Citrus Sinensis ID: 005576

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690
MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA
cccHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccEEEEcccHHHHHcccccEEEEEcccccHHHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEEEEccccccccccEEEEEEcccccHHHHHHHHHHcHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHcccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHccccccEEccccccccHHccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHccccccccccccccccccccccccccHHHcccccccccccccccccEEEccccccc
MGSRKEEERNEKIIRGlmklppnrrcincnslgpqyvctnfWTFVCMTcsgihrefthrvksvsmskFTSQEVEALQNGGNQRAREIYLKDwdfqrqrlpdnsnvnKVRDFIKNVYvdrryaggktpdkppkdtqglgshldesrrassyhsysqsppydyqyedrrygKLGAvltrkpgsdrghyvgkisslvhspgrmseqMFEDRfanegscsrisdysvssggdpfrpgaqspnfqkdagfnsppvqlsrdVSSLKAnfkrdvdgiphpkrttslgsmgsfdsnsvslkscnsggltdvsehddqaagapldkistfpqshgpvnyggldlfeapvvpetvpstappidlfqlpetsaasvnmsemsqassvpstntyqpaqtsspsslnffqiteqpstailnrnpqelsipknegwatfdtppsaasipgteslshamvpanegssvksdqfpssntsmqwpafqnsgangpspssdpwsgnlhivqapavatsaqswnafddftshlpsegfkpnsephvdaympsptpDQYLAIVSQqetnddgnprvashdgppnmtvpsqadmgpsynpsmfplmgqmrthatehkstnpfdfpcdsdleqnnmfLDMSSLQaalpnaelpspflggatqswfpqnpvspfVQAAAQGglaymsgqspsaqlaniptqepvasvggnpfa
mgsrkeeernekiirglmklppnrRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDwdfqrqrlpdnsnvnkvrdFIKNVyvdrryaggktpdkppkdtqgLGSHLDEsrrassyhsysqsppydyqyEDRRYGKLGAVLtrkpgsdrghyVGKISslvhspgrMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKanfkrdvdgiphpkrttslgsmgsfdSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTqepvasvggnpfa
MGSrkeeernekiirGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRAssyhsysqsppydyqyEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA
************IIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSV********************AREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY*****************************************YEDRRYGKLGAVL********************************************************************************************************************************************************VNYGGLDLFEAPVVP**************************************************************************************************************************************************LHIVQAPAVATSAQSWNAFDD*****************************************************************************************************************************LGGATQSWFP*****PFVQ*************************************
***************GLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQR********VNKVRDFIKNVYVDRR**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NP**
**********EKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGK********************************PYDYQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAAS***************************SLNFFQITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVP*****************SMQWPAFQN***********PWSGNLHIVQAPAVATSAQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQQ************HDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQE***********
*******ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG*********************************************************************************************************************************************************SLGSMGSFDSN**********GLTDVS******AGAPLDKISTF*********GGLDLFEAPVVPETVPSTAPPIDLFQLPETSAAS********************************************************************************************************************************************************************************************NPRVASHDGPPNMTVPSQADMGP*Y**S****************STNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA
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iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVSQQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query690 2.2.26 [Sep-21-2011]
Q8RXE7649 Probable ADP-ribosylation yes no 0.928 0.987 0.487 1e-159
Q8K2K6561 Arf-GAP domain and FG rep yes no 0.171 0.210 0.408 8e-25
Q4KLH5561 Arf-GAP domain and FG rep yes no 0.171 0.210 0.408 9e-25
Q2TA45562 Arf-GAP domain and FG rep yes no 0.171 0.209 0.408 1e-24
P52594562 Arf-GAP domain and FG rep yes no 0.171 0.209 0.408 1e-24
O95081481 Arf-GAP domain and FG rep no no 0.143 0.205 0.405 1e-17
Q80WC7479 Arf-GAP domain and FG rep no no 0.143 0.206 0.405 2e-17
Q9FL69483 Probable ADP-ribosylation no no 0.211 0.302 0.306 4e-16
Q8IYB5467 Stromal membrane-associat no no 0.124 0.184 0.325 5e-13
Q5F413428 Stromal membrane-associat no no 0.162 0.261 0.285 1e-12
>sp|Q8RXE7|AGD14_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2 Back     alignment and function desciption
 Score =  561 bits (1445), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 340/697 (48%), Positives = 410/697 (58%), Gaps = 56/697 (8%)

Query: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRV 60
           MGS++EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCT FWTFVCM CSGIHREFTHRV
Sbjct: 2   MGSKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHRV 61

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KSVSMSKFTS+EVE LQNGGNQRAREIYLK+WD QRQRLP+NSN  +VR+FIKNVYV ++
Sbjct: 62  KSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKK 121

Query: 121 YAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPG 180
           YAG    DKP KD+Q   S  D +RRA+SYHSYSQSPPYDYQYE+RRYGK+    T K  
Sbjct: 122 YAGANDADKPSKDSQDHVSSEDMTRRANSYHSYSQSPPYDYQYEERRYGKIPLGFTGKSA 181

Query: 181 SDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ 240
           S +G +  K SS V+SPGR S+ MFED+F+NE S  R SDYSVSS GDPFR   QSPNFQ
Sbjct: 182 SVKGLH-AKASSFVYSPGRFSDHMFEDQFSNEDSAPRASDYSVSSAGDPFRSDIQSPNFQ 240

Query: 241 KDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGL 300
           ++A F SP  Q S    S     +    G  H +RTTS GS+ S DSN +S+KS  SGGL
Sbjct: 241 QEAEFRSPQFQHSNAPPS-----ENLFPGRQH-QRTTSSGSVRSVDSNFMSIKSYTSGGL 294

Query: 301 TDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPET 360
            +      Q  G+   K S                     VP    ST  PIDLFQLP  
Sbjct: 295 GEAVSESRQNTGSQQGKTSNH-------------------VPLVAESTKAPIDLFQLPGA 335

Query: 361 SAA-SVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFF--QITEQPSTAILNRNPQELSIP 417
             A SV+  + S A   P  N  Q  QT S +  N F   + +QP++      P ELS P
Sbjct: 336 PVAQSVDTFQPSIAPRSPPVNLQQAPQTYSFTPANSFAGNLGQQPTS-----RPSELSAP 390

Query: 418 KNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANG 477
           KNEGWA+FD P     +P  +S +    P +    +K ++    +TSMQ P + ++    
Sbjct: 391 KNEGWASFDNP-----MPAAKSTNVITSPGDFQLELKIEEILQPSTSMQLPPYPSTVDQH 445

Query: 478 PSPSSDPWSGNLHIVQAPAVATSAQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSP--T 535
                 PW  +L  V    V  + Q WNAF D     P +  + N    VD    S   T
Sbjct: 446 ALSIPSPWQEDLSNV-LKDVVDNPQPWNAFPDSIEANPLDSSR-NIHQQVDGASTSSYNT 503

Query: 536 PDQYLAIVSQQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEH 595
             Q+L     +E ++DG        G      P    M PSY+   +        H  E 
Sbjct: 504 DHQHLESQVLEELSNDGTQTTRIPAGSSAFGFPGNIGMAPSYSEEAW-------QHVNEQ 556

Query: 596 KSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFV--Q 653
           KS NPFD P DS+ + N+MFLDMSSLQ ALP+ + P  FL G +Q W   + V  ++   
Sbjct: 557 KSANPFDLPYDSEFDSNDMFLDMSSLQGALPDIQTPQAFLNGVSQPWLAADSVPSYLPAP 616

Query: 654 AAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA 690
           A AQGGLAYM+GQ+ +    N   Q PVA  GGNPFA
Sbjct: 617 AVAQGGLAYMAGQAST----NSAAQGPVAFTGGNPFA 649
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q8K2K6|AGFG1_MOUSE Arf-GAP domain and FG repeat-containing protein 1 OS=Mus musculus GN=Agfg1 PE=1 SV=2 Back     alignment and function description
>sp|Q4KLH5|AGFG1_RAT Arf-GAP domain and FG repeat-containing protein 1 OS=Rattus norvegicus GN=Agfg1 PE=1 SV=1 Back     alignment and function description
>sp|Q2TA45|AGFG1_BOVIN Arf-GAP domain and FG repeat-containing protein 1 OS=Bos taurus GN=AGFG1 PE=2 SV=1 Back     alignment and function description
>sp|P52594|AGFG1_HUMAN Arf-GAP domain and FG repeat-containing protein 1 OS=Homo sapiens GN=AGFG1 PE=1 SV=2 Back     alignment and function description
>sp|O95081|AGFG2_HUMAN Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2 Back     alignment and function description
>sp|Q80WC7|AGFG2_MOUSE Arf-GAP domain and FG repeat-containing protein 2 OS=Mus musculus GN=Agfg2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function description
>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query690
224123950672 predicted protein [Populus trichocarpa] 0.969 0.995 0.629 0.0
255580246692 HIV-1 rev binding protein, hrbl, putativ 0.979 0.976 0.599 0.0
296085867695 unnamed protein product [Vitis vinifera] 0.976 0.969 0.614 0.0
359480998677 PREDICTED: probable ADP-ribosylation fac 0.950 0.968 0.606 0.0
307136134674 GTPase activating protein [Cucumis melo 0.931 0.954 0.546 0.0
449437662673 PREDICTED: probable ADP-ribosylation fac 0.931 0.955 0.540 0.0
356573913697 PREDICTED: probable ADP-ribosylation fac 0.960 0.951 0.511 0.0
356514062741 PREDICTED: probable ADP-ribosylation fac 0.971 0.904 0.501 0.0
356506188676 PREDICTED: probable ADP-ribosylation fac 0.966 0.986 0.526 0.0
297843656668 hypothetical protein ARALYDRAFT_470937 [ 0.936 0.967 0.480 1e-158
>gi|224123950|ref|XP_002319204.1| predicted protein [Populus trichocarpa] gi|222857580|gb|EEE95127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/693 (62%), Positives = 513/693 (74%), Gaps = 24/693 (3%)

Query: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRV 60
           MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTF+C TCSGIHREFTHRV
Sbjct: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFICTTCSGIHREFTHRV 60

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KSVSMSKFTSQEVEALQNGGNQRAREIYLKDW+ QRQRLPDNS V+KVR+FIK+VYVD++
Sbjct: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWNQQRQRLPDNSKVDKVREFIKDVYVDKK 120

Query: 121 YAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPG 180
           YAGG T DKPP+D Q + SH DE+RRA SYHSYSQSPPYD+QYEDRRYGK    LTRKPG
Sbjct: 121 YAGGNTSDKPPRDLQRIRSHEDETRRACSYHSYSQSPPYDFQYEDRRYGKQTNTLTRKPG 180

Query: 181 SDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ 240
           SDRG  VGK++S + SP R++E++FEDRFANEGS SR+SDYSVSSGGDP R GA+SPNFQ
Sbjct: 181 SDRGLNVGKMASFICSPTRLNERVFEDRFANEGSVSRVSDYSVSSGGDPVRSGAESPNFQ 240

Query: 241 KDAGFNSPPVQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGL 300
           KD  F SPP+Q SRD S       + +   P  +RTTSLGSMGSFDS SVS+KS NSG L
Sbjct: 241 KDIAF-SPPIQPSRDASLC----YQMILNCPSIQRTTSLGSMGSFDSLSVSIKSYNSGSL 295

Query: 301 TDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPET 360
            D+     QAAG P + +  FP S    ++  LDLF+ PV PE     APPIDLFQLP T
Sbjct: 296 LDIVAEAGQAAGNPQENMPAFPVS-SVSSHASLDLFKEPVAPEPASPMAPPIDLFQLPAT 354

Query: 361 S-AASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQITEQPSTAILNRNPQELSIPKN 419
           S A SV++ ++  ASS+   N YQP+QTS PS+L  +Q  +Q  T++  ++P   S+PKN
Sbjct: 355 SPAPSVDLFQVPPASSI---NLYQPSQTSLPSTLGSYQ--QQSVTSLDEKSPHS-SLPKN 408

Query: 420 EGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANGPS 479
           EGWATFD P   AS PG E+L+ ++ P+N GSS   DQ PS +TSMQWP FQNS  +  S
Sbjct: 409 EGWATFDGPQPIASTPGPENLTSSVGPSNAGSS-NFDQVPSLHTSMQWPPFQNSVDHSSS 467

Query: 480 PSSDPWSGNLHIVQAPAVATSAQSWNA--FDDFTSHLPSEGFKPNSEPHVDAYMPSPTPD 537
              DPW G++H VQA    TS+Q+W+A  FDD  + +P EG K +SEP    Y PSPT D
Sbjct: 468 SVPDPWLGDVHSVQATG-NTSSQNWSAFEFDDSVAGIPLEGIKQSSEPQT-LYNPSPTAD 525

Query: 538 QYLAIVSQQETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKS 597
           Q +  V  Q+ N DG  R A +   P  + PS    GPSY PS  PL+    +HA +HKS
Sbjct: 526 QLINCV-LQDFNKDGIQRTAYNGVLPGPSEPSDIVAGPSYTPSGHPLV----SHA-DHKS 579

Query: 598 TNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLGGATQSWFPQNPVSPFVQAAAQ 657
            NPFD P +SDLE +NMF+DMSSL+AALPNA  PS FLGG TQ WFPQ+    ++ AA Q
Sbjct: 580 INPFDLPYESDLEPSNMFVDMSSLEAALPNANSPSSFLGGVTQPWFPQDLAMTYIPAAPQ 639

Query: 658 GGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA 690
           GGLAYM+GQ+PS QL N+ TQ PVASVGGNPFA
Sbjct: 640 GGLAYMAGQAPSPQLGNVQTQGPVASVGGNPFA 672

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255580246|ref|XP_002530953.1| HIV-1 rev binding protein, hrbl, putative [Ricinus communis] gi|223529468|gb|EEF31425.1| HIV-1 rev binding protein, hrbl, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296085867|emb|CBI31191.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480998|ref|XP_003632552.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|307136134|gb|ADN33979.1| GTPase activating protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449437662|ref|XP_004136610.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Cucumis sativus] gi|449522163|ref|XP_004168097.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356573913|ref|XP_003555100.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Glycine max] Back     alignment and taxonomy information
>gi|356514062|ref|XP_003525726.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Glycine max] Back     alignment and taxonomy information
>gi|356506188|ref|XP_003521869.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Glycine max] Back     alignment and taxonomy information
>gi|297843656|ref|XP_002889709.1| hypothetical protein ARALYDRAFT_470937 [Arabidopsis lyrata subsp. lyrata] gi|297335551|gb|EFH65968.1| hypothetical protein ARALYDRAFT_470937 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query690
TAIR|locus:2125697628 AT4G32630 [Arabidopsis thalian 0.772 0.848 0.295 4.8e-46
TAIR|locus:2142115602 NIG "NSP (nuclear shuttle prot 0.701 0.803 0.316 5.6e-45
DICTYBASE|DDB_G0275571 930 DDB_G0275571 "Arf GTPase activ 0.173 0.129 0.424 3.1e-21
UNIPROTKB|P52594562 AGFG1 "Arf-GAP domain and FG r 0.147 0.181 0.413 6.3e-20
UNIPROTKB|D4A4Q8529 Agfg1 "Arf-GAP domain and FG r 0.147 0.192 0.413 2e-19
RGD|1560041560 Agfg1 "ArfGAP with FG repeats 0.147 0.182 0.413 3.3e-19
RGD|1310527561 Agfg1-ps1 "ArfGAP with FG repe 0.147 0.181 0.413 2.3e-18
UNIPROTKB|B8ZZY2541 AGFG1 "Arf-GAP domain and FG r 0.147 0.188 0.413 4e-18
ZFIN|ZDB-GENE-040426-1520547 agfg1b "ArfGAP with FG repeats 0.152 0.191 0.420 4.4e-18
MGI|MGI:1333754561 Agfg1 "ArfGAP with FG repeats 0.147 0.181 0.413 6.5e-17
TAIR|locus:2125697 AT4G32630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 177/600 (29%), Positives = 275/600 (45%)

Query:    17 LMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEAL 76
             L+KLP NRRCINCNSLGPQYVC+ FWTFVC+ CSGIHREFTHRVKSVSM+KFT+ EV AL
Sbjct:    14 LLKLPENRRCINCNSLGPQYVCSTFWTFVCVNCSGIHREFTHRVKSVSMAKFTADEVSAL 73

Query:    77 QNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQG 136
             + GGN+RAR+IY K+WD  R   PD SN+ K+RDFI++VYVD+RY+     DK  +    
Sbjct:    74 RAGGNERARQIYFKEWDAHRDGYPDRSNIFKLRDFIRSVYVDKRYSSS---DKISQQKSD 130

Query:   137 LGSHLDESRRAXXXXXXXXXXXXXXXXEDRRY---GKLGAVLTRKPGSDRGHYVGKISSL 193
             +     ES++                 +  R    G+ G+   R    D+ H    ++  
Sbjct:   131 VTEDYRESKKTSAHVLGSRSLHSVDKSDIERSSAAGRSGSESLRFYFDDKNHKQQHVTHN 190

Query:   194 VHSPGRMSEQM-FE---DRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQKDAGFNSPP 249
               S G     + FE   DRF ++GS  R      S G    +    S N  KD   + P 
Sbjct:   191 PRSRGLPKSPIRFEIVDDRFRDDGSVKRYDARKDSRGSS--KSLDLSSN--KDMP-SFPI 245

Query:   250 VQLSRDVSSLKANFKRDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDDQ 309
             V+ + +++ +K   K+D    P   + T+     S +   +     +      VSE  D+
Sbjct:   246 VRHTSELNIVKVEKKKD----PVNNQMTA-----SSEKMEIPRSLIDD---VPVSELSDE 293

Query:   310 AAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETS--AASVNM 367
                  +   S  P S         +  EA +   +VPS  P  + ++L  TS  +++ N 
Sbjct:   294 GI---IKNSSEIPASLKTTEEPAPNSLEALLFGSSVPSVVPGTNNYELWNTSDISSTENY 350

Query:   368 SEMSQAS-SVPSTNTYQPAQTSSPSSLNFFQITEQPSTAIL--NRNPQELS-IPKNEGWA 423
             + ++  + ++P       +  +SP++ +    +  P   +   N N +E + +  N+G +
Sbjct:   351 TAVNLGTQTMPGIPDSVTSFATSPTTAHAHSGSSGPVVPVAPDNLNTKETATLANNQGPS 410

Query:   424 TFDTPPSAASIP------GTESLSHAMVPANEGSSVKSDQFPSSNTSMQWPAFQNSGANG 477
              F    +  +I       G+E        ++   ++  D F +   S   P   +   +G
Sbjct:   411 DFSMEQTTLAITDYAHGVGSEHHQDDETQSSIRKALPEDLF-TGGFSFA-PQQVHGQHHG 468

Query:   478 PSPSSDPWSGNLHIVQAPAVAT-SAQSWNAFD---DFTS-----HLPSEGF-KPNSEPHV 527
                    +    + VQA    T +A++ N FD   D T+       P+  + +    PHV
Sbjct:   469 MGYGMQYYQ---YPVQAMGALTYTAKAANPFDLSYDDTAPNQTPQFPTMAYVQGGGLPHV 525

Query:   528 DA---YMPSPTP--DQYLAIVSQQETN----DDGNPRVASHDGPPN-MTVPSQADMGPSY 577
              +   Y  S +P  D    + SQ   +       +P +ASH  P   M   SQ +M PS+
Sbjct:   526 SSPIGYSDSSSPAADSIGLMTSQSPFHATALSPNSPALASHLSPGALMGQQSQVNMSPSF 585
GO:0005634 "nucleus" evidence=ISM
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
TAIR|locus:2142115 NIG "NSP (nuclear shuttle protein)-interacting GTPase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275571 DDB_G0275571 "Arf GTPase activating protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P52594 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D4A4Q8 Agfg1 "Arf-GAP domain and FG repeat-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1560041 Agfg1 "ArfGAP with FG repeats 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1310527 Agfg1-ps1 "ArfGAP with FG repeats 1, pseudogene 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZZY2 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1520 agfg1b "ArfGAP with FG repeats 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1333754 Agfg1 "ArfGAP with FG repeats 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXE7AGD14_ARATHNo assigned EC number0.48780.92890.9876yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query690
PLN03131705 PLN03131, PLN03131, hypothetical protein; Provisio 0.0
PLN03119648 PLN03119, PLN03119, putative ADP-ribosylation fact 1e-176
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 1e-41
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 3e-22
COG5347319 COG5347, COG5347, GTPase-activating protein that r 9e-14
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 3e-05
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  795 bits (2053), Expect = 0.0
 Identities = 423/708 (59%), Positives = 502/708 (70%), Gaps = 21/708 (2%)

Query: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRV 60
           MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQ+VCTNFWTF+CMTCSGIHREFTHRV
Sbjct: 1   MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRV 60

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KSVSMSKFTSQ+VEALQNGGNQRAREIYLKDWD QRQRLPDNS V+K+R+FIK++YVD++
Sbjct: 61  KSVSMSKFTSQDVEALQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKK 120

Query: 121 YAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYDYQYEDRRYGKLGAVLTRKPG 180
           YAGGKT DKPP+D Q + SH DE+RRA SYHSYSQSPPYD+QYEDRRYGK   +LTRKPG
Sbjct: 121 YAGGKTHDKPPRDLQRIRSHEDETRRACSYHSYSQSPPYDFQYEDRRYGKQAGILTRKPG 180

Query: 181 SDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ 240
           SDRG  VGK++S + SP R++++MFEDRFANEGS S +SDYSVSSGGD  R GA+SPNFQ
Sbjct: 181 SDRGLNVGKMASFICSPTRLNDRMFEDRFANEGSVSGVSDYSVSSGGDLVRSGAESPNFQ 240

Query: 241 KDAGFNSPPVQLSRDVSS-----------LKANFKRDVDGIPHPKRTTSLGSMGSFDSNS 289
           KD  F SPP+Q  +D+               A  K+  +G PH +R+ SLGS+GSFDS S
Sbjct: 241 KDIAF-SPPIQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQRSASLGSIGSFDSLS 299

Query: 290 VSLKSCNSGGLTDVSEHDDQAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTA 349
           VS+KS NSG L D+    +QAAG   DK+  FP+  G  ++  LD F+APV PE     A
Sbjct: 300 VSIKSFNSGSLADIVAEAEQAAGNHQDKMPAFPRMAGSGSHASLDHFKAPVAPEAAAPMA 359

Query: 350 PPIDLFQLPETS-AASVNMSEMSQASSVPSTNTYQPAQTSSPSSLNFFQ-ITEQPSTAIL 407
           PPIDLFQLP TS A  V++ E+      P+ N YQP QTS PSS++ F  IT+Q S   L
Sbjct: 360 PPIDLFQLPATSPAPPVDLFEIPPLDPAPAINAYQPPQTSLPSSIDLFGGITQQQSINSL 419

Query: 408 NRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQW 467
           +    ELSIPKNEGWATFD     AS PG E+L+   +  +   S   DQ PS +  MQW
Sbjct: 420 DEKSPELSIPKNEGWATFDGIQPIASTPGNENLTPFSIGPSMAGSANFDQVPSLDKGMQW 479

Query: 468 PAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQSWNAF--DDFTSHLPSEGFKPNSEP 525
           P FQNS     +    PW G+LH V+AP   TSAQ+WNAF  DD  + +P EG K +SEP
Sbjct: 480 PPFQNSSDEESASGPAPWLGDLHNVEAPD-NTSAQNWNAFEFDDSVAGIPLEGIKQSSEP 538

Query: 526 HVDAYMPSPTPDQYLAIVSQQETNDDGNPRVASH--DGPPNMTVPSQADMGPSYNPSMFP 583
              A    PT DQ +   + ++ N DG  R A H     P +  PS     PSY P   P
Sbjct: 539 QT-AANMPPTADQLIGCKALEDFNKDGIKRTAPHGQGELPGLDEPSDILAEPSYTPPAHP 597

Query: 584 LMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNAELPSPFLG-GATQSW 642
           +M   ++HA +HKS NPFD P DSDLE  NMFLDMSSL+AALP+A LPS FLG G T+ W
Sbjct: 598 IMEHAQSHANDHKSINPFDLPYDSDLEPGNMFLDMSSLEAALPDAHLPSAFLGSGMTEPW 657

Query: 643 FPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA 690
           FPQ+    ++ AA QGGLAYM+GQ+P+ QL N+ TQ PVA VGGNPFA
Sbjct: 658 FPQDLAMTYIPAAPQGGLAYMAGQAPNPQLGNVQTQGPVAFVGGNPFA 705

Length = 705
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 690
PLN03131705 hypothetical protein; Provisional 100.0
PLN03119648 putative ADP-ribosylation factor GTPase-activating 100.0
KOG0702524 consensus Predicted GTPase-activating protein [Sig 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.97
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.94
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.92
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.91
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.89
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.8
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.63
KOG0818669 consensus GTPase-activating proteins of the GIT fa 99.61
PLN03131705 hypothetical protein; Provisional 96.95
PLN03119648 putative ADP-ribosylation factor GTPase-activating 94.33
KOG0702524 consensus Predicted GTPase-activating protein [Sig 93.2
KOG0521785 consensus Putative GTPase activating proteins (GAP 89.05
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.8e-203  Score=1643.53  Aligned_cols=686  Identities=61%  Similarity=0.998  Sum_probs=664.6

Q ss_pred             CCchhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecceeeeehhhhhhhhcCCcceeeeccCCCCHHHHHHHHhcC
Q 005576            1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGG   80 (690)
Q Consensus         1 M~srke~Er~ekiLr~Llk~PgNk~CADCGa~~P~WaSvnfGVFVCi~CSGIHR~LGhRVKSItLD~Wt~eEV~~Lq~gG   80 (690)
                      |++||++||++++|++|+++|+|++|||||+++|+|||++||||||++|+||||+||||||||+||+|+++||++|+.+|
T Consensus         1 m~SkkqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLghRVKSVTLD~WtdeEV~~Mk~gG   80 (705)
T PLN03131          1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRVKSVSMSKFTSQDVEALQNGG   80 (705)
T ss_pred             CcchHHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccCcccccccCCCCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCCCccCCCCCccccccCCCCCCCCCCCCcc
Q 005576           81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTPDKPPKDTQGLGSHLDESRRASSYHSYSQSPPYD  160 (690)
Q Consensus        81 N~raNeiwea~~d~~r~~~P~~sd~~krreFIraKY~eKrF~~~k~~DkPpr~~q~l~~~~~e~rRsssy~s~sQsPp~d  160 (690)
                      |+++|+|||++|+..+.++|...+.+++|+|||.|||+|||+.....++|+++.+.++.++.++||.++||+++|||||+
T Consensus        81 N~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~d~pprd~q~~r~~e~e~rr~~syh~~SqSPpY~  160 (705)
T PLN03131         81 NQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGKTHDKPPRDLQRIRSHEDETRRACSYHSYSQSPPYD  160 (705)
T ss_pred             cHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCCCCCCCchhhhhhhcccccccccccccCCCcCCCcc
Confidence            99999999999998877888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhccccccccccCCCCCCCCCCCCCCCCcccCCCCcchhhhhcccccCCCCcccccccccCCCCCCCCCCCCCCcc
Q 005576          161 YQYEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFRPGAQSPNFQ  240 (690)
Q Consensus       161 ~~yedrr~~k~~~~l~Rkpgsd~~~~~Gk~ss~~~sP~r~s~~~~~DRfa~e~s~~r~sd~~~s~~g~~~~~~~~sp~~~  240 (690)
                      |+||||||||+...++|+||+++++|.|||++|++||+|+.++|+||||+||++++|++||+++++|+++|.+.+|||||
T Consensus       161 ~~yedrRygk~~~~~~R~pg~d~~~~~~k~~~~~~SP~r~~d~~~eDrf~ne~~~~r~~d~s~ss~~~~~r~~~~SP~~~  240 (705)
T PLN03131        161 FQYEDRRYGKQAGILTRKPGSDRGLNVGKMASFICSPTRLNDRMFEDRFANEGSVSGVSDYSVSSGGDLVRSGAESPNFQ  240 (705)
T ss_pred             cccccccccccccccccCCccccccccccccccccCchhhhhhhhhcccccCCCCcccccccccccccccccCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCcccccccccccCCcc------------cCCCCCCCCCcccccCCccccCCCccccccccCCCCccCCCCCc
Q 005576          241 KDAGFNSPPVQLSRDVSSLKANFK------------RDVDGIPHPKRTTSLGSMGSFDSNSVSLKSCNSGGLTDVSEHDD  308 (690)
Q Consensus       241 k~~~~ssp~~~~~~~i~~~~~~~~------------~~~~~~~~~qrt~ss~s~~s~~~~~~~~k~~~s~sl~d~~~~~~  308 (690)
                      ||.. +||||+++|||| |+|++.            +.++|++++|||+|+|||||+||+++++|+++|+|||||.+|++
T Consensus       241 k~~~-~Sp~v~p~r~il-g~n~~~~~v~~~s~~~~~~~~~~~~~~Qrt~Ssgs~gS~dg~s~s~Ks~~s~sL~D~~~e~~  318 (705)
T PLN03131        241 KDIA-FSPPIQPPKDIL-GEDVQQRRIDLFSAALCKQGAEGCPHIQRSASLGSIGSFDSLSVSIKSFNSGSLADIVAEAE  318 (705)
T ss_pred             cccC-CCCCcccchhhc-cccccccccCCCcccccccccccccccccccccCcccccCCCccceeecccccccccccCcc
Confidence            9975 578998899999 666533            45788999999999999999999999999999999999999999


Q ss_pred             cCcCCCCCcccccCCCCCCCCcCcccccCCCCCCCCCCCCCCCCCccCCCccccc-cccccccccCCCCCCCCCCCCCCC
Q 005576          309 QAAGAPLDKISTFPQSHGPVNYGGLDLFEAPVVPETVPSTAPPIDLFQLPETSAA-SVNMSEMSQASSVPSTNTYQPAQT  387 (690)
Q Consensus       309 ~~~~~~q~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlf~~p~~~~a-~vd~f~~~~~~~~~s~~~~q~~q~  387 (690)
                      ++++++|.|+.++++..+.+.+.++|+|++||+|++++.++++|||||+|+|+.| +|||||-+++..++++|.+|+.||
T Consensus       319 ~~~~~~q~k~~~~~~~~~~~~~~s~d~f~~~v~p~~~~~~a~pIDLFqlp~ts~a~~vdlf~~s~l~~~p~~n~~q~~qt  398 (705)
T PLN03131        319 QAAGNHQDKMPAFPRMAGSGSHASLDHFKAPVAPEAAAPMAPPIDLFQLPATSPAPPVDLFEIPPLDPAPAINAYQPPQT  398 (705)
T ss_pred             ccccccccccCCccccccccccccccccccccccccccccCCchhhhhccCCCCCCcccccccCcccCCCccccCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999988 999999999999999999999999


Q ss_pred             CCCCCcccc-cccCCCccccccCCCcCCCCCCCCCcccccCCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcCCC
Q 005576          388 SSPSSLNFF-QITEQPSTAILNRNPQELSIPKNEGWATFDTPPSAASIPGTESLSHAMVPANEGSSVKSDQFPSSNTSMQ  466 (690)
Q Consensus       388 ~~~~~~d~f-~~~~~~~~~~~~~~~~~~~~p~n~GWAtfd~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  466 (690)
                      +.+++|||| +|+||++++|+|++++||++||||||||||+++.++|++|++||+..+||....-+.+||.+.++.++||
T Consensus       399 s~p~~~dlfag~~qqq~~~s~~~~~~~~s~pknegwa~fd~~~p~~s~~~~~n~t~~~v~~~~~~~~~~d~v~~~~~~~q  478 (705)
T PLN03131        399 SLPSSIDLFGGITQQQSINSLDEKSPELSIPKNEGWATFDGIQPIASTPGNENLTPFSIGPSMAGSANFDQVPSLDKGMQ  478 (705)
T ss_pred             cCCccccccccccccCccccccccCcccCCccccCcccccCCCcccccCCcccccccccccccccCcchhhccccccccc
Confidence            999999999 9999999999999999999999999999998888899999999988899966644679999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCCCCCcccccccccccccccccccc--cccCCCCCCCCCCCCCCcccCCCCCCCCCcchhhcc
Q 005576          467 WPAFQNSGANGPSPSSDPWSGNLHIVQAPAVATSAQSWNAFD--DFTSHLPSEGFKPNSEPHVDAYMPSPTPDQYLAIVS  544 (690)
Q Consensus       467 ~~~~~~s~~~~~~~~~d~w~~~~~~~~~~~~~~~~q~WnaF~--ds~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~  544 (690)
                      ||+|+++++++++++|++|++++||||+|.+ +++|+||||+  |+++++||+++++++++|++++++++ .+||+++++
T Consensus       479 ~Pp~~~~~~~~s~s~~~pW~~~~~~V~~~~~-~~~q~WnAF~~~ds~~~~~l~~~~~~s~~q~~~~~~~t-~~q~~~~~~  556 (705)
T PLN03131        479 WPPFQNSSDEESASGPAPWLGDLHNVEAPDN-TSAQNWNAFEFDDSVAGIPLEGIKQSSEPQTAANMPPT-ADQLIGCKA  556 (705)
T ss_pred             cCCCcccccccccccCCcccccchhcccCCc-cCccccccccccccccccccccccccccccccccCCCC-ccccccccc
Confidence            9999999999999999999999999999986 9999999999  99999999999999998887665555 459999999


Q ss_pred             ccccCCCCCCcccCCCC--CCCCCCCCCCccCCCCCCCCCCccccccccccccCCCCCCCCCCCccccccccchhhhhHH
Q 005576          545 QQETNDDGNPRVASHDG--PPNMTVPSQADMGPSYNPSMFPLMGQMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQ  622 (690)
Q Consensus       545 ~q~~~~d~~~~~ap~~~--~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~ks~NPFDlp~dsd~e~~~mFmDmsSLQ  622 (690)
                      +||+++||++|+||+++  +++|++|+.+|+||+|+|+++|+||++++|+++|||+||||||||||+|++||||||||||
T Consensus       557 ~~d~~~d~~~r~~p~~~~~~~g~~~~~~~~~~ps~~~~~~~~~~~~~s~~~~~ks~npfdl~~dsd~~~~~mf~d~sslq  636 (705)
T PLN03131        557 LEDFNKDGIKRTAPHGQGELPGLDEPSDILAEPSYTPPAHPIMEHAQSHANDHKSINPFDLPYDSDLEPGNMFLDMSSLE  636 (705)
T ss_pred             ccccccccccccCCCCCcCCCCCCCCCccccCCCCCccccccccccccccCccCCCCCcCCccccccCcccceeehHHHH
Confidence            99999999999999999  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCCCCCccC-CCCcCCCCCCCCCcccccCCCCCccccccCCCCccccCCCCCCCcccCCCCCCC
Q 005576          623 AALPNAELPSPFLG-GATQSWFPQNPVSPFVQAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA  690 (690)
Q Consensus       623 aaLP~~~lp~~f~g-g~~e~W~~qn~~~~yips~~qGGl~~ma~q~p~s~l~ni~~~~~~a~~~gNPFa  690 (690)
                      |||||+|||++||| |||||||+||++|+|||+|+||||+|||||+|++||.|+++||||||+||||||
T Consensus       637 ~~lp~~~~~~~f~g~~~tepw~~~~~~~~yip~~pqggl~y~agq~~~~~~~~~~~~~~~af~~~npf~  705 (705)
T PLN03131        637 AALPDAHLPSAFLGSGMTEPWFPQDLAMTYIPAAPQGGLAYMAGQAPNPQLGNVQTQGPVAFVGGNPFA  705 (705)
T ss_pred             hhcCCCCCchhhhcCCCCCccccCCCcccccCCCCCCCchhhcccCCcchhhhhhccCccccCCCCCCC
Confidence            99999999999999 999999999999999999999999999999999999999999999999999997

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query690
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 1e-18
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 3e-18
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 1e-10
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 2e-10
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 4e-08
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 8e-08
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 1e-07
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 1e-07
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 1e-07
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 1e-07
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 2e-07
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 3e-07
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 4e-07
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 2e-05
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 2e-05
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 3e-05
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 5e-04
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure 
Iteration: 1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 20  LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQ 77
           LP NR+C +C+  GP YV     +FVC +CSG  R     HRVKS+SM+ FT QE+E LQ
Sbjct: 17  LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQ 76
Query: 78  NGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 121
             GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R+
Sbjct: 77  KHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 120
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query690
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 9e-52
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 2e-27
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 6e-27
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 1e-26
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 3e-26
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 1e-25
2owa_A138 Arfgap-like finger domain containing protein; zinc 4e-24
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 3e-23
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 6e-23
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 2e-22
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 8e-20
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 1e-19
3o47_A329 ADP-ribosylation factor GTPase-activating protein 1e-17
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 5e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
 Score =  174 bits (443), Expect = 9e-52
 Identities = 52/139 (37%), Positives = 83/139 (59%), Gaps = 8/139 (5%)

Query: 3   SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF--THRV 60
            RK+EE++ K++R +  LP NR+C +C+  GP YV     +FVC +CSG  R     HRV
Sbjct: 5   KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRV 64

Query: 61  KSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120
           KS+SM+ FT QE+E LQ  GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R
Sbjct: 65  KSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKR 124

Query: 121 YAGGKTPDKPPKDTQGLGS 139
           +        PP+  + + S
Sbjct: 125 WY------VPPEQAKVVAS 137
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 690
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 5e-34
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (311), Expect = 5e-34
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 11  EKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSK 67
           ++II  + ++  N  C +C +  P ++ TN     C+ CSGIHRE      R++S+++  
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 68  FTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYA 122
             + E+   +N GN    EI       +    P+  S++   +D+I   Y++RRYA
Sbjct: 63  LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYA 118

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query690
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 93.69
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-41  Score=257.07  Aligned_cols=116  Identities=29%  Similarity=0.536  Sum_probs=106.0

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf             999999976599998776889999990580201403132344330499---62222004888989999998129289999
Q 005576           10 NEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGNQRARE   86 (690)
Q Consensus        10 nekiLr~Llk~pgNk~CADCGa~~PtWaSinfGVFICi~CSGIHR~LG---hrVKSIsLDkWs~eEV~~Lq~gGN~~ANe   86 (690)
                      ++++|++|++.|+|++|||||+++|+|||+|||||||++|||+||+||   |+|||++||+|++++|++|+.+||.++|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEECHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             59999999828997945899878999699427988705455787567988427642555879999999999996899999


Q ss_pred             HHHHCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9840285336889999-71699999999998501224899
Q 005576           87 IYLKDWDFQRQRLPDN-SNVNKVRDFIKNVYVDRRYAGGK  125 (690)
Q Consensus        87 iyea~~d~~~~~~P~~-sd~~~~reFIraKYveKrf~~~k  125 (690)
                      +||++++.....+|.. ++...+++||++||++|+|+.++
T Consensus        82 ~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          82 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9996488023758899866999999999999808651556
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure