Citrus Sinensis ID: 005665

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680----
MAILLQAKDRLLSRLKSLTKIQLKQRFNHTLEPQMCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDKDSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVKNCQLPDKELKVRTTEKHKWIENSCHFDQELSINEELVQKEGSQQLGEETQKAAKTCQSPEEEIKVNPEKILEKKDRHSLSTEGTNKKRDKQKRADDKKKNGLLLSSLFKEK
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccEEEcccccccccccccHHHHHHHHHHHHcccEEEEEccHHHHHHcccccccEEEEccccHHHHHHHHcccccccccccEEEEEEccEEEEEEccccccccccccccccccccccccHHHHHHHccccccccccHHccccccccccEEEccccHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHcccHHHHHHccccccccccccHHHHHHHHHcccccccHHHHHHHccc
ccHHEEccHHEHEccccccccccccccccccccHHHHHcccccccccccccccEEEcHHHccccHHHccHHHHHHHHHHHHcccEEEEEccHHHHHHHccccccccEEccccHHHHHHHHHHccEHccEEEEEEEEEccEEEEEEEEEccccccccccccEEEccccccHHHHHHHHHHHHccccEEEEEEEcccccEEEcccccHHHHHHccEEEEccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHccccHccccccHHHHHcHHHHHHHHHHHHHHccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHccccHHHHHHHHHHHHHHHcccccEEcccccccccccccccccccHHHHHcccHHcccccccHHHHHHHHHHHHHHHHccccHHHHccccccccccccHHHHHHHHHHccccHHHccccccccccccccccccccccHHHHHHHcccccccccccEEEEcccccccHHHccccHHHHHHcccccccccccccccccccccccHccccccHHHHHHccc
MAILLQAKDRLLSRLKSLTKIQLKQRFnhtlepqmcremcsdsfnqevdvsnwktvdsrnlgitramipqpSWVVLKILKSQGFQAYLVGGCVRdlllrrvpkdfdvITTANLKQIRRQFHRseiigrrfpicRVHIKGSVIEVSSFETVAkhgegketvllsqipygcdeidlvrwrnsihrdftinslffdpflnkiydyangisdlRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDqqagkitaenPMMLMRLFFNLdklvscdrpadyTLWVGLLSFHQalvsdpqdAFVVWVFASVLYHGKWKEGVKFARDrakepvkfvpeisgfseiesDEQLAVKVTELALSVQDCVNDLTKVFVSKKIERNVQQIFDVLVNSIEsynsgkrshiidydmlgkgnlvETRFVLGKIILKTIsgglvageeeideeempevldkdSVENYLAKknrkrglqpssAELKLKTAKKCKWTEKFSSINhelsmnkedvvpkEEVEEIHKAVKncqlpdkelkVRTTEKHkwienschfdqelSINEELVQKEGSQQLGEETQKAAKtcqspeeeikvnpekilekkdrhslstegtnkkrdkqkraddkkknglLLSSLFKEK
MAILLQAKDRLLSRLKSLTKIQLKQRFNHTLEPQMCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDfdvittanlkqirrqfhrseiigrrfpicRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFArdrakepvkfvpeisgfseiesdEQLAVKVTELALSVQDCVNDLTKVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTisgglvageeeideeempevldkdsVENYLAkknrkrglqpssaelklktakkckwtekfssinhelsmnkedVVPKEEVEEIHKavkncqlpdkelkVRTTEKHKWIENSCHFDQELSINEELVQKEGSQQLGEETQKaaktcqspeeeikvnpekilekkdrhslstegtnkkrdkqkraddkkknglllsslfkek
MAILLQAKDRLLSRLKSLTKIQLKQRFNHTLEPQMCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCarilrglriaarlglSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICllrrynllkillPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGeeeideeempeVLDKDSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNkedvvpkeeveeIHKAVKNCQLPDKELKVRTTEKHKWIENSCHFDQELSINEELVQKEGSQQLGEETQKAAKTCQSPEEEIKVNPEKILEKKDRHSLSTEGTNkkrdkqkraddkkkNGLLLSSLFKEK
**********LLSRLKSLTKIQLKQRFNHTLEPQMCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVA**********************************************CKWT*****************************VKNCQL****LKVRTTEKHKWIENSCHFDQ***********************************************************************************
*********R*************************************************NLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFET*************SQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKVFVSKKIERNVQQIFDVLVNSI*************YDMLGKGNLVETRFVLGKIILKTIS**********************************************************************************************************************************************************************************************SSLF***
MAILLQAKDRLLSRLKSLTKIQLKQRFNHTLEPQMCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEE*********VLDKDSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVKNCQLPDKELKVRTTEKHKWIENSCHFDQELSINEELVQKE*********************EIKVNPEKILEKK**********************KKKNGLLLSSLFKEK
*AILLQAKDRLLSRLKSL********************************SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDKDSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINH*****KEDVVPKEEVEEIHKAVKNCQL*******************************************ETQKA***CQS*****************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAILLQAKDRLLSRLKSLTKIQLKQRFNHTLEPQMCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDKDSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVKNCQLPDKELKVRTTEKHKWIENSCHFDQELSINEELVQKEGSQQLGEETQKAAKTCQSPEEEIKVNPEKILEKKDRHSLSTEGTNKKRDKQKRADDKKKNGLLLSSLFKEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query684 2.2.26 [Sep-21-2011]
P44439452 Probable poly(A) polymera yes no 0.330 0.5 0.352 5e-34
Q8Z9C3465 Poly(A) polymerase OS=Sal N/A no 0.388 0.572 0.307 1e-28
Q8ZRQ8465 Poly(A) polymerase OS=Sal yes no 0.388 0.572 0.307 1e-28
P0ABF1465 Poly(A) polymerase OS=Esc N/A no 0.419 0.617 0.296 7e-28
P0ABF2465 Poly(A) polymerase OS=Esc yes no 0.419 0.617 0.296 7e-28
P0ABF3465 Poly(A) polymerase OS=Esc N/A no 0.419 0.617 0.296 7e-28
Q4L6G1400 CCA-adding enzyme OS=Stap yes no 0.349 0.597 0.296 3e-21
B9DNX1400 CCA-adding enzyme OS=Stap yes no 0.463 0.792 0.252 8e-21
Q8CP70400 CCA-adding enzyme OS=Stap yes no 0.352 0.602 0.255 1e-20
Q5HP86400 CCA-adding enzyme OS=Stap yes no 0.352 0.602 0.255 1e-20
>sp|P44439|PCNB_HAEIN Probable poly(A) polymerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pcnB PE=3 SV=1 Back     alignment and function desciption
 Score =  146 bits (369), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/244 (35%), Positives = 133/244 (54%), Gaps = 18/244 (7%)

