Citrus Sinensis ID: 005567

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
MLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQKLGYATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS
ccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHccccccccccccccEEEEEEEcccHHHHHHHHHcHHHHHHHHHcccccccccccEEEEEEccEEEEEEccEEEEEcccccccccccEEEEEccEEEEccccEEEEEEEEcccccccEEEEEEccccccEEccccccccccccccccccEEEEEEccccccccccEEEEEccccccccEEEEEccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHccccccHHHHHccccccccccHHHHHHHcccHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHEEEEEEEccccccccccccccccccccccccc
ccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccEEcccccccccEEcccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEEccccHHHccHHHHHHHHHHHHcccccHHHccccccEEEEEEEcccHHHHHHHHHcHHHHHHHHHHccccccccccEEEEEEccEEEEEEccEEEEEcccccccccccEEEEEEEEEEEccccEEEEEEEccccccccEEEEEEcccEEEEEcEEcccccccccccccccEEEEEEcccccccccEEEEEEcccccccccEEEEEcHHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccEEEEccccccccccccHHHEHccccHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccEEccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccEEcccccc
mlnertsagnSEVVQAFLangqgcptpfrQQLNATvsempqqvslphdargaedqdgnvaqikmnnfdlndvyidsddgtedverspvpanlgtssidcpswvrqdsqqssppqtsgnsdsasaqspssssdaqsrTDRIVFKLfgkepndfplVLRAQILDWlshspsdmesyirpgCVILTIYLRQAEAAWEELCCDLTFSLSRlldlsndsfwtSGWVYARVQHQIAFIYNgqvvldtslpprsnnyskilsvkpiavpaseRAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLddvdgfkeldelqcvnfscsipavtgrgfieiedhgfsstffpfivAEEDVCSEIRMLESALEfnrtdadverfgkidtknQAMDFIHEIGWLFhrsqsksrlghldpntdlfplrRFKWLIEFSMDHEWCAVVKKLLHILLDGtvslgehpsldlALTELGLLHRAVRKNSRPLVDLLLRFvplevsdrlgsenkalvdgvhkgflfrpdvigpagltpihiaagkdgseDVLDaltddpgmvgIEAWKnardssgstpedyarLRGHYSYIHLVQKKinkrpngghvvvdicgvvpdsniyqkqnnestasfeigqtpvrptqhncklchqklgyatasrslvykPAMLSMVAIAAVCVCVALLFkscpevlyvfrpfrwemldygts
mlnertsagnSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTsgnsdsasaqspssssdaqsrTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESalefnrtdadvERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAwknardssgstPEDYARLRGHYSYIHLVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQKLGYATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS
MLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRqdsqqssppqtsGNsdsasaqspssssdaqsRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFslsrlldlsndsFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQKLGYATASRSLVYKPAMLSMvaiaavcvcvaLLFKSCPEVLYVFRPFRWEMLDYGTS
****************FL********************************************KMNNFDLNDVYI****************************************************************RIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAW*************YARLRGHYSYIHLVQKKINKRPNGGHVVVDICGVVPDSNIYQ***********I***PVRPTQHNCKLCHQKLGYATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDY***
**********************************************************************DVYID*****************************************************************VFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVD*FKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRS*************DLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTV*********LALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNGGHVVVDI*************************************************SLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYG**
**********SEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSW*********************************RTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKN*********EDYARLRGHYSYIHLVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQKLGYATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS
************************************************************QIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDS***************************SRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVS*RLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNGGHVVVDICGV***********************PVRPTQHNCKLCHQKLGYATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLD****
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MLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFSSTFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQKLGYATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query691 2.2.26 [Sep-21-2011]
Q9SMX9881 Squamosa promoter-binding yes no 0.884 0.693 0.618 0.0
Q9S7P5927 Squamosa promoter-binding no no 0.887 0.661 0.611 0.0
Q75LH6969 Squamosa promoter-binding yes no 0.865 0.617 0.479 1e-155
Q9LGU7862 Squamosa promoter-binding no no 0.784 0.628 0.455 1e-134
Q6Z8M81140 Squamosa promoter-binding no no 0.793 0.480 0.347 1e-86
A2YX041140 Squamosa promoter-binding N/A no 0.793 0.480 0.347 1e-86
Q8RY951035 Squamosa promoter-binding no no 0.784 0.523 0.339 1e-78
Q700C2988 Squamosa promoter-binding no no 0.756 0.529 0.332 6e-75
Q8S9G8801 Squamosa promoter-binding no no 0.386 0.333 0.288 1e-24
Q6I576842 Squamosa promoter-binding no no 0.442 0.363 0.268 5e-22
>sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2 Back     alignment and function desciption
 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/664 (61%), Positives = 496/664 (74%), Gaps = 53/664 (7%)

Query: 36  VSEMPQQVSLPHDAR--GAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLG 93
           + + PQ+      AR  G   ++ +  Q+KMN+FDLND+YIDSDD   DVERSP P N  
Sbjct: 263 IEQAPQEELKQFSARQDGTATENRSEKQVKMNDFDLNDIYIDSDD--TDVERSPPPTNPA 320

Query: 94  TSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSSD-AQSRTDRIVFKLFGKEPNDF 152
           TSS+D PSW+     QSSPPQTS NSDSAS QSPSSSS+ AQ RT RIVFKLFGKEPN+F
Sbjct: 321 TSSLDYPSWI----HQSSPPQTSRNSDSASDQSPSSSSEDAQMRTGRIVFKLFGKEPNEF 376

Query: 153 PLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSN 212
           P+VLR QILDWLSHSP+DMESYIRPGC++LTIYLRQAE AWEEL  DL FSL +LLDLS+
Sbjct: 377 PIVLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETAWEELSDDLGFSLGKLLDLSD 436

Query: 213 DSFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVK 272
           D  WT+GW+Y RVQ+Q+AF+YNGQVV+DTSL  +S +YS I+SVKP+A+ A+E+AQF VK
Sbjct: 437 DPLWTTGWIYVRVQNQLAFVYNGQVVVDTSLSLKSRDYSHIISVKPLAIAATEKAQFTVK 496

Query: 273 GINLGRSATRLLCAVEGKYMVQEATHE-LLDDVDGFKELDEL-QCVNFSCSIPAVTGRGF 330
           G+NL +  TRLLC+VEGKY++QE TH+    + D FK+  E+ +CVNFSC +P ++GRGF
Sbjct: 497 GMNLRQRGTRLLCSVEGKYLIQETTHDSTTREDDDFKDNSEIVECVNFSCDMPILSGRGF 556

Query: 331 IEIEDHGFSSTFFPFIVAE-EDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIH 389
           +EIED G SS+FFPF+V E +DVCSEIR+LE+ LEF  T          D+  QAMDFIH
Sbjct: 557 MEIEDQGLSSSFFPFLVVEDDDVCSEIRILETTLEFTGT----------DSAKQAMDFIH 606

Query: 390 EIGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSL 449
           EIGWL HR    S+LG  DPN  +FPL RF+WLIEFSMD EWCAV++KLL++  DG V  
Sbjct: 607 EIGWLLHR----SKLGESDPNPGVFPLIRFQWLIEFSMDREWCAVIRKLLNMFFDGAV-- 660

Query: 450 GEHPSLDLA-LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFL 508
           GE  S   A L+EL LLHRAVRKNS+P+V++LLR++P +                 +  L
Sbjct: 661 GEFSSSSNATLSELCLLHRAVRKNSKPMVEMLLRYIPKQ----------------QRNSL 704

Query: 509 FRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLR 568
           FRPD  GPAGLTP+HIAAGKDGSEDVLDALT+DP MVGIEAWK  RDS+G TPEDYARLR
Sbjct: 705 FRPDAAGPAGLTPLHIAAGKDGSEDVLDALTEDPAMVGIEAWKTCRDSTGFTPEDYARLR 764

Query: 569 GHYSYIHLVQKKINKRPNG-GHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQH 627
           GH+SYIHL+Q+KINK+     HVVV+I     D    + ++    ++ EI Q P      
Sbjct: 765 GHFSYIHLIQRKINKKSTTEDHVVVNIPVSFSDREQKEPKSGPMASALEITQIP------ 818

Query: 628 NCKLCHQKLGYATASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLD 687
            CKLC  KL Y T  RS+ Y+PAMLSMVAIAAVCVCVALLFKSCPEVLYVF+PFRWE+LD
Sbjct: 819 -CKLCDHKLVYGTTRRSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLYVFQPFRWELLD 877

Query: 688 YGTS 691
           YGTS
Sbjct: 878 YGTS 881
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1 Back     alignment and function description
>sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z8M8|SPL15_ORYSJ Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1 Back     alignment and function description
>sp|A2YX04|SPL15_ORYSI Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1 Back     alignment and function description
>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3 Back     alignment and function description
>sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2 Back     alignment and function description
>sp|Q8S9G8|SPL7_ARATH Squamosa promoter-binding-like protein 7 OS=Arabidopsis thaliana GN=SPL7 PE=1 SV=2 Back     alignment and function description
>sp|Q6I576|SPL9_ORYSJ Squamosa promoter-binding-like protein 9 OS=Oryza sativa subsp. japonica GN=SPL9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
255548291 1012 conserved hypothetical protein [Ricinus 0.994 0.678 0.724 0.0
224068683714 predicted protein [Populus trichocarpa] 0.984 0.952 0.721 0.0
224128183749 predicted protein [Populus trichocarpa] 0.985 0.909 0.715 0.0
225437714 997 PREDICTED: squamosa promoter-binding-lik 0.991 0.687 0.710 0.0
359480217 963 PREDICTED: squamosa promoter-binding-lik 0.926 0.664 0.749 0.0
356499594 1010 PREDICTED: squamosa promoter-binding-lik 0.988 0.676 0.681 0.0
357442095 1003 SQUAMOSA promoter binding protein [Medic 0.994 0.684 0.673 0.0
140055592772 Ankyrin [Medicago truncatula] 0.992 0.888 0.663 0.0
357511495 994 SQUAMOSA promoter binding protein [Medic 0.992 0.690 0.655 0.0
449518123 1014 PREDICTED: LOW QUALITY PROTEIN: squamosa 0.994 0.677 0.648 0.0
>gi|255548291|ref|XP_002515202.1| conserved hypothetical protein [Ricinus communis] gi|223545682|gb|EEF47186.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1023 bits (2645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/712 (72%), Positives = 579/712 (81%), Gaps = 25/712 (3%)

Query: 1    MLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARG--------- 51
            +LN  TS  NSEV   F+ N  G     +  L    S M Q+V   H A G         
Sbjct: 305  LLNGGTSFRNSEVFLTFILNALGLLRSLKLHLIVPFSGMSQRVLCSHGANGPNVQTSSSM 364

Query: 52   -----------AEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCP 100
                       +E +D    Q+KMNNFDLND+YIDSDDG ED+ERSPVP N+GTSS+DCP
Sbjct: 365  KPSIPNNYPAYSEVRDSTAVQVKMNNFDLNDIYIDSDDGAEDIERSPVPTNMGTSSLDCP 424

Query: 101  SWVRQDSQQSSPPQTSGNSDSASAQSPSSS-SDAQSRTDRIVFKLFGKEPNDFPLVLRAQ 159
            SW++QDS QSSPPQTSGNSDSASAQSPSSS  DAQSRTDRI+FKLFGKEPNDFPLVLRAQ
Sbjct: 425  SWIQQDSHQSSPPQTSGNSDSASAQSPSSSSGDAQSRTDRIIFKLFGKEPNDFPLVLRAQ 484

Query: 160  ILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSG 219
            ILDWLSHSP+D+ESYIRPGCVILTIYLRQAEAAWEELCC+L+ SLSRLLD+S+++FW +G
Sbjct: 485  ILDWLSHSPTDIESYIRPGCVILTIYLRQAEAAWEELCCNLSSSLSRLLDVSDNAFWRTG 544

Query: 220  WVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKGINLGRS 279
            W Y RVQHQIAFIYNGQVV+DTSLP RSNN+SKI SVKPIA+PA+ERAQF +KGINL R 
Sbjct: 545  WAYIRVQHQIAFIYNGQVVVDTSLPLRSNNHSKIASVKPIAIPAAERAQFVIKGINLSRP 604

Query: 280  ATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGFIEIEDHGFS 339
            ATRLLCAVEGKYM+QE T E++DD+D     DELQC+ F CSIP V+GRGFIEIEDHGFS
Sbjct: 605  ATRLLCAVEGKYMLQENTEEMMDDIDNINAHDELQCIKFCCSIPMVSGRGFIEIEDHGFS 664

Query: 340  STFFPFIVAEEDVCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHEIGWLFHRSQ 399
            S+FFPFIVAEEDVC EIRMLE  LEF  TDAD+   GKI+ KNQAMDFI+EIGWL HRSQ
Sbjct: 665  SSFFPFIVAEEDVCLEIRMLEGTLEFVGTDADLGGSGKIEAKNQAMDFINEIGWLLHRSQ 724

Query: 400  SKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLAL 459
              SRLGHL+P TDLFPL RFKWL+EFSMDHEWCAVV KLL+IL +G V  GEH SL+LAL
Sbjct: 725  LHSRLGHLNPCTDLFPLSRFKWLMEFSMDHEWCAVVTKLLNILHNGIVGTGEHSSLNLAL 784

Query: 460  TELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGL 519
            +E+GLLHRAVRKNSR LV+LLLR+VP    ++ G  NK  VDG H  FLFRPDV GPAGL
Sbjct: 785  SEMGLLHRAVRKNSRSLVELLLRYVP----EKSGPGNKLPVDGSHVNFLFRPDVTGPAGL 840

Query: 520  TPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 579
            TP+HIAAGKDGSEDVLDALTDDPGMVG+EAWK A DS+G TPE YARLRGHYSYIHLVQK
Sbjct: 841  TPLHIAAGKDGSEDVLDALTDDPGMVGVEAWKKAHDSTGFTPEGYARLRGHYSYIHLVQK 900

Query: 580  KINKRPNGGHVVVDICGVVPDSNIYQKQNNESTASFEIGQTPVRPTQHNCKLCHQKLGYA 639
            KINKRP  GHVV+DI G + + N+ QKQN   TASFE+GQ  VR  Q +CKLCHQKL Y 
Sbjct: 901  KINKRPAAGHVVLDIPGTLSECNVNQKQNEGVTASFEVGQPAVRSIQRSCKLCHQKLDYG 960

Query: 640  TASRSLVYKPAMLSMVAIAAVCVCVALLFKSCPEVLYVFRPFRWEMLDYGTS 691
            TA RSL+Y+PAMLSMVAIAAVCVCVALLFKSCPEV+YVFRPFRWE+LD+GTS
Sbjct: 961  TAGRSLLYRPAMLSMVAIAAVCVCVALLFKSCPEVVYVFRPFRWELLDFGTS 1012

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224068683|ref|XP_002302799.1| predicted protein [Populus trichocarpa] gi|222844525|gb|EEE82072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224128183|ref|XP_002320264.1| predicted protein [Populus trichocarpa] gi|222861037|gb|EEE98579.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225437714|ref|XP_002273228.1| PREDICTED: squamosa promoter-binding-like protein 12-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480217|ref|XP_003632418.1| PREDICTED: squamosa promoter-binding-like protein 12-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499594|ref|XP_003518623.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357442095|ref|XP_003591325.1| SQUAMOSA promoter binding protein [Medicago truncatula] gi|355480373|gb|AES61576.1| SQUAMOSA promoter binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|140055592|gb|ABO80947.1| Ankyrin [Medicago truncatula] Back     alignment and taxonomy information
>gi|357511495|ref|XP_003626036.1| SQUAMOSA promoter binding protein [Medicago truncatula] gi|355501051|gb|AES82254.1| SQUAMOSA promoter binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449518123|ref|XP_004166093.1| PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 12-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
TAIR|locus:2041329881 SPL1 "squamosa promoter bindin 0.630 0.494 0.550 1.6e-195
TAIR|locus:2101402927 SPL12 "squamosa promoter-bindi 0.635 0.473 0.559 4.3e-125
TAIR|locus:20373551035 SPL14 "squamosa promoter bindi 0.658 0.439 0.336 2.2e-66
TAIR|locus:2011706988 AT1G76580 [Arabidopsis thalian 0.479 0.335 0.328 3.5e-44
TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1267 (451.1 bits), Expect = 1.6e-195, Sum P(2) = 1.6e-195
 Identities = 255/463 (55%), Positives = 321/463 (69%)

Query:    36 VSEMPQQVSLPHDAR--GAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLG 93
             + + PQ+      AR  G   ++ +  Q+KMN+FDLND+YIDSDD   DVERSP P N  
Sbjct:   263 IEQAPQEELKQFSARQDGTATENRSEKQVKMNDFDLNDIYIDSDD--TDVERSPPPTNPA 320

Query:    94 TSSIDCPSWVRXXXXXXXXXXXXGNXXXXXXXXXXXXXXXXXRTDRIVFKLFGKEPNDFP 153
             TSS+D PSW+              +                 RT RIVFKLFGKEPN+FP
Sbjct:   321 TSSLDYPSWIHQSSPPQTSR---NSDSASDQSPSSSSEDAQMRTGRIVFKLFGKEPNEFP 377

Query:   154 LVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFXXXXXXXXXXX 213
             +VLR QILDWLSHSP+DMESYIRPGC++LTIYLRQAE AWEEL  DL F           
Sbjct:   378 IVLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETAWEELSDDLGFSLGKLLDLSDD 437

Query:   214 XFWTSGWVYARVQHQIAFIYNGQVVLDTSLPPRSNNYSKILSVKPIAVPASERAQFFVKG 273
               WT+GW+Y RVQ+Q+AF+YNGQVV+DTSL  +S +YS I+SVKP+A+ A+E+AQF VKG
Sbjct:   438 PLWTTGWIYVRVQNQLAFVYNGQVVVDTSLSLKSRDYSHIISVKPLAIAATEKAQFTVKG 497

Query:   274 INLGRSATRLLCAVEGKYMVQEATHELLD-DVDGFKELDEL-QCVNFSCSIPAVTGRGFI 331
             +NL +  TRLLC+VEGKY++QE TH+    + D FK+  E+ +CVNFSC +P ++GRGF+
Sbjct:   498 MNLRQRGTRLLCSVEGKYLIQETTHDSTTREDDDFKDNSEIVECVNFSCDMPILSGRGFM 557

Query:   332 EIEDHGFSSTFFPFIVAEED-VCSEIRMLESALEFNRTDADVERFGKIDTKNQAMDFIHE 390
             EIED G SS+FFPF+V E+D VCSEIR+LE+ LEF  TD+            QAMDFIHE
Sbjct:   558 EIEDQGLSSSFFPFLVVEDDDVCSEIRILETTLEFTGTDS----------AKQAMDFIHE 607

Query:   391 IGWLFHRSQSKSRLGHLDPNTDLFPLRRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLG 450
             IGWL HRS    +LG  DPN  +FPL RF+WLIEFSMD EWCAV++KLL++  DG V  G
Sbjct:   608 IGWLLHRS----KLGESDPNPGVFPLIRFQWLIEFSMDREWCAVIRKLLNMFFDGAV--G 661

Query:   451 EHPSLDLA-LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRL 492
             E  S   A L+EL LLHRAVRKNS+P+V++LLR++P +  + L
Sbjct:   662 EFSSSSNATLSELCLLHRAVRKNSKPMVEMLLRYIPKQQRNSL 704
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA;ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SMX9SPL1_ARATHNo assigned EC number0.61890.88420.6935yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
cd00204126 cd00204, ANK, ankyrin repeats; ankyrin repeats med 1e-05
pfam1279691 pfam12796, Ank_2, Ankyrin repeats (3 copies) 0.002
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information 
 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 34/124 (27%), Positives = 44/124 (35%), Gaps = 20/124 (16%)

Query: 464 LLHRAVRKNSRPLVDLLLRF-VPLEVSDRLGSENKALVDGVHKG------FLFR----PD 512
            LH A       +V LLL     +   D  G     L      G       L       +
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDG--RTPLHLAAKNGHLEIVKLLLEKGADVN 67

Query: 513 VIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYS 572
                G TP+H+AA ++G+ DV+  L          A  NARD  G TP   A   GH  
Sbjct: 68  ARDKDGNTPLHLAA-RNGNLDVVKLLLKHG------ADVNARDKDGRTPLHLAAKNGHLE 120

Query: 573 YIHL 576
            + L
Sbjct: 121 VVKL 124

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 691
KOG4412226 consensus 26S proteasome regulatory complex, subun 99.8
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 99.77
KOG4412226 consensus 26S proteasome regulatory complex, subun 99.74
PHA02791284 ankyrin-like protein; Provisional 99.73
PHA02741169 hypothetical protein; Provisional 99.73
PHA02791284 ankyrin-like protein; Provisional 99.72
PHA02875413 ankyrin repeat protein; Provisional 99.7
PHA02859209 ankyrin repeat protein; Provisional 99.7
PHA02743166 Viral ankyrin protein; Provisional 99.69
PHA02736154 Viral ankyrin protein; Provisional 99.67
PHA02874 434 ankyrin repeat protein; Provisional 99.66
PHA03100480 ankyrin repeat protein; Provisional 99.66
PHA02859209 ankyrin repeat protein; Provisional 99.65
PHA02795437 ankyrin-like protein; Provisional 99.65
PHA02878 477 ankyrin repeat protein; Provisional 99.65
PHA02875413 ankyrin repeat protein; Provisional 99.65
PHA02878477 ankyrin repeat protein; Provisional 99.64
PHA02946 446 ankyin-like protein; Provisional 99.64
PHA02798489 ankyrin-like protein; Provisional 99.64
KOG0520 975 consensus Uncharacterized conserved protein, conta 99.63
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 99.62
PHA02989494 ankyrin repeat protein; Provisional 99.61
PHA02874 434 ankyrin repeat protein; Provisional 99.61
KOG0514452 consensus Ankyrin repeat protein [General function 99.6
PHA02884300 ankyrin repeat protein; Provisional 99.6
PHA03100 480 ankyrin repeat protein; Provisional 99.6
KOG0510 929 consensus Ankyrin repeat protein [General function 99.59
PLN03192823 Voltage-dependent potassium channel; Provisional 99.59
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 99.58
PHA03095471 ankyrin-like protein; Provisional 99.58
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 99.57
PHA03095 471 ankyrin-like protein; Provisional 99.56
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 99.55
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 99.55
KOG0512228 consensus Fetal globin-inducing factor (contains a 99.54
KOG0508 615 consensus Ankyrin repeat protein [General function 99.54
KOG0508 615 consensus Ankyrin repeat protein [General function 99.54
PHA02876682 ankyrin repeat protein; Provisional 99.54
KOG0510 929 consensus Ankyrin repeat protein [General function 99.52
PHA02795437 ankyrin-like protein; Provisional 99.52
PHA02741169 hypothetical protein; Provisional 99.51
PHA02876 682 ankyrin repeat protein; Provisional 99.5
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 99.5
PHA02946 446 ankyin-like protein; Provisional 99.5
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 99.49
KOG0502296 consensus Integral membrane ankyrin-repeat protein 99.47
PHA02798 489 ankyrin-like protein; Provisional 99.46
PHA02989 494 ankyrin repeat protein; Provisional 99.45
KOG0502296 consensus Integral membrane ankyrin-repeat protein 99.43
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 99.41
PHA02917 661 ankyrin-like protein; Provisional 99.41
PHA02730672 ankyrin-like protein; Provisional 99.4
PHA02743166 Viral ankyrin protein; Provisional 99.4
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 99.39
PHA02884300 ankyrin repeat protein; Provisional 99.36
PHA02917 661 ankyrin-like protein; Provisional 99.36
KOG0514452 consensus Ankyrin repeat protein [General function 99.36
TIGR00870 743 trp transient-receptor-potential calcium channel p 99.36
PHA02736154 Viral ankyrin protein; Provisional 99.36
PHA02730672 ankyrin-like protein; Provisional 99.34
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 99.33
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 99.32
TIGR00870 743 trp transient-receptor-potential calcium channel p 99.32
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 99.3
PLN03192823 Voltage-dependent potassium channel; Provisional 99.29
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 99.29
PHA02792631 ankyrin-like protein; Provisional 99.28
KOG0512228 consensus Fetal globin-inducing factor (contains a 99.25
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 99.24
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 99.24
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 99.23
PHA02792 631 ankyrin-like protein; Provisional 99.21
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 99.19
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 99.18
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 99.18
KOG4214117 consensus Myotrophin and similar proteins [Transcr 99.14
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 99.13
KOG1710 396 consensus MYND Zn-finger and ankyrin repeat protei 99.11
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 99.05
KOG4214117 consensus Myotrophin and similar proteins [Transcr 99.05
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 99.04
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 99.04
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 98.98
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 98.98
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 98.95
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 98.89
KOG0506622 consensus Glutaminase (contains ankyrin repeat) [A 98.77
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 98.66
KOG1710 396 consensus MYND Zn-finger and ankyrin repeat protei 98.57
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 98.48
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 98.41
KOG07821004 consensus Predicted diacylglycerol kinase [Signal 98.32
KOG0522 560 consensus Ankyrin repeat protein [General function 98.28
KOG0705749 consensus GTPase-activating protein Centaurin gamm 98.27
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 98.26
KOG2384223 consensus Major histocompatibility complex protein 98.25
PF1360630 Ank_3: Ankyrin repeat 98.19
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.04
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 98.0
KOG0521785 consensus Putative GTPase activating proteins (GAP 97.97
PF1360630 Ank_3: Ankyrin repeat 97.94
KOG0705749 consensus GTPase-activating protein Centaurin gamm 97.85
KOG0522 560 consensus Ankyrin repeat protein [General function 97.83
KOG0783 1267 consensus Uncharacterized conserved protein, conta 97.82
KOG0520 975 consensus Uncharacterized conserved protein, conta 97.71
KOG3609 822 consensus Receptor-activated Ca2+-permeable cation 97.68
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 97.65
KOG0506622 consensus Glutaminase (contains ankyrin repeat) [A 97.11
KOG0511 516 consensus Ankyrin repeat protein [General function 97.09
KOG07821004 consensus Predicted diacylglycerol kinase [Signal 96.73
KOG3609 822 consensus Receptor-activated Ca2+-permeable cation 96.34
KOG0521785 consensus Putative GTPase activating proteins (GAP 96.25
KOG2505591 consensus Ankyrin repeat protein [General function 96.21
KOG0511 516 consensus Ankyrin repeat protein [General function 96.14
smart0024830 ANK ankyrin repeats. Ankyrin repeats are about 33 95.38
KOG2384223 consensus Major histocompatibility complex protein 95.08
smart0024830 ANK ankyrin repeats. Ankyrin repeats are about 33 94.57
KOG2505591 consensus Ankyrin repeat protein [General function 94.33
PF0183385 TIG: IPT/TIG domain; InterPro: IPR002909 This fami 93.87
cd0060390 IPT_PCSR IPT domain of Plexins and Cell Surface Re 91.28
cd0010289 IPT Immunoglobulin-like fold, Plexins, Transcripti 90.56
cd0117985 IPT_plexin_repeat2 Second repeat of the IPT domain 88.98
cd0117585 IPT_COE IPT domain of the COE family (Col/Olf-1/EB 88.25
cd0284981 CGTase_C_term Cgtase (cyclodextrin glycosyltransfe 83.89
cd0118094 IPT_plexin_repeat1 First repeat of the IPT domain 80.55
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.80  E-value=8.2e-20  Score=176.93  Aligned_cols=140  Identities=20%  Similarity=0.181  Sum_probs=118.6

Q ss_pred             cccchHHHHHHhcccHHHHHHHHhhhccCcccCCCCCchhhccCCCcHHHHHHHcCCHHHHHHHHhc-CCCCcccccccc
Q 005567          417 RRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRF-VPLEVSDRLGSE  495 (691)
Q Consensus       417 kR~~~lL~~Av~~g~~~vvk~LL~~l~~g~v~~~~~~~~~~~~~G~TpLH~Av~~g~~~~VelLL~~-ga~~~~d~~a~~  495 (691)
                      +..|++||+||..|+.++|++||..   .++..+     ++|..|+||||.|+..|+.++|+-|+.. |+          
T Consensus        36 qD~Rt~LHwa~S~g~~eiv~fLlsq---~nv~~d-----dkDdaGWtPlhia~s~g~~evVk~Ll~r~~a----------   97 (226)
T KOG4412|consen   36 QDGRTPLHWACSFGHVEIVYFLLSQ---PNVKPD-----DKDDAGWTPLHIAASNGNDEVVKELLNRSGA----------   97 (226)
T ss_pred             ccCCceeeeeeecCchhHHHHHHhc---CCCCCC-----CccccCCchhhhhhhcCcHHHHHHHhcCCCC----------
Confidence            3458899999999999999999974   333333     2366899999999999999999999988 75          


Q ss_pred             cccccccccCCccCCCccCCCCCChHHHHHHhcCCCHHHHHHhccCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHH
Q 005567          496 NKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIH  575 (691)
Q Consensus       496 ~~~~~~~~~~~~~~d~n~~d~~G~TPLHlAA~~~G~~evV~lLL~~p~~~g~gAd~na~D~~G~TPLh~A~~~Gh~~iv~  575 (691)
                                    ++|..+.+|.|+||+||. .|..+|+++|+++      ||.++.+|..|.||||-|+.-|+.++++
T Consensus        98 --------------dvna~tn~G~T~LHyAag-K~r~eIaqlLle~------ga~i~~kD~~~qtplHRAAavGklkvie  156 (226)
T KOG4412|consen   98 --------------DVNATTNGGQTCLHYAAG-KGRLEIAQLLLEK------GALIRIKDKQGQTPLHRAAAVGKLKVIE  156 (226)
T ss_pred             --------------CcceecCCCcceehhhhc-CChhhHHHHHHhc------CCCCcccccccCchhHHHHhccchhhHH
Confidence                          899999999999999999 8999999999999      9999999999999999999999999999


Q ss_pred             HHHHhhhcCC---CCCCceeeeC
Q 005567          576 LVQKKINKRP---NGGHVVVDIC  595 (691)
Q Consensus       576 lL~~k~~~~~---~~~~~~l~i~  595 (691)
                      +|+...+..+   .-|.++++.+
T Consensus       157 ~Li~~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  157 YLISQGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             HHHhcCCCCCcccccCccHHHHH
Confidence            9988654433   3455555554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG2505 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>smart00248 ANK ankyrin repeats Back     alignment and domain information
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] Back     alignment and domain information
>smart00248 ANK ankyrin repeats Back     alignment and domain information
>KOG2505 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold Back     alignment and domain information
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins Back     alignment and domain information
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT) Back     alignment and domain information
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) Back     alignment and domain information
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors Back     alignment and domain information
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain Back     alignment and domain information
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
2pnn_A273 Transient receptor potential cation channel subfa 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
2etb_A256 Transient receptor potential cation channel subfam 4e-06
2etb_A256 Transient receptor potential cation channel subfam 4e-04
3ljn_A364 Hypothetical protein; ankyrin, structural genomics 7e-06
3jxi_A260 Vanilloid receptor-related osmotically activated p 1e-05
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 4e-05
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 1e-04
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 8e-04
1n11_A437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 2e-04
3deo_A183 Signal recognition particle 43 kDa protein; chloro 2e-04
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 3e-04
1wdy_A285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 3e-04
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 5e-04
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 Back     alignment and structure
 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 35/162 (21%)

Query: 465 LHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPA---GLTP 521
           LH A+ + +  LV LL+             EN A V     G  F+     P    G  P
Sbjct: 105 LHIAIERRNMTLVTLLV-------------ENGADVQAAANGDFFKKTKGRPGFYFGELP 151

Query: 522 IHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKI 581
           + +AA       ++  L  +       A  +ARDS G+T               +   K 
Sbjct: 152 LSLAACT-NQLAIVKFLLQNSWQ---PADISARDSVGNTVLHALVEVADN---TVDNTKF 204

Query: 582 NKRPNGGH--VVVDICGVVPDSNIYQKQNNESTASFEIGQTP 621
                     +   +   +    I    N +       G TP
Sbjct: 205 VTSMYNEILILGAKLHPTLKLEEI---TNRK-------GLTP 236
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260 Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 691
d1n11a_408 d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta 7e-05
d1n11a_ 408 d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta 0.001
d1wdya_285 d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas 3e-04
d2fo1e1277 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele 8e-04
d1sw6a_301 d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker 9e-04
d1s70b_291 d.211.1.1 (B:) Myosin phosphatase targeting subuni 0.002
d1oy3d_255 d.211.1.1 (D:) Transcription factor inhibitor I-ka 0.004
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 7e-05
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 22/134 (16%)

Query: 465 LHRAVRKNSRPLVDLLLR------------FVPLEVSDRLGSENKALVDGVHKGFLFRPD 512
           LH   ++   P+ D+L++            + PL V+   G+         H+  +    
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 327

Query: 513 VIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYS 572
                G +P+H AA + G  D++  L      +   A  N   S G+TP   A+  G+ S
Sbjct: 328 ---KLGYSPLHQAAQQ-GHTDIVTLL------LKNGASPNEVSSDGTTPLAIAKRLGYIS 377

Query: 573 YIHLVQKKINKRPN 586
              +++   ++   
Sbjct: 378 VTDVLKVVTDETSF 391
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 Back     information, alignment and structure
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query691
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 99.84
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 99.82
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 99.8
d1n11a_408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 99.78
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 99.77
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 99.76
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 99.76
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 99.75
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 99.75
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 99.74
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 99.74
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 99.74
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 99.74
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 99.73
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 99.71
d1n11a_408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 99.7
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 99.7
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 99.69
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 99.68
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 99.68
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 99.67
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 99.66
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 99.66
d2ajaa1346 Hypothetical protein LPG2416 {Legionella pneumophi 99.65
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 99.63
d1k1aa_228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 99.63
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 99.6
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 99.59
d2ajaa1346 Hypothetical protein LPG2416 {Legionella pneumophi 99.59
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 99.58
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 99.55
d1k1aa_228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 99.51
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 99.51
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 99.42
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 99.42
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 99.4
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 99.39
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 99.17
d2cxka182 Calmodulin binding transcription activator 1 {Huma 95.84
d1qhoa181 Five domain "maltogenic" alpha-amylase (glucan 1,4 93.84
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.1e-19  Score=139.76  Aligned_cols=142  Identities=22%  Similarity=0.140  Sum_probs=112.7

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHC---CCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             89998755508999998763114765679997500004997098999980---999999999725999743333554320
Q 005567          422 LIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRK---NSRPLVDLLLRFVPLEVSDRLGSENKA  498 (691)
Q Consensus       422 lL~fAv~~g~~avvk~LL~~l~~g~v~~~~~~~~~~~l~G~TpLH~Av~~---g~~~iVelLL~~g~~~~~d~~a~~~~~  498 (691)
                      .|.-|+..+....+..++....+-..  . ......+..|.||||+|++.   ++.++|++|+++|+             
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~--~-~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-------------   72 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTE--K-IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-------------   72 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTS--B-CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-------------
T ss_pred             HHHHHHHHCCHHHHHHHHHCCCCCCC--C-CCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCC-------------
T ss_conf             99999995889999999986998677--7-7754578999826999998328998999999997499-------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf             00365578557996479999848989973099988999960599988765333267999999999999839999999999
Q 005567          499 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ  578 (691)
Q Consensus       499 ~~~~~~~~~~f~vn~~d~~G~TPLHlAA~~~G~~evV~~LL~~p~~~g~gA~~narD~~G~TPLh~A~~~Gh~~iv~lL~  578 (691)
                                 ++|.+|..|+||||+|+. .|+.+++++|++.      |++++.+|..|.||+|+|+.+||.+++++|.
T Consensus        73 -----------din~~d~~g~TpLh~A~~-~~~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~  134 (154)
T d1dcqa1          73 -----------NLDKQTGKGSTALHYCCL-TDNAECLKLLLRG------KASIEIANESGETPLDIAKRLKHEHCEELLT  134 (154)
T ss_dssp             -----------CTTCCCTTCCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             -----------CHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf             -----------733313121010001111-2333322122135------7550244789999999999939999999999


Q ss_pred             HHHHCCCCCCCCEEEECCCC
Q ss_conf             86412999997113408988
Q 005567          579 KKINKRPNGGHVVVDICGVV  598 (691)
Q Consensus       579 ~k~~~~~~~~~v~v~i~~~~  598 (691)
                      +.++.+. +.|..+++.|.+
T Consensus       135 ~~~~~~~-~~~~~~~~~w~~  153 (154)
T d1dcqa1         135 QALSGRF-NSHVHVEYEWRL  153 (154)
T ss_dssp             HHHTTCC-CSSCCCCCCCCC
T ss_pred             HHCCCCC-CCCHHHHCCCCC
T ss_conf             9388977-841132147767
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure