENDA +TEKR
Sbjct:   180 ERILLLSKAGFPVNRIVKLLELEKGVVSGQLPFIEKDVRNFVRACKKSVQENDAFMTEKR 239

Query:   240 ETDTMELLDICKATNETDEYFVYDFTVDENNKVENIAWSFPGSIHAYAMLGDVVYFDTTY 299
             E+DT+ELL+ CK   E D  FVYD T DEN KVENIAW++  S+  Y++ GDVV FDT+Y
Sbjct:   240 ESDTLELLECCKGLAERDMDFVYDCTSDENQKVENIAWAYGDSVRGYSLFGDVVVFDTSY 299

Query:   300 RSITYGLIFGAWLGIDSNGRTILFGVALLQDETLRSFAWALQTFVHFMKGRCPKTILTDL 359
             RS+ YGL+ G + GID+NG+ +L G  LLQDE+ RSF WALQTFV FM+GR P+TILTD+
Sbjct:   300 RSVPYGLLLGVFFGIDNNGKAMLLGCVLLQDESCRSFTWALQTFVRFMRGRHPQTILTDI 359

Query:   360 DPGLGDAIRSALPNTRHVISVCNILPKLSGWFSLLLGSQFSEFKSEFDALCHVESTEDFE 419
             D GL DAI   +PNT HV+ + +I+ KL+ WFS  LGS + EF++ FD LC   + ++FE
Sbjct:   360 DTGLKDAIGREMPNTNHVVFMSHIVSKLASWFSQTLGSHYEEFRAGFDMLCRAGNVDEFE 419

Query:   420 LQWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIFAA 479
              QW  +V+ FGL  DRH ALLYS R SW    IR +F+A+  T  +  S+D+FLKR+   
Sbjct:   420 QQWDLLVTRFGLVPDRHAALLYSCRASWLPCCIREHFVAQTMTSEFNLSIDSFLKRVVDG 479

Query:   480 QTCLRSFFE----QVGIFSNLQNQPRQEMQYMHMKTCIPIEEQARRTLTPFAFNAFQREL 535
              TC++   E    QV   ++L  Q      Y  +KTC+P+E+ AR  LTP+AF+  Q E+
Sbjct:   480 ATCMQLLLEESALQVSAAASLAKQILPRFTYPSLKTCMPMEDHARGILTPYAFSVLQNEM 539

Query:   536 VLAMQYSASELANGTYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFESSGIPCRHAFRVF 595
             VL++QY+ +E+ANG ++VHH+KKM+GE  VIW P++E++ CSCKEFE SGI CRH  RV 
Sbjct:   540 VLSVQYAVAEMANGPFIVHHYKKMEGECCVIWNPENEEIQCSCKEFEHSGILCRHTLRVL 599

Query:   596 ITKNYFQLPEKYFPSRWLRESSLAFFYDHDAQQ-NEEWIQEFHSLTERLFAESSITKERS 654
               KN F +PE+YF  RW +ES      + + Q   ++  Q FHSLTE L  ES I+K+R 
Sbjct:   600 TVKNCFHIPEQYFLLRWRQESPHVATENQNGQGIGDDSAQTFHSLTETLLTESMISKDRL 659

Query:   655 DYIRKELTKELTRLLN 670
             DY  +EL+  + R+ N
Sbjct:   660 DYANQELSLLIDRVRN 675

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009639 "response to red or far red light" evidence=ISS

TAIR\|locus:2012828 FRS11 "FAR1-related sequence 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082420 FRS7 "FAR1-related sequence 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2144930 FRS12 "FAR1-related sequence 12" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2062606 FRS2 "FAR1-related sequence 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LKR4	FRS10_ARATH	No assigned EC number	0.5570	0.9696	0.9781	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		691
PLN03097		846	PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY	7e-56
pfam03101		90	pfam03101, FAR1, FAR1 DNA-binding domain	2e-21
pfam10551		88	pfam10551, MULE, MULE transposase domain	3e-17
pfam04434		38	pfam04434, SWIM, SWIM zinc finger	1e-06
smart00575		28	smart00575, ZnF_PMZ, plant mutator transposase zin	5e-06

>gnl\|CDD\|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional	Back alignment and domain information

 Score =  204 bits (520), Expect = 7e-56
 Identities = 171/673 (25%), Positives = 294/673 (43%), Gaps = 85/673 (12%)

Query: 27  HEGDSEE---TSVASQLAKNDE---NSLNESMVA--------PYVGMVFKSDDDAFEYYG 72
           H GD E      VA ++   D    NS    +V         P  GM F+S  +A+ +Y 
Sbjct: 32  HNGDMEIGNVVDVAEEVLSIDGGDMNSPTGELVEFKEDTNLEPLSGMEFESHGEAYSFYQ 91

Query: 73  NFARKSGFSVRKERSRLSPQLGVY-KRDFVCYRSG--------FAPMR---KKPGGEHHR 120
            +AR  GF+   + SR S     +    F C R G        F   R    K   E+  
Sbjct: 92  EYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENGT 151

Query: 121 DRKS-VRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQ 179
            R+S  +  C A M++ K   +G  +W +  F   HNHELL +  V           ++Q
Sbjct: 152 GRRSCAKTDCKASMHV-KRRPDG--KWVIHSFVKEHNHELLPAQAV-----------SEQ 197

Query: 180 ERILLLSKAGFPIHRIVKVLELEKGIQGGQLPFLERDVRN-FVQNRRRAVQENDALLTEK 238
            R +  + A        +     K + G     L+ D ++ F + R   ++  D  +   
Sbjct: 198 TRKMYAAMA--------RQFAEYKNVVG-----LKNDSKSSFDKGRNLGLEAGDTKI--- 241

Query: 239 RETDTMELLDICKATNETDEYFVYDFTVDENNKVENIAWSFPGSIHAYAMLGDVVYFDTT 298
                  LLD        +  F Y   + E+ +++N+ W    S H Y    DVV FDTT
Sbjct: 242 -------LLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTT 294

Query: 299 YRSITYGLIFGAWLGIDSNGRTILFGVALLQDETLRSFAWALQTFVHFMKGRCPKTILTD 358
           Y    Y +    ++G++ + + +L G AL+ DE+  +++W +QT++  M G+ PK I+TD
Sbjct: 295 YVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITD 354

Query: 359 LDPGLGDAIRSALPNTRHVISVCNILPKLSGWFSLLLGSQFSEFKSEFDALCHVESTE-D 417
            D  +   I    PN  H   + +IL K+S     ++  Q   F ++F+   +   TE +
Sbjct: 355 QDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVI-KQHENFMAKFEKCIYRSWTEEE 413

Query: 418 FELQWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIF 477
           F  +W +++  F L  D  +  LY  R  W  +Y+R  FLA M+T    +S++AF  +  
Sbjct: 414 FGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYV 473

Query: 478 AAQTCLRSFFEQVGIFSNLQNQPRQEM--------QYMHMKTCIPIEEQARRTLTPFAFN 529
             +T ++ F +Q    + LQ++  +E         +   +K+  P+E+      T   F 
Sbjct: 474 HKKTTVQEFVKQYE--TILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFK 531

Query: 530 AFQRELVLAMQYSASELANG----TYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFESSG 585
            FQ E++ A+       +      T+ V  F+K + +  V W     ++ C C+ FE  G
Sbjct: 532 KFQVEVLGAVACHPKMESQDETSITFRVQDFEK-NQDFTVTWNQTKLEVSCICRLFEYKG 590

Query: 586 IPCRHAFRVFITKNYFQLPEKYFPSRWLRESSLAFFYDHDAQQNEEWIQEFHSLTER--- 642
             CRHA  V        +P +Y   RW +++        +++Q +  +Q ++ L +R   
Sbjct: 591 YLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQVQSRVQRYNDLCQRALK 650

Query: 643 LFAESSITKERSD 655
           L  E+S+++E  +
Sbjct: 651 LSEEASLSQESYN 663

Length = 846

>gnl\|CDD\|217369 pfam03101, FAR1, FAR1 DNA-binding domain	Back alignment and domain information

>gnl\|CDD\|220806 pfam10551, MULE, MULE transposase domain	Back alignment and domain information

>gnl\|CDD\|218087 pfam04434, SWIM, SWIM zinc finger	Back alignment and domain information

>gnl\|CDD\|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		691
PLN03097		846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551		93	MULE: MULE transposase domain; InterPro: IPR018289	99.86
PF03101		91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	99.81
PF00872		381	Transposase_mut: Transposase, Mutator family; Inte	99.79
COG3328		379	Transposase and inactivated derivatives [DNA repli	99.35
PF08731		111	AFT: Transcription factor AFT; InterPro: IPR014842	99.29
smart00575		28	ZnF_PMZ plant mutator transposase zinc finger.	98.84
PF03108		67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	98.55
PF04434		40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.21
PF01610		249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	97.17
PF06782		470	UPF0236: Uncharacterised protein family (UPF0236);	95.84
PF03106		60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	95.3
PF13610		140	DDE_Tnp_IS240: DDE domain	95.18
PF00665		120	rve: Integrase core domain; InterPro: IPR001584 In	90.61
smart00774		59	WRKY DNA binding domain. The WRKY domain is a DNA	88.28
PF04937		153	DUF659: Protein of unknown function (DUF 659); Int	82.76
PRK08561		151	rps15p 30S ribosomal protein S15P; Reviewed	82.1

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional	Back alignment and domain information

Probab=100.00  E-value=2.3e-125  Score=1067.92  Aligned_cols=583  Identities=25%  Similarity=0.453  Sum_probs=509.1

Q ss_pred             CCcCCCCCCCCCccCCHHHHHHHHHHHhhhcCceEEEeeeeecCCC-ceEEEEEeeccCCcCcCCCCC----C-------
Q 005549           48 LNESMVAPYVGMVFKSDDDAFEYYGNFARKSGFSVRKERSRLSPQL-GVYKRDFVCYRSGFAPMRKKP----G-------  115 (691)
Q Consensus        48 ~~~~~~~P~~Gm~F~S~eea~~~y~~yA~~~GF~vr~~~s~~~~~~-~~~~~~~~C~r~G~~~~~~~~----~-------  115 (691)
                      +.+...+|.+||+|+|+|||++||+.||..+||+||++++++++.. .+++++|+|+|+|+++.+.+.    .       
T Consensus        67 ~~~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~  146 (846)
T PLN03097         67 KEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQD  146 (846)
T ss_pred             cCCCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccC
Confidence            4567789999999999999999999999999999999999887654 789999999999987543210    0       


Q ss_pred             -CCCcccCCcccccccceeEEEEeeecCcceEEEEEEeccccCCCCCccccccccccccCCHHHHHHHHHhhhcCCChhH
Q 005549          116 -GEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLESDQVRFLPAYRKIQEADQERILLLSKAGFPIHR  194 (691)
Q Consensus       116 -~~~~r~r~s~r~gCpa~i~i~~~~~~~~~~w~V~~~~~~HNH~l~~~~~~~~l~shR~ls~~~k~~i~~l~~~g~~~~~  194 (691)
                       ...+++|+.+||||||+|.|++.   .+|+|+|+.|+.+|||||.++...         +.              .++.
T Consensus       147 ~~~~~~rR~~tRtGC~A~m~Vk~~---~~gkW~V~~fv~eHNH~L~p~~~~---------~~--------------~~r~  200 (846)
T PLN03097        147 PENGTGRRSCAKTDCKASMHVKRR---PDGKWVIHSFVKEHNHELLPAQAV---------SE--------------QTRK  200 (846)
T ss_pred             cccccccccccCCCCceEEEEEEc---CCCeEEEEEEecCCCCCCCCcccc---------ch--------------hhhh
Confidence             01123456789999999999875   458999999999999999976432         11              1233


Q ss_pred             HHHHHHHhhCcCCCCCCCchhhhhhHHHHHHHhhhhhhhhhhhcccCcHHHHHHHHHHhccCCCccEEEEEecCCCceee
Q 005549          195 IVKVLELEKGIQGGQLPFLERDVRNFVQNRRRAVQENDALLTEKRETDTMELLDICKATNETDEYFVYDFTVDENNKVEN  274 (691)
Q Consensus       195 i~~~l~~~~g~~~~~~~~~~~di~N~~~~~r~~~~~~~~~~~~~~~~d~~~ll~~~~~~~~~np~~~~~~~~d~~~~~~~  274 (691)
                      ++..+....+ ...++..+..|..|...+.|+.         ....+|++.||+||++++.+||+|+|++++|++|++++
T Consensus       201 ~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~r~~---------~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~n  270 (846)
T PLN03097        201 MYAAMARQFA-EYKNVVGLKNDSKSSFDKGRNL---------GLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKN  270 (846)
T ss_pred             hHHHHHhhhh-ccccccccchhhcchhhHHHhh---------hcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeee
Confidence            3333333333 2456777778888887765544         23678999999999999999999999999999999999


Q ss_pred             EEecccccHHHHhhcCCEEEEecccccccCCceeeEEEeeeccCceEEEeeeeccCCchhHHHHHHHHHHHHhcCCCCee
Q 005549          275 IAWSFPGSIHAYAMLGDVVYFDTTYRSITYGLIFGAWLGIDSNGRTILFGVALLQDETLRSFAWALQTFVHFMKGRCPKT  354 (691)
Q Consensus       275 if~~~~~~~~~~~~f~dvv~~D~Ty~~n~y~~~l~~~~gvd~~g~~~~~~~al~~~Et~es~~w~l~~~~~~~~~~~p~~  354 (691)
                      |||+|+.++.+|.+|||||+||+||+||+|++||++|+|||||||+++||||||.+|+.+||.|+|++|+++|+++.|++
T Consensus       271 iFWaD~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~t  350 (846)
T PLN03097        271 LFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKV  350 (846)
T ss_pred             EEeccHHHHHHHHhcCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCChHHHHHHHhhCCCCceecchhhhhhhHHhhhhhhhccchhHHHHHHhhh-ccCCCHHHHHHHHHHHHhhcCCCc
Q 005549          355 ILTDLDPGLGDAIRSALPNTRHVISVCNILPKLSGWFSLLLGSQFSEFKSEFDAL-CHVESTEDFELQWSQMVSMFGLGS  433 (691)
Q Consensus       355 iitD~~~~l~~Ai~~vfP~a~h~lC~~Hi~~n~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~efe~~w~~l~~~~~~~~  433 (691)
                      ||||+|.+|.+||++|||+|.|++|.|||++|+.++++.++. ..+.|+.+|+.+ +.+.+++|||..|..|+++|++++
T Consensus       351 IiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~-~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~  429 (846)
T PLN03097        351 IITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIK-QHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKE  429 (846)
T ss_pred             EEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhh-hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999988653 457899999875 568999999999999999999999


Q ss_pred             cHHHHHHHhhhccccccccccccccccccCccCchhhHHHhhhhcccCCHHHHHHHHHHHHhhhhh------hhhhcccc
Q 005549          434 DRHIALLYSIRTSWALSYIRGYFLARMATPAYLKSVDAFLKRIFAAQTCLRSFFEQVGIFSNLQNQ------PRQEMQYM  507 (691)
Q Consensus       434 ~~~l~~l~~~r~~W~~~y~~~~~~~g~~tt~~~Es~n~~lk~~~~~~~~l~~f~~~~~~~~~~~~~------~~~~~~~~  507 (691)
                      |+||+.||+.|++||++|+++.|++||.||+|+||+|++||+|++++++|..|+++|+.+++.+.+      ..+..+.|
T Consensus       430 n~WL~~LY~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P  509 (846)
T PLN03097        430 DEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQP  509 (846)
T ss_pred             cHHHHHHHHhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCc
Confidence            999999999999999999999999999999999999999999999999999999999999985543      22334567


Q ss_pred             ccccCchHHHHHHhhhcHHHHHHHHHHHHHHhcCeEEEee-CC---eEEEEEEEeeCCceEEEEecCCCeeEeeecCccc
Q 005549          508 HMKTCIPIEEQARRTLTPFAFNAFQRELVLAMQYSASELA-NG---TYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFES  583 (691)
Q Consensus       508 ~~kt~~p~e~q~~~~yT~~~f~~~q~el~~s~~~~v~~~~-~~---~y~V~~~~~~~~~~~V~~~~~~~~~~CsC~~fe~  583 (691)
                      .+++.+|||+||+.+|||++|++||+|+..+..|.+.... +|   +|.|....+ ++.|.|.++.....++|+|++|++
T Consensus       510 ~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~-~~~~~V~~d~~~~~v~CsC~kFE~  588 (846)
T PLN03097        510 ALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEK-NQDFTVTWNQTKLEVSCICRLFEY  588 (846)
T ss_pred             ccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecC-CCcEEEEEecCCCeEEeeccCeec
Confidence            8899999999999999999999999999999999876543 33   688876544 567999999999999999999999


Q ss_pred             CCccccchhHHhhhcCcccCCCCCccccccccccccccccccC---cchhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 005549          584 SGIPCRHAFRVFITKNYFQLPEKYFPSRWLRESSLAFFYDHDA---QQNEEWIQEFHSLTERLFAESSITKERSDYIRKE  660 (691)
Q Consensus       584 ~GipC~Hil~Vl~~~~i~~iP~~yil~RWtk~a~~~~~~~~~~---~~~~~r~~~l~~~~~~l~~~~~~s~e~~~~~~~~  660 (691)
                      .||||+|||+||.++||.+||++|||+||||+|+.....+...   .+...||+.|++.+.+++.+|+.|+|.|+.|+++
T Consensus       589 ~GILCrHaLkVL~~~~v~~IP~~YILkRWTKdAK~~~~~~~~~~~~~~~~~Ryn~L~r~a~kla~~as~S~E~y~~a~~~  668 (846)
T PLN03097        589 KGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRA  668 (846)
T ss_pred             CccchhhHHHHHhhcCcccCchhhhhhhchhhhhhcccCccccccccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999876554332   2236799999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 005549          661 LTKELTRL  668 (691)
Q Consensus       661 l~~~~~~~  668 (691)
                      |.+.+..+
T Consensus       669 L~e~~~~~  676 (846)
T PLN03097        669 LEEAFGNC  676 (846)
T ss_pred             HHHHHHHH
Confidence            95444443

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]	Back alignment and domain information

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants	Back alignment and domain information

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]	Back alignment and domain information

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis	Back alignment and domain information

>smart00575 ZnF_PMZ plant mutator transposase zinc finger	Back alignment and domain information

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]	Back alignment and domain information

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function	Back alignment and domain information

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif	Back alignment and domain information

>PF13610 DDE_Tnp_IS240: DDE domain	Back alignment and domain information

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known	Back alignment and domain information

>smart00774 WRKY DNA binding domain	Back alignment and domain information

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function	Back alignment and domain information

>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		691
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 87/647 (13%), Positives = 172/647 (26%), Gaps = 263/647 (40%)

Query: 212 FLERDVRNF----VQNRRRAV---QENDALLTEK-RETDTMELLDI-CKATNETDEYFV- 261
           F +  V NF    VQ+  +++   +E D ++  K   + T+ L         E  + FV 
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 262 ------YDFT------------------VDENNKVENIAWSFP----------------- 280
                 Y F                   +++ +++ N    F                  
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 281 ------GSIHAYAMLG--------DVVYFDTTYRSITYGLIFGAWLG------------- 313
                  ++    +LG        DV         + +  IF  WL              
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-IF--WLNLKNCNSPETVLEM 201

Query: 314 -------IDSNG-------RTILFGVALLQDETLRSFA--------------WALQTFVH 345
                  ID N          I   +  +Q E  R                    + +  
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 346 FMKGRCPKTILTDLDPGLGDAIRSALPNTRHVISVCNILP----KLSGWFSLLLGSQFSE 401
           F    C K +LT     + D + +A   T H+    + +     ++       L  +  +
Sbjct: 262 F-NLSC-KILLTTRFKQVTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 402 FKSEFDALCHVESTEDFELQWSQMVSMFGLGSDRHIALLYSIRTSWALSYIRGYFLARMA 461
              E      V +T          +S+           +     +W     +     ++ 
Sbjct: 318 LPRE------VLTTNPR------RLSIIA-------ESIRDGLATW--DNWKHVNCDKLT 356

Query: 462 TPAYLKSVDAFLKRIFAAQTCLRSFFEQVGIF---------------------------- 493
           T      +++ L  +  A+   R  F+++ +F                            
Sbjct: 357 T-----IIESSLNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 494 -----SNLQNQPRQEMQYMH---MKTCIPIEEQA---RRTLT----PFAFNAFQRELVLA 538
                S ++ QP++    +    ++  + +E +    R  +     P  F++        
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 539 MQYSASELANGTYLVHHFKKMDGERRVIWIPDDEQLHCSCKEFESSGIPCRHAFRVFITK 598
            QY  S      ++ HH K ++   R+               F                 
Sbjct: 470 DQYFYS------HIGHHLKNIEHPERM-------------TLF----------------- 493

Query: 599 NYFQLPEKYFPSRWL----RESSLAFFYD-------HDAQQNEEWIQEFHSLTERL---- 643
                   +   R+L    R  S A+             +  + +I +     ERL    
Sbjct: 494 -----RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 644 --F----AESSITKERSDYIRKELTKELTRLLNEVRDMPESDGIAMD 684
             F     E+ I  + +D +R  L             M E + I  +
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIAL-------------MAEDEAIFEE 582

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		691
d1wj2a_		71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	94.58

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.58  E-value=0.029  Score=29.35  Aligned_cols=59  Identities=19%  Similarity=0.359  Sum_probs=40.2

Q ss_pred             HCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCC
Q ss_conf             11960998112440898269999962257767678899998765577433365542577784342701199999743645
Q 005549           77 KSGFSVRKERSRLSPQLGVYKRDFVCYRSGFAPMRKKPGGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHN  156 (691)
Q Consensus        77 ~~GF~vr~~~s~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~r~s~r~gCpa~i~i~~~~~~~~~~w~V~~~~~~HN  156 (691)
                      .-||.+|+--.+.-++...-|-+|.|+.                      -||+|+-.|.+..  .++.-.++....+||
T Consensus        11 dDGy~WRKYGQK~ikgs~~pRsYYrCt~----------------------~~C~a~K~Vqr~~--~d~~~~~vtY~G~H~   66 (71)
T d1wj2a_          11 DDGYRWRKYGQKVVKGNPYPRSYYKCTT----------------------PGCGVRKHVERAA--TDPKAVVTTYEGKHN   66 (71)
T ss_dssp             CSSSCBCCCEEECCTTCSSCEEEEEEEC----------------------SSCEEEEEEEEET--TTTSEEEEEEESCCS
T ss_pred             CCCCEECCCCCEECCCCCCCEEEEECCC----------------------CCCCCCCEEEEEC--CCCCEEEEEEEEEEC
T ss_conf             7775724237600259987108978451----------------------4798744288876--999999999835708


Q ss_pred             CCC
Q ss_conf             888
Q 005549          157 HEL  159 (691)
Q Consensus       157 H~l  159 (691)
                      |++
T Consensus        67 h~~   69 (71)
T d1wj2a_          67 HDL   69 (71)
T ss_dssp             SCC
T ss_pred             CCC
T ss_conf             988

PyMOL of d1wj2a_