Query: 75  VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
           V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A  +QI+  F R   ++GRRF + 
Sbjct: 39  VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 98

Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
            +     +IEV++F   A H + +         E +LL    YG  E D  R      RD
Sbjct: 99  HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR------RD 150

Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
           FT+N+L+++P  N + DY  GI DL+  KLR +      + ED  R+LR +R  A+L + 
Sbjct: 151 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 210

Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
             K  +  +  L+  ++ +  +R+  E   +L  G    +  LLR+Y L + L P  +AY
Sbjct: 211 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSAY 270

Query: 305 LDQQ 308
             ++
Sbjct: 271 FTEK 274
Polymerase that creates the 3' poly(A) tail found in some mRNAs.
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q8Z9C3|PCNB_SALTI Poly(A) polymerase OS=Salmonella typhi GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|Q8ZRQ8|PCNB_SALTY Poly(A) polymerase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|P0ABF1|PCNB_ECOLI Poly(A) polymerase OS=Escherichia coli (strain K12) GN=pcnB PE=1 SV=2 Back     alignment and function description
>sp|P0ABF2|PCNB_ECOL6 Poly(A) polymerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|P0ABF3|PCNB_ECO57 Poly(A) polymerase OS=Escherichia coli O157:H7 GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|Q4L6G1|CCA_STAHJ CCA-adding enzyme OS=Staphylococcus haemolyticus (strain JCSC1435) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|B9DNX1|CCA_STACT CCA-adding enzyme OS=Staphylococcus carnosus (strain TM300) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q8CP70|CCA_STAES CCA-adding enzyme OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q5HP86|CCA_STAEQ CCA-adding enzyme OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cca PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query684
255561389675 poly(A) polymerase, putative [Ricinus co 0.900 0.912 0.516 0.0
224084064458 predicted protein [Populus trichocarpa] 0.641 0.958 0.630 1e-166
449456945 810 PREDICTED: uncharacterized protein LOC10 0.887 0.749 0.482 1e-160
356495323714 PREDICTED: uncharacterized protein LOC10 0.827 0.792 0.485 1e-149
357484075675 Poly(A) polymerase [Medicago truncatula] 0.767 0.777 0.486 1e-143
449495173647 PREDICTED: uncharacterized LOC101212579 0.801 0.846 0.475 1e-143
297832374761 polynucleotide adenylyltransferase famil 0.713 0.641 0.508 1e-138
42569106757 polynucleotide adenylyltransferase-like 0.738 0.667 0.493 1e-137
357120849553 PREDICTED: poly(A) polymerase-like [Brac 0.641 0.793 0.496 1e-118
218192024558 hypothetical protein OsI_09859 [Oryza sa 0.681 0.835 0.473 1e-117
>gi|255561389|ref|XP_002521705.1| poly(A) polymerase, putative [Ricinus communis] gi|223539096|gb|EEF40692.1| poly(A) polymerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/720 (51%), Positives = 479/720 (66%), Gaps = 104/720 (14%)

Query: 1   MAILLQAKDRLLSRLKSLTKIQLKQRFNHTL---EPQMCREMCSDSFNQE---VDVSNWK 54
           MAI+ +AK    SRL++LT +Q   RFNH+L    P   R + SDS +Q+   +D+S WK
Sbjct: 1   MAIIFRAKSCFASRLRNLTTLQ---RFNHSLIEQTPLYPRMISSDSKDQQSTVIDISKWK 57

Query: 55  TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
            +++  +GI R+MIP   W+VLKIL ++GF+AYLVGGCVRDLLL R+PKDFDVITTA LK
Sbjct: 58  KINASAVGIKRSMIPPSPWLVLKILHNKGFEAYLVGGCVRDLLLNRIPKDFDVITTAKLK 117

Query: 115 QIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDL 174
           Q+++QFHR EI+GRRFPICRVH+KGSV+EVSSFETVA+H EGKE VL+SQ P GC+  D 
Sbjct: 118 QVKKQFHRCEIVGRRFPICRVHVKGSVVEVSSFETVAQHNEGKEEVLISQKPSGCNGRDF 177

Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
           +RWRNS+HRDFTINSLFFDPF+N+I+DYANG++DL  LKLRT+IPA LSF EDCARILRG
Sbjct: 178 IRWRNSMHRDFTINSLFFDPFMNQIFDYANGMADLSFLKLRTVIPARLSFQEDCARILRG 237

Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
           LRIA RLGLS  KD ++A+  LSSS++ LDK+RIMMELNYMLSYGAAES+I LL+R+NLL
Sbjct: 238 LRIAGRLGLSISKDTESAIRKLSSSVKSLDKARIMMELNYMLSYGAAESTIYLLQRFNLL 297

Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVS 354
           ++ LPFHAAYL QQAG+  +   +MLM+LFFNLD LVSCDRP   +LWVGLL+FHQALV+
Sbjct: 298 ELFLPFHAAYLSQQAGETFSLGSVMLMKLFFNLDTLVSCDRPCTSSLWVGLLAFHQALVT 357

Query: 355 DPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTEL 414
           +PQDA V WVFASVLYHGKWK+GV+FAR+ AK  VKF PEISGFSE +SDE+LA +V+ L
Sbjct: 358 NPQDALVSWVFASVLYHGKWKDGVEFARENAKMQVKFAPEISGFSEFKSDEELAEEVSHL 417

Query: 415 ALSVQDCVNDLTK-------------------VFVSKKIERNVQQIFDVLVNSIESYNSG 455
           A  VQD V+ L                     VFVSKKI  +V Q+F+VLV+ +ESY + 
Sbjct: 418 ASLVQDSVDALMDTDTLAQSMSRFGVTSSSGLVFVSKKIANDVAQLFNVLVDDVESYKTE 477

Query: 456 KRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDK------- 508
           + S +IDY +LGKGN  ETRFVLGK+IL+T+SGGL  G E    E+ P+V+++       
Sbjct: 478 RESFMIDYYLLGKGNQHETRFVLGKVILETLSGGLTKGVEV--AEDGPKVIEEKHDSKLS 535

Query: 509 DSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEK---FSSINHELSMNKEDVVPKEEV 565
           D V++Y+                        +W E+    S ++HE S  K         
Sbjct: 536 DLVKDYM-----------------------VEWKEEIPVLSPLDHEHSQKK--------- 563

Query: 566 EEIHKAVKNCQLPDKELKVRTTEKHKWIENSCHFDQELSINEELVQKEGSQQLGEETQKA 625
                               T  K K +     ++++++  E+ V K  S+ + ++ QK 
Sbjct: 564 --------------------TGNKRKLVMTKSFYEEKVATKED-VLKNKSEAVAKKPQKI 602

Query: 626 AKTCQSPEEEIKVNPEKILEKKDRHSLSTEGT-NKKRDKQKRADDKKKNGLLLSSLFKEK 684
            K  Q PE          LEKK  H     GT N   + +   ++KK   LLL  + K+K
Sbjct: 603 LKITQLPE----------LEKKKHHLSENSGTSNLSIEGKVNHEEKKDCRLLLQEVVKDK 652

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224084064|ref|XP_002307206.1| predicted protein [Populus trichocarpa] gi|222856655|gb|EEE94202.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449456945|ref|XP_004146209.1| PREDICTED: uncharacterized protein LOC101212579 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495323|ref|XP_003516528.1| PREDICTED: uncharacterized protein LOC100794882 [Glycine max] Back     alignment and taxonomy information
>gi|357484075|ref|XP_003612324.1| Poly(A) polymerase [Medicago truncatula] gi|355513659|gb|AES95282.1| Poly(A) polymerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449495173|ref|XP_004159755.1| PREDICTED: uncharacterized LOC101212579 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297832374|ref|XP_002884069.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297329909|gb|EFH60328.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42569106|ref|NP_179349.2| polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana] gi|330251561|gb|AEC06655.1| polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357120849|ref|XP_003562137.1| PREDICTED: poly(A) polymerase-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|218192024|gb|EEC74451.1| hypothetical protein OsI_09859 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query684
TAIR|locus:2053913757 AT2G17580 [Arabidopsis thalian 0.619 0.560 0.476 2.7e-111
TAIR|locus:2010439541 AT1G28090 [Arabidopsis thalian 0.542 0.685 0.433 1.4e-80
TAIR|locus:2171641527 AT5G23690 [Arabidopsis thalian 0.590 0.766 0.382 2e-73
TAIR|locus:2099473 881 AT3G48830 [Arabidopsis thalian 0.600 0.466 0.367 2.2e-66
UNIPROTKB|Q4K5Y6463 pcnB "Poly(A) polymerase" [Pse 0.336 0.496 0.310 6.4e-23
TIGR_CMR|GSU_3250459 GSU_3250 "polyA polymerase" [G 0.169 0.252 0.436 1.3e-20
TIGR_CMR|SO_0872478 SO_0872 "polyA polymerase" [Sh 0.229 0.328 0.387 9.8e-19
TIGR_CMR|CBU_0286439 CBU_0286 "polyA polymerase" [C 0.328 0.512 0.298 1.6e-17
UNIPROTKB|Q9KUC8457 VC_0594 "PolyA polymerase" [Vi 0.314 0.470 0.298 2.5e-16
TIGR_CMR|VC_0594457 VC_0594 "polyA polymerase" [Vi 0.314 0.470 0.298 2.5e-16
TAIR|locus:2053913 AT2G17580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 970 (346.5 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
 Identities = 214/449 (47%), Positives = 280/449 (62%)

Query:     1 MAILLQAKDRLLSRLKSLTKIQLK-QRFNHTLEP---QMC---REMCSDSFNQEVDVSNW 53
             MA  ++ K  +    ++L  +  K QR N TL     + C   R++  +  N  VD S W
Sbjct:     1 MAGFIKRKGNVFFHSQALAAVYSKLQRSNCTLAEGFMEKCSSIRQVIDEDINS-VDTSKW 59

Query:    54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
             K V + + GI  +MIP+ S  VL++L+ QGF AYLVGGCVRDL+L RVPKD+DVITTA+L
Sbjct:    60 KKVRASDAGIKNSMIPESSMNVLRLLRRQGFDAYLVGGCVRDLILNRVPKDYDVITTADL 119

Query:   114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA-----------KHGEGKETVL- 161
             KQIRR FHR+++IG+RFPIC V + GS+IEVSSF+TVA           K G   +T   
Sbjct:   120 KQIRRLFHRAQVIGKRFPICHVWMGGSIIEVSSFDTVAHSDSDLEKSKEKSGVSLDTKAN 179

Query:   162 ----LSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTL 217
                 L ++  G D  D  RWRNS+ RDFTINSLF++PF   IYDYANG+ DL  LKLRTL
Sbjct:   180 KNNSLFKMYSGWDIKDCKRWRNSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLKLRTL 239

Query:   218 IPAYLSFTEDCXXXXXXXXXXXXXXXSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLS 277
             +PA+LSF EDC               S  KD+ TA+    SS+  LD+ R++ME+NYML+
Sbjct:   240 VPAHLSFKEDCARILRGLRIAARLGLSLSKDVKTAIPEFVSSVANLDQFRLIMEMNYMLA 299

Query:   278 YGAAESSICXXXXXXXXXXXXPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPA 337
             YGAA  SI             PF AAYLDQ A K +  + +ML+RLF N+DKLVSCD+PA
Sbjct:   300 YGAAAPSILLLMKFKLLHVLLPFQAAYLDQ-ASKTSLSSSLMLVRLFSNMDKLVSCDQPA 358

Query:   338 DYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISG 397
             D  LW+ +L+FH ALV +PQ+A VV  FA++LYHG W + V+FAR+     + + PE+S 
Sbjct:   359 DPKLWIAVLAFHIALVRNPQEAIVVRAFAALLYHGNWSKAVEFAREHETSVIGYAPEVSK 418

Query:   398 FSEIESDEQLAVKVTELALSVQDCVNDLT 426
              S   SDE LA  V+E    ++D    LT
Sbjct:   419 SSRKRSDEDLAEAVSEFTCLLKDTQYVLT 447
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0006396 "RNA processing" evidence=IEA;ISS
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2010439 AT1G28090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171641 AT5G23690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099473 AT3G48830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K5Y6 pcnB "Poly(A) polymerase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3250 GSU_3250 "polyA polymerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0872 SO_0872 "polyA polymerase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0286 CBU_0286 "polyA polymerase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KUC8 VC_0594 "PolyA polymerase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0594 VC_0594 "polyA polymerase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.7.21LOW CONFIDENCE prediction!
3rd Layer2.7.70.691
4th Layer2.7.7.25LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.V.3616.1
hypothetical protein (458 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query684
TIGR01942410 TIGR01942, pcnB, poly(A) polymerase 8e-52
COG0617412 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) 4e-51
PRK11623472 PRK11623, pcnB, poly(A) polymerase I; Provisional 4e-34
cd05398139 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase 8e-31
pfam01743126 pfam01743, PolyA_pol, Poly A polymerase head domai 3e-28
PRK13299394 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Pr 7e-22
TIGR02692466 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransfera 2e-20
PRK13298417 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Pr 3e-10
pfam1262764 pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB- 7e-10
PRK10885409 PRK10885, cca, multifunctional tRNA nucleotidyl tr 1e-09
PRK13297364 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Pr 3e-08
PRK13296360 PRK13296, PRK13296, tRNA CCA-pyrophosphorylase; Pr 2e-06
>gnl|CDD|130997 TIGR01942, pcnB, poly(A) polymerase Back     alignment and domain information 
 Score =  184 bits (469), Expect = 8e-52
 Identities = 83/245 (33%), Positives = 128/245 (52%), Gaps = 6/245 (2%)

Query: 62  GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
            I R      +  V++ LK  G+QAY+VGG VRDLLL   PKDFDV+T+A  +++R+ F 
Sbjct: 8   NIPRQSFSAHALNVVERLKGAGYQAYIVGGAVRDLLLGIEPKDFDVVTSATPEEVRKLFR 67

Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
            S I+GRRF +  V     +IEV++F +  K     E  +L    YG  E D  R     
Sbjct: 68  NSRIVGRRFRLVHVSFGRQIIEVATFRSGHKSSVNAEGRILKDNVYGTLEEDAWR----- 122

Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
            RDFT+N+L++DP    I DY  G+ DL+  +LR +      + ED  R+LR LR + +L
Sbjct: 123 -RDFTVNALYYDPSREVIIDYVGGMEDLKNRRLRLIGDPRSRYQEDPVRMLRALRFSVKL 181

Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
             +  +     +   +  ++ +  +R+  E+  +L  G + +   +L  Y LL+ L P  
Sbjct: 182 EFTIDESTARPIRESAPLLKGIPPARLFEEILKLLFSGRSAALFRMLCGYQLLEPLFPSV 241

Query: 302 AAYLD 306
           A  L 
Sbjct: 242 AYALR 246

This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca). Length = 410
>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional Back     alignment and domain information
>gnl|CDD|143388 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>gnl|CDD|216675 pfam01743, PolyA_pol, Poly A polymerase head domain Back     alignment and domain information
>gnl|CDD|237339 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|131739 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransferase Back     alignment and domain information
>gnl|CDD|237338 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|221674 pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB- binding site of polymerase A Back     alignment and domain information
>gnl|CDD|182810 PRK10885, cca, multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>gnl|CDD|139469 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|106256 PRK13296, PRK13296, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 684
PRK11623472 pcnB poly(A) polymerase I; Provisional 100.0
TIGR01942410 pcnB poly(A) polymerase. This model describes the 100.0
KOG2159416 consensus tRNA nucleotidyltransferase/poly(A) poly 100.0
COG0617412 PcnB tRNA nucleotidyltransferase/poly(A) polymeras 100.0
TIGR02692466 tRNA_CCA_actino tRNA adenylyltransferase. The enzy 100.0
PRK13299394 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK10885409 cca multifunctional tRNA nucleotidyl transferase/2 100.0
PRK13298417 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK13297364 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK13296360 tRNA CCA-pyrophosphorylase; Provisional 100.0
cd05398139 NT_ClassII-CCAase Nucleotidyltransferase (NT) doma 100.0
PF01743126 PolyA_pol: Poly A polymerase head domain; InterPro 99.98
PHA01806200 hypothetical protein 99.87
PRK03381774 PII uridylyl-transferase; Provisional 99.6
PRK00227693 glnD PII uridylyl-transferase; Provisional 99.6
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 99.59
PRK00275895 glnD PII uridylyl-transferase; Provisional 99.59
PRK05092931 PII uridylyl-transferase; Provisional 99.53
PRK03059856 PII uridylyl-transferase; Provisional 99.52
PRK01759854 glnD PII uridylyl-transferase; Provisional 99.39
PRK05007884 PII uridylyl-transferase; Provisional 99.33
PF1262764 PolyA_pol_RNAbd: Probable RNA and SrmB- binding si 99.23
PRK04374869 PII uridylyl-transferase; Provisional 99.09
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 98.86
cd07749156 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) dom 92.24
PF09970181 DUF2204: Nucleotidyl transferase of unknown functi 90.41
PF10706174 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransf 84.78
>PRK11623 pcnB poly(A) polymerase I; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.6e-66  Score=566.77  Aligned_cols=284  Identities=29%  Similarity=0.468  Sum_probs=257.9

Q ss_pred             CceeccccccCCccCCCChhHHHHHHHHHHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCHHHHHHHhccCcccccccC
Q 005665           52 NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFP  131 (684)
Q Consensus        52 ~~~~~~~~~~gI~~~~ip~~a~~VL~~L~~~G~eaYLVGG~VRDlLLGr~PkD~DIvT~a~~eei~k~F~~~~ivG~rF~  131 (684)
                      +...++.++|||++.+||++++.|++.|+++||++|||||||||+|||++|+||||+|+|+|+++.+.|++|.++|++|+
T Consensus        35 ~~~~i~~~~H~i~~~~i~~~a~~Vl~~L~~~G~eaYLVGG~VRDlLLG~~pkD~DIaT~A~peev~~lf~~~r~iGrrF~  114 (472)
T PRK11623         35 QMTVIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFR  114 (472)
T ss_pred             CceEeeccccCcCcccCCHHHHHHHHHHHHCCCeEEEeChHHHHHHcCCCCCCEEEecCCCHHHHHHHhhhCeeecCCCC
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEECCEEEEEeccccccccCCC--------CceeeecCCCCCCchhhhhhhhhhcccccccccccccCCCCeEeeCc
Q 005665          132 ICRVHIKGSVIEVSSFETVAKHGEG--------KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYA  203 (684)
Q Consensus       132 i~~V~~~G~~IEVatfRte~~~~~~--------~~~v~~s~~~~gt~eeDL~~w~Da~RRDFTINALayd~~~g~IiD~f  203 (684)
                      ++||.+++..|||+|||++.+...+        .......++.+|++++|+      .||||||||||||+.++.|+|||
T Consensus       115 ~~hV~~~~~~iEVaTfR~~~~~~~~~~~~~~~~~~g~~~rdn~~gtieeDl------~RRDFTINALayd~~~~~IiD~~  188 (472)
T PRK11623        115 LAHVMFGPEIIEVATFRGHHEGNESDRNTSQRGQNGMLLRDNIFGSIEEDA------QRRDFTINSLYYSVADFTVRDYV  188 (472)
T ss_pred             EEEEEECCceEEEeccccccccccccccccccCCCCceecccCCCCHHHHH------HhccccHHHheecCCCCeEecCC
Confidence            9999999999999999987643321        122445566788999996      79999999999999889999999


Q ss_pred             CcHHHHhcCceeecccccccccccHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhhhccCCCHHHHHHHHHHHHhCCCHHH
Q 005665          204 NGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES  283 (684)
Q Consensus       204 GGleDLk~~~IR~v~~p~~rF~EDPlRILRAiRFAARLGF~IdpeT~~aIr~~a~lL~~Is~eRI~~EL~KiL~~~~~~~  283 (684)
                      ||++||++|+||+||+|..+|.|||+|||||+|||++|||+|+++|..+|++++.+|..+|++||+.|+.|||.++++..
T Consensus       189 gG~~DLk~riLR~IGdp~~rf~EDPlRmLRAvRFAArLgF~Ie~~T~~aI~~~a~lL~~vs~eRI~~El~KlL~~~~~~~  268 (472)
T PRK11623        189 GGMKDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYE  268 (472)
T ss_pred             CCHHHHhCCceeecCChHhhcccchHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCchhhhhhhhhhhhhhcCCCCCchhHHHHHHHHHHHHHHhCCCCCchhHHHH
Q 005665          284 SICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVG  344 (684)
Q Consensus       284 aLrlL~e~GLL~~LfPe~a~~~~qq~~~h~~tvd~hll~lL~~Ld~ll~~~rp~~~slwla  344 (684)
                      ++++|+++|+|..+||++..++......   ....++..++.++|.++..+.++++...++
T Consensus       269 ~~~lL~e~GLl~~lfPel~~~~~~~~~~---~~~~~~~~~l~~tD~ri~~~~~v~p~fl~a  326 (472)
T PRK11623        269 TYKLLCEYHLFQPLFPTITRYFTENGDS---PMERIIEQVLKNTDTRIHNDMRVNPAFLFA  326 (472)
T ss_pred             HHHHHHHcCCHHHHhHhHHHHhcccccc---HHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            9999999999999999999877543221   234678899999999999999988754333

>TIGR01942 pcnB poly(A) polymerase Back     alignment and domain information
>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase Back     alignment and domain information
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2 Back     alignment and domain information
>PHA01806 hypothetical protein Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily Back     alignment and domain information
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function Back     alignment and domain information
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query684
3aqk_A414 Structure Of Bacterial Protein (Apo Form I) Length 1e-19
3aql_A415 Structure Of Bacterial Protein (Apo Form Ii) Length 1e-19
3aqm_A415 Structure Of Bacterial Protein (Form Ii) Length = 4 2e-19
1miy_A404 Crystal Structure Of Bacillus Stearothermophilus Cc 3e-10
1miv_A404 Crystal Structure Of Bacillus Stearothermophilus Cc 3e-08
1vfg_A390 Crystal Structure Of Trna Nucleotidyltransferase Co 2e-07
1ou5_A448 Crystal Structure Of Human Cca-Adding Enzyme Length 2e-06
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I) Length = 414 Back     alignment and structure 
Iteration: 1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 20/177 (11%)
Query: 62  GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
            I+R  I + +  V+  L   G++A+LVGG VRDLLL + PKDFDV T A  +Q+R+ F 
Sbjct: 10  AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
              ++GRRF +  V     +IEV++F     H E           G+  +LL    +G  
Sbjct: 70  NCRLVGRRFRLAHVMFGPEIIEVATFRG---HHEGNVSDRTTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
           E D  R      RDFTINSL++      + DY  G+ DL+   +R +      + ED
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYRED 177
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii) Length = 415 Back     alignment and structure
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii) Length = 415 Back     alignment and structure
>pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-adding Enzyme In Complex With Ctp Length = 404 Back     alignment and structure
>pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme Length = 404 Back     alignment and structure
>pdb|1VFG|A Chain A, Crystal Structure Of Trna Nucleotidyltransferase Complexed With A Primer Trna And An Incoming Atp Analog Length = 390 Back     alignment and structure
>pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme Length = 448 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query684
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 8e-87
1miw_A404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 3e-49
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 9e-39
3h38_A441 TRNA nucleotidyl transferase-related protein; tran 3e-36
1ou5_A448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 9e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Length = 415 Back     alignment and structure
 Score =  277 bits (710), Expect = 8e-87
 Identities = 83/299 (27%), Positives = 137/299 (45%), Gaps = 17/299 (5%)

Query: 62  GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
            I+R  I + +  V+  L   G++A+LVGG VRDLLL + PKDFDV T A  +Q+R+ F 
Sbjct: 11  AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 70

Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET--------VLLSQIPYGCDEID 173
              ++GRRF +  V     +IEV++F    +      T        +LL    +G  E D
Sbjct: 71  NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEED 130

Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
             R      RDFTINSL++      + DY  G+ DL+   +R +      + ED  R+LR
Sbjct: 131 AQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLR 184

Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
            +R AA+LG+    +    +  L++ +  +  + +  E   +L  G    +  LL  Y+L
Sbjct: 185 AVRFAAKLGMRISPETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHL 244

Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
            + L P    Y  +           ++ ++  N D  +  D   +       + ++  L
Sbjct: 245 FQPLFPTITRYFTENGDS---PMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLL 300
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Length = 404 Back     alignment and structure
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Length = 390 Back     alignment and structure
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Length = 441 Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Length = 448 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query684
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 100.0
1miw_A404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 100.0
3h38_A441 TRNA nucleotidyl transferase-related protein; tran 100.0
1ou5_A448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 100.0
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 100.0
4e8j_A161 Lincosamide resistance protein; structural genomic 92.98
2fcl_A169 Hypothetical protein TM1012; putative nucleotidylt 87.86
2la3_A191 Uncharacterized protein; ATP binding, CTP binding, 81.42
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Back     alignment and structure
Probab=100.00  E-value=9.6e-63  Score=533.49  Aligned_cols=282  Identities=28%  Similarity=0.445  Sum_probs=246.4

Q ss_pred             eeccccccCCccCCCChhHHHHHHHHHHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCHHHHHHHhccCcccccccCeE
Q 005665           54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPIC  133 (684)
Q Consensus        54 ~~~~~~~~gI~~~~ip~~a~~VL~~L~~~G~eaYLVGG~VRDlLLGr~PkD~DIvT~a~~eei~k~F~~~~ivG~rF~i~  133 (684)
                      +++++++|||++..||+.+..|++.|+++||++|+|||||||+|||++|+||||+|+|+|+++++.|+++..+|++|+++
T Consensus         3 ~~~~~~~h~i~~~~~~~~~~~v~~~l~~~G~~~ylVGG~VRD~LLg~~~~D~Di~t~a~p~~~~~~f~~~~~~g~~f~~~   82 (415)
T 3aql_A            3 TVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLA   82 (415)
T ss_dssp             CEECTTTSCCCCGGGSCSCHHHHHHHHHTTCCEEEETHHHHHHHHSSCCSCCEEEESSCHHHHHHHTTTSCCCCCSSSCC
T ss_pred             eEecHHhCCcChHhCCHHHHHHHHHHHHCCCeEEEECHHHHHHHcCCCCCCEEEEcCCCHHHHHHHhhhCeEecccCCEE
Confidence            47899999999999999999999999999999999999999999999999999999999999999999998999999999


Q ss_pred             EEEECCEEEEEeccccccccCC--CC------ceeeecCCCCCCchhhhhhhhhhcccccccccccccCCCCeEeeCcCc
Q 005665          134 RVHIKGSVIEVSSFETVAKHGE--GK------ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANG  205 (684)
Q Consensus       134 ~V~~~G~~IEVatfRte~~~~~--~~------~~v~~s~~~~gt~eeDL~~w~Da~RRDFTINALayd~~~g~IiD~fGG  205 (684)
                      +|.+++..|||+|||++.+...  ..      .......+.+|++++|+      .||||||||||||+.++.|+|||||
T Consensus        83 ~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~tl~eDl------~RRDFTINAla~~~~~~~l~D~~gG  156 (415)
T 3aql_A           83 HVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDA------QRRDFTINSLYYSVADFTVRDYVGG  156 (415)
T ss_dssp             EEESSSCEEEEEECCC-----------------------CCCCCHHHHH------TTSSBSGGGCEEETTTCCEECSSSH
T ss_pred             EEEECCcEEEEeeecccccccccccccccccCCCcccccccCCCHHHHH------hcCCccceeEEEeCCCCeeeCCCCC
Confidence            9999999999999999875320  00      11122334578889996      7999999999999988999999999


Q ss_pred             HHHHhcCceeecccccccccccHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhhhccCCCHHHHHHHHHHHHhCCCHHHHH
Q 005665          206 ISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI  285 (684)
Q Consensus       206 leDLk~~~IR~v~~p~~rF~EDPlRILRAiRFAARLGF~IdpeT~~aIr~~a~lL~~Is~eRI~~EL~KiL~~~~~~~aL  285 (684)
                      ++||++|+||++++|..+|.|||+|||||||||+++||.|+++|..+|++++..+..++.+|++.|+.|||.++++..+|
T Consensus       157 ~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~T~~ai~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l  236 (415)
T 3aql_A          157 MKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETY  236 (415)
T ss_dssp             HHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHHHHTHHHHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCChHHHHHHHHHHHcCCCHHHHH
Confidence            99999999999999989999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCchhhhhhhhhhhhhhcCCCCCchhHHHHHHHHHHHHHHhCCCCCchhHHHH
Q 005665          286 CLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVG  344 (684)
Q Consensus       286 rlL~e~GLL~~LfPe~a~~~~qq~~~h~~tvd~hll~lL~~Ld~ll~~~rp~~~slwla  344 (684)
                      ++|+++|+|..+||++..+.++.+.+|.++++.|++..   ++.++..+.+..+.+++|
T Consensus       237 ~~l~~~GlL~~~lPe~~~i~~~~q~~h~~~v~~h~L~~---~d~~i~~~~~~~~~L~lA  292 (415)
T 3aql_A          237 KLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKN---TDTRIHNDMRVNPAFLFA  292 (415)
T ss_dssp             HHHHHTTCSTTTCHHHHTTCCSSSCCHHHHHHHHHHHH---HHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHcCChHHhchhHHHHhccCCcchHHHHHHHHHHH---HHHHHhcCCCCCHHHHHh
Confidence            99999999999999999888766667777777776654   666666666655433333
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Back     alignment and structure
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A* Back     alignment and structure
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A Back     alignment and structure
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 684
d1miwa2139 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head d 2e-24
d1vfga2136 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquife 1e-20
d1ou5a2152 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head 2e-20
d1miwa1265 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-te 4e-10
d1vfga1215 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aqui 5e-08
d1ou5a1204 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-te 5e-07
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: tRNA CCA-adding enzyme, head domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 97.2 bits (241), Expect = 2e-24
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 75  VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
           +++ LK  G+ AY VGG VRDLLL R   D D+ T+A  + +   F ++  +G +     
Sbjct: 11  IIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFPKTIDVGSKHGTVV 70

Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
           V  KG   EV++F+T             S       E DL        RDFT+N++  D 
Sbjct: 71  VVHKGKAYEVTTFKT--DGDYEDYRRPESVTFVRSLEEDL------KRRDFTMNAIAMDE 122

Query: 195 FLNKIYDYANGISDLR 210
           +   I D   G   +R
Sbjct: 123 Y-GTIIDPFGGREAIR 137
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 136 Back     information, alignment and structure
>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Length = 265 Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 215 Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 204 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query684
d1miwa2139 tRNA CCA-adding enzyme, head domain {Bacillus stea 100.0
d1ou5a2152 tRNA CCA-adding enzyme, head domain {Human (Homo s 100.0
d1vfga2136 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 100.0
d1miwa1265 tRNA CCA-adding enzyme, C-terminal domains {Bacill 99.81
d1vfga1215 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 99.79
d1ou5a1204 tRNA CCA-adding enzyme, C-terminal domains {Human 99.78
d2fcla1157 Hypothetical protein TM1012 {Thermotoga maritima [ 90.94
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: tRNA CCA-adding enzyme, head domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1e-33  Score=262.78  Aligned_cols=131  Identities=33%  Similarity=0.454  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCHHHHHHHhccCcccccccCeEEEEECCEEEEEeccccc
Q 005665           71 PSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETV  150 (684)
Q Consensus        71 ~a~~VL~~L~~~G~eaYLVGG~VRDlLLGr~PkD~DIvT~a~~eei~k~F~~~~ivG~rF~i~~V~~~G~~IEVatfRte  150 (684)
                      .++.|++.|+++|+++|+|||||||+|||++|+|+||+|++.|+++++.|.....+|..|+++.+..++..++++++|++
T Consensus         7 ~~l~i~~~l~~~g~~~ylVGG~VRD~LLg~~~~DiDi~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   86 (139)
T d1miwa2           7 EALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFPKTIDVGSKHGTVVVVHKGKAYEVTTFKTD   86 (139)
T ss_dssp             HHHHHHHHHHHTTCCEEEESHHHHHHHHTCCCCCCEEEESSCHHHHHHHCSSEEEEEGGGTEEEEEETTEEEEEEECEEC
T ss_pred             HHHHHHHHHHHCCCEEEEEcHHHHHHHcCCCCCCceEEecCChHHHhhhcccccccCceeeEEEEEEecceeeEEEEeec
Confidence            57889999999999999999999999999999999999999999999999877778999999999999999999999998


Q ss_pred             cccCCC--CceeeecCCCCCCchhhhhhhhhhcccccccccccccCCCCeEeeCcCcHHHHhcC
Q 005665          151 AKHGEG--KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCL  212 (684)
Q Consensus       151 ~~~~~~--~~~v~~s~~~~gt~eeDL~~w~Da~RRDFTINALayd~~~g~IiD~fGGleDLk~~  212 (684)
                      .+....  +..+.+    .+++++||      .||||||||||||+ .|+|+|||||++||+++
T Consensus        87 ~~~~~~~~~~~~~~----~~~i~eDl------~RRDFTINAma~~~-~g~liDp~~G~~DL~~k  139 (139)
T d1miwa2          87 GDYEDYRRPESVTF----VRSLEEDL------KRRDFTMNAIAMDE-YGTIIDPFGGREAIRRR  139 (139)
T ss_dssp             C---------CCEE----CSCHHHHH------HTSSBSGGGCEECT-TCCEECTTCHHHHHHHT
T ss_pred             cccccccccceeee----cCchhhhh------hcCCcceeeEEECC-CCCEEeCCCCHHHHhcC
Confidence            654432  222222    24678886      79999999999997 58999999999999875
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure