Citrus Sinensis ID: 005666

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680----

MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEGSENASSGDDEHSKELNPRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQRGANSRKDDPRVKELFDDIEKLRLEFESIERPNLELENPSPKTGTSSSEMSPKSPSSPPPTQRTTTQKPDISEHREKPVHKGEQALDPEAELAKLESEFGKVGQDYSAEEIGDWEFDELEREFKTGDSAPSK

ccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccc

ccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHcccccHHHHHHHHccccccccc

MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAfdeakdgprkpslvlyydadfggeplnfrDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCltggkevhHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKllsygdspevhaqKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKnlsegsenassgddehskelnprknleEEYLDYEAKIITTFSVVDNMKEQFYAqrgansrkddprvKELFDDIEKLRLEFEsierpnlelenpspktgtsssemspkspssppptqrtttqkpdisehrekpvhkgeqaldPEAELAKLESEFgkvgqdysaeeigdweFDELEREfktgdsapsk

MSSWWRNAVNKAvevgnknnltRTVKNYADNVVHQAGQAVAEGAkilqdrigvrsfksvnqTIRRLeeaalscrgpervMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAfdeakdgprkpSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTaitglkmnsdiERIDAEASDLKKRLEGMKAlqnssnedleqasEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKvlseslsnssvkaekrisdhrsqkeealkvrvvkanessekekeigAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEgsenassgddehskelnpRKNLEEEYLDYEAKIITTFSVVDNMKEQFYaqrgansrkddprvKELFDDIEKLRlefesierpnlelenpspktgtsssemspkspssppptqrtttqkpdisehrekpvhkgeqaLDPEAELAKLESEFGKVGQDYSAEEIGDWEFDELERefktgdsapsk

MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGlllkkkllSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVnlslaaaqarlrnaqeereqFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEGSENASSGDDEHSKELNPRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQRGANSRKDDPRVKELFDDIEKLRLEFESIERPNLELENPSPKtgtsssemspkspssppptqrtttqkpDISEHREKPVHKGEQALDPEAELAKLESEFGKVGQDYSAEEIGDWEFDELEREFKTGDSAPSK

***WWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLS***********************SLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKM*******************************************IEALKEALAQIRVCTRLEGLLLKKKLLSYG********************************************************************************************************************DELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVE*******************************EYLDYEAKIITTFSVVDNMKEQFYA*************************************************************************************************************************************

*********N****VGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKE********************************SLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEA***EEISLLLEMFGLCLTGGKEVHHA*****************************************DIERIDAEA***************************************LA************************************************************************************************************************************************************WINFLEDSW***********************YFVNLAISLLS***************************************************LDYEAKIITTFSVVDN**********************************************************************************************************************IGDWEFDELE************

MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKAL***************TKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSES******************KEEALKVRV***********EIGAEISELVKQRDHLEAELKKVNLSLAAAQA************DEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNL*******************PRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQ*********PRVKELFDDIEKLRLEFESIERPNLELE**********************************************QALDPEAELAKLESEFGKVGQDYSAEEIGDWEFDELERE**********

******************NNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYG***********************RKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKAL*************KTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLS*****************NPRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQRGANSRKDDPRVKELFDDIEKLRLEFESIERPNLELENP**************************************************A*L*K*ESEFGKVGQDYSAEEIGDWEFDELEREFK********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDGPRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDxxxxxxxxxxxxxxxxxxxxxQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEGSENASSGDDEHSKELNPRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQRGANSRKDDPRVKELFDDIEKLRLEFESIERPNLELENPSPKTGTSSSEMSPKSPSSPPPTQRTTTQKPDISEHREKPVHKGEQALDPEAELAKLESEFGKVGQDYSAEEIGDWEFDELEREFKTGDSAPSK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		684
297736434		680	unnamed protein product [Vitis vinifera]	0.992	0.998	0.719	0.0
359486438		699	PREDICTED: uncharacterized protein LOC10	0.992	0.971	0.700	0.0
217074440		682	unknown [Medicago truncatula]	0.986	0.989	0.700	0.0
356536514		682	PREDICTED: uncharacterized protein LOC10	0.985	0.988	0.690	0.0
356576857		677	PREDICTED: uncharacterized protein LOC10	0.983	0.994	0.689	0.0
255571703		683	conserved hypothetical protein [Ricinus	0.991	0.992	0.701	0.0
449451681		676	PREDICTED: uncharacterized protein LOC10	0.983	0.995	0.678	0.0
224098187		706	predicted protein [Populus trichocarpa]	0.989	0.958	0.694	0.0
30684467		679	uncharacterized protein [Arabidopsis tha	0.966	0.973	0.630	0.0
297811469		679	hypothetical protein ARALYDRAFT_909308 [	0.961	0.969	0.631	0.0

>gi\|297736434\|emb\|CBI25305.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/682 (71%), Positives = 564/682 (82%), Gaps = 3/682 (0%)

Query: 3   SWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQT 62
           SW R+AV+KAVEVGNKNNLTRTVKNYAD+VV  AGQAVAEGAKILQDRIG RS++S   T
Sbjct: 2   SWLRSAVSKAVEVGNKNNLTRTVKNYADSVVQHAGQAVAEGAKILQDRIGARSYRSFRLT 61

Query: 63  IRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRK 122
           ++RLEEAA+SCRGPER+ LL+RWL VLKE+EKL G   EDKEK  EQ    DEA+D P+K
Sbjct: 62  VKRLEEAAVSCRGPERIQLLKRWLAVLKEIEKLSGAPFEDKEKNSEQQATTDEARDNPKK 121

Query: 123 PSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGK 182
            S+VLYYD+D GG P+NFRDVFL SQALE IT+SMILEAPNEEE+SLLLEMF LCLTGGK
Sbjct: 122 SSMVLYYDSDMGGGPVNFRDVFLHSQALEGITLSMILEAPNEEEVSLLLEMFELCLTGGK 181

Query: 183 EVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKK 242
           EVH+AI SSIQDL  A S+Y+DEVLVKREELLQFAQ AITGLK+N+D+ RID EAS LKK
Sbjct: 182 EVHNAIVSSIQDLGKAFSRYEDEVLVKREELLQFAQGAITGLKINADLRRIDTEASSLKK 241

Query: 243 RLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSP 302
           +L+GM      S+E   + SE+TT ATIEALKEAL QIRVC+RLEGLLLKKK L+ GDSP
Sbjct: 242 KLDGMSLSGKPSSEGHLETSEETTVATIEALKEALVQIRVCSRLEGLLLKKKFLNSGDSP 301

Query: 303 EVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEI 362
           EVHAQKVDKLKVLSESL+NSS KAEKRI+DHRSQKEEALK RV KA+E SE EK++  EI
Sbjct: 302 EVHAQKVDKLKVLSESLANSSTKAEKRIADHRSQKEEALKFRVSKASEVSEVEKDLITEI 361

Query: 363 SELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSI 422
             L KQRD LEAELK+VN+SLAAA  RL N +EER QFDEA++QIV HLKTKEDELLK+I
Sbjct: 362 EGLQKQRDELEAELKRVNISLAAANVRLHNMREERSQFDEASNQIVTHLKTKEDELLKTI 421

Query: 423 AACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKE 482
           A+ +VE+DVL+TWINFLED+WVLQCS  ++KEKQV +EL +HEDYFV+LAI LLS+YKKE
Sbjct: 422 ASSKVEADVLNTWINFLEDTWVLQCSYADIKEKQVDDELEEHEDYFVHLAIGLLSSYKKE 481

Query: 483 LGPSISRIGKFVENLKNLSEGSENASSGDDEHSKELNPRKNLEEEYLDYEAKIITTFSVV 542
           L PSISRIGKFVENLK+LS+GSE   + D E   +LNPRK+LE++Y D+EAKIITTFSVV
Sbjct: 482 LEPSISRIGKFVENLKSLSQGSETEVAADTE---DLNPRKSLEQQYRDHEAKIITTFSVV 538

Query: 543 DNMKEQFYAQRGANSRKDDPRVKELFDDIEKLRLEFESIERPNLELENPSPKTGTSSSEM 602
           DNMKEQFYAQ+G  SRK+DPRVK LFDD+EKLR EFESIERP LE+E P+P+   S S  
Sbjct: 539 DNMKEQFYAQQGKISRKNDPRVKGLFDDLEKLRAEFESIERPILEIETPTPRGPESPSGA 598

Query: 603 SPKSPSSPPPTQRTTTQKPDISEHREKPVHKGEQALDPEAELAKLESEFGKVGQDYSAEE 662
             +   S    Q T TQ     EH + P  K EQ LDPEAELAKLESEFG V +DYSAEE
Sbjct: 599 KLQGSLSQSTVQVTETQNAVTDEHPKSPAVKTEQVLDPEAELAKLESEFGNVSRDYSAEE 658

Query: 663 IGDWEFDELEREFKTGDSAPSK 684
           IGDWEFDELERE ++GD+APSK
Sbjct: 659 IGDWEFDELERELRSGDTAPSK 680

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359486438\|ref\|XP_002275939.2\| PREDICTED: uncharacterized protein LOC100244989 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|217074440\|gb\|ACJ85580.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356536514\|ref\|XP_003536782.1\| PREDICTED: uncharacterized protein LOC100778459 [Glycine max]	Back alignment and taxonomy information

>gi\|356576857\|ref\|XP_003556546.1\| PREDICTED: uncharacterized protein LOC100803121 [Glycine max]	Back alignment and taxonomy information

>gi\|255571703\|ref\|XP_002526795.1\| conserved hypothetical protein [Ricinus communis] gi\|223533871\|gb\|EEF35601.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|449451681\|ref\|XP_004143590.1\| PREDICTED: uncharacterized protein LOC101219173 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224098187\|ref\|XP_002311132.1\| predicted protein [Populus trichocarpa] gi\|222850952\|gb\|EEE88499.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|30684467\|ref\|NP_196860.2\| uncharacterized protein [Arabidopsis thaliana] gi\|26450805\|dbj\|BAC42511.1\| unknown protein [Arabidopsis thaliana] gi\|29029006\|gb\|AAO64882.1\| At5g13560 [Arabidopsis thaliana] gi\|332004528\|gb\|AED91911.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297811469\|ref\|XP_002873618.1\| hypothetical protein ARALYDRAFT_909308 [Arabidopsis lyrata subsp. lyrata] gi\|297319455\|gb\|EFH49877.1\| hypothetical protein ARALYDRAFT_909308 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		684
TAIR\|locus:2173164		679	AT5G13560 [Arabidopsis thalian	0.976	0.983	0.581	1.9e-202
TAIR\|locus:2049821		669	AT2G37370 "AT2G37370" [Arabido	0.972	0.994	0.476	2.7e-155
ZFIN\|ZDB-GENE-070410-7		1129	zgc:158292 "zgc:158292" [Danio	0.698	0.423	0.216	5.3e-07
UNIPROTKB\|E3W9A2		1427	CLIP1 "Uncharacterized protein	0.555	0.266	0.224	5.4e-07
UNIPROTKB\|F1NWT9		1732	LOC100858793 "Uncharacterized	0.766	0.302	0.208	4.9e-06
SGD\|S000002216		1790	USO1 "Protein involved in the	0.567	0.216	0.224	8.4e-06
WB\|WBGene00004955		1198	spd-5 [Caenorhabditis elegans	0.621	0.354	0.209	8.7e-06
UNIPROTKB\|F1NI68		2142	GOLGA4 "Uncharacterized protei	0.551	0.176	0.22	1e-05
UNIPROTKB\|F1NMQ0		2150	GOLGA4 "Uncharacterized protei	0.551	0.175	0.22	1e-05
CGD\|CAL0006033		1040	orf19.6148 [Candida albicans (	0.593	0.390	0.205	1.5e-05

TAIR\|locus:2173164 AT5G13560 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1959 (694.7 bits), Expect = 1.9e-202, P = 1.9e-202
 Identities = 398/684 (58%), Positives = 495/684 (72%)

Query:     3 SWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQT 62
             SW R AVNKAVEVGN+ N+TRTVKNYAD+VV  AGQAVAEGAK+ QDRIGV ++KSV+QT
Sbjct:     2 SWLRTAVNKAVEVGNRKNITRTVKNYADSVVQHAGQAVAEGAKLFQDRIGVGAYKSVHQT 61

Query:    63 IRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRK 122
             I+RLEEAA+S RG ER +L+ RWL+VLKE+++      +DK+   E+  A DEAK    K
Sbjct:    62 IQRLEEAAVSYRGQERALLITRWLSVLKEIDRATDSSLKDKQLSSEEQLASDEAK----K 117

Query:   123 PSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGK 182
                VLYYD D GGEPLNFRDVFLQSQALE I +SMI+E P++EEI+LLLEMFGLCL GGK
Sbjct:   118 REWVLYYDPDIGGEPLNFRDVFLQSQALEGIVLSMIIEPPHDEEITLLLEMFGLCLNGGK 177

Query:   183 EVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKK 242
             EVH AI SS+QDLAT  S Y+DEVLVK++ELLQFAQ AITGLK+N+++ RIDAEASDL+K
Sbjct:   178 EVHDAIVSSMQDLATVFSSYKDEVLVKQDELLQFAQNAITGLKINAEMLRIDAEASDLRK 237

Query:   243 RLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGXXXXXXXXSYGDSP 302
             +LE M A Q    ++ E    K T  TIEA KE LA+IR+C+RLEG        S GDSP
Sbjct:   238 KLEKMNASQIP--QESEDKEHKETPLTIEAFKETLAKIRLCSRLEGLLIRKRQLSNGDSP 295

Query:   303 EVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEI 362
             ++HAQKVDKL+VL ESL+NS+ KAEKRIS++R QKEEALK RVVKANE+ EKEKE+GAEI
Sbjct:   296 DIHAQKVDKLRVLLESLANSTSKAEKRISENRLQKEEALKARVVKANETGEKEKELGAEI 355

Query:   363 SELVKQRDHLEAELKKVXXXXXXXXXXXXXXXXXXXXFDEANDQIVEHLKTKEDELLKSI 422
             ++L KQRD LEA+LK+V                    F EAN+QI+ HLKTK+D+L KS+
Sbjct:   356 AQLEKQRDELEADLKRVNLSLAAAQARFRNATEERDQFGEANNQIIAHLKTKDDDLSKSV 415

Query:   423 AACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKE 482
              AC+ E++V+ TWINFLED+W+LQCS +E K+KQ  +EL KHEDYF ++A+++LS YKKE
Sbjct:   416 VACKKEAEVIKTWINFLEDTWLLQCSHIETKDKQTLDELEKHEDYFSDVALNILSVYKKE 475

Query:   483 LGPSISRIGKFVENLKNLSEGSENASSGDDEHSKELNPRKNLEEEYLDYEAKIITTFSVV 542
             + P ISRI  +VENLKNL  GSE   + D   ++  NPRK LEEEY+DYE KIITTFS+V
Sbjct:   476 VAPLISRIENYVENLKNLGPGSEKPPNADQGDNQVSNPRKILEEEYIDYETKIITTFSIV 535

Query:   543 DNMKEQFYAQRGANSRKDDPRVKELFDDIEKLRLEFESIERPNLELENPSPKXXXXXXXX 602
             DN+KEQF   +    +KDD RVKELFDD+EK+R +FESI RP LE+E PSP+        
Sbjct:   536 DNVKEQFQVLQSKLDKKDDRRVKELFDDMEKMRQQFESIARPTLEIEIPSPRSSVTSPKS 595

Query:   603 XXXXXXXXXXXXXXXXXXXDISEHRE----------KPVHKGEQALDPEAELAKLESEFG 652
                                + ++ ++           P     Q  +PEAELA+LESEFG
Sbjct:   596 SATSPKSPKPSSSSMNASTESTQTQKPELSNSPQAPNPAAGSSQEFNPEAELAELESEFG 655

Query:   653 KVGQDYSAEEIGDWEFDELEREFK 676
             KV +DYSA+E+  WEFDELE+E +
Sbjct:   656 KVARDYSADEVDGWEFDELEKELQ 679

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR\|locus:2049821 AT2G37370 "AT2G37370" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-070410-7 zgc:158292 "zgc:158292" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E3W9A2 CLIP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NWT9 LOC100858793 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

SGD\|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

WB\|WBGene00004955 spd-5 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NI68 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NMQ0 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

CGD\|CAL0006033 orf19.6148 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029515001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (680 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		684
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 38/212 (17%), Positives = 88/212 (41%), Gaps = 16/212 (7%)

Query: 210 REELLQFAQTAITG--LKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTK 267
            +E  ++    +      +    E I+ + + L++ LE +    +   + LE+  +    
Sbjct: 217 LKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL--- 273

Query: 268 ATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAE 327
                L+E   +I+     E L +K+K+           + + + +   E       K E
Sbjct: 274 -----LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328

Query: 328 KRISDHRSQKEEALKVRVVKANESSEKEKE-IGAEISELVKQRDHLEAELKKVNLSLAAA 386
             I    ++ EE     + +  E   K ++ +  E +EL ++ + L AEL++V+   A  
Sbjct: 329 AEIDKLLAEIEE-----LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383

Query: 387 QARLRNAQEEREQFDEANDQIVEHLKTKEDEL 418
           +  L++ +E+ E+     +++   L   ++EL
Sbjct: 384 RDELKDYREKLEKLKREINELKRELDRLQEEL 415

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		684
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	96.47
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	95.05
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	94.35
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	94.08
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	92.86
PRK11637		428	AmiB activator; Provisional	92.27
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	92.0
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	91.55
PRK02224		880	chromosome segregation protein; Provisional	91.29
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	91.16
PHA02562		562	46 endonuclease subunit; Provisional	90.54
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.92
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	88.38
PRK02224		880	chromosome segregation protein; Provisional	87.6
KOG0996		1293	consensus Structural maintenance of chromosome pro	86.74
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	86.63
PRK09039		343	hypothetical protein; Validated	86.25
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	84.98
PRK03918		880	chromosome segregation protein; Provisional	84.72
PRK11637		428	AmiB activator; Provisional	84.49
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	83.03
PHA02562		562	46 endonuclease subunit; Provisional	81.25
PF10146		230	zf-C4H2: Zinc finger-containing protein ; InterPro	80.25

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

Probab=96.47  E-value=1.5  Score=53.19  Aligned_cols=198  Identities=21%  Similarity=0.309  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHhhhchHHHHHHhhhhhcchhhHH
Q 005666          357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQI---VEHLKTKEDELLKSIAACRVESDVLS  433 (684)
Q Consensus       357 El~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqi---v~hLK~KEdELskSIasc~vEA~vv~  433 (684)
                      .+..+|..++.+.+++++++.-+...+.....++.++.++.+.....-.++   +..++.+.++|-+.|..+..+..-++
T Consensus       825 ~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~  904 (1163)
T COG1196         825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK  904 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677777777777777777777777777777666665555444443333   33344555566666666665555555


Q ss_pred             HHHHhhchhhhHHHhHH---HHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhcccCCCccCCCC
Q 005666          434 TWINFLEDSWVLQCSQM---ELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEGSENASSG  510 (684)
Q Consensus       434 tWInFLEdTW~LQss~~---e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V~nLk~l~~~~e~~~~~  510 (684)
                      .=|..+..-+..-....   +..-.....++.....+++..          ++..-|.+|..-.+.|...+-      .+
T Consensus       905 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~le~~i~~lg~VN~------~A  968 (1163)
T COG1196         905 EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLET----------ELEREIERLEEEIEALGPVNL------RA  968 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhH----------HHHHHHHHHHHHHHhccCCCh------hH
Confidence            44444443332111111   000111111111111111111          444555555555555544331      11


Q ss_pred             CCccccccCcccchHHHHHhHhHHHHHHHHhhhhhHHHHHhhhcCCCCCCchHHHHHHHHHHH-HHHHhccc
Q 005666          511 DDEHSKELNPRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQRGANSRKDDPRVKELFDDIEK-LRLEFESI  581 (684)
Q Consensus       511 d~e~Sk~~npRk~LEeeYLe~E~Kii~~fSivD~mk~~fy~~q~~~sRkdd~~vkeLf~~IeK-lR~efEsI  581 (684)
                      -++-.....-...|..+|=+.+...-+....+..|++           +-..++++.|+.|.+ ++.=|..+
T Consensus       969 iee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~-----------~~~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196         969 IEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK-----------EKRERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222222333345555555666655555555555555           334567777777754 44444444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		684
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-09
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 93.0 bits (230), Expect = 1e-19
 Identities = 80/591 (13%), Positives = 183/591 (30%), Gaps = 171/591 (28%)

Query: 125 LVLYYDADFGGEPLNFRDV--FLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGK 182
           ++  ++  F  +  + +DV    +S  L    +  I+ + +    +L L  F   L+  +
Sbjct: 21  ILSVFEDAFV-DNFDCKDVQDMPKS-ILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQE 76

Query: 183 E-VHHAITSSIQD----LATAISK-------------YQDEVL-----------VKREEL 213
           E V   +   ++     L + I                Q + L           V R + 
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 214 LQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMK-------ALQNSSNEDLEQ------ 260
               + A+  L+   ++             ++G+        AL    +  ++       
Sbjct: 137 YLKLRQALLELRPAKNVL------------IDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 261 -----ASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVL 315
                 +  + +  +E L+      ++  +++     +   S      +H+ +  +L+ L
Sbjct: 185 FWLNLKNCNSPETVLEMLQ------KLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRL 237

Query: 316 ------SESL-------SNSSVKA------------EKRISDHRSQKEEALKVRVVKANE 350
                    L       +  +  A             K+++D  S       + +   + 
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT-HISLDHHSM 296

Query: 351 S-SEKE-KEIGAEISELVKQRDHLEAELKKVN---LSLAAAQ-----ARLRN-AQEEREQ 399
           + +  E K +  +  +   Q   L  E+   N   LS+ A       A   N      ++
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 400 FDEANDQIVEHLKTKED-ELLKSIA----ACRVESDVLST-WINFLED---SWVLQCSQM 450
                +  +  L+  E  ++   ++    +  + + +LS  W + ++      V +  + 
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 451 ELKEKQVSE----------ELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNL 500
            L EKQ  E          EL    +    L  S++  Y                  K  
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI---------------PKTF 459

Query: 501 SEGSENASSGDD-------EHSKELNPRKNLEE---EYLDY---EAKIITT-------FS 540
                     D         H K +   + +      +LD+   E KI           S
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 541 VVDNMKE-QFYAQRGANSRKDDPRVKELFDDIEK--LRLEFESIERPNLEL 588
           +++ +++ +FY         +DP+ + L + I     ++E   I     +L
Sbjct: 520 ILNTLQQLKFYKPY---ICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

PyMOL of 1vt4

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		684
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	94.6
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	88.27
2bnx_A		386	Diaphanous protein homolog 1; autoinhibition, acti	87.78
2eqb_B		97	RAB guanine nucleotide exchange factor SEC2; coile	87.23
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	83.44

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

Probab=94.60  E-value=2.2  Score=41.72  Aligned_cols=19  Identities=11%  Similarity=0.127  Sum_probs=14.7

Q ss_pred             HhhHHHHHHHHHHHHHHHH
Q 005666          462 VKHEDYFVNLAISLLSAYK  480 (684)
Q Consensus       462 er~~d~Fv~La~~~Ls~~k  480 (684)
                      .+|+-||+.|--+.+..-+
T Consensus       199 ~~C~GC~~~lppq~~~~i~  217 (256)
T 3na7_A          199 QACGGCFIRLNDKIYTEVL  217 (256)
T ss_dssp             TBCTTTCCBCCHHHHHHHH
T ss_pred             CccCCCCeeeCHHHHHHHH
Confidence            4899999998777766554

PyMOL of 3na7

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B	Back alignment and structure

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00